Query 000979
Match_columns 1202
No_of_seqs 652 out of 4555
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 04:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2E-64 6.8E-69 672.9 35.1 218 600-842 1073-1300(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 3.6E-58 1.2E-62 611.3 33.8 217 601-842 1028-1254(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 6.1E-45 2.1E-49 446.2 30.4 202 603-843 357-560 (607)
4 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-44 7.8E-49 435.6 27.8 216 603-855 269-486 (538)
5 1yqt_A RNAse L inhibitor; ATP- 100.0 3.2E-44 1.1E-48 436.1 28.9 202 603-843 287-490 (538)
6 3tui_C Methionine import ATP-b 100.0 4.6E-44 1.6E-48 407.0 25.7 220 602-842 23-249 (366)
7 3j16_B RLI1P; ribosome recycli 100.0 7.6E-44 2.6E-48 435.2 29.3 190 630-844 361-557 (608)
8 3rlf_A Maltose/maltodextrin im 100.0 8.8E-44 3E-48 407.5 26.1 216 603-843 3-220 (381)
9 3tif_A Uncharacterized ABC tra 100.0 1.8E-43 6.3E-48 384.6 27.3 221 604-843 2-231 (235)
10 3fvq_A Fe(3+) IONS import ATP- 100.0 6.5E-44 2.2E-48 406.0 23.4 216 603-843 4-225 (359)
11 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-43 4.6E-48 392.7 23.9 217 603-843 7-230 (275)
12 2olj_A Amino acid ABC transpor 100.0 3.7E-43 1.3E-47 387.0 25.7 215 603-842 24-244 (263)
13 2pcj_A ABC transporter, lipopr 100.0 5.6E-43 1.9E-47 378.2 26.2 213 603-841 4-223 (224)
14 1b0u_A Histidine permease; ABC 100.0 9.8E-43 3.3E-47 385.0 26.1 214 603-841 6-237 (262)
15 1z47_A CYSA, putative ABC-tran 100.0 7.2E-43 2.5E-47 398.0 23.6 218 602-843 13-232 (355)
16 1vpl_A ABC transporter, ATP-bi 100.0 1.7E-42 5.9E-47 380.5 25.8 215 603-842 15-231 (256)
17 1g6h_A High-affinity branched- 100.0 7.4E-43 2.5E-47 385.5 22.8 218 603-842 7-238 (257)
18 2iw3_A Elongation factor 3A; a 100.0 3.9E-43 1.3E-47 441.8 22.9 207 603-840 671-981 (986)
19 2yyz_A Sugar ABC transporter, 100.0 8.7E-43 3E-47 398.5 23.6 215 604-843 4-220 (359)
20 2it1_A 362AA long hypothetical 100.0 1.1E-42 3.7E-47 398.2 24.3 214 604-842 4-219 (362)
21 1g29_1 MALK, maltose transport 100.0 2.2E-42 7.6E-47 398.2 26.2 214 604-842 4-225 (372)
22 1v43_A Sugar-binding transport 100.0 1.8E-42 6.2E-47 397.8 22.8 216 603-843 11-228 (372)
23 4g1u_C Hemin import ATP-bindin 100.0 1.5E-42 5.1E-47 383.7 20.8 214 603-843 11-234 (266)
24 3ux8_A Excinuclease ABC, A sub 100.0 7.6E-42 2.6E-46 429.7 29.8 196 631-842 337-636 (670)
25 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-42 4.9E-47 397.4 20.9 215 604-843 4-227 (353)
26 1ji0_A ABC transporter; ATP bi 100.0 4.4E-42 1.5E-46 375.3 23.7 214 603-842 6-224 (240)
27 3d31_A Sulfate/molybdate ABC t 100.0 4.3E-42 1.5E-46 391.7 20.3 210 604-842 2-213 (348)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 3.6E-41 1.2E-45 370.4 24.3 219 604-842 4-229 (250)
29 3nh6_A ATP-binding cassette SU 100.0 2.6E-41 9E-46 378.8 23.3 246 568-842 17-273 (306)
30 2yz2_A Putative ABC transporte 100.0 3.2E-41 1.1E-45 374.0 22.6 217 604-841 3-222 (266)
31 2onk_A Molybdate/tungstate ABC 100.0 3E-41 1E-45 367.4 21.8 208 604-841 2-211 (240)
32 2zu0_C Probable ATP-dependent 100.0 1.6E-40 5.5E-45 368.3 27.1 221 603-842 20-250 (267)
33 2ihy_A ABC transporter, ATP-bi 100.0 2.2E-41 7.6E-46 376.5 19.9 220 602-843 20-249 (279)
34 3pih_A Uvrabc system protein A 100.0 5.3E-40 1.8E-44 414.0 29.2 197 631-842 599-898 (916)
35 2nq2_C Hypothetical ABC transp 100.0 5.6E-40 1.9E-44 360.7 25.4 209 603-843 4-214 (253)
36 2r6f_A Excinuclease ABC subuni 100.0 1E-39 3.5E-44 406.7 28.0 195 631-841 639-937 (972)
37 1sgw_A Putative ABC transporte 100.0 1.4E-40 4.9E-45 354.8 17.3 202 602-835 9-210 (214)
38 2qi9_C Vitamin B12 import ATP- 100.0 4.1E-40 1.4E-44 360.1 20.8 205 604-843 5-219 (249)
39 2ff7_A Alpha-hemolysin translo 100.0 6.1E-40 2.1E-44 359.4 21.8 212 602-841 6-227 (247)
40 2ixe_A Antigen peptide transpo 100.0 3.4E-40 1.2E-44 366.2 19.0 215 603-842 16-241 (271)
41 2vf7_A UVRA2, excinuclease ABC 100.0 3.8E-39 1.3E-43 403.1 28.8 195 631-841 512-822 (842)
42 2ygr_A Uvrabc system protein A 100.0 3.4E-39 1.2E-43 403.6 27.0 196 631-842 657-956 (993)
43 1mv5_A LMRA, multidrug resista 100.0 9.7E-40 3.3E-44 357.7 14.6 211 604-842 2-222 (243)
44 2pjz_A Hypothetical protein ST 100.0 6.5E-39 2.2E-43 353.2 20.6 206 604-841 2-210 (263)
45 2ghi_A Transport protein; mult 100.0 1.5E-38 5E-43 351.1 20.4 212 603-842 17-238 (260)
46 3gd7_A Fusion complex of cysti 100.0 7.1E-39 2.4E-43 370.3 15.6 214 601-843 17-239 (390)
47 3b5x_A Lipid A export ATP-bind 100.0 1.6E-37 5.4E-42 383.8 26.6 215 601-842 339-563 (582)
48 3qf4_B Uncharacterized ABC tra 100.0 1.9E-38 6.6E-43 392.4 16.9 213 601-842 352-574 (598)
49 2yl4_A ATP-binding cassette SU 100.0 1.6E-37 5.5E-42 384.7 24.8 219 601-843 338-567 (595)
50 2cbz_A Multidrug resistance-as 100.0 1.3E-37 4.4E-42 339.0 20.5 200 604-842 4-213 (237)
51 2pze_A Cystic fibrosis transme 100.0 1E-37 3.5E-42 338.2 19.5 201 603-842 6-214 (229)
52 3qf4_A ABC transporter, ATP-bi 100.0 7.5E-38 2.5E-42 385.9 19.9 216 600-843 338-563 (587)
53 4a82_A Cystic fibrosis transme 100.0 8.5E-38 2.9E-42 385.5 19.6 215 600-842 336-560 (578)
54 3b60_A Lipid A export ATP-bind 100.0 1.8E-37 6.2E-42 383.3 21.0 215 601-842 339-563 (582)
55 4f4c_A Multidrug resistance pr 100.0 8.8E-36 3E-40 397.5 21.5 217 600-843 412-638 (1321)
56 2bbs_A Cystic fibrosis transme 100.0 2.1E-35 7.3E-40 329.5 18.3 197 602-842 39-243 (290)
57 3g5u_A MCG1178, multidrug resi 100.0 1E-35 3.5E-40 395.9 18.3 217 600-843 384-610 (1284)
58 2iw3_A Elongation factor 3A; a 100.0 1.3E-29 4.4E-34 319.3 24.4 195 602-842 434-631 (986)
59 3bk7_A ABC transporter ATP-bin 100.0 4E-31 1.4E-35 324.0 10.4 180 630-830 106-302 (607)
60 1yqt_A RNAse L inhibitor; ATP- 100.0 4.9E-31 1.7E-35 320.3 10.4 192 607-831 25-233 (538)
61 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-30 7.2E-35 325.7 12.7 206 629-843 31-295 (670)
62 3j16_B RLI1P; ribosome recycli 99.9 1.1E-28 3.7E-33 301.5 8.4 188 630-837 92-301 (608)
63 3ozx_A RNAse L inhibitor; ATP 99.9 2.1E-28 7.3E-33 296.0 9.2 172 638-831 21-212 (538)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.6E-28 2.2E-32 285.9 -8.4 196 633-854 129-350 (460)
65 4aby_A DNA repair protein RECN 99.9 1.7E-24 5.7E-29 257.8 16.0 203 631-839 50-381 (415)
66 3b85_A Phosphate starvation-in 99.9 1.9E-25 6.6E-30 237.3 -9.8 144 627-816 11-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.2E-22 1.5E-26 230.9 17.3 82 753-837 277-364 (365)
68 4gp7_A Metallophosphoesterase; 99.9 1.5E-23 5.2E-28 216.9 4.2 143 634-816 1-160 (171)
69 3tui_C Methionine import ATP-b 99.9 1.4E-22 4.9E-27 230.5 11.3 119 37-161 134-252 (366)
70 3nh6_A ATP-binding cassette SU 99.9 2.4E-22 8.3E-27 225.1 10.5 112 46-162 159-277 (306)
71 1e69_A Chromosome segregation 99.9 6E-22 2E-26 226.6 14.0 87 753-842 217-309 (322)
72 3gfo_A Cobalt import ATP-bindi 99.9 7.9E-22 2.7E-26 218.2 11.1 118 39-162 116-233 (275)
73 3fvq_A Fe(3+) IONS import ATP- 99.8 2.5E-21 8.4E-26 220.4 11.0 117 40-162 112-228 (359)
74 1tq4_A IIGP1, interferon-induc 99.8 4.7E-24 1.6E-28 248.0 -11.6 171 629-827 36-248 (413)
75 3rlf_A Maltose/maltodextrin im 99.8 3.6E-21 1.2E-25 220.5 11.2 120 37-162 104-223 (381)
76 4g1u_C Hemin import ATP-bindin 99.8 4.1E-21 1.4E-25 212.1 10.2 115 41-161 116-236 (266)
77 2onk_A Molybdate/tungstate ABC 99.8 3.7E-21 1.3E-25 209.0 9.2 113 44-162 104-216 (240)
78 2olj_A Amino acid ABC transpor 99.8 6.5E-21 2.2E-25 209.7 11.2 115 41-162 134-248 (263)
79 3tif_A Uncharacterized ABC tra 99.8 5.8E-21 2E-25 207.4 10.6 115 40-161 118-233 (235)
80 1z47_A CYSA, putative ABC-tran 99.8 6.8E-21 2.3E-25 217.1 11.6 118 39-162 118-235 (355)
81 2pcj_A ABC transporter, lipopr 99.8 1.1E-20 3.8E-25 203.7 12.1 109 41-157 115-223 (224)
82 1g6h_A High-affinity branched- 99.8 9.2E-21 3.1E-25 208.8 11.6 112 42-160 129-240 (257)
83 1b0u_A Histidine permease; ABC 99.8 6.4E-21 2.2E-25 210.4 10.0 115 41-162 127-242 (262)
84 1znw_A Guanylate kinase, GMP k 99.8 1.6E-24 5.4E-29 231.9 -18.3 185 628-834 8-206 (207)
85 2it1_A 362AA long hypothetical 99.8 8.5E-21 2.9E-25 217.1 11.2 118 39-162 106-223 (362)
86 2yyz_A Sugar ABC transporter, 99.8 9.7E-21 3.3E-25 216.4 10.9 117 40-162 107-223 (359)
87 1ye8_A Protein THEP1, hypothet 99.8 1.4E-21 4.6E-26 202.8 3.5 150 644-838 2-160 (178)
88 1g29_1 MALK, maltose transport 99.8 1.2E-20 4E-25 217.4 11.4 118 39-162 112-229 (372)
89 1v43_A Sugar-binding transport 99.8 1.5E-20 5.2E-25 215.8 11.8 117 40-162 115-231 (372)
90 1oxx_K GLCV, glucose, ABC tran 99.8 1E-20 3.5E-25 216.5 10.1 117 40-162 114-230 (353)
91 1vpl_A ABC transporter, ATP-bi 99.8 1.7E-20 5.7E-25 205.8 11.1 114 42-162 122-235 (256)
92 3qf4_A ABC transporter, ATP-bi 99.8 1.7E-20 6E-25 231.1 11.0 103 55-162 464-566 (587)
93 4a82_A Cystic fibrosis transme 99.8 1.6E-20 5.5E-25 231.4 10.0 103 55-162 462-564 (578)
94 3d31_A Sulfate/molybdate ABC t 99.8 2.8E-20 9.7E-25 211.9 10.7 111 45-161 106-216 (348)
95 3b5x_A Lipid A export ATP-bind 99.8 2.4E-20 8.2E-25 230.3 10.8 114 44-162 447-567 (582)
96 2yl4_A ATP-binding cassette SU 99.8 2.5E-20 8.6E-25 230.7 10.8 114 44-162 450-570 (595)
97 2nq2_C Hypothetical ABC transp 99.8 3.4E-20 1.2E-24 203.3 10.6 113 42-161 104-216 (253)
98 2yz2_A Putative ABC transporte 99.8 3.2E-20 1.1E-24 205.4 10.4 114 42-162 112-227 (266)
99 1ji0_A ABC transporter; ATP bi 99.8 2.1E-20 7.2E-25 203.8 8.7 113 42-161 114-227 (240)
100 3b60_A Lipid A export ATP-bind 99.8 2E-20 6.9E-25 230.9 9.5 114 44-162 447-567 (582)
101 2ihy_A ABC transporter, ATP-bi 99.8 2.3E-20 7.8E-25 207.4 8.8 113 42-161 137-251 (279)
102 2zu0_C Probable ATP-dependent 99.8 6.1E-20 2.1E-24 203.1 10.9 121 42-169 138-260 (267)
103 2d2e_A SUFC protein; ABC-ATPas 99.8 5E-20 1.7E-24 202.1 9.9 112 42-159 117-230 (250)
104 2ff7_A Alpha-hemolysin translo 99.8 6.3E-20 2.2E-24 200.6 9.9 113 44-161 112-231 (247)
105 3qf4_B Uncharacterized ABC tra 99.8 2.9E-20 1E-24 229.8 7.6 103 55-162 476-578 (598)
106 2ixe_A Antigen peptide transpo 99.8 7.9E-20 2.7E-24 202.5 10.0 109 47-162 135-245 (271)
107 2qi9_C Vitamin B12 import ATP- 99.8 9.6E-20 3.3E-24 198.9 9.2 111 44-161 104-221 (249)
108 2ghi_A Transport protein; mult 99.8 1.3E-19 4.4E-24 199.7 9.8 112 46-162 124-242 (260)
109 3sop_A Neuronal-specific septi 99.8 2.2E-21 7.5E-26 214.9 -6.1 147 644-815 4-150 (270)
110 2vf7_A UVRA2, excinuclease ABC 99.8 1.7E-18 5.8E-23 217.0 18.9 108 729-844 358-473 (842)
111 1mv5_A LMRA, multidrug resista 99.8 9.4E-20 3.2E-24 199.1 6.6 114 44-162 106-226 (243)
112 3b9q_A Chloroplast SRP recepto 99.8 1.3E-20 4.6E-25 211.7 -0.4 154 632-814 90-256 (302)
113 2pjz_A Hypothetical protein ST 99.8 2.6E-19 9E-24 196.9 9.0 110 43-162 104-215 (263)
114 3gd7_A Fusion complex of cysti 99.8 1.4E-19 4.7E-24 209.2 7.1 117 41-162 119-242 (390)
115 2v9p_A Replication protein E1; 99.8 9.1E-23 3.1E-27 227.6 -19.1 170 603-855 101-271 (305)
116 2cbz_A Multidrug resistance-as 99.8 6.4E-19 2.2E-23 191.5 8.4 99 59-162 116-217 (237)
117 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.1E-19 3.7E-24 207.4 2.1 130 631-832 160-290 (330)
118 1z6g_A Guanylate kinase; struc 99.8 1.4E-22 4.8E-27 218.2 -20.7 175 631-826 12-204 (218)
119 3qkt_A DNA double-strand break 99.8 9.5E-18 3.2E-22 193.1 18.1 77 753-831 246-328 (339)
120 2og2_A Putative signal recogni 99.8 4.4E-20 1.5E-24 211.0 -1.7 153 633-814 148-313 (359)
121 2dpy_A FLII, flagellum-specifi 99.7 1.2E-20 4.3E-25 222.4 -7.6 174 629-841 145-339 (438)
122 2o5v_A DNA replication and rep 99.7 5.1E-18 1.7E-22 194.4 13.0 80 755-843 265-353 (359)
123 2pze_A Cystic fibrosis transme 99.7 1.8E-18 6.3E-23 187.0 6.4 98 59-161 119-217 (229)
124 1cr0_A DNA primase/helicase; R 99.7 9.5E-19 3.3E-23 198.0 1.7 182 630-832 23-235 (296)
125 2bbs_A Cystic fibrosis transme 99.7 9.5E-18 3.3E-22 187.0 6.4 110 48-162 130-247 (290)
126 2r6f_A Excinuclease ABC subuni 99.7 1.1E-16 3.6E-21 200.4 16.0 135 702-844 450-598 (972)
127 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 9.9E-17 3.4E-21 160.0 11.0 76 753-830 55-136 (148)
128 3aez_A Pantothenate kinase; tr 99.7 1.1E-18 3.6E-23 197.2 -3.9 157 639-830 87-243 (312)
129 3pih_A Uvrabc system protein A 99.7 7.2E-17 2.5E-21 204.0 11.4 111 45-162 783-902 (916)
130 3thx_A DNA mismatch repair pro 99.7 9.7E-17 3.3E-21 203.9 12.2 150 628-842 648-809 (934)
131 1tf7_A KAIC; homohexamer, hexa 99.7 6.9E-17 2.4E-21 197.0 10.2 156 636-834 275-444 (525)
132 2o8b_B DNA mismatch repair pro 99.7 9.4E-18 3.2E-22 216.1 2.7 158 629-841 769-937 (1022)
133 2jeo_A Uridine-cytidine kinase 99.7 3.5E-18 1.2E-22 187.6 -2.3 155 627-814 10-164 (245)
134 1tf7_A KAIC; homohexamer, hexa 99.6 3.5E-19 1.2E-23 217.3 -12.9 167 628-831 24-209 (525)
135 2obl_A ESCN; ATPase, hydrolase 99.6 5E-18 1.7E-22 194.2 -3.3 188 604-841 46-250 (347)
136 2ehv_A Hypothetical protein PH 99.6 1.3E-17 4.6E-22 183.7 -0.0 168 632-831 19-207 (251)
137 2ygr_A Uvrabc system protein A 99.6 3.2E-16 1.1E-20 196.9 11.6 134 702-843 467-614 (993)
138 2eyu_A Twitching motility prot 99.6 6E-17 2E-21 178.4 3.6 131 631-831 16-147 (261)
139 1sgw_A Putative ABC transporte 99.6 1.2E-16 4.1E-21 170.1 4.7 98 44-150 112-209 (214)
140 3thx_B DNA mismatch repair pro 99.6 1.9E-16 6.3E-21 200.6 5.4 145 628-826 659-805 (918)
141 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 9.6E-16 3.3E-20 152.8 8.9 81 67-150 53-141 (148)
142 4a74_A DNA repair and recombin 99.6 1.1E-16 3.7E-21 174.0 1.1 152 637-832 20-200 (231)
143 2qnr_A Septin-2, protein NEDD5 99.6 5.1E-17 1.7E-21 183.3 -3.7 156 628-816 10-168 (301)
144 1rj9_A FTSY, signal recognitio 99.6 1.1E-16 3.7E-21 179.9 -2.4 149 641-816 101-259 (304)
145 3asz_A Uridine kinase; cytidin 99.6 6.2E-18 2.1E-22 181.3 -12.3 145 639-815 3-161 (211)
146 1ewq_A DNA mismatch repair pro 99.6 1.1E-15 3.8E-20 191.0 5.4 134 628-823 565-704 (765)
147 1wb9_A DNA mismatch repair pro 99.6 9.8E-16 3.4E-20 192.7 4.5 157 628-840 594-752 (800)
148 1pzn_A RAD51, DNA repair and r 99.5 3.2E-16 1.1E-20 180.3 -4.1 164 632-840 120-309 (349)
149 3jvv_A Twitching mobility prot 99.5 4.5E-15 1.5E-19 170.2 4.3 127 638-831 119-245 (356)
150 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 1.1E-14 3.8E-19 168.7 6.9 83 68-153 276-364 (365)
151 1nlf_A Regulatory protein REPA 99.5 3.4E-14 1.2E-18 159.0 10.4 151 638-816 26-182 (279)
152 3szr_A Interferon-induced GTP- 99.5 1.2E-15 4.2E-20 188.1 -2.5 166 636-841 42-232 (608)
153 2i3b_A HCR-ntpase, human cance 99.5 1.2E-16 4.1E-21 166.9 -10.1 158 642-840 1-170 (189)
154 2w0m_A SSO2452; RECA, SSPF, un 99.5 5.7E-14 1.9E-18 152.6 10.1 166 630-831 10-191 (235)
155 2qag_C Septin-7; cell cycle, c 99.5 1.7E-15 5.9E-20 176.8 -4.7 164 603-816 11-178 (418)
156 1pui_A ENGB, probable GTP-bind 99.4 2.7E-15 9.1E-20 160.4 -4.3 177 604-807 4-202 (210)
157 3kta_B Chromosome segregation 99.4 3.4E-13 1.1E-17 138.0 11.0 75 753-830 62-140 (173)
158 3kta_B Chromosome segregation 99.4 1.7E-13 6E-18 140.2 7.2 77 69-149 62-144 (173)
159 4aby_A DNA repair protein RECN 99.4 3.7E-13 1.3E-17 159.8 9.0 81 72-156 296-382 (415)
160 4ad8_A DNA repair protein RECN 99.4 4.4E-13 1.5E-17 163.0 9.2 76 753-831 394-472 (517)
161 2qag_B Septin-6, protein NEDD5 99.4 2.4E-14 8E-19 166.1 -2.3 167 632-814 30-218 (427)
162 1s96_A Guanylate kinase, GMP k 99.4 2E-14 6.7E-19 153.9 -3.8 128 636-816 10-141 (219)
163 2cvh_A DNA repair and recombin 99.4 4.8E-12 1.6E-16 136.0 14.7 153 631-832 8-185 (220)
164 2o5v_A DNA replication and rep 99.3 3.7E-13 1.3E-17 154.1 5.1 83 69-160 262-354 (359)
165 2bdt_A BH3686; alpha-beta prot 99.3 1.9E-16 6.5E-21 166.5 -20.6 170 642-842 2-180 (189)
166 1zp6_A Hypothetical protein AT 99.3 4.1E-15 1.4E-19 156.5 -10.7 143 638-802 5-148 (191)
167 1e69_A Chromosome segregation 99.3 2.3E-12 8E-17 146.9 9.0 89 69-161 217-312 (322)
168 2ewv_A Twitching motility prot 99.3 4.2E-13 1.4E-17 155.6 2.3 130 631-830 127-257 (372)
169 2npi_A Protein CLP1; CLP1-PCF1 99.3 3.4E-13 1.2E-17 159.8 1.5 103 46-161 217-337 (460)
170 2gza_A Type IV secretion syste 99.3 5.7E-13 2E-17 154.0 1.1 137 631-832 164-302 (361)
171 3auy_A DNA double-strand break 99.3 1.3E-11 4.5E-16 143.6 12.2 78 753-833 278-362 (371)
172 1lw7_A Transcriptional regulat 99.3 6.9E-15 2.4E-19 171.1 -15.6 166 632-830 158-342 (365)
173 1nij_A Hypothetical protein YJ 99.2 1.7E-15 5.9E-20 172.4 -21.7 156 643-816 5-190 (318)
174 2bbw_A Adenylate kinase 4, AK4 99.2 2.2E-14 7.4E-19 157.5 -12.8 148 641-805 26-200 (246)
175 2rcn_A Probable GTPase ENGC; Y 99.2 4.5E-12 1.5E-16 144.2 5.4 122 632-770 206-328 (358)
176 4ad8_A DNA repair protein RECN 99.2 1E-11 3.6E-16 150.9 7.3 77 69-149 394-473 (517)
177 1ye8_A Protein THEP1, hypothet 99.2 1.2E-11 4.1E-16 127.9 6.4 79 67-153 72-159 (178)
178 2yhs_A FTSY, cell division pro 99.2 9.2E-13 3.1E-17 154.3 -2.4 153 632-813 283-447 (503)
179 1n0w_A DNA repair protein RAD5 99.2 1.8E-11 6.2E-16 133.7 7.6 152 637-832 19-209 (243)
180 2f1r_A Molybdopterin-guanine d 99.2 1.2E-13 4.3E-18 141.3 -9.7 138 643-805 3-163 (171)
181 1htw_A HI0065; nucleotide-bind 99.2 8.4E-13 2.9E-17 133.4 -3.5 79 628-712 19-97 (158)
182 3auy_A DNA double-strand break 99.2 3.1E-11 1.1E-15 140.4 8.5 101 43-147 241-359 (371)
183 3qkt_A DNA double-strand break 99.2 1.9E-11 6.4E-16 140.5 6.4 76 69-147 246-327 (339)
184 1udx_A The GTP-binding protein 99.1 1.7E-12 5.9E-17 151.4 -2.9 171 632-827 147-320 (416)
185 2kjq_A DNAA-related protein; s 99.1 2.2E-11 7.7E-16 122.0 5.5 45 771-816 81-126 (149)
186 1w1w_A Structural maintenance 99.1 6.7E-11 2.3E-15 140.6 10.2 75 755-831 333-411 (430)
187 3ec2_A DNA replication protein 99.1 1.2E-11 3.9E-16 128.7 2.3 47 771-817 98-145 (180)
188 3e70_C DPA, signal recognition 99.1 4E-12 1.4E-16 144.0 -2.4 143 639-814 126-278 (328)
189 2qm8_A GTPase/ATPase; G protei 99.1 2.9E-13 9.9E-18 154.8 -12.0 163 629-803 42-260 (337)
190 1odf_A YGR205W, hypothetical 3 99.1 4.3E-12 1.5E-16 141.6 -2.5 128 640-790 29-169 (290)
191 3lda_A DNA repair protein RAD5 99.0 1.5E-10 5E-15 134.6 5.3 71 761-831 259-362 (400)
192 2v9p_A Replication protein E1; 99.0 1.5E-11 5E-16 137.2 -3.7 88 47-167 184-271 (305)
193 2yv5_A YJEQ protein; hydrolase 99.0 1.7E-11 5.9E-16 138.0 -3.6 123 638-769 161-301 (302)
194 2oap_1 GSPE-2, type II secreti 99.0 1.3E-12 4.4E-17 156.9 -14.0 177 629-823 247-457 (511)
195 4gp7_A Metallophosphoesterase; 99.0 1.2E-10 4.1E-15 119.8 2.6 69 71-142 83-167 (171)
196 1w1w_A Structural maintenance 99.0 2.8E-10 9.7E-15 135.2 6.1 75 70-147 332-410 (430)
197 3c8u_A Fructokinase; YP_612366 98.9 3.5E-12 1.2E-16 136.0 -11.1 148 639-825 19-168 (208)
198 1sxj_E Activator 1 40 kDa subu 98.9 6.3E-10 2.2E-14 128.8 6.9 163 645-853 39-203 (354)
199 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1E-12 3.5E-17 151.7 -17.7 171 638-843 16-210 (392)
200 1p9r_A General secretion pathw 98.9 1.7E-12 5.9E-17 151.7 -16.2 134 629-779 156-315 (418)
201 3b85_A Phosphate starvation-in 98.9 4.7E-10 1.6E-14 118.7 2.5 52 75-133 108-159 (208)
202 1lvg_A Guanylate kinase, GMP k 98.8 3.3E-13 1.1E-17 142.6 -24.8 56 766-830 116-172 (198)
203 1t9h_A YLOQ, probable GTPase E 98.8 2.9E-10 9.9E-15 127.0 -2.5 119 637-763 168-303 (307)
204 1in4_A RUVB, holliday junction 98.8 5.9E-11 2E-15 136.1 -9.6 151 629-803 31-194 (334)
205 2x8a_A Nuclear valosin-contain 98.7 7.2E-12 2.4E-16 139.2 -17.4 128 629-784 33-164 (274)
206 2dr3_A UPF0273 protein PH0284; 98.7 1.2E-09 4E-14 119.5 -1.1 60 772-831 127-196 (247)
207 1sq5_A Pantothenate kinase; P- 98.7 2.2E-10 7.7E-15 129.5 -8.5 97 604-717 38-156 (308)
208 1u0l_A Probable GTPase ENGC; p 98.7 3.6E-09 1.2E-13 119.1 1.0 102 637-747 164-288 (301)
209 2r6a_A DNAB helicase, replicat 98.6 9.9E-08 3.4E-12 113.9 12.7 177 631-832 192-399 (454)
210 1vma_A Cell division protein F 98.6 8.9E-09 3.1E-13 115.4 3.2 113 634-801 96-211 (306)
211 1ls1_A Signal recognition part 98.6 7E-08 2.4E-12 108.0 8.3 118 633-801 91-209 (295)
212 2zr9_A Protein RECA, recombina 98.5 1.1E-07 3.7E-12 108.9 9.0 78 762-840 126-237 (349)
213 1tq4_A IIGP1, interferon-induc 98.5 9.8E-09 3.4E-13 119.3 0.2 93 45-144 135-248 (413)
214 2ius_A DNA translocase FTSK; n 98.5 1.3E-09 4.4E-14 129.6 -7.8 166 634-816 159-343 (512)
215 1oix_A RAS-related protein RAB 98.5 2.2E-08 7.4E-13 104.9 0.7 37 762-800 152-188 (191)
216 3thx_A DNA mismatch repair pro 98.5 7.4E-08 2.5E-12 122.7 5.2 91 69-161 719-812 (934)
217 2px0_A Flagellar biosynthesis 98.4 1.1E-07 3.7E-12 106.3 5.2 141 640-838 103-247 (296)
218 1iy2_A ATP-dependent metallopr 98.4 1.8E-10 6.2E-15 128.6 -17.6 123 630-776 63-190 (278)
219 3tr0_A Guanylate kinase, GMP k 98.4 1.2E-08 4E-13 108.1 -3.1 60 636-701 1-63 (205)
220 2pt7_A CAG-ALFA; ATPase, prote 98.4 8E-08 2.7E-12 109.3 3.4 68 74-151 225-292 (330)
221 1ixz_A ATP-dependent metallopr 98.4 2.5E-10 8.4E-15 125.7 -17.2 123 630-776 39-166 (254)
222 3euj_A Chromosome partition pr 98.4 3.1E-08 1E-12 116.9 -1.0 50 631-683 19-68 (483)
223 3k1j_A LON protease, ATP-depen 98.4 5.2E-09 1.8E-13 129.6 -8.1 158 627-800 45-227 (604)
224 1cr0_A DNA primase/helicase; R 98.2 8.4E-07 2.9E-11 99.7 5.9 80 71-151 129-237 (296)
225 2ce7_A Cell division protein F 98.2 1.9E-06 6.5E-11 102.2 8.3 59 758-816 93-165 (476)
226 2f9l_A RAB11B, member RAS onco 98.1 1.1E-06 3.6E-11 92.5 4.4 37 764-802 130-166 (199)
227 3hr8_A Protein RECA; alpha and 98.1 8.8E-07 3E-11 100.9 3.2 34 632-665 49-84 (356)
228 3lnc_A Guanylate kinase, GMP k 98.1 7.4E-07 2.5E-11 96.2 2.4 38 630-667 15-53 (231)
229 2xau_A PRE-mRNA-splicing facto 98.1 3.3E-06 1.1E-10 106.8 7.6 79 754-833 189-269 (773)
230 2qtf_A Protein HFLX, GTP-bindi 98.0 5.8E-06 2E-10 95.1 8.3 148 644-803 181-353 (364)
231 4eun_A Thermoresistant glucoki 98.0 2.3E-07 8E-12 97.7 -3.6 56 636-697 23-80 (200)
232 1qhl_A Protein (cell division 98.0 1.5E-07 5.1E-12 100.5 -6.6 59 636-697 22-91 (227)
233 1z6g_A Guanylate kinase; struc 98.0 1.3E-07 4.3E-12 101.2 -7.3 83 45-147 105-192 (218)
234 3thx_B DNA mismatch repair pro 97.9 4.9E-06 1.7E-10 105.8 5.5 82 69-153 733-816 (918)
235 4a1f_A DNAB helicase, replicat 97.9 1E-05 3.5E-10 91.4 7.3 127 632-813 36-164 (338)
236 2o8b_B DNA mismatch repair pro 97.9 4.7E-06 1.6E-10 107.7 4.9 87 70-159 850-939 (1022)
237 1nlf_A Regulatory protein REPA 97.9 7E-06 2.4E-10 91.2 5.3 80 46-133 98-182 (279)
238 3nwj_A ATSK2; P loop, shikimat 97.9 9E-07 3.1E-11 96.1 -2.0 52 603-666 17-72 (250)
239 2w0m_A SSO2452; RECA, SSPF, un 97.9 7.1E-06 2.4E-10 88.2 4.7 79 71-149 103-192 (235)
240 3sop_A Neuronal-specific septi 97.9 3.1E-06 1E-10 93.3 1.8 60 57-130 89-148 (270)
241 2e87_A Hypothetical protein PH 97.9 2E-05 7E-10 90.7 8.6 61 754-816 230-293 (357)
242 2i3b_A HCR-ntpase, human cance 97.8 1.5E-06 5E-11 90.4 -1.3 86 62-155 75-169 (189)
243 2cvh_A DNA repair and recombin 97.8 2.3E-05 8E-10 83.3 7.7 79 71-149 84-185 (220)
244 3b9q_A Chloroplast SRP recepto 97.8 9.9E-06 3.4E-10 90.6 4.7 87 50-151 188-284 (302)
245 1znw_A Guanylate kinase, GMP k 97.8 5.7E-07 2E-11 95.3 -5.2 80 51-147 119-202 (207)
246 3aez_A Pantothenate kinase; tr 97.8 2.6E-06 8.8E-11 95.9 -0.5 55 44-104 155-209 (312)
247 1pzn_A RAD51, DNA repair and r 97.8 7.8E-06 2.7E-10 93.6 3.4 87 73-160 208-313 (349)
248 2dhr_A FTSH; AAA+ protein, hex 97.7 1.8E-07 6.1E-12 111.6 -12.6 128 631-784 55-187 (499)
249 1jjv_A Dephospho-COA kinase; P 97.7 6.4E-06 2.2E-10 87.0 0.6 71 756-830 60-131 (206)
250 3vaa_A Shikimate kinase, SK; s 97.7 1.5E-05 5.3E-10 83.6 3.1 38 629-666 12-49 (199)
251 1zu4_A FTSY; GTPase, signal re 97.6 7.9E-06 2.7E-10 92.2 -0.2 77 632-710 95-184 (320)
252 3t34_A Dynamin-related protein 97.6 8.7E-05 3E-09 85.6 8.6 57 756-813 155-212 (360)
253 2og2_A Putative signal recogni 97.6 4.1E-05 1.4E-09 87.3 5.6 87 50-151 245-341 (359)
254 4e22_A Cytidylate kinase; P-lo 97.6 5.5E-06 1.9E-10 90.5 -1.8 57 640-698 25-96 (252)
255 2dpy_A FLII, flagellum-specifi 97.6 4E-06 1.4E-10 98.7 -3.7 80 69-161 256-343 (438)
256 3kta_A Chromosome segregation 97.6 3.1E-05 1.1E-09 79.9 3.4 33 633-666 18-50 (182)
257 1fnn_A CDC6P, cell division co 97.5 0.00016 5.6E-09 84.1 9.5 44 772-816 124-170 (389)
258 2dy1_A Elongation factor G; tr 97.5 2.3E-05 8E-10 97.5 2.0 132 636-816 3-137 (665)
259 2j41_A Guanylate kinase; GMP, 97.5 4E-05 1.4E-09 80.7 3.3 30 638-667 2-31 (207)
260 3a00_A Guanylate kinase, GMP k 97.5 3.4E-05 1.2E-09 80.0 2.4 26 642-667 1-26 (186)
261 1ega_A Protein (GTP-binding pr 97.5 0.00014 4.9E-09 81.4 7.7 64 756-827 101-170 (301)
262 1kgd_A CASK, peripheral plasma 97.5 4.4E-05 1.5E-09 78.7 3.1 37 640-677 3-39 (180)
263 3asz_A Uridine kinase; cytidin 97.5 3.2E-06 1.1E-10 89.7 -5.9 83 44-131 67-160 (211)
264 3bh0_A DNAB-like replicative h 97.5 0.00013 4.6E-09 82.2 7.2 130 631-813 57-189 (315)
265 3b9p_A CG5977-PA, isoform A; A 97.4 0.0006 2E-08 76.2 12.1 70 757-826 97-183 (297)
266 2vp4_A Deoxynucleoside kinase; 97.4 2.2E-05 7.4E-10 84.5 0.0 42 635-682 13-54 (230)
267 4a74_A DNA repair and recombin 97.4 7.6E-05 2.6E-09 79.9 4.3 79 72-150 100-201 (231)
268 1ewq_A DNA mismatch repair pro 97.4 6.5E-05 2.2E-09 94.1 4.0 61 69-133 633-699 (765)
269 3uie_A Adenylyl-sulfate kinase 97.4 2.7E-05 9.2E-10 81.8 0.0 50 630-682 13-64 (200)
270 1wb9_A DNA mismatch repair pro 97.4 5.9E-05 2E-09 95.1 3.1 84 71-157 669-753 (800)
271 1v5w_A DMC1, meiotic recombina 97.3 0.0011 3.7E-08 75.7 13.0 143 632-815 111-274 (343)
272 2ehv_A Hypothetical protein PH 97.3 0.00014 4.9E-09 78.9 5.4 63 84-147 130-206 (251)
273 1svm_A Large T antigen; AAA+ f 97.3 3.7E-05 1.3E-09 88.4 0.4 37 630-666 157-193 (377)
274 2obl_A ESCN; ATPase, hydrolase 97.3 1.4E-05 4.8E-10 91.1 -3.6 80 69-161 169-254 (347)
275 2eyu_A Twitching motility prot 97.2 0.00018 6.3E-09 78.6 5.0 62 77-148 86-147 (261)
276 3tau_A Guanylate kinase, GMP k 97.2 0.00013 4.3E-09 77.2 3.5 28 640-667 6-33 (208)
277 2z4s_A Chromosomal replication 97.2 0.00014 4.8E-09 86.1 3.8 71 772-843 193-265 (440)
278 1pui_A ENGB, probable GTP-bind 97.2 0.00012 4.1E-09 77.1 2.7 69 47-119 129-198 (210)
279 2z43_A DNA repair and recombin 97.2 0.00089 3E-08 75.8 9.8 143 632-814 96-257 (324)
280 2qt1_A Nicotinamide riboside k 97.2 0.00022 7.6E-09 75.1 4.5 30 637-666 16-45 (207)
281 2q6t_A DNAB replication FORK h 97.1 0.0014 4.7E-08 77.7 11.3 169 632-831 190-397 (444)
282 3ice_A Transcription terminati 97.1 9.3E-05 3.2E-09 83.5 0.3 53 601-665 131-197 (422)
283 3ney_A 55 kDa erythrocyte memb 97.0 0.00023 7.9E-09 73.8 2.9 28 639-666 16-43 (197)
284 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00033 1.1E-08 69.6 3.7 30 633-663 15-44 (149)
285 1knq_A Gluconate kinase; ALFA/ 97.0 0.00029 9.9E-09 71.9 3.1 36 640-681 6-41 (175)
286 3tqc_A Pantothenate kinase; bi 97.0 3.9E-05 1.3E-09 86.1 -4.1 39 628-666 72-116 (321)
287 3kl4_A SRP54, signal recogniti 96.9 0.0011 3.7E-08 77.3 7.2 25 641-665 96-120 (433)
288 2qnr_A Septin-2, protein NEDD5 96.9 0.0002 6.8E-09 80.2 0.9 54 69-130 111-165 (301)
289 2qby_A CDC6 homolog 1, cell di 96.8 0.00042 1.4E-08 80.3 3.4 26 640-665 43-68 (386)
290 1kag_A SKI, shikimate kinase I 96.8 0.00037 1.3E-08 70.9 2.5 27 641-667 3-29 (173)
291 3llm_A ATP-dependent RNA helic 96.8 0.00033 1.1E-08 75.4 2.2 66 757-824 162-228 (235)
292 3cf0_A Transitional endoplasmi 96.8 0.00087 3E-08 75.0 5.5 30 637-666 44-73 (301)
293 1ypw_A Transitional endoplasmi 96.8 0.001 3.4E-08 84.7 6.4 31 637-667 233-263 (806)
294 2f1r_A Molybdopterin-guanine d 96.7 0.00017 5.8E-09 73.4 -1.1 40 47-92 85-124 (171)
295 1rz3_A Hypothetical protein rb 96.7 0.0006 2E-08 71.4 3.1 29 638-666 18-46 (201)
296 3jvv_A Twitching mobility prot 96.7 0.00097 3.3E-08 76.1 4.4 60 81-150 188-247 (356)
297 1odf_A YGR205W, hypothetical 3 96.6 0.00029 9.8E-09 78.2 -0.7 57 47-106 107-169 (290)
298 3lxx_A GTPase IMAP family memb 96.5 0.01 3.5E-07 63.7 11.4 42 772-813 111-154 (239)
299 1u94_A RECA protein, recombina 96.5 0.032 1.1E-06 63.5 15.3 33 632-664 51-85 (356)
300 4eaq_A DTMP kinase, thymidylat 96.5 0.0013 4.3E-08 70.5 3.4 35 632-666 13-50 (229)
301 2gj8_A MNME, tRNA modification 96.4 0.0029 1E-07 64.2 5.9 27 640-666 2-28 (172)
302 3qks_A DNA double-strand break 96.4 0.0016 5.4E-08 68.3 3.7 29 634-663 16-44 (203)
303 2b8t_A Thymidine kinase; deoxy 96.4 0.0042 1.4E-07 65.7 6.7 53 773-830 89-150 (223)
304 3m6a_A ATP-dependent protease 96.3 0.00071 2.4E-08 82.2 0.7 48 630-680 97-144 (543)
305 2jeo_A Uridine-cytidine kinase 96.3 0.00086 3E-08 72.6 1.2 83 56-164 106-189 (245)
306 3h4m_A Proteasome-activating n 96.3 0.0054 1.9E-07 67.8 7.6 28 639-666 48-75 (285)
307 3cr8_A Sulfate adenylyltranfer 96.3 0.00094 3.2E-08 80.6 1.3 43 637-681 364-408 (552)
308 2pez_A Bifunctional 3'-phospho 96.3 0.0018 6.3E-08 66.2 3.3 27 640-666 3-29 (179)
309 1m2o_B GTP-binding protein SAR 96.2 0.0035 1.2E-07 64.8 5.2 34 631-665 13-46 (190)
310 2p67_A LAO/AO transport system 96.2 0.00085 2.9E-08 76.5 0.6 38 629-666 43-80 (341)
311 3bgw_A DNAB-like replicative h 96.2 0.0077 2.6E-07 71.0 8.6 33 632-664 187-219 (444)
312 1cke_A CK, MSSA, protein (cyti 96.2 0.002 6.7E-08 68.7 3.1 56 642-697 5-73 (227)
313 1y63_A LMAJ004144AAA protein; 96.2 0.0021 7.2E-08 66.2 3.2 32 634-665 2-33 (184)
314 1l8q_A Chromosomal replication 96.2 0.0099 3.4E-07 67.1 9.1 45 771-815 96-141 (324)
315 3szr_A Interferon-induced GTP- 96.2 0.00054 1.9E-08 84.3 -1.7 88 75-162 132-237 (608)
316 1mky_A Probable GTP-binding pr 96.2 0.0032 1.1E-07 74.4 5.0 38 644-681 182-229 (439)
317 2qor_A Guanylate kinase; phosp 96.1 0.0022 7.6E-08 67.2 2.9 29 638-666 8-36 (204)
318 1n0w_A DNA repair protein RAD5 96.0 0.0074 2.5E-07 64.8 6.5 79 72-150 99-210 (243)
319 1f6b_A SAR1; gtpases, N-termin 95.9 0.0013 4.6E-08 68.5 0.2 35 630-665 14-48 (198)
320 2qag_A Septin-2, protein NEDD5 95.9 0.00089 3E-08 76.9 -1.6 32 629-666 30-61 (361)
321 3ec2_A DNA replication protein 95.9 0.0059 2E-07 62.4 4.8 50 85-135 96-146 (180)
322 3d8b_A Fidgetin-like protein 1 95.9 0.031 1.1E-06 63.9 11.3 27 640-666 115-141 (357)
323 2ewv_A Twitching motility prot 95.8 0.00012 4E-09 84.6 -9.7 70 56-128 269-348 (372)
324 2i1q_A DNA repair and recombin 95.7 0.029 1E-06 63.1 10.3 33 632-664 87-120 (322)
325 2www_A Methylmalonic aciduria 95.7 0.0044 1.5E-07 70.7 3.3 27 640-666 72-98 (349)
326 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0014 4.8E-08 73.7 -0.9 35 631-665 11-47 (359)
327 2if2_A Dephospho-COA kinase; a 95.7 0.004 1.4E-07 65.0 2.7 21 644-664 3-23 (204)
328 2v1u_A Cell division control p 95.6 0.015 5.2E-07 67.0 7.7 26 640-665 42-67 (387)
329 2bdt_A BH3686; alpha-beta prot 95.5 0.0005 1.7E-08 71.2 -4.9 82 73-161 96-183 (189)
330 2yvu_A Probable adenylyl-sulfa 95.5 0.0054 1.9E-07 63.0 2.7 29 638-666 9-37 (186)
331 1lw7_A Transcriptional regulat 95.4 0.0015 5.1E-08 75.3 -1.9 87 71-161 258-354 (365)
332 1np6_A Molybdopterin-guanine d 95.4 0.0063 2.2E-07 61.8 3.0 37 643-679 7-44 (174)
333 2wjg_A FEOB, ferrous iron tran 95.4 0.014 4.8E-07 59.7 5.6 22 644-665 9-30 (188)
334 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.039 1.3E-06 59.8 9.4 26 640-665 37-62 (262)
335 1m7g_A Adenylylsulfate kinase; 95.4 0.0062 2.1E-07 64.1 2.7 29 638-666 21-49 (211)
336 2wji_A Ferrous iron transport 95.3 0.0079 2.7E-07 60.3 3.4 23 644-666 5-27 (165)
337 3cm0_A Adenylate kinase; ATP-b 95.3 0.0075 2.6E-07 61.9 3.2 25 640-664 2-26 (186)
338 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.13 4.4E-06 57.8 13.5 27 640-666 43-69 (322)
339 3t61_A Gluconokinase; PSI-biol 95.3 0.0065 2.2E-07 63.4 2.5 24 642-665 18-41 (202)
340 1q57_A DNA primase/helicase; d 95.2 0.12 4E-06 62.1 13.7 33 632-664 232-264 (503)
341 1sxj_C Activator 1 40 kDa subu 95.1 0.0024 8E-08 72.9 -1.6 38 629-666 31-70 (340)
342 1xp8_A RECA protein, recombina 95.1 0.14 4.8E-06 58.4 13.0 28 637-664 69-96 (366)
343 1qhx_A CPT, protein (chloramph 95.0 0.012 3.9E-07 59.9 3.5 25 642-666 3-27 (178)
344 3kb2_A SPBC2 prophage-derived 95.0 0.011 3.7E-07 59.6 3.2 22 644-665 3-24 (173)
345 3r20_A Cytidylate kinase; stru 94.9 0.011 3.9E-07 62.8 3.2 23 643-665 10-32 (233)
346 1q3t_A Cytidylate kinase; nucl 94.9 0.011 3.7E-07 63.4 3.1 28 638-665 12-39 (236)
347 2ohf_A Protein OLA1, GTP-bindi 94.9 0.0098 3.3E-07 68.3 2.8 45 636-680 16-69 (396)
348 2zej_A Dardarin, leucine-rich 94.9 0.012 4.1E-07 60.2 3.1 22 644-665 4-25 (184)
349 3io5_A Recombination and repai 94.8 0.09 3.1E-06 58.0 10.0 25 637-662 24-48 (333)
350 2qag_C Septin-7; cell cycle, c 94.8 0.0082 2.8E-07 69.8 1.7 54 71-130 118-175 (418)
351 1lv7_A FTSH; alpha/beta domain 94.8 0.0096 3.3E-07 64.7 2.1 33 632-666 37-69 (257)
352 2p5t_B PEZT; postsegregational 94.6 0.0083 2.8E-07 65.1 1.3 45 632-681 23-67 (253)
353 2rhm_A Putative kinase; P-loop 94.6 0.015 5.1E-07 59.9 3.2 25 640-664 3-27 (193)
354 1kht_A Adenylate kinase; phosp 94.6 0.016 5.6E-07 59.4 3.3 24 642-665 3-26 (192)
355 1ex7_A Guanylate kinase; subst 94.6 0.015 5.2E-07 59.6 3.0 22 644-665 3-24 (186)
356 1j8m_F SRP54, signal recogniti 94.6 0.01 3.6E-07 65.9 1.8 33 633-666 89-122 (297)
357 2ffh_A Protein (FFH); SRP54, s 94.5 0.015 5.1E-07 67.6 3.1 45 633-681 91-135 (425)
358 1xx6_A Thymidine kinase; NESG, 94.4 0.042 1.4E-06 56.6 5.8 53 773-830 81-142 (191)
359 2ze6_A Isopentenyl transferase 94.3 0.018 6.2E-07 62.4 3.0 24 643-666 2-25 (253)
360 3trf_A Shikimate kinase, SK; a 94.3 0.021 7.2E-07 58.4 3.4 25 641-665 4-28 (185)
361 3lw7_A Adenylate kinase relate 94.2 0.021 7.2E-07 57.5 3.2 19 644-662 3-21 (179)
362 1vht_A Dephospho-COA kinase; s 94.2 0.023 8E-07 59.9 3.6 24 641-664 3-26 (218)
363 3iij_A Coilin-interacting nucl 94.2 0.02 7E-07 58.3 2.9 25 640-664 9-33 (180)
364 2v54_A DTMP kinase, thymidylat 94.1 0.025 8.6E-07 58.8 3.5 26 641-666 3-28 (204)
365 1sxj_E Activator 1 40 kDa subu 94.1 0.069 2.4E-06 60.8 7.4 63 86-157 131-193 (354)
366 2ius_A DNA translocase FTSK; n 94.0 0.032 1.1E-06 66.2 4.6 96 33-134 233-344 (512)
367 1gvn_B Zeta; postsegregational 94.0 0.025 8.4E-07 62.6 3.3 27 640-666 31-57 (287)
368 2jaq_A Deoxyguanosine kinase; 94.0 0.025 8.6E-07 58.7 3.2 23 644-666 2-24 (205)
369 2plr_A DTMP kinase, probable t 94.0 0.029 9.8E-07 58.6 3.6 25 641-665 3-27 (213)
370 2bbw_A Adenylate kinase 4, AK4 93.9 0.01 3.4E-07 64.1 -0.0 43 70-119 151-198 (246)
371 2wwf_A Thymidilate kinase, put 93.9 0.028 9.5E-07 58.8 3.4 25 640-664 8-32 (212)
372 1lvg_A Guanylate kinase, GMP k 93.8 0.00092 3.1E-08 69.8 -8.3 56 82-147 116-172 (198)
373 1ly1_A Polynucleotide kinase; 93.8 0.031 1.1E-06 56.7 3.4 22 643-664 3-24 (181)
374 1ko7_A HPR kinase/phosphatase; 93.8 0.049 1.7E-06 60.3 5.2 37 628-665 131-167 (314)
375 2c95_A Adenylate kinase 1; tra 93.8 0.028 9.7E-07 57.9 3.1 26 640-665 7-32 (196)
376 1xjc_A MOBB protein homolog; s 93.8 0.028 9.5E-07 56.6 2.9 23 643-665 5-27 (169)
377 2j9r_A Thymidine kinase; TK1, 93.8 0.082 2.8E-06 55.0 6.5 53 773-830 101-162 (214)
378 1via_A Shikimate kinase; struc 93.7 0.028 9.7E-07 56.9 3.0 22 644-665 6-27 (175)
379 3lda_A DNA repair protein RAD5 93.7 0.048 1.6E-06 63.0 5.2 74 77-150 259-364 (400)
380 1rj9_A FTSY, signal recognitio 93.7 0.014 4.8E-07 65.0 0.6 55 72-131 203-257 (304)
381 3k53_A Ferrous iron transport 93.7 0.027 9.3E-07 61.7 2.9 23 644-666 5-27 (271)
382 1gtv_A TMK, thymidylate kinase 93.6 0.016 5.4E-07 60.9 0.8 23 644-666 2-24 (214)
383 1nn5_A Similar to deoxythymidy 93.6 0.033 1.1E-06 58.4 3.3 25 640-664 7-31 (215)
384 1uf9_A TT1252 protein; P-loop, 93.6 0.035 1.2E-06 57.6 3.4 23 643-665 9-31 (203)
385 4b4t_K 26S protease regulatory 93.6 0.3 1E-05 56.7 11.5 27 640-666 204-230 (428)
386 3co5_A Putative two-component 93.6 0.12 4.2E-06 50.3 7.1 42 773-815 75-116 (143)
387 3vfd_A Spastin; ATPase, microt 93.5 0.25 8.6E-06 57.0 10.8 27 640-666 146-172 (389)
388 3cmw_A Protein RECA, recombina 93.5 0.64 2.2E-05 62.6 15.8 34 632-665 720-755 (1706)
389 2kjq_A DNAA-related protein; s 93.5 0.088 3E-06 51.8 5.9 48 85-134 79-127 (149)
390 2bwj_A Adenylate kinase 5; pho 93.5 0.016 5.4E-07 60.0 0.5 27 639-665 9-35 (199)
391 4b4t_I 26S protease regulatory 93.4 0.31 1.1E-05 56.1 11.1 27 640-666 214-240 (437)
392 1tev_A UMP-CMP kinase; ploop, 93.4 0.041 1.4E-06 56.5 3.5 23 642-664 3-25 (196)
393 1nks_A Adenylate kinase; therm 93.3 0.036 1.2E-06 56.8 3.0 22 644-665 3-24 (194)
394 2r6a_A DNAB helicase, replicat 93.1 0.13 4.5E-06 60.8 7.8 80 70-151 294-401 (454)
395 1udx_A The GTP-binding protein 93.1 0.022 7.7E-07 66.1 1.1 71 69-144 250-320 (416)
396 1aky_A Adenylate kinase; ATP:A 93.1 0.046 1.6E-06 57.6 3.5 26 640-665 2-27 (220)
397 4b4t_J 26S protease regulatory 93.0 0.35 1.2E-05 55.4 10.8 67 771-843 239-321 (405)
398 2vli_A Antibiotic resistance p 93.0 0.036 1.2E-06 56.4 2.3 25 641-665 4-28 (183)
399 2z0h_A DTMP kinase, thymidylat 93.0 0.047 1.6E-06 56.2 3.3 22 644-665 2-23 (197)
400 3q72_A GTP-binding protein RAD 92.9 0.044 1.5E-06 54.4 2.9 23 644-666 4-26 (166)
401 3b1v_A Ferrous iron uptake tra 92.9 0.049 1.7E-06 59.6 3.3 23 644-666 5-27 (272)
402 2orv_A Thymidine kinase; TP4A 92.8 0.34 1.2E-05 50.9 9.5 53 772-830 89-150 (234)
403 2ged_A SR-beta, signal recogni 92.7 0.044 1.5E-06 56.1 2.6 23 644-666 50-72 (193)
404 1zd8_A GTP:AMP phosphotransfer 92.7 0.051 1.7E-06 57.7 3.2 26 640-665 5-30 (227)
405 2nzj_A GTP-binding protein REM 92.7 0.053 1.8E-06 54.3 3.1 23 644-666 6-28 (175)
406 1fzq_A ADP-ribosylation factor 92.7 0.05 1.7E-06 55.3 2.9 23 644-666 18-40 (181)
407 1z2a_A RAS-related protein RAB 92.6 0.049 1.7E-06 54.1 2.7 22 644-665 7-28 (168)
408 2erx_A GTP-binding protein DI- 92.6 0.056 1.9E-06 53.9 3.1 22 644-665 5-26 (172)
409 3ake_A Cytidylate kinase; CMP 92.6 0.052 1.8E-06 56.5 2.9 22 644-665 4-25 (208)
410 2qmh_A HPR kinase/phosphorylas 92.5 0.099 3.4E-06 53.6 4.7 35 631-666 24-58 (205)
411 2cdn_A Adenylate kinase; phosp 92.5 0.064 2.2E-06 55.6 3.5 25 641-665 19-43 (201)
412 3lxw_A GTPase IMAP family memb 92.5 0.056 1.9E-06 58.3 3.1 23 644-666 23-45 (247)
413 3q85_A GTP-binding protein REM 92.5 0.059 2E-06 53.7 3.1 21 645-665 5-25 (169)
414 3fb4_A Adenylate kinase; psych 92.4 0.061 2.1E-06 56.4 3.3 21 644-664 2-22 (216)
415 1zuh_A Shikimate kinase; alpha 92.4 0.063 2.2E-06 53.8 3.2 23 643-665 8-30 (168)
416 3tw8_B RAS-related protein RAB 92.4 0.059 2E-06 54.3 3.0 23 644-666 11-33 (181)
417 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.069 2.3E-06 58.0 3.6 25 641-665 3-27 (260)
418 2dyk_A GTP-binding protein; GT 92.3 0.055 1.9E-06 53.3 2.6 23 644-666 3-25 (161)
419 3ihw_A Centg3; RAS, centaurin, 92.3 0.11 3.9E-06 52.8 5.1 22 644-665 22-43 (184)
420 1kao_A RAP2A; GTP-binding prot 92.3 0.055 1.9E-06 53.5 2.6 22 644-665 5-26 (167)
421 1ukz_A Uridylate kinase; trans 92.3 0.069 2.3E-06 55.4 3.4 24 642-665 15-38 (203)
422 2ce2_X GTPase HRAS; signaling 92.3 0.053 1.8E-06 53.5 2.5 23 644-666 5-27 (166)
423 1u8z_A RAS-related protein RAL 92.3 0.057 2E-06 53.5 2.7 22 644-665 6-27 (168)
424 1zak_A Adenylate kinase; ATP:A 92.3 0.056 1.9E-06 57.1 2.7 25 641-665 4-28 (222)
425 2pbr_A DTMP kinase, thymidylat 92.3 0.066 2.3E-06 54.9 3.2 22 644-665 2-23 (195)
426 1svi_A GTP-binding protein YSX 92.2 0.06 2.1E-06 55.2 2.8 23 644-666 25-47 (195)
427 1e6c_A Shikimate kinase; phosp 92.2 0.059 2E-06 54.2 2.7 23 643-665 3-25 (173)
428 3c8u_A Fructokinase; YP_612366 92.1 0.016 5.4E-07 60.8 -1.8 49 50-99 91-140 (208)
429 1z0j_A RAB-22, RAS-related pro 92.1 0.061 2.1E-06 53.5 2.6 23 644-666 8-30 (170)
430 3dl0_A Adenylate kinase; phosp 92.1 0.07 2.4E-06 56.0 3.3 22 644-665 2-23 (216)
431 1jal_A YCHF protein; nucleotid 92.1 0.057 1.9E-06 61.3 2.6 24 642-665 2-25 (363)
432 2grj_A Dephospho-COA kinase; T 92.1 0.073 2.5E-06 54.9 3.3 24 642-665 12-35 (192)
433 1z08_A RAS-related protein RAB 92.1 0.061 2.1E-06 53.6 2.6 22 644-665 8-29 (170)
434 1g16_A RAS-related protein SEC 92.1 0.058 2E-06 53.7 2.5 23 644-666 5-27 (170)
435 2pt5_A Shikimate kinase, SK; a 92.1 0.074 2.5E-06 53.2 3.2 21 644-664 2-22 (168)
436 1qf9_A UMP/CMP kinase, protein 92.1 0.075 2.6E-06 54.4 3.4 23 642-664 6-28 (194)
437 1ek0_A Protein (GTP-binding pr 92.1 0.063 2.1E-06 53.4 2.7 23 644-666 5-27 (170)
438 1c1y_A RAS-related protein RAP 92.0 0.063 2.2E-06 53.2 2.7 22 644-665 5-26 (167)
439 2lkc_A Translation initiation 92.0 0.083 2.8E-06 53.1 3.6 25 642-666 8-32 (178)
440 1wms_A RAB-9, RAB9, RAS-relate 92.0 0.063 2.1E-06 54.0 2.6 23 644-666 9-31 (177)
441 3tlx_A Adenylate kinase 2; str 92.0 0.079 2.7E-06 56.9 3.5 24 641-664 28-51 (243)
442 3cmw_A Protein RECA, recombina 92.0 1.2 4E-05 60.2 15.2 33 632-664 371-405 (1706)
443 3pqc_A Probable GTP-binding pr 92.0 0.066 2.3E-06 54.7 2.8 23 644-666 25-47 (195)
444 2iyv_A Shikimate kinase, SK; t 92.0 0.062 2.1E-06 54.8 2.6 23 643-665 3-25 (184)
445 1moz_A ARL1, ADP-ribosylation 91.9 0.056 1.9E-06 54.7 2.2 23 643-665 19-41 (183)
446 1ky3_A GTP-binding protein YPT 91.9 0.065 2.2E-06 54.0 2.6 23 644-666 10-32 (182)
447 2cxx_A Probable GTP-binding pr 91.9 0.069 2.4E-06 54.3 2.9 22 645-666 4-25 (190)
448 2dr3_A UPF0273 protein PH0284; 91.9 0.26 8.9E-06 52.5 7.6 61 88-148 127-196 (247)
449 3iby_A Ferrous iron transport 91.8 0.071 2.4E-06 57.8 2.9 23 644-666 3-25 (256)
450 1wf3_A GTP-binding protein; GT 91.8 0.08 2.7E-06 58.9 3.4 26 640-666 6-31 (301)
451 3cmu_A Protein RECA, recombina 91.8 0.97 3.3E-05 61.8 14.2 33 632-664 371-405 (2050)
452 2fn4_A P23, RAS-related protei 91.8 0.066 2.2E-06 53.9 2.5 22 644-665 11-32 (181)
453 3t5d_A Septin-7; GTP-binding p 91.7 0.072 2.5E-06 58.4 2.9 22 644-665 10-31 (274)
454 3v9p_A DTMP kinase, thymidylat 91.7 0.072 2.4E-06 56.5 2.7 27 639-665 22-48 (227)
455 1r2q_A RAS-related protein RAB 91.7 0.074 2.5E-06 52.8 2.7 22 644-665 8-29 (170)
456 2hxs_A RAB-26, RAS-related pro 91.6 0.082 2.8E-06 53.1 3.0 22 644-665 8-29 (178)
457 4ag6_A VIRB4 ATPase, type IV s 91.6 0.074 2.5E-06 61.6 2.9 44 773-816 262-308 (392)
458 3cbq_A GTP-binding protein REM 91.6 0.076 2.6E-06 54.8 2.7 22 644-665 25-46 (195)
459 2oil_A CATX-8, RAS-related pro 91.6 0.075 2.6E-06 54.4 2.7 22 644-665 27-48 (193)
460 1upt_A ARL1, ADP-ribosylation 91.5 0.077 2.6E-06 52.9 2.7 22 644-665 9-30 (171)
461 4dsu_A GTPase KRAS, isoform 2B 91.5 0.076 2.6E-06 53.9 2.6 23 644-666 6-28 (189)
462 3iev_A GTP-binding protein ERA 91.5 0.089 3E-06 58.7 3.4 23 644-666 12-34 (308)
463 1r8s_A ADP-ribosylation factor 91.5 0.079 2.7E-06 52.4 2.7 21 645-665 3-23 (164)
464 2dby_A GTP-binding protein; GD 91.5 0.072 2.5E-06 60.8 2.6 21 645-665 4-24 (368)
465 4edh_A DTMP kinase, thymidylat 91.5 0.11 3.6E-06 54.7 3.7 26 640-665 4-29 (213)
466 1uj2_A Uridine-cytidine kinase 91.4 0.091 3.1E-06 56.7 3.3 22 643-664 23-44 (252)
467 1a7j_A Phosphoribulokinase; tr 91.4 0.055 1.9E-06 59.8 1.5 24 641-664 4-27 (290)
468 3bc1_A RAS-related protein RAB 91.4 0.08 2.8E-06 53.9 2.7 22 644-665 13-34 (195)
469 3clv_A RAB5 protein, putative; 91.3 0.081 2.8E-06 54.4 2.6 22 644-665 9-30 (208)
470 3bos_A Putative DNA replicatio 91.3 0.1 3.4E-06 55.4 3.5 44 772-815 103-148 (242)
471 2f7s_A C25KG, RAS-related prot 91.3 0.19 6.4E-06 52.5 5.4 24 644-667 27-50 (217)
472 2g6b_A RAS-related protein RAB 91.2 0.086 2.9E-06 53.1 2.7 23 644-666 12-34 (180)
473 2y8e_A RAB-protein 6, GH09086P 91.2 0.082 2.8E-06 53.1 2.5 22 644-665 16-37 (179)
474 1ksh_A ARF-like protein 2; sma 91.2 0.1 3.4E-06 53.0 3.1 25 642-666 18-42 (186)
475 3a1s_A Iron(II) transport prot 91.1 0.096 3.3E-06 56.8 3.1 23 644-666 7-29 (258)
476 3t1o_A Gliding protein MGLA; G 91.1 0.088 3E-06 53.8 2.7 23 644-666 16-38 (198)
477 2xb4_A Adenylate kinase; ATP-b 91.1 0.1 3.5E-06 55.2 3.2 21 644-664 2-22 (223)
478 2f6r_A COA synthase, bifunctio 91.1 0.095 3.2E-06 57.7 3.0 21 643-663 76-96 (281)
479 3umf_A Adenylate kinase; rossm 91.1 0.094 3.2E-06 55.1 2.9 27 639-665 26-52 (217)
480 3con_A GTPase NRAS; structural 91.1 0.09 3.1E-06 53.6 2.7 23 644-666 23-45 (190)
481 1z0f_A RAB14, member RAS oncog 91.1 0.091 3.1E-06 52.7 2.7 23 644-666 17-39 (179)
482 2a9k_A RAS-related protein RAL 91.1 0.091 3.1E-06 53.2 2.7 22 644-665 20-41 (187)
483 3be4_A Adenylate kinase; malar 91.0 0.099 3.4E-06 55.0 3.0 24 642-665 5-28 (217)
484 2efe_B Small GTP-binding prote 90.9 0.095 3.2E-06 52.8 2.6 22 644-665 14-35 (181)
485 3i8s_A Ferrous iron transport 90.9 0.098 3.4E-06 57.3 2.9 23 644-666 5-27 (274)
486 1nrj_B SR-beta, signal recogni 90.9 0.094 3.2E-06 54.9 2.7 23 644-666 14-36 (218)
487 2il1_A RAB12; G-protein, GDP, 90.9 0.11 3.7E-06 53.3 3.0 23 644-666 28-50 (192)
488 2xtp_A GTPase IMAP family memb 90.9 0.099 3.4E-06 56.6 2.9 23 644-666 24-46 (260)
489 2bme_A RAB4A, RAS-related prot 90.8 0.093 3.2E-06 53.2 2.5 22 644-665 12-33 (186)
490 3lv8_A DTMP kinase, thymidylat 90.8 0.12 4E-06 55.2 3.3 25 641-665 26-50 (236)
491 2gf9_A RAS-related protein RAB 90.8 0.098 3.4E-06 53.4 2.7 23 644-666 24-46 (189)
492 3a8t_A Adenylate isopentenyltr 90.8 0.16 5.5E-06 56.8 4.4 27 641-667 39-65 (339)
493 1m7b_A RND3/RHOE small GTP-bin 90.8 0.096 3.3E-06 53.2 2.5 22 644-665 9-30 (184)
494 2bov_A RAla, RAS-related prote 90.7 0.1 3.5E-06 53.9 2.7 22 644-665 16-37 (206)
495 2fg5_A RAB-22B, RAS-related pr 90.7 0.097 3.3E-06 53.6 2.5 23 644-666 25-47 (192)
496 2h57_A ADP-ribosylation factor 90.7 0.1 3.4E-06 53.4 2.5 23 644-666 23-45 (190)
497 3bwd_D RAC-like GTP-binding pr 90.7 0.12 4.1E-06 52.1 3.1 23 644-666 10-32 (182)
498 2cjw_A GTP-binding protein GEM 90.7 0.1 3.6E-06 53.6 2.7 21 644-664 8-28 (192)
499 1vg8_A RAS-related protein RAB 90.6 0.1 3.5E-06 54.0 2.6 23 644-666 10-32 (207)
500 4fcw_A Chaperone protein CLPB; 90.6 0.11 3.9E-06 57.7 3.2 26 641-666 46-71 (311)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-64 Score=672.92 Aligned_cols=218 Identities=26% Similarity=0.358 Sum_probs=183.7
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
..+.++|+||+|+|+.+ .+.++|+||||+|+|||.+||+||||||||||+++|.|..+ +.+|+|.+||
T Consensus 1073 ~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG 1140 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDG 1140 (1321)
T ss_dssp CCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETT
T ss_pred CCCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECC
Confidence 34679999999999643 23458999999999999999999999999999999999876 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------Ccccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~ 749 (1202)
.+++. ..+|+.++||||++.+|+ .|++|||.|+.. +.+.++++ +.++++..++ .+-.|+.+|
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEec
Confidence 98765 457889999999999986 699999987531 22334333 5566666655 345688888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +|+|+|+++|+++ ....||||++|
T Consensus 1213 e~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vl 1288 (1321)
T 4f4c_A 1213 DRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVV 1288 (1321)
T ss_dssp TTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEE
T ss_pred CCC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEE
Confidence 765 4699999999999999999999999999999999999999999998864 5899999999987 36789999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
+ +|+++.+|+++
T Consensus 1289 d-~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1289 S-NGTIIEKGTHT 1300 (1321)
T ss_dssp S-SSSEEEEECHH
T ss_pred E-CCEEEEECCHH
Confidence 8 58999999974
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.6e-58 Score=611.30 Aligned_cols=217 Identities=27% Similarity=0.375 Sum_probs=176.8
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++++||+++|+.+ .+.++|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 1028 ~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSS
T ss_pred CCcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCE
Confidence 4579999999998632 12358999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~ 750 (1202)
+++. ..+|+.++||+|++.+++ .||+||+.++... ...+.++ +.+.++..+ +.+..|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCC
Confidence 8754 346778999999998774 7999999875311 1223322 233333333 34456777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|+||+|||||||||+.+++.+.+.|+++ .+|+|||+++|+++. + ..|||+++|+
T Consensus 1168 ~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 KG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred CC-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999885 469999999999973 4 6699999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+|+++..|+++
T Consensus 1244 -~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1244 -NGKVKEHGTHQ 1254 (1284)
T ss_dssp -TBEEEEEECHH
T ss_pred -CCEEEEECCHH
Confidence 58999999974
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.1e-45 Score=446.18 Aligned_cols=202 Identities=23% Similarity=0.279 Sum_probs=167.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. + ..|+++|+++++||+++|+||||||||||+|+|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 477888887762 1 258999999999999999999999999999999998763 3677654
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.+.++|++|+....+.+||.|++....... ...+++++++++.+++.+..++.+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 235899999988778899999886541100 011245788999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 840 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~ 840 (1202)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++ +.|.|||++|||++ .+..++||+++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999986 57789999999973 278888999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 865
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-44 Score=435.63 Aligned_cols=216 Identities=20% Similarity=0.243 Sum_probs=171.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++..+. + ..|+++|+++++||+++|+||||||||||+|+|+|... +.+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---
Confidence 467888887663 1 24788899999999999999999999999999999876 3478888654
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
+.++|++|+......+||+||+.+...... . . ....++++++.+++.+..++.+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDAL--S-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT--C-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhcc--c-h---hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 247899998777678999999987421110 0 1 1234678889999988777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 840 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~ 840 (1202)
||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++..+|||+++|+. .|.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5899999999986 57789999999974 245666676
Q ss_pred CCccchhHHHHHhhC
Q 000979 841 LGRHSCHLISYFEAI 855 (1202)
Q Consensus 841 ~~~~~~~~~~~f~~~ 855 (1202)
+.+.......++...
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 654333344555443
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.2e-44 Score=436.05 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=166.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. + ..|+++|+++++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 477888887763 1 258999999999999999999999999999999998763 3677764
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
...++|++|+....+.+||.|++........ . .++.++++++.+++.+..++.+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 2358999999887788999998865311110 0 1234678899999987766654 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 840 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~ 840 (1202)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||++|||++ ++..+|||+++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999874 5999999999986 57789999999974 278888999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+++
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
Confidence 864
No 6
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.6e-44 Score=406.98 Aligned_cols=220 Identities=22% Similarity=0.291 Sum_probs=192.3
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+++|... .+...+|+||||+|++||++||+||||||||||+|+|+|... +.+|+|.++|.+
T Consensus 23 ~mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~ 91 (366)
T 3tui_C 23 HMIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQE 91 (366)
T ss_dssp CCEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 358999999999621 134679999999999999999999999999999999999877 458999999998
Q ss_pred CCcc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 682 KKQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 682 ~~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
+... ..++.+|||+|++.+++.+||+||+.++...+ ..+.++.+++++++++.+||.+..++.+ .+
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~ 163 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SN 163 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TT
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 7531 23567999999999999999999999987654 2345666778999999999998877763 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||+|||||+.+|++|||||||||||+.++..++++|++++++ |.|||++||+++ .+.++|||+++|++ |+
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~ 241 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GE 241 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999754 999999999986 57789999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|++.
T Consensus 242 iv~~g~~~ 249 (366)
T 3tui_C 242 LIEQDTVS 249 (366)
T ss_dssp EEECCBHH
T ss_pred EEEEcCHH
Confidence 99999874
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-44 Score=435.20 Aligned_cols=190 Identities=18% Similarity=0.199 Sum_probs=155.9
Q ss_pred EEeecceEEEeCC-----eEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 000979 630 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 704 (1202)
Q Consensus 630 ~iL~~vs~~i~~G-----e~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 704 (1202)
.+++|+||++++| |+++|+||||||||||+++|+|...+. +|+ ... +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCc------Ccc----CCcEEEecccccccCCc
Confidence 4688899999888 789999999999999999999987633 453 111 23589999987766678
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 705 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
||+|++... .+. .... ...++++++.+++.+..++.+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 1111 234678999999998877764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcCCCcc
Q 000979 785 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGRH 844 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~~~~ 844 (1202)
|||+.++..+++.|++++ +.|.|||++|||++ ++..++||+++|+. .|+++..|+|.+.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 999999999999999986 45999999999986 57889999999974 2789999999764
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.8e-44 Score=407.46 Aligned_cols=216 Identities=25% Similarity=0.369 Sum_probs=191.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 378999999883 3569999999999999999999999999999999999877 4589999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+.+.+ ..+.++.+++++++++.++|.+..++.+ ++||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHH
Confidence 54 234567999999999999999999999987654 2455666778999999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|+||||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999765 999999999986 68899999999985 89999999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+.+
T Consensus 218 ~~~ 220 (381)
T 3rlf_A 218 PLE 220 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.8e-43 Score=384.60 Aligned_cols=221 Identities=23% Similarity=0.337 Sum_probs=186.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|+.. ...+.+|+||||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 6789999998521 123569999999999999999999999999999999999877 45899999998764
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCC
Q 000979 684 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSG 755 (1202)
Q Consensus 684 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~ 755 (1202)
... .++.+|||+|++.+++.+||+||+.++...+.......++.++++.++++.+++.+.. +.. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 311 1346999999999999999999999987654322344556667788999999998643 554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.|||+++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 5689999999985 89
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
++..|++.+
T Consensus 223 i~~~~~~~~ 231 (235)
T 3tif_A 223 VEREEKLRG 231 (235)
T ss_dssp EEEEEECC-
T ss_pred EEEEcChhh
Confidence 999998753
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.5e-44 Score=405.96 Aligned_cols=216 Identities=25% Similarity=0.400 Sum_probs=188.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||||+|+|... +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478999999883 3569999999999999999999999999999999999877 4589999999876
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 ----KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ----~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.+..++.+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 22 234577999999999999999999999975433 2234555677899999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|.|+|++|||++ ++..++||+++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999888775 46999999999986 68899999999985 8999
Q ss_pred EEcCCCc
Q 000979 837 YVGPLGR 843 (1202)
Q Consensus 837 ~~G~~~~ 843 (1202)
..|++++
T Consensus 219 ~~g~~~e 225 (359)
T 3fvq_A 219 QTASPHE 225 (359)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9999753
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-43 Score=392.72 Aligned_cols=217 Identities=25% Similarity=0.379 Sum_probs=187.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|+ ++..+|+||||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 488999999884 22358999999999999999999999999999999999876 4589999999987
Q ss_pred C--c---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 K--Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~--~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
. . ...++.+|||+|++. .+..+||+||+.|+.... ..+.++.+++++++++.++|.+..++.+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 234678999999863 444789999999987543 2345566678999999999998887764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.++|||+++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 57789999999985 899
Q ss_pred EEEcCCCc
Q 000979 836 IYVGPLGR 843 (1202)
Q Consensus 836 ~~~G~~~~ 843 (1202)
++.|++.+
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99999753
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.7e-43 Score=387.04 Aligned_cols=215 Identities=25% Similarity=0.345 Sum_probs=185.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 389999999883 2468999999999999999999999999999999999876 4589999999876
Q ss_pred C--c---ccccceEEEeecCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 K--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
. . ..+++.++||+|++.+++.+||+||+.++. ... ....++.+++++++++.+++.+..++.+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 322 2234445567899999999988777664 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 56778999999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
+.|+++
T Consensus 239 ~~g~~~ 244 (263)
T 2olj_A 239 EEGKPE 244 (263)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999863
No 13
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.6e-43 Score=378.22 Aligned_cols=213 Identities=22% Similarity=0.267 Sum_probs=183.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378999999883 2468999999999999999999999999999999999876 4589999999886
Q ss_pred Ccc------ccc-ceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQE------TFA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~------~~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
... ..+ +.++||+|++.+++.+||+||+.++...+ ....++.+++++++++.+++.+..++.+ .+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 431 122 57999999999999999999999876543 1233444567899999999988877764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ . .+.||++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-L-AELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-H-HTTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-H-HHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999877999999999975 3 488999999985 899
Q ss_pred EEEcCC
Q 000979 836 IYVGPL 841 (1202)
Q Consensus 836 ~~~G~~ 841 (1202)
++.|+.
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 999874
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.8e-43 Score=384.98 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=185.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 388999999883 3468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 000979 683 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPL-R 744 (1202)
Q Consensus 683 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~ 744 (1202)
.. ...++.+|||+|++.+++.+||+||+.++. ..+ ....++.+++++++++.+++.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123567999999999999999999999864 322 22344455678999999999887 7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000979 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 824 (1202)
Q Consensus 745 ~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 824 (1202)
++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||
T Consensus 148 ~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 7653 579999999999999999999999999999999999999999999999877999999999986 5678999
Q ss_pred eEEEEecCCEEEEEcCC
Q 000979 825 ELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 825 ~v~~l~~gG~~~~~G~~ 841 (1202)
|+++|++ |+++..|++
T Consensus 222 ~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEEET-TEEEEEECH
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999985 899999986
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=7.2e-43 Score=398.02 Aligned_cols=218 Identities=24% Similarity=0.363 Sum_probs=189.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|+ +++++|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+
T Consensus 13 ~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 4589999998872 12347999999999999999999999999999999999877 458999999988
Q ss_pred CCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 682 KKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 682 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
+.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHH
Confidence 643 234677999999999999999999999987543 2344556677999999999998888764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g 228 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999986 67889999999985 8999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
++++
T Consensus 229 ~~~~ 232 (355)
T 1z47_A 229 TPEE 232 (355)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8753
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-42 Score=380.52 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=185.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||||+|+|... +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 488999999883 3468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+|||+|++.+++.+||+||+.+...... ...++.+++++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998764431 233344566889999999998877764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++..+||++++|.+ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999985 46678999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 230 ~~ 231 (256)
T 1vpl_A 230 VE 231 (256)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.4e-43 Score=385.48 Aligned_cols=218 Identities=25% Similarity=0.283 Sum_probs=185.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 488999999883 2468999999999999999999999999999999999876 4489999999886
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHc-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccc
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSP---------EVDSETRKMFIDEVMELVELNPLRQSLV 748 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 748 (1202)
... ..++.++||+|++.+++.+||+||+.++... .... ....++.+++++++++.+|+.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345799999999999999999999986532 1110 0122334566889999999988877764
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.|||+++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999877999999999997 57789999999
Q ss_pred EecCCEEEEEcCCC
Q 000979 829 MKRGGQEIYVGPLG 842 (1202)
Q Consensus 829 l~~gG~~~~~G~~~ 842 (1202)
|++ |++++.|+++
T Consensus 226 l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 226 MFN-GQIIAEGRGE 238 (257)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEeCHH
Confidence 985 8999999874
No 18
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.9e-43 Score=441.79 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=155.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|+. .++++|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.
T Consensus 671 mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--
T ss_pred eEEEEeeEEEeCC-----------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc--
Confidence 3789999988741 12457999999999999999999999999999999999876 34899999863
Q ss_pred CcccccceEEEeecCCCC----CCCCCHHHHHHHHHHcc------------CC---------------------------
Q 000979 683 KQETFARISGYCEQNDIH----SPFVTIYESLLFSAWLR------------LS--------------------------- 719 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~----~~~lTv~e~l~~~~~~~------------~~--------------------------- 719 (1202)
..++|++|++.+ ....|++|++.+..... ..
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136788886421 12357777765421100 00
Q ss_pred -------------------------CCCC----------------------------------HHHHHHHHHHHHHHcCC
Q 000979 720 -------------------------PEVD----------------------------------SETRKMFIDEVMELVEL 740 (1202)
Q Consensus 720 -------------------------~~~~----------------------------------~~~~~~~~~~~l~~l~l 740 (1202)
...+ ....+++++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 0000 00012457889999999
Q ss_pred Ccc--ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Q 000979 741 NPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 818 (1202)
Q Consensus 741 ~~~--~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 818 (1202)
.+. .+.. +++|||||||||+|||+|+.+|+||+|||||+|||+.+...+.+.|+++ |.|||++||+++ .
T Consensus 890 ~~~~~~~~~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSC-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CchhhcCCC-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-H
Confidence 752 3444 3579999999999999999999999999999999999999999988754 679999999975 4
Q ss_pred HHHhcceEEEEecCCEEEEEcC
Q 000979 819 IFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 819 ~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
+.+.||++++|.+ |+++..|+
T Consensus 961 v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCBT-TBCCC---
T ss_pred HHHhCCEEEEEEC-CEEEEeCC
Confidence 6678999999985 78887775
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.7e-43 Score=398.49 Aligned_cols=215 Identities=24% Similarity=0.346 Sum_probs=187.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 78899999883 3568999999999999999999999999999999999877 45899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999875432 2233444567899999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999755 999999999986 67889999999985 899999997
Q ss_pred Cc
Q 000979 842 GR 843 (1202)
Q Consensus 842 ~~ 843 (1202)
++
T Consensus 219 ~~ 220 (359)
T 2yyz_A 219 DE 220 (359)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-42 Score=398.20 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=188.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++++|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 78899998872 3468999999999999999999999999999999999877 45899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.+..++.. ++|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999987543 2344555677899999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999999755 999999999986 67889999999985 899999997
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 219 ~ 219 (362)
T 2it1_A 219 D 219 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.2e-42 Score=398.17 Aligned_cols=214 Identities=26% Similarity=0.343 Sum_probs=188.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++++|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 78899999883 3568999999999999999999999999999999999877 45899999998753
Q ss_pred c-------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
. ...++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.+..++.. ++|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 123567999999999999999999999987554 2344555677899999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999999755 999999999986 67889999999985 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..|++.
T Consensus 219 ~~~g~~~ 225 (372)
T 1g29_1 219 QQVGSPD 225 (372)
T ss_dssp EEEECHH
T ss_pred EEeCCHH
Confidence 9999974
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.8e-42 Score=397.80 Aligned_cols=216 Identities=22% Similarity=0.348 Sum_probs=182.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 388999999883 3468999999999999999999999999999999999877 4589999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++||||||
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~ 147 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 147 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999875332 2345556677999999999998887763 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|+
T Consensus 148 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 225 (372)
T 1v43_A 148 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 225 (372)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999765 999999999986 67889999999985 89999999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+.+
T Consensus 226 ~~~ 228 (372)
T 1v43_A 226 PTE 228 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.5e-42 Score=383.67 Aligned_cols=214 Identities=24% Similarity=0.322 Sum_probs=184.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+||||++++||+++|+||||||||||+|+|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 588999999883 35699999999999999999999999999999999998763 479999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. ...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+++.+..++.+ ++||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 234567899999999888899999999875432 11223456889999999998877764 479999
Q ss_pred HHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 760 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 760 qrqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
|||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+.++|||+++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57789999999985
Q ss_pred CEEEEEcCCCc
Q 000979 833 GQEIYVGPLGR 843 (1202)
Q Consensus 833 G~~~~~G~~~~ 843 (1202)
|++++.|++++
T Consensus 224 G~i~~~g~~~~ 234 (266)
T 4g1u_C 224 GKLVACGTPEE 234 (266)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEEcCHHH
Confidence 89999999754
No 24
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.6e-42 Score=429.70 Aligned_cols=196 Identities=27% Similarity=0.326 Sum_probs=141.8
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC---------------CCC--Cc--eEEEEEEEcCccCCcccc----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---------------RKT--GG--YITGNITISGYPKKQETF---- 687 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g---------------~~~--~~--~~~G~i~~~g~~~~~~~~---- 687 (1202)
+|+|||++|++||++||+||||||||||+++|.+ ... .+ ...|.+.+++.+......
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~ 416 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 416 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchh
Confidence 5999999999999999999999999999987641 000 00 123567777765431100
Q ss_pred ----------------------------------------cceEEEeecCCCCCC-------------------------
Q 000979 688 ----------------------------------------ARISGYCEQNDIHSP------------------------- 702 (1202)
Q Consensus 688 ----------------------------------------~~~~~~v~q~~~~~~------------------------- 702 (1202)
.+..|++.|+..++|
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (670)
T 3ux8_A 417 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 496 (670)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTT
T ss_pred hhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecC
Confidence 001133333322221
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 703 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 703 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
.+||+||+.+... . . ..++..+.++.+++... .+.. +..|||||||||+|||||+.+|
T Consensus 497 ~~~~~~~~ltv~e~l~~~~~------~-~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 497 KNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BCHHHHHTSBHHHHHHHTTT------C-H--HHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHhhCCHHHHHHHHHH------h-h--hHHHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHHhhCC
Confidence 4799999987431 1 1 12335677888888642 3443 3579999999999999999987
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 775 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 775 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
+||||||||+|||+.++..+++.|++++++|+|||++|||++ ..+.|||+++|. ++|++++.|+++
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 599999999999999999999999999888999999999975 457899999993 368999999973
No 25
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-42 Score=397.42 Aligned_cols=215 Identities=27% Similarity=0.369 Sum_probs=187.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceE--EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
++++|++++|. +++ +|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 78899999883 123 8999999999999999999999999999999999877 458999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 682 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 682 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
+.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 632 234678999999999999999999999976433 2344555677899999999998888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999754 999999999986 67889999999985 89
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
++..|++++
T Consensus 219 i~~~g~~~~ 227 (353)
T 1oxx_K 219 LVQVGKPED 227 (353)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 999998753
No 26
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-42 Score=375.27 Aligned_cols=214 Identities=22% Similarity=0.324 Sum_probs=181.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 488999999883 2468999999999999999999999999999999999876 4589999999886
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCC
Q 000979 683 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LS 757 (1202)
... . .++.++||+|++.+++.+||+||+.++.... ...++.++.++++++.++ +.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 432 1 2345999999999999999999998864211 112233456788999994 87766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.|||+++|++ |+++.
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999975 57789999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 99864
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.3e-42 Score=391.68 Aligned_cols=210 Identities=21% Similarity=0.285 Sum_probs=183.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++ +|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 57889998872 24 8999999999999999999999999999999999877 45899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.++|.+||+||+.|+...+.. ..+ ++++++++.++|.+..++.. ++|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 23456799999999999999999999998754321 111 45889999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.+ .|.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999965 4999999999985 67889999999985 899999987
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.6e-41 Score=370.45 Aligned_cols=219 Identities=26% Similarity=0.273 Sum_probs=176.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|. ++.+|+||||++++||+++|+||||||||||+|+|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78999999883 24689999999999999999999999999999999997211267999999998864
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCCCCCC-CC
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLVGLPGVSG-LS 757 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~~~~~~-LS 757 (1202)
.. . .++.++|++|++.+++.+||+||+.+............++.+++++++++.+++ .+..++.+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 1 134589999999999999999999886532111112233345668899999999 47777653 46 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998767999999999986 45556 599999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
+.|+++
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 999863
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.6e-41 Score=378.81 Aligned_cols=246 Identities=23% Similarity=0.296 Sum_probs=186.9
Q ss_pred CccccccccchhhhhhhhhccCCCC-CCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEE
Q 000979 568 DDIRGQQSSSQSLSLAEAEASRPKK-KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA 646 (1202)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 646 (1202)
+..++..+..++++..+........ .....+.....++++||+|+|+ +++.+|+||||+|++||++|
T Consensus 17 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~va 84 (306)
T 3nh6_A 17 RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLA 84 (306)
T ss_dssp --CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEE
T ss_pred hHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEE
Confidence 3333444555565555433222111 1111222345799999999984 23468999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 000979 647 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 723 (1202)
Q Consensus 647 l~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 723 (1202)
|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++||+|++.+++ .||+||+.++.. ...
T Consensus 85 ivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~ 156 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAG 156 (306)
T ss_dssp EESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCC
T ss_pred EECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCC
Confidence 999999999999999999877 458999999998754 345678999999998885 699999988632 122
Q ss_pred HHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 000979 724 SETRKMFIDEVMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796 (1202)
Q Consensus 724 ~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~ 796 (1202)
.+ .++++++.+++.+ -.++.++.. ...|||||||||+|||||+.+|+||||||||||||+.++..+++
T Consensus 157 ~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 157 ND----EVEAAAQAAGIHDAIMAFPEGYRTQVGER-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp HH----HHHHHHHHHTCHHHHHHSTTGGGCEESTT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred HH----HHHHHHHHhCcHHHHHhccchhhhHhcCC-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 22 2445555555543 234555544 35799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 797 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 797 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
.|+++. +++|+|++||+++ .+ ..||+|++|++ |+++..|+++
T Consensus 232 ~l~~l~-~~~Tvi~itH~l~-~~-~~aD~i~vl~~-G~iv~~G~~~ 273 (306)
T 3nh6_A 232 SLAKVC-ANRTTIVVAHRLS-TV-VNADQILVIKD-GCIVERGRHE 273 (306)
T ss_dssp HHHHHH-TTSEEEEECCSHH-HH-HTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHc-CCCEEEEEEcChH-HH-HcCCEEEEEEC-CEEEEECCHH
Confidence 999985 4799999999986 34 55999999985 8999999974
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-41 Score=374.02 Aligned_cols=217 Identities=22% Similarity=0.326 Sum_probs=180.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|.... ...+.+|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 68899999884100 001568999999999999999999999999999999999876 45899999998765
Q ss_pred cccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCCHHH
Q 000979 684 QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~LSgGq 760 (1202)
....++.+|||+|++ ..++.+||+||+.++..... ..++.+++++++++.+|+. +..++.+ +.|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 334466799999995 46677999999998643211 1111234578999999998 7777654 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999767999999999997 46678999999985 89999997
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 5
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3e-41 Score=367.39 Aligned_cols=208 Identities=20% Similarity=0.303 Sum_probs=178.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. + +|+||||++++ |+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 57889999883 1 39999999999 9999999999999999999999876 44899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+++.+..++.+ .+|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567999999999999999999998864221 11222566889999999988777764 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999754 999999999985 57789999999985 899999986
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.6e-40 Score=368.28 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=181.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||+|+|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 589999999883 2468999999999999999999999999999999999842236789999999876
Q ss_pred Ccc---cc-cceEEEeecCCCCCCCCCHHHHHHHHHH-cc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAW-LR---LSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
... .. ++.++||+|++.+++.+||.||+.+... .+ .....+.++.+++++++++.+++. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 3358999999999999999999987541 11 111223444456788999999996 45565431
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 832 (1202)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|.+
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 34454 899999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 8999999974
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.2e-41 Score=376.54 Aligned_cols=220 Identities=22% Similarity=0.349 Sum_probs=180.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|. ++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 3589999999883 2468999999999999999999999999999999999876 448999999987
Q ss_pred CC--c---ccccceEEEeecCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 682 KK--Q---ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 682 ~~--~---~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+. . ...++.++||+|++.+. +.+||+||+.++...... .....++.+++++++++.+++.+..++.+
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 159 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI----- 159 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----
Confidence 64 2 23456799999987543 356999999875321000 01112233456889999999988777764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCCHHHHHhcceEEEEec
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||+++ ++.+.||++++|++
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD 238 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 4799999999999999999999999999999999999999999999997669999 99999986 46788999999985
Q ss_pred CCEEEEEcCCCc
Q 000979 832 GGQEIYVGPLGR 843 (1202)
Q Consensus 832 gG~~~~~G~~~~ 843 (1202)
|++++.|++++
T Consensus 239 -G~i~~~g~~~~ 249 (279)
T 2ihy_A 239 -GQSIQQGAVED 249 (279)
T ss_dssp -TEEEEEEEHHH
T ss_pred -CEEEEECCHHH
Confidence 89999998753
No 34
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.3e-40 Score=414.04 Aligned_cols=197 Identities=26% Similarity=0.387 Sum_probs=146.1
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHH---------HHHhCCCC-C---ceEEE------EEEEcCccCCccc-----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-G---GYITG------NITISGYPKKQET----- 686 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl---------~~l~g~~~-~---~~~~G------~i~~~g~~~~~~~----- 686 (1202)
.|+|||++|++||+++|+||||||||||+ +.+.+... . ....| .+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 48999999999999999999999999997 44444211 1 12233 3455544321100
Q ss_pred ---------------------------------------ccceEEEeecCCCCCC-------------------------
Q 000979 687 ---------------------------------------FARISGYCEQNDIHSP------------------------- 702 (1202)
Q Consensus 687 ---------------------------------------~~~~~~~v~q~~~~~~------------------------- 702 (1202)
..+..|++.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665554
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 000979 703 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 774 (1202)
Q Consensus 703 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p- 774 (1202)
.+||.|++.|... . ....++.++++.+||.... .+.+ ...|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3688888887431 1 1223467889999996432 1222 3579999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 775 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 775 --~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
+||||||||+|||+.++..+++.|++++++|.|||+++|+++ ....+|++++|. ++|++++.|+++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 799999999999999999999999999888999999999974 456799999993 479999999974
No 35
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.6e-40 Score=360.66 Aligned_cols=209 Identities=22% Similarity=0.336 Sum_probs=175.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.
T Consensus 4 ~l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred eEEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 378999999883 02458999999999999999999999999999999999876 3489987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.++.++||+|++.+++.+||+||+.++...... ......+.+++++++++.+++.+..++.+ ..||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 245689999999999899999999986432111 00112233456889999999988777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999776 999999999986 46789999999985 78 89898
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+++
T Consensus 212 ~~~ 214 (253)
T 2nq2_C 212 TRN 214 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 36
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1e-39 Score=406.67 Aligned_cols=195 Identities=29% Similarity=0.371 Sum_probs=148.2
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh-C----C-----CCCc---eEEE------EEEEcCccCCccc-----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------NITISGYPKKQET----- 686 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~-g----~-----~~~~---~~~G------~i~~~g~~~~~~~----- 686 (1202)
.|+|||++|++||+++|+|+||||||||+++|. | . ..++ ...| .|.+++.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 499999999999999999999999999999863 2 1 1222 2344 5888887753110
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 000979 687 -----------------FARISGYCEQNDIHS----------------------P------------------------- 702 (1202)
Q Consensus 687 -----------------~~~~~~~v~q~~~~~----------------------~------------------------- 702 (1202)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 012346666642211 1
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 703 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 703 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
.+||.|++.|... . .. ..++.++++.+||.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3688888876321 1 11 123568899999976 44544 3579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCC
Q 000979 775 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 841 (1202)
Q Consensus 775 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~ 841 (1202)
+||||||||+|||+.++..+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 457899999994 36899999986
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-40 Score=354.80 Aligned_cols=202 Identities=20% Similarity=0.272 Sum_probs=171.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|. + ++|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+
T Consensus 9 ~~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 72 (214)
T 1sgw_A 9 SKLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP 72 (214)
T ss_dssp CEEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 3588999998872 2 58999999999999999999999999999999999876 448999999987
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ..++.++||+|++.+++.+||+||+.++...+.. ... +++++++++.+++.+. ++. +..||||||
T Consensus 73 ~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqk 139 (214)
T 1sgw_A 73 IT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKK-----LGELSQGTI 139 (214)
T ss_dssp GG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHH
T ss_pred hh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHH
Confidence 65 3567799999999999999999999987654321 111 3447889999999876 554 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++++ |++
T Consensus 140 qrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~--~~~ 210 (214)
T 1sgw_A 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS--TKI 210 (214)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB--C--
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC--Ccc
Confidence 9999999999999999999999999999999999999999766899999999997 5677788888664 454
No 38
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.1e-40 Score=360.08 Aligned_cols=205 Identities=21% Similarity=0.348 Sum_probs=176.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++ ++|+|+||++++||+++|+||||||||||+|+|+|..+ +. |+|.++|.+..
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 678888764 26999999999999999999999999999999999876 56 99999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ..+++.++|++|++.+++.+||+||+.++.. . ... +++++++++.+++.+..++.. ..|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 2 2345679999999999999999999987521 1 111 345789999999988777653 5799999
Q ss_pred HHHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 761 RKRLTIAVELVANPS-------IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~-------illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
|||++|||||+.+|+ +|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G 209 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-G 209 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-T
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 999999999999999 99999999999999999999999999777999999999986 46689999999985 8
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
++++.|++++
T Consensus 210 ~i~~~g~~~~ 219 (249)
T 2qi9_C 210 KMLASGRREE 219 (249)
T ss_dssp EEEEEEEHHH
T ss_pred EEEEeCCHHH
Confidence 9999998643
No 39
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.1e-40 Score=359.37 Aligned_cols=212 Identities=27% Similarity=0.433 Sum_probs=174.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+++|+ .+++.+|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3588999999873 013468999999999999999999999999999999999876 448999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~ 751 (1202)
+.. ..+++.++||+|++.+++ .||+||+.++. ..... +.++++++.+++.+..++. .+.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~- 141 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGE- 141 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC-----TTCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCST-
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC-----CCCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhC-
Confidence 643 234567999999998886 69999998752 11121 2356777888876654432 222
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.||++++|.+
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEK 218 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC
Confidence 245799999999999999999999999999999999999999999999984 6999999999986 33 56999999985
Q ss_pred CCEEEEEcCC
Q 000979 832 GGQEIYVGPL 841 (1202)
Q Consensus 832 gG~~~~~G~~ 841 (1202)
|++++.|++
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999986
No 40
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.4e-40 Score=366.20 Aligned_cols=215 Identities=21% Similarity=0.283 Sum_probs=173.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|... +++.+|+||||++++||+++|+||||||||||||+|+|... +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 58999999987410 12458999999999999999999999999999999999876 4489999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCC-HH----HHHHHHHHHHHHc--CCCccccccccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD-SE----TRKMFIDEVMELV--ELNPLRQSLVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~----~~~~~~~~~l~~l--~l~~~~~~~~~~~~ 752 (1202)
.. ..+++.++||+|++.+++ .||+||+.++... ... .+ ..+..++++++.+ |+.+..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 5999999875321 111 11 1122345667777 666555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||++||+++ ..+.||++++|.+
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 4899999999975 3456999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 232 -G~i~~~g~~~ 241 (271)
T 2ixe_A 232 -GSVCEQGTHL 241 (271)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 8999999863
No 41
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.8e-39 Score=403.05 Aligned_cols=195 Identities=26% Similarity=0.362 Sum_probs=144.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHH-HhCCC-------CC----------------ceEEE-------EEEEcC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV-LAGRK-------TG----------------GYITG-------NITISG 679 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~-l~g~~-------~~----------------~~~~G-------~i~~~g 679 (1202)
.|+|||++|++||+++|+|+||||||||++. |+|.. .+ .+..| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 3999999999999999999999999999996 66421 11 13467 688998
Q ss_pred ccCCcccc-------------c---------ceEEEeec----------------------CCCCCC-------------
Q 000979 680 YPKKQETF-------------A---------RISGYCEQ----------------------NDIHSP------------- 702 (1202)
Q Consensus 680 ~~~~~~~~-------------~---------~~~~~v~q----------------------~~~~~~------------- 702 (1202)
.++..... + +..||.++ +..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 76532110 0 01122211 111111
Q ss_pred -------------------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHH
Q 000979 703 -------------------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 703 -------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrq 762 (1202)
.+|+.|++.|.. . .. ..+++.++++.++|... .+.. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~~--~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-ES--AIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-SH--HHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-ch--HHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 245556554421 1 11 12357899999999763 3443 3579999999
Q ss_pred HHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCE
Q 000979 763 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQ 834 (1202)
Q Consensus 763 Rv~ia~aL~~~---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~ 834 (1202)
||+||++|+.+ |+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ .+ +.||++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999888999999999975 34 8899999994 4689
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
+++.|++
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999986
No 42
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=3.4e-39 Score=403.64 Aligned_cols=196 Identities=27% Similarity=0.349 Sum_probs=145.1
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh-C----CC-----CCce---EEE------EEEEcCccCCccc-----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGGY---ITG------NITISGYPKKQET----- 686 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~-g----~~-----~~~~---~~G------~i~~~g~~~~~~~----- 686 (1202)
+|+|||++|++||+++|+|+||||||||+++|. | .. .++. ..| .+.+++.++....
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 489999999999999999999999999999853 2 11 2221 123 3566665542100
Q ss_pred -----------------ccceEEEeecCCCC----------------------CC-------------------------
Q 000979 687 -----------------FARISGYCEQNDIH----------------------SP------------------------- 702 (1202)
Q Consensus 687 -----------------~~~~~~~v~q~~~~----------------------~~------------------------- 702 (1202)
..+..||++|...+ .+
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 01234566553221 11
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 703 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 703 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
.+||.|++.|... . .. ..++.++++.+||.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 3577888776321 1 11 223568899999976 34443 3579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 775 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 775 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+++
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999975 457899999994 468999999874
No 43
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.7e-40 Score=357.71 Aligned_cols=211 Identities=27% Similarity=0.402 Sum_probs=174.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ +++.+|+||||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 57889998772 12358999999999999999999999999999999999876 34899999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-------cCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-------~~~~~ 753 (1202)
. ..+++.++||+|++.+++ .||+||+.++.. ..... +.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCCH----HHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 235667999999998887 599999987421 11221 23678888889887665432 22 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ ..+.||++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 6999999999975 3456999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 214 ~i~~~g~~~ 222 (243)
T 1mv5_A 214 QITGSGKHN 222 (243)
T ss_dssp EECCCSCHH
T ss_pred EEEEeCCHH
Confidence 999888864
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.5e-39 Score=353.18 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=173.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|... ...+.+|+|+||+++ ||+++|+||||||||||+|+|+|.. +. +|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 6789999988410 012568999999999 9999999999999999999999987 53 899999998764
Q ss_pred cccccceEE-EeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHH
Q 000979 684 QETFARISG-YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~~~~~~~~~-~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqr 761 (1202)
....++.++ |++|++.+ .+||+||+.+...+. ... +++++++++.+++. +..++.. .+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 311256789 99999877 899999999876432 111 23478899999998 7777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc-eEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~v~~l~~gG~~~~~G~ 840 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||+++ .+.+.|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998743 9999999986 4678899 9999985 89999998
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 6
No 45
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.5e-38 Score=351.14 Aligned_cols=212 Identities=24% Similarity=0.367 Sum_probs=171.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|... ..+.+|+||||++++||+++|+||||||||||+|+|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48899999987411 11358999999999999999999999999999999999875 4 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 752 (1202)
.. ..+++.++||+|++.+++ .||+||+.++.. .... +.+.++++.+++.+. .++.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998886 599999987421 1121 234566676666443 23333322
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.||++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999854 8999999999863 3 56999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 229 G~i~~~g~~~ 238 (260)
T 2ghi_A 229 GKIVEKGTHK 238 (260)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999999863
No 46
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-39 Score=370.25 Aligned_cols=214 Identities=20% Similarity=0.271 Sum_probs=177.7
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+++|+. +++.+|+||||+|++||+++|+||||||||||||+|+|... .+|+|.++|.
T Consensus 17 ~~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSC
T ss_pred CCeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCE
Confidence 346999999998841 23568999999999999999999999999999999999864 4799999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------C
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------P 751 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~ 751 (1202)
++.. ..+++.++||+|++.+++ +||+||+.+.. ... +++++++++.++|.+..++.... .
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 8754 234678999999999987 69999996321 112 23477899999998777665321 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
....|||||||||+|||||+.+|++|||||||||||+..+..+++.|+++. .++|+|++||+++ ....+||+++|++
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 123499999999999999999999999999999999999999999998864 5899999999974 4567999999985
Q ss_pred CCEEEEEcCCCc
Q 000979 832 GGQEIYVGPLGR 843 (1202)
Q Consensus 832 gG~~~~~G~~~~ 843 (1202)
|+++..|++.+
T Consensus 229 -G~i~~~g~~~e 239 (390)
T 3gd7_A 229 -NKVRQYDSILE 239 (390)
T ss_dssp -TEEEEESSHHH
T ss_pred -CEEEEECCHHH
Confidence 89999999753
No 47
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.6e-37 Score=383.77 Aligned_cols=215 Identities=23% Similarity=0.307 Sum_probs=178.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+++|+. +++++|+|+|+++++||++||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCE
Confidence 356999999999852 12458999999999999999999999999999999999876 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~ 750 (1202)
++.. ..+++.++||+|++.+++ .||+||+.++.. +..+. ++++++++.+++.+. .|+.+|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 8643 345678999999999887 599999988531 12222 236777777777643 3444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
. ...||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +|+|+|++||+++ ..+.||++++|+
T Consensus 477 ~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~--~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 N-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLS--TIEQADEILVVD 552 (582)
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 4 35799999999999999999999999999999999999999999999985 4999999999985 346799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 553 ~-G~i~~~g~~~ 563 (582)
T 3b5x_A 553 E-GEIIERGRHA 563 (582)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999864
No 48
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-38 Score=392.39 Aligned_cols=213 Identities=25% Similarity=0.404 Sum_probs=173.8
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+ +++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 352 ~~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCE
Confidence 45799999999884 12358999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++.. ..+++.++||+|++.+++ .||+||+.++. +..+++ .++++++..++.+ ..++.+|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN-----PGATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS-----TTCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC-----CCCCHH----HHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8654 345778999999998886 59999998752 112222 1344554444433 23444443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|++||+++. + +.||++++|+
T Consensus 488 ~g-~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~ 563 (598)
T 3qf4_B 488 NG-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLR 563 (598)
T ss_dssp HH-TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEEC
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 32 4699999999999999999999999999999999999999999999985 59999999999973 4 5699999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 564 ~-G~i~~~g~~~ 574 (598)
T 3qf4_B 564 D-GEIVEMGKHD 574 (598)
T ss_dssp S-SSEEECSCHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999874
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.6e-37 Score=384.71 Aligned_cols=219 Identities=27% Similarity=0.358 Sum_probs=180.7
Q ss_pred Cce-eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 601 PHS-LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 601 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
... ++++||+++|+.. .++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 338 ~~~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g 405 (595)
T 2yl4_A 338 FQGALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDG 405 (595)
T ss_dssp CCCCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECC
Confidence 346 9999999998521 12468999999999999999999999999999999999876 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~ 749 (1202)
.++.. ..+++.++||+|++.+++ .||+||+.++.... ...+ +++++++++.+++.+ ..|+.+|
T Consensus 406 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~ 478 (595)
T 2yl4_A 406 HDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVG 478 (595)
T ss_dssp EETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCS
T ss_pred EEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCccccccccc
Confidence 88753 335678999999999887 59999999853210 0122 233677888877653 3466666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++.+ |+|+|++||+++ ..+.|||+++|
T Consensus 479 ~~~-~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l 554 (595)
T 2yl4_A 479 EKG-VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVL 554 (595)
T ss_dssp SSS-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEE
T ss_pred CCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEE
Confidence 543 57999999999999999999999999999999999999999999999865 899999999975 34679999999
Q ss_pred ecCCEEEEEcCCCc
Q 000979 830 KRGGQEIYVGPLGR 843 (1202)
Q Consensus 830 ~~gG~~~~~G~~~~ 843 (1202)
++ |+++..|++++
T Consensus 555 ~~-G~i~~~g~~~~ 567 (595)
T 2yl4_A 555 DQ-GKITEYGKHEE 567 (595)
T ss_dssp ET-TEEEEEECSCC
T ss_pred EC-CEEEEECCHHH
Confidence 85 89999999864
No 50
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=338.98 Aligned_cols=200 Identities=23% Similarity=0.380 Sum_probs=158.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|.. +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 789999998741 12458999999999999999999999999999999999876 6799999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC------cc-ccccccCCCCCCC
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PL-RQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~------~~-~~~~~~~~~~~~L 756 (1202)
.++||+|++.+ +.+||+||+.++... ..+ + .+++++.+++. +. .++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-Y---YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-H---HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-H---HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 28999999864 578999999875321 111 1 12333333332 11 1112222 24679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999873 3 57999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 205 ~i~~~g~~~ 213 (237)
T 2cbz_A 205 KISEMGSYQ 213 (237)
T ss_dssp EEEEEECHH
T ss_pred EEEEeCCHH
Confidence 999999864
No 51
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1e-37 Score=338.22 Aligned_cols=201 Identities=21% Similarity=0.324 Sum_probs=160.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+. +++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 5889999988731 23468999999999999999999999999999999999876 4589999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCC
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~ 755 (1202)
.++|++|++.+++. ||+||+.++.. .... ..++.++.+++.+.. ++.++.+ ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988885 99999987421 1111 123444444443322 2222222 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||+++ ..+.||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999975 3456999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 207 i~~~g~~~ 214 (229)
T 2pze_A 207 SYFYGTFS 214 (229)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99999863
No 52
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.5e-38 Score=385.90 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=176.6
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.+..++++||+|+|+. +++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||
T Consensus 338 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESS
T ss_pred CCCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECC
Confidence 3457999999999852 23458999999999999999999999999999999999877 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 749 (1202)
.++.. ..+++.++||+|++.+++. ||+||+.++. +..+.++ +.+.++..++. +-.|+.++
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC-----SSCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC-----CCCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc
Confidence 98754 3457789999999998864 9999998752 1222222 23344444432 34456666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..+ .+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ....+||+++|
T Consensus 475 ~~~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVL 550 (587)
T ss_dssp SSS-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEE
T ss_pred CCC-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 543 5799999999999999999999999999999999999999999999874 5899999999975 45689999999
Q ss_pred ecCCEEEEEcCCCc
Q 000979 830 KRGGQEIYVGPLGR 843 (1202)
Q Consensus 830 ~~gG~~~~~G~~~~ 843 (1202)
++ |+++..|++++
T Consensus 551 ~~-G~i~~~g~~~e 563 (587)
T 3qf4_A 551 HE-GKVAGFGTHKE 563 (587)
T ss_dssp ET-TEEEEEECHHH
T ss_pred EC-CEEEEECCHHH
Confidence 85 89999999753
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.5e-38 Score=385.50 Aligned_cols=215 Identities=25% Similarity=0.389 Sum_probs=177.0
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.+..++++||+|+|+. +++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 336 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g 402 (578)
T 4a82_A 336 KQGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDG 402 (578)
T ss_dssp CSCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECC
Confidence 3457999999999852 23458999999999999999999999999999999999877 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 749 (1202)
.++.. ..+++.++||+|++.+++. ||+||+.++. +..+.+ .+.+.++..++. +-.|+.+|
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhc
Confidence 98654 3456789999999998875 9999998752 122222 244555555543 33456666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..+ ..||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|++||+++. .+.|||+++|
T Consensus 473 ~~g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l 548 (578)
T 4a82_A 473 ERG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVI 548 (578)
T ss_dssp GGG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEE
T ss_pred cCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEE
Confidence 543 4699999999999999999999999999999999999999999999874 57999999999873 4679999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |+++..|+++
T Consensus 549 ~~-G~i~~~g~~~ 560 (578)
T 4a82_A 549 EN-GHIVETGTHR 560 (578)
T ss_dssp ET-TEEEEEECHH
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
No 54
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.8e-37 Score=383.26 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=178.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+++|+. +++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~ 405 (582)
T 3b60_A 339 TGDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGH 405 (582)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTE
T ss_pred CCcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCE
Confidence 356999999998841 11458999999999999999999999999999999999876 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~ 750 (1202)
++.. ..+++.++||+|++.+++ .||+||+.++.. ...+. ++++++++.+++.+. .|+.+|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCCH----HHHHHHHHHcCCHHHHHhccccccccccC
Confidence 8753 345678999999999887 599999987531 12222 236777777777543 3455555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
. ...||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++.+ |+|+|++||+++. .+.|||+++|+
T Consensus 477 ~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~ 552 (582)
T 3b60_A 477 N-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVE 552 (582)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEE
Confidence 4 357999999999999999999999999999999999999999999999864 9999999999863 46799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 553 ~-G~i~~~g~~~ 563 (582)
T 3b60_A 553 D-GIIVERGTHS 563 (582)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEecCHH
Confidence 5 8999999863
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.8e-36 Score=397.49 Aligned_cols=217 Identities=28% Similarity=0.381 Sum_probs=184.2
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.++.++|+||+|+|+.+ .++++|+|+|+++++||.+||+||||||||||+++|.|..+ +.+|+|.+||
T Consensus 412 ~~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG 479 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDG 479 (1321)
T ss_dssp CCCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCcEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCC
Confidence 34579999999999743 23468999999999999999999999999999999999877 5699999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------Ccccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~ 749 (1202)
.+++. ..+|+.++||+|++.++. .|++|||.|+. +..+.+ ++.++++..++ .+-.||.+|
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITRE----EMVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred ccchhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccchHH----HHHHHHHHccchhHHHcCCCCCccEec
Confidence 98764 456788999999998875 69999999862 223333 24555555543 456788898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..|. .||||||||++|||||++||+||+||||||+||+++++.+.+.|+++. +|+|+|+++|+++ ..+.+|+|++|
T Consensus 550 e~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 550 DRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp SSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEE
T ss_pred CCCC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEe
Confidence 8765 599999999999999999999999999999999999999999999875 5899999999987 46889999999
Q ss_pred ecCCEEEEEcCCCc
Q 000979 830 KRGGQEIYVGPLGR 843 (1202)
Q Consensus 830 ~~gG~~~~~G~~~~ 843 (1202)
+ +|+++..|+.++
T Consensus 626 ~-~G~ive~Gth~e 638 (1321)
T 4f4c_A 626 K-NGQVVEVGDHRA 638 (1321)
T ss_dssp E-TTEEEEEECHHH
T ss_pred e-CCeeeccCCHHH
Confidence 8 589999999643
No 56
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.1e-35 Score=329.54 Aligned_cols=197 Identities=22% Similarity=0.342 Sum_probs=148.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|+++.+ +.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|
T Consensus 39 ~~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-- 99 (290)
T ss_dssp -----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS--
T ss_pred ceEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC--
Confidence 357888888641 247999999999999999999999999999999999876 6799999988
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVS 754 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~ 754 (1202)
.++|++|++.+++. ||+||+. +. . .... .+++.++.+++.+.. ++..+.. ..
T Consensus 100 --------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~ 158 (290)
T 2bbs_A 100 --------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GI 158 (290)
T ss_dssp --------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----C
T ss_pred --------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcCc-cC
Confidence 37999999988875 9999997 32 1 1111 133445555554322 2222222 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |
T Consensus 159 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G 234 (290)
T 2bbs_A 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-G 234 (290)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-T
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999974 4553 5899999999975 3457999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 235 ~i~~~g~~~ 243 (290)
T 2bbs_A 235 SSYFYGTFS 243 (290)
T ss_dssp EEEEEECHH
T ss_pred eEEEeCCHH
Confidence 999999874
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1e-35 Score=395.93 Aligned_cols=217 Identities=27% Similarity=0.399 Sum_probs=177.4
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
..+.++++||+|+|+.+ .+.++|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 384 ~~g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g 451 (1284)
T 3g5u_A 384 IQGNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDG 451 (1284)
T ss_dssp CCCCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC
Confidence 34679999999999632 22458999999999999999999999999999999999877 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~ 749 (1202)
.++.. ..+|+.+|||+|++.+++. ||+||+.++.. ..+.++ +++.++..+ +.+..|+.+|
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~ 521 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDE----IEKAVKEANAYDFIMKLPHQFDTLVG 521 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhcccccccccc
Confidence 88654 3456789999999998875 99999998731 223332 233333332 3344567777
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
..+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +|+|+|+++|+++ ....+|++++|
T Consensus 522 ~~g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl 597 (1284)
T 3g5u_A 522 ERG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGF 597 (1284)
T ss_dssp SSS-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEEC
T ss_pred CCC-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEE
Confidence 654 4699999999999999999999999999999999999999999998864 5999999999975 34669999999
Q ss_pred ecCCEEEEEcCCCc
Q 000979 830 KRGGQEIYVGPLGR 843 (1202)
Q Consensus 830 ~~gG~~~~~G~~~~ 843 (1202)
+ +|++++.|+.++
T Consensus 598 ~-~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 598 D-GGVIVEQGNHDE 610 (1284)
T ss_dssp S-SSCCCCEECHHH
T ss_pred E-CCEEEEECCHHH
Confidence 8 489999999743
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=1.3e-29 Score=319.29 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=158.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..+...|++++|. ++.+|+|+||++++||+++|+||||||||||||+|+| |.+ +|.+
T Consensus 434 ~~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~ 490 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFP 490 (986)
T ss_dssp CEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCC
T ss_pred ceeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCc
Confidence 4577778888773 3568999999999999999999999999999999995 111 3433
Q ss_pred CCcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000979 682 KKQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 759 (1202)
... ...++|++|+. .+++.+||.|++.+ ... .. +++++++++.+|+. +..++.+ ..||||
T Consensus 491 ~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGG 552 (986)
T 2iw3_A 491 TQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGG 552 (986)
T ss_dssp CTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHH
T ss_pred ccc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHH
Confidence 211 12368999874 67788999999975 111 11 34578999999995 5566654 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~ 838 (1202)
||||++|||+|+.+|+||||||||+|||+.++..+.+.|++ .|.|||++||+++ .+.+.||++++|.+ |+++ +.
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~ 627 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYK 627 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCC
Confidence 99999999999999999999999999999999999999987 5899999999975 57789999999985 7886 78
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+++
T Consensus 628 G~~~ 631 (986)
T 2iw3_A 628 GNFT 631 (986)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9863
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=4e-31 Score=323.96 Aligned_cols=180 Identities=23% Similarity=0.250 Sum_probs=144.6
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE---------EEcCccCCcc-----cccceEEEee
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI---------TISGYPKKQE-----TFARISGYCE 695 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~ 695 (1202)
.+|+|+| ++++||+++|+||||||||||||+|+|...+ .+|++ .++|.+.... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4799999 9999999999999999999999999997653 24553 3455443210 1123467888
Q ss_pred cCCCCCC---CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000979 696 QNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 772 (1202)
Q Consensus 696 q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~ 772 (1202)
|.....+ ..||+|++... .. +++++++++.+||.+..++.+ .+|||||||||+|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~-----~~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDREL-----HQLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBG-----GGCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 8643322 23999998631 11 123678999999998888764 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+|++|||||||+|||+.++..+.+.|++++++|.|||++|||++ .+..++||+++|.
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~ 302 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY 302 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence 99999999999999999999999999999877999999999976 5678899999997
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=4.9e-31 Score=320.31 Aligned_cols=192 Identities=22% Similarity=0.263 Sum_probs=151.2
Q ss_pred eeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE---------EE
Q 000979 607 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI---------TI 677 (1202)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i---------~~ 677 (1202)
+|++++|. +...+|+|+| ++++||+++|+||||||||||+|+|+|...+ .+|++ .+
T Consensus 25 ~~ls~~yg------------~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 25 EDCVHRYG------------VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAF 89 (538)
T ss_dssp CCEEEECS------------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHT
T ss_pred cCcEEEEC------------CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhh
Confidence 57888773 1124799999 9999999999999999999999999997653 24553 24
Q ss_pred cCccCCc-----ccccceEEEeecCCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 000979 678 SGYPKKQ-----ETFARISGYCEQNDIHSPF---VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 749 (1202)
Q Consensus 678 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 749 (1202)
+|.+... ...+..+++++|+....+. .|+.|++.... . +++++++++.+|+.+..++.+
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------~------~~~~~~~l~~lgl~~~~~~~~- 156 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------E------TGKLEEVVKALELENVLEREI- 156 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------S------SSCHHHHHHHTTCTTTTTSBG-
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------H------HHHHHHHHHHcCCChhhhCCh-
Confidence 5544321 0112346888887544332 38999875310 0 123678999999988777764
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
.+|||||||||+||+||+.+|+||||||||++||+.++..+.+.|++++++|.|||++||++. .+...|||+++|
T Consensus 157 ----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp ----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999878999999999976 577889999999
Q ss_pred ec
Q 000979 830 KR 831 (1202)
Q Consensus 830 ~~ 831 (1202)
.+
T Consensus 232 ~~ 233 (538)
T 1yqt_A 232 YG 233 (538)
T ss_dssp EE
T ss_pred cC
Confidence 73
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=2.1e-30 Score=325.69 Aligned_cols=206 Identities=21% Similarity=0.285 Sum_probs=134.8
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhCCCCCc--eE---EEEEEEcCccC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--YI---TGNITISGYPK 682 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl---------------------~~l~g~~~~~--~~---~G~i~~~g~~~ 682 (1202)
+++|+||||+|++||+++|+||||||||||+ +++.|...++ .+ .+.+.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3479999999999999999999999999998 6776654322 22 35677777654
Q ss_pred CcccccceEEEeecCCC-------------------CCCCCCHHHHHHHHHHccCCCCCCHHHHH------HHHHHHHHH
Q 000979 683 KQETFARISGYCEQNDI-------------------HSPFVTIYESLLFSAWLRLSPEVDSETRK------MFIDEVMEL 737 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 737 (1202)
.. ..++.+++|+|... .++.+||+||+.+...+..... .....+ ....++++.
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 32 12333455555432 2456899999987533221110 000000 011245788
Q ss_pred cCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000979 738 VELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 814 (1202)
Q Consensus 738 l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 814 (1202)
+||.+. .++.+ ..|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 898764 45543 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CCHHHHHhcceEEEEe-----cCCEEEEEcCCCc
Q 000979 815 PSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 843 (1202)
Q Consensus 815 ~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 843 (1202)
++ ....||++++|. ++|++++.|++++
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 75 456799999992 3589999999754
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-28 Score=301.54 Aligned_cols=188 Identities=21% Similarity=0.319 Sum_probs=138.6
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE-----------EcCccCCc---ccccce--EEE
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQ---ETFARI--SGY 693 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~---~~~~~~--~~~ 693 (1202)
..|++++ .+++||+++|+||||||||||||+|+|...+ .+|+|. +.|.+... ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3577777 6899999999999999999999999997663 356552 22221110 000011 122
Q ss_pred eecCCCC------CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH
Q 000979 694 CEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 767 (1202)
Q Consensus 694 v~q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia 767 (1202)
.+|.... -+..++.+++.... .. .+++++++++.+++.+..++.+ ..|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHH
Confidence 3332111 12235666554310 11 1234789999999998888764 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 768 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 768 ~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ++..++||+++|. ||..+|
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~-~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIY-GVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEE-SCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcccc
Confidence 9999999999999999999999999999999999888999999999986 6788999999997 455444
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=2.1e-28 Score=296.04 Aligned_cols=172 Identities=23% Similarity=0.271 Sum_probs=132.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE-----------EEcCccCCc---c------cccceEEEeecC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-----------TISGYPKKQ---E------TFARISGYCEQN 697 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~---~------~~~~~~~~v~q~ 697 (1202)
..++||++||+||||||||||+|+|+|...+ .+|++ .++|.++.. . .......|+.|.
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4579999999999999999999999997653 35666 455654321 0 011112233333
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000979 698 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 777 (1202)
Q Consensus 698 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~il 777 (1202)
+.++ ..|++|++.... . +++++++++.+++.+..++.+ +.|||||||||+|||||+.+|+||
T Consensus 99 ~~~~-~~~v~~~l~~~~------~------~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFL-KGTVNEILTKID------E------RGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTC-CSBHHHHHHHHC------C------SSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhc-cCcHHHHhhcch------h------HHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3332 348888664210 0 123578899999998888764 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 778 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 778 llDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+|||||++||+.++..+.+.|+++++ |+|||+++|+++ ++...||++++|..
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYG 212 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecC
Confidence 99999999999999999999999965 999999999986 67889999999973
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.6e-28 Score=285.85 Aligned_cols=196 Identities=14% Similarity=0.061 Sum_probs=148.4
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEE-E-EEEcCccCCcccccceEEEeecCCC---CCCCCCHH
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTIY 707 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~v~q~~~---~~~~lTv~ 707 (1202)
.++|+++++||+++|+||||||||||+|+|+|... +.+| + |.++|. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999876 3478 8 999982 2466899999874 44567999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 781 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a--L~~~p~i----lllDE 781 (1202)
||+ |+....... .. +++++++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321111 00 112456677788876654 24799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC--H---HHHHhcce-----EEEEecCCEEEEEcCCCcc----ch
Q 000979 782 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPLGRH----SC 846 (1202)
Q Consensus 782 -PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----v~~l~~gG~~~~~G~~~~~----~~ 846 (1202)
||++||+. ...+.+.+++ .|+|+|+++|+.+ . .+.+++|+ +++|.++|+++ .|++++. ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 5555555543 3789999999987 2 34578999 99998347788 8886432 12
Q ss_pred hHHHHHhh
Q 000979 847 HLISYFEA 854 (1202)
Q Consensus 847 ~~~~~f~~ 854 (1202)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 34567643
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=1.7e-24 Score=257.77 Aligned_cols=203 Identities=17% Similarity=0.141 Sum_probs=141.0
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC------------------------------------ceEEEE
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITGN 674 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~------------------------------------~~~~G~ 674 (1202)
+++++|+++.+| +++|+|||||||||||++|++...+ ....|.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 589999999999 9999999999999999999653211 011578
Q ss_pred EEEcCccCCccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHccC-----------------------CCCC----C
Q 000979 675 ITISGYPKKQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----------------------SPEV----D 723 (1202)
Q Consensus 675 i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----------------------~~~~----~ 723 (1202)
+.+||.+.+... .+..+++++|++.++.. +..+...|.-.... .... .
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 999998875421 22347999998766542 45444443211100 0000 0
Q ss_pred ------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC----
Q 000979 724 ------------------------------SETRKMFIDEVMELVELNPLR----------------QS---LVGL---- 750 (1202)
Q Consensus 724 ------------------------------~~~~~~~~~~~l~~l~l~~~~----------------~~---~~~~---- 750 (1202)
.+.....+++.++.+++.+.. +. ....
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000112344555556554310 00 0100
Q ss_pred --CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 751 --PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 751 --~~~~~-LSgGqrqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++ ++.+.||+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~ 364 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHH 364 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCe
Confidence 01112 6999999999999999999 9999999999999999999999999997 689999999997 46788999
Q ss_pred EEEE----ecCCEEEEEc
Q 000979 826 LFLM----KRGGQEIYVG 839 (1202)
Q Consensus 826 v~~l----~~gG~~~~~G 839 (1202)
+++| . +|+++...
T Consensus 365 i~~l~k~~~-~G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVE-DGRTVSHV 381 (415)
T ss_dssp EEEEEEEEE-TTEEEEEE
T ss_pred EEEEEEecc-CCceEEEE
Confidence 9999 6 47776554
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=1.9e-25 Score=237.29 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=98.5
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+++.+|+|| ++||+++|+||||||||||+++|+|. .+ .+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 445689996 89999999999999999999999998 52 2444421100111123456789999975
Q ss_pred HHHH-HHHH----HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 707 YESL-LFSA----WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 707 ~e~l-~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
+||+ .+.. .+.. ... ++.++++++. + | |||||++|||||+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4555 2211 1110 001 1124455543 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
||+| ++..+.+.|+++ ++|+||| +|||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888999999988 6689999 999975
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=4.2e-22 Score=230.93 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 753 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+..||||||||++||+||+ .+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999974 47889999
Q ss_pred EEEecCCEEEE
Q 000979 827 FLMKRGGQEIY 837 (1202)
Q Consensus 827 ~~l~~gG~~~~ 837 (1202)
++|.+ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 78764
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=1.5e-23 Score=216.87 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=100.2
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCC-CCCHHHHHHH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLF 712 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~ 712 (1202)
||||++++||+++|+||||||||||++++.+... . +++ .. ..|+++|++.... ..++.+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISS-----DF---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEH-----HH---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ecc-----HH---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999754211 1 111 01 1256677642110 0111121111
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 000979 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 789 (1202)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~--- 789 (1202)
.... ....+.....+.. ...|||||||++|||+|+.+|++|+|||||++||+.
T Consensus 65 -----------------~~~~-~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IVSK-RLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HHHH-HHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HHHH-HHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111 2223444333332 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 790 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 790 -------------~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
....+.+.|++++++|.|+|++||+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558899999888777999999999964
No 69
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.87 E-value=1.4e-22 Score=230.47 Aligned_cols=119 Identities=23% Similarity=0.284 Sum_probs=105.6
Q ss_pred hhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
...+++.+++++++|+.+||.+.+|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++++.|++
T Consensus 134 ~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 34456677789999999999998888875 7999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+.++.++|||+++|.. ..+.+.+|+|++|++|++++.|+++++.
T Consensus 209 l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 209 INRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 8766688888776643 3566789999999999999999999886
No 70
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=2.4e-22 Score=225.11 Aligned_cols=112 Identities=28% Similarity=0.342 Sum_probs=96.5
Q ss_pred HHHHHHHHhCCc-------ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 46 ITDYYLKVLGLD-------VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 46 ~v~~il~~lgL~-------~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++..++..+|. +..||.+| +.+.+|||||||||+|||||+++|+||+|||||||||+.++..|++.|+++.
T Consensus 159 ~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 159 EVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 345566665554 47899998 6778899999999999999999999999999999999999999999999875
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++|+|++| |+.+++..+|+|+||++|+++++|+|+++++
T Consensus 238 -~~~Tvi~it---H~l~~~~~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 238 -ANRTTIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp -TTSEEEEEC---CSHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCCEEEEEE---cChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 344555555 7788888999999999999999999999985
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=6e-22 Score=226.59 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE--
Q 000979 753 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 826 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v-- 826 (1202)
+..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|+++. +|.|+|++||+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 5889999999999999999999999999984 5899999999964 67889987
Q ss_pred EEEecCCEEEEEcCCC
Q 000979 827 FLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~~ 842 (1202)
++|.+|...+.....+
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 7888776777766654
No 72
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=7.9e-22 Score=218.23 Aligned_cols=118 Identities=25% Similarity=0.276 Sum_probs=104.6
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
..++.+++++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++.
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 345667788999999999998888775 799999999999999999999999999999999999999999999986
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|||++.|... .+.+.+|+|++|++|++++.|+++++..
T Consensus 191 ~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 191 KELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred hhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 345888888877655 5667899999999999999999998864
No 73
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.84 E-value=2.5e-21 Score=220.37 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=104.7
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.++++.+
T Consensus 112 ~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~ 186 (359)
T 3fvq_A 112 TAQERQRIEAMLELTGISELAGRYPH-----ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR 186 (359)
T ss_dssp SHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 45667789999999999998888874 7999999999999999999999999999999999999999998888776
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++| ...++.+++|+|+||++|++++.|+++++..
T Consensus 187 ~~g~tvi~vTH-d~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 187 ANGKSAVFVSH-DREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp HTTCEEEEECC-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCCCEEEEEeC-CHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 67888888766 4457889999999999999999999998864
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.84 E-value=4.7e-24 Score=247.99 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=134.7
Q ss_pred eEEeecceEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCccccc
Q 000979 629 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA 688 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge--------------------~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~ 688 (1202)
+.+|++||+++++|| ++||+||||||||||+|+|+|...+ .+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc----e
Confidence 347999999999999 9999999999999999999997653 3678888886542 1
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHH
Q 000979 689 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTI 766 (1202)
Q Consensus 689 ~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqRv~i 766 (1202)
+ ++++|++ .++.+|+.|++.++. . +..++++++.+++.+..... .|||| ||||+.|
T Consensus 110 ~--~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 E--RHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C--CEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e--EEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 7899985 567889988875531 0 11257888888887653222 28999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCCCH-HHHHhcceE
Q 000979 767 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG----RTVVCTIHQPSI-DIFEAFDEL 826 (1202)
Q Consensus 767 a~aL~~----------~p~illlDEPtsgLD~~~~~~v~~~l~~~~-----~~g----~tvi~~~H~~~~-~~~~~~d~v 826 (1202)
|++|+. +|++++|||||+|||+.++..+++.|+++. +.| .++++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999884 322 678899998762 266777777
Q ss_pred E
Q 000979 827 F 827 (1202)
Q Consensus 827 ~ 827 (1202)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
No 75
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.84 E-value=3.6e-21 Score=220.49 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=106.7
Q ss_pred hhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
...+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|++
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 34556677889999999999998888774 7999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++.++|+|+++| ...++.+++|+|+||++|++++.|+++++.+
T Consensus 179 l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 179 LHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 87666888887766 4457889999999999999999999998864
No 76
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.83 E-value=4.1e-21 Score=212.09 Aligned_cols=115 Identities=23% Similarity=0.220 Sum_probs=101.1
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhc------CCeEeeeeCCCccccHHHHHHHHHHH
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCL 114 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~------~P~ILlLDEpTSGLDs~sa~~vv~~L 114 (1202)
++.++.++++++.+||.+..|..++ .|||||||||+|||||+. +|+||+|||||||||+.++.++++.|
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l 190 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL 190 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 4456678999999999998888774 799999999999999999 99999999999999999999999999
Q ss_pred HHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 115 RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 115 ~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+++.+++++|||+++|. ...+.+.+|+|++|++|++++.|+++++.
T Consensus 191 ~~l~~~~~~tvi~vtHd-l~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 191 RQLTRQEPLAVCCVLHD-LNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHHSSEEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHHHcCCCEEEEEEcC-HHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99876666677776553 34667789999999999999999998875
No 77
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.83 E-value=3.7e-21 Score=209.03 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCC
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~t 123 (1202)
++.++++++.+||.+..|..++ +||||||||++|||||+.+|++|+|||||||||+.++..+++.+++++++.++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~ 178 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 5668899999999998888774 79999999999999999999999999999999999999999999998655577
Q ss_pred EEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 124 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 124 TiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|||++.|.. .++.+.+|+|++|++|++++.|+++++.+
T Consensus 179 tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 179 PILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp CEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 888776643 45778899999999999999999988763
No 78
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.83 E-value=6.5e-21 Score=209.71 Aligned_cols=115 Identities=20% Similarity=0.296 Sum_probs=101.4
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++|+|||||||||+.++..+++.++++++
T Consensus 134 ~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~- 207 (263)
T 2olj_A 134 EKAEAKAMELLDKVGLKDKAHAYPD-----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN- 207 (263)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 4456678999999999998888764 7999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|||++.|.. ..+.+.+|+|++|++|++++.|+++++.+
T Consensus 208 ~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 208 EGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp TTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 478888887654 35667899999999999999999988763
No 79
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.83 E-value=5.8e-21 Score=207.37 Aligned_cols=115 Identities=23% Similarity=0.232 Sum_probs=98.7
Q ss_pred hhhhhHHHHHHHHHhCCccc-ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~-~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++..+.++++++.+||.+. .|..+ .+|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++.
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 118 GEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 44556778889999999875 36665 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.++|||+++|.+. ..+.+|+|++|++|++++.|+.+++.
T Consensus 193 ~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 193 EEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhhc
Confidence 655888888877664 56899999999999999999987753
No 80
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.83 E-value=6.8e-21 Score=217.06 Aligned_cols=118 Identities=22% Similarity=0.309 Sum_probs=104.8
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
..++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||..++.++.+.|+++.
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 345566789999999999998888774 799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|.. .++..++|+|++|++|++++.|+++++.+
T Consensus 193 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 193 DEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 65578888877643 57788999999999999999999998853
No 81
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=1.1e-20 Score=203.68 Aligned_cols=109 Identities=24% Similarity=0.314 Sum_probs=97.2
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++|+|||||||||+.++..+.+.+++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 115 KEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 3445678899999999998888774 79999999999999999999999999999999999999999999998654
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCc
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 157 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~ 157 (1202)
++|||++.|... ..+.+|+|++|.+|++++.|++
T Consensus 190 -g~tvi~vtHd~~--~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 190 -GTSIVMVTHERE--LAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp -TCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEEC
T ss_pred -CCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEeee
Confidence 889998888743 3489999999999999999975
No 82
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.83 E-value=9.2e-21 Score=208.83 Aligned_cols=112 Identities=24% Similarity=0.253 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++++ .
T Consensus 129 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~ 202 (257)
T 1g6h_A 129 EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K 202 (257)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C
Confidence 345678899999999998888774 7999999999999999999999999999999999999999999999865 4
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
++|||++.|... .+.+.+|+|++|.+|++++.|+++++
T Consensus 203 g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (257)
T 1g6h_A 203 GITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEE 240 (257)
T ss_dssp TCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHHh
Confidence 889998887654 56788999999999999999999883
No 83
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.83 E-value=6.4e-21 Score=210.41 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=100.7
Q ss_pred hhhhHHHHHHHHHhCCccc-ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 41 QEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~-~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
++.++.++++++.+||.+. .|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+.+.++++++
T Consensus 127 ~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 201 (262)
T 1b0u_A 127 HDARERALKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE 201 (262)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 4456678999999999988 888764 7999999999999999999999999999999999999999999999865
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|||+++|.. ..+.+.+|+|++|++|++++.|+++++.+
T Consensus 202 -~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 202 -EGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp -TTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 477888776653 35667899999999999999999988763
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.83 E-value=1.6e-24 Score=231.92 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=116.7
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
...+++| .++++||+++|+||||||||||+|+|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 4557888 6999999999999999999999999999764 223333333332211 2345689999998777777777
Q ss_pred HHHHHHHHccC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000979 708 ESLLFSAWLRL---SPEVDSETRKMFIDEV------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 778 (1202)
Q Consensus 708 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ill 778 (1202)
|++........ ....+.++.++++++. ++.+|+.+..+.. .+.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 76532110100 0012233333444444 3344444333333 23466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 779 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 779 lDEPtsgL----D~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||+|+ |+..+..+.+.++++.+ .|.|+|++||+++ ++.+.|||+++|.+.|+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 99999998 78899999999999974 4899999999986 68899999999965443
No 85
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.83 E-value=8.5e-21 Score=217.11 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=104.5
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
..++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 345556788999999999998888774 799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|.. .++.+++|+|++|++|++++.|+++++.+
T Consensus 181 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 181 KELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 65578888876644 47789999999999999999999998864
No 86
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.82 E-value=9.7e-21 Score=216.39 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=104.1
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 107 KDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp HHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999998888774 7999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++|.. .++..++|+|++|++|++++.|+++++.+
T Consensus 182 ~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 182 ELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 5578888877654 46788999999999999999999998864
No 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.82 E-value=1.4e-21 Score=202.79 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 723 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 723 (1202)
.++|+||||||||||+++|+|...- ...|... .+......++.+||++|+. ++.+++ + +.+. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~~ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----FT 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----CC
Confidence 5899999999999999999996531 2233211 1111012356789999975 222332 0 0000 00
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q 000979 724 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMR 796 (1202)
Q Consensus 724 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a-----L~~~p~illlDE--PtsgLD~~~~~~v~~ 796 (1202)
-.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....+.+
T Consensus 66 ----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 66 ----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00112222 24699999999999996 999999999999 999999999999988
Q ss_pred HHHHHHhCCCEEEEEec--CCCHHHHHhcceEEEEecCCEEEEE
Q 000979 797 TVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 797 ~l~~~~~~g~tvi~~~H--~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
.+++ .+.|+|+++| +....+...+|| .+|+++..
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r-----~~~~i~~~ 160 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL-----PGAVLIEL 160 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC-----TTCEEEEC
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc-----CCcEEEEe
Confidence 8865 4778999997 223356667787 34666553
No 88
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.82 E-value=1.2e-20 Score=217.35 Aligned_cols=118 Identities=22% Similarity=0.273 Sum_probs=104.7
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.
T Consensus 112 ~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 186 (372)
T 1g29_1 112 PRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186 (372)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence 345566788999999999998888774 799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|.. .++..++|+|++|++|++++.|+++++.+
T Consensus 187 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 187 RQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 65578888877754 57788999999999999999999998864
No 89
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.82 E-value=1.5e-20 Score=215.82 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=104.0
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.+
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999998888774 7999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++|.. .++.+++|+|++|++|++++.|+++++..
T Consensus 190 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 190 KLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 5578888876643 47789999999999999999999998864
No 90
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.82 E-value=1e-20 Score=216.50 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=104.2
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.+++++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||+.++.++.+.|+++.+
T Consensus 114 ~~~~~~~v~~~l~~~~L~~~~~~~~~-----~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 114 KEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188 (353)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999998888774 7999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++|.. .++.+++|+|++|++|++++.|+++++.+
T Consensus 189 ~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 189 RLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 5678888877754 47888999999999999999999998863
No 91
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=1.7e-20 Score=205.80 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++.. .
T Consensus 122 ~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~ 195 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E 195 (256)
T ss_dssp HHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C
Confidence 345668899999999998888764 7999999999999999999999999999999999999999999999764 5
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++|||++.|.+ ..+.+.+|++++|.+|++++.|+++++.+
T Consensus 196 g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 196 GLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 78888877654 34556799999999999999999988865
No 92
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.7e-20 Score=231.08 Aligned_cols=103 Identities=27% Similarity=0.365 Sum_probs=92.3
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +.+..|||||||||+|||||+++|+||+|||||||||+.++..+++.+++.. +++|++++| |+.
T Consensus 464 ~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it---H~l 538 (587)
T 3qf4_A 464 SLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIIT---QKI 538 (587)
T ss_dssp TSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEE---SCH
T ss_pred hcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEe---cCh
Confidence 46678999998 6778899999999999999999999999999999999999999999999864 344555566 677
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+|+++
T Consensus 539 ~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 539 PTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8889999999999999999999999985
No 93
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.81 E-value=1.6e-20 Score=231.42 Aligned_cols=103 Identities=27% Similarity=0.347 Sum_probs=90.5
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +++..|||||||||+|||||+++|+||+|||||||||+.++..+.+.+++.. + ++|+|+.. |+.
T Consensus 462 ~lp~g~~t~~~-~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~it--H~l 536 (578)
T 4a82_A 462 NLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-K-DRTTLIVA--HRL 536 (578)
T ss_dssp TSTTGGGCBCC-GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEEC--SSG
T ss_pred hCcchhhhhhc-cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEe--cCH
Confidence 45678999998 6778899999999999999999999999999999999999999999998864 3 45555543 556
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+|+++
T Consensus 537 ~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 537 STITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 6788999999999999999999999985
No 94
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.81 E-value=2.8e-20 Score=211.92 Aligned_cols=111 Identities=22% Similarity=0.197 Sum_probs=101.0
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT 124 (1202)
++++++++.+||++..|..++ +|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++.++|
T Consensus 106 ~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 678999999999998888774 799999999999999999999999999999999999999999999987666788
Q ss_pred EEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 125 iIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+|+++|.. .++.+++|+|++|++|++++.|+++++.
T Consensus 181 ii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 88877644 5788999999999999999999998885
No 95
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.81 E-value=2.4e-20 Score=230.26 Aligned_cols=114 Identities=23% Similarity=0.317 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhCCc-------ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLD-------VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~-------~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.+++.++..||. +..||.+| +.+..||||||||++|||||+++|+||+|||||||||+.++..+.+.+++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~-~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 447 REQIEQAARQAHAMEFIENMPQGLDTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccchhc-CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 44567788887775 46889998 66788999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.. + ++|+|+.. |+.++.+.+|+|++|++|++++.|+|+|+.+
T Consensus 526 ~~-~-~~tvi~it--H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 526 LQ-K-NKTVLVIA--HRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred Hc-C-CCEEEEEe--cCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 74 3 55555544 5567788999999999999999999999974
No 96
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.81 E-value=2.5e-20 Score=230.71 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhCC-------cccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGL-------DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL-------~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.+++.++..|| ++..||.+| +.+..|||||||||+|||||+++|+||+|||||||||+.++..+++.+++
T Consensus 450 ~~~~~~~~~~~~l~~~~~~l~~g~~~~~~-~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 450 AEEIQRVAEVANAVAFIRNFPQGFNTVVG-EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp HHHHHHHHHHTTCHHHHHTSSSGGGCBCS-SSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 4556778888775 567899998 66788999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
..+ ++|+|+.. |+.++.+.+|+|++|++|++++.|+|+|+++
T Consensus 529 ~~~--~~tvi~it--H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 529 LMD--GRTVLVIA--HRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHT--TSEEEEEC--CCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred Hhc--CCEEEEEe--cCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 753 45555554 5567788999999999999999999999874
No 97
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.81 E-value=3.4e-20 Score=203.33 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||..++..+.+.++++.++.
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 104 HDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 335668899999999998887764 799999999999999999999999999999999999999999999986544
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|||++.|.+ ..+.+.+|+|++|++|+ ++.|+++++.
T Consensus 179 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 179 NMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp CCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 78888877654 35668899999999999 9999988764
No 98
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.81 E-value=3.2e-20 Score=205.43 Aligned_cols=114 Identities=23% Similarity=0.358 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHhCCc--ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 42 EANVITDYYLKVLGLD--VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~--~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+.++.++++++.+||. +..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++.+
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 186 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcccccCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 4456788999999999 88888774 7999999999999999999999999999999999999999999999865
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+ ++|||++.|.+. .+.+.+|+|++|++|++++.|+++++.+
T Consensus 187 ~-g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 187 L-GKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp T-TCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred c-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 4 889998888665 4567899999999999999999988864
No 99
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=2.1e-20 Score=203.75 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHhC-CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 42 EANVITDYYLKVLG-LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 42 ~~~~~v~~il~~lg-L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
+.++.++++++.++ |.+..|..++ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++++
T Consensus 114 ~~~~~~~~~l~~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~- 187 (240)
T 1ji0_A 114 GIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ- 187 (240)
T ss_dssp HHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcccHhhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-
Confidence 44566788999994 9888777764 7999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||++.|.+ .++.+.+|+|++|++|++++.|+++++.
T Consensus 188 ~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 188 EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 577777776654 3677899999999999999999988875
No 100
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.81 E-value=2e-20 Score=230.93 Aligned_cols=114 Identities=23% Similarity=0.302 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhCCc-------ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLD-------VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~-------~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.+++.++..||. +..||.+| +.+..|||||||||+|||||+++|+||+|||||||||+.++..+++.+++
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~-~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 44567788888775 47899998 66788999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.. +++|+|+..| +.++.+.+|+|++|++|++++.|+|+|+++
T Consensus 526 ~~--~~~tvi~itH--~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 526 LQ--KNRTSLVIAH--RLSTIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HH--TTSEEEEECS--CGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred Hh--CCCEEEEEec--cHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 75 3566666555 456778999999999999999999999975
No 101
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.81 E-value=2.3e-20 Score=207.38 Aligned_cols=113 Identities=28% Similarity=0.360 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|+||+|||||||||..++..+++.|+++..+
T Consensus 137 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~- 210 (279)
T 2ihy_A 137 EIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS- 210 (279)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-
Confidence 345668889999999998888774 79999999999999999999999999999999999999999999998654
Q ss_pred CCEE--EEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTA--VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTi--IiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|| |++.|.. ..+.+.+|+|++|++|++++.|+++++.
T Consensus 211 g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 211 YPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp CTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred CCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6777 7666654 3566889999999999999999988764
No 102
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.80 E-value=6.1e-20 Score=203.11 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 42 EANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
+.++.++++++.+||. +..|..++ .+|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++. +
T Consensus 138 ~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~ 212 (267)
T 2zu0_C 138 DFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR-D 212 (267)
T ss_dssp HHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-h
Confidence 3456788999999996 56777764 2599999999999999999999999999999999999999999998875 3
Q ss_pred CCCEEEEEecCCChHHHhh-hcceEEecCCcEEEEcCcchHHHHHHhCCC
Q 000979 121 NSGTAVISLLQPAPETYDL-FDDIILLSDGQIVYQGPRELVLEFFASMGF 169 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~-fD~IvvL~~G~vvy~G~~~el~~~F~~lG~ 169 (1202)
.++|||++.|.+. .+... +|+|++|.+|++++.|+++++.. ....||
T Consensus 213 ~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 213 GKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp SSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred cCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 5788888887654 33344 89999999999999999988754 334444
No 103
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.80 E-value=5e-20 Score=202.10 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHhCC-cccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 42 EANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL-~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
+.++.++++++.+|| .+..|..++ .+|||||||||+|||||+.+|+||+|||||||||+.++..+.+.|+++.+
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~- 191 (250)
T 2d2e_A 117 EFWTKVKKALELLDWDESYLSRYLN----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG- 191 (250)
T ss_dssp HHHHHHHHHHHHHTCCGGGGGSBTT----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-
Confidence 335668889999999 588888875 13999999999999999999999999999999999999999999998754
Q ss_pred CCCEEEEEecCCChHHHhh-hcceEEecCCcEEEEcCcch
Q 000979 121 NSGTAVISLLQPAPETYDL-FDDIILLSDGQIVYQGPREL 159 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~-fD~IvvL~~G~vvy~G~~~e 159 (1202)
.++|||++.|.+. .+... +|+|++|++|++++.|+++.
T Consensus 192 ~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 192 PNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp TTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred cCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 5789888888654 44455 59999999999999999873
No 104
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.80 E-value=6.3e-20 Score=200.59 Aligned_cols=113 Identities=28% Similarity=0.392 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhCCcccc-------cccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLDVCA-------DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~-------dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.++++++.+||.+.. +|.++ +.+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.|++
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 112 VEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp HHHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 34567788889987644 45565 55678999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+. .++|||++.|.+. ..+.+|+|++|++|++++.|+++++.
T Consensus 191 ~~--~g~tviivtH~~~--~~~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 191 IC--KGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HH--TTSEEEEECSSGG--GGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred Hc--CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 73 4788888877654 44669999999999999999998886
No 105
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=2.9e-20 Score=229.79 Aligned_cols=103 Identities=22% Similarity=0.305 Sum_probs=91.0
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +.+..|||||||||+|||||+++|+||+|||||||||+.++..+.+.+++.. +++|+|+..|+ .
T Consensus 476 ~~~~g~~t~~~-~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~--l 550 (598)
T 3qf4_B 476 HLPEGYETVLT-DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHR--L 550 (598)
T ss_dssp TSTTGGGCBCH-HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCC--T
T ss_pred hccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecC--H
Confidence 45678999999 6778899999999999999999999999999999999999999999999874 45666665554 4
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+|+++
T Consensus 551 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 551 NTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp THHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 5678899999999999999999999985
No 106
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.79 E-value=7.9e-20 Score=202.53 Aligned_cols=109 Identities=19% Similarity=0.319 Sum_probs=91.5
Q ss_pred HHHHHHHh--CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE
Q 000979 47 TDYYLKVL--GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124 (1202)
Q Consensus 47 v~~il~~l--gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT 124 (1202)
++.+++.+ ||.+..+.. ...|||||||||+|||||+.+|+||+|||||||||..++..+++.|+++.++.++|
T Consensus 135 ~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~t 209 (271)
T 2ixe_A 135 AHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209 (271)
T ss_dssp CHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSE
T ss_pred HHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 45566766 665554444 45899999999999999999999999999999999999999999999875445788
Q ss_pred EEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 125 iIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||++.|.+ +....+|+|++|++|++++.|+++++..
T Consensus 210 viivtHd~--~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 210 VLLITQQL--SLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EEEECSCH--HHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 88877764 4556799999999999999999998864
No 107
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.79 E-value=9.6e-20 Score=198.89 Aligned_cols=111 Identities=23% Similarity=0.226 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCe-------EeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~-------ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.++++++.+||.+..|..+ ..||||||||++|||||+.+|+ +|+|||||||||..++..+.+.|++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 456788999999999888766 4799999999999999999999 9999999999999999999999999
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+++ .++|||++.|.+ ..+.+.+|++++|++|++++.|+++++.
T Consensus 179 l~~-~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 179 LSQ-QGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHH-TTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred HHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 865 478888876654 3556899999999999999999988774
No 108
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.79 E-value=1.3e-19 Score=199.73 Aligned_cols=112 Identities=25% Similarity=0.319 Sum_probs=95.4
Q ss_pred HHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 46 ITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 46 ~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++.++.+| |++..||.++ +.+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++.
T Consensus 124 ~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 124 EVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 3455666665 4556788887 5578899999999999999999999999999999999999999999999874
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++|||++.|.+. ..+.+|+|++|++|++++.|+++++..
T Consensus 203 --~~~tviivtH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 203 --KNRTLIIIAHRLS--TISSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp --TTSEEEEECSSGG--GSTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred --CCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 3678888888765 346699999999999999999998864
No 109
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=2.2e-21 Score=214.92 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 723 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 723 (1202)
.++|+||||||||||+|+|+|... +.+|++.++|.+......++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999765 4589999999877555556789999999999999999999988754321 111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 724 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 724 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
.+ .+.+.++ .+..+... .+||||||||++|||+++. +++|||||.|||+.. .+.++++.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1223322 22333332 3699999999999999875 999999999999987 455666655
Q ss_pred CCCEEEEEecCC
Q 000979 804 TGRTVVCTIHQP 815 (1202)
Q Consensus 804 ~g~tvi~~~H~~ 815 (1202)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999864
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=1.7e-18 Score=216.97 Aligned_cols=108 Identities=24% Similarity=0.376 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 000979 729 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 805 (1202)
Q Consensus 729 ~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g 805 (1202)
++++ .++.+||.+. .++.+ ..|||||||||+||++|..+| ++|+|||||+|||+.....+.++|+++++.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3444 5778898765 45543 579999999999999999999 5999999999999999999999999998889
Q ss_pred CEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCcc
Q 000979 806 RTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGRH 844 (1202)
Q Consensus 806 ~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~~ 844 (1202)
.|||+++|++. +.+.+|++++|. +||++++.|++++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 99999999974 667899999994 57999999998753
No 111
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.78 E-value=9.4e-20 Score=199.13 Aligned_cols=114 Identities=23% Similarity=0.247 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhCCccccc-------ccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLDVCAD-------TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~d-------T~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.++++++.+||.+..+ |.++ +.+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.+++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 106 DEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCccchhchhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 345778899999987654 4455 45678999999999999999999999999999999999999999999998
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+. .++|||++.|.+ +..+.+|+|++|++|++++.|+++++.+
T Consensus 185 ~~--~~~tvi~vtH~~--~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 185 LM--KGRTTLVIAHRL--STIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HH--TTSEEEEECCSH--HHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred hc--CCCEEEEEeCCh--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 75 478888887765 4456799999999999999999998864
No 112
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.78 E-value=1.3e-20 Score=211.74 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=118.9
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 701 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~ 701 (1202)
++++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997542 258999999875431 12 346899999988 88
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 779 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--illl 779 (1202)
|.+|++|++.++... ..+ ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~----~~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHT----TCS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHc----CCc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 889999999876421 110 13456677766655543 4699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 814 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~ 814 (1202)
| ||+|||+... ++++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999999854 24444 358999999994
No 113
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.77 E-value=2.6e-19 Score=196.87 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 43 ANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
.++.++++++.+||. +..|..+ ..||||||||++|||||+.+|+||+|||||||||+.++..+.+.|+++. +
T Consensus 104 ~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~--~ 176 (263)
T 2pjz_A 104 DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG--K 176 (263)
T ss_dssp CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC--S
T ss_pred HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc--C
Confidence 345678899999998 8777766 4799999999999999999999999999999999999999999998753 2
Q ss_pred CCEEEEEecCCChHHHhhhc-ceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFD-DIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD-~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+|++.|.+ ..+.+.+| ++++|++|++++.|+++++.+
T Consensus 177 --tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 177 --EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp --EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred --cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 777776655 35668899 999999999999999988863
No 114
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.4e-19 Score=209.18 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=98.6
Q ss_pred hhhhHHHHHHHHHhCCccccc-------ccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHH
Q 000979 41 QEANVITDYYLKVLGLDVCAD-------TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 113 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~d-------T~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~ 113 (1202)
...++.++++++.+||.+..+ |.++ +.+.+|||||||||+|||||+.+|+||+|||||||||+.++.++.+.
T Consensus 119 ~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~-~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 119 AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLV-DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC-TTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCHHHHhhcccccccccc-cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 344566788999999987554 4454 44567999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 114 LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 114 L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|++.. .++|+|++.|+. +....+|+|+||++|++++.|+++++.+
T Consensus 198 l~~~~--~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 198 LKQAF--ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHTTT--TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHHHh--CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 98753 467777776663 6777899999999999999999999864
No 115
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.77 E-value=9.1e-23 Score=227.59 Aligned_cols=170 Identities=12% Similarity=0.149 Sum_probs=123.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+|.|+ ..+|+|+|++|++||+++|+||||||||||+++|+|.. +|+|
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I------- 154 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV------- 154 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE-------
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE-------
Confidence 377888887763 23699999999999999999999999999999999976 2455
Q ss_pred CcccccceEEEeecCCCCCCCCCHHH-HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
++|++|++.+++ .|++| |+.+.. ..+. .+.+.++.+ +.+..| | ..||||||
T Consensus 155 --------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqk 206 (305)
T 2v9p_A 155 --------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRK 206 (305)
T ss_dssp --------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCS
T ss_pred --------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHH
Confidence 346677776665 47776 765521 1111 234555553 333333 2 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|| ||||+++|+||| ||+||+.++..+.. .+|+++ ..+.+|++ +|+ +|++++.|+.
T Consensus 207 QR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~ 261 (305)
T 2v9p_A 207 HK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD 261 (305)
T ss_dssp SC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH
Confidence 99 999999999999 99999999988852 188875 46789999 997 4899999986
Q ss_pred CccchhHHHHHhhC
Q 000979 842 GRHSCHLISYFEAI 855 (1202)
Q Consensus 842 ~~~~~~~~~~f~~~ 855 (1202)
+ ++..+|..+
T Consensus 262 ~----el~~~y~~l 271 (305)
T 2v9p_A 262 A----DWKSFFVRL 271 (305)
T ss_dssp H----HHHHHHHHS
T ss_pred H----HHHHHHHHH
Confidence 3 345555543
No 116
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.75 E-value=6.4e-19 Score=191.50 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=85.6
Q ss_pred cccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHH---HHhHhCCCEEEEEecCCChH
Q 000979 59 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPE 135 (1202)
Q Consensus 59 ~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~---~~a~~~~tTiIiaihQp~~s 135 (1202)
..+|.++ ..+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.++ +. ..++|+|++.|.+..
T Consensus 116 ~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~~~~tviivtH~~~~- 191 (237)
T 2cbz_A 116 GDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM--LKNKTRILVTHSMSY- 191 (237)
T ss_dssp GGGSEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST--TTTSEEEEECSCSTT-
T ss_pred ccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh--cCCCEEEEEecChHH-
Confidence 3456676 5678899999999999999999999999999999999999999999985 32 247899998888764
Q ss_pred HHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 136 TYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 136 ~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+.+|+|++|++|++++.|+++++.+
T Consensus 192 -~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 192 -LPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp -GGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 35799999999999999999998864
No 117
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.75 E-value=1.1e-19 Score=207.39 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=103.8
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+++++|+.+++|++++|+||||||||||+++|+|..++ .+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 68999999999999999999999999999999998664 36899998864211 11222233321
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++.+.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356777776543458999999987 67889999999864
No 118
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.75 E-value=1.4e-22 Score=218.21 Aligned_cols=175 Identities=10% Similarity=-0.017 Sum_probs=107.2
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCCCCCCCCCH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
-|+||||++++|++++|+||||||||||+++|+|..+ |++.+ |.+... ...++.++|++|++..++.++.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4999999999999999999999999999999999762 56777 654321 1234567899998655543321
Q ss_pred -HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEEE
Q 000979 707 -YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIFM 779 (1202)
Q Consensus 707 -~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~i-----a~aL~~~p~illl 779 (1202)
.+++.+. .+..+ ...+ +..++++++...+. ..+ ..||||||||++| +++|+.+|++++|
T Consensus 86 ~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 86 NEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred ccchhhhh-hcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1111100 00000 0011 12356666654321 111 2599999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCCHHHHHhcceE
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
||||+++|..+...+.+.|+++.+ .+.+.|+++|+++ +.++..|++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 999999999999999998887643 2344455555543 344444443
No 119
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=9.5e-18 Score=193.06 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 753 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 753 ~~~LSgGqrq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
++.||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++ ++.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4579999999 67788888889999999999999999999999999999877789999999995 467899999
Q ss_pred EEEec
Q 000979 827 FLMKR 831 (1202)
Q Consensus 827 ~~l~~ 831 (1202)
+.|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99963
No 120
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.75 E-value=4.4e-20 Score=210.98 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=119.8
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CCC
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 702 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~ 702 (1202)
+++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999997542 258999999876431 12 346899999988 888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 780 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--illlD 780 (1202)
.+|++|++.++... ..+ ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 89999999876421 110 13455677766655543 4699 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000979 781 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 814 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~ 814 (1202)
||+|||+..+. +++. +.|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998652 3444 358999999994
No 121
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.74 E-value=1.2e-20 Score=222.38 Aligned_cols=174 Identities=16% Similarity=0.087 Sum_probs=136.3
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc---cCCc--------ccccceEEEeecC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ--------ETFARISGYCEQN 697 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~--------~~~~~~~~~v~q~ 697 (1202)
..+|+++ +++.+||+++|+||||||||||+++|+|...+ ..|.+.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 99999999999999999999999999998763 4799999997 3321 2356789999995
Q ss_pred -CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 698 -DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 698 -~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+..++.+|+.+|+.+.+....... + ......|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------~------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------Q------HVLLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------C------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------C------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 556677899999987653211000 0 00111122 24599999 999999 889988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|+|||+.....+.+.++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999865 3 64 9999999987 467899999984 899998864
No 122
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.74 E-value=5.1e-18 Score=194.39 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 755 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998763 699999994 4 2 8899
Q ss_pred EEEEecCCEEEEEcCCCc
Q 000979 826 LFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 826 v~~l~~gG~~~~~G~~~~ 843 (1202)
+++|.+ |+++..|++++
T Consensus 337 i~~l~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEM 353 (359)
T ss_dssp EEEEET-TEEEECCCTTT
T ss_pred EEEEEC-CEEEecCCHHH
Confidence 999985 89999998754
No 123
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.73 E-value=1.8e-18 Score=186.99 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=83.1
Q ss_pred cccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHH-HHHhHhCCCEEEEEecCCChHHH
Q 000979 59 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETY 137 (1202)
Q Consensus 59 ~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L-~~~a~~~~tTiIiaihQp~~s~~ 137 (1202)
..+|.+| +.+..|||||||||+|||||+.+|+||+|||||||||+.++..+++.+ ++.. .++|||++.|++ +..
T Consensus 119 ~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~--~~~ 193 (229)
T 2pze_A 119 KDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM--EHL 193 (229)
T ss_dssp GGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH--HHH
T ss_pred ccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh--HHH
Confidence 3456676 456789999999999999999999999999999999999999999874 4433 367888887765 344
Q ss_pred hhhcceEEecCCcEEEEcCcchHH
Q 000979 138 DLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 138 ~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+.+|+|++|++|++++.|+++++.
T Consensus 194 ~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 194 KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 669999999999999999998886
No 124
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.71 E-value=9.5e-19 Score=198.02 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=114.8
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
.+|+++++.+++|++++|+||||||||||++.|+|...+. .| .+.+.+........++.+..+.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4699999999999999999999999999999999964311 24 45443333222222222222222211 12234
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 784 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqRv~ia~aL~~~p~illlDEPts--- 784 (1202)
++.... + +.++.++.++++++..++. ..+. ...+|.+| +||+. |+++..+|+++++||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 443221 1 1112223344444322221 1111 13588998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCC-H--------------------HHHHhcceEEEEecC
Q 000979 785 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRG 832 (1202)
Q Consensus 785 g---LD~-~~~~~v~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~v~~l~~g 832 (1202)
+ +|. .....+.+.|++++++ |.|||+++|+.. . .+.+.||++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 455 6678899999999765 999999999962 2 467789999999864
No 125
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.69 E-value=9.5e-18 Score=187.00 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=86.5
Q ss_pred HHHHHHhCCcc-------cccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHH-HHHhH
Q 000979 48 DYYLKVLGLDV-------CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIH 119 (1202)
Q Consensus 48 ~~il~~lgL~~-------~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L-~~~a~ 119 (1202)
+..++.++|.+ ..+|.++ +.+..||||||||++|||||+.+|+||+|||||||||+.++..+++.+ ++..
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~- 207 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM- 207 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-
T ss_pred HHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-
Confidence 34455555543 3456676 456789999999999999999999999999999999999999999874 3432
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|||++.|.+ +..+.+|+|++|++|++++.|+++++.+
T Consensus 208 -~~~tviivtHd~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 208 -ANKTRILVTSKM--EHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp -TTSEEEEECCCH--HHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCCEEEEEecCH--HHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 467888887765 4456799999999999999999998853
No 126
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.69 E-value=1.1e-16 Score=200.39 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHccCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 702 PFVTIYESLLFSAWLRLSPE---VDS---ETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
..+||.|++.|...+.++.. ... ++..+++ +.++.+||... .|+.+ ..|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 35899999999766643221 000 2233444 45788999764 45553 579999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCcc
Q 000979 775 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGRH 844 (1202)
Q Consensus 775 --~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~~ 844 (1202)
++|+|||||+|||+.....++++|+++++.|.|||+++|+++ ..+.+|+|++|. +||++++.|++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 999999999999999999999999999888999999999974 456899999993 57999999998753
No 127
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.68 E-value=9.9e-17 Score=159.98 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 753 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia------~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+..||||||||++|| |+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999876 899999999999999999999999999999999877799999999997 467899999
Q ss_pred EEEe
Q 000979 827 FLMK 830 (1202)
Q Consensus 827 ~~l~ 830 (1202)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 128
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.67 E-value=1.1e-18 Score=197.18 Aligned_cols=157 Identities=10% Similarity=-0.009 Sum_probs=108.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 718 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~ 718 (1202)
+++|+++||+||||||||||+++|+|...+. +|. +.+++|+|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 8999999999999999999999999965421 121 357999999999888 99999854211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000979 719 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 798 (1202)
Q Consensus 719 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l 798 (1202)
+.......+.+.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1111112334677888877 44433432 4699999999999999999999999999999998621 011
Q ss_pred HHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 799 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 799 ~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.++ -+ .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~--~D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDL--FD-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGG--CS-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHh--cC-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 111 12 346666654433334455555543
No 129
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.67 E-value=7.2e-17 Score=203.98 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=93.1
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCC---eEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P---~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
..+.++|+.+||.. ..+| .....|||||||||+|||||+++| +||+|||||||||..+...+++.|++++..
T Consensus 783 ~~~~~~L~~vGL~~---~~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~- 857 (916)
T 3pih_A 783 KRTLQVLHDVGLGY---VKLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR- 857 (916)
T ss_dssp HHHHHHHHHTTGGG---SBTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCch---hhcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-
Confidence 34667899999975 2344 445689999999999999999865 799999999999999999999999998754
Q ss_pred CCEEEEEecCCChHHHhhhcceEEe------cCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL------~~G~vvy~G~~~el~~ 162 (1202)
|.|||+.. |.+++++.+|+|++| .+|+++++|+++++.+
T Consensus 858 G~TVIvI~--HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 858 GNTVIVIE--HNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TCEEEEEC--CCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCEEEEEe--CCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 55555443 666888999999999 8999999999999973
No 130
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.67 E-value=9.7e-17 Score=203.90 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=109.2
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHH--------hCCCCCceEEEEEEEcCccCCcccccceEEEeecCCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 699 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l--------~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~ 699 (1202)
.+.+++|+++++++|++++|+||||||||||||++ .|...+ ..+. .++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~---------------~~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESA---------------EVSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEE---------------EEECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccc---------------cchHH---HH
Confidence 45689999999999999999999999999999999 443221 1110 01110 00
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSII 777 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~il 777 (1202)
++..+|+. |.. .+++|+|++++..+|++| +.+|+++
T Consensus 708 ----------------------------------i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 00111111 111 135888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 778 FMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 778 llDEPtsgLD~~~~~~v-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||||||+|||+.....+ +.+++.+++ .|.|+|++||+. ++.+++|++..+.+ |++...++.+
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~~ 809 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTEE 809 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEETT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecCC
Confidence 99999999999988888 667777776 499999999995 46789999999985 7999888764
No 131
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=6.9e-17 Score=197.00 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=115.5
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 715 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 715 (1202)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 4589999999999999999999999999864311 11 23456666531 12223221
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----H
Q 000979 716 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 790 (1202)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~-----~ 790 (1202)
+. ..+. ++ +...|+.+..+.. +..|||||+||+++|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 12 2234555544443 3469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCC---------HHHHHhcceEEEEecCCE
Q 000979 791 AAIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 791 ~~~v~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~d~v~~l~~gG~ 834 (1202)
+..+.++++.+++.|.|||+++|+.. ..+..++|++++|.+ |+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 99999999999888999999999971 245678999999986 44
No 132
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.67 E-value=9.4e-18 Score=216.05 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=112.3
Q ss_pred eEEeecceEEEeC-------CeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC
Q 000979 629 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~-------Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~ 701 (1202)
..+++|+++.+++ |++++|+||||||||||||+| |.... .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC--
Confidence 4689999999987 999999999999999999999 86531 1122238999752
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
.+||.|++.. + +|+.+..+. +.+.+|++++ ++++|++++++|+++||||
T Consensus 828 -~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~-~~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELS-ETASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEEE----E--------------------CC--------------CHHHHHHH-HHHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHH-HHHHHHHhCCCCcEEEEEC
Confidence 3555554410 1 111111111 1234777666 5999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE--EEcCC
Q 000979 782 PTSGLDARAA-AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI--YVGPL 841 (1202)
Q Consensus 782 PtsgLD~~~~-~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~--~~G~~ 841 (1202)
||+|+|+... ..++..|+.++++ |.++|++||+++ .+...+|++.++. |++. +.|++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~~ 937 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENEC 937 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC-----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecCc
Confidence 9999999884 5578899998876 999999999975 3556789988874 6777 45554
No 133
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.66 E-value=3.5e-18 Score=187.63 Aligned_cols=155 Identities=9% Similarity=0.001 Sum_probs=97.8
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+++.+|+|+||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567899999999999999999999999999999999853 111122 2356789999985 6778999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
.|++.+......... ......+.+.+.++.+ .+..+.. ...+|+||+||+++ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876543211110 0110112233444433 2333333 24699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000979 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 814 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~g~tvi~~~H~ 814 (1202)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2222 37899999996
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=3.5e-19 Score=217.30 Aligned_cols=167 Identities=20% Similarity=0.134 Sum_probs=113.9
Q ss_pred ceEEeecceE-EEeCCeEEEEEcCCCCCHHHHHHH--HhCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCC
Q 000979 628 KLVLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSP 702 (1202)
Q Consensus 628 ~~~iL~~vs~-~i~~Ge~~al~G~sGaGKSTLl~~--l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 702 (1202)
+.++|++||+ .+++||+++|+||||||||||+++ ++|...++ +|.|.++|.+... ...++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3457999999 999999999999999999999999 67875532 6899999987422 122345789988643211
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE 781 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~illlDE 781 (1202)
++.+ .... . ..+ ..++++.+++.+ +.-.+..+|. .+|++++|||
T Consensus 102 ------~l~~---~~~~-~-~~~-----~~~~l~~~~l~~-------------------~~~~~~~~LS~g~~~~lilDe 146 (525)
T 1tf7_A 102 ------KLFI---LDAS-P-DPE-----GQEVVGGFDLSA-------------------LIERINYAIQKYRARRVSIDS 146 (525)
T ss_dssp ------SEEE---EECC-C-CSS-----CCSCCSSHHHHH-------------------HHHHHHHHHHHHTCSEEEEEC
T ss_pred ------cEEE---EecC-c-ccc-----hhhhhcccCHHH-------------------HHHHHHHHHHHcCCCEEEECC
Confidence 1100 0000 0 000 001111112211 2333344442 4688999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH--------HHHhcceEEEEec
Q 000979 782 PTS-----GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID--------IFEAFDELFLMKR 831 (1202)
Q Consensus 782 Pts-----gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~--------~~~~~d~v~~l~~ 831 (1202)
||+ +||+..++.+.++++++++.|.|||+++|+++.. ...+||++++|.+
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 998 4699999999999999987899999999998731 2345999999986
No 135
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.64 E-value=5e-18 Score=194.21 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=129.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.++++..|.. +..+|+++ +.+.+||+++|+||||||||||+++|+|...++ .|.+.+.|++..
T Consensus 46 i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ 110 (347)
T 2obl_A 46 LLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGR 110 (347)
T ss_dssp TTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHH
T ss_pred eeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHH
Confidence 556677666531 24579999 999999999999999999999999999987643 688888886521
Q ss_pred c----------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 684 Q----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+ ..+++.+.++.|.+. ...+.+.-... ...+.+.....+ .+.... . ..+
T Consensus 111 ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~-l--d~~ 169 (347)
T 2obl_A 111 EVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLM-M--DSV 169 (347)
T ss_dssp HHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEE-E--ETH
T ss_pred HHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHH-H--hhH
Confidence 1 113456778887532 22222211100 000111111111 010000 0 013
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCCHHHHHhcceE
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~v 826 (1202)
..||+|| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||++ ...+|++
T Consensus 170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v 236 (347)
T 2obl_A 170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEV 236 (347)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHH
T ss_pred HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhhe
Confidence 4699999 899999 688887 999999999999999999864 477 9999999987 3678999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
.++.+ |+++..|++
T Consensus 237 ~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 237 RSILD-GHIVLTREL 250 (347)
T ss_dssp HHHCS-EEEEBCHHH
T ss_pred EEeeC-cEEEEeCCH
Confidence 99985 899998875
No 136
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.64 E-value=1.3e-17 Score=183.65 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=103.9
Q ss_pred eecce-EEEeCCeEEEEEcCCCCCHHHHHHHHh--CC-CCCceEEEEEEEcCccCCcc--cccceEEEeecCCCCCCCCC
Q 000979 632 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLA--GR-KTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 632 L~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~--g~-~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~lT 705 (1202)
|+++- +.+++||+++|+||||||||||+++|+ |. ..+ .|.+.+++...... ...+.+++++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 44442 489999999999999999999999999 55 322 35566666543211 11233566666543333334
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
+.++...... . . ..+. ... ....+-++..+...+..-..+|+++++||||++
T Consensus 96 ~~~~~~~~~~---------~-~---~~~~----------~~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVG---------L-P---SEEK----------FVL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEccccccc---------c-c---cccc----------eec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 3333211100 0 0 0000 000 011344555554444445689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH---------HHhc-ceEEEEec
Q 000979 786 LD-----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELFLMKR 831 (1202)
Q Consensus 786 LD-----~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~~-d~v~~l~~ 831 (1202)
|| +..+..+.++++.+++.|+|||+++|+++ +. ..+| |++++|++
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEee
Confidence 98 67777799999998878999999999986 34 5778 99999963
No 137
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.64 E-value=3.2e-16 Score=196.87 Aligned_cols=134 Identities=22% Similarity=0.296 Sum_probs=105.3
Q ss_pred CCCCHHHHHHHHHHccCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC-
Q 000979 702 PFVTIYESLLFSAWLRLSPEVD------SETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN- 773 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~- 773 (1202)
..+||.|.+.|...+.++.... .++..+++ +.++.+||... .++.+ ..|||||||||+||++|..+
T Consensus 467 ~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 467 CELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 4579999998854333221000 02233344 34788898754 45543 57999999999999999999
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCc
Q 000979 774 -PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 843 (1202)
Q Consensus 774 -p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 843 (1202)
|++|+|||||+|||+.....+.+.|+++++.|.|||+++|++. ..+.+|+|++|. +||++++.|++++
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 5899999999999999999999999999888999999999974 467899999994 5799999999754
No 138
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.63 E-value=6e-17 Score=178.37 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=96.4
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceE-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++... .+...++++|.
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 689999 89999999999999999999999999754 33 68998888764210 01111112110
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
.+++.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 122211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+...+ ++. ++.|.+|++++|+.+ ..+.+||++.|..
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 86544 433 356999999999976 5688999988853
No 139
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.62 E-value=1.2e-16 Score=170.10 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCC
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 123 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~t 123 (1202)
++.++++++.+||.+. +..+ ..||||||||++|||||+.+|++|+|||||||||+.++..+++.++++.+ .++
T Consensus 112 ~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~ 184 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKG 184 (214)
T ss_dssp HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCC
Confidence 4568889999999876 5554 58999999999999999999999999999999999999999999998764 478
Q ss_pred EEEEEecCCChHHHhhhcceEEecCCc
Q 000979 124 TAVISLLQPAPETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 124 TiIiaihQp~~s~~~~fD~IvvL~~G~ 150 (1202)
|||++.|.+. .+...+|+|++++ |+
T Consensus 185 tiiivtHd~~-~~~~~~d~v~~~~-~~ 209 (214)
T 1sgw_A 185 IVIISSREEL-SYCDVNENLHKYS-TK 209 (214)
T ss_dssp EEEEEESSCC-TTSSEEEEGGGGB-C-
T ss_pred EEEEEeCCHH-HHHHhCCEEEEeC-Cc
Confidence 8998888765 4566677776553 44
No 140
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.61 E-value=1.9e-16 Score=200.64 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=99.0
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++|||+++++|++++|+||||||||||||++++...... .|...... ...++.+ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 4678999999999999999999999999999999976311000 01001000 0111111 1111111111
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD 787 (1202)
+++ .. +.+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 124689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCCHHHHHhcceE
Q 000979 788 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 788 ~~~~~~v~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+.....+. .+++.+++ .|.|+|++||+++ +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99998887 77777765 5999999999964 55666654
No 141
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.60 E-value=9.6e-16 Score=152.84 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=70.1
Q ss_pred CcccccCccccchhhHH------HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhh
Q 000979 67 EMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 140 (1202)
Q Consensus 67 ~~~~gLSGGQKqRvsIA------raLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~f 140 (1202)
.....||||||||++|| |+|+.+|++|+|||||+|||..+...+.+.++++.. .++|||++.|++ +..+.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhC
Confidence 34578999999999876 899999999999999999999999999999998654 478888888876 567899
Q ss_pred cceEEe--cCCc
Q 000979 141 DDIILL--SDGQ 150 (1202)
Q Consensus 141 D~IvvL--~~G~ 150 (1202)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4553
No 142
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=1.1e-16 Score=173.96 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=92.7
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCC--CCCc---eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~--~~~~---~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
+.+++||+++|+||||||||||+++|+|. .+++ ...+.+.+++.+... .+.+++++|...+.+. |+.||+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~- 94 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHI- 94 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcE-
Confidence 57999999999999999999999999983 3211 113456665543100 0112222332222111 222221
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCCEEEEeCCC
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 783 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~aL~~-------~p~illlDEPt 783 (1202)
.+. ...+++ +++++..+++++. +|+++++||||
T Consensus 95 ---------------------------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 95 ---------------------------YVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ---------------------------EEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ---------------------------EEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 110 113333 3344566666666 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCCH---HHHHhcceEEEEecC
Q 000979 784 SGLDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSI---DIFEAFDELFLMKRG 832 (1202)
Q Consensus 784 sgLD~~-------~-----~~~v~~~l~~~~~~-g~tvi~~~H~~~~---~~~~~~d~v~~l~~g 832 (1202)
+++|+. . ...+++.|++++++ |.|||+++|..+. .+...+|+++.|.++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 23677788777644 9999999995431 266789999999863
No 143
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.58 E-value=5.1e-17 Score=183.26 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=85.7
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-CCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
++.+++|++|+| +|+||||||||||++.|.|. .. +.+| +.++|.+.......+.+++++|++.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 456899999998 99999999999999999996 44 3467 77777665332223457899998888888999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC-
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG- 785 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg- 785 (1202)
.|+..++..... .+..+..++.+.+ ..+.. .+++|||||||+.+||+++ ++++||||++
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 998877543210 0000111122211 12232 2469999999999988875 9999999985
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 000979 786 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 816 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~ 816 (1202)
||+... +.++++.++ +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 556666543 789999999864
No 144
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.56 E-value=1.1e-16 Score=179.91 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=103.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cc--cceEEEeecCCCCCCCCCHHHHHH
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.+++++|++...|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7899999999999999999999997553 258899999875321 11 345899999998888899999997
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
++..-. .+ ..+++..|+.+..+. -++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653110 00 012222333322211 2455669999999999999994433 3444444
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCC
Q 000979 792 AIVMRTVRNTVDT-GRTVVCTIHQPS 816 (1202)
Q Consensus 792 ~~v~~~l~~~~~~-g~tvi~~~H~~~ 816 (1202)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4566667776544 899999999743
No 145
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.56 E-value=6.2e-18 Score=181.29 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHHHHc
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFSAWL 716 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~ 716 (1202)
.++|++++|+||||||||||+++|+|...+ .++|++|++.++ +.+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 578999999999999999999999986431 368999998776 5679988865421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 000979 717 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 785 (1202)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqRv~ia~aL~~~p~illlDEPtsg------- 785 (1202)
..+.... .+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111111 23356777777776654443 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 000979 786 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 815 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~-~~~g~tvi~~~H~~ 815 (1202)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 146
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.56 E-value=1.1e-15 Score=190.99 Aligned_cols=134 Identities=19% Similarity=0.119 Sum_probs=97.6
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++|+|++ |++++|+||||||||||||+|+|.... +..|.+ ... .+..+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~------vpa--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSF------VPA--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCC------BSS--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCce------eeh--hccceeeHHH---hhccCCHH
Confidence 45789999999 999999999999999999999995310 001211 111 1345677765 34445554
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 782 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~illlDEP--- 782 (1202)
||+. .++|+|+++++.++++| +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 4331 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 783 TSGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 783 tsgLD~~~~-~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
|++||..+. ..+.+.|++ .|.|+|++||+. ++.+++
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 999999875 567777765 589999999985 345544
No 147
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.55 E-value=9.8e-16 Score=192.67 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=106.2
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++|+|++ ++|++++|+||||||||||||+|+|....+. .|..+... +..++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 9999999999999999999999998421000 12111111 123455544 34444555
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD 787 (1202)
|++..+ .+.+|++++ +++.+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 543210 113566665 4555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 788 ARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 788 ~~~~~~v-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
+.....+ +..++.+.+ .|.++|++||+++ +.+++|++..+.+ |++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEc
Confidence 9877775 778888877 4999999999974 5578888777764 67766543
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.52 E-value=3.2e-16 Score=180.26 Aligned_cols=164 Identities=18% Similarity=0.147 Sum_probs=98.1
Q ss_pred eecc-eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CC--ceEEEE-EEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 632 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYITGN-ITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 632 L~~v-s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~--~~--~~~~G~-i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
|+++ ++.+++|++++|+||||||||||++.|++.. ++ |...|. +++++.+.. .++.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 5565 6899999999999999999999999999854 21 111255 777775431 12234445554333221 2
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEE
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSIIF 778 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~-------~~p~ill 778 (1202)
+.||+.+. +. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 22222110 00 01467778888888877 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 779 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 779 lDEPtsgLD~~~------------~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
+||||+++|+.. ...+++.|+++++ .|.|||+++|... ..-..+++..... +|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 999999999852 3566667777765 4899999999865 3333344444444 455544433
No 149
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.51 E-value=4.5e-15 Score=170.19 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=85.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
...+|++++|+|||||||||||++|+|...+. ..|.|...+.+.. ...+...++++|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccc---------------
Confidence 67899999999999999999999999965321 1234433322221 111112233443221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000979 718 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 797 (1202)
Q Consensus 718 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~ 797 (1202)
.++-.+ +||++|..+|++|++|||| |.++.. .
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 122222 9999999999999999999 666543 4
Q ss_pred HHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 798 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 798 l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+.++++.|+||++|+|+.+. .+.+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 44456679999999999873 488999998853
No 150
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.50 E-value=1.1e-14 Score=168.66 Aligned_cols=83 Identities=25% Similarity=0.352 Sum_probs=72.8
Q ss_pred cccccCccccchhhHHHHHh------cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhc
Q 000979 68 MIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 141 (1202)
Q Consensus 68 ~~~gLSGGQKqRvsIAraLv------~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD 141 (1202)
....|||||||||+||+||+ .+|++|+|||||+|||+.+...+++.++++.. .+.|||++.|.+ +..+.+|
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~--~~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDR--EFSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCH--HHHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCC
Confidence 45689999999999999999 79999999999999999999999999998764 577887776655 4588899
Q ss_pred ceEEecCCcEEE
Q 000979 142 DIILLSDGQIVY 153 (1202)
Q Consensus 142 ~IvvL~~G~vvy 153 (1202)
+|++|.+|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999975
No 151
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.50 E-value=3.4e-14 Score=159.05 Aligned_cols=151 Identities=22% Similarity=0.207 Sum_probs=101.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
.+++|++++|+||||||||||++.+++.... |.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~----g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc----CCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4899999999999999999999999974332 333 23433211 2346777765432 11112211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---H
Q 000979 718 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 792 (1202)
Q Consensus 718 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts--gLD~~~~---~ 792 (1202)
. .... ...+++++.+++.+..+.. ...||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1222 1245677888877665543 356999998875 68899999999999999 9998544 7
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCC
Q 000979 793 IVMRTVRNTV-DTGRTVVCTIHQPS 816 (1202)
Q Consensus 793 ~v~~~l~~~~-~~g~tvi~~~H~~~ 816 (1202)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
No 152
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.49 E-value=1.2e-15 Score=188.09 Aligned_cols=166 Identities=12% Similarity=0.157 Sum_probs=107.4
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC------cccccceEEEeecCCCCCCCCCHHHH
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+++++. +||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.++|++|++.+++.+||+||
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 344544 999999999999999999998653 14899999998742 13467789999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------C
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------T 783 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP------t 783 (1202)
+.+......... .+ +| ++++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~~~~~----------------~~----------------~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAIAGEG----------------MG----------------IS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHHHCSS----------------SC----------------CC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHhcCCc----------------cc----------------cc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 987532110000 00 11 0112222223458999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCC------HHHHHhc-----ceEEEEecCCEEEEEcCC
Q 000979 784 SGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPS------IDIFEAF-----DELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 784 sgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~------~~~~~~~-----d~v~~l~~gG~~~~~G~~ 841 (1202)
+|||+..+..+.++++++.++ +.++++++|+.+ ..+.+.. ..++++.+ +..+..|+.
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~ 232 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTE 232 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccH
Confidence 999999999999999996443 678899999876 2233332 34566664 555555543
No 153
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.48 E-value=1.2e-16 Score=166.91 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=100.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 720 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~ 720 (1202)
||+++|+||||||||||+++|+|... . +| +.++|.+..+ ..+++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999653 2 36 7777765433 23567889999974 1111 111 01100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 000979 721 EVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 793 (1202)
Q Consensus 721 ~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv-~ia~---aL~~~p~illlDE--PtsgLD~~~~~~ 793 (1202)
+..+ ..+..++.. ...+|+|||+++ ++++ |+..+|++|+||| ||..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 011133332 235999999988 4454 6789999999999 899999876555
Q ss_pred HHHHHHHHHhCCCEEEE----EecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 794 VMRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 794 v~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
+.+++ +...++|+ ++|+.+ ..+.|++..+. +|+++...+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeCh
Confidence 54444 44455553 238764 24567777665 577776544
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.48 E-value=5.7e-14 Score=152.59 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=104.4
Q ss_pred EEeecceE-EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccc---eEEEeecCCCCCCCCC
Q 000979 630 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 630 ~iL~~vs~-~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~---~~~~v~q~~~~~~~lT 705 (1202)
..|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+.......+ ..++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----
Confidence 35888886 8999999999999999999999999975321 1233333332211100000 01111110000
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 783 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--illlDEPt 783 (1202)
++ +.. ++...+.++ .... ....|.+|.++...+.....+|+ ++++||||
T Consensus 83 --~~------~~~------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 --KK------LII------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp --TT------EEE------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred --CC------EEE------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 00 000 000000000 0000 12359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCC-------HHHHHhcceEEEEec
Q 000979 784 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKR 831 (1202)
Q Consensus 784 sgL--D~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~v~~l~~ 831 (1202)
+++ |+.....+++.|+++++ .|.|||+++|+.+ ..+.+.+|++++|.+
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888 99999999999999864 5999999999973 237788999999985
No 155
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.7e-15 Score=176.84 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=94.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+.++|++++|. ++.+++|+||+| +|+||||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 367778776542 245799999998 999999999999999999975421112222222111
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
....+.+++++|++.+.+.+||.||+.++.... .... ...+.+.+ + ..++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------H--------HHHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHH
Confidence 112356799999988888899999988764321 0000 11121111 0 125667788
Q ss_pred HHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 763 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 763 Rv~ia~aL~~~p~---illlDEPt-sgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
|++|||+++.+|+ +|++|||| .|||+... +.++++. .+.++|+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69999873 4445554 3778888888643
No 156
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.44 E-value=2.7e-15 Score=160.39 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=94.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CceEEEEEEEcCc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~---~~~~~G~i~~~g~ 680 (1202)
++++|+++.|.. .++++ +.+++|+.++|+|+||||||||+|.|+|... ..+..|.+...+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 577888888741 24777 8899999999999999999999999999651 0123444332111
Q ss_pred cCCcccccceEEEeecCCCCC----CCCC---HHHHHHHHHH-cc----------CCCCCCHHHHHHHHHHHHHHcCCCc
Q 000979 681 PKKQETFARISGYCEQNDIHS----PFVT---IYESLLFSAW-LR----------LSPEVDSETRKMFIDEVMELVELNP 742 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~----~~lT---v~e~l~~~~~-~~----------~~~~~~~~~~~~~~~~~l~~l~l~~ 742 (1202)
-. .....-++ +.+.+. +.-. .+..+..... .+ .....+. .+..+.+.++..++..
T Consensus 68 ~~----~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~ 140 (210)
T 1pui_A 68 FE----VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAV 140 (210)
T ss_dssp EE----EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCE
T ss_pred EE----ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCe
Confidence 00 00000011 111110 0000 1111211111 00 0011111 1223445556566543
Q ss_pred cccccccCCCCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000979 743 LRQSLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 807 (1202)
Q Consensus 743 ~~~~~~~~~~~~~LSgGqrqR-v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~t 807 (1202)
.. +++. ...+|+||||| +..+++++.+|+++++|||||++|......+.+.|.++.++|.|
T Consensus 141 ~~---v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 141 LV---LLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EE---EEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EE---EEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 21 1111 23589999999 89999999999999999999999999999999999988766644
No 157
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.43 E-value=3.4e-13 Score=138.05 Aligned_cols=75 Identities=11% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 753 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|++||+. .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35699999999999999974 4699999999999999999999999998854 57899999985 46789999987
Q ss_pred Ee
Q 000979 829 MK 830 (1202)
Q Consensus 829 l~ 830 (1202)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 158
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.41 E-value=1.7e-13 Score=140.16 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=63.6
Q ss_pred ccccCccccchhhHHHHHh----cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceE
Q 000979 69 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 144 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv----~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Iv 144 (1202)
...||||||||++||++++ ++|++++|||||+|||..++..+.+.+++... + +++|+.+ |+..+.+.+|+|+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~-~~~ivit--h~~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-E-SQFIVIT--LRDVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T-SEEEEEC--SCHHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-C-CEEEEEE--ecHHHHHhCCEEE
Confidence 4679999999999999996 56799999999999999999999999988653 3 4444443 4467899999998
Q ss_pred Eec--CC
Q 000979 145 LLS--DG 149 (1202)
Q Consensus 145 vL~--~G 149 (1202)
.+. +|
T Consensus 138 ~v~~~~g 144 (173)
T 3kta_B 138 GVSMRDG 144 (173)
T ss_dssp EEEEETT
T ss_pred EEEecCC
Confidence 764 55
No 159
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.38 E-value=3.7e-13 Score=159.78 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=72.4
Q ss_pred cCccccchhhHHHHHhcCC--eEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEe---
Q 000979 72 ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL--- 146 (1202)
Q Consensus 72 LSGGQKqRvsIAraLv~~P--~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL--- 146 (1202)
+||||||||+||++|+.+| +||+|||||+|||..+...+.+.|++++ +++|||++.|.| ++...+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHHhhcCeEEEEEEe
Confidence 6999999999999999999 9999999999999999999999999976 367777776664 778999999999
Q ss_pred -cCCcEEEEcC
Q 000979 147 -SDGQIVYQGP 156 (1202)
Q Consensus 147 -~~G~vvy~G~ 156 (1202)
.+|+++-...
T Consensus 372 ~~~G~~~~~~~ 382 (415)
T 4aby_A 372 VEDGRTVSHVR 382 (415)
T ss_dssp EETTEEEEEEE
T ss_pred ccCCceEEEEE
Confidence 9999877643
No 160
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.38 E-value=4.4e-13 Score=163.05 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 753 VSGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 753 ~~~L-SgGqrqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3457 999999999999999999 99999999999999999999999999987 899999999964 56789999999
Q ss_pred ec
Q 000979 830 KR 831 (1202)
Q Consensus 830 ~~ 831 (1202)
.+
T Consensus 471 ~~ 472 (517)
T 4ad8_A 471 EK 472 (517)
T ss_dssp EC
T ss_pred ec
Confidence 75
No 161
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.4e-14 Score=166.07 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=110.1
Q ss_pred eecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 632 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 632 L~~vs~~i~~Ge~--~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
|+++|+++++|++ ++|+||||||||||+|+|+|.... |.. +... .....++.++|++|++.+++.+||.||
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE----GEP-ATHT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc----CCc-CCCC--CccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 999999999999999999997421 111 1111 112234578999999988888999999
Q ss_pred HHHHHHccCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CCCCCCCCHHHHHHHHHHHHH
Q 000979 710 LLFSAWLRLSPEVDSE--------TRKMFIDEVMELV-ELNP----LRQSL----VG--LPGVSGLSTEQRKRLTIAVEL 770 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~--------~~~~~~~~~l~~l-~l~~----~~~~~----~~--~~~~~~LSgGqrqRv~ia~aL 770 (1202)
+.|+.. .... ..+...++.++.. ++.. ..|.. +. .+..++|+-.+ +.|+++|
T Consensus 103 ~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 103 VGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp ECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 876431 1111 1122334445543 4331 12221 10 11124577776 7899999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 000979 771 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 814 (1202)
Q Consensus 771 ~~~p~illlDEPtsgLD~~~~~~v~~~l~~-~~~~g~tvi~~~H~ 814 (1202)
..+++|+++||||..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999986 77779999888764
No 162
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.36 E-value=2e-14 Score=153.93 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=85.2
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH----HHHHH
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI----YESLL 711 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv----~e~l~ 711 (1202)
.-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|++..++.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 4467899999999999999999999999976532368899998876543 234557899986433322222 11110
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
+ .+. ..+.| +++ +.+++..+++++|| ||+.++
T Consensus 89 ~-----------------------------------~~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 V-----------------------------------FGN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp E-----------------------------------TTE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred H-----------------------------------Hhc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 0 000 00112 222 44566678999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 792 AIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 792 ~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
..+.+.+. ++.||++++|+++
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHHcc----CCEEEEEECCCHH
Confidence 99998875 5899999999865
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.36 E-value=4.8e-12 Score=136.04 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=98.7
Q ss_pred Eeecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
.|+++. +.+++|++++|+||||||||||++.|++ .. + .+. .|+..++.. +. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~-~--~~v-----------------~~i~~~~~~----~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS-G--KKV-----------------AYVDTEGGF----SP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH-C--SEE-----------------EEEESSCCC----CH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc-C--CcE-----------------EEEECCCCC----CH-HH
Confidence 467776 4899999999999999999999999998 21 1 122 233322211 11 11
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 786 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqRv~ia~aL~~~-p~illlDEPtsgL 786 (1202)
+.-.. +. ..... +++++.+.+ ...|++ ++++++.+++++.+ |+++++||||+.+
T Consensus 62 ~~~~~--~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMA--ET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHH--HT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHH--Hh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 11000 00 01111 122222211 123444 36788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCCH------------HHHHhcceEEEEecC
Q 000979 787 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 832 (1202)
Q Consensus 787 D~~~--------~~~v~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~v~~l~~g 832 (1202)
|+.. ...+++.|++++++ |.|||+++|.... .+...+|++++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 24566668887654 8999999997641 467789999999864
No 164
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.34 E-value=3.7e-13 Score=154.11 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=72.6
Q ss_pred cc-ccCccccchhhHHHHHh---------cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHh
Q 000979 69 IR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 138 (1202)
Q Consensus 69 ~~-gLSGGQKqRvsIAraLv---------~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~ 138 (1202)
.+ .+|||||||++||++|+ ++|+||+||||||+||+.....+++.+++.. .|+|+++| +..
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~~---- 332 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LAP---- 332 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CCT----
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-ccc----
Confidence 45 79999999999999999 8999999999999999999999999997742 46666655 432
Q ss_pred hhcceEEecCCcEEEEcCcchH
Q 000979 139 LFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 139 ~fD~IvvL~~G~vvy~G~~~el 160 (1202)
.+|++++|.+|++++.|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8899999999999999998876
No 165
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.34 E-value=1.9e-16 Score=166.53 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 721 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 721 (1202)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...++++|.....+..|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999998732 35678887654221 124566776544445678888776542110000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHH
Q 000979 722 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 793 (1202)
Q Consensus 722 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L--SgGqrqRv~ia~------aL~~~p~illlDEPtsgLD~~~~~~ 793 (1202)
. ..+++.+......+ ..+.+ |+|++|++.++. +++.+|+...+|| +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~------~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAE------ALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHH------HHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHH------HHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 00000000000000 01124 888888888888 9999999888884 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-CCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 794 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 794 v~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
++.++.+.+.+.++|.++|+ ++ ++.+.+|+|+ . +|+++..|+++
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 88888876567899999998 76 5888999998 4 68999999874
No 166
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.33 E-value=4.1e-15 Score=156.47 Aligned_cols=143 Identities=15% Similarity=0.023 Sum_probs=89.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHHHHc
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 716 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~ 716 (1202)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ..++.++|++|+.. +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 477999999999999999999999999843 46889998754221 11234567777543 457888988765422
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 000979 717 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796 (1202)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~ 796 (1202)
....... ..++.+++..++....+. +. ....+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 000000011111111100 00 12359999999999999999999887 68887777777
Q ss_pred HHHHHH
Q 000979 797 TVRNTV 802 (1202)
Q Consensus 797 ~l~~~~ 802 (1202)
.++.+.
T Consensus 143 ~~~~l~ 148 (191)
T 1zp6_A 143 QFADLG 148 (191)
T ss_dssp HTTCCG
T ss_pred HHhccC
Confidence 665543
No 167
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=2.3e-12 Score=146.95 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=71.6
Q ss_pred ccccCccccchhhHHHHHh----cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcce-
Q 000979 69 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI- 143 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv----~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~I- 143 (1202)
...||||||||++||++|+ .+|+||+|||||++||+.+...+.+.+++.+ .++|+|++.|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~--~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHN--KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCC--TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECC--HHHHhhCceEE
Confidence 4689999999999999996 7899999999999999999999999998864 46788887776 4678899987
Q ss_pred -EEecCCc-EEEEcCcchHH
Q 000979 144 -ILLSDGQ-IVYQGPRELVL 161 (1202)
Q Consensus 144 -vvL~~G~-vvy~G~~~el~ 161 (1202)
++|.+|+ .+.....++..
T Consensus 293 ~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp EEEESSSCEEEEECCC----
T ss_pred EEEEeCCEEEEEEEEcchhh
Confidence 7787774 45556655544
No 168
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.30 E-value=4.2e-13 Score=155.57 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=95.6
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceE-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|...+.+.. ...++.+++|+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 567766 79999999999999999999999999654 22 578876665543 23445567787731
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+|+. ...+ +.+|+++|..+|+++++|||| |+.
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1211 0124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+.. ..++. +..|.+|+.|+|+.+ +.+.+||++.|.
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 643 34443 356899999999965 678889987764
No 169
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.4e-13 Score=159.77 Aligned_cols=103 Identities=8% Similarity=-0.016 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCcccccccccCCcccccCccccchhhHHHH--HhcCCeE----eeeeC-CCccccHHHHHHHHHHHHHHh
Q 000979 46 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 46 ~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAra--Lv~~P~I----LlLDE-pTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++.+++.+||.+..+ ..+|||||||||+|||+ |+.+|+| |+||| ||+|||.. ...+.+.++
T Consensus 217 ~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~--- 285 (460)
T 2npi_A 217 NKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE--- 285 (460)
T ss_dssp CBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH---
T ss_pred HHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH---
Confidence 3455778888887665 35899999999999999 9999999 99999 99999998 433333333
Q ss_pred HhCCCEEEEEecCCC--h---HHHhhhcc-----eEEec-CCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPA--P---ETYDLFDD-----IILLS-DGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~--~---s~~~~fD~-----IvvL~-~G~vvy~G~~~el~ 161 (1202)
+.+.|+|+.+|+++ . ...+++|+ |++|. +|+++ .|+++++.
T Consensus 286 -~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 286 -KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp -HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred -HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 34677888889888 3 45588999 99999 99999 99987764
No 170
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.27 E-value=5.7e-13 Score=153.99 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=100.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEee-cCCCCCCCCCHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCE-QNDIHSPFVTIYE 708 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~-q~~~~~~~lTv~e 708 (1202)
+++++|+.+++|++++|+||||||||||+++|+|..++ ..|.|.++|..... ...++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998764 37899999853211 22456788888 54221
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 788 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~ 788 (1202)
+++++..+|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233467778888888999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 789 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 789 ~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455666666443457899999975 57889999999764
No 171
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.26 E-value=1.3e-11 Score=143.62 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 753 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 753 ~~~LSgGqrqRv------~ia~aL~~~-p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
++.||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567899999 99999999999999999999999999874 4579999999974 5788999
Q ss_pred EEEEecCC
Q 000979 826 LFLMKRGG 833 (1202)
Q Consensus 826 v~~l~~gG 833 (1202)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998554
No 172
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.26 E-value=6.9e-15 Score=171.11 Aligned_cols=166 Identities=8% Similarity=0.018 Sum_probs=97.8
Q ss_pred eecceEEEeC--CeEEEEEcCCCCCHHHHHHHHhCCCCCceEE----EEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 632 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 632 L~~vs~~i~~--Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~----G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
.+.|++.+++ |+.++|+||||||||||+++|+|... +.. |.+.+++... ..+...+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~~ 222 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYSD 222 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTTT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChhH
Confidence 5689999999 99999999999999999999999765 335 4444321100 0000011111
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC--CccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC-
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE- 781 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l--~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~illlDE- 781 (1202)
. +++.+... + .......+.+.+-+ .+..++. ...+|+|++||..+++++. .+|++++|||
T Consensus 223 ~-~~I~~~~q---------~-~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQ---------R-YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHH---------H-HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHH---------H-HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 22332210 0 00000000000000 0111111 1235677788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 782 --PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 782 --Pt------sgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
|+ .++|+..+..+.+.|+++.+ .|.++|+++|. + +..+++|++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999988754 48899999975 3 4566677776664
No 173
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.24 E-value=1.7e-15 Score=172.38 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC------ceEEEEEEEcCccCCcc------------------cccceEEEe---e
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 695 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~~~~------------------~~~~~~~~v---~ 695 (1202)
++++|+|+||||||||||.|.|...+ .+..|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999986521 12357888888765321 223345555 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hc-cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000979 696 QNDIHSPFVTIYESLLFSA--WL-RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 772 (1202)
Q Consensus 696 q~~~~~~~lTv~e~l~~~~--~~-~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~ 772 (1202)
|+..+.+..++.||..++. .+ +.-.......+...++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 6655555667766654320 00 00000000000001112233344444433331 589999999999899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888874 5899999999864
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.23 E-value=2.2e-14 Score=157.49 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~---g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
++++++|+||||||||||+++|+ |... +..|++.++|.+.. ....+.+.+++|+..+.+..|+.|++.....-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 8765 45677777665422 112233445677777788889999997643210
Q ss_pred C-----CCCCCHHHHHHHHHHHHHH--cC------------CCccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCEE
Q 000979 718 L-----SPEVDSETRKMFIDEVMEL--VE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSII 777 (1202)
Q Consensus 718 ~-----~~~~~~~~~~~~~~~~l~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL-~~~p~il 777 (1202)
. ........ ..++.+.+. ++ +....++. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 0 00111111 112222211 12 11112222 245898 66 777 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 000979 778 FMD----EPTSGLDARAAAIVMRTVRNTVDTG 805 (1202)
Q Consensus 778 llD----EPtsgLD~~~~~~v~~~l~~~~~~g 805 (1202)
+|| |||++||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999998886543
No 175
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.22 E-value=4.5e-12 Score=144.23 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=84.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc-CccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYESL 710 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 710 (1202)
+++++.. .+|++++|+||||||||||+|+|+|.... +..|+|.++ |.+.. ...++.+++++|+..+++..||+|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 3444443 47999999999999999999999997641 236888876 65432 23456789999998888888998841
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000979 711 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 770 (1202)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL 770 (1202)
+ ...+.++..+.+.++++.+++.+..|... .++| ||+||++||+++
T Consensus 283 -------l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -------L-WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -------C-CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -------h-cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 13445555566788899999987777653 4699 999999999864
No 176
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.20 E-value=1e-11 Score=150.92 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=68.0
Q ss_pred cccc-CccccchhhHHHHHhcCC--eEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE
Q 000979 69 IRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 145 (1202)
Q Consensus 69 ~~gL-SGGQKqRvsIAraLv~~P--~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv 145 (1202)
...| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|++++. ++|||+++|. +++...+|++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~--~~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHL--AQIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCC--HHHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecC--HHHHHhCCEEEE
Confidence 3456 999999999999999999 99999999999999999999999999864 6788877776 457778999999
Q ss_pred ecCC
Q 000979 146 LSDG 149 (1202)
Q Consensus 146 L~~G 149 (1202)
|.+|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
No 177
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.19 E-value=1.2e-11 Score=127.88 Aligned_cols=79 Identities=6% Similarity=-0.034 Sum_probs=64.4
Q ss_pred CcccccCccccchhhHHHH-----HhcCCeEeeeeC--CCccccHHHHHHHHHHHHHHhHhCCCEEEEEec--CCChHHH
Q 000979 67 EMIRGISGGQKKRVTTGEM-----MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETY 137 (1202)
Q Consensus 67 ~~~~gLSGGQKqRvsIAra-----Lv~~P~ILlLDE--pTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaih--Qp~~s~~ 137 (1202)
.....||||||||++||++ +..+|++++||| ||++||..+...+.+.+++ .++|+++++| |....+-
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHH
T ss_pred ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHH
Confidence 4456799999999999996 999999999999 9999999888777777754 5678999998 4555555
Q ss_pred hhhcceEEecCCcEEE
Q 000979 138 DLFDDIILLSDGQIVY 153 (1202)
Q Consensus 138 ~~fD~IvvL~~G~vvy 153 (1202)
+.+|+ .+|++++
T Consensus 148 ~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 148 EIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC----TTCEEEE
T ss_pred HHHhc----CCcEEEE
Confidence 66676 5677766
No 178
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.19 E-value=9.2e-13 Score=154.34 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=101.7
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------c--ccceEEEeecCCCCCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 702 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~--~~~~~~~v~q~~~~~~ 702 (1202)
-+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... . .++.++|++|+..+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3688999999999999999999999999999997542 258899987654321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEe
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 780 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~-illlD 780 (1202)
.+|+++|+.++..-. .+ --+++..|..+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D--------vVLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID--------VLIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC--------EEEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998864211 00 00112222221111 12223357888888764 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 000979 781 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 813 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H 813 (1202)
.||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 588886554 33444433 4889999999
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.18 E-value=1.8e-11 Score=133.67 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=84.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC--CCCC---ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g--~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
+-+++|++++|+||||||||||++.|++ ...+ +...|.+++++.+. . ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 5799999999999999999999999998 3321 01134555554321 0 0101000
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 788 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR-v~ia~aL~--~~p~illlDEPtsgLD~ 788 (1202)
....+ .... +++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11111 1111 112221111 01245554432 33344444 48999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCCHH------------------HHHhcceEEEEecC
Q 000979 789 R-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFEAFDELFLMKRG 832 (1202)
Q Consensus 789 ~-------~-----~~~v~~~l~~~~~~-g~tvi~~~H~~~~~------------------~~~~~d~v~~l~~g 832 (1202)
. . ...+++.|++++++ |.|||+++|..... +...+|++++|.++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 34566666666654 99999999965421 11268999999863
No 180
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.17 E-value=1.2e-13 Score=141.32 Aligned_cols=138 Identities=16% Similarity=0.203 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEEcCccCCc------cccc-ceEE----EeecCCCCCCCCCHHHHH
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQ------ETFA-RISG----YCEQNDIHSPFVTIYESL 710 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~------~~~~-~~~~----~v~q~~~~~~~lTv~e~l 710 (1202)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++.. ..++ +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999996442 2236999999987321 2333 3455 788876544 000
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 000979 711 LFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 782 (1202)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~il-------llDEP 782 (1202)
.+.+ ....++++++. +. -.|+.++. +||||||||++||||++.+|++. .=|.|
T Consensus 77 -----------~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0111 11134556655 43 35777763 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 000979 783 TSG---LDARAAAIVMRTVRNTVDTG 805 (1202)
Q Consensus 783 tsg---LD~~~~~~v~~~l~~~~~~g 805 (1202)
..+ +|......+.+.+.+..++|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33444566777765555554
No 181
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.17 E-value=8.4e-13 Score=133.39 Aligned_cols=79 Identities=24% Similarity=0.104 Sum_probs=64.6
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++++|+++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.++......+ .+++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 346899999999999999999999999999999999976 3 3689999998764221111 2789988888 89999
Q ss_pred HHHHH
Q 000979 708 ESLLF 712 (1202)
Q Consensus 708 e~l~~ 712 (1202)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 182
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.16 E-value=3.1e-11 Score=140.40 Aligned_cols=101 Identities=19% Similarity=0.216 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHhCCcc-------cccccccC----CcccccCccccchh------hHHHHHhcC-CeEeeeeCCCccccH
Q 000979 43 ANVITDYYLKVLGLDV-------CADTMVGD----EMIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDS 104 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~-------~~dT~VG~----~~~~gLSGGQKqRv------sIAraLv~~-P~ILlLDEpTSGLDs 104 (1202)
..+.++.+++.+++.+ ..+..+.+ .....+|||||||+ ++|++|..+ |++|+|||||+|||.
T Consensus 241 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~ 320 (371)
T 3auy_A 241 IQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDE 320 (371)
T ss_dssp HHHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCH
T ss_pred HHHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCH
Confidence 3455677888888876 22333332 22357999999988 567999999 999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEec
Q 000979 105 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 147 (1202)
Q Consensus 105 ~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~ 147 (1202)
.++..+.+.|+++. .+.+|+++.|.| ++...+|++++|.
T Consensus 321 ~~~~~l~~~l~~~~--~~~~vi~~th~~--~~~~~~d~~~~l~ 359 (371)
T 3auy_A 321 NRRAKLAEIFRKVK--SIPQMIIITHHR--ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHHCC--SCSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEEChH--HHHhhCCEEEEEE
Confidence 99999999998853 345788887875 4678999999997
No 183
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.16 E-value=1.9e-11 Score=140.48 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=66.7
Q ss_pred ccccCccccc------hhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcc
Q 000979 69 IRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 142 (1202)
Q Consensus 69 ~~gLSGGQKq------RvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~ 142 (1202)
...||||||| |+++|++|+.+|++|+|||||+|||+.+...+.+.|+++.. .++|++++.|. .++...+|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~--~~~~~~~d~ 322 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD--EELKDAADH 322 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESC--GGGGGGCSE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECh--HHHHHhCCE
Confidence 4679999999 67888999999999999999999999999999999998764 46788887776 467899999
Q ss_pred eEEec
Q 000979 143 IILLS 147 (1202)
Q Consensus 143 IvvL~ 147 (1202)
|++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.15 E-value=1.7e-12 Score=151.41 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=97.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
-+++++++++|+.++|+|+|||||||||++|+|... .+.+.+.. .....++++.+++. ..+++.++.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999998742 12333221 11223455554430 0011111100
Q ss_pred HHHHccCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 712 FSAWLRLSPEVDSETRK--MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+...............+ ++++.++..+++. +.. ...||+|++||+++|++|+.+|.+|++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111000 0112223333332 111 246999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEEecCCCHHHHHhcceEE
Q 000979 790 AAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 790 ~~~~v~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
.+ ..++.+++. .+.|.+++.++......+.++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 76 444444444 34577776655433335666666554
No 185
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.14 E-value=2.2e-11 Score=121.97 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.3
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCC
Q 000979 771 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 816 (1202)
Q Consensus 771 ~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~t-vi~~~H~~~ 816 (1202)
+.+|++|++|||++ +|...+..+.++++++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 56899999999998 6655588899999988777888 888998643
No 186
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.14 E-value=6.7e-11 Score=140.63 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 755 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.+|+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999998865688999999994 5678899999997
Q ss_pred c
Q 000979 831 R 831 (1202)
Q Consensus 831 ~ 831 (1202)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
No 187
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=1.2e-11 Score=128.69 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=42.2
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000979 771 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817 (1202)
Q Consensus 771 ~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~ 817 (1202)
+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999998887789999999998754
No 188
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.10 E-value=4e-12 Score=144.01 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=95.0
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cccc--eEEEeecCCCCCCCCCHHHH
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~--~~~~v~q~~~~~~~lTv~e~ 709 (1202)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+++ .+.+++|+..+.|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 47899999999999999999999999654 2357889988875321 1122 34599999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+.++..... + ..+++..|..+..+. =.++.-.|++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~--d----------~vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGI--D----------VVLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTC--S----------EEEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccc--h----------hhHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-H----
Confidence 987532100 0 001122222221111 1222334889998888888888555 3
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecC
Q 000979 790 AAAIVMRTVRNTVD-TGRTVVCTIHQ 814 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~-~g~tvi~~~H~ 814 (1202)
..+++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 345555666653 48999999995
No 189
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.10 E-value=2.9e-13 Score=154.83 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=103.4
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cccceEEEeecCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHS 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~ 701 (1202)
+.+|+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.+++++|++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3479999999999999999999999999999999996442 247788877664321 2345679999988776
Q ss_pred CCC------------CHHHHHHHHHH-------------------c--------c-CCCCCCHHHHH---HHHHHHHHHc
Q 000979 702 PFV------------TIYESLLFSAW-------------------L--------R-LSPEVDSETRK---MFIDEVMELV 738 (1202)
Q Consensus 702 ~~l------------Tv~e~l~~~~~-------------------~--------~-~~~~~~~~~~~---~~~~~~l~~l 738 (1202)
+.. +++|.+..... + . .... ..++.+ +.+.+....+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-AGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-C------CCTTHHHHCSEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-CcccHHHHHHHHhccccEE
Confidence 532 23333311100 0 0 0000 000000 0011111111
Q ss_pred CCCccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 739 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 739 ~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++.+
T Consensus 199 vl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 11 112211 113579999999999999987 688887 999999999999999987643
No 190
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.09 E-value=4.3e-12 Score=141.56 Aligned_cols=128 Identities=14% Similarity=0.078 Sum_probs=84.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH----
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW---- 715 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~---- 715 (1202)
+++.+++|.||||||||||.+.|++..... |. . ++.+.+|+||+.+++. ++++|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~---------g~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK---------YG-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH---------HG-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc---------CC-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 467899999999999999999999865321 10 1 3445677999988764 88889887621
Q ss_pred cc---CCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCC
Q 000979 716 LR---LSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 716 ~~---~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqRv~ia--~aL~~~p~illlDEPtsgL 786 (1202)
+. .+...+. ....+.++.+.... .....+. ...+.+||||+||+++| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHH----HHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 1222222 22455566554320 0011111 11246999999999997 555 99999999999999
Q ss_pred CHHH
Q 000979 787 DARA 790 (1202)
Q Consensus 787 D~~~ 790 (1202)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9863
No 191
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.01 E-value=1.5e-10 Score=134.61 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=49.3
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCC---------
Q 000979 761 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS--------- 816 (1202)
Q Consensus 761 rqRv~ia~aL~--~~p~illlDEPtsgLD~~~~------------~~v~~~l~~~~~~-g~tvi~~~H~~~--------- 816 (1202)
.+.+.-+.+++ .+|+++++||||+.+|+... ..+++.|++++++ |.|||+++|..+
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 34444444443 46999999999999997533 5678888888765 999999999821
Q ss_pred ---------HHHHHhcceEEEEec
Q 000979 817 ---------IDIFEAFDELFLMKR 831 (1202)
Q Consensus 817 ---------~~~~~~~d~v~~l~~ 831 (1202)
..+...+|.++.|.+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp ---------CHHHHHCSEEEEEEE
T ss_pred CCCccCCchhHHHHhcceEEEEEe
Confidence 124566899999976
No 192
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.99 E-value=1.5e-11 Score=137.22 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=70.1
Q ss_pred HHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEE
Q 000979 47 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 126 (1202)
Q Consensus 47 v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiI 126 (1202)
++..++.+ |++..| | ..|||||||| ||||+++|+||+ ||+||+.++..+.. +
T Consensus 184 ~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l--------- 235 (305)
T 2v9p_A 184 CWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L--------- 235 (305)
T ss_dssp HHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G---------
T ss_pred HHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H---------
Confidence 44566664 666666 3 5799999999 999999999999 99999999877641 1
Q ss_pred EEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhC
Q 000979 127 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 167 (1202)
Q Consensus 127 iaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~l 167 (1202)
.|+.++++.+|+| +|++|++++.|+|+++..+|..+
T Consensus 236 ----tH~~~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 236 ----HSRVQTFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp ----TTTEEEEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred ----hCCHHHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 3778889999999 99999999999999997777664
No 193
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.98 E-value=1.7e-11 Score=138.04 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=80.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE---cCccCCcc--ccc-ceEEEeecCCCCC-----CCCCH
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTI 706 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~--~~~-~~~~~v~q~~~~~-----~~lTv 706 (1202)
.+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ..+ +.+||++|.+.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 765 44789998 88765432 112 2479999998654 67899
Q ss_pred HHHH--HHHH----HccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 000979 707 YESL--LFSA----WLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 769 (1202)
Q Consensus 707 ~e~l--~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~a 769 (1202)
|++ .|.. .++........+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 4431 0111110111122345789999999986 555543 4699999999999873
No 194
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.98 E-value=1.3e-12 Score=156.95 Aligned_cols=177 Identities=11% Similarity=0.024 Sum_probs=103.3
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCC-------
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS------- 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~------- 701 (1202)
..+++++++.+++|+.++|+|||||||||||++|+|..++. .|.|.++|.+.-.......++++.|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 34789999999999999999999999999999999977643 688889886521111233455555543321
Q ss_pred ---------------CCCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCCc---------cccccccCCCCCCC
Q 000979 702 ---------------PFVTIYESLLFSAWLRLSPE-VDSETRKMFIDEVMELVELNP---------LRQSLVGLPGVSGL 756 (1202)
Q Consensus 702 ---------------~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~~~~L 756 (1202)
..++..|++.+......... .+.- ....++++++.+.... ..+..+. ....+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEE
Confidence 23444444332211110000 0000 0000123333332211 0110000 11247
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCCHHHHHhc
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 823 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~ 823 (1202)
|+|||||.+++. + | |+|||+.....+++.|.++.++|+|+++ ++|+++ ++...+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 999999877641 1 7 9999998887777777777666888875 889765 444444
No 195
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.97 E-value=1.2e-10 Score=119.82 Aligned_cols=69 Identities=12% Similarity=-0.036 Sum_probs=54.6
Q ss_pred ccCccccchhhHHHHHhcCCeEeeeeCCCccccHH----------------HHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 71 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~----------------sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
..|||||||++|||++..+|++|+|||||+|||.. ....+.+.++++.++ |+|+|+++| ..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH--~~ 159 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN--SP 159 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC--SH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC--CH
Confidence 46999999999999999999999999999999999 557888888777655 666665554 44
Q ss_pred HHHhhhcc
Q 000979 135 ETYDLFDD 142 (1202)
Q Consensus 135 s~~~~fD~ 142 (1202)
+....+++
T Consensus 160 ~~~~~~~~ 167 (171)
T 4gp7_A 160 EEVEEVVF 167 (171)
T ss_dssp HHHHHEEE
T ss_pred HHhhhhhh
Confidence 45444443
No 196
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.97 E-value=2.8e-10 Score=135.19 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=65.2
Q ss_pred cccCccccchhhHHHHHh----cCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE
Q 000979 70 RGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 145 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraLv----~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv 145 (1202)
..||||||||++||++|+ ++|++|+|||||++||..+...+.+.+++... .++++|++.|+ ..+...+|++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEE
Confidence 359999999999999998 68999999999999999999999999988643 35677777665 578899999999
Q ss_pred ec
Q 000979 146 LS 147 (1202)
Q Consensus 146 L~ 147 (1202)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 197
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.94 E-value=3.5e-12 Score=135.98 Aligned_cols=148 Identities=13% Similarity=0.076 Sum_probs=79.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
.++|++++|+||||||||||+++|+|...+ |+..|.|.++|..... +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhcccccCC
Confidence 578999999999999999999999996542 2224555555443221 1111110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 000979 718 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 796 (1202)
Q Consensus 718 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia-~aL~~~p~illlDEPtsgLD~~~~~~v~~ 796 (1202)
.+...+... ..+.++.+...+..+....+.+ ..+|+||+||++++ ++++.++.++++|||.. .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 000111111 1222222211111122222222 35899999999998 88888888888888841 1
Q ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 797 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 797 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
.++ +.--.++++.+..+..+...+.|
T Consensus 143 ~l~---~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLT---AIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGG---GTCSEEEEECCCHHHHHHHHHHH
T ss_pred HHH---HhcCEEEEEeCCHHHHHHHHHHH
Confidence 111 22236777777755434555555
No 198
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=6.3e-10 Score=128.80 Aligned_cols=163 Identities=14% Similarity=0.000 Sum_probs=83.5
Q ss_pred EEEEcCCCCCHHHHHHHHhC-CCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 722 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 722 (1202)
+.|.||||+|||||+++|++ ...+ ..|.+.++|.+... ...+..+++++|.+.+.-..+ + ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCc
Confidence 89999999999999999999 3332 25777887765432 122455678887654311110 0 0000
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000979 723 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802 (1202)
Q Consensus 723 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 802 (1202)
... .+++.++.+......+... .||| +..+|+++++|||++ ||+.+...+.+.|.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333322111111110 3566 788999999999999 99999999999998763
Q ss_pred hCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHh
Q 000979 803 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 853 (1202)
Q Consensus 803 ~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~ 853 (1202)
.+.++|+++|+++.-.-.+.+| ...+.+.++.. +++..+..
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHH
Confidence 4789999999986311122222 34556666653 33444443
No 199
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.91 E-value=1e-12 Score=151.69 Aligned_cols=171 Identities=11% Similarity=0.089 Sum_probs=116.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC----------CCceEEEEEEEcCccCCc----ccccce---EEEeecCCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNITISGYPKKQ----ETFARI---SGYCEQNDIH 700 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~----------~~~~~~G~i~~~g~~~~~----~~~~~~---~~~v~q~~~~ 700 (1202)
.+++|+.++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 112457999998843211 011222 2467788888
Q ss_pred CCCCCHHHHH--HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CE
Q 000979 701 SPFVTIYESL--LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 776 (1202)
Q Consensus 701 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p--~i 776 (1202)
.+..+..|++ .|.+.++. ++.++..++..+ +. .+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7777766655 44333321 111111222211 11 122356543 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCCHHHHHhcceEE-EEecCC-EEEEEcCCCc
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-QEIYVGPLGR 843 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~-~l~~gG-~~~~~G~~~~ 843 (1202)
+++|||+.++|+......++.+++. .+.|.|++ +|... ++.+.||++. +|. .| +.++.|+..+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCCH
Confidence 9999999999999999999999988 66677764 99875 6788999999 887 47 8888777653
No 200
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.90 E-value=1.7e-12 Score=151.66 Aligned_cols=134 Identities=14% Similarity=0.018 Sum_probs=88.8
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEee------
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------ 695 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~------ 695 (1202)
..+|+++ +. ++|++++|+|||||||||||++|+|...+ ..|+|.+.+.++.. ...++.+++.+
T Consensus 156 ~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3467887 53 89999999999999999999999996542 25788888776531 11223344544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 696 ---QNDIH--SPF----VTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 696 ---q~~~~--~~~----lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
|++.. ++. .|+.+++.++..-.. ....+.. ..+ +.+..+++.+.. . ...|||||+|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~~i-~rL~~lgl~~~~--~-----~~~LSgg~~Q 300 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---GAV-TRLRDMGIEPFL--I-----SSSLLGVLAQ 300 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---HHH-HHHHHHTCCHHH--H-----HHHEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---HHH-HHHHHcCCcHHH--H-----HHHHHHHHHH
Confidence 87654 233 589999887642110 0111111 122 345667876542 2 2469999999
Q ss_pred HHHHHHHHhhCCCEEEE
Q 000979 763 RLTIAVELVANPSIIFM 779 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illl 779 (1202)
| |||+|+.+|++..-
T Consensus 301 R--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPYE 315 (418)
T ss_dssp E--EEEEECTTTCEEEE
T ss_pred H--hhhhhcCCCCccCC
Confidence 9 99999999998763
No 201
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.87 E-value=4.7e-10 Score=118.73 Aligned_cols=52 Identities=12% Similarity=-0.109 Sum_probs=44.4
Q ss_pred cccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 75 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 75 GQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
|||||++|||||+.+|+||+||||||| +...+++.|+++ ..++||| +.|.+.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l--~~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL--GFGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB--CTTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh--cCCCEEE-EECCHH
Confidence 999999999999999999999999999 777899999876 3578888 666544
No 202
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.80 E-value=3.3e-13 Score=142.60 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.6
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 766 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 766 ia~-aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+++ +++.+|++++|||||+++|..+...+.+.|.+..+. +...|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888888999999999999999999999877543 2334621 5689887765
No 203
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.79 E-value=2.9e-10 Score=127.01 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=67.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE---cCccCCcc-cccce-EEEeecCCCCCC----CCCHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTIY 707 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~-~~~~~-~~~v~q~~~~~~----~lTv~ 707 (1202)
+++.+|++++|+||||+|||||+|+|+|... +..|+|.+ +|...... ...+. .+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999765 45789988 77654321 12222 699999987765 6799
Q ss_pred HHHH--HHH------HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 708 ESLL--FSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 708 e~l~--~~~------~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
|++. |.. .++........+....++++++.+++.+.+.... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 331 1121110111112334789999999976433221 2477787763
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.76 E-value=5.9e-11 Score=136.12 Aligned_cols=151 Identities=15% Similarity=0.053 Sum_probs=93.2
Q ss_pred eEEeecceEEEeCC-------eEEEEEcCCCCCHHHHHHHHhCCCCC--ceEEEEEEEcCccCCc---ccccceEEEeec
Q 000979 629 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQ 696 (1202)
Q Consensus 629 ~~iL~~vs~~i~~G-------e~~al~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~---~~~~~~~~~v~q 696 (1202)
..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.+... ...++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34688888888876 89999999999999999999985421 1345555544443221 112456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000979 697 NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 775 (1202)
Q Consensus 697 ~~~~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 775 (1202)
.+.+.+ ++.|++..........- .......+.++..++.+++.. .++. ...||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE--------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce--------
Confidence 877765 78888754332211000 001111223444445455544 3333 246999999998654
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
.+||+.+...+.+.|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 78888889999999988764
No 205
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.74 E-value=7.2e-12 Score=139.20 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=84.3
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFV 704 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~l 704 (1202)
..+++++++.+++| ++|+||||||||||+++|+|.... +.+.++|.+.... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 34789999999999 999999999999999999997542 5788998765321 1223456666653 344555
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 705 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
++.|++......+ .... .+ ......+.. ...|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r-----~~~~----~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRR-----SDRE----TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred Eeeehhhhhhccc-----CCCc----ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 5555554321100 0000 00 011222222 2359999999999999999999986 88753
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.71 E-value=1.2e-09 Score=119.50 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=44.5
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHH-------HHHhcceEEEEec
Q 000979 772 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFEAFDELFLMKR 831 (1202)
Q Consensus 772 ~~p~illlDEPtsgL--D~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~d~v~~l~~ 831 (1202)
.+|+++++|||++.+ |+......+..|.+++ +.|.|||+++|..... +.+.+|.++.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5544555555565554 5689999999986531 4577899999975
No 207
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.67 E-value=2.2e-10 Score=129.52 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=71.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEE-------------------eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|
T Consensus 38 i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 38 LSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56677775551 2578888877 8999999999999999999999999
Q ss_pred CCCCceEEEEEEE---cCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHcc
Q 000979 665 RKTGGYITGNITI---SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 717 (1202)
Q Consensus 665 ~~~~~~~~G~i~~---~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 717 (1202)
.....+.+|+|.+ +|..... ..++.++++ |...+++.+|+.+++.+...++
T Consensus 103 ~l~~~~~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWPEHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTSTTCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCCCCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 5430012578888 8876432 223456788 7777778899999998766543
No 208
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.65 E-value=3.6e-09 Score=119.11 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=65.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE---cCccCCccc--c-cceEEEeecCCC-----------
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI----------- 699 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~--~-~~~~~~v~q~~~----------- 699 (1202)
+++.+|++++|+||||||||||||+|+|... +.+|+|.+ +|.+..... . .+.+|||+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456799999999999999999999999876 45899999 887654311 1 134799999975
Q ss_pred -----CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 000979 700 -----HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSL 747 (1202)
Q Consensus 700 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~ 747 (1202)
++|.+|+ ||+.|.. +... .+.+.+++++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~~~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CNHV-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CCSS-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-CcCC-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788899 9888752 1111 11234578999999995 555544
No 209
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.64 E-value=9.9e-08 Score=113.91 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=105.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEE-EEEEcCccCCccccc-ceEEEeecCCCCCCCCCHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFA-RISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~-~~~~~v~q~~~~~~~lTv~e 708 (1202)
.|+++.+-+++|+++.|.|+||+|||||+..+++..... .| .+.+.+......... +..+.... ... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 488888889999999999999999999999998742210 01 222222211111000 00000000 000 0
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL 786 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~--~~p~illlDEPtsgL 786 (1202)
. ++. ...+.++ ..++.+.++.++..+..-. . ..++|.+|.+ +.++.++ .+|+++++|+++...
T Consensus 262 ~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRT-GKLTPED-WGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 111 1223332 2334555555543332211 1 1358999986 5677776 689999999999977
Q ss_pred CH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--CCH-------HHHHhcceEEEEecC
Q 000979 787 DA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRG 832 (1202)
Q Consensus 787 D~--------~~~~~v~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~v~~l~~g 832 (1202)
++ .....+.+.|++++++ |.+||+++| + |.. .+...+|.+++|.++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 42 3346777788888755 899999999 2 421 366789999999864
No 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.63 E-value=8.9e-09 Score=115.37 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=74.3
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 713 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 713 (1202)
.+++..++|++++|+|||||||||+++.|++.... ..|+|.+.+.+.... ...|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHHH----
Confidence 34566789999999999999999999999986431 124455544332100 00111
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000979 714 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARA 790 (1202)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv---~ia~aL~~~p~illlDEPtsgLD~~~ 790 (1202)
...+.+..++.. ....|+|+.+++ +|++++..+|+++++|||.. ...
T Consensus 151 -----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~ 200 (306)
T 1vma_A 151 -----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHT 200 (306)
T ss_dssp -----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSC
T ss_pred -----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhh
Confidence 123334445532 124689999999 99999999999999999974 334
Q ss_pred HHHHHHHHHHH
Q 000979 791 AAIVMRTVRNT 801 (1202)
Q Consensus 791 ~~~v~~~l~~~ 801 (1202)
...+++.|+++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 211
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.57 E-value=7e-08 Score=107.98 Aligned_cols=118 Identities=20% Similarity=0.117 Sum_probs=79.2
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHH
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 712 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 712 (1202)
++++++ +|++++++|+||+||||++..|++.... ..|++.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHh------------------HH-HHH--
Confidence 678888 9999999999999999999999996431 1356666554432100 00 100
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 000979 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 791 (1202)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP-tsgLD~~~~ 791 (1202)
..+.+..++..... + .+-...+.+|.+|+++...+++++++||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 11344566789999998899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 000979 792 AIVMRTVRNT 801 (1202)
Q Consensus 792 ~~v~~~l~~~ 801 (1202)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887777654
No 212
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.54 E-value=1.1e-07 Score=108.92 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCCH-----
Q 000979 762 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 817 (1202)
Q Consensus 762 qRv~ia~aL~~~--p~illlDEPtsgL----------D~---~~~~~v~~~l~~~----~~~g~tvi~~~H~~~~----- 817 (1202)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ .+.|.|||+++|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 346678888765 9999999999998 33 2233445555554 3459999999996431
Q ss_pred ----------HHHHhcceEEEEecCCEEEEEcC
Q 000979 818 ----------DIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 818 ----------~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14567898888875 45554454
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.54 E-value=9.8e-09 Score=119.35 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=73.4
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCcc--ccchhhHHHHHhc----------CCeEeeeeCCCccccHHHHHHHHH
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVN 112 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGG--QKqRvsIAraLv~----------~P~ILlLDEpTSGLDs~sa~~vv~ 112 (1202)
..++++++.++|.+. +..+ . |||| ||||++||++|.+ +|++++|||||+|||+.++.++++
T Consensus 135 ~~~~~~L~~~~L~~~-~~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEY-DFFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGC-SEEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc-CCeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 457889999999875 3332 2 9999 9999999999999 999999999999999999999999
Q ss_pred HHHHHhH----hC----CCEEEEEecCCCh-HHHhhhcceE
Q 000979 113 CLRQNIH----IN----SGTAVISLLQPAP-ETYDLFDDII 144 (1202)
Q Consensus 113 ~L~~~a~----~~----~tTiIiaihQp~~-s~~~~fD~Iv 144 (1202)
.+++... +. .++++++.|.... .+-++.|+|.
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9988742 22 3667788776553 3555666663
No 214
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.53 E-value=1.3e-09 Score=129.58 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=92.5
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhC--CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCC--CCCHHHH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP--FVTIYES 709 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g--~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~--~lTv~e~ 709 (1202)
.+++.+.++..++|.|++||||||+|+.|.. ..... .+++.+.+.+.+...+.. | ..-+.+.. ...+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 3677788899999999999999999999865 12111 133333333332211110 0 00011100 0112221
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEE
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-IIF 778 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv----------~ia~aL~~~p~-ill 778 (1202)
...-.++ .++.+++ .+.++..|+.+..+..... ...+|+||+||. .+++++...|. +++
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 1111111 1233333 3677888877654321000 024788887652 35666777898 799
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCCC
Q 000979 779 MDEPTSGLDARAAAIVMRTVRNTVDT----GRTVVCTIHQPS 816 (1202)
Q Consensus 779 lDEPtsgLD~~~~~~v~~~l~~~~~~----g~tvi~~~H~~~ 816 (1202)
+||++.-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999998843 34555666655433 779999999997
No 215
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.47 E-value=2.2e-08 Score=104.89 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 800 (1202)
++..+|++|+.+|+++++| ||++|......+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999988865
No 216
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.46 E-value=7.4e-08 Score=122.73 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=73.4
Q ss_pred ccccCccccchhhHHHHH--hcCCeEeeeeCCCccccHHHHHHH-HHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE
Q 000979 69 IRGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 145 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraL--v~~P~ILlLDEpTSGLDs~sa~~v-v~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv 145 (1202)
.+++|+|++++..+|+++ +.+|++++|||||+|||+.....+ +..++.+....+.|+++++|.| +..+++|++..
T Consensus 719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~ 796 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPT 796 (934)
T ss_dssp ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTT
T ss_pred HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccce
Confidence 467999999999999888 899999999999999999888888 4555555544588888888874 56689999999
Q ss_pred ecCCcEEEEcCcchHH
Q 000979 146 LSDGQIVYQGPRELVL 161 (1202)
Q Consensus 146 L~~G~vvy~G~~~el~ 161 (1202)
+.+|++.+.|+.+++.
T Consensus 797 v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 797 VNNLHVTALTTEETLT 812 (934)
T ss_dssp EEEEEEEEEEETTEEE
T ss_pred eEeeEEEEEecCCcEE
Confidence 9999999999877654
No 217
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.43 E-value=1.1e-07 Score=106.33 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=84.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 719 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~ 719 (1202)
++|++++++||||+||||+++.|++..... .| +.+.++.+|.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999864310 12 23566666542 235555554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 000979 720 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 799 (1202)
Q Consensus 720 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~ 799 (1202)
+..++... ...+. +.-+.+|++ +.+|+++++| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222110 01122 333555554 5999999999 99999877655555443
Q ss_pred HHH---hCCCEEEE-EecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 800 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 800 ~~~---~~g~tvi~-~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
-+. ..+.++++ ++|... ++.+.++++..+.. +.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEe
Confidence 332 12334444 377653 56677777665554 456654
No 218
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.43 E-value=1.8e-10 Score=128.56 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=79.1
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCC-CCCCCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFVT 705 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~lT 705 (1202)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4689999999999 99999999999999999999654 4577787765321 111233456666643 456677
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 706 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+.|++......+... ....++.++.+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 777774332111100 001112222222222 24899999999999999999876
No 219
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.42 E-value=1.2e-08 Score=108.15 Aligned_cols=60 Identities=25% Similarity=0.193 Sum_probs=39.5
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCC
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 701 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~ 701 (1202)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 56788999999999999999999999999743 23444433221 11244567888865443
No 220
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.41 E-value=8e-08 Score=109.28 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=55.6
Q ss_pred ccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcE
Q 000979 74 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 151 (1202)
Q Consensus 74 GGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~v 151 (1202)
||||||++||+||..+|++++|||||+. ++++.++.+. .+++|+++++|.++ +.+.+|+|++|.+|+.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 8999999999999999999999999982 3556666543 45567777777655 8889999999998864
No 221
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.40 E-value=2.5e-10 Score=125.68 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=78.1
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFVT 705 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~lT 705 (1202)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|.. ...+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4689999999999 99999999999999999998654 35677777543211 1123345566653 2455667
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 706 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+.|++......+... ....++.++.+++++ ..|||||+||+.|++++..+|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 777774322111100 001122222233332 24889999999999999999986
No 222
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.38 E-value=3.1e-08 Score=116.94 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=44.7
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+|+|+|+++++ |+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 69999999999 9999999999999999999999765 34689999998754
No 223
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.38 E-value=5.2e-09 Score=129.56 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=97.3
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++++++.... .+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~----~~ 117 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGR----RI 117 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHH----HH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHH----HH
Confidence 4456789999999999999999999999999999999975432 23778887766532 34567888774210 01
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHH-------------------------HHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMF-------------------------IDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.|...-.+....... +.+... ....-+.+|..+..... ..++|+|++
T Consensus 118 ~e~~~~~~~~~~~~r---~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~ 189 (604)
T 3k1j_A 118 VEKYREKAKSQESVK---SSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ-----SGGLGTPAH 189 (604)
T ss_dssp HHHHHHHHHHHTCC--------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGG
T ss_pred HHHHHHhhccchhhh---hhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh-----cCCcccccc
Confidence 111111110000000 000000 00011112211111111 136999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 800 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 800 (1202)
|++..++....++.+|||||... |++.....+.+.|.+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999988 898888888777764
No 224
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.21 E-value=8.4e-07 Score=99.68 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=61.7
Q ss_pred ccCccc-cchhhHHHHHhcCCeEeeeeCCCc---c---ccH-HHHHHHHHHHHHHhHhCCCEEEEEecCCC-h-------
Q 000979 71 GISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQPA-P------- 134 (1202)
Q Consensus 71 gLSGGQ-KqRvsIAraLv~~P~ILlLDEpTS---G---LDs-~sa~~vv~~L~~~a~~~~tTiIiaihQp~-~------- 134 (1202)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|++++++.+.|||++.|..+ .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 477788 77777 999999999999999999 5 455 56678999999998777899999888763 3
Q ss_pred -------------HHHhhhcceEEecCCcE
Q 000979 135 -------------ETYDLFDDIILLSDGQI 151 (1202)
Q Consensus 135 -------------s~~~~fD~IvvL~~G~v 151 (1202)
++.+.+|+|++|.+|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998875
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.19 E-value=1.9e-06 Score=102.15 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCC
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 816 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEP----------tsgLD~~~~~~v~~~l~~~~----~~g~tvi~~~H~~~ 816 (1202)
|++++|-.+++|....|.|||+||+ +.|.|......+.++|..+- ..+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777776653 24678999999874
No 226
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.14 E-value=1.1e-06 Score=92.48 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 802 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 802 (1202)
...|++|+.+|+++++| ||++|......+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887643
No 227
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.11 E-value=8.8e-07 Score=100.88 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.0
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|+.+- +-+++|+++.|.||||||||||+..+++.
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 47999999999999999999999999874
No 228
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.11 E-value=7.4e-07 Score=96.20 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh-CCCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 667 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~-g~~~ 667 (1202)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999 9754
No 229
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.07 E-value=3.3e-06 Score=106.84 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCCHHHHHhcceEEEEec
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~v~~l~~ 831 (1202)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++++++ ||++. .+.+.+++..++.-
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v 267 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAV 267 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEEC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcccc
Confidence 3489999999999999999999999999996 999887777776666554445778885 88764 56677775444433
Q ss_pred CC
Q 000979 832 GG 833 (1202)
Q Consensus 832 gG 833 (1202)
.|
T Consensus 268 ~g 269 (773)
T 2xau_A 268 PG 269 (773)
T ss_dssp CC
T ss_pred cC
Confidence 34
No 230
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.04 E-value=5.8e-06 Score=95.11 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC---------ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH---HHH
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE---SLL 711 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e---~l~ 711 (1202)
.++|+|++|||||||+|.|+|.... ++..|.+.++|.+.. +....|++.+.+ ...|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 4999999999999999999996431 134688888875431 122234444321 111211 111
Q ss_pred HHH--H--cc-CC-CCCC--HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCEEE
Q 000979 712 FSA--W--LR-LS-PEVD--SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANPSIIF 778 (1202)
Q Consensus 712 ~~~--~--~~-~~-~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia----~aL-~~~p~ill 778 (1202)
... . +. .. .... ..+..+.+.++++.+++.+..--.+.+. ...+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 000 0 00 00 1111 1222334567777777654431112221 234788888888887 555 334444
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 779 MDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 779 lDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
+|+|++|......+.+.|.+...
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
No 231
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.02 E-value=2.3e-07 Score=97.73 Aligned_cols=56 Identities=23% Similarity=0.166 Sum_probs=37.2
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc--cccceEEEeecC
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQN 697 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~ 697 (1202)
....++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...++++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3566789999999999999999999999864 5677887664321 111234566664
No 232
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.96 E-value=1.5e-07 Score=100.49 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=38.3
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-----------ccccceEEEeecC
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 697 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------~~~~~~~~~v~q~ 697 (1202)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999996552 35778887765411 1134567888874
No 233
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.96 E-value=1.3e-07 Score=101.23 Aligned_cols=83 Identities=12% Similarity=-0.050 Sum_probs=62.0
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhH-----HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsI-----AraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
..++++++... +..++ ..+|||||||++| +++++++|++++|||||+++|..++..+.+.+++...
T Consensus 105 ~~i~~~l~~~~-----~~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 105 SEYDKAKEQNK-----ICLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHTTC-----EEEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-----cEEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34566666533 22332 5699999999999 8999999999999999999999999999999987542
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEec
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLS 147 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~ 147 (1202)
. .| ++ | ...||.|++++
T Consensus 176 -~-~~--~~---h----~~~~d~iiv~~ 192 (218)
T 1z6g_A 176 -E-LH--EA---N----LLNFNLSIIND 192 (218)
T ss_dssp -H-HH--HH---T----TSCCSEEEECS
T ss_pred -H-HH--hh---c----ccCCCEEEECC
Confidence 2 22 22 2 36678887765
No 234
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.94 E-value=4.9e-06 Score=105.81 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=62.7
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHH-HHHHHHhHhCCCEEEEEecCCChHHHhhhcceEE-e
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-L 146 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv-~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Ivv-L 146 (1202)
...+|+|++|+..|+++ +.+|++++|||||+|||+.....+. ..++.+++..+.|+++++|.+ +..+++|+.-- +
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v 809 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV 809 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence 35689999999999998 8899999999999999999888887 555555554688999998876 45567776531 3
Q ss_pred cCCcEEE
Q 000979 147 SDGQIVY 153 (1202)
Q Consensus 147 ~~G~vvy 153 (1202)
.++++.+
T Consensus 810 ~n~~~~~ 816 (918)
T 3thx_B 810 GNYHMGF 816 (918)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4445444
No 235
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.92 E-value=1e-05 Score=91.44 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=81.2
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
|+.+..-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.-+ ++..+-.
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSlE------ms~~ql~- 90 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSLE------MSAEQLA- 90 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEESS------SCHHHHH-
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeCC------CCHHHHH-
Confidence 7777778999999999999999999999888753210 11 123444321 2322211
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
.++......+++.+..+ ..||.+|++|++.|...+.++++.+.|+|...+
T Consensus 91 -----------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si----- 140 (338)
T 4a1f_A 91 -----------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI----- 140 (338)
T ss_dssp -----------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----
T ss_pred -----------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----
Confidence 11111112222222211 149999999999999999999999999986543
Q ss_pred HHHHHHHHHHHhC--CCEEEEEec
Q 000979 792 AIVMRTVRNTVDT--GRTVVCTIH 813 (1202)
Q Consensus 792 ~~v~~~l~~~~~~--g~tvi~~~H 813 (1202)
..+...++++.++ |..+|++-|
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEec
Confidence 3566666666543 567777755
No 236
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.92 E-value=4.7e-06 Score=107.73 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=63.1
Q ss_pred cccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHH-HHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecC
Q 000979 70 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 148 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa-~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~ 148 (1202)
..+|+|++ ++++|++++++|++++|||||+|+|+... ..+++.++.++...+.|+++++|.|. .+...+|++.|+ +
T Consensus 850 stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~ 926 (1022)
T 2o8b_B 850 STFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-L 926 (1022)
T ss_dssp CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-E
T ss_pred hhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-c
Confidence 34666655 59999999999999999999999999874 44677777776544788888888664 455678999887 5
Q ss_pred CcEE--EEcCcch
Q 000979 149 GQIV--YQGPREL 159 (1202)
Q Consensus 149 G~vv--y~G~~~e 159 (1202)
|++. +.|+.++
T Consensus 927 g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 927 GHMACMVENECED 939 (1022)
T ss_dssp EEEEEC-------
T ss_pred CeEEEEEecCccc
Confidence 8888 6676544
No 237
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.90 E-value=7e-06 Score=91.24 Aligned_cols=80 Identities=5% Similarity=-0.055 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCc--cccHHHH---HHHHHHHHHHhHh
Q 000979 46 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHI 120 (1202)
Q Consensus 46 ~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTS--GLDs~sa---~~vv~~L~~~a~~ 120 (1202)
.++.+++.+++.+..+..+ ..+|+||++|+ ++++.+|+++++||||+ ++|..+. .++++.|++++++
T Consensus 98 ~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 98 ERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp HHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 3566788888887665443 46999997765 68889999999999999 9997443 7888999998876
Q ss_pred CCCEEEEEecCCC
Q 000979 121 NSGTAVISLLQPA 133 (1202)
Q Consensus 121 ~~tTiIiaihQp~ 133 (1202)
.++|||++.|...
T Consensus 170 ~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 170 TGCSIVFLHHASK 182 (279)
T ss_dssp HCCEEEEEEEC--
T ss_pred cCCEEEEEecCCC
Confidence 7888888877654
No 238
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.89 E-value=9e-07 Score=96.14 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=35.1
Q ss_pred eeEEeee-EEEEecCchhhhcccccCceEEeecceEEEeC---CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 603 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 603 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|+ +++|. +...+|+|+|+++++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4788898 88772 123579999999999 9999999999999999999999753
No 239
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.87 E-value=7.1e-06 Score=88.20 Aligned_cols=79 Identities=11% Similarity=-0.027 Sum_probs=64.4
Q ss_pred ccCccccchhhHHHHHhcCCe--EeeeeCCCccc--cHHHHHHHHHHHHHHhHhCCCEEEEEecCCC-------hHHHhh
Q 000979 71 GISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA-------PETYDL 139 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~--ILlLDEpTSGL--Ds~sa~~vv~~L~~~a~~~~tTiIiaihQp~-------~s~~~~ 139 (1202)
..|++|+++...+.+...+|+ ++++||||+++ |.....++++.|++++++.+.||+++.|..+ ..+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 348899888877777777999 99999999988 9988889999999988777889988888764 457888
Q ss_pred hcceEEecCC
Q 000979 140 FDDIILLSDG 149 (1202)
Q Consensus 140 fD~IvvL~~G 149 (1202)
+|+|++|.+.
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
No 240
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.87 E-value=3.1e-06 Score=93.30 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=45.1
Q ss_pred cccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEec
Q 000979 57 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 130 (1202)
Q Consensus 57 ~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaih 130 (1202)
.+..+... ..||||||||++|||+++. +++|||||+|||+.. .++++.|+ . . .++|+.+|
T Consensus 89 ~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~---~-~-~~vI~Vi~ 148 (270)
T 3sop_A 89 EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLS---K-V-VNIIPVIA 148 (270)
T ss_dssp HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHH---T-T-SEEEEEET
T ss_pred HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHH---h-c-CcEEEEEe
Confidence 45555555 3799999999999999875 999999999999965 34444443 2 3 67777655
No 241
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.86 E-value=2e-05 Score=90.72 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 816 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlD-EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~--H~~~ 816 (1202)
..+|+||+|++. +.+...++-++++| +|++++|......+.+.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55555677789999 99999999988888887776543 77888888 7754
No 242
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.85 E-value=1.5e-06 Score=90.36 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=60.2
Q ss_pred ccccCCcccccCccccchh-hHHH---HHhcCCeEeeeeC--CCccccHHHHHHHHHHHHHHhHhCCCEEEE---EecCC
Q 000979 62 TMVGDEMIRGISGGQKKRV-TTGE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVI---SLLQP 132 (1202)
Q Consensus 62 T~VG~~~~~gLSGGQKqRv-sIAr---aLv~~P~ILlLDE--pTSGLDs~sa~~vv~~L~~~a~~~~tTiIi---aihQp 132 (1202)
..|| +.+..+|||||+++ ++++ |+..+|+||+||| ||..+|... ++.++++.. ...++|+ ++.|.
T Consensus 75 ~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~-~~~~~ilgti~vsh~ 148 (189)
T 2i3b_A 75 CRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLS-TPGTIILGTIPVPKG 148 (189)
T ss_dssp EESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHH-CSSCCEEEECCCCCS
T ss_pred cccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHh-CCCcEEEEEeecCCC
Confidence 3666 45667999999998 4555 6899999999999 788888854 455555443 3344443 33233
Q ss_pred ChHHHhhhcceEEecCCcEEEEc
Q 000979 133 APETYDLFDDIILLSDGQIVYQG 155 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G 155 (1202)
+ + ....|+|..+.+|++++-.
T Consensus 149 ~-~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 149 K-P-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp S-C-CTTHHHHHTTCCSEEEECC
T ss_pred C-c-hHHHHHHeecCCcEEEEeC
Confidence 3 2 4577999999999998864
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.83 E-value=2.3e-05 Score=83.35 Aligned_cols=79 Identities=10% Similarity=-0.027 Sum_probs=61.2
Q ss_pred ccCccc--cchhhHHHHHhcC-CeEeeeeCCCccccHHH--------HHHHHHHHHHHhHhCCCEEEEEecCCCh-----
Q 000979 71 GISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSST--------TFQIVNCLRQNIHINSGTAVISLLQPAP----- 134 (1202)
Q Consensus 71 gLSGGQ--KqRvsIAraLv~~-P~ILlLDEpTSGLDs~s--------a~~vv~~L~~~a~~~~tTiIiaihQp~~----- 134 (1202)
..|+++ +++++.+++++.+ |+++++||||++||... -.++++.|++++++.+.|++++.|..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 356665 5678888999986 99999999999999733 2456777888887778888887776542
Q ss_pred -------HHHhhhcceEEecCC
Q 000979 135 -------ETYDLFDDIILLSDG 149 (1202)
Q Consensus 135 -------s~~~~fD~IvvL~~G 149 (1202)
.+...+|++++|.+.
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567889999999754
No 244
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.81 E-value=9.9e-06 Score=90.64 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=60.0
Q ss_pred HHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCe--EeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEE
Q 000979 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127 (1202)
Q Consensus 50 il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~--ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIi 127 (1202)
+++.+|+.+..+..++ .|| |||++|||+|+.+|+ +|+|| ||+|||+.+.. ++.....+.|+++
T Consensus 188 lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii 252 (302)
T 3b9q_A 188 LCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI 252 (302)
T ss_dssp EECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE
T ss_pred HHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE
Confidence 4556677766666653 699 999999999999999 99999 99999997542 3333334667777
Q ss_pred EecCCC-------hHHH-hhhcceEEecCCcE
Q 000979 128 SLLQPA-------PETY-DLFDDIILLSDGQI 151 (1202)
Q Consensus 128 aihQp~-------~s~~-~~fD~IvvL~~G~v 151 (1202)
.+|-.. .++. +..+.|..+..|+.
T Consensus 253 iThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 253 LTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 666221 1222 33456777777765
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.81 E-value=5.7e-07 Score=95.30 Aligned_cols=80 Identities=8% Similarity=0.018 Sum_probs=62.1
Q ss_pred HHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccc----cHHHHHHHHHHHHHHhHhCCCEEE
Q 000979 51 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAV 126 (1202)
Q Consensus 51 l~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGL----Ds~sa~~vv~~L~~~a~~~~tTiI 126 (1202)
++..||.+.++...+ .|| +|+.+|++++|||||+|| |.....++.+.++++..+.+.|++
T Consensus 119 l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi 182 (207)
T 1znw_A 119 VDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKV 182 (207)
T ss_dssp CCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEE
T ss_pred eCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEE
Confidence 555666666665543 466 899999999999999998 777888999999888655677888
Q ss_pred EEecCCChHHHhhhcceEEec
Q 000979 127 ISLLQPAPETYDLFDDIILLS 147 (1202)
Q Consensus 127 iaihQp~~s~~~~fD~IvvL~ 147 (1202)
++.| ...++.+.+|+|++|.
T Consensus 183 ~vtH-dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 183 VVNR-RLESACAELVSLLVGT 202 (207)
T ss_dssp EECS-SHHHHHHHHHHHHC--
T ss_pred EECC-CHHHHHHHHHHHHHhc
Confidence 7765 4568889999999985
No 246
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.79 E-value=2.6e-06 Score=95.87 Aligned_cols=55 Identities=7% Similarity=-0.045 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccH
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 104 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs 104 (1202)
.+.++++|+.++ .+..++.+ ..+|||||||+++|++++.+|+||+||||++.+|.
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 455777888888 55555655 47999999999999999999999999999999986
No 247
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.79 E-value=7.8e-06 Score=93.64 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=59.5
Q ss_pred CccccchhhHHHHHh-------cCCeEeeeeCCCccccHHH------------HHHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 73 SGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 73 SGGQKqRvsIAraLv-------~~P~ILlLDEpTSGLDs~s------------a~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
|++|+|++.++++++ .+|+++++||||++||+.. ..++++.|++++++.++|||++.|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 678999999999999 6899999999999999852 356777778877777888888866543
Q ss_pred hHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 134 PETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 134 ~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
..-..|+++.+...|++++++++..+
T Consensus 288 -~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 288 -RPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp ---------------CCCCCTTCSEEE
T ss_pred -ccccccCCccccCCcceEeecCcEEE
Confidence 44446677888889999998887665
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.70 E-value=1.8e-07 Score=111.61 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=78.2
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCCH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVTI 706 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~lTv 706 (1202)
+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.... ...+.+..++|... ..|.+.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 588999999999 99999999999999999998654 35677887654321 01122334455432 2344444
Q ss_pred HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 707 YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 707 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
.|++......+.. .....++.++.+++++. .|||||+|+..|+++...+|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 4444321111100 00112333333444432 3778888888888888889987 788764
No 249
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.69 E-value=6.4e-06 Score=87.01 Aligned_cols=71 Identities=6% Similarity=0.036 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH-HHHhcceEEEEe
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMK 830 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~v~~l~ 830 (1202)
.+.|+.+|..++..+..+|+.+.++ ++.++|.....+.+.++.. .+.++|+.+|..... +...||.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678889999999888888654333 3355666666555555432 356888888876421 246788888885
No 250
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=1.5e-05 Score=83.59 Aligned_cols=38 Identities=29% Similarity=0.150 Sum_probs=24.4
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+++|||+++++|++++|+||+||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999999999998653
No 251
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.61 E-value=7.9e-06 Score=92.17 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=51.9
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc-------cc-----cceEEEe-ecCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF-----ARISGYC-EQND 698 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~-----~~~~~~v-~q~~ 698 (1202)
++++++.+++|++++++||||+||||++..|++.... ..|+|.+.+.+.... .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4789999999999999999999999999999985431 135677766554321 12 3457777 6654
Q ss_pred CCCCCCCHHHHH
Q 000979 699 IHSPFVTIYESL 710 (1202)
Q Consensus 699 ~~~~~lTv~e~l 710 (1202)
...|..++.+++
T Consensus 173 ~~~p~~~~~~~l 184 (320)
T 1zu4_A 173 NADPASVVFDAI 184 (320)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 444433344443
No 252
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.61 E-value=8.7e-05 Score=85.59 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 813 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H 813 (1202)
.++.++++..+++..+.+|++++|.-..+..|... ....+.++.+...| +++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999777774333445433 44556666665555 57777776
No 253
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.60 E-value=4.1e-05 Score=87.34 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=58.4
Q ss_pred HHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCe--EeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEE
Q 000979 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127 (1202)
Q Consensus 50 il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~--ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIi 127 (1202)
+++.+|+.+..+..++ .|| |||++|||+|+.+|+ +|+|| ||+|||+.+.. ++.....+.|+|+
T Consensus 245 lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii 309 (359)
T 2og2_A 245 LCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI 309 (359)
T ss_dssp EEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE
T ss_pred HHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE
Confidence 4455677666666553 689 999999999999999 99999 99999997552 2333234666666
Q ss_pred EecCCC-------hHHH-hhhcceEEecCCcE
Q 000979 128 SLLQPA-------PETY-DLFDDIILLSDGQI 151 (1202)
Q Consensus 128 aihQp~-------~s~~-~~fD~IvvL~~G~v 151 (1202)
.+|-.. .++. +..+.|..+..|+.
T Consensus 310 iThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 310 LTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 666221 2222 23346666666653
No 254
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.59 E-value=5.5e-06 Score=90.55 Aligned_cols=57 Identities=23% Similarity=0.139 Sum_probs=43.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHh---CCCCCceEEEEEE--------EcCccCCc----ccccceEEEeecCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCEQND 698 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~---g~~~~~~~~G~i~--------~~g~~~~~----~~~~~~~~~v~q~~ 698 (1202)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ...++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 7654 4568877 77776532 23445677887753
No 255
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.55 E-value=4e-06 Score=98.66 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=65.3
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH---hCCC-----EEEEEecCCChHHHhhh
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH---INSG-----TAVISLLQPAPETYDLF 140 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~---~~~t-----TiIiaihQp~~s~~~~f 140 (1202)
...+|||| |||+|| +++|++ |+|||+.+...+.+.+++..+ ++|+ ||++..|... ...+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 45699999 999999 888877 999999999999999988654 2253 5666555554 6778
Q ss_pred cceEEecCCcEEEEcCcchHH
Q 000979 141 DDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 141 D~IvvL~~G~vvy~G~~~el~ 161 (1202)
|++++|.+|+++..|++.++.
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHTT
T ss_pred ceEEEEeCcEEEEeCCHHHcc
Confidence 999999999999999987664
No 256
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.55 E-value=3.1e-05 Score=79.88 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.3
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++++.+.+| +++|+||||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999 99999999999999999998743
No 257
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.52 E-value=0.00016 Score=84.06 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCC
Q 000979 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 816 (1202)
Q Consensus 772 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~---~g~tvi~~~H~~~ 816 (1202)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888777766554 5788999999874
No 258
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.50 E-value=2.3e-05 Score=97.50 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=70.6
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHH
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLF 712 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 712 (1202)
|+.+++|+.++|+|++|+|||||++.|++....-...|+| .+|..... ...++.+++..|...+... ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 3567889999999999999999999999643211123554 34433221 1112223333332211100 00
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000979 713 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 792 (1202)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 792 (1202)
.....|+. |...++ .......-..++.++++| |+.|+|+.+..
T Consensus 75 ---------------------------~~nliDTp----G~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 75 ---------------------------RVFLLDAP----GYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ---------------------------EEEEEECC----CSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ---------------------------EEEEEeCC----CccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 00122221 111121 112222335688899999 99999988773
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCC
Q 000979 793 IVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 793 ~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
. ++.+.+.+.++|++.|..+
T Consensus 118 ~----~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 A----WTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp H----HHHHHHTTCCEEEEEECGG
T ss_pred H----HHHHHHccCCEEEEecCCc
Confidence 3 3333345788889999765
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.49 E-value=4e-05 Score=80.69 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
++++|++++|+|||||||||++++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999763
No 260
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.47 E-value=3.4e-05 Score=80.01 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
|++++|+||||||||||+++|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999754
No 261
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.47 E-value=0.00014 Score=81.40 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCCHHHHHhcceEE
Q 000979 756 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~--~~p~illlDEPtsgLD~~~-~~~v~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 898886 5566666 68999998 7888876 66777888877654 43 5666777654 4666666654
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=4.4e-05 Score=78.66 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=28.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 677 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 677 (1202)
.+|++++|+||||||||||+++|++.... ...|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 36899999999999999999999986432 13444443
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.45 E-value=3.2e-06 Score=89.73 Aligned_cols=83 Identities=7% Similarity=0.025 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhCCcccccccccCCcccccCccc----cchhhHHHHHhcCCeEeeeeCCCcc-------ccHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ----KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVN 112 (1202)
Q Consensus 44 ~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQ----KqRvsIAraLv~~P~ILlLDEpTSG-------LDs~sa~~vv~ 112 (1202)
.+.+.+.++.+++.+..+..+ ..+|+|| +||+++|++++.+|+++++||||++ ||+.++.++.+
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 345677888888877655543 4688885 5799999999999999999999999 99999999999
Q ss_pred HHHHHhHhCCCEEEEEecC
Q 000979 113 CLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 113 ~L~~~a~~~~tTiIiaihQ 131 (1202)
.+++.....|+|++.++|+
T Consensus 142 ~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHH
Confidence 9887544567777766664
No 264
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.45 E-value=0.00013 Score=82.20 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=80.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 710 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 710 (1202)
-|+++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.-+ ++..+-.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEESS------SCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEECC------CCHHHHH
Confidence 37777778999999999999999999998888642110 01 123444322 2322211
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000979 711 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 790 (1202)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~ 790 (1202)
.++......+++.+..+ | ...||.++++|+..|...+.++++++.|+|...
T Consensus 113 ------------------~R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 ------------------KRLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp ------------------HHHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred ------------------HHHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 11111111112111111 0 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHhC-CCE--EEEEec
Q 000979 791 AAIVMRTVRNTVDT-GRT--VVCTIH 813 (1202)
Q Consensus 791 ~~~v~~~l~~~~~~-g~t--vi~~~H 813 (1202)
...+...++++.++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 33456666666544 666 777766
No 265
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.43 E-value=0.0006 Score=76.16 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCC---HHH
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 819 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~----------~~~~v~~~l~~~~~----~g~tvi~~~H~~~---~~~ 819 (1202)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..+|.+|+++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998776532 22233444443321 2356778888753 334
Q ss_pred HHhcceE
Q 000979 820 FEAFDEL 826 (1202)
Q Consensus 820 ~~~~d~v 826 (1202)
...|++.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 4445543
No 266
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.41 E-value=2.2e-05 Score=84.51 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=34.3
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 635 vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++..++|++++|.|+||||||||+++|+|. .|++.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3445689999999999999999999999987 24577777653
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.41 E-value=7.6e-05 Score=79.94 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=55.8
Q ss_pred cCccc-cchhhHHHHHhc-------CCeEeeeeCCCccccHH-------H-----HHHHHHHHHHHhHhCCCEEEEEecC
Q 000979 72 ISGGQ-KKRVTTGEMMVG-------PALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 72 LSGGQ-KqRvsIAraLv~-------~P~ILlLDEpTSGLDs~-------s-----a~~vv~~L~~~a~~~~tTiIiaihQ 131 (1202)
.++++ ++++..+++++. +|++++|||||++||+. + ..++++.|++++++.+.|||++.|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 44444 444667777766 99999999999999983 2 2378888888877778999988774
Q ss_pred CCh---HHHhhhcceEEecCCc
Q 000979 132 PAP---ETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 132 p~~---s~~~~fD~IvvL~~G~ 150 (1202)
.+. .+...+|++++|.+|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 432 3667789999998754
No 268
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.40 E-value=6.5e-05 Score=94.13 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=50.4
Q ss_pred ccccCccccchhhHHHHH--hcCCeEeeeeCC---CccccHHHH-HHHHHHHHHHhHhCCCEEEEEecCCC
Q 000979 69 IRGISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPA 133 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraL--v~~P~ILlLDEp---TSGLDs~sa-~~vv~~L~~~a~~~~tTiIiaihQp~ 133 (1202)
..++|+|+++++.+|+++ +++|++++|||| ||+||..+. ..+++.+++ .+.|+++++|.+.
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFE 699 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHH
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 357899999999999999 999999999999 999998774 567777765 4678888888654
No 269
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.36 E-value=2.7e-05 Score=81.78 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=38.7
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE--EEcCccC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPK 682 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i--~~~g~~~ 682 (1202)
...++.++..++|++++|+|||||||||++++|++.... .|.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCchh
Confidence 345677778899999999999999999999999986431 2344 6776544
No 270
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.36 E-value=5.9e-05 Score=95.05 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=62.0
Q ss_pred ccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHH-HHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCC
Q 000979 71 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 149 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~v-v~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G 149 (1202)
.+|+|++ |++.+...+++|++++|||||+|+|+.....+ ++.++.+....+.|+++++|.+. ..+++|++..+.+|
T Consensus 669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEE
T ss_pred hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEE
Confidence 4565554 55555556899999999999999998766665 56666665435889999988874 45689998888888
Q ss_pred cEEEEcCc
Q 000979 150 QIVYQGPR 157 (1202)
Q Consensus 150 ~vvy~G~~ 157 (1202)
++.+....
T Consensus 746 ~~~~~~~~ 753 (800)
T 1wb9_A 746 HLDALEHG 753 (800)
T ss_dssp EEEEEEET
T ss_pred EEEEEEcC
Confidence 88776543
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.34 E-value=0.0011 Score=75.67 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=77.2
Q ss_pred eecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhCC--CCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000979 632 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 632 L~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~g~--~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .... ..| ....+.|+.-+..+ ...+
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-------~gg-------~~~~vlyi~~E~~~----~~~~ 172 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-------GGY-------PGGKIIFIDTENTF----RPDR 172 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-------TTB-------CCCEEEEEESSSCC----CHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-------cCC-------CCCeEEEEECCCCC----CHHH
Confidence 44433 57999999999999999999999988863 2100 000 01224455443321 1111
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH-HHHHHHHHHHHh----hCCCEEEEeCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV----ANPSIIFMDEPT 783 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~aL~----~~p~illlDEPt 783 (1202)
-......+. .+. +++++.+.+. +..++. +.+.+..++.++ .+++++++|+.+
T Consensus 173 l~~~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 173 LRDIADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp HHHHHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 111221111 111 1233322111 012222 234555666666 568999999999
Q ss_pred CCCCHH------------HHHHHHHHHHHHHhC-CCEEEEEecCC
Q 000979 784 SGLDAR------------AAAIVMRTVRNTVDT-GRTVVCTIHQP 815 (1202)
Q Consensus 784 sgLD~~------------~~~~v~~~l~~~~~~-g~tvi~~~H~~ 815 (1202)
+-.+.. ....++..|++++++ |.+||++.|-.
T Consensus 230 ~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 230 ALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 866442 124455556666644 88888888853
No 272
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.33 E-value=0.00014 Score=78.90 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHhcCCeEeeeeCCCcccc-----HHHHHHHHHHHHHHhHhCCCEEEEEecCCChH--------HHhhh-cceEEec
Q 000979 84 EMMVGPALALFMDEISTGLD-----SSTTFQIVNCLRQNIHINSGTAVISLLQPAPE--------TYDLF-DDIILLS 147 (1202)
Q Consensus 84 raLv~~P~ILlLDEpTSGLD-----s~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s--------~~~~f-D~IvvL~ 147 (1202)
..-..+|++++|||||++|| ......+.+.++.+. +.++||+++.|..... +...+ |+|++|.
T Consensus 130 ~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~-~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 130 VVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL-EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH-HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH-HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 33357999999999999998 666655777777654 4688999988876543 15788 9999995
No 273
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.31 E-value=3.7e-05 Score=88.39 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=34.6
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4799999999999999999999999999999999853
No 274
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.28 E-value=1.4e-05 Score=91.13 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=64.4
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH-hCCC-----EEEEEecCCChHHHhhhcc
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSG-----TAVISLLQPAPETYDLFDD 142 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~-~~~t-----TiIiaihQp~~s~~~~fD~ 142 (1202)
...+|+|| |||++| +.+|++ |+|||+.....+.+.+++..+ .+|+ ||++..|... -..+|+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 45799999 999999 578876 999999999999999987653 3455 5666655544 466899
Q ss_pred eEEecCCcEEEEcCcchHH
Q 000979 143 IILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 143 IvvL~~G~vvy~G~~~el~ 161 (1202)
+++|.+|+++..|+.+++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHCSEEEEBCHHHHTTT
T ss_pred eEEeeCcEEEEeCCHHHcC
Confidence 9999999999999887663
No 275
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.25 E-value=0.00018 Score=78.58 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=49.6
Q ss_pred cchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecC
Q 000979 77 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 148 (1202)
Q Consensus 77 KqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~ 148 (1202)
.-|++||++|..+|+++++|||| |..+...+++ . + ..+.+|++++|... ....+|++++|..
T Consensus 86 ~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~-~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEMR---DLETVETALR---A-A-ETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-H-HTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-H-ccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 34899999999999999999999 8877654433 2 3 35789998888755 6788999999864
No 276
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.24 E-value=0.00013 Score=77.15 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999998764
No 277
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.20 E-value=0.00014 Score=86.06 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=49.6
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE-EecCCEEEEEcCCCc
Q 000979 772 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLGR 843 (1202)
Q Consensus 772 ~~p~illlDEPtsgLD~-~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~-l~~gG~~~~~G~~~~ 843 (1202)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|.+..++..+.+++.- +. .|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 38999999999887764 6777888999888777899999999864322112222222 22 367777777763
No 278
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.19 E-value=0.00012 Score=77.11 Aligned_cols=69 Identities=10% Similarity=-0.031 Sum_probs=54.2
Q ss_pred HHHHHHHhCCcccccccccCCcccccCccccch-hhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 47 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 47 v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqR-vsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+..++...+++.. .|++. .-.+||||||| +..+++++.+|.++++||||||||.....++.+.|.+...
T Consensus 129 ~~~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 129 MIEWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3445556666532 23422 34699999999 8999999999999999999999999999999999988764
No 279
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.17 E-value=0.00089 Score=75.80 Aligned_cols=143 Identities=22% Similarity=0.239 Sum_probs=77.4
Q ss_pred eecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 632 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 632 L~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| | ....+.|+.-+..+. ..+-
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~g-----g-------~~~~vlyi~~e~~~~----~~~l 158 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KG-----G-------LSGKAVYIDTEGTFR----WERI 158 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GT-----C-------CSCEEEEEESSSCCC----HHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cC-----C-------CCCeEEEEECCCCCC----HHHH
Confidence 44432 579999999999999999999999887531 1100 00 0 012344554432211 1111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCC
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSG 785 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~aL~---~~p~illlDEPtsg 785 (1202)
......+. .+. +++++.+- +. +..++. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~g----~~~-------~~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKALG----LDI-------DNVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHhC----CCH-------HHHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 11111111 111 12222111 10 112333 345677788888 57999999999976
Q ss_pred CCH--------HH----HHHHHHHHHHHHhC-CCEEEEEecC
Q 000979 786 LDA--------RA----AAIVMRTVRNTVDT-GRTVVCTIHQ 814 (1202)
Q Consensus 786 LD~--------~~----~~~v~~~l~~~~~~-g~tvi~~~H~ 814 (1202)
.+. .. ...++..|++++++ |.+||++.|-
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 532 11 23455556666544 8899988774
No 280
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.17 E-value=0.00022 Score=75.10 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=27.1
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++++|+|+|||||||+.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 367789999999999999999999999864
No 281
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.12 E-value=0.0014 Score=77.67 Aligned_cols=169 Identities=16% Similarity=0.190 Sum_probs=92.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
|+.+.+-+++|+++.|.|++|+|||||..-++...... . | ..+.|+.-+ ++..+-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~------g---------~~vl~~slE------~~~~~l~~ 246 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--E------G---------VGVGIYSLE------MPAAQLTL 246 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--T------C---------CCEEEEESS------SCHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--C------C---------CeEEEEECC------CCHHHHHH
Confidence 67777779999999999999999999988887532100 0 0 012232221 22222111
Q ss_pred -H-HHHccCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeC
Q 000979 712 -F-SAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDE 781 (1202)
Q Consensus 712 -~-~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~--~~p~illlDE 781 (1202)
+ +.....+ ...+.++. .++.+.++.+.-.+.. +-+ ..++|..+- .+.++.+. .+|+++++|.
T Consensus 247 R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 247 RMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcC
Confidence 0 1111110 01223322 2233333333221111 111 124777665 34556665 4799999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecCC-----------CH-------HHHHhcceEEEEec
Q 000979 782 PTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQP-----------SI-------DIFEAFDELFLMKR 831 (1202)
Q Consensus 782 PtsgLD~----------~~~~~v~~~l~~~~~~-g~tvi~~~H~~-----------~~-------~~~~~~d~v~~l~~ 831 (1202)
.+.-.++ .....+.+.|+.++++ +.+||+++|-. .. .+.+.+|.++.|.+
T Consensus 319 l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 319 LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 8754332 1224667778888765 89999998832 10 23456788888864
No 282
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.06 E-value=9.3e-05 Score=83.46 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=44.1
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEee--------------cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
...+.|+|+++.|+. .+..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 131 ~~ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 131 RNKILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TTSCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred cCCceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 345788999988763 233566 89999999999999999999999999999873
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.04 E-value=0.00023 Score=73.84 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=25.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+|++++|+||||||||||++.|.+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3489999999999999999999999854
No 284
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.01 E-value=0.00033 Score=69.62 Aligned_cols=30 Identities=27% Similarity=0.663 Sum_probs=24.5
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
++.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555565 99999999999999999986
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.98 E-value=0.00029 Score=71.94 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=28.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.+|++++|+|||||||||++++|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998753 344555543
No 286
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.95 E-value=3.9e-05 Score=86.13 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=32.7
Q ss_pred ceEEeecceEEEeCCe------EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 628 KLVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge------~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+..|++++..+.+++ ++||+||||||||||+++|.+..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3446777777777776 99999999999999999999854
No 287
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.88 E-value=0.0011 Score=77.29 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.+++++||+|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999874
No 288
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.88 E-value=0.0002 Score=80.16 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=39.5
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCcc-ccHHHHHHHHHHHHHHhHhCCCEEEEEec
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLL 130 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSG-LDs~sa~~vv~~L~~~a~~~~tTiIiaih 130 (1202)
.+++|||||||+.+||+++ +|++||||++ ||+... +.++++....+.++|++-|
T Consensus 111 ~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 111 LHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp HHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred HHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 3689999999999999985 9999999985 999763 4444443323455555544
No 289
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.00042 Score=80.29 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.85 E-value=0.00037 Score=70.94 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
.|++++|+|||||||||++++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998643
No 291
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.00033 Score=75.41 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 824 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 824 (1202)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++.--+.....+.++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 456655542 33578999999999976 6777666444444443323335666666555444445554
No 292
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.81 E-value=0.00087 Score=75.04 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999754
No 293
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.79 E-value=0.001 Score=84.66 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=28.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
+.+++|+.++|.||||+|||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999999998753
No 294
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.00017 Score=73.36 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeE
Q 000979 47 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 92 (1202)
Q Consensus 47 v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~I 92 (1202)
.+.+++. .|+ ..||.||+ ++||||||||+|||+++++|+|
T Consensus 85 l~~~i~~-~l~-g~dt~i~E----glSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 85 LDWIYER-YLS-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp HHHHHHH-HTT-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGG
T ss_pred HHHHHHh-hCC-CCCEEEEC----CcCCCCCcEEEEEecccCCCcc
Confidence 4455555 134 68999993 4999999999999999999986
No 295
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.0006 Score=71.45 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=26.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..++|++++|+|+||||||||++.|++..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999854
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.66 E-value=0.00097 Score=76.11 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=46.0
Q ss_pred hHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCc
Q 000979 81 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 81 sIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~ 150 (1202)
+||++|..+|+++++|||| |..+. +.+.+.+ ..|.|+++++|..+. ...+||+++|..|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~-~~G~~vl~t~H~~~~--~~~~dRli~l~~~~ 247 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETI----RLALTAA-ETGHLVFGTLHTTSA--AKTIDRVVDVFPAE 247 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHH-HTTCEEEEEESCSSH--HHHHHHHHHTSCHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHH-hcCCEEEEEEccChH--HHHHHHHhhhcCcc
Confidence 8999999999999999999 66554 3333334 357888888887663 48899999996653
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.58 E-value=0.00029 Score=78.24 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=40.5
Q ss_pred HHHHHHHhCCc----ccccccccCCcccccCccccchhhHH--HHHhcCCeEeeeeCCCccccHHH
Q 000979 47 TDYYLKVLGLD----VCADTMVGDEMIRGISGGQKKRVTTG--EMMVGPALALFMDEISTGLDSST 106 (1202)
Q Consensus 47 v~~il~~lgL~----~~~dT~VG~~~~~gLSGGQKqRvsIA--raLv~~P~ILlLDEpTSGLDs~s 106 (1202)
..+.++.+... ....+.++ .....+||||+||+++| +++ +|+||++||+|+|||+..
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 44556665432 01223343 45578999999999998 665 899999999999999854
No 298
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.53 E-value=0.01 Score=63.69 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 000979 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 813 (1202)
Q Consensus 772 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~--~g~tvi~~~H 813 (1202)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888766666555543322 1358888888
No 299
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.46 E-value=0.032 Score=63.48 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55543 4689999999999999999999988764
No 300
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.45 E-value=0.0013 Score=70.48 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=25.7
Q ss_pred eecceEEEe---CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 632 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 632 L~~vs~~i~---~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
|.++|+++. +|.+++|.||+||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 666777666 99999999999999999999998754
No 301
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.43 E-value=0.0029 Score=64.19 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999853
No 302
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.40 E-value=0.0016 Score=68.30 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=24.0
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445555564 99999999999999999985
No 303
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.37 E-value=0.0042 Score=65.75 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCCHHHHHhcceEEEEe
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 830 (1202)
+|+++++||.-- |+. .+++.++.+++.|.+||++-| .++.++.+++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355566777777999999999 56678889999999875
No 304
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.35 E-value=0.00071 Score=82.19 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=38.6
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+++++++++ +|+.++|+||||+|||||+++|++... +..|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3577788887 899999999999999999999998653 34677766664
No 305
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.33 E-value=0.00086 Score=72.62 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=53.0
Q ss_pred CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChH
Q 000979 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 135 (1202)
Q Consensus 56 L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s 135 (1202)
|.+..+..+ ..+|||||||+++ ++++.+|++++||||...+|.. +.+. .+.||+++.|. ...
T Consensus 106 l~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~-~~~ 167 (245)
T 2jeo_A 106 IVEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS-DVR 167 (245)
T ss_dssp HHTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH-HHH
T ss_pred HHCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH-HHH
Confidence 456666665 4799999999988 6888999999999998877752 2222 35678887663 223
Q ss_pred HHhh-hcceEEecCCcEEEEcCcchHHHHH
Q 000979 136 TYDL-FDDIILLSDGQIVYQGPRELVLEFF 164 (1202)
Q Consensus 136 ~~~~-fD~IvvL~~G~vvy~G~~~el~~~F 164 (1202)
..+. .+++ .+|+ +.+++.+.+
T Consensus 168 ~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 168 LSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp HHHHHHHHT---C--------CHHHHHHHH
T ss_pred HHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 3333 3334 5564 556665433
No 306
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.30 E-value=0.0054 Score=67.76 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3556679999999999999999998754
No 307
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.28 E-value=0.00094 Score=80.59 Aligned_cols=43 Identities=37% Similarity=0.449 Sum_probs=33.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEE-EEE-EcCcc
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIT-ISGYP 681 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~-~~g~~ 681 (1202)
..+++|++++|+|+||||||||+++|+|...+. .| .+. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 357899999999999999999999999965421 23 453 66643
No 308
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.27 E-value=0.0018 Score=66.19 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999998753
No 309
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.24 E-value=0.0035 Score=64.77 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=21.0
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 688999998887 6799999999999999999874
No 310
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.24 E-value=0.00085 Score=76.53 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.2
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+++++++.+++|.+++|+|++|+|||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999999999999998753
No 311
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.21 E-value=0.0077 Score=70.97 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+..-+++|+++.|.|++|+|||||.--++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 666666789999999999999999999877764
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.19 E-value=0.002 Score=68.69 Aligned_cols=56 Identities=21% Similarity=0.081 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEE--------cCccCCc----ccccceEEEeecC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITI--------SGYPKKQ----ETFARISGYCEQN 697 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~--------~g~~~~~----~~~~~~~~~v~q~ 697 (1202)
+.+++|+|||||||||+.++|++.... -...|++.. +|.+... ...++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999975311 123455554 4544321 1233456666664
No 313
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.19 E-value=0.0021 Score=66.17 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.2
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999864
No 314
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.19 E-value=0.0099 Score=67.08 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000979 771 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815 (1202)
Q Consensus 771 ~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 815 (1202)
..+|++|++||+.. .-|......+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344677888888888777777788887754
No 315
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.15 E-value=0.00054 Score=84.27 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=61.5
Q ss_pred cccchhhHHHHHhcCCeEeeeeCC------CccccHHHHHHHHHHHHHHhHhCCCE-EEEEecCCC------hHHHhhhc
Q 000979 75 GQKKRVTTGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGT-AVISLLQPA------PETYDLFD 141 (1202)
Q Consensus 75 GQKqRvsIAraLv~~P~ILlLDEp------TSGLDs~sa~~vv~~L~~~a~~~~tT-iIiaihQp~------~s~~~~fD 141 (1202)
..++++.++.+....|+++++||| |+|||+....++.+.+++.....++. ++++.|--. ..+.+..|
T Consensus 132 ~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~ 211 (608)
T 3szr_A 132 ISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD 211 (608)
T ss_dssp CCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC
T ss_pred cchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh
Confidence 445677777777788999999999 99999999999999998865433333 333333211 23334432
Q ss_pred -----ceEEecCCcEEEEcCcchHHH
Q 000979 142 -----DIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 142 -----~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.|+|+.++..+..|+.+++.+
T Consensus 212 ~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 212 PEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp SSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred hcCCceEEEecchhhcCcccHHHHHH
Confidence 478999999999998766554
No 316
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.15 E-value=0.0032 Score=74.42 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC------Cc----eEEEEEEEcCcc
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKT------GG----YITGNITISGYP 681 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~------~~----~~~G~i~~~g~~ 681 (1202)
.++|+|+||+|||||+|.|+|... ++ +..|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999632 11 335788888864
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.09 E-value=0.0022 Score=67.16 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34688999999999999999999998654
No 318
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.99 E-value=0.0074 Score=64.79 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=49.5
Q ss_pred cCccccch-hhHHHHHh--cCCeEeeeeCCCccccHH-------H-----HHHHHHHHHHHhHhCCCEEEEEecCCChH-
Q 000979 72 ISGGQKKR-VTTGEMMV--GPALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQPAPE- 135 (1202)
Q Consensus 72 LSGGQKqR-vsIAraLv--~~P~ILlLDEpTSGLDs~-------s-----a~~vv~~L~~~a~~~~tTiIiaihQp~~s- 135 (1202)
.++.+..+ +.-.++++ .+|+++++||||+.+|+. + ..++++.|++++++.+.||+++.|..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 44444332 33344444 489999999999999985 3 34577778887776788988886643321
Q ss_pred -----------------HHhhhcceEEecCCc
Q 000979 136 -----------------TYDLFDDIILLSDGQ 150 (1202)
Q Consensus 136 -----------------~~~~fD~IvvL~~G~ 150 (1202)
.-..+|++++|.+|+
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ------------------CCTTCEEEEEEECS
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 222789999998653
No 319
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.92 E-value=0.0013 Score=68.47 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 46889999888885 689999999999999999874
No 320
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.88 E-value=0.00089 Score=76.92 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.3
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.++++++++| +|+|+||+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34678888876 999999999999999998753
No 321
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.87 E-value=0.0059 Score=62.38 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=39.9
Q ss_pred HHhcCCeEeeeeCCCc-cccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChH
Q 000979 85 MMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 135 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTS-GLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s 135 (1202)
..+.+|++|+||||++ ++|......+.+.+.... ..++++|++.|++..+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChhH
Confidence 4456899999999996 899988877777777654 4678999998887654
No 322
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.86 E-value=0.031 Score=63.90 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++..-+.|.||+|+|||||.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455679999999999999999998653
No 323
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.76 E-value=0.00012 Score=84.60 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=51.1
Q ss_pred CcccccccccCCcccccCccccchhhHHHHHhcCCeE--eeeeCCCccccHH----H-H---HHHHHHHHHHhHhCCCEE
Q 000979 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA--LFMDEISTGLDSS----T-T---FQIVNCLRQNIHINSGTA 125 (1202)
Q Consensus 56 L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~I--LlLDEpTSGLDs~----s-a---~~vv~~L~~~a~~~~tTi 125 (1202)
|.++.++.|+ .+...+||| ||++|+|+++.+|+| +++||+||+||+. + + ..+.+.+.+...++.||+
T Consensus 269 l~~~l~~vv~-qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~ 345 (372)
T 2ewv_A 269 LSFILQGIIS-QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITL 345 (372)
T ss_dssp HHHSCCEEEE-EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCT
T ss_pred HHHhhhEEEE-EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCH
Confidence 4567888887 333447899 899999999999999 9999999999975 2 1 234555555555566666
Q ss_pred EEE
Q 000979 126 VIS 128 (1202)
Q Consensus 126 Iia 128 (1202)
.++
T Consensus 346 ~~a 348 (372)
T 2ewv_A 346 EDA 348 (372)
T ss_dssp TTT
T ss_pred HHH
Confidence 555
No 324
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.73 E-value=0.029 Score=63.15 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.6
Q ss_pred eecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs-~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44433 5789999999999999999999988774
No 325
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.70 E-value=0.0044 Score=70.75 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++.+++|+|++|||||||+|.|+|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999853
No 326
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.68 E-value=0.0014 Score=73.74 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=32.3
Q ss_pred EeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhCC
Q 000979 631 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~--~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++++++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 67888889999998 999999999999999999984
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.68 E-value=0.004 Score=65.04 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 328
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.64 E-value=0.015 Score=67.03 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 329
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.55 E-value=0.0005 Score=71.15 Aligned_cols=82 Identities=6% Similarity=-0.027 Sum_probs=58.3
Q ss_pred CccccchhhHHH------HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEe
Q 000979 73 SGGQKKRVTTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 146 (1202)
Q Consensus 73 SGGQKqRvsIAr------aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL 146 (1202)
|+|++||+.++. ++..+|+...+|+ +||...... ++.++... ..+.++|.+.|.--.++-+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--
Confidence 999999999888 9999999888894 899977777 77777654 3467888876651357788899999
Q ss_pred cCCcEEEEcCcchHH
Q 000979 147 SDGQIVYQGPRELVL 161 (1202)
Q Consensus 147 ~~G~vvy~G~~~el~ 161 (1202)
.+|+++.+|+.+-+.
T Consensus 169 ~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 169 TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HCGGGSCC-------
T ss_pred hCCcEEEeecCCchh
Confidence 999999999987664
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.48 E-value=0.0054 Score=63.05 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..++|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678999999999999999999998753
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.45 E-value=0.0015 Score=75.32 Aligned_cols=87 Identities=8% Similarity=-0.089 Sum_probs=60.8
Q ss_pred ccCccccchhhHHHHHh-cCCeEeeeeC---CC------ccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhh
Q 000979 71 GISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 140 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv-~~P~ILlLDE---pT------SGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~f 140 (1202)
.+|+|++||..+++++. .+|++++||| |+ ++||......+.+.++++.++.+.++++.. +| .+.-+.+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~-~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP-SYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS-SHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC-CHHHHHH
Confidence 56778889988888775 5899999999 54 689999999999999887654466666654 34 4677788
Q ss_pred cceEEecCCcEEEEcCcchHH
Q 000979 141 DDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 141 D~IvvL~~G~vvy~G~~~el~ 161 (1202)
|.+.++++ ++..|+.+||.
T Consensus 336 ~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp HHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHH--HhcccchhHhh
Confidence 88887763 44555555553
No 332
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.44 E-value=0.0063 Score=61.84 Aligned_cols=37 Identities=35% Similarity=0.352 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC-CceEEEEEEEcC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISG 679 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g 679 (1202)
.+++|+|+||||||||++.|.+... .+...|.+..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5899999999999999999987421 122235555544
No 333
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.40 E-value=0.014 Score=59.67 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 334
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.39 E-value=0.039 Score=59.84 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++..-+.|.||+|+|||||.+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999864
No 335
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.36 E-value=0.0062 Score=64.12 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=26.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+++|.+++|+|++||||||+.+.|++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999998754
No 336
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.34 E-value=0.0079 Score=60.35 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.34 E-value=0.0075 Score=61.85 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999974
No 338
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.29 E-value=0.13 Score=57.83 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.|..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999998754
No 339
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.26 E-value=0.0065 Score=63.38 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 340
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.21 E-value=0.12 Score=62.08 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.6
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+..-+++|+++.|.|++|+|||||+--++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 555555689999999999999999999877653
No 341
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.10 E-value=0.0024 Score=72.86 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.3
Q ss_pred eEEeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhCCC
Q 000979 629 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~--~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467788888899998 9999999999999999999853
No 342
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.06 E-value=0.14 Score=58.36 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877753
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.02 E-value=0.012 Score=59.93 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
|.++.|.|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
No 344
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.00 E-value=0.011 Score=59.63 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|.|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 345
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.94 E-value=0.011 Score=62.83 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-+++|.||+||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999854
No 346
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.93 E-value=0.011 Score=63.41 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999864
No 347
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.90 E-value=0.0098 Score=68.30 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=32.4
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---------CceEEEEEEEcCc
Q 000979 636 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGY 680 (1202)
Q Consensus 636 s~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~---------~~~~~G~i~~~g~ 680 (1202)
-..+..|..++|+|+||+|||||+|.|+|... -.+..|.+.+.+.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34667888999999999999999999998621 1133566666553
No 348
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.87 E-value=0.012 Score=60.20 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
No 349
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.83 E-value=0.09 Score=58.00 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVL 662 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l 662 (1202)
+-+++| ++.|.||+|+|||||+--+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHH
Confidence 568899 9999999999999994433
No 350
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.78 E-value=0.0082 Score=69.85 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=38.6
Q ss_pred ccCccccchhhHHHHHhcCCe---EeeeeCCC-ccccHHHHHHHHHHHHHHhHhCCCEEEEEec
Q 000979 71 GISGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLL 130 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~---ILlLDEpT-SGLDs~sa~~vv~~L~~~a~~~~tTiIiaih 130 (1202)
+++++.+||++|||+++++|+ +|++|||| +|||+... .+++.| . .+.++|+.++
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L---~--~~v~iIlVin 175 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRL---H--EKVNIIPLIA 175 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHH---T--TTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHH---h--ccCcEEEEEE
Confidence 467888999999999999999 99999999 69998653 444444 2 3566666554
No 351
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.75 E-value=0.0096 Score=64.71 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=23.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++++++..++| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 44455555555 8899999999999999999753
No 352
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.64 E-value=0.0083 Score=65.14 Aligned_cols=45 Identities=29% Similarity=0.359 Sum_probs=32.9
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+++.+ ..+++.++.|+|+|||||||+.+.|+..... +.+.+++..
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 44444 5677899999999999999999999875432 234556543
No 353
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.64 E-value=0.015 Score=59.88 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999975
No 354
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.58 E-value=0.016 Score=59.42 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
No 355
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.57 E-value=0.015 Score=59.61 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998654
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.55 E-value=0.01 Score=65.87 Aligned_cols=33 Identities=33% Similarity=0.228 Sum_probs=28.7
Q ss_pred ec-ceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 633 NG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 633 ~~-vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++ ++++.+ |++++++|++|+||||++..|++..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45 777766 9999999999999999999999853
No 357
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.54 E-value=0.015 Score=67.64 Aligned_cols=45 Identities=24% Similarity=0.096 Sum_probs=34.4
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+++++. +|++++++|+|||||||++..|++..... .+.+.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc
Confidence 567877 89999999999999999999999854311 2455555544
No 358
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.36 E-value=0.042 Score=56.57 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCCHHHHHhcceEEEEe
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 830 (1202)
+.+++++||.-- +|+. .++.++++++.|..||++.+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999654 6643 35667777777999999999 55577889999998774
No 359
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.32 E-value=0.018 Score=62.42 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
No 360
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.31 E-value=0.021 Score=58.41 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999753
No 361
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.23 E-value=0.021 Score=57.48 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 000979 644 LTALMGVSGAGKTTLMDVL 662 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l 662 (1202)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 362
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.22 E-value=0.023 Score=59.88 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.16 E-value=0.02 Score=58.25 Aligned_cols=25 Identities=40% Similarity=0.306 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
..+..+.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 364
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.09 E-value=0.025 Score=58.78 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
No 365
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.07 E-value=0.069 Score=60.77 Aligned_cols=63 Identities=6% Similarity=0.051 Sum_probs=43.7
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCc
Q 000979 86 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 157 (1202)
Q Consensus 86 Lv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~ 157 (1202)
+.++|+|+++|||++ ||..+...+.+.+.+.. .++++|++.|++..-.-. +.+...++...+.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~------l~sR~~~~~~~~~ 193 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP------IKSQCLLIRCPAP 193 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH------HHTTSEEEECCCC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH------HHhhceEEecCCc
Confidence 678999999999999 99999988988887743 467888888877531111 2344556666654
No 366
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.04 E-value=0.032 Score=66.24 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=62.8
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhCCcccccc--cccCCcccccCccccchh----------hHHHHHhcCCe-EeeeeCCC
Q 000979 33 MKAIATEGQEANVITDYYLKVLGLDVCADT--MVGDEMIRGISGGQKKRV----------TTGEMMVGPAL-ALFMDEIS 99 (1202)
Q Consensus 33 ~~~~~~~~~~~~~~v~~il~~lgL~~~~dT--~VG~~~~~gLSGGQKqRv----------sIAraLv~~P~-ILlLDEpT 99 (1202)
.+.+.....|.+++ .+.+...|+.+..+- .+. ..+||||+||. .+|+++...|. ++++||++
T Consensus 233 ~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 233 ANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 33444444555554 357888888764332 232 35899999974 35667778897 89999999
Q ss_pred ccccHHHHHHHHHHHHHHh---HhCCCEEEEEecCCCh
Q 000979 100 TGLDSSTTFQIVNCLRQNI---HINSGTAVISLLQPAP 134 (1202)
Q Consensus 100 SGLDs~sa~~vv~~L~~~a---~~~~tTiIiaihQp~~ 134 (1202)
.-+|... ..+.+.+.+++ +.-|.++|+++|.|+.
T Consensus 308 ~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 308 DLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred HHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 9998532 34555555444 3446789999999883
No 367
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.00 E-value=0.025 Score=62.59 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999997643
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.98 E-value=0.025 Score=58.69 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
No 369
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.96 E-value=0.029 Score=58.64 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+|.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 370
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.94 E-value=0.01 Score=64.15 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=36.9
Q ss_pred cccCccccchhhHHHHH-hcCCeEeeee----CCCccccHHHHHHHHHHHHHHhH
Q 000979 70 RGISGGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraL-v~~P~ILlLD----EpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
..+|| |+ +++ +.+|++++|| |||+|||..+...+.+.+++...
T Consensus 151 ~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 151 HPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp ETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 45888 77 677 9999999999 99999999998899888887643
No 371
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.91 E-value=0.028 Score=58.83 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++|.+++|.|++||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
No 372
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.81 E-value=0.00092 Score=69.83 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=44.4
Q ss_pred HHH-HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEec
Q 000979 82 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 147 (1202)
Q Consensus 82 IAr-aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~ 147 (1202)
+++ +++.+|++++|||+|+++|+.++..|.+.|.+.... +.++ | ++ ..||.|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a---~--~~-~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESS---K--EP-GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGG---G--ST-TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHh---h--cc-CCceEEEECC
Confidence 565 889999999999999999999999999999875432 1111 3 33 7899999986
No 373
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.79 E-value=0.031 Score=56.69 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g 664 (1202)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 374
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.79 E-value=0.049 Score=60.35 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=32.3
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346789988887 8899999999999999999999765
No 375
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.77 E-value=0.028 Score=57.90 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999753
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.76 E-value=0.028 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|+|++|||||||++.|.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999864
No 377
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.76 E-value=0.082 Score=55.04 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCCHHHHHhcceEEEEe
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 830 (1202)
+.+++++||.-- +|+. . ++.+++++..|..||++-+ .++.++.+++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~---~-V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD---I-VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT---H-HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH---H-HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999876 6643 2 3667777777999999999 77788899999998885
No 378
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.73 E-value=0.028 Score=56.91 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 379
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.73 E-value=0.048 Score=63.02 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=50.9
Q ss_pred cchhhHHHHHh--cCCeEeeeeCCCccccHHHH------------HHHHHHHHHHhHhCCCEEEEEecCCC---------
Q 000979 77 KKRVTTGEMMV--GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQPA--------- 133 (1202)
Q Consensus 77 KqRvsIAraLv--~~P~ILlLDEpTSGLDs~sa------------~~vv~~L~~~a~~~~tTiIiaihQp~--------- 133 (1202)
++.+..+++++ .+|+++++||||+.+|+... .++++.|++++++.+.|||++.|-.+
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 34444444443 46999999999999996433 57888899988878999999988621
Q ss_pred ---------hHHHhhhcceEEecCCc
Q 000979 134 ---------PETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 134 ---------~s~~~~fD~IvvL~~G~ 150 (1202)
..+-..+|.++.|.+|+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---------CHHHHHCSEEEEEEECS
T ss_pred CCCccCCchhHHHHhcceEEEEEecC
Confidence 12345578888887664
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.69 E-value=0.014 Score=64.98 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=37.1
Q ss_pred cCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecC
Q 000979 72 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 72 LSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQ 131 (1202)
++..+|||++|||+++.+|+.++| +||+.+..++++.+++.....+.|+|+.+|-
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 456669999999999999994444 4555555556666666554446666666564
No 381
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.65 E-value=0.027 Score=61.67 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.63 E-value=0.016 Score=60.87 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+++|.|++||||||+++.|+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998753
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.62 E-value=0.033 Score=58.39 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++|.+++|.|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999985
No 384
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.59 E-value=0.035 Score=57.58 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999865
No 385
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.3 Score=56.67 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++-.=+.|.||+|+|||+|.+++++..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344458999999999999999999753
No 386
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.57 E-value=0.12 Score=50.32 Aligned_cols=42 Identities=2% Similarity=0.078 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000979 773 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815 (1202)
Q Consensus 773 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 815 (1202)
+..+|++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 45789999975 5788878888887776433355677777654
No 387
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.47 E-value=0.25 Score=57.01 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998653
No 388
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.47 E-value=0.64 Score=62.64 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=28.3
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|+.+- +-+++|+++.|.||+|+|||||+..++..
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 44444 26999999999999999999999998763
No 389
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.46 E-value=0.088 Score=51.82 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=34.1
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE-EEEEecCCCh
Q 000979 85 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT-AVISLLQPAP 134 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT-iIiaihQp~~ 134 (1202)
+++.+|++|+||||++ +|...+..+.+.+.+... .+++ +|++.|.+..
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESSCTT
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCCCHH
Confidence 4567899999999998 555457778888877554 4555 7777675543
No 390
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.46 E-value=0.016 Score=60.03 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999753
No 391
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.31 Score=56.12 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++-.=+.|.||+|+|||+|.++|++..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh
Confidence 344458999999999999999999853
No 392
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.36 E-value=0.041 Score=56.50 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 393
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.33 E-value=0.036 Score=56.81 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 394
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.14 E-value=0.13 Score=60.76 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=60.8
Q ss_pred cccCccccchhhHHHHHh--cCCeEeeeeCCCccccH--------HHHHHHHHHHHHHhHhCCCEEEEEecC--------
Q 000979 70 RGISGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLRQNIHINSGTAVISLLQ-------- 131 (1202)
Q Consensus 70 ~gLSGGQKqRvsIAraLv--~~P~ILlLDEpTSGLDs--------~sa~~vv~~L~~~a~~~~tTiIiaihQ-------- 131 (1202)
.++|++|.+ +.++.++ .+|+++++|+++...++ ..-..+.+.|+.+|++.+.+||++.|-
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 368999876 6677776 57999999999998743 122577888999988778888877661
Q ss_pred ---CCh-------HHHhhhcceEEecCCcE
Q 000979 132 ---PAP-------ETYDLFDDIILLSDGQI 151 (1202)
Q Consensus 132 ---p~~-------s~~~~fD~IvvL~~G~v 151 (1202)
|.. ++-+.+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 432 56778999999987764
No 395
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.13 E-value=0.022 Score=66.11 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=53.6
Q ss_pred ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceE
Q 000979 69 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 144 (1202)
Q Consensus 69 ~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~Iv 144 (1202)
...+|+|||||+++|++|...|.|+++ +++|..++ ..++.+++.....+.+++.+.......+-++++.|.
T Consensus 250 ~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 250 LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 457999999999999999999999999 99999776 566666665544566666654555556666666553
No 396
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.09 E-value=0.046 Score=57.65 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|-.+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999753
No 397
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.01 E-value=0.35 Score=55.35 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=40.0
Q ss_pred hhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hCCCEEEEEecCCCHHHHHhcceEEEEecC--CE
Q 000979 771 VANPSIIFMDEPTSGL----------DARAAAIVMRTVRNTV----DTGRTVVCTIHQPSIDIFEAFDELFLMKRG--GQ 834 (1202)
Q Consensus 771 ~~~p~illlDEPtsgL----------D~~~~~~v~~~l~~~~----~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g--G~ 834 (1202)
-..|.|+|+||--+-. |......+.++|..+- ..+..||.+|.+|+. + |.-+ +..| .+
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~-L----DpAl-lRpGRfD~ 312 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI-L----DPAL-LRPGRIDR 312 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-S----CHHH-HSTTSSCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-C----CHhH-cCCCcCce
Confidence 4579999999965422 3344555666666653 125678999998762 1 3222 2211 14
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
.++.+.|+.
T Consensus 313 ~I~i~lPd~ 321 (405)
T 4b4t_J 313 KIEFPPPSV 321 (405)
T ss_dssp EEECCCCCH
T ss_pred EEEcCCcCH
Confidence 677788864
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.98 E-value=0.036 Score=56.40 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=17.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999753
No 399
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.98 E-value=0.047 Score=56.24 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 400
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.94 E-value=0.044 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998753
No 401
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.87 E-value=0.049 Score=59.60 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 402
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.82 E-value=0.34 Score=50.85 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=44.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CCHHHHHhcceEEEEe
Q 000979 772 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ---------PSIDIFEAFDELFLMK 830 (1202)
Q Consensus 772 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~---------~~~~~~~~~d~v~~l~ 830 (1202)
.+.+++++||.---.| +.+.++.+++.|..||++-++ ++.++.+++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 556666666689999999999 8888899999999885
No 403
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.75 E-value=0.044 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 404
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.74 E-value=0.051 Score=57.66 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++.++.|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999853
No 405
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.70 E-value=0.053 Score=54.34 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998853
No 406
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.66 E-value=0.05 Score=55.33 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 407
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.61 E-value=0.049 Score=54.12 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 408
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.60 E-value=0.056 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 409
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.58 E-value=0.052 Score=56.49 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999864
No 410
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.51 E-value=0.099 Score=53.63 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=27.8
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.+++.-.. ..|..++|+||+|+|||||...|+.+.
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45665444 467899999999999999999998653
No 411
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.51 E-value=0.064 Score=55.64 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+-+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
No 412
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.50 E-value=0.056 Score=58.27 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999864
No 413
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.50 E-value=0.059 Score=53.67 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999874
No 414
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.43 E-value=0.061 Score=56.44 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 415
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.42 E-value=0.063 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 416
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.41 E-value=0.059 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 417
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.36 E-value=0.069 Score=58.04 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
No 418
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.35 E-value=0.055 Score=53.34 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 419
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.34 E-value=0.11 Score=52.82 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877653
No 420
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.33 E-value=0.055 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.32 E-value=0.069 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999743
No 422
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.32 E-value=0.053 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 423
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.27 E-value=0.057 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 424
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.27 E-value=0.056 Score=57.07 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+.++.|+||+||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999753
No 425
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.27 E-value=0.066 Score=54.91 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 426
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.22 E-value=0.06 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 427
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.19 E-value=0.059 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 428
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.12 E-value=0.016 Score=60.82 Aligned_cols=49 Identities=14% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHhCCcccccccccCCcccccCccccchhhHH-HHHhcCCeEeeeeCCC
Q 000979 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALALFMDEIS 99 (1202)
Q Consensus 50 il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIA-raLv~~P~ILlLDEpT 99 (1202)
.+..|.-.+..++.+++ .+.++||||+||+++| ++++.++.++++|||.
T Consensus 91 ~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 91 LCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 44444333445556664 4456899999999999 9999999899999984
No 429
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.12 E-value=0.061 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
No 430
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.12 E-value=0.07 Score=56.00 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999743
No 431
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=92.12 E-value=0.057 Score=61.32 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|-.++|+|.+|+|||||+|.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
No 432
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.11 E-value=0.073 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999743
No 433
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.10 E-value=0.061 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 434
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.09 E-value=0.058 Score=53.66 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
No 435
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.06 E-value=0.074 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 436
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.06 E-value=0.075 Score=54.37 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
+.+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
No 437
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.06 E-value=0.063 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
No 438
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.05 E-value=0.063 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
No 439
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.03 E-value=0.083 Score=53.09 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998743
No 440
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.02 E-value=0.063 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 441
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.01 E-value=0.079 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++-.++|.||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999974
No 442
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.01 E-value=1.2 Score=60.24 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.4
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+- +-+++|+++.|.||+|+|||||.--++.
T Consensus 371 LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55554 3699999999999999999999877754
No 443
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.99 E-value=0.066 Score=54.69 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998854
No 444
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.98 E-value=0.062 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 445
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.94 E-value=0.056 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
=.++|+|++|+|||||++.+.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999753
No 446
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.93 E-value=0.065 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
No 447
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.92 E-value=0.069 Score=54.34 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998753
No 448
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.90 E-value=0.26 Score=52.51 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=46.5
Q ss_pred cCCeEeeeeCCCccc--cHHHHHHHHHHHHHHhHhCCCEEEEEecCCChH-------HHhhhcceEEecC
Q 000979 88 GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE-------TYDLFDDIILLSD 148 (1202)
Q Consensus 88 ~~P~ILlLDEpTSGL--Ds~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s-------~~~~fD~IvvL~~ 148 (1202)
.+|+++++||+|+.+ |.....+.+..+.+.+++.+.||+++.|..+.. +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 554556777888887777788999987766542 4677899999963
No 449
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.83 E-value=0.071 Score=57.77 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 450
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.80 E-value=0.08 Score=58.87 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 59999999999999999999853
No 451
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.79 E-value=0.97 Score=61.76 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.5
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 632 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 632 L~~vs--~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
|+.+- +-+++|+++.|.||+|+|||||.-.++.
T Consensus 371 LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55544 3699999999999999999999887764
No 452
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.78 E-value=0.066 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 453
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=91.73 E-value=0.072 Score=58.37 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 454
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.71 E-value=0.072 Score=56.46 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=20.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
..+|.++.|.|++||||||+.+.|+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999754
No 455
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.65 E-value=0.074 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 456
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.63 E-value=0.082 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 457
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.60 E-value=0.074 Score=61.63 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=36.4
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 773 NPSIIFMDEPTSGLD---ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 773 ~p~illlDEPtsgLD---~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
.|.++++||.=.=++ +.....+.+.+++.++.|..++++||.|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578999999988774 66777788888887777899999999886
No 458
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.59 E-value=0.076 Score=54.78 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999763
No 459
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.57 E-value=0.075 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 460
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.54 E-value=0.077 Score=52.86 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 461
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.54 E-value=0.076 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
No 462
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.50 E-value=0.089 Score=58.73 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999854
No 463
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.48 E-value=0.079 Score=52.40 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 464
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.47 E-value=0.072 Score=60.82 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~ 665 (1202)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
No 465
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.45 E-value=0.11 Score=54.66 Aligned_cols=26 Identities=46% Similarity=0.621 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 640 RPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 640 ~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.+|.++.|.|++||||||+.+.|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999753
No 466
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.43 E-value=0.091 Score=56.74 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 000979 643 VLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~g 664 (1202)
-+++|.|++||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 467
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.41 E-value=0.055 Score=59.80 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=18.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
No 468
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.39 E-value=0.08 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 469
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.34 E-value=0.081 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999985
No 470
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.33 E-value=0.1 Score=55.44 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=30.4
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q 000979 772 ANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRT-VVCTIHQP 815 (1202)
Q Consensus 772 ~~p~illlDEPtsgL-D~~~~~~v~~~l~~~~~~g~t-vi~~~H~~ 815 (1202)
.+|++|++||.-.-- +......+.+.+++..+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 578999999965432 233367788888877666655 77777754
No 471
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.26 E-value=0.19 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
-++|+|++|+|||||++.+.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998543
No 472
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.24 E-value=0.086 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 473
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.23 E-value=0.082 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 474
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.17 E-value=0.1 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.=.++++|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
No 475
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.15 E-value=0.096 Score=56.79 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 476
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.13 E-value=0.088 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999854
No 477
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.12 E-value=0.1 Score=55.17 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
++.|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 478
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.12 E-value=0.095 Score=57.66 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 000979 643 VLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 643 e~~al~G~sGaGKSTLl~~l~ 663 (1202)
-+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 479
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.11 E-value=0.094 Score=55.10 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 639 FRPGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 639 i~~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
.++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999999853
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.09 E-value=0.09 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 481
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.08 E-value=0.091 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 482
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.07 E-value=0.091 Score=53.17 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999874
No 483
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.04 E-value=0.099 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
|-.+.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 484
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.92 E-value=0.095 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 485
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=90.92 E-value=0.098 Score=57.29 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 486
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.91 E-value=0.094 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 487
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.89 E-value=0.11 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 488
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.87 E-value=0.099 Score=56.63 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 489
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.84 E-value=0.093 Score=53.20 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.84 E-value=0.12 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
+|.+++|.|++||||||+.+.|+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999763
No 491
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.83 E-value=0.098 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 492
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.78 E-value=0.16 Score=56.76 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRKT 667 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~~ 667 (1202)
++.++.|+||+|||||||...|+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997653
No 493
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.75 E-value=0.096 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 494
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.70 E-value=0.1 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGR 665 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~ 665 (1202)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 495
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.69 E-value=0.097 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 496
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.68 E-value=0.1 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 497
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.67 E-value=0.12 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++++|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 498
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.65 E-value=0.1 Score=53.56 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 000979 644 LTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g 664 (1202)
-++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 499
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.64 E-value=0.1 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 500
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.64 E-value=0.11 Score=57.72 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 000979 641 PGVLTALMGVSGAGKTTLMDVLAGRK 666 (1202)
Q Consensus 641 ~Ge~~al~G~sGaGKSTLl~~l~g~~ 666 (1202)
|...+.|.||+|+||||+.+.|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34689999999999999999998753
Done!