Query 000981
Match_columns 1202
No_of_seqs 419 out of 3467
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 12:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00192 aldehyde oxidase 100.0 7E-232 1E-236 2241.2 119.2 1157 10-1187 2-1162(1344)
2 KOG0430 Xanthine dehydrogenase 100.0 2E-233 4E-238 2077.8 92.0 1082 12-1187 1-1092(1257)
3 TIGR02969 mam_aldehyde_ox alde 100.0 1E-223 3E-228 2161.9 111.6 1094 13-1185 2-1135(1330)
4 PLN02906 xanthine dehydrogenas 100.0 3E-221 7E-226 2141.5 110.9 1080 31-1186 1-1131(1319)
5 PRK09800 putative hypoxanthine 100.0 7E-147 1E-151 1395.3 78.3 741 12-1197 1-821 (956)
6 TIGR03313 Se_sel_red_Mo probab 100.0 1E-143 2E-148 1367.6 76.0 736 16-1197 1-817 (951)
7 TIGR03311 Se_dep_Molyb_1 selen 100.0 8E-141 2E-145 1335.1 70.8 666 15-1151 2-681 (848)
8 COG4631 XdhB Xanthine dehydrog 100.0 9E-116 2E-120 977.9 44.2 565 600-1185 15-601 (781)
9 TIGR02965 xanthine_xdhB xanthi 100.0 6E-113 1E-117 1076.5 62.8 563 604-1186 1-585 (758)
10 TIGR03194 4hydrxCoA_A 4-hydrox 100.0 3E-109 6E-114 1039.8 59.5 548 608-1185 1-584 (746)
11 COG4630 XdhA Xanthine dehydrog 100.0 1E-111 3E-116 915.4 31.1 469 11-550 6-482 (493)
12 PRK09970 xanthine dehydrogenas 100.0 7E-109 1E-113 1041.1 60.5 571 603-1197 2-621 (759)
13 TIGR03196 pucD xanthine dehydr 100.0 8E-108 2E-112 1028.4 59.5 532 603-1157 2-561 (768)
14 TIGR02416 CO_dehy_Mo_lg carbon 100.0 1E-107 3E-112 1029.2 61.9 567 612-1196 1-636 (770)
15 TIGR02963 xanthine_xdhA xanthi 100.0 1E-107 3E-112 971.0 48.2 458 14-545 1-466 (467)
16 COG1529 CoxL Aerobic-type carb 100.0 7.6E-79 1.6E-83 762.3 52.2 567 602-1197 4-598 (731)
17 PF02738 Ald_Xan_dh_C2: Molybd 100.0 7.7E-79 1.7E-83 748.1 38.3 417 754-1185 17-444 (547)
18 TIGR03193 4hydroxCoAred 4-hydr 100.0 2E-54 4.3E-59 430.0 16.7 147 14-184 2-148 (148)
19 PRK09908 xanthine dehydrogenas 100.0 5.5E-54 1.2E-58 431.0 17.3 153 7-183 3-155 (159)
20 PRK09971 xanthine dehydrogenas 100.0 1.2E-52 2.5E-57 474.8 26.8 273 242-550 6-287 (291)
21 COG2080 CoxS Aerobic-type carb 100.0 6.6E-53 1.4E-57 417.3 15.7 152 11-185 1-152 (156)
22 TIGR03198 pucE xanthine dehydr 100.0 1.2E-52 2.6E-57 421.2 16.0 148 12-184 2-149 (151)
23 PRK11433 aldehyde oxidoreducta 100.0 6.6E-51 1.4E-55 427.6 18.0 161 12-185 50-214 (217)
24 TIGR03199 pucC xanthine dehydr 100.0 1E-49 2.2E-54 445.5 24.7 258 246-540 1-263 (264)
25 TIGR03195 4hydrxCoA_B 4-hydrox 100.0 2.2E-49 4.8E-54 448.1 27.4 272 240-547 4-320 (321)
26 COG1319 CoxM Aerobic-type carb 100.0 1.1E-46 2.3E-51 415.8 21.5 271 240-549 3-282 (284)
27 PRK09799 putative oxidoreducta 100.0 1.3E-45 2.9E-50 409.4 24.4 250 242-549 4-254 (258)
28 TIGR03312 Se_sel_red_FAD proba 100.0 1.5E-44 3.3E-49 400.4 24.5 251 241-549 2-253 (257)
29 PF00941 FAD_binding_5: FAD bi 100.0 1.8E-36 4E-41 317.0 11.6 165 240-421 2-171 (171)
30 PF01799 Fer2_2: [2Fe-2S] bind 100.0 1.4E-30 3E-35 231.4 6.5 75 95-182 1-75 (75)
31 PF01315 Ald_Xan_dh_C: Aldehyd 99.9 2.9E-28 6.2E-33 236.5 6.6 107 618-729 1-110 (111)
32 PF03450 CO_deh_flav_C: CO deh 99.7 9.8E-17 2.1E-21 154.3 12.1 101 439-546 2-103 (103)
33 COG1529 CoxL Aerobic-type carb 99.7 4.6E-18 9.9E-23 214.7 -0.5 432 595-1098 176-642 (731)
34 PRK12386 fumarate reductase ir 99.0 3.5E-10 7.6E-15 124.9 6.4 69 21-101 20-93 (251)
35 PRK05950 sdhB succinate dehydr 98.5 1.8E-07 4E-12 103.3 6.1 69 21-101 18-91 (232)
36 TIGR00384 dhsB succinate dehyd 98.3 7.6E-07 1.7E-11 97.6 5.8 69 21-101 15-87 (220)
37 PRK12576 succinate dehydrogena 98.3 1E-06 2.2E-11 99.7 6.4 70 21-101 25-100 (279)
38 PF13510 Fer2_4: 2Fe-2S iron-s 97.9 2.1E-05 4.6E-10 72.5 7.0 69 12-96 2-80 (82)
39 cd00207 fer2 2Fe-2S iron-sulfu 97.8 2.9E-05 6.3E-10 71.5 5.3 69 14-85 1-77 (84)
40 PF13085 Fer2_3: 2Fe-2S iron-s 97.7 9.4E-05 2E-09 71.6 8.0 70 21-101 19-94 (110)
41 PRK08493 NADH dehydrogenase su 97.7 7.1E-05 1.5E-09 95.7 7.5 96 14-127 2-102 (819)
42 PRK12385 fumarate reductase ir 97.6 5.4E-05 1.2E-09 84.2 5.1 67 21-100 25-95 (244)
43 PF00111 Fer2: 2Fe-2S iron-sul 97.4 0.00019 4.1E-09 65.3 4.8 48 16-65 1-49 (78)
44 PRK12814 putative NADPH-depend 97.3 0.00047 1E-08 87.7 7.6 92 13-125 3-101 (652)
45 PRK12577 succinate dehydrogena 97.1 0.004 8.7E-08 72.5 13.1 70 21-101 19-101 (329)
46 PRK07569 bidirectional hydroge 97.0 0.0019 4E-08 71.8 8.5 96 13-128 3-107 (234)
47 PRK13552 frdB fumarate reducta 97.0 0.0008 1.7E-08 74.7 5.2 69 21-101 24-96 (239)
48 PRK06259 succinate dehydrogena 96.9 0.0018 3.9E-08 79.7 8.1 64 21-97 21-88 (486)
49 PRK08640 sdhB succinate dehydr 96.9 0.0015 3.2E-08 73.0 6.4 68 21-101 23-101 (249)
50 PRK07570 succinate dehydrogena 96.9 0.0011 2.4E-08 73.9 5.0 70 21-100 20-103 (250)
51 PRK14652 UDP-N-acetylenolpyruv 96.8 0.0032 6.9E-08 72.4 8.7 162 234-422 29-194 (302)
52 PF01565 FAD_binding_4: FAD bi 96.5 0.0037 8.1E-08 63.3 5.7 106 242-367 3-109 (139)
53 COG0479 FrdB Succinate dehydro 96.5 0.0038 8.2E-08 68.3 5.7 69 21-101 20-92 (234)
54 PRK12575 succinate dehydrogena 96.4 0.005 1.1E-07 68.2 6.1 68 21-101 23-94 (235)
55 PRK14653 UDP-N-acetylenolpyruv 96.2 0.032 6.8E-07 64.0 11.2 138 234-400 27-165 (297)
56 PLN00129 succinate dehydrogena 96.1 0.0067 1.5E-07 68.4 5.2 68 22-101 63-135 (276)
57 PRK13905 murB UDP-N-acetylenol 96.0 0.032 6.9E-07 64.3 10.3 159 235-422 25-191 (298)
58 COG0277 GlcD FAD/FMN-containin 95.7 0.02 4.3E-07 69.9 7.6 108 241-367 33-140 (459)
59 PRK10713 2Fe-2S ferredoxin Yfa 95.7 0.021 4.4E-07 53.0 5.7 48 13-64 3-50 (84)
60 TIGR01676 GLDHase galactonolac 95.7 0.047 1E-06 67.2 10.4 159 241-422 63-227 (541)
61 PRK12436 UDP-N-acetylenolpyruv 95.6 0.094 2E-06 60.6 11.8 105 240-367 37-141 (305)
62 CHL00134 petF ferredoxin; Vali 95.3 0.035 7.6E-07 53.2 6.0 49 13-64 5-55 (99)
63 TIGR02008 fdx_plant ferredoxin 95.3 0.034 7.3E-07 53.0 5.8 48 14-64 5-53 (97)
64 TIGR01678 FAD_lactone_ox sugar 95.3 0.1 2.2E-06 63.4 11.3 158 241-421 16-179 (438)
65 PRK07860 NADH dehydrogenase su 95.2 0.033 7E-07 72.7 7.2 105 12-132 3-114 (797)
66 PLN02465 L-galactono-1,4-lacto 95.1 0.17 3.6E-06 63.0 12.4 158 241-422 98-262 (573)
67 PRK11230 glycolate oxidase sub 95.1 0.038 8.3E-07 68.1 7.0 107 242-366 58-164 (499)
68 PRK14650 UDP-N-acetylenolpyruv 94.8 0.26 5.7E-06 56.5 12.2 88 234-325 26-114 (302)
69 PTZ00305 NADH:ubiquinone oxido 94.7 0.083 1.8E-06 59.5 7.7 102 6-126 61-171 (297)
70 PRK11183 D-lactate dehydrogena 94.7 0.073 1.6E-06 64.8 7.8 110 241-368 40-154 (564)
71 TIGR00387 glcD glycolate oxida 94.7 0.033 7.1E-07 67.2 5.0 104 244-367 2-107 (413)
72 PRK13906 murB UDP-N-acetylenol 94.7 0.18 3.9E-06 58.3 10.6 153 240-420 37-194 (307)
73 TIGR00179 murB UDP-N-acetyleno 94.5 0.1 2.2E-06 59.7 8.1 139 235-400 7-147 (284)
74 TIGR01677 pln_FAD_oxido plant- 94.5 0.22 4.8E-06 62.1 11.4 108 241-367 33-143 (557)
75 TIGR01973 NuoG NADH-quinone ox 94.1 0.09 2E-06 66.6 7.3 93 16-128 1-103 (603)
76 PLN03136 Ferredoxin; Provision 94.1 0.084 1.8E-06 54.2 5.6 49 13-64 56-104 (148)
77 PLN02593 adrenodoxin-like ferr 94.1 0.13 2.9E-06 50.7 6.9 81 13-96 2-101 (117)
78 PTZ00490 Ferredoxin superfamil 94.1 0.11 2.4E-06 52.9 6.4 85 12-98 36-138 (143)
79 PRK09129 NADH dehydrogenase su 94.0 0.068 1.5E-06 69.8 6.0 102 13-135 1-112 (776)
80 PLN02805 D-lactate dehydrogena 94.0 0.099 2.2E-06 65.1 7.0 106 242-367 136-241 (555)
81 PRK11872 antC anthranilate dio 93.8 0.085 1.8E-06 62.0 5.7 48 14-64 3-53 (340)
82 PRK09130 NADH dehydrogenase su 93.7 0.15 3.3E-06 65.4 8.1 94 13-126 1-104 (687)
83 PTZ00038 ferredoxin; Provision 93.4 0.14 3E-06 54.6 5.9 50 12-64 96-145 (191)
84 PRK08166 NADH dehydrogenase su 93.0 0.14 3.1E-06 67.5 6.5 106 13-130 1-112 (847)
85 TIGR01679 bact_FAD_ox FAD-link 92.9 0.21 4.5E-06 60.5 7.2 103 241-367 13-115 (419)
86 TIGR02160 PA_CoA_Oxy5 phenylac 92.7 0.2 4.4E-06 59.0 6.6 52 11-64 262-313 (352)
87 PRK00046 murB UDP-N-acetylenol 91.4 1.2 2.7E-05 51.9 10.9 137 234-400 14-158 (334)
88 PRK10684 HCP oxidoreductase, N 91.0 0.27 5.8E-06 57.6 5.1 48 14-64 249-296 (332)
89 PRK13903 murB UDP-N-acetylenol 91.0 0.89 1.9E-05 53.7 9.3 86 234-325 26-114 (363)
90 PRK07609 CDP-6-deoxy-delta-3,4 90.8 0.25 5.5E-06 57.9 4.7 47 12-63 3-49 (339)
91 PRK14649 UDP-N-acetylenolpyruv 90.6 1.1 2.4E-05 51.5 9.6 88 234-325 14-104 (295)
92 COG0633 Fdx Ferredoxin [Energy 90.4 0.41 8.9E-06 46.1 4.9 49 16-66 7-55 (102)
93 PRK11282 glcE glycolate oxidas 90.4 0.35 7.5E-06 57.0 5.3 100 249-367 4-103 (352)
94 TIGR02007 fdx_isc ferredoxin, 90.4 0.38 8.2E-06 47.0 4.6 42 19-65 14-56 (110)
95 PRK09970 xanthine dehydrogenas 90.2 7.8 0.00017 50.7 17.8 191 785-976 457-737 (759)
96 TIGR01941 nqrF NADH:ubiquinone 89.4 0.41 9E-06 57.6 4.9 49 13-64 31-81 (405)
97 PRK05464 Na(+)-translocating N 88.2 0.55 1.2E-05 56.7 4.9 51 11-64 33-85 (409)
98 COG0812 MurB UDP-N-acetylmuram 88.0 5.2 0.00011 45.6 12.1 158 235-422 15-182 (291)
99 PLN02441 cytokinin dehydrogena 88.0 1.5 3.2E-05 54.3 8.4 107 241-366 66-179 (525)
100 PRK05713 hypothetical protein; 87.8 0.73 1.6E-05 53.5 5.5 45 15-64 3-47 (312)
101 PRK14651 UDP-N-acetylenolpyruv 87.3 3.6 7.8E-05 46.7 10.3 153 234-422 14-169 (273)
102 PRK14648 UDP-N-acetylenolpyruv 85.9 1.7 3.6E-05 51.0 6.9 114 234-367 23-139 (354)
103 COG3383 Uncharacterized anaero 85.1 1.5 3.3E-05 54.7 6.3 94 12-127 4-106 (978)
104 COG1034 NuoG NADH dehydrogenas 82.3 1.8 3.8E-05 55.1 5.4 91 13-125 1-102 (693)
105 TIGR02416 CO_dehy_Mo_lg carbon 78.5 4.1 9E-05 53.2 7.2 71 789-861 476-557 (770)
106 PRK09800 putative hypoxanthine 75.0 7 0.00015 52.2 7.9 74 786-861 662-746 (956)
107 TIGR03313 Se_sel_red_Mo probab 74.7 5.6 0.00012 53.1 6.9 73 786-860 658-741 (951)
108 TIGR02965 xanthine_xdhB xanthi 74.6 4.5 9.8E-05 52.8 6.0 72 787-860 446-528 (758)
109 KOG2282 NADH-ubiquinone oxidor 74.3 5.8 0.00013 47.6 6.1 107 4-127 23-135 (708)
110 TIGR03194 4hydrxCoA_A 4-hydrox 73.7 6.2 0.00013 51.4 7.0 74 786-861 442-526 (746)
111 TIGR02969 mam_aldehyde_ox alde 64.8 9.8 0.00021 52.7 6.3 59 786-844 1015-1084(1330)
112 TIGR03311 Se_dep_Molyb_1 selen 63.5 12 0.00025 49.6 6.3 71 788-861 594-675 (848)
113 PLN02906 xanthine dehydrogenas 62.4 16 0.00035 50.7 7.6 73 786-860 1010-1093(1319)
114 TIGR03196 pucD xanthine dehydr 61.3 15 0.00033 48.0 6.8 70 790-861 467-549 (768)
115 PF02738 Ald_Xan_dh_C2: Molybd 57.2 22 0.00047 44.8 7.0 57 788-844 319-386 (547)
116 PRK06083 sulfur carrier protei 53.0 19 0.00041 33.5 4.1 34 8-45 13-46 (84)
117 PRK07440 hypothetical protein; 52.8 18 0.00038 32.4 3.7 29 13-45 4-32 (70)
118 KOG4730 D-arabinono-1, 4-lacto 52.4 24 0.00053 42.2 5.7 81 242-325 52-132 (518)
119 COG2104 ThiS Sulfur transfer p 48.7 24 0.00052 31.5 3.9 31 12-46 1-31 (68)
120 PRK08053 sulfur carrier protei 47.9 40 0.00087 29.6 5.2 28 14-45 1-28 (66)
121 PRK00054 dihydroorotate dehydr 46.8 8.6 0.00019 43.0 1.0 16 48-63 214-229 (250)
122 cd06192 DHOD_e_trans_like FAD/ 44.3 14 0.0003 41.1 2.1 17 47-63 212-228 (243)
123 PF10437 Lip_prot_lig_C: Bacte 41.9 1E+02 0.0022 28.5 7.1 43 470-515 26-68 (86)
124 PLN00192 aldehyde oxidase 39.8 56 0.0012 45.6 7.2 73 786-860 1028-1119(1344)
125 PF10418 DHODB_Fe-S_bind: Iron 39.5 18 0.0004 28.7 1.5 17 48-64 3-19 (40)
126 TIGR01372 soxA sarcosine oxida 38.8 67 0.0014 43.6 7.6 80 11-101 10-99 (985)
127 PRK05659 sulfur carrier protei 37.8 36 0.00078 29.7 3.3 27 15-45 2-28 (66)
128 PF02594 DUF167: Uncharacteris 36.5 89 0.0019 28.6 5.7 54 1056-1117 16-69 (77)
129 PRK05863 sulfur carrier protei 35.8 37 0.00081 29.8 3.1 28 14-45 1-28 (65)
130 TIGR02911 sulfite_red_B sulfit 35.4 15 0.00033 41.5 0.7 28 34-62 205-240 (261)
131 PRK07696 sulfur carrier protei 34.3 49 0.0011 29.3 3.6 29 14-45 1-29 (67)
132 COG2871 NqrF Na+-transporting 32.9 45 0.00097 37.7 3.7 50 12-64 35-86 (410)
133 PRK08364 sulfur carrier protei 32.4 61 0.0013 28.9 3.9 31 13-45 4-36 (70)
134 COG3894 Uncharacterized metal- 32.1 45 0.00098 40.5 3.8 48 14-67 4-52 (614)
135 KOG3049 Succinate dehydrogenas 31.9 25 0.00054 37.8 1.5 56 31-97 76-135 (288)
136 TIGR01683 thiS thiamine biosyn 30.3 91 0.002 27.1 4.6 26 16-45 1-26 (64)
137 PRK08221 anaerobic sulfite red 28.7 21 0.00045 40.4 0.4 17 46-62 226-242 (263)
138 PRK13904 murB UDP-N-acetylenol 28.6 96 0.0021 35.1 5.5 98 235-367 13-111 (257)
139 cd00565 ThiS ThiaminS ubiquiti 25.6 1.3E+02 0.0029 26.1 4.8 26 16-45 2-27 (65)
140 PRK06944 sulfur carrier protei 25.5 69 0.0015 27.8 3.0 28 14-45 1-28 (65)
141 cd06221 sulfite_reductase_like 24.4 29 0.00063 38.9 0.5 17 46-62 224-240 (253)
142 cd06220 DHOD_e_trans_like2 FAD 24.3 35 0.00077 37.6 1.2 16 48-63 200-215 (233)
143 PF02594 DUF167: Uncharacteris 24.3 2.1E+02 0.0045 26.3 5.9 42 791-832 18-64 (77)
144 cd06219 DHOD_e_trans_like1 FAD 21.2 58 0.0013 36.4 2.1 29 34-63 195-228 (248)
145 PRK06488 sulfur carrier protei 20.9 94 0.002 27.1 2.9 27 14-45 1-27 (65)
No 1
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=6.7e-232 Score=2241.15 Aligned_cols=1157 Identities=74% Similarity=1.166 Sum_probs=1002.2
Q ss_pred cccEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceecccccccc
Q 000981 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVN 89 (1202)
Q Consensus 10 ~~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~ 89 (1202)
++++|+|+|||+++++++++|++|||+|||+++||||||+||++|+||||||+|+++|+.++++++++|||||+|++++|
T Consensus 2 ~~~~i~~~vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~ 81 (1344)
T PLN00192 2 SNMSLVFAVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVN 81 (1344)
T ss_pred CcceEEEEECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhC
Confidence 34579999999999997799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccc
Q 000981 90 GCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCR 169 (1202)
Q Consensus 90 g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCR 169 (1202)
|++|+|||||+++++.||||||||+++||+|||||||||||+||+||+++....+|+|+.+...+|++||+++|+|||||
T Consensus 82 g~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfCtpG~vms~~~ll~~~~~~~~~~p~~~~~~~~~~~i~~~l~gnlCR 161 (1344)
T PLN00192 82 GCSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGMCISLFSALVNADKTDRPEPPSGFSKLTVVEAEKAVSGNLCR 161 (1344)
T ss_pred CCEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCCChHHHHHHHHHHHhcccccCCCcccccCCCCHHHHHHHhcCCcee
Confidence 99999999999656789999999999999999999999999999999652100013331111134799999999999999
Q ss_pred cCCChhHHHHHHHhhhcccccccccccccccCCcccccccCCCCCCCCCCccCCCcccccc--cCCceeecCCceEEecC
Q 000981 170 CTGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE--NSSAMLLDVKGSWHSPI 247 (1202)
Q Consensus 170 Ctgy~~i~~a~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~~~~~~~~~~~~~~~P~ 247 (1202)
|||||||++|+++++.+.++++++.++|++++.+.....++++++++++++|+| |+|+.. ....+.+..+++|++|+
T Consensus 162 CtgY~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~ 240 (1344)
T PLN00192 162 CTGYRPIVDACKSFAADVDIEDLGLNSFWKKGESEEAKLSKLPPYNHSDHICTF-PEFLKKEIKSSLLLDSSRYRWYTPV 240 (1344)
T ss_pred CCCCHHHHHHHHHHHhhccchhcccccccccCCcchhhhhhcccCCCccccccC-hhhhhcccCccceecCCCceEECcC
Confidence 999999999999999877777766455655332223344688999999988889 666532 22223444489999999
Q ss_pred CHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHHHHHhh
Q 000981 248 SVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETK 327 (1202)
Q Consensus 248 sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~ 327 (1202)
||+||+++|+++.. ..+++++||||||+++++....|+.+|||++|+||+.|+.++++|+|||+|||+++++.+....
T Consensus 241 sl~ea~~ll~~~~~-~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~~l~~~~- 318 (1344)
T PLN00192 241 SVEELQSLLESNNF-DGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIEALREES- 318 (1344)
T ss_pred CHHHHHHHHHhCCC-CCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHHHHHhhc-
Confidence 99999999995311 0248999999999999877567899999999999999999999999999999999998866541
Q ss_pred hhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhhhhcCCCC
Q 000981 328 EFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPL 407 (1202)
Q Consensus 328 ~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF~~~~~l 407 (1202)
.+. .+||.|++++++|||+||||+|||||||++++|.+++||++|+|+||||+|+|.+.+|+|+||++|||.++.+
T Consensus 319 -~~~---~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~Asp~~p~sD~~p~LlAl~A~v~l~s~~g~R~vpl~dFf~~~~l 394 (1344)
T PLN00192 319 -KSE---YVFKKIADHMEKIASRFVRNTGSIGGNLVMAQRKQFPSDIATILLAAGSTVNIQNASKREKLTLEEFLERPPL 394 (1344)
T ss_pred -ccc---chHHHHHHHHHHhcChhhccceechhhhcccCCCCCchhHHHHHHHhCcEEEEEeCCceEEEeHHHHhccCcc
Confidence 111 1589999999999999999999999999999986667999999999999999999999999999999998889
Q ss_pred CCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEeccCC-c
Q 000981 408 DSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGT-K 486 (1202)
Q Consensus 408 ~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv~~-~ 486 (1202)
+++|||++|.||.+... ++.....+|.+||+++|++++|||+||+||.++++.+...++++|+++||+||||++ +
T Consensus 395 ~~~Eil~~I~iP~~~~~----~~~~~~~~f~~yk~~~Rr~~~diA~V~aA~~v~~~~~~~~~~~~i~~aria~Ggvap~~ 470 (1344)
T PLN00192 395 DSKSLLLSVEIPSWTSS----SGSDTKLLFETYRAAPRPLGNALPYLNAAFLAEVSQDASSGGIVVNDCRLAFGAYGTKH 470 (1344)
T ss_pred CCcceEEEEEccCCccc----cccCcccceeeeeecccccccchhhheeeEEEEEEecccCCCCeEeEEEEEEecCCCCc
Confidence 99999999999965410 000125678899999995589999999999999852100113489999999999999 7
Q ss_pred ccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCcHHHHhHhHHHHHHHHHHHHhhhcc-CCCccccCCCCCCC
Q 000981 487 HAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKN-GISRDWLCGYSNNV 565 (1202)
Q Consensus 487 ~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~~s~~YR~~la~~L~~k~l~~~~~~~~-~~~~~~~~~~~~~~ 565 (1202)
|+|+.++|++|.||+|+++++++|++++.+++.|.++.+|++||++|+.+||+|||+++.+++. ..++.+.-+ +
T Consensus 471 -P~ra~~~E~~L~Gk~~~~~~l~~A~~~l~~~~~p~~~~~s~eYRr~la~~l~~r~~~~~~~~~~~~~~~~~~~~----~ 545 (1344)
T PLN00192 471 -AIRARKVEEFLTGKVLSDSVLYEAVRLLKGIVVPEDGTSHPEYRSSLAVGFLFDFLSPLIESNAKSSNGWLDGG----S 545 (1344)
T ss_pred -eecHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccccccc----c
Confidence 9999999999999999999999999999999999988899999999999999999999998762 122222100 0
Q ss_pred CcccccccccccccccccccccCCccccccccCCCCCCCCCccccccccccCccceeccccCCCCCCceEEEEEecCCCC
Q 000981 566 SLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPL 645 (1202)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~ah 645 (1202)
...+.+. .+ ....+++|++++.|.|++++++++|||+++|+|++.|+||+|+|++|++.+|||||++|||||++|
T Consensus 546 ~~~~~~~---~~--~~~~~~~~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ah 620 (1344)
T PLN00192 546 NTKQNPD---QH--DDVKKPTLLLSSKQQVEENNEYHPVGEPIKKVGAALQASGEAVYVDDIPSPKNCLYGAFIYSTKPL 620 (1344)
T ss_pred ccccccc---cc--ccccccCCCCCcceeeecccccCcCCCCCcChhhHhhcccceecccccCCCCCCEEEEEEecCCCc
Confidence 1011000 01 134678999999999998899999999999999999999999999999856899999999999999
Q ss_pred ceeccCCCcccCCCCCeEEEEEcCCCCCCCCCCCCcccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEe
Q 000981 646 ARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYE 725 (1202)
Q Consensus 646 a~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~ 725 (1202)
|+|++||+++|++||||++|+|++|+|..+.|.+......++|+|++++|+|+|||||+|||+|+++|++|+++|+|+|+
T Consensus 621 ArI~sID~s~A~~~pGV~aV~t~~Dip~~~~~~g~~~~~~~~~~la~~~Vr~~Gq~Va~VvA~t~~~A~~Aa~~V~VeYe 700 (1344)
T PLN00192 621 ARVKGIKFKSNLVPQGVLAVITFKDIPKGGQNIGSKTIFGPEPLFADEVTRCAGQRIALVVADTQKHADMAANLAVVEYD 700 (1344)
T ss_pred eEEEEEEhHHhhcCCCcEEEEchHHcCcccccCCCCCCCCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhccCEEEEe
Confidence 99999999999999999999999999842333332112358999999999999999999999999999999999999994
Q ss_pred cCCCCCcccCHHHHhhcCCCcccCCccccCCCCCcccccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEe
Q 000981 726 MGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYS 805 (1202)
Q Consensus 726 ~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~ 805 (1202)
+++|.|+++|+++|+++++++..+........||++++|++|++++||++|++++|+|+||||++|+|+|++||.|+||+
T Consensus 701 ~~~l~p~v~~i~~Al~~~s~~~~~~~~~~~~~GD~~~af~~a~~vv~e~~~~~~~q~H~~mEp~~~vA~~~~dg~l~V~~ 780 (1344)
T PLN00192 701 TENLEPPILTVEDAVKRSSLFEVPPFLYPKPVGDISKGMAEADHKILSAEIKLGSQYYFYMETQTALALPDEDNCIVVYS 780 (1344)
T ss_pred cCCCCCcccCHHHHhcCCCCcccChhhcccccCCHHHHhccCCeEEEEEEEEECCEeeeeccCceEEEEEcCCCCEEEEE
Confidence 22233889999999999887542222223467999999999999745999999999999999999999999888899999
Q ss_pred CCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEE
Q 000981 806 SIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKI 885 (1202)
Q Consensus 806 sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~ 885 (1202)
|||+|+.+|..||++||||++||+|+++++|||||+|.++....+++||++|+++||||||+|||+|+|.++++|||+.+
T Consensus 781 sTQ~p~~~r~~vA~~Lgip~~~VrV~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVr~~~sR~Edm~~~~~R~~~~~ 860 (1344)
T PLN00192 781 STQCPEYVHSVIARCLGIPEHNVRVITRRVGGGFGGKAVKSMPVATACALAAFKLQRPVRMYLNRKTDMIMAGGRHPMKI 860 (1344)
T ss_pred CCCCHHHHHHHHHHHhCCChHHEEEEecccccCCCccccccchHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCcCceEE
Confidence 99999999999999999999999999999999999998777788899999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcEEEEEEEEEeeCCCCCCCCcchhhhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHH
Q 000981 886 TYSVGFKSNGKITALQLNILIDAGLSPDVSPIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEA 965 (1202)
Q Consensus 886 ~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~ 965 (1202)
+||+|+++||+|++++++++.|+|+|.+++.++...+.+..++|+|||++++++.|+||++|+|||||||.||++|++|+
T Consensus 861 ~~k~g~~~dG~I~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~pq~~fa~E~ 940 (1344)
T PLN00192 861 TYSVGFKSDGKITALHLDILINAGISPDISPIMPRNIIGALKKYDWGALSFDIKVCKTNLSSRSAMRAPGEVQGSYIAEA 940 (1344)
T ss_pred EEEEEECCCCCEEEEEEEEEEecccCCCcchHHHHHHhhcCCCcCCCceEEEEEEEECCCCCCCcccCCCHHHHHHHHHH
Confidence 99999999999999999999999999887665455555677999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCccccCCHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeeeEee
Q 000981 966 VIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRL 1045 (1202)
Q Consensus 966 ~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~ 1045 (1202)
+||++|++|||||+|||++|+++++....+|..+.|......+++||+++++.++|++|++++++||+.|+|+|||+|++
T Consensus 941 ~mD~lA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~krGig~~ 1020 (1344)
T PLN00192 941 IIEHVASTLSMDVDSVRKINLHTYESLKLFYGDSAGEPSEYTLPSIWDKLASSSEFKQRTEMVKEFNRSNKWKKRGISRV 1020 (1344)
T ss_pred HHHHHHHHhCcCHHHHHHhcCCCccccccCCCCcccccCCCcHHHHHHHHHHhcChHHHHHHHHHHhhcCCceEEEEEEE
Confidence 99999999999999999999997654433454444433345899999999999999999888889999999999999999
Q ss_pred eeeecccccccceEEEEeeCCcEEEEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCc
Q 000981 1046 PIVHEVTLRSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTA 1125 (1202)
Q Consensus 1046 ~~~~~~~~~~~~a~V~i~~DGsV~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~ 1125 (1202)
+++|+.++.+..+.|+|++||+|+|.+|++|||||++|+++||+|++||+++++.-+||+|+|+|..+||+.+|++++|+
T Consensus 1021 ~~~~~~~~~~~~a~v~i~~DGsv~v~~G~~e~GQG~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~ 1100 (1344)
T PLN00192 1021 PIVHEVMLRPTPGKVSILSDGSIAVEVGGIEIGQGLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTA 1100 (1344)
T ss_pred EEEEeccccCCceEEEEeCCceEEEEECCCCCCCCHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCc
Confidence 99999877788999999999999999999999999999999999999997555555669999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhCCCceEEEEeeecC
Q 000981 1126 GSTTSEASCQVVRDCCNILVERLTLLRERLQGQMGNVEWETLIQQVHICSSEALSTEFILFN 1187 (1202)
Q Consensus 1126 gS~~t~~~g~Av~~Ac~~l~~~l~~~a~~~~~~~~~~~~~elv~~a~~~~v~l~a~~~~~~~ 1187 (1202)
|||+|+++|.||++||++|++||++++++++..++.++|.+++..+|..+++|++++||++.
T Consensus 1101 gSr~t~~~G~Av~~Ac~~l~~rl~~~a~~~~~~~~~~~~~~~~~~a~~~~~~L~a~~~~~~~ 1162 (1344)
T PLN00192 1101 GSTTSESSCEAVRLCCVILVERLKPIKERLQEQMGSVTWDMLISQAYMQSVNLSASSYYTPD 1162 (1344)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHhcCCCCCeEEEEEECCC
Confidence 99999999999999999999999999988865556799999999998888999999999753
No 2
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-233 Score=2077.83 Aligned_cols=1082 Identities=43% Similarity=0.699 Sum_probs=990.9
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCc
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 91 (1202)
|.+.|+|||++++++.+||++||+.|||++++|||||.||+||+||||||++++||+.+ ++.+++|||||+|+++++|+
T Consensus 1 ~~l~F~VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~~dp~~-~~~~~avNsCLt~l~s~~g~ 79 (1257)
T KOG0430|consen 1 MELVFAINGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSKYDPEL-KVRHWAVNSCLTLLNSVHGL 79 (1257)
T ss_pred CceEEEECCEEeeEecCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEeccCCCc-eeEEeehhhhhhhcccccce
Confidence 46899999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred eEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCC-CCCCCCCCCCHHHHHHHHhCCcccc
Q 000981 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRP-EPPPGLSKLTISEAEKAIAGNLCRC 170 (1202)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~-~~~~~~~~~t~~~i~~~l~gnlCRC 170 (1202)
+|||+||||++..++||||++|+.+||+|||||||||||+||+||.++ | .| |++||+++|+||||||
T Consensus 80 ~VtT~EGlGn~~~g~HPiq~RlA~~hgsQCGFCtPG~vmsmYalL~n~-----~~~~-------T~~eie~a~~GNLCRC 147 (1257)
T KOG0430|consen 80 EVTTSEGLGNRRDGYHPIQERLAKMHGSQCGFCTPGFVMSMYALLRNS-----KNSP-------TMEEIENAFGGNLCRC 147 (1257)
T ss_pred EEEeeecccccccCcCcHHHHHhhccCCcccCCCccHHHHHHHHHHhC-----CCCC-------CHHHHHHhhccceeee
Confidence 999999999988999999999999999999999999999999999653 3 33 6999999999999999
Q ss_pred CCChhHHHHHHHhhhcccccccccccccccCCcccccccCCCCCCCCCCccCCCcccccccCCceeecC-CceEEecCCH
Q 000981 171 TGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDV-KGSWHSPISV 249 (1202)
Q Consensus 171 tgy~~i~~a~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~-~~~~~~P~sl 249 (1202)
||||||+||+|+||.+.++|+++.+..|++ ++.....++ ++|||+++. +|||++....+. ..+.. +.+|+.|.||
T Consensus 148 TGYRPIldA~kSFa~d~~~~~~g~~~~~~~-~~~~~~~~~-~~~dp~~~~-i~~pe~~~~~~~-~~~~~~~~~W~~P~sl 223 (1257)
T KOG0430|consen 148 TGYRPILDAMKSFAVDSDICGPGCDGFSIA-EEKDIEDLS-PPYDPKKEL-IFPPELLKRKKT-TLLGNDGIRWYWPVSL 223 (1257)
T ss_pred cCCchHHHHHhhhccCCCccccCccccccc-ccccccccc-CCCCCccCc-ccChHHhccccc-cccCCCCcEEeCcccH
Confidence 999999999999999999998875444443 444455566 899999977 677777655333 34444 8999999999
Q ss_pred HHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHHHHHhhhh
Q 000981 250 QELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEF 329 (1202)
Q Consensus 250 ~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~ 329 (1202)
+|++++++ +.+.++||+|||..|+++...+++.+||+++||||+.+..++++|+|||++||+++++.|++..+ .
T Consensus 224 ~eL~~~~~-----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~l~~~~~-~ 297 (1257)
T KOG0430|consen 224 EELFELKA-----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMELLRKLVK-R 297 (1257)
T ss_pred HHHHHHHh-----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHHHHHHHh-C
Confidence 99999999 57999999999999998766679999999999999988889999999999999999999888765 3
Q ss_pred hhhhhhhHHHHHHHHHHhcccccccccccCCccccccC-CCCCCchHHHHHhcCcEEEEEeCCc-eEEEehhhhhcCCCC
Q 000981 330 HSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR-KHFPSDVATVLLGAGAMVNIMTGQK-CEKLMLEEFLERPPL 407 (1202)
Q Consensus 330 ~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p-~~~~SD~~~~L~al~A~v~i~s~~g-~R~vpl~dF~~~~~l 407 (1202)
+. .++|+.+.+|+++||++||||.|||||||+.++| ..||||++++|+|+||+|++.+..+ ..++.+.+|.... |
T Consensus 298 ~~--~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~~~f~SDl~~~l~a~~a~v~~~~~~~~~~~~~l~~y~~~~-l 374 (1257)
T KOG0430|consen 298 PG--FEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSPEFPSDLFILLEALDAKVTILNNSGDLEKVFLEEYLGSS-L 374 (1257)
T ss_pred cH--HHHHHHHHHHHHHhcccceeccccccceeEeccCCCCCchhHHHHHHhhccEEEEeecCCccceeeHhhhhccc-c
Confidence 32 2789999999999999999999999999988887 6689999999999999999998655 8889999998655 9
Q ss_pred CCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEeccCCcc
Q 000981 408 DSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKH 487 (1202)
Q Consensus 408 ~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~ 487 (1202)
.++|||.+|.||.+. .+|.+||+++| +++|+|+||++|+..+ .+|+++||+|||++|.
T Consensus 375 ~~~~illsv~ip~~~------------~~f~~~k~a~R-~e~a~a~vNa~fl~e~--------~~V~~~~i~fGg~~p~- 432 (1257)
T KOG0430|consen 375 GAKEILLSVVLPASR------------KYFESYKQAPR-RENAIAYVNAAFLAEV--------GKVSSARICFGGIAPD- 432 (1257)
T ss_pred CcceEEEEEEccCcH------------HHHHHHHhccc-ccchhhhhhHHhhhcc--------ceeeeeeEeecCcCcc-
Confidence 999999999999975 27899999999 6899999999887765 2899999999999999
Q ss_pred cccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCcHHHHhHhHHHHHHHHHHHHhhhccCCCccccCCCCCCCCc
Q 000981 488 AIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSL 567 (1202)
Q Consensus 488 p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~~s~~YR~~la~~L~~k~l~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1202)
.+++.++|+.|.||.|+++.+++|+.+|..++.|..+.++++||++||.+||||||+.+.+..+.. ..+.+|
T Consensus 433 ~i~a~~~~~~~~gk~~~~~ll~~a~~lL~~~l~~~~p~~~~~yR~~La~sfffKF~l~~~~~~~~~-~~~~~g------- 504 (1257)
T KOG0430|consen 433 FIHAKKTEELLLGKPWEEELLEDAFGLLQSDLVPDEPGGMPEYRKKLALGFFFKFLLKVAHKVKNG-NKFITG------- 504 (1257)
T ss_pred hhhhhhHHHHhhcccccHHHHHHHHHhhhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHhhhcccc-CCccCC-------
Confidence 999999999999999999999999999999999988889999999999999999999999987422 122222
Q ss_pred ccccccccccccccccccccCCccccccccCCCCCCCCCccccccccccCccceeccccCCCCCCceEEEEEecCCCCce
Q 000981 568 KDSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLAR 647 (1202)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~ 647 (1202)
.....+|+.++.|.+++..+.++||+|++++.+..|+||||.|+|||+.+++.||++||.|+.|||+
T Consensus 505 -------------~~~~~~~~ls~~Q~~~~~q~~~pVG~pi~~~~a~~qaSGEAvY~dDip~~~n~lh~aFV~St~p~A~ 571 (1257)
T KOG0430|consen 505 -------------GSLLARPLLSGGQQFETTQEHYPVGRPVEKLEALIQASGEATYVDDIPTPPNTLHAAFVLSTKPHAK 571 (1257)
T ss_pred -------------CccccccccccceeecCCCCCCcCcchhhhhhhhhhcccceEEecCCCCCCCeeEEEEEEcccCCcE
Confidence 1233466677777777777799999999999999999999999999999999999999999999999
Q ss_pred eccCCCcccCCCCCeEEEEEcCCCCCCCCC---CCCcccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEE
Q 000981 648 IKGIEFKSESVPDVVTALLSYKDIPEGGQN---IGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDY 724 (1202)
Q Consensus 648 I~sID~s~A~~~pGVv~vvt~~Dip~~g~n---~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey 724 (1202)
|+|||+|+|+++|||+++++++|+| |.| ++....+.|+++||+|+|+|+||||++|||+|.++|++||++|+|+|
T Consensus 572 I~sID~seAl~~~GVv~~~~akDiP--g~n~~~i~~~~~~~de~lFA~~~v~~~GQ~ig~ivAdt~~~A~rAA~lVkv~Y 649 (1257)
T KOG0430|consen 572 ILSIDASEALKLPGVVAFFSAKDIP--GNNMKNIGNMFFPEDEELFATDVVTCVGQPIGVIVADTHELAKRAAKLVKVEY 649 (1257)
T ss_pred EeeecchhhcCCCceEEEEecccCC--CCCccccccccCCCccceeecceeEEcCcEEEEEEeCCHHHHHHhhhceEEEe
Confidence 9999999999999999999999999 544 22223357999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCHHHHhhcCCCcccCCccccCCCCCccccc--ccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEE
Q 000981 725 EMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGM--NEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLV 802 (1202)
Q Consensus 725 ~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~~af--~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~ 802 (1202)
++++|+++++++|++..++++.++ .+..+++.+.+ .++|.+ +||+++++.|+|||||||+++|+|++| +|+
T Consensus 650 --~~l~p~I~t~e~Ai~~~s~~~~~~---~~~~~~~~~~~~~~~~d~i-~~Ge~~mG~QeHFYmEtQttl~vP~e~-el~ 722 (1257)
T KOG0430|consen 650 --EELPPPILPSEDAVKDKSLSETEP---RLRKGDVGKSFQLEECDKI-LEGELDMGGQEHFYMEPQTTLVVPFEG-ELQ 722 (1257)
T ss_pred --ccCCCceecHHHHHhhhcccCCCc---cccccCcccccccccccee-EEEEEEecceeEEEeccceeEEeecCC-eEE
Confidence 778788999999999998776443 34556665555 567875 999999999999999999999999987 899
Q ss_pred EEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCc
Q 000981 803 VYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHP 882 (1202)
Q Consensus 803 V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~ 882 (1202)
||+|||||..+|..||++||||.|||+|+++|+|||||||.++...++++|||+|+|+|||||++++|++||.++|+|||
T Consensus 723 v~~STQ~~~~tQ~~VA~~Lgipa~~V~v~trRvGGGFGGK~trs~~VA~a~ALaA~Kl~RPvr~~l~r~~dM~itG~Rhp 802 (1257)
T KOG0430|consen 723 VYSSTQWPDFTQSVVAHVLGLPANKVQVKTRRLGGGFGGKETRSNPVAAAAALAAYKLNRPVRFVLSRESDMIITGKRHP 802 (1257)
T ss_pred EEEcCcCcHHHHHHHHHHhCCCccceEEEEEeeccccccccccccHHHHHHHHHHHHhCCCEEEEecchhhhhhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCcchhhhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHH
Q 000981 883 MKITYSVGFKSNGKITALQLNILIDAGLSPDVSPIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFI 962 (1202)
Q Consensus 883 ~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa 962 (1202)
++.+|++||++||+|+|+++++|.|+|+..|.|+++.++++++.++|++||+|+++++|+||.|++|||||||.||++++
T Consensus 803 ~~~~Ykvgf~~~GkI~aL~~~~~~naG~s~d~S~~~~~~~~~~~n~Y~~~~~r~~G~~ckTN~pSnTa~Rg~G~pQG~~i 882 (1257)
T KOG0430|consen 803 FHGKYKVGFKSDGKILALDLEFYENAGWSKDESPSVLRAMFHSDNVYEIGDVRFDGYVCKTNLPSNTAFRGPGSPQGILI 882 (1257)
T ss_pred eEEeEEEEEccCCeEEEEehhhhhccCCCcCcchHHHhhhhhhhheecccceeeeeeEEecCCCCcchhcCCCChhhHHH
Confidence 99999999999999999999999999999999996668999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCccccCCHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeee
Q 000981 963 AEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGV 1042 (1202)
Q Consensus 963 ~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGi 1042 (1202)
.|++|+++|.++|+||.|+|++|+++.++.+.+. |.+..+.+++||+++...++|++|+.++++||+.|+||||||
T Consensus 883 ~E~iie~VA~~~g~d~eeVR~~N~y~eg~~~~~~----~~~~~~~l~~~w~~~~~sS~y~~Rk~ev~~FN~~N~WrKRGi 958 (1257)
T KOG0430|consen 883 TENIIERIAFELGKDPEEVRKINFYVEGSLTYYH----GELQHCTLPQLWPECLVSSKFEKRKSEIEEFNKENRWKKRGL 958 (1257)
T ss_pred HHHHHHHHHHHhCCCHHHHhhhhhhhcccccccC----CCcccCcHHHHHHHHHHhchHHHHHHHHHHhhhcChhhhcCc
Confidence 9999999999999999999999999988876432 555667999999999999999999999999999999999999
Q ss_pred Eeeeeeecccccc-cceEEEEeeCCcEEEEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCC
Q 000981 1043 CRLPIVHEVTLRS-TPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQG 1121 (1202)
Q Consensus 1043 a~~~~~~~~~~~~-~~a~V~i~~DGsV~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~ 1121 (1202)
++++++|++++.. ..|.|+|+.||||.|.||++|||||+||||+||||+.||| |++.|++.++||+.+||+
T Consensus 959 ~~vp~~f~i~~~~~~~a~V~Iy~DGSV~v~hgGiEmGQGL~TK~~Qvaa~~l~i--------p~~~v~v~~tsT~~v~na 1030 (1257)
T KOG0430|consen 959 AMVPMKFGISFTGQAPALVHIYTDGTVVVTHGGIEMGQGLNTKVAQVAAYALGI--------PLSSVFVSETSTDKVPNA 1030 (1257)
T ss_pred eEeeeecceeccCCCceEEEEEcCCeEEEEECcEEcccchhHHHHHHHHHHhCC--------cccceEEeecccccccCC
Confidence 9999999999864 9999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhCCCceEEEEeeecC
Q 000981 1122 GFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQGQMGNVEWETLIQQVHICSSEALSTEFILFN 1187 (1202)
Q Consensus 1122 ~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~a~~~~~~~~~~~~~elv~~a~~~~v~l~a~~~~~~~ 1187 (1202)
++|+||.++++.|.||++||++|.+||+|++.+. ...+|.|||.+||.+.|+|||+.||+++
T Consensus 1031 ~~Ta~S~~Sd~~g~AV~~~C~~l~~RL~Pv~~k~----~~~tw~~~i~~AY~q~V~LsAs~~~~~~ 1092 (1257)
T KOG0430|consen 1031 SPTAASVSSDMYGAAVLDACETINARLEPVKSKH----NFNTWEELIQAAYGQSINLSASDWYKPE 1092 (1257)
T ss_pred CccccccccccccHHHHHHHHHHHHhhhhhhhhc----CCccHHHHHHHHhhCccceeeeccccCC
Confidence 9999999999999999999999999999999865 3489999999999999999999999864
No 3
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=1.2e-223 Score=2161.91 Aligned_cols=1094 Identities=31% Similarity=0.507 Sum_probs=965.7
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCce
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCL 92 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 92 (1202)
.|+|+|||+++++.+++|+++||+|||+++||||||.||++|+||||||+|+.+|+.+++++|++|||||+|+++++|++
T Consensus 2 ~~~~~~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 81 (1330)
T TIGR02969 2 ELLFYVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAA 81 (1330)
T ss_pred cEEEEECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCE
Confidence 48999999999776699999999999999999999999999999999999999999899999999999999999999999
Q ss_pred EEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCC
Q 000981 93 ITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTG 172 (1202)
Q Consensus 93 i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRCtg 172 (1202)
|+|||||++.++.|||||+||+++||+|||||||||||++++||++ +|+| |++||+++|+||||||||
T Consensus 82 v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfCtpG~vm~~~~ll~~-----~~~p-------~~~~i~~~l~gnlCRCtg 149 (1330)
T TIGR02969 82 VTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRN-----HPEP-------TLDQLTDALGGNLCRCTG 149 (1330)
T ss_pred EEecCCcCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHHc-----CCCC-------CHHHHHHHhcCCcccCCC
Confidence 9999999864568999999999999999999999999999999953 5666 499999999999999999
Q ss_pred ChhHHHHHHHhhhccc--cccccccccccc---C--Cc--------ccccccCCCCCCCCCCccCCCccccccc---CCc
Q 000981 173 YRPIADACKSFAADVD--IEDLGINSFWAK---G--ES--------KEVKISRLPPYKHNGELCRFPLFLKKEN---SSA 234 (1202)
Q Consensus 173 y~~i~~a~~~~~~~~~--~~~~~~~~c~~~---~--~~--------~~~~~~~~~~~~~~~~~~~~p~~l~~~~---~~~ 234 (1202)
|++|++|+++++.+.. +++++.+||+.+ + ++ ..+..+++.++++.+++ +||++|.... +..
T Consensus 150 Y~~i~~a~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fp~~l~~~~~~~~~~ 228 (1330)
T TIGR02969 150 YRPIIDACKTFCKTSGCCQSKENGVCCLDQGINGLPEFEEGDETSPELFSEEEFLPLDPTQEL-IFPPELMRMAEKQPQR 228 (1330)
T ss_pred CHHHHHHHHHHhhccCCchhccccCccccccccccccccccccccccccchhcccCCCccccc-cCChhHhhcccccccc
Confidence 9999999999987643 233333455411 1 00 11222355567777654 8999987431 122
Q ss_pred -eeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceE-eee-cccCCeeeeCCCcccccceeecCCcEEEc
Q 000981 235 -MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIG 310 (1202)
Q Consensus 235 -~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IG 310 (1202)
+.+.+ +.+|++|+||+||+++|++ ++++++|||||||++ ++. ...++.+|||++|+||+.|+.++++|+||
T Consensus 229 ~~~~~~~~~~~~~P~tl~ea~~ll~~-----~~~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IG 303 (1330)
T TIGR02969 229 TRVFYSERMMWISPVTLKELLEAKFK-----YPQAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLG 303 (1330)
T ss_pred eeeecCCCceEECCCCHHHHHHHHHh-----CCCCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEe
Confidence 55555 6899999999999999994 688999999999999 444 25778999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeC
Q 000981 311 ATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTG 390 (1202)
Q Consensus 311 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~ 390 (1202)
|+|||++|++.|.+.+.++++...+.+|.|++++++|||+||||+|||||||++++|+ ||++|+|+||||+|+|.+.
T Consensus 304 A~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP~---sD~~p~LlAl~A~v~l~s~ 380 (1330)
T TIGR02969 304 AGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHLD---SDLNPLLAVGNCTLNLLSK 380 (1330)
T ss_pred ccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCCc---hhHHHHHHHcCcEEEEecC
Confidence 9999999999888776655666667899999999999999999999999999999999 9999999999999999999
Q ss_pred CceEEEehhhhhc----CCCCCCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCC
Q 000981 391 QKCEKLMLEEFLE----RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCK 466 (1202)
Q Consensus 391 ~g~R~vpl~dF~~----~~~l~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~ 466 (1202)
+|+|+||++|||. +++|+++|||++|.||.+.. +..+.+||+++| +++|||+||+||.+++++
T Consensus 381 ~g~R~vpl~dff~~~~~~t~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~l~~-- 447 (1330)
T TIGR02969 381 EGKRQIPLSEQFLSKCPDADLKPQEILVSVNIPYSRK----------WEFVSAFRQAQR-QQNALAIVNSGMRVFFGE-- 447 (1330)
T ss_pred CceEEEehHHhhhcccccccCCCCceEEEEEecCCCC----------ccceeEEEEcCC-ccccHHHhhheEEEEEEc--
Confidence 9999999999883 78999999999999997643 456789999999 799999999999999951
Q ss_pred CCCCceeeeeEEEEeccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCC-CCCC-CcHHHHhHhHHHHHHHHHH
Q 000981 467 TGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVP-EDGT-SIPAYRSSLAVGFLYEFFG 544 (1202)
Q Consensus 467 ~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p-~~~~-~s~~YR~~la~~L~~k~l~ 544 (1202)
++++|+++||+||||+++ |+|+.++|++|.||+|+++++++|++++.+++.| .++. +|++||++|+.+||+|||+
T Consensus 448 --~~~~i~~aria~Ggvap~-p~ra~~~E~~L~Gk~~~~~~~~~A~~~l~~~~~p~~~d~r~sa~YRr~la~~ll~kf~~ 524 (1330)
T TIGR02969 448 --GDGIIRELSISYGGVGPT-TICAKNSCQKLIGRPWNEEMLDTACRLILDEVSLAGSAPGGKVEFKRTLIISFLFKFYL 524 (1330)
T ss_pred --CCCEEeEEEEEEEcCcCc-eecHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 136999999999999999 9999999999999999999999999999999976 5545 8999999999999999999
Q ss_pred HHhhhccCCCccccCCCCCCCCcccccccccccccccccccccCCccccccccCC----CCCCCCCccccccccccCccc
Q 000981 545 SLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLSR----EYYPVGEPITKSGAALQASGE 620 (1202)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~----~~~~iGk~~~r~d~~~kvtG~ 620 (1202)
++..++....+... +..+. +..+ ....+++|++++.|.|+... ..++|||+++|+|++.||||+
T Consensus 525 ~~~~~~~~~~~~~~---~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGk~v~r~d~~~kvtG~ 592 (1330)
T TIGR02969 525 EVSQILKRMDPGHY---PSLAD-------KYES--ALEDLHSKHHWSTLKHQNVDSMQLPQDPIGHPIMHLSGVKHATGE 592 (1330)
T ss_pred HHhhhhcccccccc---ccCCh-------hhcc--ccccccCCCCccccceecccccccccCcCCCCCcChhhHhhcccc
Confidence 99987742111100 00111 0111 23567889999999887422 228999999999999999999
Q ss_pred eeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCCCCCcccCCCcccccCCceeecCC
Q 000981 621 AIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQ 700 (1202)
Q Consensus 621 a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~~~~~~~~~a~~~V~y~Gq 700 (1202)
++|++|++.+|||||+++||||++||+|++||+|+|++||||++|+|++|+| +.|. +.++++|++++|||+||
T Consensus 593 a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~~~pGV~~V~t~~Dvp--~~~~-----~~~~~~la~~~Vr~~Gq 665 (1330)
T TIGR02969 593 AIYCDDMPAVDQELFLTFVTSSRAHAKIVSIDLSEALSLPGVVDIITAEHLQ--DANT-----FGTEKLLATDKVHCVGQ 665 (1330)
T ss_pred ccccCCCCCCCCCEEEEEEecCCCceEEEeeeHHHHhcCCCeEEEEeHHHCC--CCCC-----CCCeeecCCCeEEEcCC
Confidence 9999999745899999999999999999999999999999999999999998 4332 24789999999999999
Q ss_pred eEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCCcccCCccccCCCCCcccccccCCEeEEEEEEEeCc
Q 000981 701 PVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGS 780 (1202)
Q Consensus 701 pVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~~af~~a~~vvve~~~~~~~ 780 (1202)
|||+|||+|+++|++|+++|+|+| |+|.|+++|+++|+++++++.... ...+||++++|++|+++ ||++|++++
T Consensus 666 pva~VvAet~~~A~~Aa~~V~VeY--e~l~~~v~d~~~Al~~~a~~~~~~---~~~~Gdv~~af~~a~~v-ve~~y~~~~ 739 (1330)
T TIGR02969 666 LVCAVIADSEVQAKQAAKHVKIVY--RDLEPLILTIEEAIQHKSFFEPER---KLEYGNVDEAFKVVDQI-LEGEIHMGG 739 (1330)
T ss_pred eEEEEEECCHHHHHHHhcCCEEEE--ecCCCCcCCHHHHhcCCCEecccc---cccCCchhhhhccCCEE-EEEEEEECC
Confidence 999999999999999999999999 778566799999999887543211 35789999999999996 999999999
Q ss_pred ccCCCcCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCCCccHHHHHHHHHHHh
Q 000981 781 QYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYK 859 (1202)
Q Consensus 781 q~H~~mEp~~avA~~~~-dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~ 859 (1202)
|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++||+|+++++|||||+|.+.....++.||++|++
T Consensus 740 ~~H~~mEp~~~~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aA~aA~~ 819 (1330)
T TIGR02969 740 QEHFYMETQSMLVVPKGEDQEMDVYVSTQFPKYIQDIVAATLKLPVNKVMCHVRRVGGAFGGKVGKTSIMAAITAFAANK 819 (1330)
T ss_pred EeecccCCCEEEEEEeCCCCeEEEEECCcCHHHHHHHHHHHhCCCHHHeEEEeCCcccCcccccccccHHHHHHHHHHHH
Confidence 99999999999999984 57899999999999999999999999999999999999999999997544456889999999
Q ss_pred cCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhccccCCCCccCcEEEEE
Q 000981 860 LCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNMIGALKKYDWGALHFDI 938 (1202)
Q Consensus 860 ~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~~~~~~~Y~ipn~~~~~ 938 (1202)
+||||||+|||+|+|+.+++|||+.++||+|+++||+|++++++++.|+|+|.+.+. ++...+.+..++|+|||+++++
T Consensus 820 ~gRPVk~~~sR~e~~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~~~~v~~~~~~~~~~~Y~ipn~~~~~ 899 (1330)
T TIGR02969 820 HGRAVRCTLERGEDMLITGGRHPYLGKYKAGFMNDGRIVALDVEHYSNGGSSLDESLWVIEMGLLKMDNAYKFPNLRCRG 899 (1330)
T ss_pred hCCCEEEEecHHHHhhhcCCcCceEEEEEEEECCCCCEEEEEEEEEEecccccCcchHHHHHHHHhcCCCccCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999998775 5555666778999999999999
Q ss_pred EEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCccc-cCCHHHHHHHHHH
Q 000981 939 KVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYA-EYTLPLIWDKLAV 1017 (1202)
Q Consensus 939 ~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~ 1017 (1202)
+.|+||+||+|||||||.||++|++|++||++|++|||||+|||++|++++++.. ++ |++. ...+++||+++++
T Consensus 900 ~~v~TN~~~~~a~RG~G~~q~~fa~E~~mD~lA~~lg~DP~e~R~~N~~~~gd~~-p~----~~~~~~~~~~~~l~~~~~ 974 (1330)
T TIGR02969 900 WACRTNLPSNTAFRGFGFPQAGLITEACITEVAAKCGLSPEKVRTINMYKEIDQT-PY----KQEINAKNLFQCWRECMA 974 (1330)
T ss_pred EEEECCCCCCCccCCCchHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCcccC-CC----CcccCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876643 23 3333 2389999999999
Q ss_pred hCCchhHHHHHHHHhhcCCcceeeeEeeeeeeccccc-----ccceEEEEeeCCcEEEEECCcCCCCchhHHHHHHHHHH
Q 000981 1018 SSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFA 1092 (1202)
Q Consensus 1018 ~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~i~~DGsV~V~~g~~e~GQG~~T~~aQIaAe~ 1092 (1202)
.++|++|+++++.||+.++|++||+|++++.|+.++. +..+.|+|++||+|+|.+|++|||||++|+++||||++
T Consensus 975 ~~~~~~r~~~~~~~~~~~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~v~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~ 1054 (1330)
T TIGR02969 975 KSSYSERKVAVEKFNAENYWKKRGLAVIPLKFPVGLGSVAMGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRE 1054 (1330)
T ss_pred hcCHHHHHHHHHHHhccCCCeEEEEEEEEEEeccccccCCCCCccEEEEEcCCceEEEEECCcCcCCChHHHHHHHHHHH
Confidence 9999999888888998889999999999998887543 57899999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 000981 1093 LSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQGQMGNVEWETLIQQVH 1172 (1202)
Q Consensus 1093 Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~a~~~~~~~~~~~~~elv~~a~ 1172 (1202)
||| |+|+|+|..+||+.+|++++|+|||+|+++|.||++||++||+||.+++++. ...+|.+++..++
T Consensus 1055 LGi--------p~e~V~v~~~DT~~~p~~~gt~gSr~t~~~G~Av~~A~~~l~~rl~~~aa~~----~~~~~~~~~~~~~ 1122 (1330)
T TIGR02969 1055 LKM--------PMSNVHLRGTSTETVPNTNASGGSVVADLNGLAVKDACQTLLKRLEPIISKN----PQGTWKDWAQTAF 1122 (1330)
T ss_pred hCC--------CHHHEEEEcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCCHHHHHHhhc
Confidence 999 9999999999999999999999999999999999999999999999998753 2478999998788
Q ss_pred hCCCceEEEEeee
Q 000981 1173 ICSSEALSTEFIL 1185 (1202)
Q Consensus 1173 ~~~v~l~a~~~~~ 1185 (1202)
..+++|++.+||.
T Consensus 1123 ~~~~~l~~~~~~~ 1135 (1330)
T TIGR02969 1123 DQSISLSAVGYFR 1135 (1330)
T ss_pred cCCCceEEEEEec
Confidence 7789999999884
No 4
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=3.2e-221 Score=2141.50 Aligned_cols=1080 Identities=33% Similarity=0.528 Sum_probs=959.9
Q ss_pred CCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEeecCCCCCCCcchHH
Q 000981 31 STTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIH 110 (1202)
Q Consensus 31 ~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEgl~~~~~~~h~iq 110 (1202)
+++|++|||+ +||||||.||++|+||||||+|+++|+.++++.+++|||||+|+++++|++|+|||||++.++.|||||
T Consensus 1 ~~~ll~~LR~-~~l~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~~vq 79 (1319)
T PLN02906 1 HQTLLEYLRD-LGLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLHPVQ 79 (1319)
T ss_pred CCcHHHHHHh-CCCCCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCCHHH
Confidence 4799999998 999999999999999999999999999889999999999999999999999999999996557899999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCChhHHHHHHHhhhccc--
Q 000981 111 QRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVD-- 188 (1202)
Q Consensus 111 ~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~~~-- 188 (1202)
+||+++||+|||||||||||+||+||+++ .+.| |++||+++|+|||||||||+||++|+++++.+.+
T Consensus 80 ~a~~~~~~~QCG~CtpG~vm~~~~ll~~~----~~~~-------~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~~~~~ 148 (1319)
T PLN02906 80 EALASMHGSQCGFCTPGFIMSMYALLRSS----KTPP-------TEEQIEECLAGNLCRCTGYRPILDAFRVFAKTDDAL 148 (1319)
T ss_pred HHHHHcCCCcCCCCchHHHHHHHHHHHhC----CCCC-------CHHHHHHHhcCCcccCCCCHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999542 1344 5999999999999999999999999999987742
Q ss_pred --------ccccccccccccCC-c--c-------------cc----cccCCCCCCCCCCccCCCcccccccCCceeecC-
Q 000981 189 --------IEDLGINSFWAKGE-S--K-------------EV----KISRLPPYKHNGELCRFPLFLKKENSSAMLLDV- 239 (1202)
Q Consensus 189 --------~~~~~~~~c~~~~~-~--~-------------~~----~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~- 239 (1202)
+++++ ++|..++. + . .+ ..+++++|+++|++ +||++|....+..+.+.+
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~~~~~~~~ 226 (1319)
T PLN02906 149 YTGVSSLSLQDGE-PICPSTGKPCSCGSKTTSAAGTCKSDRFQPISYSEIDGSWYTEKEL-IFPPELLLRKLTPLKLLGN 226 (1319)
T ss_pred CCcccchhhhhcc-ccccccCcccccccccccccccccccccccccccccccccCccccc-cCCHHHhhCCCcceeecCC
Confidence 11222 23321110 0 0 00 12467889988876 899998644334556643
Q ss_pred -CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceE-eee-cccCCeeeeCCCcccccceeecCCcEEEcccCcHH
Q 000981 240 -KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTIS 316 (1202)
Q Consensus 240 -~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~ 316 (1202)
+++|++|+||+||+++|+ +++++++|||||||++ ++. ...++.+|||++|+||+.|+.++++|+|||+|||+
T Consensus 227 ~~~~~~~P~tl~ea~~ll~-----~~~~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~ 301 (1319)
T PLN02906 227 GGLTWYRPTSLQHLLELKA-----EYPDAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLS 301 (1319)
T ss_pred CCceEECcCCHHHHHHHHH-----hCCCCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHH
Confidence 799999999999999999 4688999999999988 433 36789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCc-eEE
Q 000981 317 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEK 395 (1202)
Q Consensus 317 ~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g-~R~ 395 (1202)
+|+++|...+++.++...+.+|.|++++++|||+||||+|||||||++++|+ ||++|+|+||||+|+|.+.+| +|+
T Consensus 302 el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~asP~---sD~~p~LlAl~A~v~l~s~~g~~R~ 378 (1319)
T PLN02906 302 ELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTASPI---SDLNPLWMAAGATFVIISCDGDIRS 378 (1319)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCCCc---hhHHHHHHHcCcEEEEEcCCCCeEE
Confidence 9999888776655566667899999999999999999999999999999999 999999999999999999886 899
Q ss_pred Eehhhhhc---CCCCCCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCce
Q 000981 396 LMLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIR 472 (1202)
Q Consensus 396 vpl~dF~~---~~~l~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~ 472 (1202)
||++|||. ++.|+++|||++|+||.+.. ..++.+||+++| +++|||+||+||.++++.++ ++++
T Consensus 379 vpl~dFf~g~~kt~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~l~~~~--~~~~ 445 (1319)
T PLN02906 379 VPASDFFLGYRKVDLKPDEILLSVFLPWTRP----------FEYVKEFKQAHR-RDDDIAIVNAGMRVKLEEKD--GEWI 445 (1319)
T ss_pred EEHHHhcCccccccCCCCceEEEEEccCCCC----------CccEEEEEEcCc-cccchhheeeEEEEEEecCC--CCce
Confidence 99999997 78999999999999997654 467889999999 79999999999999997311 1138
Q ss_pred eeeeEEEEeccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC--CcHHHHhHhHHHHHHHHHHHHhhhc
Q 000981 473 VNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT--SIPAYRSSLAVGFLYEFFGSLTEMK 550 (1202)
Q Consensus 473 i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~--~s~~YR~~la~~L~~k~l~~~~~~~ 550 (1202)
|+++||+||||+++ |+|+.++|++|.||+|+++++++|++.+.+++.|.++. +|++||++|+.+||+|||+++.+++
T Consensus 446 i~~aria~Ggva~~-p~ra~~~E~~L~G~~~~~~~i~~A~~~l~~~~~p~~d~~~~sa~YR~~la~~ll~r~~~~~~~~~ 524 (1319)
T PLN02906 446 VSDASIAYGGVAPL-SVSARKTEEFLIGKPWNKETLQDALKVLQKDILIKEDAPGGMVEFRKSLALSFFFKFFLWVSHQL 524 (1319)
T ss_pred EeEEEEEEeccCCc-eecHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCcCCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999 99999999999999999999999999999999888774 7999999999999999999999876
Q ss_pred cCCCccccCCCCCCCCcccccccccccccccccccccCCccccccccCCCCCCCCCccccccccccCccceeccccCCCC
Q 000981 551 NGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSP 630 (1202)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~ 630 (1202)
....+.+ +..++. ..+ ....+++|+|++.|.|+.++++++|||+++|+|+..||||+++|++|++.+
T Consensus 525 ~~~~~~~----~~~~~~-------~~~--~~~~~~~~~~~~~q~~~~~~~~~~vGk~~~r~d~~~kvtG~a~Y~~Di~~~ 591 (1319)
T PLN02906 525 EADGSTI----ETFPES-------HLS--AAQPFPRPSSVGMQDYETVKQGTAVGQPEVHLSAELQVTGEAEYADDIPMP 591 (1319)
T ss_pred ccccccc----ccCChh-------hcc--ccccccCCCCccceecccccccccCCCCccCcchhhhcceeEEeccCCcCC
Confidence 2110000 011111 111 235778999999999998789999999999999999999999999999855
Q ss_pred CCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCC-CCCcccCCCcccccCCceeecCCeEEEEEeCC
Q 000981 631 INCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN-IGSKTIFGSEPLFADELTRCAGQPVAFVVADS 709 (1202)
Q Consensus 631 ~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n-~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAet 709 (1202)
|||||+++||||++||+|++||+|+|++||||++|+|++|+| +.| .+ ....++|+|++++|+|+|||||+|||+|
T Consensus 592 ~g~L~a~~vrSp~aharI~sID~s~A~~~pGV~~v~t~~Dip--~~~~~g--~~~~~~~~la~~~V~y~GqpVa~VvA~t 667 (1319)
T PLN02906 592 PNTLHAALVLSTKPHARILSIDDSEAKSSPGFAGIFLAKDVP--GDNMIG--PVVHDEELFATDVVTCVGQVIGVVVADT 667 (1319)
T ss_pred CCCEEEEEEecCcCceEEeecchHHHhCCCCeEEEEchhhCC--CCCCCC--CCCCCeeEecCcEEEEcCCeEEEEEECC
Confidence 899999999999999999999999999999999999999998 433 32 2336899999999999999999999999
Q ss_pred HHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCCcccCCccccCCCCCccccccc--CCEeEEEEEEEeCcccCCCcC
Q 000981 710 QKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNE--ADHRILAAEIKLGSQYYFYME 787 (1202)
Q Consensus 710 ~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~~af~~--a~~vvve~~~~~~~q~H~~mE 787 (1202)
+++|++|+++|+|+| |+| |+++|+++|++++++|+... ....+||++++|++ ++++ ||++|++++|+|+|||
T Consensus 668 ~~~A~~Aa~~V~Vey--e~l-p~v~~~~~Al~~~a~~~~~~--~~~~~Gdv~~af~~a~a~~v-ve~~~~~~~~~H~~mE 741 (1319)
T PLN02906 668 QENAKAAARKVKVEY--EEL-PAILSIEEAIEAGSFHPNTE--RRLEKGDVELCFASGQCDRI-IEGEVQMGGQEHFYLE 741 (1319)
T ss_pred HHHHHHHhCCCEEEE--ecC-CccCCHHHHhcCCCcccCCC--ceeecCCHHHHhhccCCceE-EEEEEEECCccccccC
Confidence 999999999999999 888 89999999999988764221 23578999999999 6985 9999999999999999
Q ss_pred CCeEEEEECCC-CcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCCCccHHHHHHHHHHHhcCCCEEE
Q 000981 788 TQTALAVPDED-NCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRI 866 (1202)
Q Consensus 788 p~~avA~~~~d-g~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl 866 (1202)
|++|+|+|++| |+|+||+|||+|+.+|..||++||||++||+|+++++|||||+|.+....++++||++|+++||||||
T Consensus 742 p~~~~A~~~~~~g~l~v~~sTQ~p~~~r~~vA~~Lgip~~kVrV~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl 821 (1319)
T PLN02906 742 PNSSLVWTSDSGNEVHMISSTQAPQKHQKYVAHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAAAVPAYLLNRPVKL 821 (1319)
T ss_pred CCeEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhCCChHHeEEEeCCcccCccccccccchHHHHHHHHHHHhCCCEEE
Confidence 99999999977 68999999999999999999999999999999999999999999986655678899999999999999
Q ss_pred EeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhccccCCCCccCcEEEEEEEeecCC
Q 000981 867 YVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNMIGALKKYDWGALHFDIKVCRTNL 945 (1202)
Q Consensus 867 ~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~ 945 (1202)
+|||+|+|+++++|||+.++||+|+++||+|++++++++.|+|+|.+++. ++...+.++.++|+|||++++++.|+||+
T Consensus 822 ~~sReE~~~~~~~R~~~~~~~k~g~~~dG~I~a~~~~~~~d~Ga~~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~ 901 (1319)
T PLN02906 822 TLDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSGAVLERAMFHSDNVYEIPNVRIVGNVCFTNF 901 (1319)
T ss_pred EecHHHHhhhcCCccceEEEEEEEECCCCCEEEEEEEEEecCcccCCcchHHHHHHHHhcCCCccCcceEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999998875 55566677889999999999999999999
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCcccc-CCHHHHHHHHHHhCCchhH
Q 000981 946 PSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAE-YTLPLIWDKLAVSSSFNQR 1024 (1202)
Q Consensus 946 ~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~r 1024 (1202)
+|+|||||||.||++|++|++||++|++|||||+|||++|++++++.+ +.|+.++ ..+++||+++++.++|++|
T Consensus 902 ~~~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~~Nl~~~g~~~-----~~g~~~~~~~~~~~l~~~~~~~~~~~r 976 (1319)
T PLN02906 902 PSNTAFRGFGGPQGMLITENWIQRIAVELNKSPEEIREMNFQGEGSVT-----HYGQVLQHCTLPQLWDELKVSCDFLKR 976 (1319)
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCCC-----cCCccccCCCHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999999999999876543 3454443 3899999999999999998
Q ss_pred HHHHHHHhhcCCcceeeeEeeeeeeccccc-----ccceEEEEeeCCcEEEEECCcCCCCchhHHHHHHHHHHhcccccC
Q 000981 1025 TEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCG 1099 (1202)
Q Consensus 1025 ~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~i~~DGsV~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~ 1099 (1202)
++++++||+.++|+|||+|+++..|+.++. +..+.|+|++||+|+|.+|++|||||++|+++||||++|||
T Consensus 977 ~~~~~~~~~~~~~~krGiG~a~~~~g~~~~~~~~~~~~a~V~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGi---- 1052 (1319)
T PLN02906 977 REEVDEFNAKNRWKKRGVAMVPTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNI---- 1052 (1319)
T ss_pred HHHHHHHhhcCCCceEEEEEEecccccccccccCCccceEEEEcCCceEEEEECCccCCCChHHHHHHHHHHHHCC----
Confidence 888889999899999999999888887542 57899999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhCCCceE
Q 000981 1100 GTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQGQMGNVEWETLIQQVHICSSEAL 1179 (1202)
Q Consensus 1100 ~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~a~~~~~~~~~~~~~elv~~a~~~~v~l~ 1179 (1202)
|+|+|+|..+||+.+|++++|+|||+|+++|.||++||++||+||+++++++ ..++|.|++..+|..+++|+
T Consensus 1053 ----p~d~V~v~~~DT~~~p~~~gT~aSr~t~~~G~Av~~Aa~~l~~rl~~~a~~~----~~~~~~~l~~~~~~~~~~l~ 1124 (1319)
T PLN02906 1053 ----PLSSVFISETSTDKVPNASPTAASASSDMYGAAVLDACEQIKARMEPVASKL----NFSSFAELVTACYFQRIDLS 1124 (1319)
T ss_pred ----CHHHEEEEccCCCCCCCCCCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHhhccCCCeE
Confidence 9999999999999999999999999999999999999999999999998765 35899999999988888999
Q ss_pred EEEeeec
Q 000981 1180 STEFILF 1186 (1202)
Q Consensus 1180 a~~~~~~ 1186 (1202)
+++||+.
T Consensus 1125 a~~~~~~ 1131 (1319)
T PLN02906 1125 AHGFYIT 1131 (1319)
T ss_pred EEEEecC
Confidence 9999964
No 5
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=6.6e-147 Score=1395.29 Aligned_cols=741 Identities=20% Similarity=0.274 Sum_probs=627.9
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccC-CCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccC
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLG-CGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~g-C~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (1202)
|+|+|+|||++++++ ++|+++|+++||+ +||||+|.| |++|.||||||+| ||++|+||++|+.+++|
T Consensus 1 ~~i~~~vNg~~~~~~-~~~~~~l~~~LR~-~~~~~~k~g~c~~g~CGaCtv~~----------dg~~v~sC~~~~~~~~g 68 (956)
T PRK09800 1 MIIHFTLNGAPQELT-VNPGENVQKLLFN-MGMHSVRNSDDGFGFAGSDAIIF----------NGNIVNASLLIAAQLEK 68 (956)
T ss_pred CeEEEEECCEEEEEe-cCCCCCHHHHHHH-CCCCccccCCCCcccCCCCEEEE----------CCeEEeHHHHHHHHcCC
Confidence 569999999999997 8999999999999 999999998 8999999999999 89999999999999999
Q ss_pred ceEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 000981 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (1202)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRC 170 (1202)
++|+|||||+. ++.|||||+||+++|++|||||||||||++++||+ ++|+|+ ++||+++|+||||||
T Consensus 69 ~~i~Tvegl~~-~~~~~~~q~af~~~~~~QCG~CtpG~~m~~~~ll~-----~~~~p~-------~~~i~~~l~gnlCRC 135 (956)
T PRK09800 69 ADIRTAESLGK-WNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLD-----RIAAPT-------REEIDDALSGLFSRD 135 (956)
T ss_pred CEEEecCCcCC-CCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHh-----cCCCCC-------HHHHHHHHhhchhcc
Confidence 99999999985 56899999999999999999999999999999995 457764 999999999999999
Q ss_pred CCChhHHHHHHHhhhcccccccccccccccCCcccccccCCCCCCCCCCccCCCcccccccCCceeecCCceEEecCCHH
Q 000981 171 TGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQ 250 (1202)
Q Consensus 171 tgy~~i~~a~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~sl~ 250 (1202)
|||++|++|++.++...
T Consensus 136 tgy~~i~~av~~~~~~~--------------------------------------------------------------- 152 (956)
T PRK09800 136 AGWQQYYQVIELAVARK--------------------------------------------------------------- 152 (956)
T ss_pred CCcHHHHHHHHHHHHhh---------------------------------------------------------------
Confidence 99999999998643110
Q ss_pred HHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHHHHHhhhhh
Q 000981 251 ELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFH 330 (1202)
Q Consensus 251 eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~ 330 (1202)
+ .
T Consensus 153 ------~------~------------------------------------------------------------------ 154 (956)
T PRK09800 153 ------N------N------------------------------------------------------------------ 154 (956)
T ss_pred ------c------c------------------------------------------------------------------
Confidence 0 0
Q ss_pred hhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhhhhcCCCCCCC
Q 000981 331 SEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSR 410 (1202)
Q Consensus 331 ~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF~~~~~l~~~ 410 (1202)
+. +
T Consensus 155 ------------------------------------~~---~-------------------------------------- 157 (956)
T PRK09800 155 ------------------------------------PQ---A-------------------------------------- 157 (956)
T ss_pred ------------------------------------cc---c--------------------------------------
Confidence 00 0
Q ss_pred ceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEeccCCccccc
Q 000981 411 SILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIR 490 (1202)
Q Consensus 411 eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~r 490 (1202)
+ . . . .
T Consensus 158 ~-----------~----------~----------~-----------------~--------------------------- 162 (956)
T PRK09800 158 T-----------I----------D----------I-----------------A--------------------------- 162 (956)
T ss_pred c-----------c----------c----------c-----------------c---------------------------
Confidence 0 0 0 0 0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCcHHHHhHhHHHHHHHHHHHHhhhccCCCccccCCCCCCCCcccc
Q 000981 491 ARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDS 570 (1202)
Q Consensus 491 a~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~~s~~YR~~la~~L~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1202)
T Consensus 163 -------------------------------------------------------------------------------- 162 (956)
T PRK09800 163 -------------------------------------------------------------------------------- 162 (956)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccCCccccccccCCCCCCCCCccccccccccCccceeccccCCCCCCceEEEEEecCCCCceecc
Q 000981 571 HVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKG 650 (1202)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~s 650 (1202)
.+.+++++.|||+++|+|++.||||+++|++|+. +|||||++++|||++||+|++
T Consensus 163 ------------------------~~~~~~~~~VGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahArI~s 217 (956)
T PRK09800 163 ------------------------PTFRDDLEVIGKHYPKTDAAKMVQAKPCYVEDRV-TADACVIKMLRSPHAHALITH 217 (956)
T ss_pred ------------------------cccccccccCCCCCCCcChHhhCcccccccccCC-CCCCEEEEEeecCCCcEEEee
Confidence 0001223569999999999999999999999997 789999999999999999999
Q ss_pred CCCcccCCCCCeEEEEEcCCCCCC----CCCCCCcccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEec
Q 000981 651 IEFKSESVPDVVTALLSYKDIPEG----GQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEM 726 (1202)
Q Consensus 651 ID~s~A~~~pGVv~vvt~~Dip~~----g~n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~ 726 (1202)
||+|+|++||||++|+|++|+|.. +.+. ......++++|++++|||+|||||+|||+|+++|++|+++|+|+|
T Consensus 218 ID~s~A~a~pGV~~Vvt~~Dvp~~~~~~~~~~-~~~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~V~Vey-- 294 (956)
T PRK09800 218 LDVSKAEALPGVVHVITHLNCPDIYYTPGGQS-APEPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEY-- 294 (956)
T ss_pred eEHHHHHhCCCeEEEEcHHHCCcccccccCcC-CCCCCCCCccccCCeEEEcCCeEEEEEECCHHHHHHHhcCCceEE--
Confidence 999999999999999999999831 1111 111112234456999999999999999999999999999999999
Q ss_pred CCCCCcccCHHHHhhcCCC--ccc------------------------------------CCcc---ccCCCCCcccccc
Q 000981 727 GNLEPPILSVEEAVDRSSL--FEV------------------------------------PSFL---YPKPVGDISKGMN 765 (1202)
Q Consensus 727 e~l~p~v~~~e~Al~~~~~--~~~------------------------------------~~~~---~~~~~Gdv~~af~ 765 (1202)
|+| |+++|+++|++++++ |+. +.|+ .....||++++|+
T Consensus 295 e~L-p~v~d~~~Al~~~a~~vh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af~ 373 (956)
T PRK09800 295 EVL-KPVMSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGFA 373 (956)
T ss_pred EeC-CccCCHHHHhcCCCceecccccccccccccccccccccccccccccccccccccCCCCceeeeccccCCCHHHHHh
Confidence 889 999999999998874 321 1122 1246799999999
Q ss_pred cCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCCC
Q 000981 766 EADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIK 845 (1202)
Q Consensus 766 ~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~ 845 (1202)
+|+++ ||++|++++|+|+||||++|+|+|++ ++|+||+|||+|+.+|..||++||||++||||+.+++|||||+|...
T Consensus 374 ~a~~v-ve~~y~~~~~~H~~mEp~~aiA~~d~-~~l~v~~stQ~p~~~r~~vA~~LGlp~~kVrV~~~~vGGgFG~K~~~ 451 (956)
T PRK09800 374 DADVI-IERTYNSTQAQQCPTETHICFTRMDG-DRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQDI 451 (956)
T ss_pred hCCEE-EEEEEEeCCcccccCCCceEEEEEeC-CeeEEEECCCcHHHHHHHHHHHHCCCHHHeEEEcCCCCccCcCcccc
Confidence 99996 99999999999999999999999985 47999999999999999999999999999999999999999999853
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhccc
Q 000981 846 AMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNMIG 924 (1202)
Q Consensus 846 ~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~~~ 924 (1202)
.....||++|+++||||||+|||+|+|.++++|||+.+++|+|+|+||+|+|++++++.|+|+|.+++. +......+
T Consensus 452 --~~e~~aA~aA~~~grPVkl~~tReE~~~~~~~R~~~~~~~k~g~d~dG~I~a~~~~~~~d~Gay~~~~~~v~~~~~~~ 529 (956)
T PRK09800 452 --LLEEVCAWATCVTGRPVLFRYTREEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPAL 529 (956)
T ss_pred --cHHHHHHHHHHHhCCCEEEEeeHHHHhhCcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcCCCcchHHHHHHHhh
Confidence 244568999999999999999999999999999999999999999999999999999999999988765 33334445
Q ss_pred cCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccc------cc
Q 000981 925 ALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFY------ES 998 (1202)
Q Consensus 925 ~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~------~~ 998 (1202)
..++|+|||++++++.|+||++|+|+|||||.||+.|++|++||++|++|||||+|||+||++++|+....+ ..
T Consensus 530 ~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~Es~mDelA~~lg~DPve~R~rN~~~~gd~~~~~~~~~~g~~ 609 (956)
T PRK09800 530 SLPLYPCDNVDFQVTTYYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKILGAIGEGKA 609 (956)
T ss_pred cCcCcccceEEEEEEEEECCCCCCCCcCCCCcchHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCcccccccccccccc
Confidence 568999999999999999999999999999999999999999999999999999999999999877542110 00
Q ss_pred CCCcc-c-cCCHHHHHHHHHHhCCchhHHHHHHHHhhcCCcc-eeeeEeeeeeeccc-ccccceEEEEeeCCcEEEEECC
Q 000981 999 SAGEY-A-EYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWR-KKGVCRLPIVHEVT-LRSTPGKVSILSDGSVVVEVGG 1074 (1202)
Q Consensus 999 ~~g~~-~-~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~-~rGia~~~~~~~~~-~~~~~a~V~i~~DGsV~V~~g~ 1074 (1202)
+.+.+ . ...+.+||+++++.++|+++++ ..++|+ |+|+++....++.. .....+.|+|++||+|+|.+|+
T Consensus 610 ~~~~~~~~s~~~~~~L~~~~e~~~w~~~~~------~~g~~~~G~Gia~~~~~~g~~~~~~~~a~v~l~~dGsv~v~~g~ 683 (956)
T PRK09800 610 PTSVPSAASCALEEILRQGREMIQWSSPKP------QNGDWHIGRGVAIIMQKSGIPDIDQANCMIKLESDGTFIVHSGG 683 (956)
T ss_pred cccCccccCCCHHHHHHHHHHhcCcchhhh------hcCCCeeEEEEEEEEEcccCCCCCCceEEEEECCCceEEEEECC
Confidence 11222 1 3378999999999999987532 235554 55555543323322 1257789999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000981 1075 IEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRER 1154 (1202)
Q Consensus 1075 ~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~a~~ 1154 (1202)
+|||||++|+++||+|++||+ |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+.++++
T Consensus 684 ~e~GqG~~T~~~QiaAe~LGi--------p~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~Aa~~l~~kl~~~aa~ 755 (956)
T PRK09800 684 ADIGTGLDTVVTKLAAEVLHC--------PPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARLAAENLREKILFHGAQ 755 (956)
T ss_pred CCCCccHHHHHHHHHHHHHCC--------CceeEEEEeCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999888
Q ss_pred HhCC----------------CCCCCHHHHHHHHHhC--CCceEEEEeeec-----Ccccccceeee
Q 000981 1155 LQGQ----------------MGNVEWETLIQQVHIC--SSEALSTEFILF-----NFVCQRTCTDY 1197 (1202)
Q Consensus 1155 ~~~~----------------~~~~~~~elv~~a~~~--~v~l~a~~~~~~-----~~~~~~~~~~~ 1197 (1202)
+|+. .+.++|.+++..++.. ...|.++++|.. .|.++..++++
T Consensus 756 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~aeVeV 821 (956)
T PRK09800 756 MLGEPVADVQLATPGVVRGKKGEVSFGDIAHKGETGTGFGSLVGTGSYITPDFAFPYGANFAEVAV 821 (956)
T ss_pred HhCCCHHHEEEecCCEEeCCCCcccHHHHHHHHhcCCCCCCeEEEEEecCCCCCcceEEEEEEEEE
Confidence 7642 1347899999887653 346999998853 34444444443
No 6
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=1.1e-143 Score=1367.58 Aligned_cols=736 Identities=21% Similarity=0.307 Sum_probs=621.9
Q ss_pred EEECCEEEEEccCCCCCcHHHHHhhccCCccccc-CCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEE
Q 000981 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL-GCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLIT 94 (1202)
Q Consensus 16 ~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~-gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~ 94 (1202)
|+|||++++++ ++|+++|+++||+. ||||+|. ||++|.||||||+| ||++|+|||+|+.+++|++|+
T Consensus 1 ~~~Ng~~~~~~-~~~~~~l~~~LR~~-~l~~~k~~~c~~g~CGaCtv~~----------dg~~v~sC~~~~~~~~g~~i~ 68 (951)
T TIGR03313 1 FTLNGAPQTLE-CKLGENVQTLLFNM-GMHSVRNSDDGFGFAGSDAILF----------NGVLKNASLLIAAQLEGAEVR 68 (951)
T ss_pred CEECCEEEEEe-cCCCCCHHHHHHHC-CCCCCcCCCCCcccCCCCEEEE----------CCeEeeHHHHHHHHcCCCEEE
Confidence 78999999997 89999999999996 9999999 79999999999999 899999999999999999999
Q ss_pred EeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCCh
Q 000981 95 TSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 174 (1202)
Q Consensus 95 TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRCtgy~ 174 (1202)
|||||+. ++.+||+|+||++++++|||||||||||++++||+ ++|+|+ ++||+++|+|||||||||+
T Consensus 69 Tiegl~~-~~~~~~~q~af~~~~a~QCG~CtpG~~~~~~~ll~-----~~~~p~-------~~~i~~~l~gnlcrctgy~ 135 (951)
T TIGR03313 69 TAESLGQ-WNQLSLVQQAMVDVGVVQSGYNDPAAALILTDLLD-----RNTQPN-------RAEIDDALSGLFSRDAGYQ 135 (951)
T ss_pred ecCcCCC-CCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHh-----cCCCCC-------HHHHHHHHhcceeccCCcH
Confidence 9999985 56899999999999999999999999999999994 356664 9999999999999999999
Q ss_pred hHHHHHHHhhhcccccccccccccccCCcccccccCCCCCCCCCCccCCCcccccccCCceeecCCceEEecCCHHHHHH
Q 000981 175 PIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQELRN 254 (1202)
Q Consensus 175 ~i~~a~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~sl~eal~ 254 (1202)
+|++|++.++...
T Consensus 136 ~i~~av~~~~~~~------------------------------------------------------------------- 148 (951)
T TIGR03313 136 QFYQVIELAVKRL------------------------------------------------------------------- 148 (951)
T ss_pred HHHHHHHHHHHhc-------------------------------------------------------------------
Confidence 9999998643110
Q ss_pred HHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHHHHHhhhhhhhhh
Q 000981 255 VLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEAL 334 (1202)
Q Consensus 255 ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~~~~~ 334 (1202)
. . +
T Consensus 149 --~------~------------------------------~--------------------------------------- 151 (951)
T TIGR03313 149 --K------D------------------------------P--------------------------------------- 151 (951)
T ss_pred --c------c------------------------------c---------------------------------------
Confidence 0 0 0
Q ss_pred hhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhhhhcCCCCCCCceEE
Q 000981 335 MVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSILL 414 (1202)
Q Consensus 335 ~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF~~~~~l~~~eii~ 414 (1202)
. +
T Consensus 152 ---------------------------------~---~------------------------------------------ 153 (951)
T TIGR03313 152 ---------------------------------E---H------------------------------------------ 153 (951)
T ss_pred ---------------------------------c---c------------------------------------------
Confidence 0 0
Q ss_pred EEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEeccCCcccccHHHH
Q 000981 415 SVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRV 494 (1202)
Q Consensus 415 ~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~ 494 (1202)
+ - . . + .
T Consensus 154 --------------------------~---~-~---~-----------~----------------------~-------- 159 (951)
T TIGR03313 154 --------------------------K---Q-S---I-----------A----------------------P-------- 159 (951)
T ss_pred --------------------------c---c-c---c-----------c----------------------C--------
Confidence 0 0 0 0 0 0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCcHHHHhHhHHHHHHHHHHHHhhhccCCCccccCCCCCCCCcccccccc
Q 000981 495 EEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQ 574 (1202)
Q Consensus 495 E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~~s~~YR~~la~~L~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1202)
T Consensus 160 -------------------------------------------------------------------------------- 159 (951)
T TIGR03313 160 -------------------------------------------------------------------------------- 159 (951)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCccccccccCCCCCCCCCccccccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCc
Q 000981 575 NHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFK 654 (1202)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s 654 (1202)
..+++++.|||+++|+|++.||||+++|++|+. +|||||++++|||++||+|+|||+|
T Consensus 160 ---------------------~~~~~~~~iGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~v~rSP~ahArI~sID~s 217 (951)
T TIGR03313 160 ---------------------EFRDDLTIIGKNCPKIDAAKMVQAKPCYVEDRV-PADACVIKMLRSPHPHAWITHLDVS 217 (951)
T ss_pred ---------------------ccccccccCCCCCcCcChHhhCccCccccccCC-CCCCEEEEEEecCCCcEEEEeeEHH
Confidence 001223469999999999999999999999997 7899999999999999999999999
Q ss_pred ccCCCCCeEEEEEcCCCCCC-----CCCCCCcccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCC
Q 000981 655 SESVPDVVTALLSYKDIPEG-----GQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNL 729 (1202)
Q Consensus 655 ~A~~~pGVv~vvt~~Dip~~-----g~n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l 729 (1202)
+|++||||++|+|.+|+|.. +...+ ....+++.|++++|||+|||||+|||+|+|+|++|+++|+||| |+|
T Consensus 218 ~A~a~pGV~~Vvt~~D~p~~~~~~~~~~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~I~Vey--e~L 293 (951)
T TIGR03313 218 KAEALPGVVHVITHLNCPDIYYTPGGQSAP--EPSPLDRRMFGQKMRHVGDRVAAVVAESEEIALHALKLIEVEY--DVL 293 (951)
T ss_pred HHHhCCCeEEEEeHHHCCccccCCCCccCC--CCCCCcccccCCeEEEcCCEEEEEEECCHHHHHHHhcCCeeEE--EeC
Confidence 99999999999999999831 11111 1112344568999999999999999999999999999999999 888
Q ss_pred CCcccCHHHHhhcCCC--cccC------------------------------------Ccc---ccCCCCCcccccccCC
Q 000981 730 EPPILSVEEAVDRSSL--FEVP------------------------------------SFL---YPKPVGDISKGMNEAD 768 (1202)
Q Consensus 730 ~p~v~~~e~Al~~~~~--~~~~------------------------------------~~~---~~~~~Gdv~~af~~a~ 768 (1202)
|+++|+++|++++++ |+.. .|+ .....||++++|++|+
T Consensus 294 -p~v~d~~~Al~~~ap~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af~~A~ 372 (951)
T TIGR03313 294 -TPVMSIDEAMAAEAPIVHDEPIVYGAGAPDDLEEQNANADPRGEHMIINFPIGSRPRKNIAASVHGHIGDLNKGFAEAD 372 (951)
T ss_pred -CccCCHHHHhcCCCCeeccccccccccccccccccccccccccccccccccccccCCCceeeeccccCCCHHHHHhcCC
Confidence 999999999998874 3210 111 1246799999999999
Q ss_pred EeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCCCccH
Q 000981 769 HRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMP 848 (1202)
Q Consensus 769 ~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~ 848 (1202)
++ ||++|++++|+|+||||++|+|+|++ ++|+||+|||+|+.+|..||++||||++||||+.+++|||||+|....
T Consensus 373 ~v-ve~~y~~~~~~H~~mEp~~aiA~~d~-~~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~-- 448 (951)
T TIGR03313 373 VI-IERTYESTQAQQCPTETHICFTYMDG-ERLVIHASTQVPWHVRRQVARIVGMKQHKVHVIKERVGGGFGSKQDIL-- 448 (951)
T ss_pred EE-EEEEEEECCEeeecCCCceEEEEEcC-CeEEEEECCcCHHHHHHHHHHHHCCCHHHeEEEcCCCCcCcCCccccc--
Confidence 96 99999999999999999999999985 479999999999999999999999999999999999999999998532
Q ss_pred HHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCcchh-hhccccCC
Q 000981 849 VATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSPIMP-SNMIGALK 927 (1202)
Q Consensus 849 ~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~~~~-~~~~~~~~ 927 (1202)
....||++|+++||||||+|||+|+|+++++||++.+++|+|+++||+|+|++++++.|+|+|.+++..+. .......+
T Consensus 449 ~e~~aA~aA~~~GrPVkl~~tReE~~~~~~~R~~~~~~~k~g~d~dG~I~A~~~~~~~d~Gay~~~~~~v~~~~~~~~~~ 528 (951)
T TIGR03313 449 LEEVCAWATWVTGRPVYFRYTREEEFICNTSRHVAKVTVKLGAKKDGKLTAIDMDFRANTGPYGNHSLTVPSNGPALSLP 528 (951)
T ss_pred HHHHHHHHHHHhCCCEEEEeeHHHHhhccCCCCCeEEEEEEEECCCCcEEEEEEEEEEcCccCcccchHHhhhhhhhcCc
Confidence 34568999999999999999999999999999999999999999999999999999999999987655322 22334458
Q ss_pred CCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccc------ccCCC
Q 000981 928 KYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFY------ESSAG 1001 (1202)
Q Consensus 928 ~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~------~~~~g 1001 (1202)
+|+|||++++.+.|+||++|.|||||||.+|+.|++|++||++|++|||||+|||+||++++++..... ..+.+
T Consensus 529 ~Y~ipn~~~~~~~v~TN~~p~ga~Rg~G~~q~~fa~Es~mDelA~~lG~DP~e~R~rN~~~~gd~~~~~~~~~~g~~~~~ 608 (951)
T TIGR03313 529 LYPCDNVDFRVTTYYSNICPTGAYQGYGAPKGNFALTMAMAELAEELGIDQLEMIETNRVHEGQELKILGAIGEGKMPTS 608 (951)
T ss_pred CccCCeEEEEEEEEECCCCCCCCcCCCCcccHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999887543110 00111
Q ss_pred cc-c-cCCHHHHHHHHHHhCCchhHHHHHHHHhhcCCcc-eeeeEeeeeeecccc-cccceEEEEeeCCcEEEEECCcCC
Q 000981 1002 EY-A-EYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWR-KKGVCRLPIVHEVTL-RSTPGKVSILSDGSVVVEVGGIEM 1077 (1202)
Q Consensus 1002 ~~-~-~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~-~rGia~~~~~~~~~~-~~~~a~V~i~~DGsV~V~~g~~e~ 1077 (1202)
.+ . ..++.+||++++++++|+++.+ +.++|+ |+|+++.....+.+. ....+.|+|++||+|+|.+|++||
T Consensus 609 ~~~~~s~~~~~~l~~~~~~~~w~~~~~------~~g~~~~G~Gia~~~~~~g~~~~~~~~a~v~l~~dG~v~v~~g~~e~ 682 (951)
T TIGR03313 609 VPKAASCALEEILRQGRELIEWDSPKQ------AKGDWKIGRGVAIIMQKSGIPDIDQANCMIKLESDGTFIVHSGGADI 682 (951)
T ss_pred ccccCCCcHHHHHHHHHHhcCccchhh------hccCceeeeEEEEEEecccCCCCCCccEEEEEcCCceEEEEECCCCC
Confidence 11 1 2378999999999999987542 235564 555554332223221 257889999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000981 1078 GQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQG 1157 (1202)
Q Consensus 1078 GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~a~~~~~ 1157 (1202)
|||++|+++||+|++||+ |+|+|+|..+||+.+|++++|+|||+|+++|.||++||++||+||+.+++++++
T Consensus 683 GqG~~T~~~QiaAe~LGv--------p~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~ 754 (951)
T TIGR03313 683 GTGLDTVVSKLTAEVLHC--------PMDDVHVISGDTDHALFDKGAYASSGTCFSGNAAKRAAENLREKILFHGAEMLG 754 (951)
T ss_pred CccHHHHHHHHHHHHHCC--------CHHhEEEEeCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999 999999999999999999999999999999999999999999999999888765
Q ss_pred C----------------CCCCCHHHHHHHHHhC--CCceEEEEeee-----cCcccccceeee
Q 000981 1158 Q----------------MGNVEWETLIQQVHIC--SSEALSTEFIL-----FNFVCQRTCTDY 1197 (1202)
Q Consensus 1158 ~----------------~~~~~~~elv~~a~~~--~v~l~a~~~~~-----~~~~~~~~~~~~ 1197 (1202)
. .+.++|.+++..++.. ...+.++++|. +.|.++..++++
T Consensus 755 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aeVeV 817 (951)
T TIGR03313 755 EPVADVDLAAPGLVRGKTGEVSYFDIAHKAETGTGFGQLVGTGSYITSEFAFPYGANFAEVAV 817 (951)
T ss_pred CCHHHEEEecCCEEeCCCCcccHHHHHHHHhccCCCCCeEEEEEecCCCCCccceeEEEEEEE
Confidence 2 1236899998777532 34688998874 245555555443
No 7
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=7.9e-141 Score=1335.06 Aligned_cols=666 Identities=30% Similarity=0.438 Sum_probs=582.3
Q ss_pred EEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEE
Q 000981 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLIT 94 (1202)
Q Consensus 15 ~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~ 94 (1202)
+|+|||+. ++ ++|+++|+++||+++||||||.||++|+||||||+| |++++||||+|+.+++|++|+
T Consensus 2 ~~~~ng~~--~~-~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~----------dg~~~~sc~~~~~~~~g~~i~ 68 (848)
T TIGR03311 2 EFIVNGRE--VD-VNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV----------NGKAVRACRFTTAKLAGKEIT 68 (848)
T ss_pred EEEECCEE--ee-CCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE----------CCeEEehhhhhHHhcCCCEEE
Confidence 69999984 44 579999999999999999999999999999999999 799999999999999999999
Q ss_pred EeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCCh
Q 000981 95 TSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 174 (1202)
Q Consensus 95 TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRCtgy~ 174 (1202)
|||||++ .++||||+||+++|++|||||||||||++++||++ +|+|+ ++||+++|+|||||||||+
T Consensus 69 T~egl~~--~~~~~~q~a~~~~~~~qcG~ctpg~~~~~~~ll~~-----~~~p~-------~~~i~~~l~gnlcrctgy~ 134 (848)
T TIGR03311 69 TVEGLTE--REKDVYAWAFAKAGAVQCGFCIPGMVISAKALLDK-----NPNPT-------EAEIKKALKGNICRCTGYV 134 (848)
T ss_pred ecCCCCC--CCCCHHHHHHHHcCCCcCCCCchhHHHHHHHHHhc-----CCCCC-------HHHHHHHHhcCccccCChH
Confidence 9999985 34799999999999999999999999999999943 57764 9999999999999999999
Q ss_pred hHHHHHHHhhhcccccccccccccccCCcccccccCCCCCCCCCCccCCCcccccccCCceeecCCceEEecCCHHHHHH
Q 000981 175 PIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDVKGSWHSPISVQELRN 254 (1202)
Q Consensus 175 ~i~~a~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~P~sl~eal~ 254 (1202)
+|++|++.++...
T Consensus 135 ~i~~a~~~~~~~~------------------------------------------------------------------- 147 (848)
T TIGR03311 135 KIIKAVRLAAKAF------------------------------------------------------------------- 147 (848)
T ss_pred HHHHHHHHHHHhh-------------------------------------------------------------------
Confidence 9999998542100
Q ss_pred HHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHHHHHhhhhhhhhh
Q 000981 255 VLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEAL 334 (1202)
Q Consensus 255 ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~~~~~ 334 (1202)
+
T Consensus 148 --~----------------------------------------------------------------------------- 148 (848)
T TIGR03311 148 --R----------------------------------------------------------------------------- 148 (848)
T ss_pred --c-----------------------------------------------------------------------------
Confidence 0
Q ss_pred hhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhhhhcCCCCCCCceEE
Q 000981 335 MVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSILL 414 (1202)
Q Consensus 335 ~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF~~~~~l~~~eii~ 414 (1202)
.
T Consensus 149 -------------------------------------~------------------------------------------ 149 (848)
T TIGR03311 149 -------------------------------------E------------------------------------------ 149 (848)
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred EEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEeccCCcccccHHHH
Q 000981 415 SVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRV 494 (1202)
Q Consensus 415 ~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~ 494 (1202)
. . .+ +.
T Consensus 150 ------------------------------~-~---------------~~--------------------~~-------- 155 (848)
T TIGR03311 150 ------------------------------E-I---------------EP--------------------PR-------- 155 (848)
T ss_pred ------------------------------c-c---------------cc--------------------cc--------
Confidence 0 0 00 00
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCCCCCCCCcHHHHhHhHHHHHHHHHHHHhhhccCCCccccCCCCCCCCcccccccc
Q 000981 495 EEFLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQ 574 (1202)
Q Consensus 495 E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~~s~~YR~~la~~L~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1202)
T Consensus 156 -------------------------------------------------------------------------------- 155 (848)
T TIGR03311 156 -------------------------------------------------------------------------------- 155 (848)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCccccccccCCCCCCCCCccccccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCc
Q 000981 575 NHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFK 654 (1202)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s 654 (1202)
. + . ...||++++|+|+++||||+++|++|+. +|||||++++|||++||+|++||+|
T Consensus 156 --------~------------~--~-~~~iG~~~~R~d~~~kvtG~~~Y~~Di~-~pgmL~a~~vrSp~ahA~I~~ID~s 211 (848)
T TIGR03311 156 --------G------------E--P-KGKLGENFPRVDAVPKVLGEGVYVDDMQ-IEGMLYGSALRSKYPRALVKSIDIT 211 (848)
T ss_pred --------c------------c--c-cCCCCCccCCcChhhhCcccccccccCC-CCCCEEEEEEeCCCCCEEEEeeEHH
Confidence 0 0 0 0137999999999999999999999998 6899999999999999999999999
Q ss_pred ccCCCCCeEEEEEcCCCCCCCCC-CCCcccCCCcc-ccc-CCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCC
Q 000981 655 SESVPDVVTALLSYKDIPEGGQN-IGSKTIFGSEP-LFA-DELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEP 731 (1202)
Q Consensus 655 ~A~~~pGVv~vvt~~Dip~~g~n-~~~~~~~~~~~-~~a-~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p 731 (1202)
+|++||||++|+|++|+| +.+ .+ ....++| +|+ +++|||+|||||+|||+|+++|++|+++|+|+| ++| |
T Consensus 212 ~A~a~PGV~aVvt~~Dip--~~~~~g--~~~~~~~~~~a~~~~Vry~Ge~VA~VvA~t~~~A~~A~~~V~Vey--e~l-p 284 (848)
T TIGR03311 212 VALKHPGVVAVLTAKDIP--GNRKIG--HIFKDWPALIAVGEITRYVGDAVALVAAKSKEALREALNLIKVDY--EEL-P 284 (848)
T ss_pred HHHhCCCcEEEEeHHHCC--CccCCC--CCCCCccccccCCCEEEEcCCeEEEEEECCHHHHHHHhCCCcEEE--ecC-C
Confidence 999999999999999998 322 22 1223444 343 589999999999999999999999999999999 888 9
Q ss_pred cccCHHHHhhcCCC--cccCCcc---ccCCCCCcccccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeC
Q 000981 732 PILSVEEAVDRSSL--FEVPSFL---YPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSS 806 (1202)
Q Consensus 732 ~v~~~e~Al~~~~~--~~~~~~~---~~~~~Gdv~~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~s 806 (1202)
+++|+++|+++++. |+ +.|+ ....+||++++|++|+++ ||++|++++|+|+||||++|+|+|++ |+|+||+|
T Consensus 285 ~v~d~~~A~~~~a~~i~~-~~Nv~~~~~~~~Gdv~~af~~A~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~-~~l~v~~s 361 (848)
T TIGR03311 285 PLTSPEEALAEGAPAIHP-KGNILSEEHVVRGDAEEALENSAYV-VTNHYSTPFTEHAFLEPESALAVPEG-DGVIIYTS 361 (848)
T ss_pred CcCCHHHHhcCCCCeECC-CCCCcceeeecCCCHHHHhhcCCeE-EEEEEEECCEeeeecCCceEEEEEeC-CeEEEEEC
Confidence 99999999998873 43 2333 235789999999999996 99999999999999999999999985 46999999
Q ss_pred CCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEE
Q 000981 807 IQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKIT 886 (1202)
Q Consensus 807 TQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~ 886 (1202)
||+|+.+|..+|++||||++||+|+++++|||||+|.... .+..||++|+++||||||+|||+|+|+.+++||++.++
T Consensus 362 tQ~p~~~r~~vA~~Lglp~~~VrV~~~~vGGgFG~K~~~~--~~~~aA~~A~~~gRPVkl~~sR~E~~~~~~~R~~~~~~ 439 (848)
T TIGR03311 362 TQGVYDEQRELASLLGLPKEKIRVINKFVGGGFGGKEDMS--VQHHAALLAWATKRPVKVTLTRKESILVHPKRHAMEMT 439 (848)
T ss_pred CcCHHHHHHHHHHHhCCChHHEEEEeCCCCCcCCcccccc--HHHHHHHHHHHhCCCEEEEechHHhhhccCCCCceEEE
Confidence 9999999999999999999999999999999999998743 45678999999999999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHH
Q 000981 887 YSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEA 965 (1202)
Q Consensus 887 ~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~ 965 (1202)
+|+|+++||+|++++++++.|+|+|.+++. ++.....++.++|+|||++++++.|+||++|.++|||||.||++|++|+
T Consensus 440 ~k~g~d~dG~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~ 519 (848)
T TIGR03311 440 FTTGCDEAGNLTAMKADIIADTGAYASLGGPVLQRACTHAAGPYKYPNVDIRGTAVYTNNPPAGAFRGFGVTQSNFAMEC 519 (848)
T ss_pred EEEEECCCCcEEEEEEEEEEccccCCCccHHHHHHHHHhcCCCccCceEEEEEEEEECCCCCCCCccCCChhHHHHHHHH
Confidence 999999999999999999999999998765 4445556778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCcccc-C-CHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeeeE
Q 000981 966 VIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAE-Y-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVC 1043 (1202)
Q Consensus 966 ~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~-~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia 1043 (1202)
+||++|++|||||+|||+||++++++.+ ++|+.++ . .+++||+++++. |++ ++++|++
T Consensus 520 ~mD~lA~~lg~DP~E~R~rN~~~~gd~~-----~~g~~~~~~~~~~~~l~~~~~~--~~~-------------~~~~G~~ 579 (848)
T TIGR03311 520 NLNLLAEKVGLSPWEIRFKNAVEPGDTL-----PNGQVVSEGTAIKETLLAVKEV--YEK-------------SPCAGIA 579 (848)
T ss_pred HHHHHHHHhCcCHHHHHHHhCCCCCCcC-----CCCceeCCCchHHHHHHHHHHH--hhh-------------ccCCeEE
Confidence 9999999999999999999999887643 3465544 2 589999998874 431 1346776
Q ss_pred eeeeeeccccc---ccceEEEEeeCCcEEEEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccC
Q 000981 1044 RLPIVHEVTLR---STPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQ 1120 (1202)
Q Consensus 1044 ~~~~~~~~~~~---~~~a~V~i~~DGsV~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~ 1120 (1202)
+.....|.+.. ...+.+.++ ||+|+|.+|++|||||++|+++||+|++||| |+|+|+|..+||+.+|+
T Consensus 580 ~~~~~~g~~~~~~~~~~~~~~~~-DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~ 650 (848)
T TIGR03311 580 CAFKNSGVGVGIPDTGRCNLAVE-DGKVHIRTSAACIGQGLGTVLTQIVCETTGL--------PPEVIVCELPDTALTPD 650 (848)
T ss_pred EEEEEeccccCCCCcceEEEEEc-CCEEEEEECCCCcCcCHHHHHHHHHHHHHCC--------CHHHEEEEcCCCCCCCC
Confidence 65433343321 345677776 9999999999999999999999999999999 99999999999999999
Q ss_pred CccCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000981 1121 GGFTAGSTTSEASCQVVRDCCNILVERLTLL 1151 (1202)
Q Consensus 1121 ~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~ 1151 (1202)
+++|+|||+|.++|.||++||++||+||+..
T Consensus 651 ~~gt~aSR~t~~~G~Av~~Aa~~l~~~l~~~ 681 (848)
T TIGR03311 651 SGTTTASRQSLFTGEATRRAAAKLKEALRGR 681 (848)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999754
No 8
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.7e-116 Score=977.90 Aligned_cols=565 Identities=32% Similarity=0.481 Sum_probs=531.6
Q ss_pred CCCCCCCccccccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCCCC
Q 000981 600 EYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIG 679 (1202)
Q Consensus 600 ~~~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~~ 679 (1202)
-...+|.+.++-++..+|+|+|.|+|||+.++|.||+++-.|+++||+|+++|++++++.|||+.|+|++|+| |.|-.
T Consensus 15 ~~~~v~~~~~HeSAhkHV~GtA~YiDD~pepag~LH~~~gls~~aHAri~~mDl~~v~a~PGVv~vlta~DvP--GenDi 92 (781)
T COG4631 15 IRGGVGTSLRHESAHKHVTGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLSAVRAAPGVVDVLTAADVP--GENDI 92 (781)
T ss_pred cCCcccccccccchhhcccceeEEecCCCCcccchhhhccccccchheeeecchHHhhcCCCeEEEEEecCCC--CCCCC
Confidence 3357999999999999999999999999999999999999999999999999999999999999999999999 87742
Q ss_pred CcccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCCcccCCccccCCCCC
Q 000981 680 SKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGD 759 (1202)
Q Consensus 680 ~~~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gd 759 (1202)
.+...|+|+|+++||.|+||||.+|+|+|+++|++|+.+.+||| |+| |+++|+.+|++.+.+...+ ...++||
T Consensus 93 -sp~~hddpl~a~gkVef~GQ~vfaV~A~s~e~ARraA~~a~ieY--e~l-p~~~di~~a~a~~~~v~~p---~~l~rGD 165 (781)
T COG4631 93 -SPVKHDDPLLADGKVEFHGQPVFAVIAESREAARRAARLAKIEY--EDL-PPVTDIDEAIAAGRLVTPP---LTLKRGD 165 (781)
T ss_pred -CcccCCCccccCceEEEccceEEEEeehhHHHHHHHHHhhhccc--ccC-CccCCHHHHhhcccccCCc---hhhcccc
Confidence 23367999999999999999999999999999999999999999 999 9999999999988654322 2578999
Q ss_pred cccccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCC
Q 000981 760 ISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAF 839 (1202)
Q Consensus 760 v~~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgF 839 (1202)
.+.+|+.|.+. ++|+++++.|+|||||.|.++|.|+||+.++||+|||.|..+|..+|++||+|.|.|.|.+.|+||||
T Consensus 166 ~~a~~~~Ap~r-~~G~~~iGGQehFYLEgqia~a~p~Ed~~v~v~~STQhPtE~Q~~vahvLGvpsn~VtV~~rRMGGGF 244 (781)
T COG4631 166 AAAALAAAPHR-LQGEMRIGGQEHFYLEGQIALAVPGEDGDVTVWSSTQHPTEVQHLVAHVLGVPSNAVTVEVRRMGGGF 244 (781)
T ss_pred hhhhhhhCchh-heeeEEEcCeeeEEEeeeeeEeccCCCCCEEEEecCCCcHHHHHHHHHHhCCCcceEEEEEEeecCCc
Confidence 99999999996 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-ch
Q 000981 840 GGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IM 918 (1202)
Q Consensus 840 GgK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~ 918 (1202)
|||++.....++.||++|+|++||||+..+|+|||.++||||++...|++|||+||+|++++..+..++|++.++|. ++
T Consensus 245 GGKEtQ~~~fAa~aA~aA~k~~r~vk~RpdRdeDm~~TGKRHdF~v~y~vGfDdeGri~~v~~~~aarcGfS~DLSgpV~ 324 (781)
T COG4631 245 GGKETQANQFAALAALAAKKTGRPVKIRPDRDEDMTATGKRHDFHVDYEVGFDDEGRILGVDATLAARCGFSADLSGPVT 324 (781)
T ss_pred CcccccchHHHHHHHHHHHHhCCceeecCCcchhhhhccCcCceEEEeeeccCCCCcEEEeeeehhhccCcccccCccch
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred hhhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccc
Q 000981 919 PSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYES 998 (1202)
Q Consensus 919 ~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~ 998 (1202)
+++++|+++.|.+|++++.++.++||+.++++|||||.||+++++|++||++|..||+||+|+|++|+|.++... .+
T Consensus 325 dRAlfH~DNaYf~p~v~~~s~~~kTntvSnTAfRGFGGPQGm~~~Eriid~vA~alGkdpleiRk~NfYg~~~~n---~T 401 (781)
T COG4631 325 DRALFHADNAYFYPHVHILSRPLKTNTVSNTAFRGFGGPQGMLGIERIIDEVAYALGKDPLEIRKLNFYGKDGRN---VT 401 (781)
T ss_pred hhheeccccceeccceeeecceeeccccccccccccCCcchhhHHHHHHHHHHHHhCCCHHHHHhhhccCCCCCc---cC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865421 12
Q ss_pred CCCcc-ccCCHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeeeEeeeeeeccccc-----ccceEEEEeeCCcEEEEE
Q 000981 999 SAGEY-AEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSDGSVVVEV 1072 (1202)
Q Consensus 999 ~~g~~-~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~i~~DGsV~V~~ 1072 (1202)
|.++. .+..+.++|+++..+++|..|++++..||+..+..||||++.|.+||+++. +.+++|+|+.||||.++|
T Consensus 402 pYhQ~Vednii~ri~~ELeaSsdyaaRr~~i~aFNa~spv~krGlAlTPVKFGISFt~t~~NQAGALVHvY~DGSi~lNH 481 (781)
T COG4631 402 PYHQTVEDNIIARIVDELEASSDYAARREAIRAFNAASPVIKRGLALTPVKFGISFTATHYNQAGALVHVYTDGSIHLNH 481 (781)
T ss_pred ccccchHHhHHHHHHHHHHhcchHHHHHHHHHHhhccChhhhccccccceeeeEEEeeeeeccCceEEEEeccCeEEEcC
Confidence 33332 334688999999999999999999999999999999999999999999874 689999999999999999
Q ss_pred CCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000981 1073 GGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLR 1152 (1202)
Q Consensus 1073 g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~a 1152 (1202)
|++|||||++||++||+|++++| ++++|+|..++|+.+||++.|++|.+++.+|.|+++||+|+|+||..+|
T Consensus 482 GGTEMGQGL~tKvaQVvA~~fqv--------d~~rVkitaT~T~KVpNTSaTAASSGsDLNGmAa~dAa~qIk~RLv~fA 553 (781)
T COG4631 482 GGTEMGQGLYTKVAQVVAEEFQV--------DIDRVKITATTTDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAFA 553 (781)
T ss_pred CCcccccchhHHHHHHHHHHhCc--------ccceEEEeccccCCCCCCccccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC---------------CCCCHHHHHHHHHhCCCceEEEEeee
Q 000981 1153 ERLQGQM---------------GNVEWETLIQQVHICSSEALSTEFIL 1185 (1202)
Q Consensus 1153 ~~~~~~~---------------~~~~~~elv~~a~~~~v~l~a~~~~~ 1185 (1202)
++.|+.. ..+.|.++|++||..+|.|++.|||+
T Consensus 554 A~~~~V~~~~v~F~~n~vrig~~~~~F~~lv~~AY~arvqLsaaGFY~ 601 (781)
T COG4631 554 AEHWGVPEEDVAFLPNRVRIGGQELAFADLVKQAYFARVQLSAAGFYK 601 (781)
T ss_pred HHhcCCCHHHeEecCCeeEEcceecCHHHHHHHHhheeeeeecccccc
Confidence 9988631 35899999999999999999999997
No 9
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=100.00 E-value=5.7e-113 Score=1076.46 Aligned_cols=563 Identities=33% Similarity=0.479 Sum_probs=509.9
Q ss_pred CCCccccccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCCCCCccc
Q 000981 604 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTI 683 (1202)
Q Consensus 604 iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~~ 683 (1202)
+||+++|+|++.||||+++|++|+..+|||||+++||||++||+|++||+|+|++||||++|+|++|+| +.|.. ...
T Consensus 1 ~G~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~~iD~s~A~~~pGV~~V~t~~D~p--~~~~~-g~~ 77 (758)
T TIGR02965 1 VGTSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMDLSAVRAAPGVVDVLTAADIP--GENDI-SPI 77 (758)
T ss_pred CCCCccCcchHhhCceeeEcccCCCCCCCCEEEEEEecCCCceEEeecchHHHhcCCCcEEEEEHHHCC--CCCCC-CCC
Confidence 699999999999999999999999546899999999999999999999999999999999999999998 43321 122
Q ss_pred CCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCCcccCCccccCCCCCcccc
Q 000981 684 FGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKG 763 (1202)
Q Consensus 684 ~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~~a 763 (1202)
..++|+|+.++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|++++++...+. .....||++++
T Consensus 78 ~~~~~~la~~~Vry~Ge~va~VvA~~~~~A~~A~~~i~V~y--e~l-p~v~d~~~Al~~~a~~~~~~--~~~~~Gd~~~a 152 (758)
T TIGR02965 78 IHDDPLLADGKVEFVGQPIFAVIATSRDAARRAARLAKIEY--EEL-PAVLDIEEALAAGSRFVTPP--LTLERGDAEAA 152 (758)
T ss_pred CCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhhccEEEE--EcC-CccCCHHHHhcCCCCcccCc--ccccCCCHHHH
Confidence 35889999999999999999999999999999999999999 888 99999999999886432111 13578999999
Q ss_pred cccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCC
Q 000981 764 MNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKA 843 (1202)
Q Consensus 764 f~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~ 843 (1202)
|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||||+++++|||||+|.
T Consensus 153 f~~a~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~ 231 (758)
T TIGR02965 153 LAAAPHR-LSGEMRIGGQEHFYLEGQIALAVPGEDGGMHVWSSTQHPSEVQHLVAHVLGVPSHAVTVEVRRMGGGFGGKE 231 (758)
T ss_pred HhhCCEE-EEEEEEECCEeEEecCCceEEEEEcCCCCEEEEECCCChHHHHHHHHHHhCCChHHEEEEeCCCccCccccc
Confidence 9999996 999999999999999999999999976789999999999999999999999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhc
Q 000981 844 IKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNM 922 (1202)
Q Consensus 844 ~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~ 922 (1202)
......++.||++|+++||||||+|||+|+|+++++||++.+++|+|+++||+|++++++++.|+|+|.+.+. ++....
T Consensus 232 ~~~~~~~~~aa~~A~~~grPVk~~~sR~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~ 311 (758)
T TIGR02965 232 TQANLFACLAAVAARKTGRPVKLRPDRDDDMMITGKRHDFLVDYDVGFDDEGRILGVDIDMAARCGFSADLSGPVTDRAL 311 (758)
T ss_pred cccchHHHHHHHHHHHHCCCEEEEechHHhhhhccCccceEEEEEEEECCCCCEEEEEEEEeecCcccCCcchHHHHHHH
Confidence 7544556889999999999999999999999999999999999999999999999999999999999987654 444555
Q ss_pred cccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCc
Q 000981 923 IGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGE 1002 (1202)
Q Consensus 923 ~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~ 1002 (1202)
....++|+|||++++++.|+||++|+|+|||||.+|+.|++|++||++|++|||||+|||+||++++++.. .++.|.
T Consensus 312 ~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~Nl~~~g~~~---~~~~g~ 388 (758)
T TIGR02965 312 FHADNAYFLPDVTITSHPLKTNTQSNTAFRGFGGPQGMVAIERIMDEVARALGKDPLEVRKRNFYGKDERN---VTPYHQ 388 (758)
T ss_pred HhcCCcccCCceEEEEEEEEcCCCCCccccCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHcCCCCCCCC---cCCCce
Confidence 56779999999999999999999999999999999999999999999999999999999999999877532 234565
Q ss_pred cccC-CHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeeeEeeeeeeccccc-----ccceEEEEeeCCcEEEEECCcC
Q 000981 1003 YAEY-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSDGSVVVEVGGIE 1076 (1202)
Q Consensus 1003 ~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~i~~DGsV~V~~g~~e 1076 (1202)
++++ .+.+||+++++.++|++|++..++||..++|++||+|+++..++.++. +..+.|+|++||+|+|.+|.+|
T Consensus 389 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rGiG~a~~~~g~~~~~~~~~~~~a~v~i~~dG~v~v~~g~~e 468 (758)
T TIGR02965 389 TVEDNIIHEIIEELEESSDYAARRAAIRAFNAASPVLKKGIALTPVKFGISFTVTHLNQAGALVHVYTDGSIHLNHGGTE 468 (758)
T ss_pred eccCCcHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCceeEEEEeeeeccccccccccCccceEEEEeCCCcEEEEECCCC
Confidence 5444 899999999999999998877777888788889999998887776542 4678999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000981 1077 MGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQ 1156 (1202)
Q Consensus 1077 ~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~a~~~~ 1156 (1202)
||||++|+++||+||+||+ ++|+|+|..+||+.+|++++|+|||++.+.|.||++||++||+||+++|+++|
T Consensus 469 ~GQG~~T~laQIaAe~LGi--------~~d~V~v~~~DT~~~p~~~gT~gSr~t~~~g~Av~~Aa~~lr~~l~~~Aa~~l 540 (758)
T TIGR02965 469 MGQGLNTKVAQVVAEEFQV--------DIDRVKITATDTDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAFAAEKW 540 (758)
T ss_pred CCCCHHHHHHHHHHHHhCC--------CHHHEEEEecCccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred CC---------------CCCCCHHHHHHHHHhCCCceEEEEeeec
Q 000981 1157 GQ---------------MGNVEWETLIQQVHICSSEALSTEFILF 1186 (1202)
Q Consensus 1157 ~~---------------~~~~~~~elv~~a~~~~v~l~a~~~~~~ 1186 (1202)
+. .+.++|.|++..++..+..|.++++|..
T Consensus 541 ~~~~~~l~~~~g~v~~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~ 585 (758)
T TIGR02965 541 QVPAEDVRFAPNHVRVGEQRVPFAELVQQAYFARVQLSSTGFYKT 585 (758)
T ss_pred CCCHHHEEEECCEEEeCCCccCHHHHHHHHhhcCCCcEEEEEEcC
Confidence 52 2358999999988877778999999964
No 10
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=3e-109 Score=1039.77 Aligned_cols=548 Identities=22% Similarity=0.266 Sum_probs=489.3
Q ss_pred cccccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCCCCCcccCCCc
Q 000981 608 ITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSE 687 (1202)
Q Consensus 608 ~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~~~~~~ 687 (1202)
++|+|++.||||+++|++|+. +|||||+++||||++||+|++||+++|++||||++|+|++|+| . +.+......|+
T Consensus 1 ~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahA~I~siD~s~A~a~pGV~~V~t~~D~p--~-~~g~~~~~~d~ 76 (746)
T TIGR03194 1 VPLVDGVEKVTGKAKYTADLA-APGALVGRILRSPHAHARILAIDTSEAEALPGVIAVVTGADCP--V-PYGVLPIAENE 76 (746)
T ss_pred CcCcchHhhCccccccccCCC-CCCCEEEEEEecCCccEEEeeccHHHHHhCCCcEEEEeHHHCC--c-ccCCCCCCCCC
Confidence 479999999999999999998 6899999999999999999999999999999999999999998 2 32322223589
Q ss_pred ccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCC--ccc-CCcc---ccCCCCCcc
Q 000981 688 PLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV-PSFL---YPKPVGDIS 761 (1202)
Q Consensus 688 ~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~-~~~~---~~~~~Gdv~ 761 (1202)
|+|++++|||+|||||+|||+|+++|++|+++|+||| |+| |+++|+++|+++++. |+. +.|+ ....+||++
T Consensus 77 ~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~Al~~~a~~ih~~~~~Nv~~~~~~~~Gd~~ 153 (746)
T TIGR03194 77 YPLARDKVRYRGDPVAAVAAVDEVTAEKALALIKVEY--EEL-PAYMDPKAAMKAGAILLHDNKPGNIEREVHNEFGDVA 153 (746)
T ss_pred ccCCCCeEEEcCCeEEEEEECCHHHHHHHhcCCcEEE--ecC-CCcCCHHHHhcCCCCccCCCCCCcEEEEEeeccCCHh
Confidence 9999999999999999999999999999999999999 888 999999999998874 432 2343 235789999
Q ss_pred cccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCC
Q 000981 762 KGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFG 840 (1202)
Q Consensus 762 ~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~-dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG 840 (1202)
++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++||||+++++|||||
T Consensus 154 ~a~~~a~~v-ve~~~~~~~~~h~~mEp~~~~A~~~~~~~~l~v~~stQ~p~~~r~~va~~Lglp~~kVrV~~~~vGGgFG 232 (746)
T TIGR03194 154 AAFAEADLI-REKTFTCAEVNHAHMEPNATLAEYDPVRGMLTLNSVTQVPYYVHLKLARCLQMDSARIRVIKPFLGGGFG 232 (746)
T ss_pred HHhccCCEE-EEEEEEECCEeEEccCCCeEEEEEeCCCCeEEEEECCCchHHHHHHHHHHhCCCHHHeEEEcCCCcCccc
Confidence 999999996 99999999999999999999999985 5789999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chh
Q 000981 841 GKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMP 919 (1202)
Q Consensus 841 gK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~ 919 (1202)
+|... ..+++.||++|+++||||||+|||+|+|.++++||++.+++|+|+++||+|++++++++.|+|+|.+.+. ++.
T Consensus 233 ~K~~~-~~~~~~aal~a~~~grPVk~~~~ReE~~~~~~~R~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~ 311 (746)
T TIGR03194 233 ARVEP-LNFEIIAGLLARKAKGTVRLLQTREETFITHRGRPQTYVKMKIGLKKDGKITACAAEVVQRGGAYAGYGIVTIL 311 (746)
T ss_pred ccccc-chHHHHHHHHHHHhCCCEEEecchhhhhhcCCCCCceEEEEEEEECCCCeEEEEEEEEeecccccCCcchHHHH
Confidence 99864 3467889999999999999999999999999999999999999999999999999999999999998765 444
Q ss_pred hhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccC
Q 000981 920 SNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESS 999 (1202)
Q Consensus 920 ~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~ 999 (1202)
.....+.++|+|||++++++.|+||++|+|+|||||.||+.|++|++||++|++|||||+|||+||+.+.++. ++
T Consensus 312 ~~~~~~~g~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~lA~~lg~DPve~R~~N~~~~~~~-----~~ 386 (746)
T TIGR03194 312 YAGALLHGLYDIPAVKYDGYRVYTNTPPCGAMRGHGTVDTRAAFESLLDEMAAELGIDPFAIRRRNLLQAPTV-----TM 386 (746)
T ss_pred HHHHhcCCCcccceEEEEEEEEEcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCcCCCCC-----CC
Confidence 4455667999999999999999999999999999999999999999999999999999999999999876543 34
Q ss_pred CCccccC-CHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeeeEeeeeeecccc---------cccceEEEEeeCCcEE
Q 000981 1000 AGEYAEY-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTL---------RSTPGKVSILSDGSVV 1069 (1202)
Q Consensus 1000 ~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~---------~~~~a~V~i~~DGsV~ 1069 (1202)
.|+.+++ ++++||++++++++|++|++.. +++||+|+++..++.+. .+..+.|++++||+|+
T Consensus 387 ~g~~~~s~~~~~~l~~~~e~~~w~~~~~~~--------~~~rGiG~a~~~~~~~~~~~~~~~~~~~~~a~v~l~~dG~v~ 458 (746)
T TIGR03194 387 NDLRVMSYGLPECLEKVEQASGWEERKGRL--------PKGRGLGIACSHFVSGSAKPIHFTGEPHATVALKLDFDGGIT 458 (746)
T ss_pred CCceecCCCHHHHHHHHHHhcCchhhhhhc--------cccEEEEEEEEEEeccCCcccccCCCCCceEEEEEcCCccEE
Confidence 5655443 8999999999999998764421 24567777666654321 2578899999999999
Q ss_pred EEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHHHHHH
Q 000981 1070 VEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLT 1149 (1202)
Q Consensus 1070 V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~ 1149 (1202)
|.+|++|||||++|+++||+|+.||+ |+|+|+|..+||+.+|++++|+|||+|++.|.||++||++||+||+
T Consensus 459 v~~g~~e~GqG~~T~~~qiaAe~LGi--------p~d~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~~l~ 530 (746)
T TIGR03194 459 LLTGAADIGQGSSTIASQVAAEVLGV--------RLSRIRVISADSALTPKDNGSYSSRVTFMVGNAAIDAAEELKGVLV 530 (746)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCC--------CHHhEEEEccCCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC------------------CCCCCHHHHHHHHHhCCCceEEEEeee
Q 000981 1150 LLRERLQGQ------------------MGNVEWETLIQQVHICSSEALSTEFIL 1185 (1202)
Q Consensus 1150 ~~a~~~~~~------------------~~~~~~~elv~~a~~~~v~l~a~~~~~ 1185 (1202)
.+++++++. ...++|.+++..++...+.|.++++|.
T Consensus 531 ~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 584 (746)
T TIGR03194 531 AAAAKKLDAREEDIECAGEMFFVSGSADPGLSFQEVVKAALVDSGTITVKGTYT 584 (746)
T ss_pred HHHHHHhCCCHHHEEEECCEEEECCCCCCceeHHHHHHHhcccCCCceEEEEec
Confidence 999987741 234789999977776566899999985
No 11
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-111 Score=915.35 Aligned_cols=469 Identities=29% Similarity=0.517 Sum_probs=416.5
Q ss_pred ccEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccC
Q 000981 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (1202)
Q Consensus 11 ~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (1202)
.++|+|.+||+.+.+++++|+.|||||||.+.+|||||+||.||+||||||+|++..+... +.+++||+||.++.++||
T Consensus 6 ~~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlVgrl~~g~~-l~yeSVNACirfl~sL~G 84 (493)
T COG4630 6 RNTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLVGRLVDGGS-LRYESVNACIRFLGSLDG 84 (493)
T ss_pred cceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEEEeecCCCc-eeeeehhHHHHHHhhcCC
Confidence 4689999999999999999999999999999999999999999999999999999875433 889999999999999999
Q ss_pred ceEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 000981 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (1202)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRC 170 (1202)
++|+|||+|+.+++.||||||+|+++|||||||||||||||||+|+.+ .+.| +.+.|+++|.||||||
T Consensus 85 ~hvvTvE~L~~~~g~LHpVQqamvd~hGSQCGfCTPGFVmSLyal~~~-----~~~P-------~~a~i~kALqGNLCRC 152 (493)
T COG4630 85 THVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCTPGFVMSLYALWMN-----SPTP-------SRAAIEKALQGNLCRC 152 (493)
T ss_pred ceEEEehhhcCCCCCcCHHHHHHHhccCCccCCcCchHHHHHHHHHhc-----CCCC-------chhHHHHHhhCCcccc
Confidence 999999999987777999999999999999999999999999999954 4555 4899999999999999
Q ss_pred CCChhHHHHHHHhhhcccccccccccccccCCcccccccCCCCCCCCCCccCCCcccccc-cCCceeecC-CceEEecCC
Q 000981 171 TGYRPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE-NSSAMLLDV-KGSWHSPIS 248 (1202)
Q Consensus 171 tgy~~i~~a~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~~~~-~~~~~~P~s 248 (1202)
|||+||++|.+.++.-... ..|+|..-.... +. +.|.-. ....+.+.+ ...++.|.|
T Consensus 153 TGY~pI~~AA~~~~a~~~~-------------------a~fDPl~~~R~~-~~-~~L~A~~~~e~v~~~~~~~r~~~P~~ 211 (493)
T COG4630 153 TGYRPIIRAAEAIAALGPA-------------------AGFDPLAARRTA-IT-ARLRALRDTETVEVGSGDDRFIVPAT 211 (493)
T ss_pred cCchHHHHHHHHHhccCCc-------------------ccCChhhhhHHH-HH-HHHhhccCCcEEEecCCCceeEeecc
Confidence 9999999999976532100 001111000000 00 001000 012244444 678999999
Q ss_pred HHHHHHHHhhccCCCCCceeEEccCccceEe--eecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHHHHHh
Q 000981 249 VQELRNVLESVEGSNQISSKLVAGNTGMGYY--KEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEET 326 (1202)
Q Consensus 249 l~eal~ll~~~~~~~~~~a~lvaGgT~lgv~--k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~ 326 (1202)
++++..+++ .+|++++|||+||+|+| |.+.....+|.+++|+||+.|++..+.|+|||++|+++....|...
T Consensus 212 l~D~a~l~a-----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~~- 285 (493)
T COG4630 212 LADFADLLA-----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAGR- 285 (493)
T ss_pred HHHHHHHHh-----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHHHHHHHhh-
Confidence 999999999 57999999999999995 5557788999999999999999999999999999999999988776
Q ss_pred hhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhhhhc---
Q 000981 327 KEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE--- 403 (1202)
Q Consensus 327 ~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF~~--- 403 (1202)
+|.|.+.+.+|+|.||||+|||||||+|+||+ .|.+|+|+||||+|++.+++++|++||++||.
T Consensus 286 ----------~P~l~~L~~r~gg~qvRN~gTlGGNIangSPI---GDtPPaLIALgA~ltLr~g~~~RtlPLe~~Fi~Y~ 352 (493)
T COG4630 286 ----------YPALGELWDRFGGEQVRNMGTLGGNIANGSPI---GDTPPALIALGATLTLRSGDGRRTLPLEDYFIAYG 352 (493)
T ss_pred ----------CchHHHHHHHhcchhhhccccccccccCCCcC---CCCCchhhhcCcEEEEEecCCcccccHHHHHHHhh
Confidence 99999999999999999999999999999999 69999999999999999999999999999996
Q ss_pred CCCCCCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEecc
Q 000981 404 RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAF 483 (1202)
Q Consensus 404 ~~~l~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv 483 (1202)
+++++|||+|.+++||.+.+ ...|.+||++|| +++||+.|.+||.++++ +++|.++||+||||
T Consensus 353 kqdr~pGEfVe~v~vP~~~~----------~~rfa~yKisKR-rdeDISAv~~Af~l~Ld------g~~V~~arIa~GGm 415 (493)
T COG4630 353 KQDRQPGEFVEAVRVPLPAP----------SERFAAYKISKR-RDEDISAVCGAFALDLD------GGRVADARIAFGGM 415 (493)
T ss_pred hhccCcchhhhheecCCCCc----------chhhhhhhhhhh-ccchHHHHHhHheeeec------CCeeeeeeeecCcc
Confidence 78999999999999999876 688999999999 79999999999999997 46999999999999
Q ss_pred CCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CcHHHHhHhHHHHHHHHHHHHhhhc
Q 000981 484 GTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 550 (1202)
Q Consensus 484 ~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~-~s~~YR~~la~~L~~k~l~~~~~~~ 550 (1202)
+.+ |+|+.++|+.|.||+|++++++.|+..+..++.|.+|. +|+|||..+++||++|||++.....
T Consensus 416 AaT-PkRA~~~EaAL~Gk~wteatve~A~aAl~~D~tPltD~RAsaeYR~l~a~nlL~RfflEt~~~~ 482 (493)
T COG4630 416 AAT-PKRASEVEAALLGKPWTEATVEAAAAALAGDFTPLTDMRASAEYRALTAKNLLRRFFLETQGEA 482 (493)
T ss_pred ccC-ccchHHHHHHHcCCCccHHHHHHHHHHHhcCCCcccchhhhHHHHHHHHHHHHHHHhhhccCCc
Confidence 999 99999999999999999999999999999999999998 7999999999999999999987754
No 12
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=100.00 E-value=6.6e-109 Score=1041.07 Aligned_cols=571 Identities=23% Similarity=0.281 Sum_probs=499.4
Q ss_pred CCCCccccccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCCC---C
Q 000981 603 PVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI---G 679 (1202)
Q Consensus 603 ~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~---~ 679 (1202)
.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|+|||+++|++||||++|+|++|+| +.|. +
T Consensus 2 ~vG~~~~r~d~~~kvtG~~~Y~~D~~-~~gmL~a~~~rSp~aharI~siD~~~A~~~pGV~~Vvt~~D~p--~~~~~~~~ 78 (759)
T PRK09970 2 AIGKSIMRVDAIAKVTGRAKYTDDYV-MAGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAVFTWEDVP--DIPFPTAG 78 (759)
T ss_pred CCCCCCcCcchHHhCcCCccccccCC-CCCCEEEEEEcCCCceEEEeeeeHHHHHhCCCcEEEEeHHHcC--Cccccccc
Confidence 58999999999999999999999998 6999999999999999999999999999999999999999998 4332 1
Q ss_pred Cc------ccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCC--cccCCc
Q 000981 680 SK------TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSF 751 (1202)
Q Consensus 680 ~~------~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~~~~ 751 (1202)
.. ....++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++. |+...|
T Consensus 79 ~~~~~~~~~~~~~~~~la~~~Vr~~G~~VAaVvA~~~~~A~~A~~~i~Vey--e~l-p~v~~~~~Al~~~a~~ih~~~~n 155 (759)
T PRK09970 79 HPWSLDPNHRDIADRALLTRHVRHHGDAVAAVVARDELTAEKALKLIKVEY--EEL-PVITDPEAALAEGAPPIHNGRGN 155 (759)
T ss_pred cccCCCCCCCCCCCccCcCCEEEEcCCeEEEEEeCCHHHHHHHhCCCcEeE--EeC-CccCCHHHHhCCCCCccCCCCCc
Confidence 00 0113789999999999999999999999999999999999999 888 999999999988773 432133
Q ss_pred cc---cCCCCCcccccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccE
Q 000981 752 LY---PKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNV 828 (1202)
Q Consensus 752 ~~---~~~~Gdv~~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV 828 (1202)
+. ....||++++|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||
T Consensus 156 i~~~~~~~~Gd~~~a~~~a~~v-ve~~y~~~~~~h~~mEp~~~iA~~~~~g~l~v~~stQ~p~~~~~~ia~~Lglp~~~V 234 (759)
T PRK09970 156 LLKQSTMSTGNVQQTIKAADYQ-VQGHYETPIVQHCHMENVTSYAYMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGKV 234 (759)
T ss_pred eeeeeeeccCChhHhhccCCEE-EEEEEEECCEeEeccCCceEEEEECCCCCEEEEECCCcHHHHHHHHHHHhCCCHHHE
Confidence 32 35789999999999996 999999999999999999999999876789999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCCCCccHHHHHHHHHHHhc-CCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEee
Q 000981 829 RVITRRVGGAFGGKAIKAMPVATACALAAYKL-CRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILID 907 (1202)
Q Consensus 829 ~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~-gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d 907 (1202)
||+++++|||||+|.... ..+.||++|+++ ||||||+|||+|+|+.+++||++.++||+|+++||+|+|++++++.|
T Consensus 235 rV~~~~vGGgFG~K~~~~--~~~~aa~la~~~~grPVk~~~~R~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d 312 (759)
T PRK09970 235 RVIKPYVGGGFGNKQDVL--EEPLAAFLTSKVGGRPVKVSLSREECFLATRTRHAFTIDIKMGVNRDGTLKGYSLDVLSN 312 (759)
T ss_pred EEEeCCCCCCcCcccccC--HHHHHHHHHHHhcCCCeEEeechhHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEeec
Confidence 999999999999998643 245677888888 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCc-chhhhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhc
Q 000981 908 AGLSPDVSP-IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINL 986 (1202)
Q Consensus 908 ~Ga~~~~s~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl 986 (1202)
+|+|.+++. ++......+.++|+|||++++++.|+||++|+|||||||.||++|++|++||++|++|||||+|||+||+
T Consensus 313 ~Gay~~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~N~ 392 (759)
T PRK09970 313 TGAYASHGHSIASAGGNKVAYLYPRCAYKYSSKTVYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEFRLRNA 392 (759)
T ss_pred cccCCCcchHHHHHHHhhcCCCccCceEEEEEEEEECCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhC
Confidence 999998765 4444455667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCcccc-CCHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeeeEeeeeeeccccc-----ccceEE
Q 000981 987 HTHKSLNLFYESSAGEYAE-YTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKV 1060 (1202)
Q Consensus 987 ~~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V 1060 (1202)
+++++.++. .|...+ .++++||+++++.++|+++++..+. .+.|++||+|+++..++.++. .+.+.|
T Consensus 393 ~~~g~~~~~----~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~v 465 (759)
T PRK09970 393 AREGDANPL----SGKRIYSAGLPECLEKGRKIFEWDKRRAECKN---QQGNLRRGVGVACFSYTSGTWPVGLEIAGARL 465 (759)
T ss_pred CCCCCcCCC----CCeeecCCCHHHHHHHHHHhcCchhhhHhHhh---hcCCceEEEEEEEEEEeecCCCCCCCcceEEE
Confidence 987644311 133333 4899999999999999987654332 233577899988877765443 478999
Q ss_pred EEeeCCcEEEEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcC-CCccccCCccCccchHHHHHHHHHHH
Q 000981 1061 SILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQA-DTLSVIQGGFTAGSTTSEASCQVVRD 1139 (1202)
Q Consensus 1061 ~i~~DGsV~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~-dT~~~p~~~~t~gS~~t~~~g~Av~~ 1139 (1202)
+|++||+|+|.+|.+|||||++|+++||+||+||+ |+++|+|..+ ||+.+|++++|+|||++.+.|.|+++
T Consensus 466 ~i~~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi--------~~~~V~v~~~~dT~~~p~~~gt~aSr~t~~~g~Av~~ 537 (759)
T PRK09970 466 LMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGI--------PVSDVRVISTQDTDVTPFDPGAYASRQSYVAGPAIRK 537 (759)
T ss_pred EEccCceEEEEECCCCcCCCHHHHHHHHHHHHhCC--------CHHhEEEEccCCCCCCCCCCCCchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999 9999999988 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCC------------------CCCCHHHHHHHHHhC---CCceEEEEeee-----cCcccccc
Q 000981 1140 CCNILVERLTLLRERLQGQM------------------GNVEWETLIQQVHIC---SSEALSTEFIL-----FNFVCQRT 1193 (1202)
Q Consensus 1140 Ac~~l~~~l~~~a~~~~~~~------------------~~~~~~elv~~a~~~---~v~l~a~~~~~-----~~~~~~~~ 1193 (1202)
||++||+||+.+++++++.. +.++|.+++..+|.. ...+.++++|+ +.|.++..
T Consensus 538 Aa~~lr~~l~~~aa~~l~~~~~~l~~~~G~v~~~~~~~~~~~~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a 617 (759)
T PRK09970 538 AALELKEKILAHAAVMLHQSAMNLDIIDGHIVVKRPGEPLMSLEELAMDAYYHPERGGQITAESSIKTTTNPPAFGCTFV 617 (759)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHEEEECCEEEECCCCCccccHHHHHHHhhccccCCCceeEEEEecCCCCCCceEEEEE
Confidence 99999999999998877411 148899999888763 34688888876 34555554
Q ss_pred eeee
Q 000981 1194 CTDY 1197 (1202)
Q Consensus 1194 ~~~~ 1197 (1202)
++++
T Consensus 618 eVeV 621 (759)
T PRK09970 618 DVEV 621 (759)
T ss_pred EEEE
Confidence 4443
No 13
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=100.00 E-value=7.7e-108 Score=1028.37 Aligned_cols=532 Identities=23% Similarity=0.328 Sum_probs=470.0
Q ss_pred CCCCccc-cccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCC-CCC
Q 000981 603 PVGEPIT-KSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN-IGS 680 (1202)
Q Consensus 603 ~iGk~~~-r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n-~~~ 680 (1202)
.|||+++ |+|++.||||+++|++|++ +|||||++++|||++||+|++||+++|++||||++|+|++|+| +.| .+
T Consensus 2 ~iG~~~~~R~d~~~kvtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~siD~s~A~a~pGV~~V~t~~D~p--~~~~~g- 77 (768)
T TIGR03196 2 GIGKPSRVRPDGPDKVTGEFKYMGDLR-FPGMLHAKTLRSAHAHAEIRRVCTDAAEKLEGVQAMVTAADVP--GLARFG- 77 (768)
T ss_pred cCCCcCCcCcchHhhCcccccccccCC-CCCcEEEEEEecCCCcEEEeeccHHHHHhCCCcEEEEehHHCC--CCCCCC-
Confidence 4899999 9999999999999999998 6899999999999999999999999999999999999999998 333 22
Q ss_pred cccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCC--cccCCccc---cC
Q 000981 681 KTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFLY---PK 755 (1202)
Q Consensus 681 ~~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~~~~~~---~~ 755 (1202)
....++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++. |+ +.|+. ..
T Consensus 78 -~~~~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~a~~~~a~~i~~-~~ni~~~~~~ 152 (768)
T TIGR03196 78 -IIIADQPVFAADEIRYAGDAIAAVAAEDEEIAEAALAAIEVDY--EEL-APMDDPDKALQPDAEPLHE-AGNILHEAEF 152 (768)
T ss_pred -ccCCCcccccCCEEEEcCCeEEEEEECCHHHHHHHhccCceEE--EeC-CCcCCHHHHhcCCCCeECC-CCcCcceeee
Confidence 1235889999999999999999999999999999999999999 788 889999999987653 43 23332 35
Q ss_pred CCCCcccccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEccc
Q 000981 756 PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRV 835 (1202)
Q Consensus 756 ~~Gdv~~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~v 835 (1202)
.+||++++|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||||+++++
T Consensus 153 ~~Gd~~~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~v 231 (768)
T TIGR03196 153 RHGDPDEGFAAGDTV-FEDQYELGMQDHAFLAPEAALAMPAADGGFDLRAATQHGHKDREQIAACFDIPEEKIRITLAGM 231 (768)
T ss_pred ccCCHhHHhccCCEE-EEEEEEeCCeeeeecCCceEEEEEcCCCCEEEEECCCchHHHHHHHHHHhCCCHHHEEEEeCCC
Confidence 789999999999996 9999999999999999999999999777899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCC
Q 000981 836 GGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS 915 (1202)
Q Consensus 836 GGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s 915 (1202)
|||||+|.... ..+.||++|+++||||||+|||+|+|+.+++||++.+++|+|+++||+|++++++++.|+|+|.+++
T Consensus 232 GGgFG~K~~~~--~~~~aa~~A~~~gRPVk~~~sReE~~~~~~~r~~~~~~~k~g~~~dG~i~a~~~~~~~d~Gay~~~~ 309 (768)
T TIGR03196 232 GGAFGGKDDLN--IQIHAALLALASGLPVKIAQDRKESFLGGIHRHPAKITFKHGADADGNLLAHDAKIVADGGAYASLG 309 (768)
T ss_pred CCccCCccccc--HHHHHHHHHHHhCCCEEEEechHHhhhcCCCCCCeEEEEEEEECCCCcEEEEEEEEEecccccCCcc
Confidence 99999998643 3567899999999999999999999999999999999999999999999999999999999998876
Q ss_pred c-chhhhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccc
Q 000981 916 P-IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNL 994 (1202)
Q Consensus 916 ~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~ 994 (1202)
. ++.....++.++|+|||++++++.|+||++|+|||||||.+|+.|++|++||++|++|||||+|||++|+.++++..
T Consensus 310 ~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~- 388 (768)
T TIGR03196 310 PAVLAFAVEHAAGPYRIPNAHLEGISVFTNNGPAGAFRGFGGNQITFAHEAHLDRLADALGIDPLDLRRKNARKPGDLG- 388 (768)
T ss_pred HHHHHHHHHhcCCCcccceEEEEEEEEEcCCCCCCccCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCcC-
Confidence 5 33444456679999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred ccccCCCccccCCHHHHHHHHHHhCCch-----hHHHHHHHHh------hcCCcceeeeEeeeeeeccccc-----c--c
Q 000981 995 FYESSAGEYAEYTLPLIWDKLAVSSSFN-----QRTEMIKEFN------RSNLWRKKGVCRLPIVHEVTLR-----S--T 1056 (1202)
Q Consensus 995 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~-----~r~~~~~~~n------~~~~~~~rGia~~~~~~~~~~~-----~--~ 1056 (1202)
+++.+.+. .+.+++||++++++++|+ ++......|+ ..+.+++||+||+++.++.+.. + .
T Consensus 389 ~~g~~~~~--~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~g~~~rGiG~a~~~~~~~~~~~~~~~~~~ 466 (768)
T TIGR03196 389 PLEHRIAA--PDGAAEVIEAIASRPLPKAPILKKANRAVTALPGGRPAAAECGRLQRGTGAAIAMHGGGFGEGMDDAAVA 466 (768)
T ss_pred CCCcccCC--cCCHHHHHHHHHhhccccchhhhhhhhhhhhhhhhhhhhhhcCCeeEEEEEEEEEecccCCCCccccCCc
Confidence 23222221 347899999999999998 3322221221 1122346788888777665432 2 2
Q ss_pred ceEEEEeeCCc--EEEEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHH
Q 000981 1057 PGKVSILSDGS--VVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASC 1134 (1202)
Q Consensus 1057 ~a~V~i~~DGs--V~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g 1134 (1202)
.+.|+|++||+ |+|.+|++|||||++|+++||+||+||+ |+|+|+|..+||+.+|++++|+|||+|.+.|
T Consensus 467 ~a~v~l~~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G 538 (768)
T TIGR03196 467 GARLELAEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGC--------AAEDISIAIADTAKGPKAGSSSASRGTSMSG 538 (768)
T ss_pred cEEEEEeCCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCC--------CHHHEEEecCCCCCCCCCCCCchhhhhHhHH
Confidence 78999999996 8888999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 000981 1135 QVVRDCCNILVERLTLLRERLQG 1157 (1202)
Q Consensus 1135 ~Av~~Ac~~l~~~l~~~a~~~~~ 1157 (1202)
.||++||++||+||+++++++++
T Consensus 539 ~Av~~Aa~~l~~kl~~~aa~~l~ 561 (768)
T TIGR03196 539 GAIQGACAAFAAQLKARAAETAG 561 (768)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887654
No 14
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=100.00 E-value=1.4e-107 Score=1029.21 Aligned_cols=567 Identities=20% Similarity=0.186 Sum_probs=484.3
Q ss_pred cccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCCCCCcc-cC-CCccc
Q 000981 612 GAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKT-IF-GSEPL 689 (1202)
Q Consensus 612 d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~~-~~-~~~~~ 689 (1202)
|++++|||+++|++|++ +|||||+++||||++||+|++||+|+|++||||++|+|++|+| +.+..... .. .++|+
T Consensus 1 e~~r~vtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~~ID~s~A~~~pGV~~V~t~~D~p--~~~~~~~~~~~~~~~~~ 77 (770)
T TIGR02416 1 EDIRFIQGKGNYVDDVK-LPGMLHGDIVRSPHAHARIKSIDTSAAKALPGVFAVLTAADLK--PLNLHWMPTLAGDVQAV 77 (770)
T ss_pred CCcccccccccccccCC-CCCCEEEEEEcCCCccEEEecccHHHHhhCCCcEEEEEHHHcC--CccCCcCCCCCCCCccc
Confidence 56789999999999998 6999999999999999999999999999999999999999998 33221101 11 23799
Q ss_pred ccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCC--ccc-CC------------cc-c
Q 000981 690 FADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV-PS------------FL-Y 753 (1202)
Q Consensus 690 ~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~-~~------------~~-~ 753 (1202)
|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |||+|+++|+++++. |+. +. +. .
T Consensus 78 la~~~Vry~Ge~Va~VvA~t~~~A~~A~~~v~V~y--e~l-p~v~d~~~A~~~~a~~ih~~~~~~~~~~~~~~n~~~~~~ 154 (770)
T TIGR02416 78 LADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY--EPL-PVVIDPFKALEPDAPVLREDLKGKTTGAHGARKHHNHIF 154 (770)
T ss_pred CcCCEEEEcCCcEEEEEECCHHHHHHHhccceeee--ecC-CccCCHHHHhcCCCceecCCCCCccccccccccccceee
Confidence 99999999999999999999999999999999999 788 999999999988764 321 11 11 1
Q ss_pred cC---CCCCcccccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCccEE
Q 000981 754 PK---PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVR 829 (1202)
Q Consensus 754 ~~---~~Gdv~~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~-dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~ 829 (1202)
.. ..||++++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++|||
T Consensus 155 ~~~~gd~gd~~~af~~a~~v-ve~~~~~~~~~h~~mEp~~~iA~~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~Vr 233 (770)
T TIGR02416 155 RWEIGDKAATDAVFAKAEVV-VKQMMTYPRVHPSPLETCGCVASMDPIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIR 233 (770)
T ss_pred EEecCCccchhHHhccCCEE-EEEEEEeCceeeEcCCCCeEEEEEeCCCCeEEEEECCCcHHHHHHHHHHHhCCCHHHEE
Confidence 12 345679999999996 99999999999999999999999985 67899999999999999999999999999999
Q ss_pred EEEcccCCCCCCCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCC
Q 000981 830 VITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAG 909 (1202)
Q Consensus 830 V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~G 909 (1202)
|+++++|||||+|..... ..+.||++|+++||||||+|||+|+|+.+++||++.+++|+|+|+||+|++++++++.|+|
T Consensus 234 V~~~~vGGgFG~K~~~~~-~~~~aa~~A~~~gRPVk~~~sR~E~~~~~~~r~~~~~~~k~g~d~dG~i~a~~~~~~~d~G 312 (770)
T TIGR02416 234 VISPDIGGGFGNKVGIYP-GYVCAIVASIVLGVPVKWVEDRMENLSTTSFARDYHMTGELAATKDGKILAMRCNVLADHG 312 (770)
T ss_pred EEcCCCCCCccccccccc-HHHHHHHHHHHhCCCEEEecchHHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEEeecc
Confidence 999999999999986433 3345889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc-chhhhcc--ccCCCCccCcEEEEEEEeecCCCCCC-ccC-CCChhHHHHHHHHHHHHHHHHcCCCHHHHHHh
Q 000981 910 LSPDVSP-IMPSNMI--GALKKYDWGALHFDIKVCRTNLPSRS-AMR-APGEVQGSFIAEAVIEHVASTLSMEVDFVRNI 984 (1202)
Q Consensus 910 a~~~~s~-~~~~~~~--~~~~~Y~ipn~~~~~~~v~TN~~~~g-a~R-G~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~ 984 (1202)
+|.+++. ++..... .+.++|+|||++++++.|+||++|.+ +|| |||.||+.|++|++||++|++|||||+|||+|
T Consensus 313 ay~~~~~~~~~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~gta~Rgg~G~pq~~fa~E~~mD~~A~~lg~DP~e~R~~ 392 (770)
T TIGR02416 313 AFDACADPSKWPAGFFNICTGSYDIPVAHCAVDGVYTNKAPGGVAYRCSFRVTEAVYAIERAVDTLAQRLEMDSADLRIK 392 (770)
T ss_pred ccCCCccchhhhhhhhhhcCCccccceEEEEEEEEECCCCCCCCccccCCccHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 9987654 3222222 35799999999999999999999997 999 89999999999999999999999999999999
Q ss_pred hcCCCCCcccccccCCCccccC-CHHHHHHHHHHhCCchhHHHHHHHHhhcCCc-ceeeeEeeeeeeccccc--------
Q 000981 985 NLHTHKSLNLFYESSAGEYAEY-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLW-RKKGVCRLPIVHEVTLR-------- 1054 (1202)
Q Consensus 985 Nl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~-~~rGia~~~~~~~~~~~-------- 1054 (1202)
|++++++. ++.++.|.++++ .+++||+++++.++|++++++.+.+++.+++ ..||+|++.+.+..+..
T Consensus 393 N~~~~~~~--p~~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~G~a~~~~~~~~~~~~~~~~~ 470 (770)
T TIGR02416 393 NFIQPEQF--PYTAPLGWEYDSGDYPLAMKKAMDTVDYHQLRAEQAAKRKRGETRELMGIGISFFTEIVGAGPSKNCDIL 470 (770)
T ss_pred hCCCCccC--ccccCCCceecCCCHHHHHHHHHHhcCchhhHHHHHHHHhcCCCCceEEEEEEEEEEeccCCCccccccc
Confidence 99987643 466667766554 8999999999999999876655545444443 23566665544433221
Q ss_pred ----ccceEEEEeeCCcEEEEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHH
Q 000981 1055 ----STPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTS 1130 (1202)
Q Consensus 1055 ----~~~a~V~i~~DGsV~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t 1130 (1202)
...+.|+|++||+|+|.+|++|||||++|+++||+|++||+ |+|+|+|..+||+.+|++++|+|||+|
T Consensus 471 ~~~~~~~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~gt~~Sr~t 542 (770)
T TIGR02416 471 GVGMFDSCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGI--------PAEDIMVEEGDTDTAPYGLGTYGSRST 542 (770)
T ss_pred ccCccceEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCC--------CHHHEEEEecCCCCCCCCCCCchhHHH
Confidence 24588999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC------------------CCCCCHHHHHHHHHhC-----CCceEEEEeeec-
Q 000981 1131 EASCQVVRDCCNILVERLTLLRERLQGQ------------------MGNVEWETLIQQVHIC-----SSEALSTEFILF- 1186 (1202)
Q Consensus 1131 ~~~g~Av~~Ac~~l~~~l~~~a~~~~~~------------------~~~~~~~elv~~a~~~-----~v~l~a~~~~~~- 1186 (1202)
.+.|.||++||++||+||+++|+++++. ...++|.+++..+|.. ..+|.++++|..
T Consensus 543 ~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 622 (770)
T TIGR02416 543 PVAGAATALAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGDPSKFKTMADIAWAAYNSPPPGLEPGLEAVNYYDPP 622 (770)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEECCCCCCcccHHHHHHHHhccCccCcCCceEEEEEeCCC
Confidence 9999999999999999999998877531 1237999999888753 235999999953
Q ss_pred ----Ccccccceee
Q 000981 1187 ----NFVCQRTCTD 1196 (1202)
Q Consensus 1187 ----~~~~~~~~~~ 1196 (1202)
.|.|+--+++
T Consensus 623 ~~~~~~ga~~~eVe 636 (770)
T TIGR02416 623 NMTYPFGAYFCVVD 636 (770)
T ss_pred CCCCCceeEEEEEE
Confidence 3444444443
No 15
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=100.00 E-value=1.3e-107 Score=970.96 Aligned_cols=458 Identities=30% Similarity=0.521 Sum_probs=410.5
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceE
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLI 93 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i 93 (1202)
|+|+|||+++++++++|+++|++|||+++||||||.||++|+||||||+|+++|+.+ ++.+++|||||+|+++++|++|
T Consensus 1 i~~~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~~~~~~~~-~~~~~~v~sCl~~~~~~~g~~i 79 (467)
T TIGR02963 1 IRFFLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVVGELVDGG-KLRYRSVNACIQFLPSLDGKAV 79 (467)
T ss_pred CEEEECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEEEecCCCC-cccceEEehhhhhHHhcCCCEE
Confidence 579999999999668999999999999999999999999999999999999998766 8889999999999999999999
Q ss_pred EEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCC
Q 000981 94 TTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGY 173 (1202)
Q Consensus 94 ~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRCtgy 173 (1202)
+|||||+++++.+||||++|+++|++|||||||||||++++||++ +|+| |++||+++|+|||||||||
T Consensus 80 ~TvEgl~~~~~~l~~~q~a~~~~~~~QCG~CtpG~vm~~~~ll~~-----~~~~-------~~~~i~~~l~gnlCRCtgy 147 (467)
T TIGR02963 80 VTVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMSLYALYKN-----SPAP-------SRADIEDALQGNLCRCTGY 147 (467)
T ss_pred EecCCCCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHhc-----CCCC-------CHHHHHHHhcCCcccCCCC
Confidence 999999864568999999999999999999999999999999943 5666 4999999999999999999
Q ss_pred hhHHHHHHHhhhcccccccccccccccCCcccccccCCCCCCCCCCccCCCcccccc-cCCceeecC-CceEEecCCHHH
Q 000981 174 RPIADACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE-NSSAMLLDV-KGSWHSPISVQE 251 (1202)
Q Consensus 174 ~~i~~a~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~~~~-~~~~~~P~sl~e 251 (1202)
++|++|++.++ +.. | ++++++.++. +| ++|... .+..+.+.+ +.+||+|+||+|
T Consensus 148 ~~i~~a~~~~~-~~~--------~-------------~~~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~P~sl~E 203 (467)
T TIGR02963 148 RPILDAAEAAF-DYP--------C-------------SDPLDADRAP-II-ERLRALRAGETVELNFGGERFIAPTTLDD 203 (467)
T ss_pred HHHHHHHHHHH-hCC--------C-------------CCcCCcchhh-hh-hHHHhcCCCcceeecCCCceEECCCCHHH
Confidence 99999995433 211 1 2345555433 45 334321 233455555 789999999999
Q ss_pred HHHHHhhccCCCCCceeEEccCccceE-eee-cccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHHHHHhhhh
Q 000981 252 LRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEF 329 (1202)
Q Consensus 252 al~ll~~~~~~~~~~a~lvaGgT~lgv-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~ 329 (1202)
|+++|+ ++++++++|||||+++ ++. ...++.+|||++|+||+.|+.++++|+|||+|||+++++.+++.
T Consensus 204 a~~ll~-----~~~~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~~l~~~---- 274 (467)
T TIGR02963 204 LAALKA-----AHPDARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYAALAKR---- 274 (467)
T ss_pred HHHHHh-----hCCCCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHHHHHHH----
Confidence 999999 4688999999999988 333 25789999999999999999999999999999999998877665
Q ss_pred hhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhhhhc---CCC
Q 000981 330 HSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE---RPP 406 (1202)
Q Consensus 330 ~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF~~---~~~ 406 (1202)
+|.|++++++|||+||||+|||||||++++|+ ||++|+|+||||+|+|.+.+|+|+||++|||. ++.
T Consensus 275 -------~p~L~~a~~~ias~qIRN~aTiGGNI~~asP~---sD~~p~LlALdA~v~l~~~~G~R~vpl~dF~~g~~kt~ 344 (467)
T TIGR02963 275 -------YPELGELLRRFASLQIRNAGTLGGNIANGSPI---GDSPPALIALGARLTLRKGEGRRTLPLEDFFIDYGKTD 344 (467)
T ss_pred -------hHHHHHHHHHhCCHHHcCceecccccccCCCc---hHHHHHHHHcCCEEEEEcCCCcEEEeHHHhhccccccc
Confidence 89999999999999999999999999999999 99999999999999999999999999999997 689
Q ss_pred CCCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEeccCCc
Q 000981 407 LDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTK 486 (1202)
Q Consensus 407 l~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv~~~ 486 (1202)
|+++|||++|+||.+.. +..+.+||+++| +++|||+||+||.++++ +++|+++||+||||+++
T Consensus 345 L~~~EiI~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~~~------~~~i~~~ria~Ggva~~ 407 (467)
T TIGR02963 345 RQPGEFVEALHVPRPTP----------GERFRAYKISKR-FDDDISAVCAAFNLELD------GGVVAEIRIAFGGMAAT 407 (467)
T ss_pred CCCCceEEEEEecCCCC----------CCceEEEEeccc-ccccceeeEEEEEEEEc------CCeEeEEEEEEecCCCC
Confidence 99999999999997654 467889999999 79999999999999996 36899999999999999
Q ss_pred ccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CcHHHHhHhHHHHHHHHHHH
Q 000981 487 HAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGS 545 (1202)
Q Consensus 487 ~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~-~s~~YR~~la~~L~~k~l~~ 545 (1202)
|+|+.++|++|.||+|+++++++|++.+.+++.|.+|. +|++||++|+.+|++||+.+
T Consensus 408 -p~r~~~~E~~L~G~~~~~~~l~~a~~~l~~~~~p~~d~r~sa~YR~~la~~l~~r~~~~ 466 (467)
T TIGR02963 408 -PKRAAATEAALLGKPWNEATVEAAMAALAGDFTPLSDMRASAEYRLLTAKNLLRRFFLE 466 (467)
T ss_pred -ceehHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887 89999999999999999976
No 16
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=100.00 E-value=7.6e-79 Score=762.34 Aligned_cols=567 Identities=25% Similarity=0.322 Sum_probs=483.4
Q ss_pred CCCCCccccccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCCCCCc
Q 000981 602 YPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK 681 (1202)
Q Consensus 602 ~~iGk~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~ 681 (1202)
..+|+++.|.|+..||||+++|++|+. .|||+|++|||||++|++|++||.++|+++|||++|+|++|+|. ..+. ..
T Consensus 4 ~~~gr~~~R~~~~~~vtG~~~y~~d~~-~~~~~~~~~vrs~~a~a~i~~id~~ea~~~~gv~av~ta~~l~~-~~~~-~~ 80 (731)
T COG1529 4 EIIGRSVLRADGLGKVTGKGRYADDIV-APGMLYAAFVRSPYAHARIVSIDVSEAQGLPGVLAVITAEELPA-WSPV-RV 80 (731)
T ss_pred ccCCCCcccccchhheeeeeheehhhc-CCCCceEEEEeccCCceEEEEechHHHhhCCCeEEEechhhCcc-cccc-cc
Confidence 579999999999999999999999998 68999999999999999999999999999999999999999983 1111 00
Q ss_pred ccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhcCCCcccCC-cc-ccCCCCC
Q 000981 682 TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPS-FL-YPKPVGD 759 (1202)
Q Consensus 682 ~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~-~~-~~~~~Gd 759 (1202)
......++|+.++|+|+||||++|+|+|+++|++|+++|+|+| +++ |+++++++|+.++.....+. |+ .....||
T Consensus 81 ~~~p~~~~l~~~~v~~~G~~vA~vva~d~~~A~~aa~~v~V~y--e~l-~~~v~~~~a~~~~~~~ih~~~n~~~~~~~g~ 157 (731)
T COG1529 81 ELAPADEVLARGKVRYTGEPVAAVVAEDEYQARAAAELVLVEY--EAL-PPVVDPEEALAEDAPVIHDELNIARDATFGD 157 (731)
T ss_pred ccCCcchhhccCceEEeCCeEEEEEeCCHHHHHHHHhhceeee--ccC-CCcCCHHHHhcCCCccccccccccccccccc
Confidence 1111122789999999999999999999999999999999999 888 99999999999876422111 22 2456778
Q ss_pred cccccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCC
Q 000981 760 ISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAF 839 (1202)
Q Consensus 760 v~~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgF 839 (1202)
.+ +|++|+++ ++.+|.++++.|.+|||++++++|+++++|++|++||+|+.+|..++++|++|+++|+|+.+++||||
T Consensus 158 ~~-a~a~A~~~-v~~~~~~~~~~~~~~E~~g~~a~~~d~~~lt~~~~tQ~~~~~~~~l~~~l~~p~~~vrvi~~dvGggf 235 (731)
T COG1529 158 DD-AFAAAAVV-VEAPYKTPRKDPNPMEPHGVVAVPDDGDKLTVWASTQIPHRLRGMLAAVLGIPPSKVRVISPDVGGGF 235 (731)
T ss_pred ch-hhhcCcEE-eeeeeeccCcCccCcccccceeeEcCCCeEEEEEccCCchHHHHHHHHHhCCCHHHeEEecCCCCccc
Confidence 88 99999996 99999999999999999999999993338999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-ch
Q 000981 840 GGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IM 918 (1202)
Q Consensus 840 GgK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~ 918 (1202)
|+|.. .+.....++++|+++||||||+++|+|.|+.+++||+...++++++++||+|+++.++++.|.|+|. +. +.
T Consensus 236 G~K~~-~~~~~~~~~~aa~~~grpVk~~~tR~e~~~~~~~~~~~~~~~~~~a~~dg~l~~~~~~~~~~~Gay~--~~~~~ 312 (731)
T COG1529 236 GSKGV-VYVEEILAALAAVVAGRPVKWIETREELFVATGHRRATLIDVKLGADKDGRLLAIKGTVAADTGAYN--GPTVP 312 (731)
T ss_pred CCccc-ceeHHHHHHHHHHhcCCCeEEecchHHhhhccCCCCCceEEeeeecCcCCcEEeeeeeEEecCCCcc--ccchh
Confidence 99986 4556677789999999999999999999999999999999999999999999999999999999997 33 22
Q ss_pred hhhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccc
Q 000981 919 PSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYES 998 (1202)
Q Consensus 919 ~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~~~~~~~ 998 (1202)
......+.++|.|+|+++..+.++||++|+++|||+|.++++|++|++||+||++|||||+|||++|++..+...
T Consensus 313 ~~~~~~~~g~Y~i~~~~~~~~~v~tn~~p~~~~Rg~g~~~~~~a~E~~~d~lA~~Lgidp~eiR~~n~~~~g~~~----- 387 (731)
T COG1529 313 AAAAGLARGPYKIEAVYIEPYLVHTNMPPNGAYRGAGRPEGTFALERAVDELAEELGIDPVEIRLRNLIRGGPFG----- 387 (731)
T ss_pred HHHHHhcCCceecccceeeeEEEEcCCCCCcccccCCCchhHHHHHHHHHHHHHHhCCCHHHHhhhhccccCCCC-----
Confidence 334456678999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred CCCcccc-CCHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeeeEeeeeeecccccc-cceEEEEeeCCcEEEEECCcC
Q 000981 999 SAGEYAE-YTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLRS-TPGKVSILSDGSVVVEVGGIE 1076 (1202)
Q Consensus 999 ~~g~~~~-~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~~-~~a~V~i~~DGsV~V~~g~~e 1076 (1202)
.+..+. .++.+++++++++++|.++.....+-+..+ ..+|++++.+.+.....+ ..+.|++++||++.|.+|..+
T Consensus 388 -~~~~~~~~~~~~~~~~~ak~~~~~~~~~k~~~~re~~--~~~G~g~a~~~~~~~~~~~~~a~v~~~~~g~v~v~~g~~~ 464 (731)
T COG1529 388 -LGRRYDSGDYLEELDEAAKRFGWSERPVKPIWTREGD--LRRGVGRAMYTEPSGAGPGEGARVRLEADGTVTVRTGATD 464 (731)
T ss_pred -CcccccCccHHHHHHHHHHhcCcccccCChhhhhcCC--eeeeeEEEEEEEeccCCCCCcEEEEEcCCCcEEEEECCcc
Confidence 122222 389999999999999987544333333322 345777766666666555 679999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000981 1077 MGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQ 1156 (1202)
Q Consensus 1077 ~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~~~l~~~a~~~~ 1156 (1202)
+|||+.|.++|++|+.||| |.++|+|..+||+..+.+++|+|||++.+.++|+++||++|++|+...++.++
T Consensus 465 ~G~G~~t~~~q~~ae~lgi--------p~~~V~v~~gDt~~~~~~~~s~GS~~~~~~~~A~~~a~~~l~~k~~~~aa~~l 536 (731)
T COG1529 465 IGQGTDTVLAQIAAEELGI--------PPDDVEVVHGDTDVPVGGWGSVGSRGTAVAGSAVIDAAAKLAEKDPVAAARML 536 (731)
T ss_pred CCCcHHHHHHHHHHHHhCC--------CHHHEEEEecCCCCCCCCCCCcCcccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999988887766
Q ss_pred CCC-------------C------CCCHHHHHHHHHhCCCceEEEEeeecC----cccccceeee
Q 000981 1157 GQM-------------G------NVEWETLIQQVHICSSEALSTEFILFN----FVCQRTCTDY 1197 (1202)
Q Consensus 1157 ~~~-------------~------~~~~~elv~~a~~~~v~l~a~~~~~~~----~~~~~~~~~~ 1197 (1202)
+.+ + ..+|.+++..+ ..-.+....+|.+. |.++-.++++
T Consensus 537 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~A~~~EV~V 598 (731)
T COG1529 537 GADAEDVVLEDGAFKVGGGDRRSAVSLKEVAGKG--LAPGLAVAASFGSDNTYPYGAHIAEVEV 598 (731)
T ss_pred CCChhHeeeccCeeeeccCCccceeeHHHhhhcc--ccCcccccccccccccccceeEEEEEEE
Confidence 311 1 14677777765 33455666677653 6776665554
No 17
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=100.00 E-value=7.7e-79 Score=748.12 Aligned_cols=417 Identities=32% Similarity=0.402 Sum_probs=341.5
Q ss_pred cCCCCCcccccccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEc
Q 000981 754 PKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITR 833 (1202)
Q Consensus 754 ~~~~Gdv~~af~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~ 833 (1202)
...+||++++|++|+++ ||++|++++|+|++|||++|+|+|+++|+|+||++||+|+.+|..||++||||++||+|+.+
T Consensus 17 ~~~~GDve~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~~tQ~p~~~r~~va~~lglp~~~V~V~~~ 95 (547)
T PF02738_consen 17 HIERGDVEAAFAEADHV-VEAEYRTPRQAHAPMEPHGAVAWWDEDGRLTVWSSTQWPFHVRRAVAEALGLPPEKVRVISP 95 (547)
T ss_dssp EEEESSHHHHHHHTSEE-EEEEEEE-BB----SS-SEEEEEEETTTEEEEEES-SSHHHHHHHHHHHHTS-GGGEEEEES
T ss_pred ccccCCHHHHHhhCCEE-EEEEEEECCccccCCCCCeEEEEEccCCCEEEEECCcCHhHHHHHHhhhhcCChhHEEEeee
Confidence 47899999999999996 99999999999999999999999996779999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccHHHHHHHHHHHhcCCCEEEEeChHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCC
Q 000981 834 RVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPD 913 (1202)
Q Consensus 834 ~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl~~tR~edm~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~ 913 (1202)
++|||||.|. .....++.||++|+++||||||+|||+|+|+++.+||++.+++|+|+++||+|+|++++++.|+|+|.+
T Consensus 96 ~~GGgFG~~~-~~~~~~~~aa~~a~~~grPVk~~~tR~e~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Ga~~~ 174 (547)
T PF02738_consen 96 YVGGGFGKKK-QDSPIAVLAALAAKKTGRPVKLVWTREEDFRAGPKRPPTRIRVRAGADKDGKITALDHDIYADGGAYAS 174 (547)
T ss_dssp B-S--TTTTS-STHHHHHHHHHHHHHHSSEEEEE--HHHHHHHS-BB-EEEEEEEEEE-TTS-EEEEEEEEEEEEESS-T
T ss_pred ecCCCCCCcc-ccchHHHHHHHHHhccCceEEEEechHHhcCCCCCccHHHhhhhheECCCCCEEEeeeeeeccCCcccc
Confidence 9999999333 356778999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc-chhhhccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCc
Q 000981 914 VSP-IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSL 992 (1202)
Q Consensus 914 ~s~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~~~~ 992 (1202)
++. ++...+.+..++|+|||++++++.|+||++|.+||||||.+|+.|++|++||++|++|||||+|||++|+.+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~Tn~~~~g~~Rg~G~~q~~fa~E~~~DelA~~lg~DP~e~R~~N~~~~~~~ 254 (547)
T PF02738_consen 175 FSPAVAPRAGAGADGPYRIPNVRIDARAVYTNTPPAGAFRGFGAPQAAFALESFMDELAEKLGMDPLEFRLKNLIDPGDR 254 (547)
T ss_dssp THHHHHHHHHHTTTTTB--SEEEEEEEEEE-SSSSBE-STTTTHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHB-GTTEB
T ss_pred ccccchhhhhcccCCCcccccEEEEEEeccCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCcChHHHHHhcccccccc
Confidence 876 4455566678999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred ccccccCCCccccC-CHHH-HHHHHHHhCCchhHHHHHHHHhhcCCcceeeeEeeeeeeccccc-----ccceEEEEeeC
Q 000981 993 NLFYESSAGEYAEY-TLPL-IWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSD 1065 (1202)
Q Consensus 993 ~~~~~~~~g~~~~~-~~~~-~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~i~~D 1065 (1202)
++.|...+. ++.+ ||+++++.++|.++.++.+.++..+.|++||+|+++..++.+.. ...+.|+|++|
T Consensus 255 -----~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gig~~~~~~~~~~~~~~~~~~~a~v~l~~D 329 (547)
T PF02738_consen 255 -----TPTGQPYDSGDYPEDCLEKAAEHSGWRRRQKEVREFGSGNGWRGRGIGLGCAMYGSGTGGGSGDQSSARVRLNPD 329 (547)
T ss_dssp ------TTS-BETS--HHHHHHHHHHHHHCHHHHHHHHHHCCHEESSEEEEEEEEEEEEEESTTSGGGSEEEEEEEE-TT
T ss_pred -----cccCcccccCcHHHHHHHHHHhhhchhhhhhHHhhccccccccccccCCCccccccccccccccCCcEEEEEEeC
Confidence 344555443 7777 99999999999999988888888888999999999877776544 35799999999
Q ss_pred CcEEEEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCccccCCccCccchHHHHHHHHHHHHHHHHH
Q 000981 1066 GSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILV 1145 (1202)
Q Consensus 1066 GsV~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~l~ 1145 (1202)
|+|+|.+|..|||||++|+++||+||+||+ |+++|+|..+||+.+|++++|+|||++.+.|.|+++||++||
T Consensus 330 G~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi--------~~~~V~v~~~dT~~~p~~~~t~gSr~t~~~g~Av~~Aa~~lr 401 (547)
T PF02738_consen 330 GSVTVYTGGVEMGQGSRTALAQIAAEELGI--------PPEDVRVVSGDTDTTPYDGGTGGSRSTYMSGNAVRKAAEDLR 401 (547)
T ss_dssp S-EEEEES--BSSSSHHHHHHHHHHHHHTS---------GGGEEEEECBTTTS-SB--S-TTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecccCCcchhhhHHHHHHHHhCC--------ChhhEEEEeCCCcCCCCCCCCccchhhHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC-CCCCHHHH--HHHHHhCCCceEEEEeee
Q 000981 1146 ERLTLLRERLQGQM-GNVEWETL--IQQVHICSSEALSTEFIL 1185 (1202)
Q Consensus 1146 ~~l~~~a~~~~~~~-~~~~~~el--v~~a~~~~v~l~a~~~~~ 1185 (1202)
+||+++|+++++.+ ..+.|++- ...++...+.+.+..++.
T Consensus 402 ~~l~~~Aa~~~~~~~~~l~~~~g~~~~~~~~~~i~~~~~~~~~ 444 (547)
T PF02738_consen 402 EKLLEIAAEILGVDPEDLELEDGRVISPAKGVSISEAAIAAYA 444 (547)
T ss_dssp HHHHHHHHHHTTSSGGGEECHCHETHHHHHHEEHHHEEEHHHC
T ss_pred HHHHHHHHHhcccccchhhhhhhcccccccccccccccccccc
Confidence 99999999998633 34666665 555555555555555544
No 18
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=100.00 E-value=2e-54 Score=429.99 Aligned_cols=147 Identities=38% Similarity=0.669 Sum_probs=139.1
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceE
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLI 93 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i 93 (1202)
|+|+|||++++++ ++|+++|+||||+++||||+|.||++|+||||||+| |+++|+||++|+.+++|++|
T Consensus 2 i~~~vNG~~~~~~-~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv----------dg~~v~SCl~~~~~~~G~~V 70 (148)
T TIGR03193 2 LRLTVNGRWREDA-VADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV----------DGRPRLACSTLAHRVAGRKV 70 (148)
T ss_pred EEEEECCEEEEee-cCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE----------CCeEeeccHhhHhhcCCCcE
Confidence 7899999999996 899999999999999999999999999999999999 79999999999999999999
Q ss_pred EEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCC
Q 000981 94 TTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGY 173 (1202)
Q Consensus 94 ~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRCtgy 173 (1202)
+|||||++ .+.+||||+||+++|++|||||||||||++++||+ ++|+|+ ++||+++|+|||||||||
T Consensus 71 ~TiEgl~~-~~~l~pvq~af~~~~a~QCGfCtPG~vms~~~ll~-----~~p~ps-------~~ei~~al~GnLCRCTGY 137 (148)
T TIGR03193 71 ETVEGLAT-NGRLSRLQQAFHERLGTQCGFCTPGMIMAAEALLR-----RNPSPS-------RDEIRAALAGNLCRCTGY 137 (148)
T ss_pred EEeCCCCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHH-----cCCCCC-------HHHHHHHHcCCccCCCCC
Confidence 99999985 56899999999999999999999999999999994 357664 999999999999999999
Q ss_pred hhHHHHHHHhh
Q 000981 174 RPIADACKSFA 184 (1202)
Q Consensus 174 ~~i~~a~~~~~ 184 (1202)
++|++|++.++
T Consensus 138 ~~I~~Av~~aa 148 (148)
T TIGR03193 138 VKIIESVEAAA 148 (148)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 19
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=100.00 E-value=5.5e-54 Score=430.98 Aligned_cols=153 Identities=41% Similarity=0.709 Sum_probs=140.0
Q ss_pred CCCcccEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccc
Q 000981 7 HGGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (1202)
Q Consensus 7 ~~~~~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 86 (1202)
|+.. +.|+|+|||++++++ ++|+++|+||||+. ||||||.||++|+||||||+| |+++||||++|+.
T Consensus 3 ~~~~-~~i~~~vNG~~~~~~-~~~~~~Ll~~LR~~-gltgtK~GC~~G~CGACtVlv----------dg~~v~SCl~~a~ 69 (159)
T PRK09908 3 HSET-ITIECTINGMPFQLH-AAPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLV----------DGTAIDSCLYLAA 69 (159)
T ss_pred CCCc-eeEEEEECCEEEEEe-cCCCCcHHHHHHHc-CCCCCCCCcCCCCCCCcEEEE----------CCcEeehhHhhHH
Confidence 4433 579999999999996 89999999999985 999999999999999999999 7999999999999
Q ss_pred cccCceEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCC
Q 000981 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGN 166 (1202)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gn 166 (1202)
+++|++|+|||||++ ++.+||||+||+++|++|||||||||||++++||++ +|.|+ +|++||+++|+||
T Consensus 70 ~~~G~~V~TiEGl~~-~~~l~pvQ~Af~~~~a~QCGyCtPG~ims~~aLl~~-----~~~~~-----~s~~eI~~al~GN 138 (159)
T PRK09908 70 WAEGKEIRTLEGEAK-GGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAK-----PREKP-----LTITEIRRGLAGN 138 (159)
T ss_pred HhCCCEEEeecCCCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCCC-----CCHHHHHHHHcCC
Confidence 999999999999986 568999999999999999999999999999999954 34211 3699999999999
Q ss_pred ccccCCChhHHHHHHHh
Q 000981 167 LCRCTGYRPIADACKSF 183 (1202)
Q Consensus 167 lCRCtgy~~i~~a~~~~ 183 (1202)
|||||||++|++|++.+
T Consensus 139 lCRCTGY~~I~~Av~~~ 155 (159)
T PRK09908 139 LCRCTGYQMIVNTVLDC 155 (159)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 99999999999999875
No 20
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=100.00 E-value=1.2e-52 Score=474.83 Aligned_cols=273 Identities=23% Similarity=0.304 Sum_probs=249.9
Q ss_pred eEEecCCHHHHHHHHhhccCCCCCceeEEccCccceE-eeec-ccCCeeeeCCCcccccceeec-CCcEEEcccCcHHHH
Q 000981 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRD-QTGIEIGATVTISKA 318 (1202)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv-~k~~-~~~~~lIdl~~I~EL~~I~~~-~~~l~IGA~vTl~~l 318 (1202)
+|++|+|++|++++|++ ++++++|+||||+++ ++.+ ..|+.+|||++|+||+.|+.. +++|+|||+||++++
T Consensus 6 ~~~~P~sl~Ea~~ll~~-----~~~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLAD-----NPQAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHh-----CCCCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHH
Confidence 79999999999999994 578999999999988 4443 578999999999999999965 467999999999999
Q ss_pred HHH--HHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEE
Q 000981 319 IEA--LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKL 396 (1202)
Q Consensus 319 ~~~--l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~v 396 (1202)
+++ +++ .+|.|.+++++||++||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|++
T Consensus 81 ~~~~~i~~-----------~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p~---sD~~~~Llal~A~v~i~~~~g~R~v 146 (291)
T PRK09971 81 IEDPIIQK-----------HLPALAEAAVSIGGPQIRNVATIGGNICNGATS---ADSAPPLFALDAKLEIHSPNGVRFV 146 (291)
T ss_pred hcChHHHH-----------HhHHHHHHHHHhCCHHHhcceecccccccCCcc---hhHHHHHHHcCCEEEEEcCCCcEEE
Confidence 873 333 489999999999999999999999999999999 9999999999999999999999999
Q ss_pred ehhhhhc---CCCCCCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCcee
Q 000981 397 MLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 473 (1202)
Q Consensus 397 pl~dF~~---~~~l~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i 473 (1202)
|++|||. ++.|+++|||++|+||.++.. +..+.+||+++| +++|||+||+|+.++++ +++|
T Consensus 147 p~~df~~g~~~t~l~~~Eil~~I~iP~~~~~---------~~~~~~~K~~~R-~~~~~a~v~~a~~~~~~------~g~i 210 (291)
T PRK09971 147 PINGFYTGPGKVSLEHDEILVAFIIPPEPYE---------HAGGAYIKYAMR-DAMDIATIGCAVLCRLD------NGNF 210 (291)
T ss_pred EHHHhcCCccccccCCCceEEEEEeCCCCCC---------CCceEEEEEccc-chhhHhHheeEEEEEEc------CCEE
Confidence 9999997 689999999999999975431 356678999999 79999999999999985 3689
Q ss_pred eeeEEEEeccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CcHHHHhHhHHHHHHHHHHHHhhhc
Q 000981 474 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 550 (1202)
Q Consensus 474 ~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~-~s~~YR~~la~~L~~k~l~~~~~~~ 550 (1202)
+++||+|||++++ |+|+.++|++|.|+.|++++++++.+.+.+++.|.+|. +|++||++|+.+|++|++.++..+.
T Consensus 211 ~~~ria~G~v~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~~~s~~YR~~l~~~l~~r~l~~~~~~~ 287 (291)
T PRK09971 211 EDLRLAFGVAAPT-PIRCQHAEQTAKGAPLNLETLEAIGELVLQDVAPRSSWRASKEFRLHLIQELTKRVIKEAVAAA 287 (291)
T ss_pred EEEEEEEEcccCc-eeeHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999999999999987 8999999999999999999987653
No 21
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=100.00 E-value=6.6e-53 Score=417.27 Aligned_cols=152 Identities=45% Similarity=0.812 Sum_probs=143.9
Q ss_pred ccEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccC
Q 000981 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 90 (1202)
Q Consensus 11 ~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 90 (1202)
.++|+|+|||++++++ ++|+++|+|+||++++|||||.||+.|.||||||+| ||++|+||++|+++++|
T Consensus 1 ~~~i~ltvNG~~~~~~-~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv----------DG~~v~SCl~~a~~~~G 69 (156)
T COG2080 1 KMPITLTVNGEPVELD-VDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV----------DGEAVNSCLTLAVQAEG 69 (156)
T ss_pred CCcEEEEECCeEEEEE-eCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE----------CCeEehHHHHHHHHhCC
Confidence 3689999999999997 899999999999999999999999999999999999 89999999999999999
Q ss_pred ceEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCcccc
Q 000981 91 CLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRC 170 (1202)
Q Consensus 91 ~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRC 170 (1202)
++|+|||||+..+..|||+|+||++++++|||||||||||++++||++ +|.| |++||+++|+||||||
T Consensus 70 ~~ItTiEGl~~~~~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~lL~~-----~~~p-------s~~eI~~~lsGnlCRC 137 (156)
T COG2080 70 AEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATALLDR-----NPAP-------TDEEIREALSGNLCRC 137 (156)
T ss_pred CeEEEeecccCCCCCcCHHHHHHHHcCCCcCCCCcHHHHHHHHHHHHh-----CCCC-------CHHHHHHHHhcCcccc
Confidence 999999999965677999999999999999999999999999999954 5666 4999999999999999
Q ss_pred CCChhHHHHHHHhhh
Q 000981 171 TGYRPIADACKSFAA 185 (1202)
Q Consensus 171 tgy~~i~~a~~~~~~ 185 (1202)
|||..|++|++.++.
T Consensus 138 t~Y~~I~~Ai~~aa~ 152 (156)
T COG2080 138 TGYQNIVAAILDAAE 152 (156)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 22
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=100.00 E-value=1.2e-52 Score=421.25 Aligned_cols=148 Identities=36% Similarity=0.731 Sum_probs=139.8
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCc
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 91 (1202)
..|+|+|||++++++ ++|+++|++|||++++|||||.||++|+||||||+| |+++|+||++|+.+++|+
T Consensus 2 ~~i~f~vNG~~~~~~-~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv----------dG~~v~SCl~~~~~~~G~ 70 (151)
T TIGR03198 2 EQFRFTVNGQAWEVA-AVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI----------DGKLANACLTMAYQADGH 70 (151)
T ss_pred ccEEEEECCEEEEee-cCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE----------CCcEEechHHHHHHhcCC
Confidence 358999999999997 799999999999999999999999999999999999 789999999999999999
Q ss_pred eEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccC
Q 000981 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCT 171 (1202)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRCt 171 (1202)
+|+|||||+. +.+||||+||+++|++|||||||||||++++||++ +|.|+ ++||+++|+|||||||
T Consensus 71 ~v~TiEgl~~--~~l~pvQ~af~~~~a~QCGfCtpG~im~~~~ll~~-----~p~p~-------~~ei~~al~gnlCRCt 136 (151)
T TIGR03198 71 EITTIEGIAE--NELDPCQTAFLEEGGFQCGYCTPGMVVALKALFRE-----TPQPS-------DEDMEEGLSGNLCRCT 136 (151)
T ss_pred EEEecCCcCC--CCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCCC-------HHHHHHHHcCCCcCCC
Confidence 9999999973 57999999999999999999999999999999953 56664 9999999999999999
Q ss_pred CChhHHHHHHHhh
Q 000981 172 GYRPIADACKSFA 184 (1202)
Q Consensus 172 gy~~i~~a~~~~~ 184 (1202)
||++|++|++.++
T Consensus 137 gY~~I~~Av~~~~ 149 (151)
T TIGR03198 137 GYGGIIRSACRIR 149 (151)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999876
No 23
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=100.00 E-value=6.6e-51 Score=427.55 Aligned_cols=161 Identities=37% Similarity=0.684 Sum_probs=143.2
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCc
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGC 91 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 91 (1202)
.+|+|+|||++++++ ++|+++|+++||++++|||+|.||++|.||||||+| ||+++||||+|+++++|+
T Consensus 50 ~~i~~~VNG~~~~~~-v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVlV----------dG~~v~SCl~la~~~~G~ 118 (217)
T PRK11433 50 SPVTLKVNGKTEQLE-VDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLV----------NGRRLNACLTLAVMHQGA 118 (217)
T ss_pred ceEEEEECCEEEEEe-cCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEEE----------CCEEeeeeeeehhhcCCC
Confidence 569999999999996 899999999999999999999999999999999999 799999999999999999
Q ss_pred eEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCC----CCCCCCCCHHHHHHHHhCCc
Q 000981 92 LITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEP----PPGLSKLTISEAEKAIAGNL 167 (1202)
Q Consensus 92 ~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~----~~~~~~~t~~~i~~~l~gnl 167 (1202)
+|+|||||++ .+.+||+|+||+++|++|||||||||||++++||+++++.. |.. ....+.||++||+++|+|||
T Consensus 119 ~ItTiEGL~~-~~~lhpvQ~Af~~~~a~QCGyCTPG~imsa~alL~~~~~~~-~~~~~~~~~~~p~pt~~eIrealsGNl 196 (217)
T PRK11433 119 EITTIEGLGS-PDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDGI-PSHVTVDLTAAPELTADEIRERMSGNI 196 (217)
T ss_pred EEEEeCCcCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHhccccC-ccccccccccCCCCCHHHHHHHHcCCc
Confidence 9999999986 56899999999999999999999999999999997643210 000 00012357999999999999
Q ss_pred cccCCChhHHHHHHHhhh
Q 000981 168 CRCTGYRPIADACKSFAA 185 (1202)
Q Consensus 168 CRCtgy~~i~~a~~~~~~ 185 (1202)
||||||++|++|+++++.
T Consensus 197 CRCtgY~~Iv~Av~~~a~ 214 (217)
T PRK11433 197 CRCGAYSNILEAIEDVAG 214 (217)
T ss_pred cCCCCcHHHHHHHHHHHh
Confidence 999999999999999874
No 24
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=100.00 E-value=1e-49 Score=445.45 Aligned_cols=258 Identities=21% Similarity=0.212 Sum_probs=233.9
Q ss_pred cCCHHHHHHHHhhccCCCCCceeEEccCccceE-eeec--ccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHH
Q 000981 246 PISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV--EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEAL 322 (1202)
Q Consensus 246 P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv-~k~~--~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l 322 (1202)
|+||+||+++|++ ++++++++|||++++ ++.. ..|+.+|||++|+||+.|+.++++|+|||+||+++|+++
T Consensus 1 P~sl~ea~~ll~~-----~~~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~- 74 (264)
T TIGR03199 1 PAALDEAWSLLEK-----APDSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKN- 74 (264)
T ss_pred CCCHHHHHHHHHh-----CCCCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhC-
Confidence 8999999999994 578999999999988 3433 458999999999999999999999999999999999864
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhhhh
Q 000981 323 KEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFL 402 (1202)
Q Consensus 323 ~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF~ 402 (1202)
.. ..+.+|.|+++++.|||+||||+||+|||||++ . ||++|+|+||||+|+|.+ .|+|+||++|||
T Consensus 75 -~~-------i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~--~---sD~~p~Llal~A~v~i~~-~g~r~vp~~~f~ 140 (264)
T TIGR03199 75 -PL-------IKRALPCFVDAASAIAAPGVRNRATIGGNIASG--I---GDFIPALLVLGAELIVYQ-KELIRLPLGAWL 140 (264)
T ss_pred -hH-------hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc--c---cchHHHHHHcCCEEEEEe-CCEEEEEHHHhh
Confidence 00 123499999999999999999999999999998 4 899999999999999999 899999999999
Q ss_pred cCCCCCCCceEEEEEc-CCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEe
Q 000981 403 ERPPLDSRSILLSVEI-PCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFG 481 (1202)
Q Consensus 403 ~~~~l~~~eii~~I~i-P~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~G 481 (1202)
+.+.|.++|||++|.| |.+.. +..+.+||+++| .++++++||+|+.+.+++ +++|+++||+||
T Consensus 141 ~~~~l~~~Eii~~I~i~p~~~~----------~~~~~~~k~~~R-~~~~~a~v~~a~~~~~~~-----~~~i~~~ria~G 204 (264)
T TIGR03199 141 SEEDFKPTAIVTRVIIGPRAET----------GEFVFYHKVGRR-ETFTGSLVVVAGRFLLDG-----SQTIKEIRLAVG 204 (264)
T ss_pred hccCCCCCcEEEEEEEECCCCC----------CCcEEEEEEecc-chhHHHHheeeEEEEEcC-----CCeEEEEEEEee
Confidence 9889999999999999 65533 456778999999 789999999999999863 368999999999
Q ss_pred ccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CcHHHHhHhHHHHHH
Q 000981 482 AFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLY 540 (1202)
Q Consensus 482 gv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~-~s~~YR~~la~~L~~ 540 (1202)
|++++ |+|+.++|++|.||+|++++++++.+.+.+++.|.+|. +|++||++|+.+|+.
T Consensus 205 gv~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~~~s~~YR~~l~~~~~~ 263 (264)
T TIGR03199 205 GADIT-PRRLLDSEAKLMAPPWDPHLLAELYKTIIQELPFSSDPFATAAYRKKVAANVIV 263 (264)
T ss_pred cCCCc-eeeHHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999 99999999999999999999999999999999999987 899999999999874
No 25
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=2.2e-49 Score=448.09 Aligned_cols=272 Identities=21% Similarity=0.275 Sum_probs=240.5
Q ss_pred CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceE-eee-cccCCeeeeCCCcccccceeecCCcEEEcccCcHHH
Q 000981 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (1202)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (1202)
.|+|++|+|++||+++|++ ++++++++|||||++ ++. ...|+.+|||++||||+.|+.++++|+|||+||+++
T Consensus 4 ~f~~~~P~sl~eA~~ll~~-----~~~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAA-----HPAARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred CceEECCCCHHHHHHHHhh-----CCCCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHH
Confidence 4789999999999999994 578999999999988 443 367899999999999999999999999999999999
Q ss_pred HHHH--HHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC----------------------------
Q 000981 318 AIEA--LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR---------------------------- 367 (1202)
Q Consensus 318 l~~~--l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p---------------------------- 367 (1202)
|+++ +++ .+|.|.++++.|||+||||+||||||||+++|
T Consensus 79 l~~~~~i~~-----------~~p~L~~a~~~ias~qIRN~aTiGGNi~~~~~c~~~~~~~~~~~~~~~c~~~~~~~c~~~ 147 (321)
T TIGR03195 79 LAEDALVRT-----------RWPALAQAARAVAGPTHRAAATLGGNLCLDTRCIYYNQSEWWRSGNGYCLKYRGDKCHVA 147 (321)
T ss_pred HhhChhhHh-----------HhHHHHHHHHHhCCHHHhCceecHHhhhccCCCcccccccccccccccccccCCcccccc
Confidence 9885 222 48999999999999999999999999996543
Q ss_pred -------CCCCCchHHHHHhcCcEEEEEeCCceEEEehhhhhc-----CCCCCCCceEEEEEcCCCCccCCccccCCcce
Q 000981 368 -------KHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE-----RPPLDSRSILLSVEIPCWDLTRNVTSETNSVL 435 (1202)
Q Consensus 368 -------~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF~~-----~~~l~~~eii~~I~iP~~~~~~~~~~~~~~~~ 435 (1202)
.+++||++|+|+||||+|+|.+..|+|+||++|||. ++.|+++|||++|+||... ..
T Consensus 148 ~~~~~c~a~p~sD~~~~LlAldA~v~i~~~~g~R~vpl~dF~~~~g~~~t~L~~~Eiit~I~iP~~~-----------~~ 216 (321)
T TIGR03195 148 PKSDRCYAAFSGDVAPALLVLDAEAEIVGPAGVRRVPLAELYVEDGAAHLTLEPGEVLAAVRVPPTG-----------GW 216 (321)
T ss_pred CCCccccCCCchHHHHHHHHcCCEEEEEeCCccEEEEHHHHhcccCCccccCCCCCeEEEEEecCCC-----------CC
Confidence 223489999999999999999999999999999997 4689999999999999642 23
Q ss_pred eeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEeccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000981 436 LFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLL 515 (1202)
Q Consensus 436 ~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l 515 (1202)
.+.++|+.+| ...||+++++|+.++.+ +++|+++||+|||++++ |+|++++ ++|.||.|+++++++|.+++
T Consensus 217 ~~~y~k~~~r-~a~~~~~~~vav~l~~~------~~~i~~~ria~Ggva~~-p~r~~~~-e~l~G~~~~~~~~~~a~~~~ 287 (321)
T TIGR03195 217 TSAYSKVRVR-GAIDFPLAGVAVALQRD------GDRIAGLRVALTGTNSR-PLMVPGT-DALAGRPLDDAAAEEIARLV 287 (321)
T ss_pred ccEEEEEecC-ccccceeEEEEEEEEeC------CCeEEEEEEEEECccCc-eeehHHH-HHhcCCCCCHHHHHHHHHHH
Confidence 4455677666 68899999998888775 36899999999999999 9999999 55899999999999999999
Q ss_pred hhcCCCCCCC-CcHHHHhHhHHHHHHHHHHHHh
Q 000981 516 RDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLT 547 (1202)
Q Consensus 516 ~~ei~p~~~~-~s~~YR~~la~~L~~k~l~~~~ 547 (1202)
.+++.|.++. +|++||+.|+.+|++|++.+++
T Consensus 288 ~~~~~p~~d~~~s~~YRr~l~~~l~~r~~~~~~ 320 (321)
T TIGR03195 288 RKTSQPMRTTLMGVKYRRRVLLAIARRLVDQLW 320 (321)
T ss_pred HhhCCCccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999886 8999999999999999998765
No 26
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=100.00 E-value=1.1e-46 Score=415.76 Aligned_cols=271 Identities=26% Similarity=0.310 Sum_probs=243.2
Q ss_pred CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceE-eeec-ccCCeeeeCCCcccccceeecCCc-EEEcccCcHH
Q 000981 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTG-IEIGATVTIS 316 (1202)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~-l~IGA~vTl~ 316 (1202)
.|+|++|+|++||+.+++. .+++++++|||+|.. +|.. ..|..+|||++|++++.+...+++ |+|||+||++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~-----~~~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLAR-----APDAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHHh-----CCCcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 3789999999999999993 569999999999988 5654 689999999999988887777555 9999999999
Q ss_pred HHHHH--HHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceE
Q 000981 317 KAIEA--LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCE 394 (1202)
Q Consensus 317 ~l~~~--l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R 394 (1202)
+|.++ ++. .+|.|++++..+||+||||+||||||||+++|. +|++|+|+||||+|++.+..|+|
T Consensus 78 ei~~~~~~~~-----------~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p~---aD~~~aLlaLdA~v~~~~~~g~r 143 (284)
T COG1319 78 EIARHPAVRR-----------IPPALSEAASAIASPQVRNRATIGGNLCNADPA---ADLAPALLALDAEVEIRSPGGER 143 (284)
T ss_pred HHHhChhhhh-----------hchHHHHHHHHhcChhhcceeeecchhccCCCc---hhhHHHHHHcCCEEEEecCCccE
Confidence 99975 333 499999999999999999999999999999998 99999999999999999999999
Q ss_pred EEehhhhhc---CCCCCCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCc
Q 000981 395 KLMLEEFLE---RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGI 471 (1202)
Q Consensus 395 ~vpl~dF~~---~~~l~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~ 471 (1202)
++|++|||+ .|.|+++|||++|.||.++. ..+.+||+.+|+...+++.|.+|..+.. +
T Consensus 144 ~i~~~~f~~~p~~t~l~~gelit~v~lP~~~~-----------~~~~~~kk~r~r~~~~~~~vsvA~~~~~--------~ 204 (284)
T COG1319 144 TIPIEDFFRGPGETALEPGELITAVILPPPPA-----------ARGAYYKKVRRRASFAIALVSVAAKLRG--------D 204 (284)
T ss_pred EEEHHHhhcCccccccCCCcEEEEEEcCCCcc-----------CCccEEEEeecchhhhHHHHHHHhhhcc--------c
Confidence 999999998 67999999999999999732 3345566666657778888888876654 2
Q ss_pred eeeeeEEEEeccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CcHHHHhHhHHHHHHHHHHHHhhh
Q 000981 472 RVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (1202)
Q Consensus 472 ~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~-~s~~YR~~la~~L~~k~l~~~~~~ 549 (1202)
+|+++||++||++++ |+|+.++|+.|.|+++++++++.+.+.+.+++.|.+|. +|.+||++|+.+++.|.+.++..+
T Consensus 205 ~v~~~RvAlgg~a~~-p~R~~~~E~~L~~~~l~~~~~~~~~~~~~~~~~p~~d~r~s~~yr~~l~~~~~~ral~~a~~~ 282 (284)
T COG1319 205 RVSEARVALGGVAPK-PWRLEDAEAALLGKPLSLETLEAAAEAAMQEAAPISDVRGSAEYRRKLAKVLLARALAEAQGR 282 (284)
T ss_pred ceeeeeeeecccCCc-ceehHHHHHHhhCCCCChHHHHHHHHHhhcccCCcccccchHHHHHHHHHHHHHHHHHHhhhc
Confidence 899999999999999 99999999999999999999999999999999999987 899999999999999999998765
No 27
>PRK09799 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-45 Score=409.40 Aligned_cols=250 Identities=21% Similarity=0.281 Sum_probs=219.9
Q ss_pred eEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHH
Q 000981 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (1202)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (1202)
+|++|+|++|++++|+++ .+++++++|||+|++......|+.+|||++| ||++|+.++++|+|||+|||+++++.
T Consensus 4 ~y~~P~sl~Ea~~ll~~~----~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKRRY----QDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHHhC----CCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 799999999999999953 2469999999999873233568899999999 99999999999999999999999876
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhhh
Q 000981 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEF 401 (1202)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~dF 401 (1202)
. . ..+.|+++++.|||+||||+||||||||+++|. ||++|+|+||||+|+|.+. |++|++||
T Consensus 79 ~--~----------~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p~---sD~~p~LlAldA~v~l~~~---r~vpl~~f 140 (258)
T PRK09799 79 R--F----------IPAALREALGFVYSRHLRNQSTIGGEIAARQEE---SVLLPVLLALDAELVFGNG---ETLSIEDY 140 (258)
T ss_pred c--c----------cHHHHHHHHHHhCCHHHhccchhHHHhhcCCcc---HHHHHHHHHcCCEEEEecC---cEEeHHHh
Confidence 2 1 124899999999999999999999999999998 9999999999999999984 89999999
Q ss_pred hcCCCCCCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEe
Q 000981 402 LERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFG 481 (1202)
Q Consensus 402 ~~~~~l~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~G 481 (1202)
|.. .++|||++|.||.+. ..+.+||++ | +.+|+|+||+|+.++++. .+||+||
T Consensus 141 ~~g---~~~Eil~~I~iP~~~------------~~~~~~K~~-r-~~~~~a~v~~A~~~~~~~----------~~ria~G 193 (258)
T PRK09799 141 LAC---PCDRLLTEIIIPDPY------------RTCATRKIS-R-SQAGLTVVTAAVALTDHD----------GMRIALD 193 (258)
T ss_pred cCC---CCCcEEEEEEcCCCC------------CcceEEEec-c-cccChhhheeEEEEEEcC----------CeEEEEE
Confidence 975 479999999999643 234568886 6 578999999999998852 4899999
Q ss_pred ccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CcHHHHhHhHHHHHHHHHHHHhhh
Q 000981 482 AFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (1202)
Q Consensus 482 gv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~-~s~~YR~~la~~L~~k~l~~~~~~ 549 (1202)
|++++ |+|++++|+ |+|+++++.++ +.+++.|.+|. +|++||++|+.+|++|+|.++.+.
T Consensus 194 gv~~~-p~r~~~~E~----~~~~~~~~~~a---~~~~~~p~~d~~~s~~YR~~~~~~l~~r~l~~~~~~ 254 (258)
T PRK09799 194 GVASK-PLRLHDVEK----QNLEGNALEQA---VANAIFPQEDLRGSVAYKRYIAGVLVADLYADCQQA 254 (258)
T ss_pred CCCCc-ccchHHHhc----CCCCHHHHHHH---HHhcCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999998 88999988876 45888998887 899999999999999999997764
No 28
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=100.00 E-value=1.5e-44 Score=400.38 Aligned_cols=251 Identities=21% Similarity=0.274 Sum_probs=218.5
Q ss_pred ceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHH
Q 000981 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (1202)
.+|++|+|++|++++|+++ .++++++||||||.+......++.+|||++| ||+.|+.++++|+|||+||+++|++
T Consensus 2 ~~y~~P~sl~Ea~~ll~~~----~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 2 EQFFRPESTIQALELKKRH----TGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred CceECCCCHHHHHHHHHhC----CCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 3799999999999999952 2479999999999874333567899999999 9999999999999999999999987
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEehhh
Q 000981 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEE 400 (1202)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vpl~d 400 (1202)
+. . ..+.|.++++.||++||||+||||||||+++|. +|++|+|+||||+|+|.+. |++|++|
T Consensus 77 ~~--~----------~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~p~---~D~~~~LlaldA~v~l~~~---r~vp~~d 138 (257)
T TIGR03312 77 NE--L----------TPAALKEALGFVYSRHIRNQATIGGEIAAFQSE---SLLLPVLLALKATVVLANA---SQMDIED 138 (257)
T ss_pred Cc--c----------hHHHHHHHHHHhCCHHHhccccHHHHhhcCCCc---hHHHHHHHHcCCEEEEecC---cEEeHHH
Confidence 52 1 123799999999999999999999999999999 8999999999999999976 8999999
Q ss_pred hhcCCCCCCCceEEEEEcCCCCccCCccccCCcceeeeEEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEE
Q 000981 401 FLERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 480 (1202)
Q Consensus 401 F~~~~~l~~~eii~~I~iP~~~~~~~~~~~~~~~~~~~~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~ 480 (1202)
||.. .++|||++|+||.+. ..+.++|+ .| +.+|+|+|++|+.++++. ++||+|
T Consensus 139 F~~g---~~~Ell~~V~iP~~~------------~~~~~~k~-~R-~~~~~a~v~~A~~~~~~~----------~~ria~ 191 (257)
T TIGR03312 139 YLAS---EQRELIVEVIIPNPN------------LMCATRNI-SR-SAAGLAVVTAAVAVDQKG----------NMRIAL 191 (257)
T ss_pred hcCC---CCCcEEEEEEcCCCC------------CCceEEEe-cC-cccchhhheeEEEEEecC----------CEEEEE
Confidence 9975 479999999999753 23566788 67 688999999999988752 489999
Q ss_pred eccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCC-CcHHHHhHhHHHHHHHHHHHHhhh
Q 000981 481 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 549 (1202)
Q Consensus 481 Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~ei~p~~~~-~s~~YR~~la~~L~~k~l~~~~~~ 549 (1202)
||++++ |+|+.++|+. .++++.++++ +.+++.|.+|. +|++|||+|+.+|++|++.++.+-
T Consensus 192 ggv~~~-p~r~~~~E~~----~~~~~~~~~~---~~~~~~p~~D~r~sa~YRr~~~~~l~~r~l~~~~~~ 253 (257)
T TIGR03312 192 DGVSPV-PVRLRDVEAQ----DLKGEALEQA---VADAIHPVADLCGSVAYKRYIAGVVVADLLAECQQL 253 (257)
T ss_pred EccCCc-eeehHHHhhC----cCCHHHHHHH---HHhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999985 6777877654 66889999997 899999999999999999998764
No 29
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=100.00 E-value=1.8e-36 Score=316.99 Aligned_cols=165 Identities=34% Similarity=0.463 Sum_probs=140.6
Q ss_pred CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEe-eec-ccCCeeeeCCCcccccceeecCCcEEEcccCcHHH
Q 000981 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYY-KEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (1202)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~-k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (1202)
.++|++|+|++||+++++ .++++++|||||+++++ +.+ ..|+.+|||++|+||+.|+.++++|+|||+||+++
T Consensus 2 ~~~~~~P~sl~ea~~ll~-----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA-----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH-----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh-----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 479999999999999999 47899999999999994 333 47999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCceEEEe
Q 000981 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLM 397 (1202)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~R~vp 397 (1202)
++++-. ..+.+|.|++++++||++||||+||||||||+++|. ||++|+|+|+||+|+|.+.+|+|++|
T Consensus 77 l~~~~~---------~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~~---sD~~~~Llal~A~v~i~~~~g~r~~~ 144 (171)
T PF00941_consen 77 LEESPL---------IQQYFPALAQAARRIASPQIRNRATIGGNLCNASPA---SDLAPALLALDARVEIASPDGTRTVP 144 (171)
T ss_dssp HHHHHH---------HHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBTT----SHHHHHHHTT-EEEEEETTEEEEEE
T ss_pred Hhhcch---------hhhhHHHHHHHHHHhCCHhHeeeeeeccccccCccc---ccHHHHHHHhCcEEEEEcCCeeEEEE
Confidence 999711 123599999999999999999999999999999998 99999999999999999999999999
Q ss_pred hhhhhc---CCCCCCCceEEEEEcCCC
Q 000981 398 LEEFLE---RPPLDSRSILLSVEIPCW 421 (1202)
Q Consensus 398 l~dF~~---~~~l~~~eii~~I~iP~~ 421 (1202)
++|||. ++.|+++|||++|+||.|
T Consensus 145 ~~~f~~g~~~~~l~~~eli~~I~iP~~ 171 (171)
T PF00941_consen 145 LEDFFTGPRKTDLEPGELITSIRIPKP 171 (171)
T ss_dssp GGGGEECTTEESS-TTEEEEEEEEES-
T ss_pred HHHhcCccccccCCCCcEEEEEECCCC
Confidence 999997 678999999999999975
No 30
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=99.96 E-value=1.4e-30 Score=231.44 Aligned_cols=75 Identities=52% Similarity=1.009 Sum_probs=61.7
Q ss_pred EeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHHhCCccccCCCh
Q 000981 95 TSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 174 (1202)
Q Consensus 95 TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~t~~~i~~~l~gnlCRCtgy~ 174 (1202)
|||||++ ++.|||||+||+++|++|||||||||||++++||++ +|.| |++||+++|+|||||||||+
T Consensus 1 TvEGl~~-~~~~~~iq~af~~~~a~QCGfCtpG~im~~~~ll~~-----~~~p-------~~~ei~~al~gnlCRCTgY~ 67 (75)
T PF01799_consen 1 TVEGLAS-DGELHPIQQAFVEHGAVQCGFCTPGMIMAAYALLRR-----NPDP-------TEEEIREALSGNLCRCTGYR 67 (75)
T ss_dssp -GGGSSB-TTB--HHHHHHHHTT--SSSSSHHHHHHHHHHHHHH-----SSS--------CHHHHHHHTTTS--SSSTSH
T ss_pred CcCcCCC-CCCcCHHHHHHHHhCCCcCCcchHHHHHHHHHHhhc-----ccch-------hhHHHHHHHHcCccCCCCcH
Confidence 8999975 789999999999999999999999999999999965 4666 49999999999999999999
Q ss_pred hHHHHHHH
Q 000981 175 PIADACKS 182 (1202)
Q Consensus 175 ~i~~a~~~ 182 (1202)
+|++|++.
T Consensus 68 ~I~~Av~~ 75 (75)
T PF01799_consen 68 PIVEAVRQ 75 (75)
T ss_dssp HHHHHHH-
T ss_pred HHHHHHhC
Confidence 99999973
No 31
>PF01315 Ald_Xan_dh_C: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro: IPR000674 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1N63_E 1N60_B 1ZXI_E 1N5W_E 1N62_B 1N61_E 3AN1_B 2E3T_A 1WYG_A 2W3R_D ....
Probab=99.95 E-value=2.9e-28 Score=236.53 Aligned_cols=107 Identities=43% Similarity=0.643 Sum_probs=89.0
Q ss_pred ccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCCCCCCCCCc-ccCCC--cccccCCc
Q 000981 618 SGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK-TIFGS--EPLFADEL 694 (1202)
Q Consensus 618 tG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~~g~n~~~~-~~~~~--~~~~a~~~ 694 (1202)
||+++|++|++ +|||||+++||||++||+|+|||+++|++||||++|+|++|+| +.|.... ....+ +|+|++++
T Consensus 1 TG~a~Y~~Di~-~~~~l~~~~vrS~~a~a~I~sid~~~A~~~pGV~~v~t~~Dip--~~~~~~~~~~~~~~~~~~la~~~ 77 (111)
T PF01315_consen 1 TGEARYVDDIP-PPGMLYAAFVRSPIAHARIKSIDTSEALAMPGVVAVITAEDIP--GINPNGGLPIPHDEPQPVLADDK 77 (111)
T ss_dssp TT-S-BGGGSC-STTTEEEEEEE-SSSSEEEEEEEGHHHHHSTTEEEEEEGGGHS--SGSEESCSCSTTSSEEESS-SSE
T ss_pred CcCeEcccccC-CCCCeEEEEEecCcCcEEEEEEecHHHccCCCEEEEEEecccC--ccccCccccccCCCceEeccCCe
Confidence 89999999998 7899999999999999999999999999999999999999999 4332111 12233 47999999
Q ss_pred eeecCCeEEEEEeCCHHHHHHhcccceEEEecCCC
Q 000981 695 TRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNL 729 (1202)
Q Consensus 695 V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l 729 (1202)
|+|+|||||+|||+|+++|++|+++|+|+| |+|
T Consensus 78 V~y~GqpVa~VvAet~~~A~~Aa~~V~V~Y--e~l 110 (111)
T PF01315_consen 78 VRYVGQPVALVVAETREAARDAAELVKVEY--EEL 110 (111)
T ss_dssp ESSTT-EEEEEEESSHHHHHHHHHT-EEEE--EE-
T ss_pred EeECCCeEEEEEECCHHHHHHHhcCcEEEe--EeC
Confidence 999999999999999999999999999999 766
No 32
>PF03450 CO_deh_flav_C: CO dehydrogenase flavoprotein C-terminal domain; InterPro: IPR005107 Proteins containing this domain form structural complexes with other known families, such as IPR008274 from INTERPRO and IPR001041 from INTERPRO]. The carbon monoxide (CO) dehydrogenase of Oligotropha carboxidovorans is a heterotrimeric complex composed of a apoflavoprotein, a molybdoprotein, and an iron-sulphur protein. It can be dissociated with sodium dodecylsulphate []. CO dehydrogenase catalyzes the oxidation of CO according to the following equation []: CO + H2O = CO2 + 2e + 2H+ Subunit S represents the iron-sulphur protein of CO dehydrogenase and is clearly divided into a C- and an N-terminal domain, each binding a [2Fe-2S] cluster [].; PDB: 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B 3UNI_A 3AMZ_A ....
Probab=99.70 E-value=9.8e-17 Score=154.29 Aligned_cols=101 Identities=27% Similarity=0.390 Sum_probs=94.0
Q ss_pred EEEecCCCCCCccceeeeeEEEEEcCCCCCCCceeeeeEEEEeccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 000981 439 TYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDS 518 (1202)
Q Consensus 439 ~~K~~~R~~~~d~a~v~~a~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e 518 (1202)
+||+.+| .++|+|++|+|+.+.+++ +++|+++||++||++++ |+|+.++|++|.|++|++++++++.+.+.++
T Consensus 2 ayk~~~R-~~~d~a~v~~a~~~~~~~-----~~~i~~~ria~g~v~~~-p~r~~~~E~~L~g~~~~~~~~~~~~~~~~~~ 74 (103)
T PF03450_consen 2 AYKIGRR-KANDIAIVNVAVLVSVDD-----DGRIEDARIAVGGVAPT-PVRAEEVEAALIGKPLSEETLEEAAEAVSEE 74 (103)
T ss_dssp EEEESSS-SSSSSSSEEEEEEEEEET-----TSEEEEEEEEEESSSSS-TEE-HHHHHHTTTSBSSHHHHHHHHHHHHHH
T ss_pred CeeccCc-cccHHHHHhhhheEEEec-----CceEEEEEEEEeccccc-eeehHHHHHHHhhcchhhhhHHHHHHHHHhc
Confidence 4699988 899999999999999985 35999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCC-CcHHHHhHhHHHHHHHHHHHH
Q 000981 519 VVPEDGT-SIPAYRSSLAVGFLYEFFGSL 546 (1202)
Q Consensus 519 i~p~~~~-~s~~YR~~la~~L~~k~l~~~ 546 (1202)
+.|.+|. +|++||++|+.+|++|+|.++
T Consensus 75 ~~~~~d~r~s~~YR~~l~~~l~~ral~~~ 103 (103)
T PF03450_consen 75 IDPISDMRASAEYRRHLARVLVRRALEEV 103 (103)
T ss_dssp THHCTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999986 899999999999999999874
No 33
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=99.67 E-value=4.6e-18 Score=214.66 Aligned_cols=432 Identities=15% Similarity=0.099 Sum_probs=273.4
Q ss_pred cccCCCCCCCC-CccccccccccCccceeccccCCCCCCceEEEEEecCCCCceeccCCCcccCCCCCeEEEEEcCCCCC
Q 000981 595 VQLSREYYPVG-EPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPE 673 (1202)
Q Consensus 595 ~~~~~~~~~iG-k~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~aha~I~sID~s~A~~~pGVv~vvt~~Dip~ 673 (1202)
++.+..+.++| ...++ |+. ++|+.+.|..|.. .++||+..|-+++..-..|+. |...+...++++.+...
T Consensus 176 ~~~~~~~E~~g~~a~~~-d~~-~lt~~~~tQ~~~~-~~~~l~~~l~~p~~~vrvi~~-dvGggfG~K~~~~~~~~----- 246 (731)
T COG1529 176 RKDPNPMEPHGVVAVPD-DGD-KLTVWASTQIPHR-LRGMLAAVLGIPPSKVRVISP-DVGGGFGSKGVVYVEEI----- 246 (731)
T ss_pred CcCccCcccccceeeEc-CCC-eEEEEEccCCchH-HHHHHHHHhCCCHHHeEEecC-CCCcccCCcccceeHHH-----
Confidence 45677888999 77888 777 9999999999997 689999999855554455555 88887777776443321
Q ss_pred CCCCCCCcccCCCcccccCCceeecCCeEEEEEeCCHHHHHHhcccceEEEecCCCCCcccCHHHHhhc-CCCcccCCcc
Q 000981 674 GGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDR-SSLFEVPSFL 752 (1202)
Q Consensus 674 ~g~n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAet~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~-~~~~~~~~~~ 752 (1202)
.+-.-..-.|-||.++-.. +.+.+.. +.-.+...+..-+... +.+......
T Consensus 247 ----------------~~~~aa~~~grpVk~~~tR---------~e~~~~~--~~~~~~~~~~~~~a~~dg~l~~~~~~- 298 (731)
T COG1529 247 ----------------LAALAAVVAGRPVKWIETR---------EELFVAT--GHRRATLIDVKLGADKDGRLLAIKGT- 298 (731)
T ss_pred ----------------HHHHHHHhcCCCeEEecch---------HHhhhcc--CCCCCceEEeeeecCcCCcEEeeeee-
Confidence 1111111223344333222 2222221 1110111111111111 111000000
Q ss_pred ccCCCCC-----cccc---cccCCEeEEEEEEEeCcccCCCcCCCeEEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCC
Q 000981 753 YPKPVGD-----ISKG---MNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIP 824 (1202)
Q Consensus 753 ~~~~~Gd-----v~~a---f~~a~~vvve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp 824 (1202)
.....|+ +... .....+. ++..|..++..|..||| ++.....++. ..||.+...++.+|+.|||+
T Consensus 299 ~~~~~Gay~~~~~~~~~~~~~~g~Y~-i~~~~~~~~~v~tn~~p-~~~~Rg~g~~-----~~~~a~E~~~d~lA~~Lgid 371 (731)
T COG1529 299 VAADTGAYNGPTVPAAAAGLARGPYK-IEAVYIEPYLVHTNMPP-NGAYRGAGRP-----EGTFALERAVDELAEELGID 371 (731)
T ss_pred EEecCCCccccchhHHHHHhcCCcee-cccceeeeEEEEcCCCC-CcccccCCCc-----hhHHHHHHHHHHHHHHhCCC
Confidence 0112222 2222 2233454 89999999999999999 6666654433 78999999999999999999
Q ss_pred CccEEEEEcccCCCCC-CCCCCccHHHHHHHHHHHhcC---CCEEEEeChHHHHhhcCCCCceE--------EEEEEEeC
Q 000981 825 EHNVRVITRRVGGAFG-GKAIKAMPVATACALAAYKLC---RPVRIYVKRKTDMIMVGGRHPMK--------ITYSVGFK 892 (1202)
Q Consensus 825 ~~kV~V~~~~vGGgFG-gK~~~~~~~~~~aAlaA~~~g---RPVkl~~tR~edm~~~~~R~~~~--------~~~k~g~~ 892 (1202)
+.+||++...-+|+|| ++......+...+..++++++ ||+|..|+|+++++...++.-+. ...++-++
T Consensus 372 p~eiR~~n~~~~g~~~~~~~~~~~~~~~~~~~~ak~~~~~~~~~k~~~~re~~~~~G~g~a~~~~~~~~~~~~~a~v~~~ 451 (731)
T COG1529 372 PVEIRLRNLIRGGPFGLGRRYDSGDYLEELDEAAKRFGWSERPVKPIWTREGDLRRGVGRAMYTEPSGAGPGEGARVRLE 451 (731)
T ss_pred HHHHhhhhccccCCCCCcccccCccHHHHHHHHHHhcCcccccCChhhhhcCCeeeeeEEEEEEEeccCCCCCcEEEEEc
Confidence 9999999999999999 555444555666778888887 99999999999988644443221 22344456
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCcchhh-hccccCCCCccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHH
Q 000981 893 SNGKITALQLNILIDAGLSPDVSPIMPS-NMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVA 971 (1202)
Q Consensus 893 ~dG~i~a~~~~~~~d~Ga~~~~s~~~~~-~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mDelA 971 (1202)
.||++....... + ++..... ......-.|.||+-+++.....|..++ .+||.+|+..+.|+.|.++++++
T Consensus 452 ~~g~v~v~~g~~--~------~G~G~~t~~~q~~ae~lgip~~~V~v~~gDt~~~~-~~~~s~GS~~~~~~~~A~~~a~~ 522 (731)
T COG1529 452 ADGTVTVRTGAT--D------IGQGTDTVLAQIAAEELGIPPDDVEVVHGDTDVPV-GGWGSVGSRGTAVAGSAVIDAAA 522 (731)
T ss_pred CCCcEEEEECCc--c------CCCcHHHHHHHHHHHHhCCCHHHEEEEecCCCCCC-CCCCCcCcccccchHHHHHHHHH
Confidence 677766443322 1 1111111 112224579999988888888888655 88999999999999999999999
Q ss_pred HHcCCCHHHHHHhhcCCCCCcccccccCCCccccCCHHHHHHHHHHhCCchhHHHHHHHHhhcCCcceeeeEeeeeeecc
Q 000981 972 STLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEV 1051 (1202)
Q Consensus 972 ~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~ 1051 (1202)
+..+.||..+|+..-....+. .|+.......|..+..........+..+.+|+.+.. .|+.
T Consensus 523 ~l~~k~~~~aa~~l~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 583 (731)
T COG1529 523 KLAEKDPVAAARMLGADAEDV------------------VLEDGAFKVGGGDRRSAVSLKEVAGKGLAPGLAVAA-SFGS 583 (731)
T ss_pred HHHHHHHHHHHhhhCCChhHe------------------eeccCeeeeccCCccceeeHHHhhhccccCcccccc-cccc
Confidence 999999999998872222111 233333344453221000000000111346777653 2332
Q ss_pred ----cccccceEEEEee-CCcEEEE--ECCcCCCCchhHHH--HHH---HHHHhccccc
Q 000981 1052 ----TLRSTPGKVSILS-DGSVVVE--VGGIEMGQGLWTKV--KQM---AAFALSSIKC 1098 (1202)
Q Consensus 1052 ----~~~~~~a~V~i~~-DGsV~V~--~g~~e~GQG~~T~~--aQI---aAe~Lgi~~~ 1098 (1202)
++....++|+|++ +|+|.|. ++..|+|.-+|+++ .|| +.+.||.+|.
T Consensus 584 ~~~~~~~A~~~EV~Vd~~tG~vrV~r~~~~~D~G~vvNP~~~~~Qv~GGi~~Gig~aL~ 642 (731)
T COG1529 584 DNTYPYGAHIAEVEVDPETGEVRVLRVVAVDDCGRVVNPKLAEGQVEGGILMGIGMALY 642 (731)
T ss_pred cccccceeEEEEEEEECCCCcEEEEEEEEEEecCCccCHHHHHHHHHhHHHHHHHHHhh
Confidence 2567899999995 9999999 88999999999987 788 6666666553
No 34
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.01 E-value=3.5e-10 Score=124.87 Aligned_cols=69 Identities=17% Similarity=0.401 Sum_probs=64.2
Q ss_pred EEEEEccCCCCCcHHHHHhhccCC-----cccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEE
Q 000981 21 EKFEVSSVDPSTTLLEFLRYHTRF-----KSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITT 95 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~~~~l-----~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 95 (1202)
+.++++ +++++|||++||+ ++. ++.|.||++|.||+|+|+| ||++++||++++.+++|.+++|
T Consensus 20 q~y~v~-~~~~~tvLd~L~~-i~~~~d~~l~~r~~C~~g~CGsCa~~I----------nG~p~laC~t~~~~~~~~~~it 87 (251)
T PRK12386 20 QDYTVE-VNEGEVVLDVIHR-LQATQAPDLAVRWNCKAGKCGSCSAEI----------NGRPRLMCMTRMSTFDEDETVT 87 (251)
T ss_pred EEEEEe-CCCCCCHHHHHHH-hccccCCCCcccCCCCCCcCCCCEEEE----------CccEeccHHhHHHHhCCCCeEE
Confidence 668886 7999999999998 788 5999999999999999999 8999999999999999999999
Q ss_pred eecCCC
Q 000981 96 SEGLGN 101 (1202)
Q Consensus 96 vEgl~~ 101 (1202)
||+|.+
T Consensus 88 iepl~~ 93 (251)
T PRK12386 88 VTPMRT 93 (251)
T ss_pred EccCCC
Confidence 999964
No 35
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.46 E-value=1.8e-07 Score=103.29 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=60.6
Q ss_pred EEEEEccCC-CCCcHHHHHhhcc----CCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEE
Q 000981 21 EKFEVSSVD-PSTTLLEFLRYHT----RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITT 95 (1202)
Q Consensus 21 ~~~~~~~~~-p~~~L~~~LR~~~----~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 95 (1202)
+.++++ ++ +++||+++|++.- ...+.+.||++|.||+|+|.| ||+++.||.+++..+ |.+++|
T Consensus 18 ~~~~v~-~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v----------nG~~~laC~t~~~~~-~~~~~t 85 (232)
T PRK05950 18 QTYEVD-VDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI----------NGKNGLACITPISDL-KKGKIV 85 (232)
T ss_pred EEEEeC-CCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE----------CCcCccchhChHhHc-CCCeEE
Confidence 456675 67 9999999999753 468889999999999999999 799999999999999 668999
Q ss_pred eecCCC
Q 000981 96 SEGLGN 101 (1202)
Q Consensus 96 vEgl~~ 101 (1202)
||+|.+
T Consensus 86 iepl~~ 91 (232)
T PRK05950 86 IRPLPG 91 (232)
T ss_pred EEECCC
Confidence 999974
No 36
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.29 E-value=7.6e-07 Score=97.63 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=60.8
Q ss_pred EEEEEccCCCCCcHHHHHhhc----cCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEe
Q 000981 21 EKFEVSSVDPSTTLLEFLRYH----TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~~----~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (1202)
+.++++ +++++||++.|+.. -...+.+.+|..|.||+|+|.| ||+++.||.+++..+ |.+++||
T Consensus 15 ~~~~v~-~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v----------nG~~~laC~t~v~~~-g~~~~~i 82 (220)
T TIGR00384 15 QSYEVP-ADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV----------NGKPVLACKTKVEDL-GQPVMKI 82 (220)
T ss_pred EEEEEe-CCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE----------CCEEhhhhhChHHHc-CCCcEEE
Confidence 567776 78999999999862 2567889999999999999999 799999999999988 9999999
Q ss_pred ecCCC
Q 000981 97 EGLGN 101 (1202)
Q Consensus 97 Egl~~ 101 (1202)
|+|.+
T Consensus 83 epl~~ 87 (220)
T TIGR00384 83 EPLPN 87 (220)
T ss_pred eeCCC
Confidence 99964
No 37
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.27 E-value=1e-06 Score=99.65 Aligned_cols=70 Identities=26% Similarity=0.354 Sum_probs=59.4
Q ss_pred EEEEEccCCCCCcHHHHHhh---ccCC-cccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccc--cCceEE
Q 000981 21 EKFEVSSVDPSTTLLEFLRY---HTRF-KSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV--NGCLIT 94 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~---~~~l-~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~--~g~~i~ 94 (1202)
+.++++ +++++|||++|+. +... -+.+.+|.+|.||+|+|.| ||+++.||.+++..+ ++.+++
T Consensus 25 ~~~~v~-~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I----------NG~~~laC~t~v~~~~~~~~~~~ 93 (279)
T PRK12576 25 QEYKVK-VDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI----------NGEPRLACKTLVLDVAKKYNSVI 93 (279)
T ss_pred EEEEEe-cCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE----------CCcEeccccCcHHHhhcCCCCcE
Confidence 557776 7999999999997 2322 3669999999999999999 899999999999998 367889
Q ss_pred EeecCCC
Q 000981 95 TSEGLGN 101 (1202)
Q Consensus 95 TvEgl~~ 101 (1202)
|||+|.+
T Consensus 94 tiePl~~ 100 (279)
T PRK12576 94 TIEPMDY 100 (279)
T ss_pred EEEECCC
Confidence 9999974
No 38
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.94 E-value=2.1e-05 Score=72.47 Aligned_cols=69 Identities=26% Similarity=0.456 Sum_probs=48.6
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCc-----cc----ccCCCCCCCCccEEEEeccCCCcCCCCcee-ecee
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK-----SV----KLGCGEGGCGACVVLLSKYNPELDQLEDFT-ISSC 81 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~-----g~----k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~-v~sC 81 (1202)
.+|+|+|||+++++. ++.||++.|+.. |+. .- +.-|..|.|+.|.|.| +++. +.||
T Consensus 2 ~~v~i~idG~~v~~~---~G~til~al~~~-gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev----------~g~~~v~AC 67 (82)
T PF13510_consen 2 KMVTITIDGKPVEVP---PGETILEALLAA-GIDIPRLCYHGRPRGGLCPIGSCRLCLVEV----------DGEPNVRAC 67 (82)
T ss_dssp EEEEEEETTEEEEEE---ET-BHHHHHHHT-T--B-EETTTS-EEBSSSSSTT-SS-EEEE----------SSEEEEETT
T ss_pred CEEEEEECCEEEEEc---CCCHHHHHHHHC-CCeEEEeeeccCcccccCCccccceEEEEE----------CCCcceEcc
Confidence 479999999999885 699999999863 332 22 3447789999999999 5667 9999
Q ss_pred ccccccccCceEEEe
Q 000981 82 LTLLCSVNGCLITTS 96 (1202)
Q Consensus 82 l~~~~~~~g~~i~Tv 96 (1202)
.+++. +|..|.|-
T Consensus 68 ~t~v~--~GM~V~T~ 80 (82)
T PF13510_consen 68 STPVE--DGMVVETQ 80 (82)
T ss_dssp T-B----TTEEEE--
T ss_pred cCCCc--CCcEEEEe
Confidence 99975 69999873
No 39
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=97.80 E-value=2.9e-05 Score=71.49 Aligned_cols=69 Identities=28% Similarity=0.462 Sum_probs=53.6
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEeccCCC--------cCCCCceeeceecccc
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKYNPE--------LDQLEDFTISSCLTLL 85 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~~~~--------~~~~~~~~v~sCl~~~ 85 (1202)
|+|..||+.++++ ++++++|+++|++ .|+. ...+|+.|.||+|.|.|.+-+.. ....+...+.+|.+.+
T Consensus 1 v~~~~~~~~~~~~-~~~g~~ll~al~~-~g~~-~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~ 77 (84)
T cd00207 1 VTINVPGSGVEVE-VPEGETLLDAARE-AGID-IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRV 77 (84)
T ss_pred CEEecCCCCEEEE-ECCCCcHHHHHHH-cCCC-cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCee
Confidence 4788888888886 7899999999997 5877 99999999999999999643221 1112355778998876
No 40
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=97.74 E-value=9.4e-05 Score=71.64 Aligned_cols=70 Identities=27% Similarity=0.511 Sum_probs=54.2
Q ss_pred EEEEEccCCCCCcHHHHHhh---cc-CCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCce--EE
Q 000981 21 EKFEVSSVDPSTTLLEFLRY---HT-RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCL--IT 94 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~---~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~--i~ 94 (1202)
+.++++ +++.+|+|+.|.. ++ +=-....+|.+|-||+|.|.| ||+++.+|.+++-.+.+.. .+
T Consensus 19 ~~y~v~-~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I----------NG~~~LAC~t~v~~~~~~~~~~i 87 (110)
T PF13085_consen 19 QEYEVP-VEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI----------NGRPRLACKTQVDDLIEKFGNVI 87 (110)
T ss_dssp EEEEEE-GGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE----------TTEEEEGGGSBGGGCTTSETBEE
T ss_pred EEEEec-CCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE----------CCceecceeeEchhccCCCcceE
Confidence 456776 6799999998753 32 233467999999999999999 8999999999999998763 78
Q ss_pred EeecCCC
Q 000981 95 TSEGLGN 101 (1202)
Q Consensus 95 TvEgl~~ 101 (1202)
|||=|.+
T Consensus 88 ~IePL~~ 94 (110)
T PF13085_consen 88 TIEPLPN 94 (110)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 8998864
No 41
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.65 E-value=7.1e-05 Score=95.71 Aligned_cols=96 Identities=23% Similarity=0.355 Sum_probs=76.8
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCcccc----cCCC-CCCCCccEEEEeccCCCcCCCCceeeceeccccccc
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVK----LGCG-EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV 88 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k----~gC~-~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~ 88 (1202)
|+|+|||+++++. +++|+++.+|. .|+.-.. .+|. .|.|+.|.|.| +|+.+.||.+|+.
T Consensus 2 v~i~IdG~~v~~~---~G~til~aa~~-~gi~iP~lC~~~~~~~~G~Cr~C~VeV----------~G~~~~AC~t~v~-- 65 (819)
T PRK08493 2 ITITINGKECEAQ---EGEYILNVARR-NGIFIPAICYLSGCSPTLACRLCMVEA----------DGKRVYSCNTKAK-- 65 (819)
T ss_pred eEEEECCEEEEeC---CCCHHHHHHHH-cCCccccccccCCCCCCccccceEEEE----------CCEEeccccCCCC--
Confidence 7899999998874 79999999997 4665532 4676 69999999999 6788999999984
Q ss_pred cCceEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChH
Q 000981 89 NGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (1202)
Q Consensus 89 ~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (1202)
+|..|.|-..-- ...-+.+++.+...|-.+|+.|..+
T Consensus 66 dGM~V~T~s~~v--~~~Rk~vle~ll~~HpldC~~Cd~~ 102 (819)
T PRK08493 66 EGMNILTNTPNL--MDERNAIMQTYDVNHPLECGVCDKS 102 (819)
T ss_pred CCCEEEecCHHH--HHHHHHHHHHHHhccCCCCCcCCCC
Confidence 899999942110 1234678889999999999999864
No 42
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.63 E-value=5.4e-05 Score=84.22 Aligned_cols=67 Identities=27% Similarity=0.500 Sum_probs=55.1
Q ss_pred EEEEEccCCCCCcHHHHH---hhccCCc-ccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEe
Q 000981 21 EKFEVSSVDPSTTLLEFL---RYHTRFK-SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~L---R~~~~l~-g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (1202)
+.++++ +++++||++.| ++++..+ +.+.+|..|.||+|+|.| ||+++.+|.+++..+.+. +||
T Consensus 25 ~~~~v~-~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I----------nG~~~laC~t~~~~~~~~--~~i 91 (244)
T PRK12385 25 QTYEVP-YDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV----------NNVPKLACKTFLRDYTGG--MKV 91 (244)
T ss_pred EEEEee-CCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE----------CccChhhHhhHHHHcCCC--eEE
Confidence 566676 68999999999 4555455 678899999999999999 899999999999987532 678
Q ss_pred ecCC
Q 000981 97 EGLG 100 (1202)
Q Consensus 97 Egl~ 100 (1202)
|=|.
T Consensus 92 ePl~ 95 (244)
T PRK12385 92 EALA 95 (244)
T ss_pred eeCC
Confidence 8775
No 43
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=97.41 E-value=0.00019 Score=65.31 Aligned_cols=48 Identities=35% Similarity=0.690 Sum_probs=42.0
Q ss_pred EEECCEEEEEccCCCCCc-HHHHHhhccCCcccccCCCCCCCCccEEEEec
Q 000981 16 FAVNGEKFEVSSVDPSTT-LLEFLRYHTRFKSVKLGCGEGGCGACVVLLSK 65 (1202)
Q Consensus 16 ~~vNg~~~~~~~~~p~~~-L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~ 65 (1202)
+++||+.++++ +.++.+ |++.|++ .+-.++..+|+.|.||.|.|.|.+
T Consensus 1 i~i~g~~~~~~-~~~~~~~ll~~~~~-~~gi~i~~~C~~g~Cg~C~v~v~~ 49 (78)
T PF00111_consen 1 ITINGKGVTVE-VPPGETLLLDALER-AGGIGIPYSCGGGGCGTCRVRVLE 49 (78)
T ss_dssp EETTTEEEEEE-EETTSBBHHHHHHH-TTTTTSTTSSSSSSSSTTEEEEEE
T ss_pred CEECCeEEEEE-eCCCccHHHHHHHH-cCCCCcccCCCCCccCCcEEEEee
Confidence 47899999997 688888 9999996 457889999999999999999853
No 44
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.25 E-value=0.00047 Score=87.70 Aligned_cols=92 Identities=23% Similarity=0.479 Sum_probs=66.2
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCC------CCCCCCccEEEEeccCCCcCCCCceeeceeccccc
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC------GEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC------~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 86 (1202)
+|+|+|||+++++. +++||++.|+.. |+.-. ..| ..|.|+.|.|.|. | ..+.+.||++++.
T Consensus 3 ~v~~~idg~~~~~~---~g~ti~~a~~~~-g~~ip-~~c~~~~~~~~g~C~~C~V~v~------g--~~~~~~aC~t~~~ 69 (652)
T PRK12814 3 TISLTINGRSVTAA---PGTSILEAAASA-GITIP-TLCFHQELEATGSCWMCIVEIK------G--KNRFVPACSTAVS 69 (652)
T ss_pred eEEEEECCEEEEeC---CcCcHHHHHHHc-CCccc-cccCCCCCCCccccceeEEEEC------C--CcceecCcCCCCC
Confidence 68999999988874 799999999974 65533 344 4799999999992 1 1235899999984
Q ss_pred cccCceEEEeecCCCCCCCcchHHHHHHhcCCCC-CCCCC
Q 000981 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQ-CGFCT 125 (1202)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~q-CG~Ct 125 (1202)
+|..|.| . ...+..+|+...+.-.++ |++|.
T Consensus 70 --~Gm~v~t----~--~~~~~~~r~~~le~l~~~~c~~C~ 101 (652)
T PRK12814 70 --EGMVIET----E--NAELHAMRRQSLERLIEQHCGDCL 101 (652)
T ss_pred --CCCEEEe----C--cHHHHHHHHHHHHHHHhhcccccC
Confidence 7999999 2 345667774444333333 88885
No 45
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.14 E-value=0.004 Score=72.52 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=54.3
Q ss_pred EEEEEccCCCCCcHHHHHhhc-cCCcc---cccCCCCCCCCccEEEEeccCCCcCCCCceeeceecccccc-cc------
Q 000981 21 EKFEVSSVDPSTTLLEFLRYH-TRFKS---VKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS-VN------ 89 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~~-~~l~g---~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~-~~------ 89 (1202)
+.++++ +++++|+||.|+.. ..+.+ -..+|..|.||+|.|.| +|+++.||.+++.. ++
T Consensus 19 ~~~~v~-~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i----------nG~~~laC~t~v~~~~~~~~~~~ 87 (329)
T PRK12577 19 QTYTLE-VEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI----------NGRSALACKENVGSELARLSDSN 87 (329)
T ss_pred EEEEEE-CCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE----------CCeeecCcccchhhhhccccccc
Confidence 457776 78999999999863 12223 45789999999999999 89999999999875 22
Q ss_pred --CceEEEeecCCC
Q 000981 90 --GCLITTSEGLGN 101 (1202)
Q Consensus 90 --g~~i~TvEgl~~ 101 (1202)
+...+|||=|++
T Consensus 88 ~~~~~~i~iePl~~ 101 (329)
T PRK12577 88 SGAIPEITIAPLGN 101 (329)
T ss_pred cCCCCeEEEEECCC
Confidence 235678998865
No 46
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.02 E-value=0.0019 Score=71.77 Aligned_cols=96 Identities=17% Similarity=0.310 Sum_probs=69.5
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCc-----ccccCCCCCCCCccEEEEeccCCCcCCCCceeeceecccccc
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK-----SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~-----g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~ 87 (1202)
+|+|+|||+.+++ .+++|||+.++.. |+. ..+.-|..|.||.|.|.|. | ..+.+.||.+++.
T Consensus 3 ~v~i~idg~~~~~---~~g~til~a~~~~-gi~ip~~C~~~~~~~~G~C~~C~V~v~------g--~~~~~~aC~t~v~- 69 (234)
T PRK07569 3 VKTLTIDDQLVSA---REGETLLEAAREA-GIPIPTLCHLDGLSDVGACRLCLVEIE------G--SNKLLPACVTPVA- 69 (234)
T ss_pred eEEEEECCEEEEe---CCCCHHHHHHHHc-CCCCCcCcCCCCCCCCCccCCcEEEEC------C--CCccccCcCCCCC-
Confidence 5899999999666 4799999999853 443 2222344999999999992 1 1235789999977
Q ss_pred ccCceEEEeecCCCCCCCcc----hHHHHHHhcCCCCCCCCChHH
Q 000981 88 VNGCLITTSEGLGNSKTGFH----PIHQRFAGFHASQCGFCTPGM 128 (1202)
Q Consensus 88 ~~g~~i~TvEgl~~~~~~~h----~iq~a~~~~~~~qCG~CtPG~ 128 (1202)
+|..|.|- ...+. -+-+.+...|-.-|.-|..+-
T Consensus 70 -~Gm~v~t~------~~~~~~~rk~~l~~ll~~h~~~C~~C~~~g 107 (234)
T PRK07569 70 -EGMVVQTN------TPRLQEYRRMIVELLFAEGNHVCAVCVANG 107 (234)
T ss_pred -CCCEEEEC------CHHHHHHHHHHHHHHHHhccccCcccCCCC
Confidence 79999983 12333 355566788999999998754
No 47
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=96.98 E-value=0.0008 Score=74.67 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=55.3
Q ss_pred EEEEEccCCCCCcHHHHHhhcc-CC---cccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEe
Q 000981 21 EKFEVSSVDPSTTLLEFLRYHT-RF---KSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~~~-~l---~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (1202)
+.++++ +++++|+||.|..-- .+ -+...+|.+|.||+|.|.| ||+++.+|.+.+-.+.+. .+||
T Consensus 24 ~~y~v~-~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I----------NG~~~LAC~t~v~~~~~~-~i~i 91 (239)
T PRK13552 24 VTYQLE-ETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI----------NGRPTLACRTLTSDYPDG-VITL 91 (239)
T ss_pred EEEEec-CCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE----------CCeEhhhhhccHhhcCCC-cEEE
Confidence 557786 789999999887421 22 3457999999999999999 899999999999887422 5789
Q ss_pred ecCCC
Q 000981 97 EGLGN 101 (1202)
Q Consensus 97 Egl~~ 101 (1202)
|=|.+
T Consensus 92 ePl~~ 96 (239)
T PRK13552 92 MPLPV 96 (239)
T ss_pred EECCC
Confidence 98864
No 48
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=96.92 E-value=0.0018 Score=79.71 Aligned_cols=64 Identities=28% Similarity=0.589 Sum_probs=50.7
Q ss_pred EEEEEccCCCCCcHHHHHhhccCCcc----cccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEe
Q 000981 21 EKFEVSSVDPSTTLLEFLRYHTRFKS----VKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~~~~l~g----~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (1202)
+.++++ +++++||||.|++..+.+. .+.+|..|.||+|+|.+ +|+++.+|.+++. +|..|.+.
T Consensus 21 ~~~~v~-~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v----------~G~~~laC~~~~~--~~~~i~~~ 87 (486)
T PRK06259 21 ESYEVP-VKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI----------NGEPVLACKTEVE--DGMIIEPL 87 (486)
T ss_pred EEEEEe-CCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE----------CCeEecccccCCC--CCCEEEec
Confidence 456665 7899999999996433323 37899999999999998 6889999999985 57777776
Q ss_pred e
Q 000981 97 E 97 (1202)
Q Consensus 97 E 97 (1202)
.
T Consensus 88 ~ 88 (486)
T PRK06259 88 D 88 (486)
T ss_pred C
Confidence 4
No 49
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.90 E-value=0.0015 Score=72.96 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=54.0
Q ss_pred EEEEEccCCCCCcHHHHHhhc----cCC-------cccccCCCCCCCCccEEEEeccCCCcCCCCceeeceecccccccc
Q 000981 21 EKFEVSSVDPSTTLLEFLRYH----TRF-------KSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVN 89 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~~----~~l-------~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~ 89 (1202)
+.++++ +++++|+||.|..- +.+ -....+|.+|.||+|.|.| ||++..+|.+.+-.+.
T Consensus 23 q~y~v~-~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I----------NG~p~LAC~t~v~~~~ 91 (249)
T PRK08640 23 EEFEIP-YRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI----------NGKPRQACTALIDQLE 91 (249)
T ss_pred EEEEec-CCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE----------CCccchhhhChHHHcC
Confidence 557786 68999999988632 112 2346899999999999999 8999999999998773
Q ss_pred CceEEEeecCCC
Q 000981 90 GCLITTSEGLGN 101 (1202)
Q Consensus 90 g~~i~TvEgl~~ 101 (1202)
..+|||=|.+
T Consensus 92 --~~i~iePl~~ 101 (249)
T PRK08640 92 --QPIRLEPMST 101 (249)
T ss_pred --CcEEEEECCC
Confidence 3478998863
No 50
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=96.86 E-value=0.0011 Score=73.89 Aligned_cols=70 Identities=24% Similarity=0.433 Sum_probs=55.7
Q ss_pred EEEEEccCCCCCcHHHHHhh---cc-----CCcccccCCCCCCCCccEEEEeccCCCcCCCCcee------eceeccccc
Q 000981 21 EKFEVSSVDPSTTLLEFLRY---HT-----RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFT------ISSCLTLLC 86 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~---~~-----~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~------v~sCl~~~~ 86 (1202)
+.++++.+++++|+|+.|.. ++ .=-+...+|.+|.||+|.|.| ||++ ..+|.+.+.
T Consensus 20 q~y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I----------NG~p~~~~~~~LAC~t~~~ 89 (250)
T PRK07570 20 ETYEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI----------NGRPHGPDRGTTTCQLHMR 89 (250)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE----------CCccCCCCcccchhhhhhh
Confidence 55777645799999998863 11 114678999999999999999 8999 899999988
Q ss_pred cccCceEEEeecCC
Q 000981 87 SVNGCLITTSEGLG 100 (1202)
Q Consensus 87 ~~~g~~i~TvEgl~ 100 (1202)
.+.+...+|||=|.
T Consensus 90 ~~~~~~~i~iePl~ 103 (250)
T PRK07570 90 SFKDGDTITIEPWR 103 (250)
T ss_pred hcCCCCeEEEEECC
Confidence 87654568899884
No 51
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.85 E-value=0.0032 Score=72.45 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=100.6
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEccc
Q 000981 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (1202)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (1202)
.+.+.+ ...|+.|.|.+|+.++++-... .+-...++.|||.+.+-.. ..+..+|++++. +..+..+++.+++||+
T Consensus 29 t~~igg~a~~~v~p~~~edl~~~v~~a~~-~~ip~~vlGgGSNllv~d~-g~~gvVI~l~~~--~~~i~~~~~~v~v~AG 104 (302)
T PRK14652 29 AVRVGGPADLLVRPADPDALSALLRAVRE-LGVPLSILGGGANTLVADA-GVRGVVLRLPQD--FPGESTDGGRLVLGAG 104 (302)
T ss_pred EeecCCcceEEEEcCCHHHHHHHHHHHHH-CCCcEEEEcCCcceeecCC-CEeeEEEEecCC--cceEEecCCEEEEECC
Confidence 345555 5678899999999988763211 2346888999998865332 234688998762 5566667789999999
Q ss_pred CcHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCc
Q 000981 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 392 (1202)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g 392 (1202)
+++.+|.+.+.++. +. -+...++.+ ||+||.+++.... +-.++.=.+. .|++...+|
T Consensus 105 ~~~~~L~~~~~~~G----------L~----GlE~l~gIP----GTvGGav~mNaGa-~ggei~d~v~----~v~vv~~~G 161 (302)
T PRK14652 105 APISRLPARAHAHG----------LV----GMEFLAGIP----GTLGGAVAMNAGT-KLGEMKDVVT----AVELATADG 161 (302)
T ss_pred CcHHHHHHHHHHcC----------Cc----ccccccCCC----cchhHHHHHcCCC-CceEhhheEE----EEEEECCCC
Confidence 99999999866541 11 122333332 6999999887541 0022222222 455565666
Q ss_pred eEEEehhh-hhc--CCCCCCCceEEEEEcCCCC
Q 000981 393 CEKLMLEE-FLE--RPPLDSRSILLSVEIPCWD 422 (1202)
Q Consensus 393 ~R~vpl~d-F~~--~~~l~~~eii~~I~iP~~~ 422 (1202)
.++++-+| +|. ...+..+-||+++.+...+
T Consensus 162 ~~~~~~~e~~f~YR~s~~~~~~II~~a~~~L~~ 194 (302)
T PRK14652 162 AGFVPAAALGYAYRTCRLPPGAVITRVEVRLRP 194 (302)
T ss_pred cEEeehhhcCcccceeccCCCeEEEEEEEEEec
Confidence 55677666 332 2223334577777665543
No 52
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=96.53 E-value=0.0037 Score=63.28 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=74.0
Q ss_pred eEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHH
Q 000981 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (1202)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (1202)
.+++|+|.+|+.++++.... .+-..++.+||++..-... .....+||++++.....+..++..++++|++++.+|.+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 47899999999998874321 2456788888888752111 356789999986654455555789999999999999998
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhc-ccccccccccCCccccccC
Q 000981 322 LKEETKEFHSEALMVFKKIAGHMEKIA-SRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~iA-s~qIRN~aTiGGNl~~a~p 367 (1202)
|...-. .+. .+.--.-+|+||.|++..-
T Consensus 81 l~~~g~------------------~~~~~~~~~~~~tvGG~i~~~~~ 109 (139)
T PF01565_consen 81 LAPRGL------------------MLPVEPGSGIPGTVGGAIAGNGH 109 (139)
T ss_dssp HHHHTE------------------EESSGGGSTTTSBHHHHHHTT-E
T ss_pred cccccc------------------cccccccccccceEchhhcCCCc
Confidence 755411 111 1333456799999988764
No 53
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=96.49 E-value=0.0038 Score=68.32 Aligned_cols=69 Identities=30% Similarity=0.505 Sum_probs=56.6
Q ss_pred EEEEEccCCCCCcHHHHHhh---cc-CCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEe
Q 000981 21 EKFEVSSVDPSTTLLEFLRY---HT-RFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (1202)
Q Consensus 21 ~~~~~~~~~p~~~L~~~LR~---~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (1202)
+.++|+ .++++++||.|.. +. .=-.....|.+|.||+|.+.| ||++..+|.+.+.++... ++||
T Consensus 20 ~~yev~-~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I----------NG~prLAC~t~~~~~~~~-~i~i 87 (234)
T COG0479 20 QTYEVP-YDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI----------NGKPRLACKTLMKDLEEG-VITI 87 (234)
T ss_pred EEEEec-CCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE----------CCccccchhchhhhccCC-ceEE
Confidence 356776 6799999998754 21 223467899999999999999 899999999999998766 8899
Q ss_pred ecCCC
Q 000981 97 EGLGN 101 (1202)
Q Consensus 97 Egl~~ 101 (1202)
|=|.+
T Consensus 88 ePL~~ 92 (234)
T COG0479 88 EPLPN 92 (234)
T ss_pred EECCC
Confidence 99874
No 54
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.39 E-value=0.005 Score=68.15 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=52.4
Q ss_pred EEEEEccCCC-CCcHHHHHhhccCCc---ccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEe
Q 000981 21 EKFEVSSVDP-STTLLEFLRYHTRFK---SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (1202)
Q Consensus 21 ~~~~~~~~~p-~~~L~~~LR~~~~l~---g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (1202)
+.++++ +++ ++|+||.|..--... ....+|.+|.||+|.|+| ||++..+|.+.+-.+.+ -+||
T Consensus 23 ~~y~v~-~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i----------NG~~~LaC~t~~~~~~~--~i~i 89 (235)
T PRK12575 23 QRYEIA-PRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI----------NGRNGLACLTNMQALPR--EIVL 89 (235)
T ss_pred EEEEec-CCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE----------CCeEcchhhCcHhHcCC--CEEE
Confidence 456675 454 689999887532333 356899999999999999 89999999999988743 3689
Q ss_pred ecCCC
Q 000981 97 EGLGN 101 (1202)
Q Consensus 97 Egl~~ 101 (1202)
|=|.+
T Consensus 90 ePl~~ 94 (235)
T PRK12575 90 RPLPG 94 (235)
T ss_pred eECCC
Confidence 98853
No 55
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.18 E-value=0.032 Score=64.03 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=88.6
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEccc
Q 000981 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (1202)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (1202)
.+.+.+ ...|+.|.|.+|+.++++-.. .+-...++.|||-+.+-.. ..+..+|.+.+ |+.|+.+++.+++||+
T Consensus 27 t~~iGG~A~~~v~p~s~eel~~~~~~~~--~~~p~~vlG~GSNlLv~d~-g~~gvVI~l~~---~~~i~i~~~~v~v~AG 100 (297)
T PRK14653 27 SFKIGGPVPLFAIPNSTNGFIETINLLK--EGIEVKILGNGTNVLPKDE-PMDFVVVSTER---LDDIFVDNDKIICESG 100 (297)
T ss_pred EeeeCcEEEEEEecCCHHHHHHHHHHHh--cCCCEEEEcCCeeEEEecC-CccEEEEEeCC---cCceEEeCCEEEEeCC
Confidence 456666 667899999999999886321 1345788899998876443 23467788755 5666767789999999
Q ss_pred CcHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCc
Q 000981 313 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 392 (1202)
Q Consensus 313 vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g 392 (1202)
+++.+|...+.+.. +.. +..++.. =|||||++++.... +-.++.=.+. +|++.+.+.
T Consensus 101 ~~l~~L~~~~~~~G----------L~G----lE~l~gI----PGTVGGAv~mNAGa-yG~ei~d~l~----~V~~~d~g~ 157 (297)
T PRK14653 101 LSLKKLCLVAAKNG----------LSG----FENAYGI----PGSVGGAVYMNAGA-YGWETAENIV----EVVAYDGKK 157 (297)
T ss_pred CcHHHHHHHHHHCC----------Ccc----hhhhcCC----chhHHHHHHHhCcc-CchhhheeEE----EEEEECCCE
Confidence 99999998765541 111 1223333 47899998877652 1133332332 566665222
Q ss_pred eEEEehhh
Q 000981 393 CEKLMLEE 400 (1202)
Q Consensus 393 ~R~vpl~d 400 (1202)
.++++-+|
T Consensus 158 v~~~~~~e 165 (297)
T PRK14653 158 IIRLGKNE 165 (297)
T ss_pred EEEEchhh
Confidence 45555554
No 56
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=96.10 E-value=0.0067 Score=68.35 Aligned_cols=68 Identities=22% Similarity=0.377 Sum_probs=52.0
Q ss_pred EEEEccCCC-CCcHHHHHhhc-cCC---cccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEe
Q 000981 22 KFEVSSVDP-STTLLEFLRYH-TRF---KSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS 96 (1202)
Q Consensus 22 ~~~~~~~~p-~~~L~~~LR~~-~~l---~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 96 (1202)
.++++ +.+ ++|+||.|+.- -++ -....+|.+|.||+|.|.| ||+++.+|.+.+-.+.+ ..+||
T Consensus 63 ~y~v~-~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I----------NG~p~LAC~t~v~~~~~-~~i~i 130 (276)
T PLN00129 63 SYKVD-LNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI----------DGKNTLACLTKIDRDES-GPTTI 130 (276)
T ss_pred EEEeC-CCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE----------CCcccccccccHhhcCC-CcEEE
Confidence 45665 454 79999988751 122 3457899999999999999 89999999999987643 34679
Q ss_pred ecCCC
Q 000981 97 EGLGN 101 (1202)
Q Consensus 97 Egl~~ 101 (1202)
|=|.+
T Consensus 131 ePl~~ 135 (276)
T PLN00129 131 TPLPH 135 (276)
T ss_pred EECCC
Confidence 98853
No 57
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.00 E-value=0.032 Score=64.30 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=98.7
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccC
Q 000981 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (1202)
Q Consensus 235 ~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (1202)
+.+.+ ...++.|.|.+|+.++++.... .+-...++.||+.+.+ .+......+||+++ .|+.|+.+++.+++||++
T Consensus 25 ~~igg~a~~vv~P~s~edv~~~v~~a~~-~~~p~~v~GgGsnll~-~d~g~~gvvI~l~~--~l~~i~~~~~~v~v~aG~ 100 (298)
T PRK13905 25 FRVGGPADYLVEPADIEDLQEFLKLLKE-NNIPVTVLGNGSNLLV-RDGGIRGVVIRLGK--GLNEIEVEGNRITAGAGA 100 (298)
T ss_pred eecCceEeEEEeCCCHHHHHHHHHHHHH-cCCCEEEEeCCceEEe-cCCCcceEEEEecC--CcceEEecCCEEEEECCC
Confidence 44555 5567999999999988763321 2346888999998754 22123478899874 466777777899999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC-CC-CCCchHHHHHhcCcEEEEEeCC
Q 000981 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR-KH-FPSDVATVLLGAGAMVNIMTGQ 391 (1202)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p-~~-~~SD~~~~L~al~A~v~i~s~~ 391 (1202)
++.+|.+.+.+.. +. -+...++. -+||||.+++... .+ .-+|.+ -.|++...+
T Consensus 101 ~~~~L~~~l~~~G----------l~----gle~~~gi----pGTVGGai~~NaG~~G~~~~d~v-------~~v~vv~~~ 155 (298)
T PRK13905 101 PLIKLARFAAEAG----------LS----GLEFAAGI----PGTVGGAVFMNAGAYGGETADVL-------ESVEVLDRD 155 (298)
T ss_pred cHHHHHHHHHHcC----------CC----cchhccCC----CcchhHHHHHcCCcCceEhheeE-------EEEEEEeCC
Confidence 9999999876541 10 11223333 2789999875433 21 011211 134555555
Q ss_pred c-eEEEehhh-hhc--CCCCC-CCceEEEEEcCCCC
Q 000981 392 K-CEKLMLEE-FLE--RPPLD-SRSILLSVEIPCWD 422 (1202)
Q Consensus 392 g-~R~vpl~d-F~~--~~~l~-~~eii~~I~iP~~~ 422 (1202)
| .++++-+| ||. ...+. ...||+++.+...+
T Consensus 156 G~~~~~~~~e~~~~yR~s~~~~~~gII~~~~l~l~~ 191 (298)
T PRK13905 156 GEIKTLSNEELGFGYRHSALQEEGLIVLSATFQLEP 191 (298)
T ss_pred CCEEEEEHHHcCCcCccccCCCCCEEEEEEEEEEcC
Confidence 5 56677666 443 22333 24599988876544
No 58
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=95.73 E-value=0.02 Score=69.88 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=79.0
Q ss_pred ceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHH
Q 000981 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (1202)
..+..|.|.+|+.++++.... .+-.....+|||++.--.... ..++||++++..+..|..++..+++.+++++.+|.+
T Consensus 33 ~~v~~p~s~~eV~~iv~~a~~-~~~~v~prG~gts~~g~~~~~-~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~ 110 (459)
T COG0277 33 LAVVFPKSEEEVAAILRLANE-NGIPVVPRGGGTSLSGGAVPD-GGVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLEK 110 (459)
T ss_pred CEEEccCCHHHHHHHHHHHHH-cCCeEEEECCCCCccccccCC-CcEEEEchhhcchhccCcCCCEEEEcCCccHHHHHH
Confidence 367899999999998873311 122377789999885511101 278999999666656666688999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
.|..+...+ =..++.++.+||||||++.+-
T Consensus 111 ~l~~~G~~~-----------------p~~p~s~~~~tIGG~ia~~~~ 140 (459)
T COG0277 111 ALAPHGLFL-----------------PVDPSSSGTATIGGNIATNAG 140 (459)
T ss_pred HHHHcCCcc-----------------CCCccccccceEccchhcCCC
Confidence 877652211 135677799999999999876
No 59
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=95.70 E-value=0.021 Score=53.01 Aligned_cols=48 Identities=31% Similarity=0.602 Sum_probs=38.7
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
.|+|.-+|+.+.+. +.+.+||+.|++. |+ ....+|..|.||+|.+-+-
T Consensus 3 ~v~~~~~~~~~~~~--~~~~tlL~a~~~~-gi-~~p~~Cr~G~Cg~C~~~~~ 50 (84)
T PRK10713 3 RVTLRITGTQLLCQ--DEHPSLLAALESH-NV-AVEYQCREGYCGSCRTRLV 50 (84)
T ss_pred EEEEEeCCcEEEec--CCCCcHHHHHHHc-CC-CCCCCCCCeECCCCEeEEE
Confidence 46777778776664 3569999999864 76 7899999999999999883
No 60
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=95.68 E-value=0.047 Score=67.17 Aligned_cols=159 Identities=11% Similarity=0.221 Sum_probs=97.7
Q ss_pred ceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHH
Q 000981 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (1202)
..+++|+|.+|+.++++.... .+...+.++||++..-.- .....+||++++..+-.|..+...++++|++++.+|.+
T Consensus 63 ~~~~~P~s~eEV~~iV~~A~~-~g~~Vr~~GsGhS~sg~a--~t~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L~~ 139 (541)
T TIGR01676 63 RTFHQPEAIEELEGIVKQANE-KKARIRPVGSGLSPNGIG--LSRAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQLVD 139 (541)
T ss_pred ceEECCCCHHHHHHHHHHHHH-cCCcEEEECCCcCCCCcc--cCCCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHHHH
Confidence 468999999999999875422 234688899998763311 11245899998877666677778999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCc-eEEEehh
Q 000981 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEKLMLE 399 (1202)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g-~R~vpl~ 399 (1202)
.|.++.- .+.+..--+..||||+|+++.-.. -.. ...+...=-.++|+..+| .+.+.-+
T Consensus 140 ~L~~~Gl------------------al~n~gsi~~~TIGGaiatgtHGt-g~~-~G~l~d~V~~l~lVta~G~vv~~s~~ 199 (541)
T TIGR01676 140 AIKEYGI------------------TLQNFASIREQQIGGIIQVGAHGT-GAK-LPPIDEQVIAMKLVTPAKGTIEISKD 199 (541)
T ss_pred HHHHcCC------------------EeccCCCCCCceEccccccCCcCC-CCC-CCCHHHhEEEEEEEECCCCEEEECCC
Confidence 8766410 111222235578999999875421 011 111222222355555443 4444332
Q ss_pred ---hhhc--CCCCCCCceEEEEEcCCCC
Q 000981 400 ---EFLE--RPPLDSRSILLSVEIPCWD 422 (1202)
Q Consensus 400 ---dF~~--~~~l~~~eii~~I~iP~~~ 422 (1202)
|.|. ...+..=-||+++.+...+
T Consensus 200 ~~pdLF~AargslG~LGVItevTLr~~P 227 (541)
T TIGR01676 200 KDPELFFLARCGLGGLGVVAEVTLQCVE 227 (541)
T ss_pred CCHHHHHHHhcCCCceEeEEEEEEEEEe
Confidence 4443 3344455688888876543
No 61
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.56 E-value=0.094 Score=60.57 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=71.7
Q ss_pred CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHH
Q 000981 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (1202)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (1202)
..-++.|.|.+|+.++++-... .+-...++.|||.+.+... .....+|++++ |+.|+.+++.+++||++++.+|.
T Consensus 37 a~~vv~p~~~edv~~~l~~a~~-~~ip~~v~GgGSNll~~d~-g~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~L~ 111 (305)
T PRK12436 37 ADVFVAPTNYDEIQEVIKYANK-YNIPVTFLGNGSNVIIKDG-GIRGITVSLIH---ITGVTVTGTTIVAQCGAAIIDVS 111 (305)
T ss_pred EEEEEecCCHHHHHHHHHHHHH-cCCCEEEEcCCeEEEEeCC-CeeEEEEEeCC---cCcEEEeCCEEEEEeCCcHHHHH
Confidence 3468899999999988752211 2346888999998875332 23467899875 55677778899999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
+.+.++. +.. +...+ ---+||||++.+...
T Consensus 112 ~~~~~~g----------l~G----le~~~----giPGtVGGav~~NAG 141 (305)
T PRK12436 112 RIALDHN----------LTG----LEFAC----GIPGSVGGALYMNAG 141 (305)
T ss_pred HHHHHcC----------Ccc----chhhc----CCccchhHHHHhcCc
Confidence 8766541 110 11111 124799999987655
No 62
>CHL00134 petF ferredoxin; Validated
Probab=95.31 E-value=0.035 Score=53.17 Aligned_cols=49 Identities=14% Similarity=0.382 Sum_probs=39.8
Q ss_pred EEEEEE--CCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 13 SVVFAV--NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 13 ~i~~~v--Ng~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
.|.|.. +|..+.++ ++++.+||+.|++. |+ ....+|+.|.||.|.|-+-
T Consensus 5 ~v~~~~~~~~~~~~~~-~~~~~tLL~a~~~~-Gi-~i~~~C~~G~Cg~C~v~v~ 55 (99)
T CHL00134 5 KVTLLSEEEGIDVTID-CPDDVYILDAAEEQ-GI-DLPYSCRAGACSTCAGKVT 55 (99)
T ss_pred EEEEEecCCCCeEEEE-ECCCCcHHHHHHHc-CC-CCCcCCCCccCCCCEEEEE
Confidence 344444 77777776 68999999999864 75 7888999999999999983
No 63
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=95.27 E-value=0.034 Score=53.04 Aligned_cols=48 Identities=15% Similarity=0.365 Sum_probs=37.9
Q ss_pred EEE-EECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 14 VVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 14 i~~-~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
|+| +=+|+.++++ ++++.+||+.|++. |+ ....+|+.|.||.|.|-+-
T Consensus 5 v~~~~~~~~~~~~~-~~~g~tLLda~~~~-Gi-~i~~~C~~G~Cg~C~v~v~ 53 (97)
T TIGR02008 5 VTLVNPDGGEETIE-CPDDQYILDAAEEA-GI-DLPYSCRAGACSTCAGKVE 53 (97)
T ss_pred EEEEECCCCEEEEE-ECCCCcHHHHHHHc-CC-CCCcCCCCccCCCCceEEE
Confidence 444 2377666675 67999999999864 76 4788999999999999993
No 64
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=95.27 E-value=0.1 Score=63.36 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=92.0
Q ss_pred ceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHH
Q 000981 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (1202)
...++|+|.+|+.++++.... .+...++++||++..-.- .....+||++++..+..|..+...++++|++++.+|.+
T Consensus 16 ~~v~~P~s~eev~~iv~~A~~-~~~~v~v~G~GhS~s~~~--~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~L~~ 92 (438)
T TIGR01678 16 EVYYQPTSVEEVREVLALARE-QKKKVKVVGGGHSPSDIA--CTDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHE 92 (438)
T ss_pred CEEEecCCHHHHHHHHHHHHH-CCCeEEEECCCCCCCCCc--cCCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHHHHHH
Confidence 357899999999998874321 234678888986643210 12358999988655544555556899999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCce-EEEeh-
Q 000981 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKC-EKLML- 398 (1202)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~-R~vpl- 398 (1202)
.|.++.- . +...++ =+..||||.|+++.-.. +--...+...=-.++++..+|+ .+++-
T Consensus 93 ~L~~~Gl---------~------l~~~g~---~~~~TvGG~iatg~hG~--~~~~G~~~d~V~~l~vV~~~G~i~~~s~~ 152 (438)
T TIGR01678 93 QLDEHGY---------S------MSNLGS---ISEVSVAGIISTGTHGS--SIKHGILATQVVALTIMTADGEVLECSEE 152 (438)
T ss_pred HHHHcCC---------E------ecCCCC---CCCceeeehhcCCCCCC--ccccCcHHhhEEEEEEEcCCCcEEEeCCC
Confidence 8765410 0 111122 24589999887766431 1000111111123555555663 33432
Q ss_pred --hhhhc--CCCCCCCceEEEEEcCCC
Q 000981 399 --EEFLE--RPPLDSRSILLSVEIPCW 421 (1202)
Q Consensus 399 --~dF~~--~~~l~~~eii~~I~iP~~ 421 (1202)
.|.|. ...+..--||+++.+...
T Consensus 153 ~~~dlf~a~~~~~G~lGIIt~vtl~l~ 179 (438)
T TIGR01678 153 RNADVFQAARVSLGCLGIIVTVTIQVV 179 (438)
T ss_pred CChhHHHHHhcCCCceEeeEEEEEEEE
Confidence 23443 223444568888777654
No 65
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=95.19 E-value=0.033 Score=72.71 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=75.6
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhc----cCCcccccCCCCCCCCccEEEEeccCCCcCCCCceeeceecccccc
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYH----TRFKSVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 87 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~----~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~ 87 (1202)
.+|+|+|||+++++. +++||++..+.. -+|...+..+.-|.|.-|.|.|. + ..+.+.||.+|+.
T Consensus 3 ~~v~~~idg~~~~~~---~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~------g--~~~~~~aC~t~v~- 70 (797)
T PRK07860 3 DLVTLTIDGVEVSVP---KGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVE------G--QRKPQASCTTTVT- 70 (797)
T ss_pred ceEEEEECCEEEEeC---CCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEEC------C--CcccccccCCCCC-
Confidence 368999999998884 799999998752 23555566667999999999992 1 1246889999986
Q ss_pred ccCceEEEe---ecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHHHH
Q 000981 88 VNGCLITTS---EGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSL 132 (1202)
Q Consensus 88 ~~g~~i~Tv---Egl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~ 132 (1202)
+|..|.|- |=+. ..-+-+.+-+...|--.|..|.-+-=+-+
T Consensus 71 -~gm~V~t~~~s~~v~---~~r~~~le~ll~~hp~dC~~C~~~g~C~L 114 (797)
T PRK07860 71 -DGMVVKTQLTSPVAD---KAQHGVMELLLINHPLDCPVCDKGGECPL 114 (797)
T ss_pred -CCcEEEeCCCCHHHH---HHHHHHHHHHHhcCCCCCCCCCCCCCcHH
Confidence 69999983 2111 11234556677889999999987643333
No 66
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=95.08 E-value=0.17 Score=62.98 Aligned_cols=158 Identities=14% Similarity=0.263 Sum_probs=91.4
Q ss_pred ceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHH
Q 000981 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (1202)
..+++|+|.+|+.++++.... .+...+++++|.+..-.- .....+||++++..+-.|..+...++++|++++.+|.+
T Consensus 98 ~~vv~P~S~eEV~~iV~~A~~-~g~~VrvvGsGhS~~~l~--~td~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~L~~ 174 (573)
T PLN02465 98 RRYHQPESLEELEDIVKEAHE-KGRRIRPVGSGLSPNGLA--FSREGMVNLALMDKVLEVDKEKKRVTVQAGARVQQVVE 174 (573)
T ss_pred CEEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCcCCCCee--eCCCEEEECcCCCCcEEEeCCCCEEEEccCCCHHHHHH
Confidence 468999999999998874321 244688888887542210 11235789888655444445556899999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCch-HHHHHhcCcEEEEEeCC-ceEEEeh
Q 000981 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDV-ATVLLGAGAMVNIMTGQ-KCEKLML 398 (1202)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~-~~~L~al~A~v~i~s~~-g~R~vpl 398 (1202)
.|.++. |+ +...++. +.+||||.|.++.-. +.. ...+-..=-.++|+..+ +..++.-
T Consensus 175 ~L~~~G-------------La--l~n~g~I---~~~TIGGaIstGtHG---tG~~~g~i~d~V~~l~lVta~G~vv~~s~ 233 (573)
T PLN02465 175 ALRPHG-------------LT--LQNYASI---REQQIGGFIQVGAHG---TGARIPPIDEQVVSMKLVTPAKGTIELSK 233 (573)
T ss_pred HHHHcC-------------CE--eccCCCC---CCeeecchhhCCCCC---cCCCcCcHhheEEEEEEEECCCCEEEECC
Confidence 877651 00 1112221 457999999766432 110 01111111123444443 3444443
Q ss_pred h---hhhc--CCCCCCCceEEEEEcCCCC
Q 000981 399 E---EFLE--RPPLDSRSILLSVEIPCWD 422 (1202)
Q Consensus 399 ~---dF~~--~~~l~~~eii~~I~iP~~~ 422 (1202)
+ |.|. ...+..-.||+++.|-..+
T Consensus 234 ~~~pdLF~aar~glG~lGVIteVTLql~P 262 (573)
T PLN02465 234 EDDPELFRLARCGLGGLGVVAEVTLQCVP 262 (573)
T ss_pred CCCHHHHhHhhccCCCCcEEEEEEEEEEe
Confidence 2 3343 3334434589988886643
No 67
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=95.07 E-value=0.038 Score=68.13 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=73.1
Q ss_pred eEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHH
Q 000981 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (1202)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (1202)
..++|.|.+|+.++++-... .+-...+.+|||++.--..-.....+||++++.....|..++..++++|++++.+|.+.
T Consensus 58 ~Vv~P~s~eeV~~iv~~a~~-~~ipv~~rG~Gt~~~gg~~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~ 136 (499)
T PRK11230 58 LVVLPKQMEQVQALLAVCHR-LRVPVVARGAGTGLSGGALPLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQA 136 (499)
T ss_pred EEEeeCCHHHHHHHHHHHHH-cCCeEEEECCCcCcCCCcccCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHH
Confidence 46899999999988773211 13345677889887221000124689999997655556666778999999999999998
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCcccccc
Q 000981 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ 366 (1202)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~ 366 (1202)
|.++... + ...++-...+||||||++..
T Consensus 137 l~~~Gl~--------~---------~~~p~s~~~~tvGG~ia~na 164 (499)
T PRK11230 137 AAPHGLY--------Y---------APDPSSQIACSIGGNVAENA 164 (499)
T ss_pred HHHcCCe--------e---------CCCCCccccceEcceeccCC
Confidence 8765211 1 12344456799999999764
No 68
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.80 E-value=0.26 Score=56.53 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=62.4
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEccc
Q 000981 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 312 (1202)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 312 (1202)
.+.+.+ ...|+.|.|++|+.++++.... ..-...++.||+-+.+-........+|-+.+ ++.|+..++.|++||+
T Consensus 26 t~~iGG~A~~~~~p~~~~eL~~~l~~~~~-~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~---~~~i~~~~~~v~a~AG 101 (302)
T PRK14650 26 TYKIGGISKLFLTPKTIKDAEHIFKAAIE-EKIKIFILGGGSNILINDEEEIDFPIIYTGH---LNKIEIHDNQIVAECG 101 (302)
T ss_pred eeeeCcEEEEEEecCCHHHHHHHHHHHHH-cCCCEEEEeceeEEEEECCCccceEEEEECC---cCcEEEeCCEEEEEeC
Confidence 466667 6778999999999988863321 1345778888887766443214456676543 6677777789999999
Q ss_pred CcHHHHHHHHHHH
Q 000981 313 VTISKAIEALKEE 325 (1202)
Q Consensus 313 vTl~~l~~~l~~~ 325 (1202)
+++.+|.....++
T Consensus 102 ~~~~~l~~~~~~~ 114 (302)
T PRK14650 102 TNFEDLCKFALQN 114 (302)
T ss_pred CcHHHHHHHHHHc
Confidence 9999999875443
No 69
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=94.74 E-value=0.083 Score=59.47 Aligned_cols=102 Identities=22% Similarity=0.328 Sum_probs=69.3
Q ss_pred CCCCcccEEEEEECCEEEEEccCCCCCcHHHHHhhccCCccccc----CC-CCCCCCccEEEEeccCCCcCCCCceeece
Q 000981 6 QHGGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL----GC-GEGGCGACVVLLSKYNPELDQLEDFTISS 80 (1202)
Q Consensus 6 ~~~~~~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~----gC-~~G~CGaCtV~~~~~~~~~~~~~~~~v~s 80 (1202)
|.++-+-.+.++|||+++++. ++++|||+..|+. |+.=... +. ..|.|.-|.|.|. | ..+.+.|
T Consensus 61 ~~~~~~~~~~I~IDGk~VeV~--~~G~TILeAAr~~-GI~IPtLCy~~~L~p~G~CRlClVEVe------G--~~~lv~A 129 (297)
T PTZ00305 61 QYAEHKPRAIMFVNKRPVEII--PQEENLLEVLERE-GIRVPKFCYHPILSVAGNCRMCLVQVD------G--TQNLVVS 129 (297)
T ss_pred chhccCCceEEEECCEEEEec--CCCChHHHHHHHc-CCCcCccccCCCCCCCCccceeEEEEC------C--CcCcccc
Confidence 345556678899999999883 5799999999964 4432211 22 3889999999992 1 1357999
Q ss_pred eccccccccCceEEEeecCCCCCCCcchHH----HHHHhcCCCCCCCCCh
Q 000981 81 CLTLLCSVNGCLITTSEGLGNSKTGFHPIH----QRFAGFHASQCGFCTP 126 (1202)
Q Consensus 81 Cl~~~~~~~g~~i~TvEgl~~~~~~~h~iq----~a~~~~~~~qCG~CtP 126 (1202)
|.+|+. +|..|.| + ...+...+ +-|...|-.-|.-|.-
T Consensus 130 C~tpV~--eGM~V~T-----~-Se~v~~~Rk~vLElLLs~Hp~DC~~C~k 171 (297)
T PTZ00305 130 CATVAL--PGMSIIT-----D-SRLVRDAREGNVELILINHPNDCPICEQ 171 (297)
T ss_pred cCCcCC--CCCEEEe-----C-CHHHHHHHHHHHHHHHhcCCCcCCcccC
Confidence 999986 6999998 2 23343333 3445556666666654
No 70
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=94.73 E-value=0.073 Score=64.85 Aligned_cols=110 Identities=19% Similarity=0.100 Sum_probs=72.2
Q ss_pred ceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceE--eeec---ccCCeeeeCCCcccccceeecCCcEEEcccCcH
Q 000981 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEV---EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTI 315 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv--~k~~---~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl 315 (1202)
.-.+.|.|.+|..++++-... .+-....-+|||+|.= .... .+..++||+.++..+..|. ++..+++.+++|+
T Consensus 40 ~AVV~P~SteEVa~IVklC~e-~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl 117 (564)
T PRK11183 40 LAVVFPGTLLELWRVLQACVA-ADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTL 117 (564)
T ss_pred CEEEecCCHHHHHHHHHHHHH-cCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcH
Confidence 357899999999988772210 1234556689998722 2211 2346889998876666666 4568999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCC
Q 000981 316 SKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRK 368 (1202)
Q Consensus 316 ~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~ 368 (1202)
.+|.+.++.... +|.. .++|.+|- +||||||++.+..
T Consensus 118 ~~LeeaLk~~Gl---------~p~s-----d~GSS~IG--asIGGnIAtNAGG 154 (564)
T PRK11183 118 YQLEKALKPLGR---------EPHS-----VIGSSCIG--ASVIGGICNNSGG 154 (564)
T ss_pred HHHHHHHHHhCC---------CCCC-----cccccccC--CCCccceEECCcc
Confidence 999999877522 1110 02333332 3899999988764
No 71
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=94.71 E-value=0.033 Score=67.23 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=70.2
Q ss_pred EecCCHHHHHHHHhhccCCCCCceeEEccCccceE--eeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHH
Q 000981 244 HSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (1202)
Q Consensus 244 ~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv--~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (1202)
++|.|.+|+.++++-... .+-...+.+|||++.- .. .....+||++++.....|..++..++++|++++.+|.+.
T Consensus 2 v~P~s~eev~~iv~~a~~-~~i~v~~~G~Gt~~~g~~~~--~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~ 78 (413)
T TIGR00387 2 VFPKNTEQVARILKLCHE-HRIPIVPRGAGTGLSGGALP--EEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQA 78 (413)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCcEEEECCCCCCCCCccC--CCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHH
Confidence 479999999988773211 2346788899998731 11 124578898775544344445678999999999999998
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
|.++-. .+| -.++-...+||||+|++...
T Consensus 79 l~~~gl--------~~~---------~~p~s~~~~tiGG~ia~na~ 107 (413)
T TIGR00387 79 VEEHNL--------FYP---------PDPSSQISSTIGGNIAENAG 107 (413)
T ss_pred HHHcCC--------eeC---------CCCcccccceehhhhhcCCC
Confidence 776521 111 13445567999999987553
No 72
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.65 E-value=0.18 Score=58.27 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=91.1
Q ss_pred CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHH
Q 000981 240 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 319 (1202)
Q Consensus 240 ~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 319 (1202)
..-|+.|.|.+|+.++++-... .+-...+++|||.+.+... .....+|++++ |+.|+.+++.+++||++++.+|.
T Consensus 37 A~~~v~p~~~edv~~~v~~a~~-~~ip~~vlGgGSNll~~d~-g~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~l~ 111 (307)
T PRK13906 37 ADFYITPTKNEEVQAVVKYAYQ-NEIPVTYLGNGSNIIIREG-GIRGIVISLLS---LDHIEVSDDAIIAGSGAAIIDVS 111 (307)
T ss_pred eEEEEEcCCHHHHHHHHHHHHH-cCCCEEEEcCceeEeecCC-CcceEEEEecC---ccceEEeCCEEEEECCCcHHHHH
Confidence 4568999999999988762211 2346788999998765332 23468899866 66777777899999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCc-eEEEeh
Q 000981 320 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEKLML 398 (1202)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g-~R~vpl 398 (1202)
+.+.+.. +..+ ...++. -|||||++++.... +-.++.=.+. .|++...+| .++++-
T Consensus 112 ~~~~~~G----------l~Gl----E~~~gI----PGtVGGav~mNaGa-yGg~i~D~l~----~v~vv~~~G~~~~~~~ 168 (307)
T PRK13906 112 RVARDYA----------LTGL----EFACGI----PGSIGGAVYMNAGA-YGGEVKDCID----YALCVNEQGSLIKLTT 168 (307)
T ss_pred HHHHHcC----------Cccc----hhhcCC----CccHhHHHHhhCCc-chhhhhhhee----EEEEEeCCCCEEEEEH
Confidence 8765541 1111 111222 36899998877652 1111111111 344444444 566666
Q ss_pred hh-hhc--CCCCCC-CceEEEEEcCC
Q 000981 399 EE-FLE--RPPLDS-RSILLSVEIPC 420 (1202)
Q Consensus 399 ~d-F~~--~~~l~~-~eii~~I~iP~ 420 (1202)
+| .|. ...++. +.||+++.+..
T Consensus 169 ~e~~f~YR~S~~~~~~~ii~~~~~~l 194 (307)
T PRK13906 169 KELELDYRNSIIQKEHLVVLEAAFTL 194 (307)
T ss_pred HHccCcCCcccCCCCCEEEEEEEEEE
Confidence 66 222 223332 23555554443
No 73
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=94.51 E-value=0.1 Score=59.65 Aligned_cols=139 Identities=15% Similarity=0.208 Sum_probs=83.9
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccC
Q 000981 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (1202)
Q Consensus 235 ~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (1202)
+.+.+ ...|+.|.|.+|+.++++-... .+-...+++|||.+.+... .....+|++.+... .+...++.+++||++
T Consensus 7 ~~igg~a~~~v~p~s~edl~~~l~~a~~-~~~p~~vlGgGSNll~~d~-~~~gvvi~l~~~~~--~~~~~~~~v~v~aG~ 82 (284)
T TIGR00179 7 YKIGGNARHIVCPESIEQLVNVLDNAKE-EDQPLLILGEGSNLLILDD-GRGGVIINLGKGID--IEDDEGEYVHVGGGE 82 (284)
T ss_pred eecCceeeEEEEeCCHHHHHHHHHHHHH-cCCCEEEEecceEEEEccC-CcCeEEEECCCCce--EEEecCCEEEEEcCC
Confidence 34445 5678999999999988762211 2456889999999876332 33457899876422 222335689999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCc-
Q 000981 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK- 392 (1202)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g- 392 (1202)
++.+|.+.+.+.. +. -+..+++.+ |||||++++.... +-.++.-.| -.|++...+|
T Consensus 83 ~~~~l~~~~~~~G----------l~----GlE~l~giP----GtvGGai~mNAGa-yG~~i~d~l----~~v~vv~~~G~ 139 (284)
T TIGR00179 83 NWHKLVKYALKNG----------LS----GLEFLAGIP----GTVGGAVIMNAGA-YGVEISEVL----VYATILLATGK 139 (284)
T ss_pred cHHHHHHHHHHCC----------Cc----ccccCCCCC----chHHHHHHHhccc-chhehhheE----EEEEEEeCCCC
Confidence 9999999865541 11 112223322 5899999886652 111111111 1344445555
Q ss_pred eEEEehhh
Q 000981 393 CEKLMLEE 400 (1202)
Q Consensus 393 ~R~vpl~d 400 (1202)
.++++-+|
T Consensus 140 ~~~~~~~~ 147 (284)
T TIGR00179 140 TEWLTNEQ 147 (284)
T ss_pred EEEEEHHH
Confidence 46677766
No 74
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=94.47 E-value=0.22 Score=62.06 Aligned_cols=108 Identities=10% Similarity=0.121 Sum_probs=67.2
Q ss_pred ceEEecCCHHHHHHHHhhccCCCCCceeEEcc-CccceEe-eecccC-CeeeeCCCcccccceeecCCcEEEcccCcHHH
Q 000981 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAG-NTGMGYY-KEVEHY-DKYIDIRYIPELSVIRRDQTGIEIGATVTISK 317 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaG-gT~lgv~-k~~~~~-~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 317 (1202)
...++|+|.+|+.++++.... .+...++++| |.++.-. ...... ..+||++++..+-.|..+...++++|++++.+
T Consensus 33 ~~vv~P~s~eeV~~iV~~A~~-~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~ 111 (557)
T TIGR01677 33 ANVAYPKTEAELVSVVAAATA-AGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLRE 111 (557)
T ss_pred CEEEecCCHHHHHHHHHHHHH-CCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHHH
Confidence 357899999999998874321 1334666654 3332111 110112 38999998665555555567899999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 318 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 318 l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
|.+.|.++.- .++. . +.+- ..||||.|.++.-
T Consensus 112 L~~~L~~~Gl--------al~~-------~--~~~~-~~TVGGaiatGth 143 (557)
T TIGR01677 112 LIVEAEKAGL--------ALPY-------A--PYWW-GLTVGGMMGTGAH 143 (557)
T ss_pred HHHHHHHcCC--------Eecc-------C--CCCC-CeEeeEhhhCCCC
Confidence 9998776411 1111 1 1122 2599999987654
No 75
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=94.14 E-value=0.09 Score=66.64 Aligned_cols=93 Identities=24% Similarity=0.404 Sum_probs=67.9
Q ss_pred EEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeccCCCcCCCCceeeceecccccccc
Q 000981 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVN 89 (1202)
Q Consensus 16 ~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~ 89 (1202)
|+|||+++++. +++||++.+++. |..= -.=|. .|.|.-|.|.+. ++ ..+.+.||.+|+. +
T Consensus 1 ~~idg~~~~~~---~g~~il~a~~~~-gi~i-p~~C~~~~l~~~g~Cr~C~v~v~------g~-~~~~~~aC~~~~~--~ 66 (603)
T TIGR01973 1 IFIDGKELEVP---KGTTVLQACLSA-GIEI-PRFCYHEKLSIAGNCRMCLVEVE------KF-PDKPVASCATPVT--D 66 (603)
T ss_pred CEECCEEEEeC---CCCHHHHHHHHc-CCCc-cccCCCCCCCCCCccccCEEEEC------CC-CCCcccccCCCCC--C
Confidence 58999998884 789999999863 6532 24564 899999999992 10 0027999999976 6
Q ss_pred CceEEEeecCCCCCCCcch----HHHHHHhcCCCCCCCCChHH
Q 000981 90 GCLITTSEGLGNSKTGFHP----IHQRFAGFHASQCGFCTPGM 128 (1202)
Q Consensus 90 g~~i~TvEgl~~~~~~~h~----iq~a~~~~~~~qCG~CtPG~ 128 (1202)
|..|.|- ....+. +.+.|...|---|..|.-+-
T Consensus 67 gm~v~t~------~~~~~~~r~~~~e~ll~~h~~dC~~C~~~g 103 (603)
T TIGR01973 67 GMKISTN------SEKVKKAREGVMEFLLINHPLDCPICDQGG 103 (603)
T ss_pred CCEEEeC------CHHHHHHHHHHHHHHHhcCCCCCCcCCCCC
Confidence 9999981 233443 44556677888899998764
No 76
>PLN03136 Ferredoxin; Provisional
Probab=94.13 E-value=0.084 Score=54.16 Aligned_cols=49 Identities=18% Similarity=0.366 Sum_probs=37.8
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
+|.|.-++..++++ ++++.+|||.+++. |+ ....+|+.|.||.|.+-+.
T Consensus 56 ~V~l~~~~~~~~~~-~~~g~tILdAa~~~-Gi-~lp~sCr~G~CGtC~~~l~ 104 (148)
T PLN03136 56 KVKFITPEGEQEVE-CEEDVYVLDAAEEA-GI-DLPYSCRAGSCSSCAGKVV 104 (148)
T ss_pred EEEEecCCCcEEEE-eCCCCcHHHHHHHc-CC-CCCcCCCCccCCCCEEEEe
Confidence 35554355445665 67899999999875 74 4889999999999999884
No 77
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=94.11 E-value=0.13 Score=50.72 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=56.2
Q ss_pred EEEE-EECCEEEEEccCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEe-cc--CC---C----------cCCCC
Q 000981 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLS-KY--NP---E----------LDQLE 74 (1202)
Q Consensus 13 ~i~~-~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~-~G~CGaCtV~~~-~~--~~---~----------~~~~~ 74 (1202)
+|+| ...|++.+++ +.+++||++.+++. |+. .-..|+ .|.||.|-|.|. .. +. . .....
T Consensus 2 ~V~fi~~~G~~~~v~-~~~G~tLl~a~~~~-gi~-i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~ 78 (117)
T PLN02593 2 SVTFVDKDGEERTVK-APVGMSLLEAAHEN-DIE-LEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLT 78 (117)
T ss_pred EEEEEcCCCCEEEEE-ECCCCcHHHHHHHc-CCC-CCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCC
Confidence 5777 4789888887 68999999999974 774 777999 599999999992 11 00 0 11122
Q ss_pred ceeeceecccccc-ccCceEEEe
Q 000981 75 DFTISSCLTLLCS-VNGCLITTS 96 (1202)
Q Consensus 75 ~~~v~sCl~~~~~-~~g~~i~Tv 96 (1202)
.....||.+.+.. ++|..|..-
T Consensus 79 ~~sRLaCQ~~v~~~~~~~~v~ip 101 (117)
T PLN02593 79 ETSRLGCQVIAKPELDGMRLALP 101 (117)
T ss_pred CCeEecceeEeecCCCCEEEEcC
Confidence 3445889887653 567666643
No 78
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=94.08 E-value=0.11 Score=52.93 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=57.8
Q ss_pred cEEEEEE-CCEEEEEccCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEecc-----CC---------CcC-CCC
Q 000981 12 HSVVFAV-NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSKY-----NP---------ELD-QLE 74 (1202)
Q Consensus 12 ~~i~~~v-Ng~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~-~G~CGaCtV~~~~~-----~~---------~~~-~~~ 74 (1202)
.+|+|+= ||++++++ +.+..+|++.|++. +.-+.-.-|+ .|.||-|-|.|.+- .+ ... ...
T Consensus 36 v~I~~~~~dG~~~~v~-~~~G~sLLeal~~~-~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~ 113 (143)
T PTZ00490 36 VKVCVKKRDGTHCDVE-VPVGMSLMHALRDV-AKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVK 113 (143)
T ss_pred EEEEEEcCCCCEEEEE-ECCCccHHHHHHHc-CCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCC
Confidence 3444432 37888887 79999999999984 3345556788 99999999999651 00 001 223
Q ss_pred ceeeceecccccc-ccCceEEEeec
Q 000981 75 DFTISSCLTLLCS-VNGCLITTSEG 98 (1202)
Q Consensus 75 ~~~v~sCl~~~~~-~~g~~i~TvEg 98 (1202)
.....||.+.+.. ++|..|..-|-
T Consensus 114 ~gsRLaCQi~v~~~ldgl~V~vp~~ 138 (143)
T PTZ00490 114 ETSRLACQVDLTPEMDGLEVELPSY 138 (143)
T ss_pred CCcEEeeeEEEecCCCCEEEEeCcc
Confidence 3456899998864 67888776543
No 79
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=94.01 E-value=0.068 Score=69.78 Aligned_cols=102 Identities=20% Similarity=0.299 Sum_probs=73.4
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeccCCCcCCCCceeeceeccccc
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 86 (1202)
+|+|+|||+++++. +++||++.++.. |..-. .=|- .|.|.-|.|.|.. ..+.+.||.+|+.
T Consensus 1 m~~~~idg~~~~~~---~g~~il~a~~~~-g~~ip-~~c~~~~~~~~~~C~~C~v~v~~--------~~~~~~aC~~~~~ 67 (776)
T PRK09129 1 MVEIEIDGKKVEVP---EGSMVIEAADKA-GIYIP-RFCYHKKLSIAANCRMCLVEVEK--------APKPLPACATPVT 67 (776)
T ss_pred CeEEEECCEEEEeC---CCCHHHHHHHHc-CCCCC-cccCCCCCCCCCCcceeEEEECC--------CCCcCcccCCCCC
Confidence 48999999999884 799999999863 43322 1344 5899999999921 1245889999987
Q ss_pred cccCceEEEeecCCCCCCCc----chHHHHHHhcCCCCCCCCChHHHHHHHHH
Q 000981 87 SVNGCLITTSEGLGNSKTGF----HPIHQRFAGFHASQCGFCTPGMCMSLFSA 135 (1202)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~----h~iq~a~~~~~~~qCG~CtPG~vm~~~~l 135 (1202)
+|..|.|- ...+ .-+-+.+...|--.|..|.-+--+-+-.+
T Consensus 68 --~gm~v~t~------~~~~~~~r~~~l~~ll~~h~~~C~~c~~~g~C~Lq~~ 112 (776)
T PRK09129 68 --DGMKVFTR------SEKALKAQKSVMEFLLINHPLDCPICDQGGECQLQDL 112 (776)
T ss_pred --CCCEEEcC------CHHHHHHHHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Confidence 69999982 1223 23455667789999999998775544443
No 80
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=93.96 E-value=0.099 Score=65.13 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=72.7
Q ss_pred eEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHH
Q 000981 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (1202)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (1202)
..++|+|.+|+.++++-... .+-.....+|||++.=.--......+||++++..+..|..++..++++|++++.+|.+.
T Consensus 136 ~Vv~P~s~eeV~~ivk~a~~-~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~ 214 (555)
T PLN02805 136 VVVFPRSEEEVSKIVKSCNK-YKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEY 214 (555)
T ss_pred EEEEcCCHHHHHHHHHHHHH-CCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHH
Confidence 57889999999988763211 13457788999987421000123588999987766666667789999999999999999
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 322 LKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 322 l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
|.++.- .+|.. +. ..+||||+|++..-
T Consensus 215 L~~~Gl--------~~p~~---------p~--~~~TIGG~ia~n~~ 241 (555)
T PLN02805 215 LEPYGL--------FFPLD---------PG--PGATIGGMCATRCS 241 (555)
T ss_pred HHHcCC--------EeCCC---------Cc--cccChhhHhhCCCc
Confidence 876521 12211 11 34799999987754
No 81
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=93.76 E-value=0.085 Score=62.00 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=40.1
Q ss_pred EEEEE---CCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 14 VVFAV---NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 14 i~~~v---Ng~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
.+++| ||+.+.++ +.++.|||+.|++. |+ ....+|++|.||.|.|-+.
T Consensus 3 ~~v~~~~~~~~~~~~~-~~~g~tlL~a~~~~-g~-~~p~~C~~G~Cg~C~~~~~ 53 (340)
T PRK11872 3 HKVALSFADGKTLFFP-VGKDELLLDAALRN-GI-NLPLDCREGVCGTCQGRCE 53 (340)
T ss_pred eEEEEEecCCcEEEEE-eCCCCcHHHHHHHc-CC-CCcCCCCCeECCCCEEEEE
Confidence 34566 99998886 68999999999864 75 6788999999999999883
No 82
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=93.68 E-value=0.15 Score=65.39 Aligned_cols=94 Identities=22% Similarity=0.341 Sum_probs=65.5
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeccCCCcCCCCceeeceeccccc
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 86 (1202)
+|+++|||+++++. +++|+|+..|. .|.. +-.=|- .|.|.-|.|.|... ..+.+.||.+|+.
T Consensus 1 m~~~~Idg~~v~v~---~g~til~a~~~-~gi~-IP~lCy~~~l~~~g~Cr~ClVev~~~-------~~~~~~sC~~~v~ 68 (687)
T PRK09130 1 MVKLKVDGKEIEVP---DGYTLLQACEA-AGAE-IPRFCYHERLSIAGNCRMCLVEVKGG-------PPKPVASCAMPVG 68 (687)
T ss_pred CeEEEECCEEEEeC---CCCHHHHHHHH-cCCC-cCcccCCCCCCCCCCCCCCEEEECCC-------CCCcccccCCCCC
Confidence 47899999988874 79999999985 3655 333454 79999999999310 0358999999976
Q ss_pred cccCceEEEeecCCCCCCCcchHH----HHHHhcCCCCCCCCCh
Q 000981 87 SVNGCLITTSEGLGNSKTGFHPIH----QRFAGFHASQCGFCTP 126 (1202)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq----~a~~~~~~~qCG~CtP 126 (1202)
+|..|.| . .......+ +-+...|---|..|.-
T Consensus 69 --~gm~v~T----~--s~~v~~~r~~~le~ll~~Hp~dC~~C~~ 104 (687)
T PRK09130 69 --EGMVIFT----N--TPMVKKAREGVMEFLLINHPLDCPICDQ 104 (687)
T ss_pred --CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 6999998 2 23333333 3444556555666653
No 83
>PTZ00038 ferredoxin; Provisional
Probab=93.42 E-value=0.14 Score=54.59 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=37.8
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
..|+|.++....+++ +.++++||+.+++. |+ ....+|+.|.||.|.|-+.
T Consensus 96 ~~Vt~~~~~g~~~~~-v~~geTILdAae~a-GI-~lp~sCr~G~CGtCkvrV~ 145 (191)
T PTZ00038 96 YNITLQTPDGEKVIE-CDEDEYILDAAERQ-GV-ELPYSCRGGSCSTCAAKLL 145 (191)
T ss_pred EEEEEEeCCCcEEEE-eCCCCcHHHHHHHc-CC-CCCcCCCCccCCCCEeEEe
Confidence 346665332234554 57899999999864 75 7888999999999999884
No 84
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=92.96 E-value=0.14 Score=67.46 Aligned_cols=106 Identities=21% Similarity=0.338 Sum_probs=73.7
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeccCCCcCCCCceeeceeccccc
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 86 (1202)
+++|+|||+.+++ .+++|||+.++.. |+. +-..|. .|.|+.|.|.|..-.. +-..+.+.||.+|+.
T Consensus 1 ~~~i~idg~~~~~---~~g~til~a~~~~-gi~-ip~~C~~~~~~~~G~C~~C~v~v~~g~~---~~~~~~~~aC~~~v~ 72 (847)
T PRK08166 1 MATIHVDGKEYEV---NGADNLLEACLSL-GID-IPYFCWHPALGSVGACRQCAVKQYQNPE---DTRGRLVMSCMTPAT 72 (847)
T ss_pred CeEEEECCEEEEe---CCCCHHHHHHHHc-CCC-CCccccCCCCCCCCccCCCeEEEeecCc---cCCCCcccCcCCCCC
Confidence 4789999999777 4799999999853 432 345897 5999999999942110 112457889999876
Q ss_pred cccCceEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChHHHH
Q 000981 87 SVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCM 130 (1202)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm 130 (1202)
+|..|.|-.--- ...-.-+.+-|...|-..|..|.-|-=+
T Consensus 73 --~gm~v~t~~~~~--~~~r~~~~e~ll~~hp~dc~~c~~~g~c 112 (847)
T PRK08166 73 --DGTFISIDDPEA--KAFRASVVEWLMTNHPHDCPVCEEGGNC 112 (847)
T ss_pred --CCCEEEeCCHHH--HHHHHHHHHHHHhcCCCCCCccCCCCCc
Confidence 599998832110 1112346677788999999999866433
No 85
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=92.91 E-value=0.21 Score=60.49 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=70.7
Q ss_pred ceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHH
Q 000981 241 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 320 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 320 (1202)
...++|+|.+|+.++++.. ....++++||.+.+-.- .....+||++++..+..+..+...++++|++++.+|.+
T Consensus 13 ~~v~~P~s~~ev~~~v~~a----~~~v~~~G~Ghs~~~~~--~~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~l~~ 86 (419)
T TIGR01679 13 SAIVRPTDEGELADVIAQA----AKPVRAVGSGHSFTDLA--CTDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGALGP 86 (419)
T ss_pred CeEECCCCHHHHHHHHHHh----CCCEEEEeCCCCCCCcc--cCCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHHHHH
Confidence 3578999999999998853 23588888887654311 12358999988654444455578999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 321 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
.|.++.. .+| ..++ + +..||||.|++..-
T Consensus 87 ~L~~~G~--------~l~-------~~~~--~-~~~tvGG~ia~~~h 115 (419)
T TIGR01679 87 QLAQRGL--------GLE-------NQGD--I-DPQSIGGALGTATH 115 (419)
T ss_pred HHHHcCC--------ccc-------cCCC--C-CCceeccceecCCC
Confidence 8776511 111 1122 2 34799999987544
No 86
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=92.66 E-value=0.2 Score=59.04 Aligned_cols=52 Identities=23% Similarity=0.426 Sum_probs=43.3
Q ss_pred ccEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 11 ~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
...|+|...|+.+++..++++.|||+.|.+. |+ -+..+|+.|.||.|.|-+.
T Consensus 262 ~~~v~~~~~~~~~~~~~~~~~~slL~~~~~~-gi-~~~~~C~~G~Cg~C~~~~~ 313 (352)
T TIGR02160 262 VSKVTVTLDGRSTETSSLSRDESVLDAALRA-RP-DLPFACKGGVCGTCRAKVL 313 (352)
T ss_pred ceEEEEEECCceEEEEecCCCCcHHHHHHHc-CC-CCcCCCCCccCCCCEEEEe
Confidence 3578999999988643378999999999754 75 6888999999999999984
No 87
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=91.37 E-value=1.2 Score=51.87 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=82.0
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceee---cCC--cE
Q 000981 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRR---DQT--GI 307 (1202)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~---~~~--~l 307 (1202)
.+.+.+ ...|+.|.|.+|+.++++-... ..-...++.||+-+.+-. ..+..+|-+ + ++.++. +++ .+
T Consensus 14 t~riGG~A~~~~~p~~~~el~~~~~~~~~-~~~p~~vlG~GSNlLv~D--~~~g~vI~~-~---~~~~~~~~~~~~~~~v 86 (334)
T PRK00046 14 TFGIDARARHLVEAESEEQLLEALADARA-AGLPVLVLGGGSNVLFTE--DFDGTVLLN-R---IKGIEVLSEDDDAWYL 86 (334)
T ss_pred eeccCcEEeEEEeeCCHHHHHHHHHHHHH-cCCCEEEEeceEEEEECC--CCCEEEEEe-c---CCceEEEecCCCeEEE
Confidence 355666 6678999999999998863211 134577888888887643 355666765 3 444444 333 69
Q ss_pred EEcccCcHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEE
Q 000981 308 EIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNI 387 (1202)
Q Consensus 308 ~IGA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i 387 (1202)
++||++.+.+|.....++. +.. +.++++.+ ||+||-+++.... +-.++.=++. +|++
T Consensus 87 ~a~AG~~~~~l~~~~~~~g----------l~G----lE~l~gIP----GTVGGAv~mNaGa-yG~ei~d~l~----~V~v 143 (334)
T PRK00046 87 HVGAGENWHDLVLWTLQQG----------MPG----LENLALIP----GTVGAAPIQNIGA-YGVELKDVCD----YVEA 143 (334)
T ss_pred EEEcCCcHHHHHHHHHHcC----------chh----hHHhcCCC----cchhHHHHhcCCc-CcccHheeEE----EEEE
Confidence 9999999999998755441 222 23334433 6788876655441 0012211111 4555
Q ss_pred EeCC-c-eEEEehhh
Q 000981 388 MTGQ-K-CEKLMLEE 400 (1202)
Q Consensus 388 ~s~~-g-~R~vpl~d 400 (1202)
.... | .++++-+|
T Consensus 144 ~d~~~g~~~~~~~~e 158 (334)
T PRK00046 144 LDLATGEFVRLSAAE 158 (334)
T ss_pred EECCCCcEEEEEHHH
Confidence 5543 3 56677766
No 88
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=91.04 E-value=0.27 Score=57.63 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=36.0
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
+++.+++...++. ++++.|||+.|++ .|+ -+..+|+.|.||.|.|-+.
T Consensus 249 ~~v~~~~~~~~~~-~~~~~~lL~~~~~-~gi-~~~~~C~~G~Cg~C~~~~~ 296 (332)
T PRK10684 249 LTFTKLQPAREFY-APVGTTLLEALES-NKV-PVVAACRAGVCGCCKTKVV 296 (332)
T ss_pred eEEEEecCCEEEE-eCCCChHHHHHHH-cCC-CccCCCCCcCCCCCEEEEe
Confidence 3444444334444 4689999999975 475 7889999999999999983
No 89
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=90.97 E-value=0.89 Score=53.72 Aligned_cols=86 Identities=8% Similarity=0.061 Sum_probs=61.8
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeec--CCcEEEc
Q 000981 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRD--QTGIEIG 310 (1202)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~--~~~l~IG 310 (1202)
.+.+.+ ...|+.|.|.+|+.++++-... .+-...++.||+.+.+-.+ ..+..+|+++. +.|+++ ++.|++|
T Consensus 26 t~~iGg~A~~~~~p~s~edl~~~l~~a~~-~~~p~~vlGgGSNlLv~D~-g~~GvVI~l~~----~~i~i~~~~~~v~vg 99 (363)
T PRK13903 26 TLRVGGPARRLVTCTSTEELVAAVRELDA-AGEPLLVLGGGSNLVIADD-GFDGTVVRVAT----RGVTVDCGGGLVRAE 99 (363)
T ss_pred EeecCccceEEEEeCCHHHHHHHHHHHHH-CCCCEEEEeCCeeEeECCC-CccEEEEEeCC----CcEEEeCCCCEEEEE
Confidence 455666 5678899999999998763211 2346888999998865332 35568888863 455555 6789999
Q ss_pred ccCcHHHHHHHHHHH
Q 000981 311 ATVTISKAIEALKEE 325 (1202)
Q Consensus 311 A~vTl~~l~~~l~~~ 325 (1202)
|++++.++.....++
T Consensus 100 AG~~~~~l~~~a~~~ 114 (363)
T PRK13903 100 AGAVWDDVVARTVEA 114 (363)
T ss_pred cCCCHHHHHHHHHHc
Confidence 999999999875543
No 90
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=90.85 E-value=0.25 Score=57.93 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=38.1
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEE
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLL 63 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~ 63 (1202)
..|+|.-+|+.+++ +++.|||+.|++. |+. ...+|+.|.||.|.|-+
T Consensus 3 ~~v~~~~~~~~~~~---~~g~tlL~a~~~~-gi~-~~~~C~~G~Cg~C~~~~ 49 (339)
T PRK07609 3 FQVTLQPSGRQFTA---EPDETILDAALRQ-GIH-LPYGCKNGACGSCKGRL 49 (339)
T ss_pred EEEEEecCCeEEEe---CCCCcHHHHHHHc-CCC-CCCCCCCeECCCCEEEE
Confidence 35777777766554 5799999999865 754 88999999999999977
No 91
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=90.63 E-value=1.1 Score=51.53 Aligned_cols=88 Identities=10% Similarity=0.051 Sum_probs=61.3
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCC--cEEEc
Q 000981 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQT--GIEIG 310 (1202)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~--~l~IG 310 (1202)
.+.+.+ ...|+.|+|.+|+.++++-... .+-...++.||+-+.+... .....+|+++.- .+ .+..+++ .+++|
T Consensus 14 t~~iGg~a~~~v~p~~~~dl~~~l~~~~~-~~ip~~vlG~GSNlL~~d~-g~~GvVI~l~~~-~~-~i~~~~~~~~v~v~ 89 (295)
T PRK14649 14 SWRIGGPARYFVEPTTPDEAIAAAAWAEQ-RQLPLFWLGGGSNLLVRDE-GFDGLVARYRGQ-RW-ELHEHGDTAEVWVE 89 (295)
T ss_pred EeeeCceeeEEEEcCCHHHHHHHHHHHHH-CCCCEEEEecceeEEEeCC-CcCeEEEEecCC-Cc-EEEEeCCcEEEEEE
Confidence 456666 6678889999999988763221 2346788888888766433 345678887642 23 4444444 79999
Q ss_pred ccCcHHHHHHHHHHH
Q 000981 311 ATVTISKAIEALKEE 325 (1202)
Q Consensus 311 A~vTl~~l~~~l~~~ 325 (1202)
|++++.++...+.++
T Consensus 90 AG~~~~~l~~~~~~~ 104 (295)
T PRK14649 90 AGAPMAGTARRLAAQ 104 (295)
T ss_pred cCCcHHHHHHHHHHc
Confidence 999999999875544
No 92
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=90.44 E-value=0.41 Score=46.13 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=37.3
Q ss_pred EEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEecc
Q 000981 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLSKY 66 (1202)
Q Consensus 16 ~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~~~ 66 (1202)
...+|+......++.+.+||+.+.+. |+. .-.+|+.|.||+|.|.|.+-
T Consensus 7 v~~~~~~~~~~~~~~g~tiLe~a~~~-gi~-i~~~C~~g~C~TC~v~v~~G 55 (102)
T COG0633 7 VTIDGEGDVTEAVNEGETLLEAAERN-GIP-IEYACRGGACGTCRVKVLEG 55 (102)
T ss_pred EeccCCcceEEeccCCcHHHHHHHHC-CCc-ceecCCCCccCccEEEEecC
Confidence 34555445554456689999999864 666 77999999999999999643
No 93
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=90.44 E-value=0.35 Score=56.95 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHHHHHHhhh
Q 000981 249 VQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKE 328 (1202)
Q Consensus 249 l~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~ 328 (1202)
++|+.++++.... .+-..++.+|||.... .......+||++++.....+..++..++++|++++.+|.+.|.++-..
T Consensus 4 ~~ev~~~v~~A~~-~~~~v~~~GgGt~~~~--g~~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~ 80 (352)
T PRK11282 4 SAALLERVRQAAA-DGTPLRIRGGGSKDFY--GRALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQM 80 (352)
T ss_pred HHHHHHHHHHHHH-CCCeEEEECCCCCCCC--CCCCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 3455554442211 2456888899985322 101124589999876555556667789999999999999988765211
Q ss_pred hhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 329 FHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 329 ~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
+|. --+.....+||||+|++...
T Consensus 81 --------lp~--------~p~~~~~~~TIGG~iatg~~ 103 (352)
T PRK11282 81 --------LPF--------EPPHFGGGATLGGMVAAGLS 103 (352)
T ss_pred --------eCC--------CCCCcCCCcEehhHHhcCCC
Confidence 110 00112335899999997764
No 94
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=90.36 E-value=0.38 Score=47.02 Aligned_cols=42 Identities=19% Similarity=0.514 Sum_probs=32.7
Q ss_pred CCEEEEEccCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEec
Q 000981 19 NGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSK 65 (1202)
Q Consensus 19 Ng~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~-~G~CGaCtV~~~~ 65 (1202)
+|+.++ +.++++||+.|++. |+. +-..|+ .|.||.|-|.|..
T Consensus 14 ~~~~~~---~~~g~tLL~a~~~~-gi~-i~~~CgG~G~CgtC~v~V~~ 56 (110)
T TIGR02007 14 EGAVVE---AKPGETILDVALDN-GIE-IEHACEKSCACTTCHCIVRE 56 (110)
T ss_pred CCeEEE---ECCCChHHHHHHHc-CCC-ccccCCCCceeCCCEEEEee
Confidence 355444 45899999999864 765 778998 7999999998844
No 95
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=90.16 E-value=7.8 Score=50.66 Aligned_cols=191 Identities=21% Similarity=0.176 Sum_probs=113.9
Q ss_pred CcCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE-------cccCCCCCCCCCCccHHHHH
Q 000981 785 YMETQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT-------RRVGGAFGGKAIKAMPVATA 852 (1202)
Q Consensus 785 ~mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~-------~~vGGgFGgK~~~~~~~~~~ 852 (1202)
.++..++.+..+.||.++|++++.-. ..+.+.+|+.||+|.++|+|+. +.-+|.||++.+.....++.
T Consensus 457 ~~~~~~a~v~i~~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~aSr~t~~~g~Av~ 536 (759)
T PRK09970 457 GLEIAGARLLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAYASRQSYVAGPAIR 536 (759)
T ss_pred CCCcceEEEEEccCceEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCchhhhHHHHHHHHH
Confidence 36677888888889999999998544 5578899999999999999984 35578888886533222111
Q ss_pred H----------HHHHHhcCCCEE---E-----EeC----h---HHHHhh---c-----------C-----C-CCce-EEE
Q 000981 853 C----------ALAAYKLCRPVR---I-----YVK----R---KTDMIM---V-----------G-----G-RHPM-KIT 886 (1202)
Q Consensus 853 a----------AlaA~~~gRPVk---l-----~~t----R---~edm~~---~-----------~-----~-R~~~-~~~ 886 (1202)
- .++|..++-++. + ... + -.++.. . + . -.++ -.-
T Consensus 537 ~Aa~~lr~~l~~~aa~~l~~~~~~l~~~~G~v~~~~~~~~~~~~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 616 (759)
T PRK09970 537 KAALELKEKILAHAAVMLHQSAMNLDIIDGHIVVKRPGEPLMSLEELAMDAYYHPERGGQITAESSIKTTTNPPAFGCTF 616 (759)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHEEEECCEEEECCCCCccccHHHHHHHhhccccCCCceeEEEEecCCCCCCceEEEE
Confidence 1 112333332220 1 000 0 000100 0 0 0 0122 234
Q ss_pred EEEEeC-CCCcEEEEEEEEEeeCCCCCCC----Ccc-------hhhhc-----c---------ccCCCCccCcE----EE
Q 000981 887 YSVGFK-SNGKITALQLNILIDAGLSPDV----SPI-------MPSNM-----I---------GALKKYDWGAL----HF 936 (1202)
Q Consensus 887 ~k~g~~-~dG~i~a~~~~~~~d~Ga~~~~----s~~-------~~~~~-----~---------~~~~~Y~ipn~----~~ 936 (1202)
.++-+| ..|++.=.++....|.|--.+- +++ +..++ . ....-|.+|.. .+
T Consensus 617 aeVeVD~~TG~v~v~~~~~~~D~G~~iNP~~v~gQi~Gg~~qGiG~aL~E~~~~d~~~G~~~~~~~~dY~ip~~~d~P~i 696 (759)
T PRK09970 617 VDVEVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDEKTGVVRNPNLLDYKLPTMMDLPQL 696 (759)
T ss_pred EEEEEeCCCCeEEEEEEEEEEEcCcccCHHHHHHHHHhHHHHHHHHHhcceeEEcCCCCeECCCChhhccCCCcccCCCe
Confidence 567778 5799999999999999977542 110 00011 0 11123555433 35
Q ss_pred EEEEeecCCCCCCc--cCCCChhHHHHHHHHHHHHHHHHcCC
Q 000981 937 DIKVCRTNLPSRSA--MRAPGEVQGSFIAEAVIEHVASTLSM 976 (1202)
Q Consensus 937 ~~~~v~TN~~~~ga--~RG~G~~q~~fa~E~~mDelA~~lg~ 976 (1202)
+...+.++.+ .+. -+|.|.+...-+.=.+.+.+++.+|.
T Consensus 697 ~v~~ve~~~~-~~p~GaKgvGE~~~~~~~~AIanAi~~A~G~ 737 (759)
T PRK09970 697 ESAFVEIYEP-QSAYGHKSLGEPPIISPAPAIRNAVLMATGV 737 (759)
T ss_pred EEEEEecCCC-CCCCCCcccCCCcccchHHHHHHHHHHhhCC
Confidence 6666677644 344 67788888777777778888888874
No 96
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=89.35 E-value=0.41 Score=57.65 Aligned_cols=49 Identities=27% Similarity=0.550 Sum_probs=39.0
Q ss_pred EEEEEECC-EEEEEccCCCCCcHHHHHhhccCCcccccCCCC-CCCCccEEEEe
Q 000981 13 SVVFAVNG-EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGE-GGCGACVVLLS 64 (1202)
Q Consensus 13 ~i~~~vNg-~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~-G~CGaCtV~~~ 64 (1202)
.|++++|+ +..+++ +.+++|||+.++.. |+. ....|+. |.||.|.|.+.
T Consensus 31 ~v~v~~~~~~~~~~~-~~~g~tlL~a~~~~-gi~-i~~~C~g~G~Cg~C~v~v~ 81 (405)
T TIGR01941 31 DITIGINDDEEKSIT-VPAGGKLLNTLASN-GIF-ISSACGGGGTCGQCRVRVV 81 (405)
T ss_pred cEEEEEcCCCceEEE-ECCCChHHHHHHHc-CCC-CcccCCCccEeCCCEEEEc
Confidence 48899985 445565 57899999999865 764 7778995 89999999984
No 97
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=88.22 E-value=0.55 Score=56.70 Aligned_cols=51 Identities=27% Similarity=0.546 Sum_probs=40.2
Q ss_pred ccEEEEEECCE-EEEEccCCCCCcHHHHHhhccCCcccccCCCC-CCCCccEEEEe
Q 000981 11 RHSVVFAVNGE-KFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGE-GGCGACVVLLS 64 (1202)
Q Consensus 11 ~~~i~~~vNg~-~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~-G~CGaCtV~~~ 64 (1202)
..++++++||. ..+++ +.+++|||+.++.. |+. ....|+. |.||.|.|-+.
T Consensus 33 ~~~~~i~~~~~~~~~~~-~~~g~tLL~a~~~~-gi~-i~~~C~g~G~CgtC~v~v~ 85 (409)
T PRK05464 33 SGDVTIKINGDPEKTIT-VPAGGKLLGALASN-GIF-LSSACGGGGSCGQCRVKVK 85 (409)
T ss_pred CccEEEEEcCCCcEEEE-ECCCchHHHHHHHc-CCC-cccCCCCccEeCCCEEEEe
Confidence 34688889983 45565 57899999999864 774 6778995 99999999884
No 98
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.98 E-value=5.2 Score=45.65 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=93.3
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceee--cCCcEEEcc
Q 000981 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRR--DQTGIEIGA 311 (1202)
Q Consensus 235 ~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~--~~~~l~IGA 311 (1202)
..+.+ ...|+.|.+.+|+.++++.... ..-...++.||+-+.+..+ ....++|.+.. +..+.. +++.|++||
T Consensus 15 friGg~A~~~~~~~~~e~l~~~~~~~~~-~~~p~~ilG~GSNlLv~d~-g~~gvvi~~~~---~~~~~~~~~~~~i~a~a 89 (291)
T COG0812 15 FRIGGPAEVLVEPRDIEELKAALKYAKA-EDLPVLILGGGSNLLVRDG-GIGGVVIKLGK---LNFIEIEGDDGLIEAGA 89 (291)
T ss_pred EecCcceeEEEecCCHHHHHHHHHhhhh-cCCCEEEEecCceEEEecC-CCceEEEEccc---ccceeeeccCCeEEEcc
Confidence 45555 6789999999999998875432 2446778888887766544 23344555544 333333 334999999
Q ss_pred cCcHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC-CCC-CCchHHHHHhcCcEEEEEe
Q 000981 312 TVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR-KHF-PSDVATVLLGAGAMVNIMT 389 (1202)
Q Consensus 312 ~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p-~~~-~SD~~~~L~al~A~v~i~s 389 (1202)
++.+.+|.....++. +..|-- .+.. =||+||-+.+... .+. -+|.+. +|.+..
T Consensus 90 G~~~~~l~~~~~~~g----------l~GlE~----l~gI----PGsvGgav~mNaGAyG~Ei~d~~~-------~v~~ld 144 (291)
T COG0812 90 GAPWHDLVRFALENG----------LSGLEF----LAGI----PGSVGGAVIMNAGAYGVEISDVLV-------SVEVLD 144 (291)
T ss_pred CCcHHHHHHHHHHcC----------Ccchhh----hcCC----CcccchhhhccCcccccchheeEE-------EEEEEc
Confidence 999999998754431 222211 1222 2566665544332 110 022221 355555
Q ss_pred CCc-eEEEehhh-hhc--CCCCCCC-ceEEEEEcCCCC
Q 000981 390 GQK-CEKLMLEE-FLE--RPPLDSR-SILLSVEIPCWD 422 (1202)
Q Consensus 390 ~~g-~R~vpl~d-F~~--~~~l~~~-eii~~I~iP~~~ 422 (1202)
.+| .++++-+| -|. ...++.. -+|+++.+...+
T Consensus 145 ~~G~~~~l~~~el~f~YR~S~f~~~~~vvl~v~f~L~~ 182 (291)
T COG0812 145 RDGEVRWLSAEELGFGYRTSPFKKEYLVVLSVEFKLTK 182 (291)
T ss_pred CCCCEEEEEHHHhCcccccCcCCCCCEEEEEEEEEeCC
Confidence 566 68899887 332 3444444 688887776654
No 99
>PLN02441 cytokinin dehydrogenase
Probab=87.97 E-value=1.5 Score=54.33 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=67.7
Q ss_pred ceEEecCCHHHHHHHHhhccC-CCCCceeEEccCccceEeeecccCCeeeeCCCccc------ccceeecCCcEEEcccC
Q 000981 241 GSWHSPISVQELRNVLESVEG-SNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPE------LSVIRRDQTGIEIGATV 313 (1202)
Q Consensus 241 ~~~~~P~sl~eal~ll~~~~~-~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~E------L~~I~~~~~~l~IGA~v 313 (1202)
...+.|+|.+|+.++++.... ..+-..+..+||++..-.-. .....+||++++.. ...+..+...+.+||++
T Consensus 66 ~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~-~~~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~ 144 (525)
T PLN02441 66 AAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQ-APGGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGE 144 (525)
T ss_pred CEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCcc-CCCeEEEECCCCCCcCccCceEEEcCCCCEEEEcCCC
Confidence 357899999999998885421 01223566788887642111 12468999998765 23334445689999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCcccccc
Q 000981 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ 366 (1202)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~ 366 (1202)
++.++.+.+.++. .. ..+..=-+..|+||+|.++.
T Consensus 145 ~~~dv~~~l~~~G---------la---------P~~~~d~~~~TVGG~ist~G 179 (525)
T PLN02441 145 LWIDVLKATLKHG---------LA---------PRSWTDYLYLTVGGTLSNAG 179 (525)
T ss_pred CHHHHHHHHHHCC---------Cc---------cCCccccCceEEeEEcCCCC
Confidence 9999988755430 00 01111123569999999853
No 100
>PRK05713 hypothetical protein; Provisional
Probab=87.81 E-value=0.73 Score=53.48 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=36.0
Q ss_pred EEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCCCCCCCccEEEEe
Q 000981 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 15 ~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~~G~CGaCtV~~~ 64 (1202)
+|..||+.+++ .+++|||+.+++. |+ -...+|+.|.||.|.|.+.
T Consensus 3 ~~~~~~~~~~~---~~g~tlL~a~~~~-gi-~~~~~C~~G~Cg~C~~~~~ 47 (312)
T PRK05713 3 ELRVGERRWSV---PAGSNLLDALNAA-GV-AVPYSCRAGSCHACLVRCL 47 (312)
T ss_pred cEecCCeEEEE---CCCCcHHHHHHHc-CC-CCCcCCCCcCCCCCeEEEE
Confidence 57889987665 5799999999863 54 3566899999999999983
No 101
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=87.27 E-value=3.6 Score=46.73 Aligned_cols=153 Identities=13% Similarity=0.129 Sum_probs=93.2
Q ss_pred ceeecCCceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccC
Q 000981 234 AMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (1202)
Q Consensus 234 ~~~~~~~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (1202)
.+.+.+.-+|+.|.|.+|+.++++ ....++.||+-+.+... ..+..+|-+.+. +..++.++ ++||++
T Consensus 14 t~riGG~A~~~~p~~~~~l~~~~~-------~p~~vlG~GSNlL~~D~-g~~g~vI~l~~~--~~~~~~~~---~a~AG~ 80 (273)
T PRK14651 14 TLGVGGPAELWTVETHEQLAEATE-------APYRVLGGGSNLLVSDA-GVPERVIRLGGE--FAEWDLDG---WVGGGV 80 (273)
T ss_pred EeecCceEEEEecCCHHHHHHHHC-------CCeEEEeceeEEEEcCC-CcceEEEEECCc--ceeEeECC---EEECCC
Confidence 355666344444999999999885 35788888887766333 344666766442 45555443 799999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccCCCCCCchHHHHHhcCcEEEEEeCCce
Q 000981 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKC 393 (1202)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p~~~~SD~~~~L~al~A~v~i~s~~g~ 393 (1202)
.+.+|.....++. +. -+.++++.+ |||||-+++.... +-.++.-.+. +|++...+..
T Consensus 81 ~~~~l~~~~~~~g----------l~----GlE~l~gIP----GTVGGAv~mNaGa-yG~ei~d~l~----~V~~~~~g~~ 137 (273)
T PRK14651 81 PLPGLVRRAARLG----------LS----GLEGLVGIP----AQVGGAVKMNAGT-RFGEMADALH----TVEIVHDGGF 137 (273)
T ss_pred cHHHHHHHHHHCC----------Cc----chhhhcCCC----cchhhHHHhhCCc-cccChheeEE----EEEEEECCCE
Confidence 9999998755431 11 122333332 7888887765542 1133333333 2333443447
Q ss_pred EEEehhh-hhc--CCCCCCCceEEEEEcCCCC
Q 000981 394 EKLMLEE-FLE--RPPLDSRSILLSVEIPCWD 422 (1202)
Q Consensus 394 R~vpl~d-F~~--~~~l~~~eii~~I~iP~~~ 422 (1202)
++++-+| .|. ...++.+.||+++.+...+
T Consensus 138 ~~~~~~e~~f~YR~S~~~~~~iIl~a~f~l~~ 169 (273)
T PRK14651 138 HQYSPDELGFGYRHSGLPPGHVVTRVRLKLRP 169 (273)
T ss_pred EEEEHHHccccccccCCCCCEEEEEEEEEECC
Confidence 7888887 333 4456556688888776654
No 102
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=85.90 E-value=1.7 Score=50.96 Aligned_cols=114 Identities=21% Similarity=0.323 Sum_probs=72.0
Q ss_pred ceeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCccccccee-ecC-CcEEEc
Q 000981 234 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIR-RDQ-TGIEIG 310 (1202)
Q Consensus 234 ~~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~-~~~-~~l~IG 310 (1202)
.+.+.+ ...|+.|.|.+|+.++++.... .+-...++.||+-+.+... ..+..+|.+.++.++.... .++ ..|++|
T Consensus 23 T~rIGG~A~~~~~p~s~~el~~~l~~~~~-~~~p~~iLG~GSNlL~~D~-g~~G~VI~l~~~~~i~i~~~~~~~~~v~ag 100 (354)
T PRK14648 23 SFRIGGAAQFWAEPRSCTQLRALIEEAQR-ARIPLSLIGGGSNVLIADE-GVPGLMLSLRRFRSLHTQTQRDGSVLVHAG 100 (354)
T ss_pred eeeeCcEEEEEEeeCCHHHHHHHHHHHHH-cCCCEEEEeceeEEEEeCC-CccEEEEEeCCcCceEEeeccCCcEEEEEE
Confidence 456666 6789999999999998873321 1335677888887766443 4567788875554442111 233 369999
Q ss_pred ccCcHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 311 ATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 311 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
|++.+.+|.....+.. +.. +..+++.+ ||+||-+.+...
T Consensus 101 AG~~~~~Lv~~~~~~g----------l~G----lE~laGIP----GTVGGAv~mNAG 139 (354)
T PRK14648 101 AGLPVAALLAFCAHHA----------LRG----LETFAGLP----GSVGGAAYMNAR 139 (354)
T ss_pred eCCcHHHHHHHHHHcC----------Ccc----hhhhcCCC----cchhhHhhhcCC
Confidence 9999999988754431 111 22333333 788887766544
No 103
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=85.08 E-value=1.5 Score=54.70 Aligned_cols=94 Identities=20% Similarity=0.381 Sum_probs=71.9
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCc-----ccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccc
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK-----SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLC 86 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~-----g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 86 (1202)
.+|+++|||+.+++. +.+|+|++|.+. |+. =.+.--.-|.|--|.|.+ +|+.+.||.+++.
T Consensus 4 ~~i~vtidg~~~~v~---~G~tiL~a~~~~-gI~iP~iCy~~~l~pi~sCd~ClVEi----------dG~l~rsCsT~v~ 69 (978)
T COG3383 4 KMITVTIDGRSIEVE---EGTTILRAANRN-GIEIPHICYHESLGPIGSCDTCLVEI----------DGKLVRSCSTPVE 69 (978)
T ss_pred eeEEEEECCeEEecC---CChHHHHHHHhc-CCcccceeccCCCCcccccceEEEEe----------cCceecccccccc
Confidence 358999999988774 699999999753 443 333344578999999999 7999999999975
Q ss_pred cccCceEEEeecCCCCCCCcchHH----HHHHhcCCCCCCCCChH
Q 000981 87 SVNGCLITTSEGLGNSKTGFHPIH----QRFAGFHASQCGFCTPG 127 (1202)
Q Consensus 87 ~~~g~~i~TvEgl~~~~~~~h~iq----~a~~~~~~~qCG~CtPG 127 (1202)
+|..|.|-. +.+..+| +.+...|-.-|--|.-+
T Consensus 70 --dGm~v~t~s------~rvk~~r~~~md~~l~nH~LyC~vCd~n 106 (978)
T COG3383 70 --DGMVVRTNS------ERVKEARREAMDRILSNHPLYCTVCDNN 106 (978)
T ss_pred --CCcEEeccc------HHHHHHHHHHHHHHHhcCCcCccccCCC
Confidence 699999843 2344444 45678899999888776
No 104
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=82.31 E-value=1.8 Score=55.10 Aligned_cols=91 Identities=24% Similarity=0.433 Sum_probs=63.2
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCccc----ccCCC-CCCCCccEEEEeccCCCcCCCCc--eeeceecccc
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSV----KLGCG-EGGCGACVVLLSKYNPELDQLED--FTISSCLTLL 85 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~----k~gC~-~G~CGaCtV~~~~~~~~~~~~~~--~~v~sCl~~~ 85 (1202)
+++++|||+.++++ .+.|||+..|+ .|+.=. ..+|+ -|-|.-|.|-+ .+ +++.||.+|+
T Consensus 1 m~tI~IDG~ei~v~---~g~tvLqAa~~-aGi~IP~fCyh~~ls~~GaCRmClVEv----------eg~~k~~~SC~tpv 66 (693)
T COG1034 1 MVTITIDGKEIEVP---EGETVLQAARE-AGIDIPTFCYHPRLSIAGACRMCLVEV----------EGAPKLVASCATPV 66 (693)
T ss_pred CeEEEECCEEEecC---CCcHHHHHHHH-cCCCCCcccccCCCCcccceeEEEEEe----------cCCCcccccccccc
Confidence 46899999999886 47799999985 354322 23455 78899999998 34 8999999975
Q ss_pred ccccCceEEEeecCCCCCCCc----chHHHHHHhcCCCCCCCCC
Q 000981 86 CSVNGCLITTSEGLGNSKTGF----HPIHQRFAGFHASQCGFCT 125 (1202)
Q Consensus 86 ~~~~g~~i~TvEgl~~~~~~~----h~iq~a~~~~~~~qCG~Ct 125 (1202)
. +|..|-| + .+.. +-|-+.+..+|-.=|+-|.
T Consensus 67 ~--dGM~I~T-----~-s~~vk~~R~~vmE~LLiNHPlDCpiCD 102 (693)
T COG1034 67 T--DGMVIST-----N-SEEVKKAREGVMEFLLINHPLDCPVCD 102 (693)
T ss_pred C--CCeEEec-----C-CHHHHHHHHHHHHHHHhcCCCCCCccC
Confidence 4 7988776 2 2222 3344455556666666665
No 105
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=78.49 E-value=4.1 Score=53.23 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=53.1
Q ss_pred CeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEc------ccCCCCCCCCCCccHHHHHHHHHH
Q 000981 789 QTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPVATACALAA 857 (1202)
Q Consensus 789 ~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFGgK~~~~~~~~~~aAlaA 857 (1202)
..+.+..+.||.++|+++++.. ..+.+.+|+.||+|.++|+|... .-+|.||++.+.. ...++-.||
T Consensus 476 ~~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~--~G~Av~~Aa 553 (770)
T TIGR02416 476 DSCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTPV--AGAATALAA 553 (770)
T ss_pred ceEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCchhHHHHH--HHHHHHHHH
Confidence 4577778888999999998755 45788999999999999999965 3468888887532 333445566
Q ss_pred HhcC
Q 000981 858 YKLC 861 (1202)
Q Consensus 858 ~~~g 861 (1202)
.+++
T Consensus 554 ~~l~ 557 (770)
T TIGR02416 554 RKIK 557 (770)
T ss_pred HHHH
Confidence 6653
No 106
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=74.96 E-value=7 Score=52.16 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=55.4
Q ss_pred cCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEc------ccCCCCCCCCCCccHHHHHHH
Q 000981 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPVATACA 854 (1202)
Q Consensus 786 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFGgK~~~~~~~~~~aA 854 (1202)
+++..+.+..+.||.++|+++++.. ..+.+.+|+.||+|.++|+|... .-+|.||++.+.. ..-++-
T Consensus 662 ~~~~~a~v~l~~dGsv~v~~g~~e~GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~p~~~gt~aSr~t~~--~G~Av~ 739 (956)
T PRK09800 662 IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCF--SGNAAR 739 (956)
T ss_pred CCCceEEEEECCCceEEEEECCCCCCccHHHHHHHHHHHHHCCCceeEEEEeCCCCCCCCCCCcchhhhHHH--HHHHHH
Confidence 4566778888888999999998855 56789999999999999999964 4578888887533 233344
Q ss_pred HHHHhcC
Q 000981 855 LAAYKLC 861 (1202)
Q Consensus 855 laA~~~g 861 (1202)
.||.+++
T Consensus 740 ~Aa~~l~ 746 (956)
T PRK09800 740 LAAENLR 746 (956)
T ss_pred HHHHHHH
Confidence 4555553
No 107
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=74.66 E-value=5.6 Score=53.08 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=54.9
Q ss_pred cCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEc------ccCCCCCCCCCCccHHHHHHH
Q 000981 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPVATACA 854 (1202)
Q Consensus 786 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFGgK~~~~~~~~~~aA 854 (1202)
+++..+.+..+.||.++|+++++.. ..+.+.+|+.||+|.++|+|+.. .-+|.||++.+.. ...++-
T Consensus 658 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~QiaAe~LGvp~d~V~v~~~DT~~~p~~~gt~aSr~t~~--~G~Av~ 735 (951)
T TIGR03313 658 IDQANCMIKLESDGTFIVHSGGADIGTGLDTVVSKLTAEVLHCPMDDVHVISGDTDHALFDKGAYASSGTCF--SGNAAK 735 (951)
T ss_pred CCCccEEEEEcCCceEEEEECCCCCCccHHHHHHHHHHHHHCCCHHhEEEEeCCCCCCCCCCCCcHHHHHHH--HHHHHH
Confidence 4567778888888999999999855 56789999999999999999964 4478888887532 233344
Q ss_pred HHHHhc
Q 000981 855 LAAYKL 860 (1202)
Q Consensus 855 laA~~~ 860 (1202)
.||.++
T Consensus 736 ~Aa~~l 741 (951)
T TIGR03313 736 RAAENL 741 (951)
T ss_pred HHHHHH
Confidence 455555
No 108
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=74.63 E-value=4.5 Score=52.79 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=52.2
Q ss_pred CCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE------cccCCCCCCCCCCccHHHHHHHH
Q 000981 787 ETQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPVATACAL 855 (1202)
Q Consensus 787 Ep~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~vGGgFGgK~~~~~~~~~~aAl 855 (1202)
.+..+.+..++||.++|+++++.. ..+.+.+|+.||+|.++|+|.. +..+|.+|++.+.. ...++..
T Consensus 446 ~~~~a~v~i~~dG~v~v~~g~~e~GQG~~T~laQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~gSr~t~~--~g~Av~~ 523 (758)
T TIGR02965 446 NQAGALVHVYTDGSIHLNHGGTEMGQGLNTKVAQVVAEEFQVDIDRVKITATDTDKVPNTSATAASSGSDL--NGMAAQD 523 (758)
T ss_pred CccceEEEEeCCCcEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCccCCCCCCCCchHHHHHH--HHHHHHH
Confidence 445677777888999999998664 4567889999999999999985 45577788886432 2333444
Q ss_pred HHHhc
Q 000981 856 AAYKL 860 (1202)
Q Consensus 856 aA~~~ 860 (1202)
||.++
T Consensus 524 Aa~~l 528 (758)
T TIGR02965 524 AARQI 528 (758)
T ss_pred HHHHH
Confidence 55555
No 109
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=74.27 E-value=5.8 Score=47.58 Aligned_cols=107 Identities=19% Similarity=0.331 Sum_probs=77.0
Q ss_pred CCCCCCcccEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCC------CCCCCccEEEEeccCCCcCCCCcee
Q 000981 4 QQQHGGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG------EGGCGACVVLLSKYNPELDQLEDFT 77 (1202)
Q Consensus 4 ~~~~~~~~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~ 77 (1202)
..+|-.+-.+|+.+|+|+.+.| +|.+|+|.--- ..|..=. .=|- -|.|--|.|.|.+. -++
T Consensus 23 ~~~~~a~~~~ievfvd~~~v~v---~pg~tvlqac~-~~gv~ip-rfcyh~rlsvagncrmclveveks--------pkp 89 (708)
T KOG2282|consen 23 TTATPASPNKIEVFVDDQSVMV---EPGTTVLQACA-KVGVDIP-RFCYHERLSVAGNCRMCLVEVEKS--------PKP 89 (708)
T ss_pred eeeccCCccceEEEECCeeEee---CCCcHHHHHHH-HhCCCcc-hhhhhhhhhhccceeEEEEEeccC--------CCc
Confidence 3456666788999999998776 58999988653 2233222 2232 48999999999543 578
Q ss_pred eceeccccccccCceEEEeecCCCCCCCcchHHHHHHhcCCCCCCCCChH
Q 000981 78 ISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 127 (1202)
Q Consensus 78 v~sCl~~~~~~~g~~i~TvEgl~~~~~~~h~iq~a~~~~~~~qCG~CtPG 127 (1202)
|.||-||+ +.|+.|.|=--+.+ ..-.-|-+-|.-+|-.-|.-|.-|
T Consensus 90 va~campv--m~g~~iktns~~~k--karegvmefll~nhpldcpicdqg 135 (708)
T KOG2282|consen 90 VAACAMPV--MKGWKIKTNSDKSK--KAREGVMEFLLMNHPLDCPICDQG 135 (708)
T ss_pred chhhcccc--cCCceeecCchHHH--HHHHHHHHHHHhCCCCCCCccCCC
Confidence 99999997 46999999655532 123347777888899999888866
No 110
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=73.75 E-value=6.2 Score=51.42 Aligned_cols=74 Identities=22% Similarity=0.179 Sum_probs=54.7
Q ss_pred cCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEcc------cCCCCCCCCCCccHHHHHHH
Q 000981 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITRR------VGGAFGGKAIKAMPVATACA 854 (1202)
Q Consensus 786 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~~------vGGgFGgK~~~~~~~~~~aA 854 (1202)
..+..+.+..++||.++|+++++.. ..+++.+|+.||+|.++|+|.... -+|.+|++.+. ....++-
T Consensus 442 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt~~Sr~t~--~~G~Av~ 519 (746)
T TIGR03194 442 EPHATVALKLDFDGGITLLTGAADIGQGSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTF--MVGNAAI 519 (746)
T ss_pred CCCceEEEEEcCCccEEEEEcCCCCCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCChhHhHHH--HHHHHHH
Confidence 3456778888888999999988655 567899999999999999999654 57778887653 2333444
Q ss_pred HHHHhcC
Q 000981 855 LAAYKLC 861 (1202)
Q Consensus 855 laA~~~g 861 (1202)
.||.+++
T Consensus 520 ~Aa~~l~ 526 (746)
T TIGR03194 520 DAAEELK 526 (746)
T ss_pred HHHHHHH
Confidence 5566553
No 111
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=64.84 E-value=9.8 Score=52.69 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=47.7
Q ss_pred cCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEcc------cCCCCCCCCC
Q 000981 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITRR------VGGAFGGKAI 844 (1202)
Q Consensus 786 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~~------vGGgFGgK~~ 844 (1202)
+...++++....||.++|+++++.. ..+.+.+|+.||||.++|+|.... -+|.+|++.+
T Consensus 1015 ~~~~~a~v~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~gSr~t 1084 (1330)
T TIGR02969 1015 MGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVA 1084 (1330)
T ss_pred CCCccEEEEEcCCceEEEEECCcCcCCChHHHHHHHHHHHhCCCHHHEEEEcCCCCCCCCCCCCchHHHH
Confidence 4556778888888999999998655 456788999999999999998644 4788888865
No 112
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=63.47 E-value=12 Score=49.62 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=50.6
Q ss_pred CCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEc------ccCCCCCCCCCCccHHHHHHHHH
Q 000981 788 TQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPVATACALA 856 (1202)
Q Consensus 788 p~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFGgK~~~~~~~~~~aAla 856 (1202)
+..++.... ||.++|+++++.. ..+.+.+|+.||+|.++|+|... .-+|.+|++.+.. ..-++-.|
T Consensus 594 ~~~~~~~~~-DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~aSR~t~~--~G~Av~~A 670 (848)
T TIGR03311 594 TGRCNLAVE-DGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCELPDTALTPDSGTTTASRQSLF--TGEATRRA 670 (848)
T ss_pred cceEEEEEc-CCEEEEEECCCCcCcCHHHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCchhhHHHH--HHHHHHHH
Confidence 445566665 7899999998765 45678899999999999999864 4578888886532 33344455
Q ss_pred HHhcC
Q 000981 857 AYKLC 861 (1202)
Q Consensus 857 A~~~g 861 (1202)
|.+++
T Consensus 671 a~~l~ 675 (848)
T TIGR03311 671 AAKLK 675 (848)
T ss_pred HHHHH
Confidence 56554
No 113
>PLN02906 xanthine dehydrogenase
Probab=62.37 E-value=16 Score=50.68 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=53.5
Q ss_pred cCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE------cccCCCCCCCCCCccHHHHHHH
Q 000981 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPVATACA 854 (1202)
Q Consensus 786 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~vGGgFGgK~~~~~~~~~~aA 854 (1202)
+.+..+.+..+.||.++|+++++.. ..+.+.+|+.||+|.++|+|.. +.-+|.+|++.+.. ...++-
T Consensus 1010 ~~~~~a~V~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~d~V~v~~~DT~~~p~~~gT~aSr~t~~--~G~Av~ 1087 (1319)
T PLN02906 1010 MNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFISETSTDKVPNASPTAASASSDM--YGAAVL 1087 (1319)
T ss_pred CCccceEEEEcCCceEEEEECCccCCCChHHHHHHHHHHHHCCCHHHEEEEccCCCCCCCCCCCccchhhHh--HHHHHH
Confidence 4566788888888999999987543 4567888999999999999985 44578888887532 333444
Q ss_pred HHHHhc
Q 000981 855 LAAYKL 860 (1202)
Q Consensus 855 laA~~~ 860 (1202)
.||.++
T Consensus 1088 ~Aa~~l 1093 (1319)
T PLN02906 1088 DACEQI 1093 (1319)
T ss_pred HHHHHH
Confidence 555555
No 114
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=61.29 E-value=15 Score=48.04 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=50.0
Q ss_pred eEEEEECCCCc--EEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE------cccCCCCCCCCCCccHHHHHHHHH
Q 000981 790 TALAVPDEDNC--LVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPVATACALA 856 (1202)
Q Consensus 790 ~avA~~~~dg~--l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~vGGgFGgK~~~~~~~~~~aAla 856 (1202)
.+.+..+.||. ++|+++++.. ..+.+.+|+.||||.++|+|.. +.-+|.+|++.+.. ...++-.|
T Consensus 467 ~a~v~l~~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~--~G~Av~~A 544 (768)
T TIGR03196 467 GARLELAEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGCAAEDISIAIADTAKGPKAGSSSASRGTSM--SGGAIQGA 544 (768)
T ss_pred cEEEEEeCCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCchhhhhHh--HHHHHHHH
Confidence 56777777884 8899877554 4567889999999999999985 34678888887533 23334455
Q ss_pred HHhcC
Q 000981 857 AYKLC 861 (1202)
Q Consensus 857 A~~~g 861 (1202)
|.+++
T Consensus 545 a~~l~ 549 (768)
T TIGR03196 545 CAAFA 549 (768)
T ss_pred HHHHH
Confidence 55553
No 115
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=57.24 E-value=22 Score=44.77 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=39.2
Q ss_pred CCeEEEEECCCCcEEEEeCC----CCh-HHHHHHHHHHhCCCCccEEEEEcc------cCCCCCCCCC
Q 000981 788 TQTALAVPDEDNCLVVYSSI----QCP-ESAHATIARCLGIPEHNVRVITRR------VGGAFGGKAI 844 (1202)
Q Consensus 788 p~~avA~~~~dg~l~V~~sT----Q~p-~~~r~~vA~~Lglp~~kV~V~~~~------vGGgFGgK~~ 844 (1202)
..++.+..++||.++|+++. |+. ..+.+.+|+.||+|.++|+|.... -+|.+|++.+
T Consensus 319 ~~~a~v~l~~DG~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~~p~~~~t~gSr~t 386 (547)
T PF02738_consen 319 QSSARVRLNPDGSVTVYTGGVEMGQGSRTALAQIAAEELGIPPEDVRVVSGDTDTTPYDGGTGGSRST 386 (547)
T ss_dssp EEEEEEEE-TTS-EEEEES--BSSSSHHHHHHHHHHHHHTS-GGGEEEEECBTTTS-SB--S-TTTHH
T ss_pred CCcEEEEEEeCCCEEEEEecccCCcchhhhHHHHHHHHhCCChhhEEEEeCCCcCCCCCCCCccchhh
Confidence 45677778889999999887 444 356789999999999999998654 4577777754
No 116
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=52.96 E-value=19 Score=33.52 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=26.6
Q ss_pred CCcccEEEEEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 8 GGTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 8 ~~~~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
++..+++.++|||+++++. ..+||.++|.. +++.
T Consensus 13 ~~~~~~m~I~VNG~~~~~~---~~~tl~~LL~~-l~~~ 46 (84)
T PRK06083 13 GAAMVLITISINDQSIQVD---ISSSLAQIIAQ-LSLP 46 (84)
T ss_pred CCCCceEEEEECCeEEEcC---CCCcHHHHHHH-cCCC
Confidence 4555679999999999985 47899999974 5653
No 117
>PRK07440 hypothetical protein; Provisional
Probab=52.78 E-value=18 Score=32.44 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=23.6
Q ss_pred EEEEEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 13 ~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
+|.++|||+++++. ..+||.++|++ +++.
T Consensus 4 ~m~i~vNG~~~~~~---~~~tl~~lL~~-l~~~ 32 (70)
T PRK07440 4 PITLQVNGETRTCS---SGTSLPDLLQQ-LGFN 32 (70)
T ss_pred ceEEEECCEEEEcC---CCCCHHHHHHH-cCCC
Confidence 68899999998885 47899999974 5664
No 118
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=52.44 E-value=24 Score=42.24 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=52.3
Q ss_pred eEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccCcHHHHHHH
Q 000981 242 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 321 (1202)
Q Consensus 242 ~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 321 (1202)
.+-.|+|++|+.++.++... .+...|.|. -++.+-+-...-..+|++..+.---.+.-+...+.+=|++|+.||.+.
T Consensus 52 nv~yP~teaeL~~lVa~A~~-a~~kirvVg--~gHSp~~l~ctdg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~ 128 (518)
T KOG4730|consen 52 NVNYPKTEAELVELVAAATE-AGKKIRVVG--SGHSPSKLVCTDGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEE 128 (518)
T ss_pred ccCCCCCHHHHHHHHHHHHH-cCceEEEec--ccCCCCcceeccccEEEhhhhccceeeCchhceEEeccCcCHHHHHHH
Confidence 34459999999999885421 234556555 333332221223478888776544344444468899999999999998
Q ss_pred HHHH
Q 000981 322 LKEE 325 (1202)
Q Consensus 322 l~~~ 325 (1202)
+.+.
T Consensus 129 ~~~~ 132 (518)
T KOG4730|consen 129 LAKL 132 (518)
T ss_pred HHhc
Confidence 7764
No 119
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=48.66 E-value=24 Score=31.48 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=25.2
Q ss_pred cEEEEEECCEEEEEccCCCCCcHHHHHhhccCCcc
Q 000981 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKS 46 (1202)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g 46 (1202)
|++++.+||+++++.. .+||.|+|++ +++..
T Consensus 1 ~~m~i~~ng~~~e~~~---~~tv~dLL~~-l~~~~ 31 (68)
T COG2104 1 MPMTIQLNGKEVEIAE---GTTVADLLAQ-LGLNP 31 (68)
T ss_pred CcEEEEECCEEEEcCC---CCcHHHHHHH-hCCCC
Confidence 5688999999999862 4999999985 67764
No 120
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=47.93 E-value=40 Score=29.60 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=22.0
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
+.++|||+++++. ..+||.++|.. +++.
T Consensus 1 m~i~vNg~~~~~~---~~~tl~~ll~~-l~~~ 28 (66)
T PRK08053 1 MQILFNDQPMQCA---AGQTVHELLEQ-LNQL 28 (66)
T ss_pred CEEEECCeEEEcC---CCCCHHHHHHH-cCCC
Confidence 3689999999985 36899999974 5664
No 121
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=46.85 E-value=8.6 Score=43.03 Aligned_cols=16 Identities=50% Similarity=1.186 Sum_probs=14.4
Q ss_pred ccCCCCCCCCccEEEE
Q 000981 48 KLGCGEGGCGACVVLL 63 (1202)
Q Consensus 48 k~gC~~G~CGaCtV~~ 63 (1202)
..+|+.|.||+|.|-+
T Consensus 214 ~m~cg~G~C~~C~~~~ 229 (250)
T PRK00054 214 RMKCGIGACGACVCDT 229 (250)
T ss_pred cccCcCcccCcCCccc
Confidence 4689999999999987
No 122
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=44.26 E-value=14 Score=41.09 Aligned_cols=17 Identities=41% Similarity=0.935 Sum_probs=15.0
Q ss_pred cccCCCCCCCCccEEEE
Q 000981 47 VKLGCGEGGCGACVVLL 63 (1202)
Q Consensus 47 ~k~gC~~G~CGaCtV~~ 63 (1202)
.+-+|+.|.||+|+|-.
T Consensus 212 ~~m~Cg~G~C~~C~~~~ 228 (243)
T cd06192 212 SPMCCGIGICGACTIET 228 (243)
T ss_pred ccccCccccccceEEEe
Confidence 46799999999999975
No 123
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=41.90 E-value=1e+02 Score=28.52 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.2
Q ss_pred CceeeeeEEEEeccCCcccccHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000981 470 GIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLL 515 (1202)
Q Consensus 470 ~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l 515 (1202)
+++|++++|.=--+... . ..+.|+.|.|.+++.+.+.++++.+
T Consensus 26 ~G~I~~i~i~gDf~~~~-~--i~~le~~L~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 26 NGIIKDIKIYGDFFGPE-D--IEELEEALIGCPYDREAIKEALNSV 68 (86)
T ss_dssp TTEEEEEEEEECBS-CC-C--HHHHHHHHTTCBSSHHHHHHHHHHC
T ss_pred CCEEEEEEEECCCCCch-H--HHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 47999999974455543 3 7899999999999999999998876
No 124
>PLN00192 aldehyde oxidase
Probab=39.78 E-value=56 Score=45.58 Aligned_cols=73 Identities=18% Similarity=0.113 Sum_probs=50.6
Q ss_pred cCCCeEEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCC--------CCccEEEEEc------ccCCCCCCCCCCc
Q 000981 786 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGI--------PEHNVRVITR------RVGGAFGGKAIKA 846 (1202)
Q Consensus 786 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lgl--------p~~kV~V~~~------~vGGgFGgK~~~~ 846 (1202)
+-+..+++....||.++|+++.+.. ..+.+.+|+.||+ |.++|+|... .-+|.+|++.+..
T Consensus 1028 ~~~~~a~v~i~~DGsv~v~~G~~e~GQG~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~gSr~t~~ 1107 (1344)
T PLN00192 1028 LRPTPGKVSILSDGSIAVEVGGIEIGQGLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTAGSTTSES 1107 (1344)
T ss_pred ccCCceEEEEeCCceEEEEECCCCCCCCHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCchhhhHHH
Confidence 3345777777778999999998544 4567888999995 9999999864 4467778776422
Q ss_pred cHHHHHHHHHHHhc
Q 000981 847 MPVATACALAAYKL 860 (1202)
Q Consensus 847 ~~~~~~aAlaA~~~ 860 (1202)
...++-.||.++
T Consensus 1108 --~G~Av~~Ac~~l 1119 (1344)
T PLN00192 1108 --SCEAVRLCCVIL 1119 (1344)
T ss_pred --HHHHHHHHHHHH
Confidence 223334445554
No 125
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=39.45 E-value=18 Score=28.73 Aligned_cols=17 Identities=47% Similarity=1.288 Sum_probs=12.7
Q ss_pred ccCCCCCCCCccEEEEe
Q 000981 48 KLGCGEGGCGACVVLLS 64 (1202)
Q Consensus 48 k~gC~~G~CGaCtV~~~ 64 (1202)
+-+|+-|.|++|.|-..
T Consensus 3 ~M~CG~G~C~~C~v~~~ 19 (40)
T PF10418_consen 3 RMACGVGACGGCVVPVK 19 (40)
T ss_dssp --SSSSSSS-TTEEECS
T ss_pred cccCCCcEeCCcEeeee
Confidence 56899999999999774
No 126
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=38.81 E-value=67 Score=43.55 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=55.3
Q ss_pred ccEEEEEECCEEEEEccCCCCCcHHHHHhhc-cCC--cccccC------CCCCCCCccEEEEeccCCCcCCCCc-eeece
Q 000981 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYH-TRF--KSVKLG------CGEGGCGACVVLLSKYNPELDQLED-FTISS 80 (1202)
Q Consensus 11 ~~~i~~~vNg~~~~~~~~~p~~~L~~~LR~~-~~l--~g~k~g------C~~G~CGaCtV~~~~~~~~~~~~~~-~~v~s 80 (1202)
...|+|++||++++.- +..||..-|-.. ..+ ++.|.| |.-|.|--|.|.|+.- ..+ .-+.+
T Consensus 10 ~~~~~~~~dg~~~~~~---~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~------~~~~~~~~a 80 (985)
T TIGR01372 10 SRPLRFTFDGKSYSGF---AGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSG------AQREPNTRA 80 (985)
T ss_pred CCeEEEEECCEEeecC---CCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCC------cCCCCCccc
Confidence 3489999999998874 678887766431 112 234432 8877789999999310 001 23689
Q ss_pred eccccccccCceEEEeecCCC
Q 000981 81 CLTLLCSVNGCLITTSEGLGN 101 (1202)
Q Consensus 81 Cl~~~~~~~g~~i~TvEgl~~ 101 (1202)
|++++. +|..|.|.-+..+
T Consensus 81 c~~~~~--~gm~~~~~~~~~~ 99 (985)
T TIGR01372 81 TTQELY--DGLVATSQNRWPS 99 (985)
T ss_pred eeEEcc--cCCEEecccCCCc
Confidence 999976 6999999887654
No 127
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=37.85 E-value=36 Score=29.68 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=21.6
Q ss_pred EEEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 15 ~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
+++|||+++++. ..+||.++|.. +++.
T Consensus 2 ~i~vNG~~~~~~---~~~tl~~lL~~-l~~~ 28 (66)
T PRK05659 2 NIQLNGEPRELP---DGESVAALLAR-EGLA 28 (66)
T ss_pred EEEECCeEEEcC---CCCCHHHHHHh-cCCC
Confidence 689999998875 46899999974 5664
No 128
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=36.50 E-value=89 Score=28.62 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=40.1
Q ss_pred cceEEEEeeCCcEEEEECCcCCCCchhHHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcc
Q 000981 1056 TPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLS 1117 (1202)
Q Consensus 1056 ~~a~V~i~~DGsV~V~~g~~e~GQG~~T~~aQIaAe~Lgi~~~~~~~~~~e~V~v~~~dT~~ 1117 (1202)
......++.||.+.|...+....-=-|..+....|+.|++ |..+|.++.+.|+.
T Consensus 16 ~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v--------~ks~i~i~~G~~Sr 69 (77)
T PF02594_consen 16 RNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGV--------PKSDIEIVSGHTSR 69 (77)
T ss_dssp S-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT----------TTCEEECC-CCCS
T ss_pred ccccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCC--------CcccEEEEecCCCC
Confidence 3444567767999999888888767899999999999999 89999999887753
No 129
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=35.79 E-value=37 Score=29.76 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=22.4
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
++++|||+++++. +.+||.++|.. +++.
T Consensus 1 m~i~vNG~~~~~~---~~~tl~~ll~~-l~~~ 28 (65)
T PRK05863 1 MIVVVNEEQVEVD---EQTTVAALLDS-LGFP 28 (65)
T ss_pred CEEEECCEEEEcC---CCCcHHHHHHH-cCCC
Confidence 3689999999885 47899999985 5664
No 130
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=35.42 E-value=15 Score=41.49 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=20.6
Q ss_pred HHHHHhhccCC--------cccccCCCCCCCCccEEE
Q 000981 34 LLEFLRYHTRF--------KSVKLGCGEGGCGACVVL 62 (1202)
Q Consensus 34 L~~~LR~~~~l--------~g~k~gC~~G~CGaCtV~ 62 (1202)
+.+.|++ +|+ -..+..|+.|-||+|.|-
T Consensus 205 ~~~~L~~-~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 205 TVQELLK-KGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHH-cCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 4555654 354 357889999999999984
No 131
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=34.30 E-value=49 Score=29.31 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=21.8
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
+.++|||+.+++. ++..||.++|. .+++.
T Consensus 1 m~I~vNG~~~~~~--~~~~tv~~lL~-~l~~~ 29 (67)
T PRK07696 1 MNLKINGNQIEVP--ESVKTVAELLT-HLELD 29 (67)
T ss_pred CEEEECCEEEEcC--CCcccHHHHHH-HcCCC
Confidence 3579999999885 23368999997 46764
No 132
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=32.89 E-value=45 Score=37.69 Aligned_cols=50 Identities=26% Similarity=0.513 Sum_probs=36.9
Q ss_pred cEEEEEECCEE-EEEccCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEe
Q 000981 12 HSVVFAVNGEK-FEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLS 64 (1202)
Q Consensus 12 ~~i~~~vNg~~-~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~-~G~CGaCtV~~~ 64 (1202)
-.|++.|||-+ .+.+ +++..+||.-|-.. |+- +-..|+ .|.||-|.|.|.
T Consensus 35 gd~ti~IN~d~e~~~t-~~aG~kLL~~L~~~-gif-i~SaCGGggsC~QCkv~v~ 86 (410)
T COG2871 35 GDITIKINGDPEKTKT-VPAGGKLLGALASS-GIF-ISSACGGGGSCGQCKVRVK 86 (410)
T ss_pred CceEEEeCCChhhcee-cCCchhHHHHHHhC-Ccc-cccCCCCCccccccEEEEe
Confidence 35889999833 3444 68899999999865 543 455676 778999999883
No 133
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=32.41 E-value=61 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=23.6
Q ss_pred EEEEEECCE--EEEEccCCCCCcHHHHHhhccCCc
Q 000981 13 SVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 13 ~i~~~vNg~--~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
+|++.|||+ +.+++ +++++|+.++|+ ++++.
T Consensus 4 mm~v~vng~~~~~~~~-~~~~~tv~~ll~-~l~~~ 36 (70)
T PRK08364 4 MIRVKVIGRGIEKEIE-WRKGMKVADILR-AVGFN 36 (70)
T ss_pred EEEEEEeccccceEEE-cCCCCcHHHHHH-HcCCC
Confidence 588999999 44554 567899999997 46764
No 134
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=32.14 E-value=45 Score=40.53 Aligned_cols=48 Identities=35% Similarity=0.635 Sum_probs=38.1
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCcccccCCC-CCCCCccEEEEeccC
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCG-EGGCGACVVLLSKYN 67 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~g~k~gC~-~G~CGaCtV~~~~~~ 67 (1202)
++|.=-||+.+ +..+|.||.-|+ +| -+++.-|+ .|.||-|.|.|.+.|
T Consensus 4 v~f~psgkr~~----~~g~~il~aar~-~g-v~i~s~cggk~~cgkc~v~v~~g~ 52 (614)
T COG3894 4 VTFMPSGKRGE----DEGTTILDAARR-LG-VYIRSVCGGKGTCGKCQVVVQEGN 52 (614)
T ss_pred eEeecCCCcCC----CCCchHHHHHHh-hC-ceEeeecCCCccccceEEEEEeCC
Confidence 67777898866 357899999885 46 56788888 899999999997553
No 135
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=31.88 E-value=25 Score=37.80 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=35.8
Q ss_pred CCcHHHHHhh---ccCCc-ccccCCCCCCCCccEEEEeccCCCcCCCCceeeceeccccccccCceEEEee
Q 000981 31 STTLLEFLRY---HTRFK-SVKLGCGEGGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSE 97 (1202)
Q Consensus 31 ~~~L~~~LR~---~~~l~-g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvE 97 (1202)
...+||-|-. +..-| -.+.+|.||-||.|..-| +|.--.+|+.-+-+ ++...++|=
T Consensus 76 GpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI----------~G~NtLACi~kId~-n~sK~~kIy 135 (288)
T KOG3049|consen 76 GPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI----------NGTNTLACICKIDQ-NESKSTKIY 135 (288)
T ss_pred chHHHHHHHHhhcccCCceehhhhhhccccccceecc----------CCCceeEEEEeecc-CCcccceee
Confidence 4456676632 22111 247899999999999888 57777899877655 333344443
No 136
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=30.33 E-value=91 Score=27.11 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=20.6
Q ss_pred EEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 16 ~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
++|||+.+++. ..+||.++|.. +++.
T Consensus 1 i~iNg~~~~~~---~~~tv~~ll~~-l~~~ 26 (64)
T TIGR01683 1 ITVNGEPVEVE---DGLTLAALLES-LGLD 26 (64)
T ss_pred CEECCeEEEcC---CCCcHHHHHHH-cCCC
Confidence 47999999985 36899999974 6665
No 137
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=28.71 E-value=21 Score=40.37 Aligned_cols=17 Identities=41% Similarity=0.982 Sum_probs=14.6
Q ss_pred ccccCCCCCCCCccEEE
Q 000981 46 SVKLGCGEGGCGACVVL 62 (1202)
Q Consensus 46 g~k~gC~~G~CGaCtV~ 62 (1202)
.++-.|+.|-||+|+|.
T Consensus 226 ~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 226 ERKMCCGVGKCGHCKID 242 (263)
T ss_pred cceeEccCcccCCcccC
Confidence 45789999999999974
No 138
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=28.62 E-value=96 Score=35.13 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=62.6
Q ss_pred eeecC-CceEEecCCHHHHHHHHhhccCCCCCceeEEccCccceEeeecccCCeeeeCCCcccccceeecCCcEEEcccC
Q 000981 235 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 313 (1202)
Q Consensus 235 ~~~~~-~~~~~~P~sl~eal~ll~~~~~~~~~~a~lvaGgT~lgv~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 313 (1202)
+.+.+ ..-|+.|.+.+ + . -...++.+|+-+.+-... ...+| + ..+++.++.+++.|++||++
T Consensus 13 ~~iGG~A~~~~~~~~~~-l----~-------~p~~vlG~GSNlLv~D~g--~~~vv-~--~~~~~~~~~~~~~v~~~AG~ 75 (257)
T PRK13904 13 VKIGPPLEVLVLEEIDD-F----S-------QDGQIIGGANNLLISPNP--KNLAI-L--GKNFDYIKIDGECLEIGGAT 75 (257)
T ss_pred eeECceEEEEEEechhh-h----C-------CCeEEEeceeEEEEecCC--ccEEE-E--ccCcCeEEEeCCEEEEEcCC
Confidence 55556 44567787777 4 2 357888888877664432 34555 2 23467777788899999999
Q ss_pred cHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccccccccccCCccccccC
Q 000981 314 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 367 (1202)
Q Consensus 314 Tl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~iAs~qIRN~aTiGGNl~~a~p 367 (1202)
.+.+|.....++. +.. +...++.+ |||||-+.+...
T Consensus 76 ~l~~l~~~~~~~g----------l~G----lE~l~gIP----GtVGGAv~mNaG 111 (257)
T PRK13904 76 KSGKIFNYAKKNN----------LGG----FEFLGKLP----GTLGGLVKMNAG 111 (257)
T ss_pred cHHHHHHHHHHCC----------Cch----hhhhcCCC----ccHHHHHHhcCC
Confidence 9999998754431 111 22333333 788888766544
No 139
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=25.56 E-value=1.3e+02 Score=26.12 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 16 ~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
++|||+.+++. ..+|+.++|.. +++.
T Consensus 2 i~iNg~~~~~~---~~~tv~~ll~~-l~~~ 27 (65)
T cd00565 2 ITVNGEPREVE---EGATLAELLEE-LGLD 27 (65)
T ss_pred EEECCeEEEcC---CCCCHHHHHHH-cCCC
Confidence 78999999986 36899999964 5654
No 140
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=25.48 E-value=69 Score=27.76 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=21.6
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
+.++|||+.+++. +.+||.++|. .+++.
T Consensus 1 m~i~vNg~~~~~~---~~~tl~~ll~-~l~~~ 28 (65)
T PRK06944 1 MDIQLNQQTLSLP---DGATVADALA-AYGAR 28 (65)
T ss_pred CEEEECCEEEECC---CCCcHHHHHH-hhCCC
Confidence 3689999998874 4789999997 45653
No 141
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=24.44 E-value=29 Score=38.89 Aligned_cols=17 Identities=35% Similarity=0.985 Sum_probs=15.5
Q ss_pred ccccCCCCCCCCccEEE
Q 000981 46 SVKLGCGEGGCGACVVL 62 (1202)
Q Consensus 46 g~k~gC~~G~CGaCtV~ 62 (1202)
.++..|++|-||+|.|.
T Consensus 224 ~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 224 ERRMKCGVGKCGHCQIG 240 (253)
T ss_pred hhccccCCccccCcccC
Confidence 67889999999999996
No 142
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=24.33 E-value=35 Score=37.62 Aligned_cols=16 Identities=38% Similarity=0.928 Sum_probs=14.3
Q ss_pred ccCCCCCCCCccEEEE
Q 000981 48 KLGCGEGGCGACVVLL 63 (1202)
Q Consensus 48 k~gC~~G~CGaCtV~~ 63 (1202)
...|+.|.||+|.|-.
T Consensus 200 f~~cg~g~C~~C~v~~ 215 (233)
T cd06220 200 YMKCGIGICGSCCIDP 215 (233)
T ss_pred cccCcCCCcCccEecc
Confidence 4699999999999976
No 143
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=24.26 E-value=2.1e+02 Score=26.26 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=28.2
Q ss_pred EEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE
Q 000981 791 ALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT 832 (1202)
Q Consensus 791 avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~ 832 (1202)
.+.-+.+++.|.|....+-- ..+...+|+.||+|.++|.+..
T Consensus 18 ~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~ 64 (77)
T PF02594_consen 18 AIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVS 64 (77)
T ss_dssp EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC
T ss_pred ccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEe
Confidence 44444444578888776543 5688999999999999999875
No 144
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=21.25 E-value=58 Score=36.35 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=20.6
Q ss_pred HHHHHhhccCCcc-----cccCCCCCCCCccEEEE
Q 000981 34 LLEFLRYHTRFKS-----VKLGCGEGGCGACVVLL 63 (1202)
Q Consensus 34 L~~~LR~~~~l~g-----~k~gC~~G~CGaCtV~~ 63 (1202)
+.+.|++ .|+.. .+-+|+.|.||+|+|-.
T Consensus 195 ~~~~l~~-~Gv~~~~s~e~~m~Cg~G~C~~C~~~~ 228 (248)
T cd06219 195 VSELTRP-YGIPTVVSLNPIMVDGTGMCGACRVTV 228 (248)
T ss_pred HHHHHHH-cCCCEEEEecccccCccceeeeEEEEe
Confidence 3455653 34432 46799999999999975
No 145
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=20.91 E-value=94 Score=27.08 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEEECCEEEEEccCCCCCcHHHHHhhccCCc
Q 000981 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFK 45 (1202)
Q Consensus 14 i~~~vNg~~~~~~~~~p~~~L~~~LR~~~~l~ 45 (1202)
+.++|||++++++ .+||.++|.. +++.
T Consensus 1 m~i~~Ng~~~~~~----~~tl~~Ll~~-l~~~ 27 (65)
T PRK06488 1 MKLFVNGETLQTE----ATTLALLLAE-LDYE 27 (65)
T ss_pred CEEEECCeEEEcC----cCcHHHHHHH-cCCC
Confidence 3689999999983 3589999974 5553
Done!