Query 000982
Match_columns 1201
No_of_seqs 370 out of 1039
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 12:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1948 Metalloproteinase-rela 100.0 7E-224 1E-228 1921.7 93.2 1129 4-1200 5-1165(1165)
2 KOG1948 Metalloproteinase-rela 100.0 4.6E-52 1E-56 485.7 60.9 933 47-1194 129-1164(1165)
3 COG4932 Predicted outer membra 100.0 2.5E-28 5.4E-33 297.0 29.7 409 38-479 973-1416(1531)
4 COG4932 Predicted outer membra 100.0 1.4E-26 3E-31 281.9 30.3 411 144-590 981-1431(1531)
5 PF13620 CarboxypepD_reg: Carb 98.8 9.7E-09 2.1E-13 94.3 7.0 69 327-395 1-74 (82)
6 PF13620 CarboxypepD_reg: Carb 98.7 2.1E-08 4.5E-13 92.1 7.0 74 127-210 1-74 (82)
7 PF05738 Cna_B: Cna protein B- 98.3 1.3E-06 2.7E-11 77.9 5.6 61 51-111 1-64 (70)
8 PF13715 DUF4480: Domain of un 98.0 1.3E-05 2.8E-10 74.7 7.5 57 327-384 1-59 (88)
9 PF05738 Cna_B: Cna protein B- 98.0 1.5E-05 3.3E-10 70.9 7.1 61 148-209 1-65 (70)
10 PF13715 DUF4480: Domain of un 97.9 5.9E-05 1.3E-09 70.3 9.2 58 127-196 1-58 (88)
11 cd03863 M14_CPD_II The second 97.8 3.8E-05 8.2E-10 90.4 6.7 73 326-400 297-371 (375)
12 PF07210 DUF1416: Protein of u 97.6 0.00013 2.8E-09 65.6 6.4 57 127-193 9-65 (85)
13 cd06245 M14_CPD_III The third 97.6 0.00011 2.3E-09 86.4 7.3 67 326-394 287-353 (363)
14 cd03865 M14_CPE_H Peptidase M1 97.6 9.4E-05 2E-09 87.4 6.5 67 327-395 327-394 (402)
15 cd03864 M14_CPN Peptidase M14 97.6 0.00011 2.3E-09 87.0 6.7 67 326-394 316-383 (392)
16 cd03863 M14_CPD_II The second 97.4 0.00025 5.5E-09 83.5 7.1 86 851-943 290-375 (375)
17 cd03868 M14_CPD_I The first ca 97.4 0.00022 4.8E-09 84.5 6.0 68 326-394 296-364 (372)
18 PF07210 DUF1416: Protein of u 97.3 0.00062 1.3E-08 61.3 6.1 56 222-294 9-64 (85)
19 PF08400 phage_tail_N: Prophag 97.2 0.00088 1.9E-08 66.7 7.2 67 326-393 3-80 (134)
20 cd03866 M14_CPM Peptidase M14 97.1 0.0007 1.5E-08 80.1 7.0 64 326-391 295-361 (376)
21 cd03858 M14_CP_N-E_like Carbox 97.1 0.00071 1.5E-08 80.4 6.6 59 326-385 298-357 (374)
22 PRK15036 hydroxyisourate hydro 97.1 0.00065 1.4E-08 68.6 5.2 62 127-195 28-96 (137)
23 cd03867 M14_CPZ Peptidase M14- 97.1 0.00091 2E-08 79.7 6.9 65 326-392 318-383 (395)
24 PF08400 phage_tail_N: Prophag 97.0 0.0017 3.7E-08 64.8 7.3 62 126-196 3-70 (134)
25 cd03864 M14_CPN Peptidase M14 96.9 0.0014 3E-08 77.8 6.2 83 851-941 309-391 (392)
26 cd03865 M14_CPE_H Peptidase M1 96.8 0.0021 4.6E-08 76.2 6.7 82 852-941 320-401 (402)
27 cd06245 M14_CPD_III The third 96.7 0.0024 5.2E-08 75.2 6.9 81 852-941 281-361 (363)
28 PRK15036 hydroxyisourate hydro 96.6 0.0021 4.6E-08 64.9 4.1 55 327-381 28-95 (137)
29 cd03866 M14_CPM Peptidase M14 96.6 0.0043 9.3E-08 73.5 7.3 68 126-207 295-362 (376)
30 KOG2649 Zinc carboxypeptidase 96.5 0.0045 9.7E-08 72.9 6.4 74 327-402 379-453 (500)
31 KOG0518 Actin-binding cytoskel 96.3 6.2 0.00013 51.2 35.2 196 266-479 622-845 (1113)
32 cd03869 M14_CPX_like Peptidase 96.2 0.0064 1.4E-07 72.1 6.2 64 327-392 330-394 (405)
33 cd03858 M14_CP_N-E_like Carbox 96.2 0.011 2.5E-07 70.2 8.3 58 126-196 298-355 (374)
34 PF14686 fn3_3: Polysaccharide 96.1 0.013 2.8E-07 55.6 6.4 54 326-379 3-70 (95)
35 KOG0518 Actin-binding cytoskel 96.1 2.3 5.1E-05 54.9 27.2 185 165-377 623-831 (1113)
36 cd00421 intradiol_dioxygenase 95.9 0.014 3.1E-07 59.9 6.1 53 126-186 12-80 (146)
37 PF14686 fn3_3: Polysaccharide 95.9 0.011 2.3E-07 56.2 4.7 60 127-192 4-70 (95)
38 TIGR02962 hdxy_isourate hydrox 95.8 0.011 2.4E-07 57.7 4.6 60 128-194 3-70 (112)
39 cd03868 M14_CPD_I The first ca 95.8 0.014 3E-07 69.4 6.3 82 851-940 289-371 (372)
40 COG3485 PcaH Protocatechuate 3 95.8 0.01 2.2E-07 64.7 4.7 52 325-376 72-146 (226)
41 TIGR00864 PCC polycystin catio 95.7 19 0.0004 52.1 44.4 173 443-638 1831-2022(2740)
42 PF00775 Dioxygenase_C: Dioxyg 95.2 0.03 6.4E-07 59.7 5.7 49 326-374 30-99 (183)
43 cd03464 3,4-PCD_beta Protocate 95.1 0.023 5.1E-07 61.9 4.6 48 326-373 66-137 (220)
44 cd03867 M14_CPZ Peptidase M14- 95.0 0.037 8E-07 66.2 6.2 79 854-940 314-394 (395)
45 PF11974 MG1: Alpha-2-macroglo 94.9 0.046 9.9E-07 52.2 5.4 36 144-179 24-60 (97)
46 TIGR02422 protocat_beta protoc 94.7 0.034 7.4E-07 60.7 4.6 48 326-373 61-132 (220)
47 TIGR02465 chlorocat_1_2 chloro 94.6 0.033 7E-07 61.8 4.3 48 326-373 99-165 (246)
48 TIGR02962 hdxy_isourate hydrox 94.6 0.035 7.6E-07 54.3 3.9 54 328-381 3-70 (112)
49 cd03459 3,4-PCD Protocatechuat 94.6 0.041 8.9E-07 57.2 4.6 48 326-373 16-87 (158)
50 cd00421 intradiol_dioxygenase 94.4 0.07 1.5E-06 54.9 5.9 53 946-999 12-80 (146)
51 PF11974 MG1: Alpha-2-macroglo 94.4 0.17 3.7E-06 48.3 8.0 65 937-1003 4-70 (97)
52 PF09430 DUF2012: Protein of u 94.4 0.053 1.1E-06 54.1 4.7 51 340-391 7-61 (123)
53 TIGR02438 catachol_actin catec 94.4 0.04 8.6E-07 62.1 4.2 49 326-374 133-200 (281)
54 PF00775 Dioxygenase_C: Dioxyg 94.3 0.069 1.5E-06 57.0 5.8 68 222-290 31-100 (183)
55 cd03458 Catechol_intradiol_dio 94.3 0.046 1E-06 61.0 4.4 49 326-374 105-172 (256)
56 cd03462 1,2-CCD chlorocatechol 94.2 0.045 9.8E-07 60.6 4.3 48 326-373 100-166 (247)
57 cd03460 1,2-CTD Catechol 1,2 d 94.2 0.045 9.8E-07 61.8 4.3 49 326-374 125-192 (282)
58 cd03463 3,4-PCD_alpha Protocat 94.2 0.052 1.1E-06 57.9 4.5 48 326-373 37-107 (185)
59 TIGR02439 catechol_proteo cate 94.2 0.046 1E-06 61.8 4.2 49 326-374 129-196 (285)
60 cd03459 3,4-PCD Protocatechuat 94.2 0.07 1.5E-06 55.5 5.3 68 222-289 17-88 (158)
61 cd03461 1,2-HQD Hydroxyquinol 94.1 0.048 1E-06 61.5 4.2 49 326-374 121-188 (277)
62 cd05822 TLP_HIUase HIUase (5-h 94.1 0.07 1.5E-06 52.2 4.8 51 144-194 12-70 (112)
63 TIGR02423 protocat_alph protoc 93.7 0.073 1.6E-06 57.2 4.5 48 326-373 40-111 (193)
64 cd03463 3,4-PCD_alpha Protocat 93.7 0.09 2E-06 56.1 5.1 65 222-288 38-107 (185)
65 COG3485 PcaH Protocatechuate 3 93.7 0.12 2.7E-06 56.5 6.2 62 125-194 72-151 (226)
66 COG2351 Transthyretin-like pro 93.7 0.073 1.6E-06 51.5 3.9 61 127-194 10-78 (124)
67 PF09430 DUF2012: Protein of u 93.6 0.12 2.6E-06 51.6 5.6 56 146-206 5-61 (123)
68 TIGR02438 catachol_actin catec 93.4 0.11 2.4E-06 58.6 5.4 78 948-1026 135-228 (281)
69 cd05821 TLP_Transthyretin Tran 93.4 0.093 2E-06 51.8 4.2 60 128-194 9-76 (121)
70 TIGR02465 chlorocat_1_2 chloro 93.2 0.16 3.4E-06 56.5 6.1 55 126-188 99-167 (246)
71 PF10670 DUF4198: Domain of un 93.2 0.15 3.2E-06 55.5 6.0 64 219-293 149-212 (215)
72 TIGR02422 protocat_beta protoc 93.1 0.16 3.4E-06 55.7 6.0 55 126-188 61-134 (220)
73 cd05469 Transthyretin_like Tra 93.0 0.11 2.5E-06 50.6 4.2 51 144-194 12-70 (113)
74 cd03458 Catechol_intradiol_dio 92.9 0.18 4E-06 56.3 6.1 56 126-189 105-174 (256)
75 TIGR02423 protocat_alph protoc 92.8 0.19 4.1E-06 54.0 6.0 53 126-186 40-111 (193)
76 PF08308 PEGA: PEGA domain; I 92.7 0.16 3.6E-06 45.2 4.5 50 340-394 10-59 (71)
77 TIGR02439 catechol_proteo cate 92.7 0.19 4.1E-06 57.0 6.0 55 126-188 129-197 (285)
78 cd03460 1,2-CTD Catechol 1,2 d 92.7 0.18 3.9E-06 57.1 5.8 55 126-188 125-193 (282)
79 cd03462 1,2-CCD chlorocatechol 92.6 0.21 4.5E-06 55.5 6.0 55 126-188 100-168 (247)
80 smart00095 TR_THY Transthyreti 92.5 0.15 3.2E-06 50.4 4.2 60 128-194 6-73 (121)
81 cd03461 1,2-HQD Hydroxyquinol 92.5 0.21 4.5E-06 56.5 6.0 55 126-188 121-189 (277)
82 cd03464 3,4-PCD_beta Protocate 92.3 0.21 4.5E-06 54.6 5.6 70 947-1026 67-155 (220)
83 KOG2649 Zinc carboxypeptidase 92.3 0.22 4.7E-06 59.2 6.1 65 127-207 379-443 (500)
84 PF10670 DUF4198: Domain of un 92.0 0.21 4.6E-06 54.3 5.3 57 125-190 150-211 (215)
85 PF00576 Transthyretin: HIUase 91.1 0.075 1.6E-06 52.0 0.5 57 128-191 3-68 (112)
86 COG2373 Large extracellular al 89.9 8.2 0.00018 53.9 18.2 184 144-346 316-535 (1621)
87 PF00576 Transthyretin: HIUase 89.1 0.32 6.9E-06 47.7 3.0 53 328-380 3-70 (112)
88 PF01060 DUF290: Transthyretin 88.9 0.55 1.2E-05 43.2 4.3 37 956-992 7-47 (80)
89 TIGR00864 PCC polycystin catio 88.4 1.6E+02 0.0035 43.3 33.4 106 448-578 1751-1864(2740)
90 KOG3006 Transthyretin and rela 88.3 1.4 2.9E-05 42.9 6.5 62 125-193 20-89 (132)
91 PF08308 PEGA: PEGA domain; I 88.0 0.57 1.2E-05 41.7 3.7 61 874-944 10-70 (71)
92 cd03457 intradiol_dioxygenase_ 87.8 1 2.2E-05 48.3 6.1 57 126-189 27-104 (188)
93 cd05822 TLP_HIUase HIUase (5-h 87.8 0.95 2.1E-05 44.4 5.3 90 859-949 2-109 (112)
94 PF01060 DUF290: Transthyretin 87.5 0.9 2E-05 41.7 4.8 55 224-290 1-55 (80)
95 COG1470 Predicted membrane pro 87.4 65 0.0014 39.0 20.7 80 542-631 224-308 (513)
96 cd05821 TLP_Transthyretin Tran 87.4 0.73 1.6E-05 45.7 4.2 57 223-291 9-71 (121)
97 COG1470 Predicted membrane pro 87.3 34 0.00074 41.2 18.4 134 856-1002 185-340 (513)
98 cd03869 M14_CPX_like Peptidase 87.3 0.82 1.8E-05 54.6 5.5 81 851-939 322-403 (405)
99 PF02369 Big_1: Bacterial Ig-l 85.8 1.5 3.3E-05 42.1 5.5 55 326-380 25-91 (100)
100 PF02369 Big_1: Bacterial Ig-l 85.4 2.3 5E-05 40.8 6.5 60 128-195 27-93 (100)
101 smart00095 TR_THY Transthyreti 85.3 1 2.2E-05 44.6 4.1 54 226-291 9-68 (121)
102 COG2351 Transthyretin-like pro 85.1 1.1 2.4E-05 43.7 4.0 54 327-380 10-77 (124)
103 PRK15235 outer membrane fimbri 84.4 6.9 0.00015 51.5 12.4 111 890-1001 668-784 (814)
104 smart00634 BID_1 Bacterial Ig- 82.5 2.9 6.3E-05 39.3 5.8 54 327-380 21-85 (92)
105 cd03457 intradiol_dioxygenase_ 81.4 2 4.3E-05 46.1 4.8 51 859-910 28-100 (188)
106 cd05469 Transthyretin_like Tra 81.4 3.3 7.2E-05 40.6 5.8 90 859-949 2-110 (113)
107 PF07495 Y_Y_Y: Y_Y_Y domain; 81.1 2.3 4.9E-05 37.0 4.3 23 533-555 25-48 (66)
108 cd00222 CollagenBindB Collagen 79.9 35 0.00076 36.7 13.4 127 51-197 22-172 (187)
109 PF01190 Pollen_Ole_e_I: Polle 79.6 2.3 4.9E-05 40.5 4.0 35 955-989 16-54 (97)
110 COG2373 Large extracellular al 79.4 19 0.00041 50.5 14.0 169 860-1029 307-507 (1621)
111 cd00222 CollagenBindB Collagen 78.5 37 0.0008 36.5 13.1 121 145-291 19-162 (187)
112 PF10794 DUF2606: Protein of u 77.7 4 8.6E-05 39.8 4.9 53 327-379 43-108 (131)
113 COG5266 CbiK ABC-type Co2+ tra 77.6 4.7 0.0001 44.7 6.1 59 125-192 171-242 (264)
114 PF07495 Y_Y_Y: Y_Y_Y domain; 75.3 3.1 6.7E-05 36.2 3.4 18 275-292 30-47 (66)
115 PRK15294 putative fimbrial out 74.8 18 0.0004 47.9 11.8 108 891-1001 701-814 (845)
116 COG5266 CbiK ABC-type Co2+ tra 74.4 6.9 0.00015 43.4 6.3 72 220-294 171-242 (264)
117 KOG4802 Adhesion-type protein 74.4 8.9 0.00019 45.0 7.5 106 897-1007 209-337 (516)
118 PF11589 DUF3244: Domain of un 74.4 2.5 5.3E-05 41.0 2.7 49 50-98 46-99 (106)
119 PRK15207 long polar fimbrial o 74.1 22 0.00048 47.0 12.2 108 891-1001 698-811 (842)
120 COG3188 FimD P pilus assembly 74.0 21 0.00046 47.0 11.8 108 890-1001 693-806 (835)
121 PF00041 fn3: Fibronectin type 71.5 12 0.00026 33.4 6.4 49 957-1005 27-77 (85)
122 smart00634 BID_1 Bacterial Ig- 69.0 8.1 0.00017 36.3 4.8 62 855-918 17-85 (92)
123 PF12866 DUF3823: Protein of u 68.7 25 0.00055 38.8 9.2 59 320-378 16-86 (222)
124 PRK15298 fimbrial outer membra 67.8 36 0.00077 45.2 12.0 109 890-1001 706-820 (848)
125 PRK15223 pilin outer membrane 67.2 36 0.00079 45.1 11.9 108 890-1001 695-808 (836)
126 KOG3006 Transthyretin and rela 66.4 21 0.00046 35.0 6.9 91 858-949 21-129 (132)
127 PRK15310 fimbrial outer membra 62.2 39 0.00085 43.9 10.2 36 326-363 786-821 (895)
128 TIGR03503 conserved hypothetic 61.0 2.9E+02 0.0063 33.0 16.4 48 533-590 168-219 (374)
129 PF06427 UDP-g_GGTase: UDP-glu 60.9 19 0.00042 39.4 6.5 71 84-161 126-201 (211)
130 PF12866 DUF3823: Protein of u 60.9 90 0.002 34.6 11.7 118 120-244 16-154 (222)
131 PF10794 DUF2606: Protein of u 60.2 20 0.00044 35.1 5.6 74 113-194 29-110 (131)
132 KOG1692 Putative cargo transpo 57.9 24 0.00052 37.6 6.2 61 50-111 53-113 (201)
133 PF01190 Pollen_Ole_e_I: Polle 56.7 14 0.00031 35.0 4.1 38 783-825 17-54 (97)
134 PRK15255 fimbrial outer membra 55.2 80 0.0017 41.9 11.9 107 892-1002 690-802 (829)
135 PRK15198 outer membrane usher 53.8 88 0.0019 41.7 12.0 105 891-1001 715-825 (860)
136 PF05688 DUF824: Salmonella re 50.9 24 0.00053 29.2 3.9 29 859-887 14-42 (47)
137 PRK12813 flgD flagellar basal 50.9 29 0.00062 38.4 5.8 43 146-189 121-172 (223)
138 PF10179 DUF2369: Uncharacteri 50.4 1.8E+02 0.0038 33.8 12.1 112 983-1101 14-146 (300)
139 PF13860 FlgD_ig: FlgD Ig-like 47.4 24 0.00052 32.3 3.9 44 146-189 22-76 (81)
140 PRK15193 outer membrane usher 46.4 1.3E+02 0.0028 40.2 11.9 107 889-1001 733-845 (876)
141 PF13750 Big_3_3: Bacterial Ig 46.4 2.5E+02 0.0055 29.3 11.7 106 444-555 7-132 (158)
142 PRK15304 putative fimbrial out 45.7 83 0.0018 41.6 9.8 107 267-374 658-769 (801)
143 PRK15284 putative fimbrial out 45.5 1.4E+02 0.0031 39.9 12.0 106 891-1001 706-817 (881)
144 PRK15207 long polar fimbrial o 44.9 1E+02 0.0023 40.9 10.6 108 267-375 697-811 (842)
145 PRK15223 pilin outer membrane 44.7 1E+02 0.0023 40.9 10.6 106 267-375 695-808 (836)
146 PF14347 DUF4399: Domain of un 44.0 34 0.00073 32.1 4.3 48 331-379 25-72 (87)
147 PF11008 DUF2846: Protein of u 43.4 52 0.0011 32.4 5.8 40 71-111 55-94 (117)
148 PRK15248 fimbrial outer membra 43.3 1.4E+02 0.0031 39.7 11.6 106 891-1001 710-821 (853)
149 PRK15284 putative fimbrial out 43.3 1.1E+02 0.0023 41.0 10.3 107 268-375 706-817 (881)
150 PF01835 A2M_N: MG2 domain; I 43.2 40 0.00087 31.8 4.8 41 150-190 37-85 (99)
151 PRK09828 putative fimbrial out 42.8 1.5E+02 0.0033 39.6 11.7 106 891-1001 718-829 (865)
152 PRK15273 putative fimbrial out 42.1 1.8E+02 0.0039 39.0 12.1 106 891-1001 683-794 (881)
153 PF11589 DUF3244: Domain of un 42.1 52 0.0011 31.8 5.5 58 947-1005 33-95 (106)
154 PRK15304 putative fimbrial out 41.8 1.5E+02 0.0033 39.2 11.4 105 891-1000 659-769 (801)
155 PF13953 PapC_C: PapC C-termin 41.5 46 0.00099 29.5 4.6 45 331-375 2-49 (68)
156 PF09912 DUF2141: Uncharacteri 41.5 31 0.00068 33.8 3.9 36 531-572 38-73 (112)
157 PF06488 L_lac_phage_MSP: Lact 41.2 2.3E+02 0.0051 30.5 10.3 39 433-479 257-297 (301)
158 PRK15248 fimbrial outer membra 41.1 99 0.0022 41.2 9.6 108 267-375 709-821 (853)
159 COG3188 FimD P pilus assembly 40.6 2.4E+02 0.0053 37.5 12.8 108 266-374 692-805 (835)
160 smart00060 FN3 Fibronectin typ 40.6 39 0.00084 28.5 4.1 25 980-1004 53-77 (83)
161 PRK15213 fimbrial outer membra 40.3 2E+02 0.0043 38.2 12.1 104 890-999 665-774 (797)
162 PRK06655 flgD flagellar basal 40.0 34 0.00074 37.9 4.3 44 146-189 123-177 (225)
163 PF13860 FlgD_ig: FlgD Ig-like 39.3 32 0.00069 31.5 3.4 43 51-93 24-77 (81)
164 PRK15213 fimbrial outer membra 39.1 1.7E+02 0.0037 38.7 11.3 105 267-373 665-774 (797)
165 PF09294 Interfer-bind: Interf 38.8 1E+02 0.0023 29.1 7.1 82 920-1003 3-86 (106)
166 PF10179 DUF2369: Uncharacteri 38.0 1.3E+02 0.0027 34.9 8.5 76 923-1002 57-146 (300)
167 PRK15310 fimbrial outer membra 37.9 1.4E+02 0.0031 39.1 9.7 120 854-989 692-822 (895)
168 PF01835 A2M_N: MG2 domain; I 37.6 76 0.0016 29.9 5.8 24 354-377 57-85 (99)
169 PF04234 CopC: CopC domain; I 36.8 30 0.00066 32.9 2.9 50 47-96 28-85 (97)
170 PRK12813 flgD flagellar basal 36.7 74 0.0016 35.2 6.2 54 495-554 113-173 (223)
171 KOG3306 Predicted membrane pro 36.6 35 0.00076 35.6 3.4 41 343-385 13-56 (185)
172 PRK15273 putative fimbrial out 36.5 1.6E+02 0.0034 39.5 10.3 107 268-375 683-794 (881)
173 PF09154 DUF1939: Domain of un 36.4 44 0.00096 28.8 3.5 36 148-186 20-55 (57)
174 PRK06655 flgD flagellar basal 34.8 35 0.00077 37.8 3.4 43 51-93 125-178 (225)
175 PF04234 CopC: CopC domain; I 34.7 48 0.0011 31.5 3.9 30 174-205 63-96 (97)
176 PRK15217 fimbrial outer membra 33.9 1.8E+02 0.0039 38.7 10.2 107 266-375 688-801 (826)
177 PF14900 DUF4493: Domain of un 33.5 3.7E+02 0.0079 29.8 11.3 43 903-945 61-110 (235)
178 PRK15217 fimbrial outer membra 32.0 3.2E+02 0.0069 36.4 12.0 108 889-1001 688-801 (826)
179 PF13115 YtkA: YtkA-like 31.9 66 0.0014 29.5 4.2 43 333-375 28-85 (86)
180 TIGR03503 conserved hypothetic 31.9 2.2E+02 0.0047 34.1 9.3 56 903-958 180-254 (374)
181 PRK15294 putative fimbrial out 31.7 2E+02 0.0044 38.3 10.2 108 267-375 700-814 (845)
182 PF11008 DUF2846: Protein of u 31.7 53 0.0011 32.3 3.8 41 533-581 55-95 (117)
183 KOG4221 Receptor mediating net 31.4 1.1E+03 0.024 32.5 16.0 119 976-1102 566-693 (1381)
184 PF06030 DUF916: Bacterial pro 31.4 2.4E+02 0.0052 28.2 8.3 53 890-944 51-104 (121)
185 PF04151 PPC: Bacterial pre-pe 31.2 76 0.0016 28.0 4.4 41 53-93 25-70 (70)
186 PRK15316 RatA-like protein; Pr 31.0 84 0.0018 43.9 6.3 45 858-902 1595-1668(2683)
187 PF03272 Enhancin: Viral enhan 30.6 64 0.0014 42.3 5.2 82 858-944 445-529 (775)
188 KOG2740 Clathrin-associated pr 30.0 2.3E+02 0.0049 33.4 8.7 124 857-989 288-417 (418)
189 PF04151 PPC: Bacterial pre-pe 29.9 81 0.0017 27.8 4.3 19 894-912 49-67 (70)
190 PRK09619 flgD flagellar basal 29.4 65 0.0014 35.6 4.3 42 51-93 122-171 (218)
191 PF13754 Big_3_4: Bacterial Ig 29.3 93 0.002 26.3 4.3 28 435-462 5-35 (54)
192 PRK12633 flgD flagellar basal 29.2 69 0.0015 35.7 4.5 44 146-189 126-180 (230)
193 PRK14081 triple tyrosine motif 28.9 1.4E+03 0.03 29.6 39.8 198 348-555 425-648 (667)
194 PRK05842 flgD flagellar basal 28.8 73 0.0016 36.7 4.6 42 148-189 165-219 (295)
195 PRK12634 flgD flagellar basal 28.2 63 0.0014 35.8 3.9 43 51-93 121-174 (221)
196 PF14289 DUF4369: Domain of un 27.4 3.4E+02 0.0074 25.3 8.5 49 125-186 12-64 (106)
197 KOG1690 emp24/gp25L/p24 family 27.2 1.3E+02 0.0028 32.5 5.7 63 147-209 63-129 (215)
198 PRK09828 putative fimbrial out 27.1 2.5E+02 0.0054 37.6 9.9 105 268-375 718-829 (865)
199 PRK15298 fimbrial outer membra 26.9 3.2E+02 0.007 36.5 10.8 108 267-375 706-820 (848)
200 TIGR03000 plancto_dom_1 Planct 26.7 61 0.0013 29.5 2.8 36 341-376 11-49 (75)
201 PRK10301 hypothetical protein; 26.5 96 0.0021 31.1 4.6 49 48-96 55-112 (124)
202 PRK15235 outer membrane fimbri 26.3 3E+02 0.0065 36.6 10.3 108 267-375 668-784 (814)
203 PRK12633 flgD flagellar basal 25.9 74 0.0016 35.4 4.0 43 51-93 128-181 (230)
204 PF13750 Big_3_3: Bacterial Ig 25.5 5E+02 0.011 27.1 9.9 31 980-1010 102-138 (158)
205 PF03785 Peptidase_C25_C: Pept 25.0 1.8E+02 0.0039 27.0 5.5 47 147-196 24-75 (81)
206 PRK15193 outer membrane usher 24.7 3.3E+02 0.0071 36.6 10.3 105 267-375 734-845 (876)
207 TIGR03000 plancto_dom_1 Planct 24.1 1.4E+02 0.003 27.3 4.6 55 976-1034 21-75 (75)
208 PRK09619 flgD flagellar basal 23.9 1.7E+02 0.0036 32.4 6.2 13 448-460 160-172 (218)
209 PF12580 TPPII: Tripeptidyl pe 23.9 1.3E+02 0.0029 32.5 5.3 81 3-95 37-124 (194)
210 PF09154 DUF1939: Domain of un 23.7 1.1E+02 0.0024 26.4 3.7 37 50-89 19-55 (57)
211 PF00041 fn3: Fibronectin type 23.6 2.2E+02 0.0049 24.9 6.2 44 508-555 32-76 (85)
212 smart00557 IG_FLMN Filamin-typ 23.5 1E+02 0.0022 28.9 4.0 41 52-93 32-76 (93)
213 PRK12812 flgD flagellar basal 23.3 2.2E+02 0.0049 32.3 7.2 44 146-189 138-192 (259)
214 PF03785 Peptidase_C25_C: Pept 23.1 1.8E+02 0.0038 27.0 5.0 42 50-93 24-69 (81)
215 KOG1692 Putative cargo transpo 22.7 94 0.002 33.3 3.7 45 147-191 53-97 (201)
216 PF14289 DUF4369: Domain of un 22.5 2.2E+02 0.0048 26.7 6.2 38 52-90 24-65 (106)
217 PF10577 UPF0560: Uncharacteri 21.8 1E+02 0.0022 39.9 4.4 57 782-848 11-68 (807)
218 PF10411 DsbC_N: Disulfide bon 21.2 1.5E+02 0.0032 25.4 4.1 37 951-991 13-49 (57)
219 PF13754 Big_3_4: Bacterial Ig 21.0 1.1E+02 0.0024 25.9 3.2 41 69-109 6-50 (54)
220 PF06488 L_lac_phage_MSP: Lact 21.0 1.3E+02 0.0029 32.3 4.4 42 155-196 247-291 (301)
221 PRK12812 flgD flagellar basal 20.9 1.1E+02 0.0024 34.7 4.1 43 51-93 140-193 (259)
222 KOG3306 Predicted membrane pro 20.4 1.1E+02 0.0025 32.0 3.7 47 58-107 15-61 (185)
223 PRK05842 flgD flagellar basal 20.4 98 0.0021 35.7 3.6 41 52-92 166-219 (295)
224 cd00063 FN3 Fibronectin type 3 20.1 95 0.0021 26.9 2.9 24 982-1005 55-78 (93)
225 PF13753 SWM_repeat: Putative 20.0 1.4E+03 0.03 26.4 20.4 38 150-189 75-117 (317)
No 1
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-224 Score=1921.73 Aligned_cols=1129 Identities=39% Similarity=0.671 Sum_probs=1031.4
Q ss_pred ccceeeeeeeeeeeeeecccceecccceeeecchhhccccccCcccccceeEEEEEecccccccccccCC-CceEEEEee
Q 000982 4 RDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAP-NGYYFIPVY 82 (1201)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~gcgGfv~~~~~~~~~~k~sd~~i~lsgv~V~L~~~~G~~~~~t~t~~-nG~y~i~~l 82 (1201)
--|+..||++++..+.++.|+|+|||||| |||++||||.++|+|+|.+|.+|++|+|+| |||||||+|
T Consensus 5 ~~~~vvlLI~ls~~a~~sed~VvgCgGfV-----------kSd~eidyS~ievkL~Tk~G~lKd~tdcaPsNGYfmIPvY 73 (1165)
T KOG1948|consen 5 CHMGVVLLILLSLLAPGSEDNVVGCGGFV-----------KSDSEIDYSQIEVKLLTKEGHLKDETDCAPSNGYFMIPVY 73 (1165)
T ss_pred eeehhhhhhhhhcccCCceeeEEecccee-----------ecCCccceeeEEEEEEeeccccccccccCCCCceEEEEEe
Confidence 34778888889999999999999999999 489999999999999999999999999999 999999999
Q ss_pred ecceEEEEEcCCCCCCcCCCceeEEEcC--CCCCCCcceeEEEeeeEEeeeEeeeecCccccccCCCCcceeEEEeccCC
Q 000982 83 DKGSFVIKVNGPEGWSWNPDKVAVTVDD--TGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG 160 (1201)
Q Consensus 83 ~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~--~~~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g 160 (1201)
++|+|.|++++|.||+|+|++++++||+ |.|+++.||||.|+||+|+|+|..+. +.+++||.|+|++..+
T Consensus 74 dKGdyiLkIspP~GwsfePd~Vel~vDGktd~Cs~n~DinFhftGFsv~GkVlgaa--------ggGpagV~velrs~e~ 145 (1165)
T KOG1948|consen 74 DKGDYILKISPPAGWSFEPDSVELKVDGKTDACSLNEDINFHFTGFSVRGKVLGAA--------GGGPAGVLVELRSQED 145 (1165)
T ss_pred cCCcEEEEecCCCCccccCceEEEEeccccccccCCCceEEEEeeeeEeeEEeecc--------CCCcccceeecccccC
Confidence 9999999999999999999999999997 79999999999999999999999863 4799999999997754
Q ss_pred CeeeeeeecCccceeeeeecCcceeeeccCCCcEEEEeeeeEEEeeccCceeeeeEeecCcccceEEEeecCceEEEEEE
Q 000982 161 DLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIY 240 (1201)
Q Consensus 161 ~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~~~~~~~~~~V~v~~~~~~v~~~l~i~G~~vsG~V~~~g~Pl~Ga~V~ 240 (1201)
.++++.|+++|.|.|.+++||+|.|.++|+.|.+..++++.|++...+..+++.|.+.||++.|+|++++.|+.|+.++
T Consensus 146 -~iast~T~~~Gky~f~~iiPG~Yev~ashp~w~~~~ag~tvvev~~a~~~va~~f~VsGydl~gsv~s~s~P~~gv~~~ 224 (1165)
T KOG1948|consen 146 -PIASTKTEDGGKYEFRNIIPGKYEVSASHPAWECISAGKTVVEVKNAPVVVAPNFKVSGYDLEGSVRSESMPFVGVVMT 224 (1165)
T ss_pred -cceeeEecCCCeEEEEecCCCceEEeccCcceeEeecCcEEEEeCCCccccCCceEEEeeeeEEEEeccCCcccceEEE
Confidence 4899999999999999999999999999999999877777888887777788999999999999999999999999999
Q ss_pred EEeCCcceeecCCCCCC-Cc----c-ccccceeeeecCCcceeeceecccceeeeeeccccceEEeeCCCceeeEEeeee
Q 000982 241 LYSDDVGKVDCPQGSGN-AL----G-ERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQH 314 (1201)
Q Consensus 241 L~~~~~~~~~c~~g~~~-~~----~-~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~ 314 (1201)
|+..+.....|.+...+ +| . ....+|.+++|++|+|.|.++|+|.|+|.+.|.+++..|+++|..++++|++++
T Consensus 225 l~s~~v~~~dvpkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGkY~l~a~y~ge~~~fdvSP~~l~v~Vehd~ 304 (1165)
T KOG1948|consen 225 LYSTSVIDLDVPKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGKYYLAASYVGEPKSFDVSPNPLKVVVEHDH 304 (1165)
T ss_pred EEEcccccccCCccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCCEEEEEEecCCceEEEeCCCceeEEEeccc
Confidence 99987666665554333 21 1 224689999999999999999999999999999999999999999999999999
Q ss_pred eeccceeEEeeeeeeeEEeeC-CCcceeeEEEEEcCcccccccCCceeeeee-eecceeEEeeeeeeeeeccceeeEeec
Q 000982 315 VTVPEKFQVTGFSVGGRVVDE-NDMGVEGVKILVDGHERSITDRDGYYKLDQ-VTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (1201)
Q Consensus 315 ~~l~~~f~~~g~sv~G~V~d~-~G~pl~Ga~V~l~G~~~~~TDadG~y~~~~-L~pG~Y~I~~~~~~y~~~~~~~v~v~p 392 (1201)
+++++.|+++||+++|||++. +|.|++||+|.+||+..+.||++|+|+++| +..|+|+|+++++||+|++.. +++.|
T Consensus 305 lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvngk~~~kTdaqGyykLen~~t~gtytI~a~kehlqFstv~-~kv~p 383 (1165)
T KOG1948|consen 305 LQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNGKSGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTVH-AKVKP 383 (1165)
T ss_pred eeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcCcccceEcccceEEeeeeeccCcEEEEEeccceeeeeEE-EEecC
Confidence 999999999999999999997 999999999999999999999999999999 788999999999999999995 89999
Q ss_pred CCccccccceeeeeeeeeEEEecCCceeEEEeccCCCCCCcccccccCC-CCeEEEeCCCceeeeeeecCCCCCcceeec
Q 000982 393 NMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNN-GNFCFEVPPGEYRLSAMAATPESSSGILFL 471 (1201)
Q Consensus 393 ~~~~i~dI~~~~~~v~G~V~~~~~~~~a~VtL~~~~~~~~~~~t~Td~~-G~f~f~L~PG~Y~v~~~~~~~~~~~G~~~~ 471 (1201)
++++++||++..|+|||+|.... .++.+.|+......+....+|++. |+|||.++||.|+|+++.++++.++|++|.
T Consensus 384 ntasLpdI~a~~fdiCGqV~~~~--k~~nv~lt~~~s~~k~s~~~t~etdGsfCf~vppG~ytievl~~ta~~aagl~l~ 461 (1165)
T KOG1948|consen 384 NTASLPDITAQKFDICGQVEKSE--KGVNVKLTFTRSDDKRSLEITPETDGSFCFPVPPGLYTIEVLDKTASGAAGLLLT 461 (1165)
T ss_pred CccccccccccceeeeeEEEEcc--ccceeEEEEccCccccccccccccCCceeEEcCCccEEEEEeccCcccccccEee
Confidence 99999999999999999998665 444555543222223334444444 999999999999999999999999999999
Q ss_pred CccceEEe-eCccccchhhhheeeeccceeeccccCCcEEEEEEeecccCCCCceeeEEEeecCCcceeecccCCcceEE
Q 000982 472 PPYADVVV-KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRL 550 (1201)
Q Consensus 472 p~~~~V~V-~~p~~~I~f~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v 550 (1201)
|..++++| ++|+++|.|+|++++++|.|+|++.|+ .+.|+|+....+ ....++++.+|..+.|+|+|++||+|++
T Consensus 462 P~~~~veV~~~pv~ni~Fsqfranv~g~lsCl~tCg-~a~vtlq~la~G---q~~~~~vk~td~~~~ftF~nilPGkY~~ 537 (1165)
T KOG1948|consen 462 PRLLEVEVLKNPVTNIRFSQFRANVNGHLSCLGTCG-TATVTLQLLAAG---QTLVRSVKGTDESSVFTFENILPGKYSA 537 (1165)
T ss_pred eeeeeEEeecCcccceehhhhhhccceEEEeccCCC-ceeEEEEecccC---CcceeeEEEEeeccEEEeeccCCcceEE
Confidence 99999999 689999999999999999999999999 789999877322 1356667789999999999999999999
Q ss_pred EEeecCCccccCCCceeeeeeeeeeeeccCccceeEEEEeeeEEEEeeeccccceeecCCCCeee---eeeecCceeEEE
Q 000982 551 EVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVP---LKVKKGSQHICV 627 (1201)
Q Consensus 551 ~~~~~~~~~~~~~~~~cw~~~~~~v~V~~~~~~~~~F~q~Gy~~~i~~sh~v~~~~~~~~~~~~~---~~l~kG~~~~c~ 627 (1201)
++. |+++|||+.++++++|.++++++++|+|+|||++|++||+++++|+|++|+..+ ++|.||.|+||+
T Consensus 538 ~i~--------d~~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~iisSH~a~~e~~h~dg~~en~~~lki~kgvn~iCv 609 (1165)
T KOG1948|consen 538 RID--------DNGRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQIISSHPAEIEWSHADGKQENGKTLKIGKGVNSICV 609 (1165)
T ss_pred Eec--------cCCCceeecceEEEEeecccccccceeeccEEEEEEecCceeeEEecCCCCCCCcceEEecCcceEEEc
Confidence 998 478999999999999999999999999999999999999999999999987665 999999999999
Q ss_pred eCCceeeeEeecceeeecCCeeeeeCCCCceeeeecceeeeeeeeEEeecCCCccccCCccEEEEEEcCCCCccccccce
Q 000982 628 ESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTAT 707 (1201)
Q Consensus 628 ~~~G~y~~~~~~sc~~f~~~~~~~~t~~~~~i~l~~~~~~~~G~i~~~~~~~~~~~~~~~~~~v~~~~~~g~~i~~~~~~ 707 (1201)
++||.|.+.+ .+||.|+.+++++++..+.+.+++++..+++|.|.++..+... ...++++++++++..+.+|+...
T Consensus 610 ~kpGs~~~~~-~sc~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~-~s~~~k~v~e~~~~k~evit~~a-- 685 (1165)
T KOG1948|consen 610 PKPGSYDVSL-GSCYTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAA-VSIREKFVVEIQDIKSEVITREA-- 685 (1165)
T ss_pred cCCccceeec-cceeecccCCceeecCCCcchHhHhhhhhhccceeeeeccccc-ccchhhhhhhhhhhcccccCccc--
Confidence 9999999997 9999999999999999999999999999999999887755321 25567889999999998885322
Q ss_pred ecCCCCCCcceeEEEEEEeeccCCceeEeecCCCCCcceeEEeeeeceeEEEecCCceeeeccccceeeeEEecccCCCC
Q 000982 708 LTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPL 787 (1201)
Q Consensus 708 ~~~~~~~~~~~~~y~~~~~a~~g~~~~v~P~s~~~~~~~~llf~P~~~~vtv~~~~c~~~~~~f~~~~G~~i~G~v~p~l 787 (1201)
+..+-| ++++.|+|.+||++||+|+|+|+| |.|||||+++++.|+++ |+..+++|.+++|+||+|+|+|+|
T Consensus 686 -~~~avD-~G~f~yey~twas~gekl~ivPss------k~lLFyP~s~eavvS~d-C~~~a~~f~g~rGLfL~Gsi~Pal 756 (1165)
T KOG1948|consen 686 -QVPAVD-NGRFTYEYPTWASSGEKLVIVPSS------KLLLFYPTSKEAVVSGD-CIENAVKFNGFRGLFLDGSIKPAL 756 (1165)
T ss_pred -cccccc-CCcceEechhhcCCCceEEEeecc------ceeeecCCceEEEEecc-cchhheeecceeeEEEcceeccCC
Confidence 222222 278999999999999999999998 89999999999999876 999999999999999999999999
Q ss_pred CccEEEEEEecCccccccccceEEEEeeeCCCcceeccccccCccceeeecCCccceeeecC--CcccccccccEEEEEE
Q 000982 788 SGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGP--NSFSCQKLSQISVRIY 865 (1201)
Q Consensus 788 ~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L~~~~~y~i~a~k~gy~~~~~~~--~~f~~~~l~~i~v~v~ 865 (1201)
+||+|+|+.++++ ++.+++.|+++|.|++|||+.+..|.++|+||||+|++.++ ++|++++|++|+++++
T Consensus 757 ega~Ikis~kkds--------~~~Iev~T~~~Gafk~GPl~~dl~yd~tA~kegyvft~~~~t~~sfqa~kl~~vsv~vk 828 (1165)
T KOG1948|consen 757 EGAVIKISLKKDS--------DVVIEVITNKDGAFKIGPLKRDLDYDITATKEGYVFTPTSPTPGSFQAVKLSQVSVKVK 828 (1165)
T ss_pred CCcEEEEEecCCC--------ceeEEEEEcCCCcEEecccccccccceeeccCceEEecCCCCccceeeeeeeEEEEEEe
Confidence 9999999999887 78999999999999999999999999999999999999983 8999999999999999
Q ss_pred ecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCceeEecCCCcceeEEEEEEEEE
Q 000982 866 SKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVA 945 (1201)
Q Consensus 866 ~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~ 945 (1201)
|++ ++||+||||||||+++||+|++|+++|.++|++|+||+||||||||||+|+|+++||+|+|||+.+++|+|+|+|
T Consensus 829 dea--~q~LpgvLLSLsGg~~yRsNlvtgdng~~nf~sLsPgqyylRpmlKEykFePst~mIevkeGq~~~vvl~gkRvA 906 (1165)
T KOG1948|consen 829 DEA--TQPLPGVLLSLSGGKDYRSNLVTGDNGHKNFVSLSPGQYYLRPMLKEYKFEPSTSMIEVKEGQHENVVLKGKRVA 906 (1165)
T ss_pred ccC--CCcCCcEEEEEecCcchhhccccCCCceeEEeecCcchhhhhhHHHhcCcCCCceeEEeccCceEEEEEEEEEEE
Confidence 996 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeeEEeecCCCCCceeEEEeecc-cceeeeeeecCCCceEeecccCCceEEEEEEEecCCCcccccccCCceEEEEe
Q 000982 946 YSATGTITLLSGQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKV 1024 (1201)
Q Consensus 946 ~s~~G~V~~~~g~p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~~~~~~P~~~~v~~ 1024 (1201)
|||||+|.+|||+|++||.+||++++ ..++||+|||+||+||||||+|||.|.|+++++. ++++|||++|++++|+|
T Consensus 907 ySayGtvssLsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~--~n~~iers~P~s~tv~v 984 (1165)
T KOG1948|consen 907 YSAYGTVSSLSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYA--DNSPIERSFPRSFTVSV 984 (1165)
T ss_pred EEeeeehhhccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeecc--CCCcccccCCceEEEEe
Confidence 99999999999999999999999998 7899999999999999999999999999999875 38999999999999999
Q ss_pred ccCccccceEEEeeccceeEEEEEeeccchhccccceEEEE-eccCCccceeEEEeeccccceeecCCCCc--ceeeEec
Q 000982 1025 GSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEI-KSASDTSKVESVISLPMSNFFQVKDLPKG--KHLLQLR 1101 (1201)
Q Consensus 1025 ~~~d~~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l-~~~~~~~~~~~~~~~~~~~~f~~~~l~~~--~y~v~~~ 1101 (1201)
+++||+|+||+||++++++||+|+|+++. .|+++++||.+ |+++++++|+++. +++ .+++||+||++ +|+|+|+
T Consensus 985 gneDv~glnf~af~q~kttdit~~V~~~~-ne~l~sl~vv~yKs~nddspv~sv~-~gq-l~~ffp~l~~dg~~yvV~l~ 1061 (1165)
T KOG1948|consen 985 GNEDVKGLNFMAFIQAKTTDITVEVGMDT-NEELQSLRVVIYKSNNDDSPVASVV-AGQ-LLHFFPNLPRDGVEYVVRLE 1061 (1165)
T ss_pred cccccCCceEEEEeccceEEEEEEEcccc-cccccceEEEEEecCCCCCcceEEe-ccc-eeeeccccCCCCceEEEEEe
Confidence 99999999999999999999999999987 46677888776 9999999999954 444 77888888886 9999999
Q ss_pred cCCCCcccccccceEEEeccccc-eeEEeeeeeeeecccccccCCCCcccceehhhhheeee---------ecccchhHH
Q 000982 1102 SSLPSSTHRFESEIIEVDLEKNA-QIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLF---------ISMPRLKDL 1171 (1201)
Q Consensus 1102 s~l~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 1171 (1201)
|+||.++|+|+ ++ .|.|.. ++|+ .|.|.|+||..++|++|++++||||+++|+++| +++|+++|+
T Consensus 1062 Stlp~~~y~yk--lp--~fva~~~~k~a-~l~f~p~rra~eaDi~q~s~~al~l~~lvalaffnqd~~~~lLsi~s~ld~ 1136 (1165)
T KOG1948|consen 1062 STLPPQAYAYK--LP--RFVADQAMKVA-RLPFTPSRRANEADISQGSFLALPLFVLVALAFFNQDRVLELLSIPSFLDW 1136 (1165)
T ss_pred ccCCchheeee--cc--EEEeecceEEE-EEEeCccccccccccccCcEehhHHHHHHHHHHhchhhhhhhhcchhHHHH
Confidence 99999999994 55 788876 8888 899999999999999999999999999999987 478899999
Q ss_pred HHhhcCCCCCCchhhhccccccccccccC
Q 000982 1172 YQAAMGIPTPGFIATAKKEARKPVVRKKT 1200 (1201)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1200 (1201)
+++..+.++.+.+-..||||||...||||
T Consensus 1137 vrat~a~~sdn~t~~rk~ep~k~~~~~kt 1165 (1165)
T KOG1948|consen 1137 VRATFAPTSDNHTRKRKREPRKAVARKKT 1165 (1165)
T ss_pred HHhhccccCCCCChhhhcchhhhhhhccC
Confidence 99999999999988889999999999986
No 2
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-52 Score=485.73 Aligned_cols=933 Identities=19% Similarity=0.243 Sum_probs=605.1
Q ss_pred cccccceeEEEEEecccccccccccCCCceEEEEeeecceEEEEEcCCCCCCcCCCceeEEEcCCCCCCCcceeEEEeee
Q 000982 47 ARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGF 126 (1201)
Q Consensus 47 ~~i~lsgv~V~L~~~~G~~~~~t~t~~nG~y~i~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~~~g~ 126 (1201)
+....+||.|+|...++. +.+|.|+++|.|.|....||+|.+++++|. |.+.....++.+-... +...+-+|.+.||
T Consensus 129 aggGpagV~velrs~e~~-iast~T~~~Gky~f~~iiPG~Yev~ashp~-w~~~~ag~tvvev~~a-~~~va~~f~VsGy 205 (1165)
T KOG1948|consen 129 AGGGPAGVLVELRSQEDP-IASTKTEDGGKYEFRNIIPGKYEVSASHPA-WECISAGKTVVEVKNA-PVVVAPNFKVSGY 205 (1165)
T ss_pred cCCCcccceeecccccCc-ceeeEecCCCeEEEEecCCCceEEeccCcc-eeEeecCcEEEEeCCC-ccccCCceEEEee
Confidence 345678999999987665 588899999999977669999999999999 9988665544333321 3445668999999
Q ss_pred EEeeeEeeeecCccccccCCCCcceeEEEeccC----------C------------CeeeeeeecCccceeeeeecCcce
Q 000982 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS----------G------------DLISSVITSSEGSYLFKNIIPGKY 184 (1201)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~----------g------------~~i~sttTd~~G~f~F~~l~PG~Y 184 (1201)
.+.|+|+.. +.|+.|+.+.|+..+ | ...+-+.+|++|+|+|.+||.|+|
T Consensus 206 dl~gsv~s~---------s~P~~gv~~~l~s~~v~~~dvpkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGkY 276 (1165)
T KOG1948|consen 206 DLEGSVRSE---------SMPFVGVVMTLYSTSVIDLDVPKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGKY 276 (1165)
T ss_pred eeEEEEecc---------CCcccceEEEEEEcccccccCCccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCCE
Confidence 999999985 479999999998543 1 124678999999999999999999
Q ss_pred eeeccCCCcE--EEEeee-eEEEeeccCceeeeeEeecCcccceEEEe--ecCceEEEEEEEEeCCcceeecCCCCCCCc
Q 000982 185 KLRASHPNLS--VEVRGS-TEVELGFENGEVDDIFFAPGYEIRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNAL 259 (1201)
Q Consensus 185 ~l~~~~~g~~--~~~~~~-~~V~v~~~~~~v~~~l~i~G~~vsG~V~~--~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~ 259 (1201)
.|.+.+-|.. +++.|. .+|+|..+..++.+.+.+.|++++|||+. .|.|++||.|.+.++
T Consensus 277 ~l~a~y~ge~~~fdvSP~~l~v~Vehd~lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvngk--------------- 341 (1165)
T KOG1948|consen 277 YLAASYVGEPKSFDVSPNPLKVVVEHDHLQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNGK--------------- 341 (1165)
T ss_pred EEEEEecCCceEEEeCCCceeEEEeccceeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcCc---------------
Confidence 9999886654 344444 88999999999999999999999999995 489999999988664
Q ss_pred cccccceeeeecCCcceeece-ecccceeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEEeeeeeeeEEeeCCCc
Q 000982 260 GERKALCHAVSDADGKFMFKS-VPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDM 338 (1201)
Q Consensus 260 ~~g~~~~~~~TD~~G~f~f~~-LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sv~G~V~d~~G~ 338 (1201)
....||++|.|++++ +..|+|+|.+ .+++++|+ ++.+.+..+...+++ +.+.+|.|+|+|.-..
T Consensus 342 ------~~~kTdaqGyykLen~~t~gtytI~a--~kehlqFs----tv~~kv~pntasLpd-I~a~~fdiCGqV~~~~-- 406 (1165)
T KOG1948|consen 342 ------SGGKTDAQGYYKLENLKTDGTYTITA--KKEHLQFS----TVHAKVKPNTASLPD-ITAQKFDICGQVEKSE-- 406 (1165)
T ss_pred ------ccceEcccceEEeeeeeccCcEEEEE--eccceeee----eEEEEecCCcccccc-ccccceeeeeEEEEcc--
Confidence 468999999999999 8899999999 67787776 344666666677775 7788999999996542
Q ss_pred ceeeEEEEE-----cCccc-ccccCC-ceeeeeeeecceeEEeeeeee------eeeccceeeEeecCCccccccceeee
Q 000982 339 GVEGVKILV-----DGHER-SITDRD-GYYKLDQVTSNRYTIEAVKVH------YKFNKLKEYMVLPNMASIADIKAISY 405 (1201)
Q Consensus 339 pl~Ga~V~l-----~G~~~-~~TDad-G~y~~~~L~pG~Y~I~~~~~~------y~~~~~~~v~v~p~~~~i~dI~~~~~ 405 (1201)
.++.+.+ +-+.. ..|++. |.|+| .++||.|+|++.... ..|.+. .+.+.-....+.+|.|.++
T Consensus 407 --k~~nv~lt~~~s~~k~s~~~t~etdGsfCf-~vppG~ytievl~~ta~~aagl~l~P~-~~~veV~~~pv~ni~Fsqf 482 (1165)
T KOG1948|consen 407 --KGVNVKLTFTRSDDKRSLEITPETDGSFCF-PVPPGLYTIEVLDKTASGAAGLLLTPR-LLEVEVLKNPVTNIRFSQF 482 (1165)
T ss_pred --ccceeEEEEccCccccccccccccCCceeE-EcCCccEEEEEeccCcccccccEeeee-eeeEEeecCcccceehhhh
Confidence 2333433 33333 244443 99999 999999999986543 334433 1223222334678999887
Q ss_pred --eeeeeEEEecCCceeEEEecc-CCCCCC-cccccccCCCCeEEE-eCCCceeeeeeecCCCCCcceeecCccceEEe-
Q 000982 406 --DICGVVRTVGSGNKVKVALTH-GPDKVK-PQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVV- 479 (1201)
Q Consensus 406 --~v~G~V~~~~~~~~a~VtL~~-~~~~~~-~~~t~Td~~G~f~f~-L~PG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V- 479 (1201)
+++|.|.|.+.|+.+.|+|.. ..+... ....-||+.+.|.|+ +.||.|+++... ...|||...+++++|
T Consensus 483 ranv~g~lsCl~tCg~a~vtlq~la~Gq~~~~~vk~td~~~~ftF~nilPGkY~~~i~d-----~~~wCwe~ss~~lnV~ 557 (1165)
T KOG1948|consen 483 RANVNGHLSCLGTCGTATVTLQLLAAGQTLVRSVKGTDESSVFTFENILPGKYSARIDD-----NGRWCWEKSSMTLNVE 557 (1165)
T ss_pred hhccceEEEeccCCCceeEEEEecccCCcceeeEEEEeeccEEEeeccCCcceEEEecc-----CCCceeecceEEEEee
Confidence 899999999999999999953 223222 345678999999999 999999999984 267999999999999
Q ss_pred eCccccchhhhheeeeccceeeccccCCcEEEEEEeecccCCCCceeeEEEeecCCcceeecccCCcceEEEEeecCCcc
Q 000982 480 KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREA 559 (1201)
Q Consensus 480 ~~p~~~I~f~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~ 559 (1201)
.+....|.|.|.+..++ |..+|.++++....++ ....+++.++..+-.+||++. ||.|-+...+|
T Consensus 558 ~~d~~aieFvqkGy~~~--------iisSH~a~~e~~h~dg-~~en~~~lki~kgvn~iCv~k--pGs~~~~~~sc---- 622 (1165)
T KOG1948|consen 558 QSDTQAIEFVQKGYAAQ--------IISSHPAEIEWSHADG-KQENGKTLKIGKGVNSICVPK--PGSYDVSLGSC---- 622 (1165)
T ss_pred cccccccceeeccEEEE--------EEecCceeeEEecCCC-CCCCcceEEecCcceEEEccC--Cccceeeccce----
Confidence 57788999999999887 5457788887655432 023455677778889999998 99999888655
Q ss_pred ccCCCceeeeeeeeeeeeccCcc---ceeEEEEeeeEEE-Eeeeccccc------eeecCCCCeee-----eeeecCcee
Q 000982 560 SSMEDNWCWEQSFIGVDVGTNDV---KGVEFVQKGYWLN-VISTHDVDA------YMTQQDGSHVP-----LKVKKGSQH 624 (1201)
Q Consensus 560 ~~~~~~~cw~~~~~~v~V~~~~~---~~~~F~q~Gy~~~-i~~sh~v~~------~~~~~~~~~~~-----~~l~kG~~~ 624 (1201)
|.|+.+++.+.|..+.. .++--.-+|-... ..++.+... ++.+-.++.++ ..+-.|...
T Consensus 623 ------~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~~s~~~k~v~e~~~~k~evit~~a~~~avD~G~f~ 696 (1165)
T KOG1948|consen 623 ------YTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAAVSIREKFVVEIQDIKSEVITREAQVPAVDNGRFT 696 (1165)
T ss_pred ------eecccCCceeecCCCcchHhHhhhhhhccceeeeecccccccchhhhhhhhhhhcccccCcccccccccCCcce
Confidence 67888899888875431 1111222232221 122222211 11111111111 222223333
Q ss_pred EEE---eCCce-eeeEeecceeeecCCeeeeeCCCCce---eeeecceee-eeeeeEEeecCCCccccCCccEEEEEEcC
Q 000982 625 ICV---ESPGV-HNLHFVNPCVFFGSPVLKMDTSNPSP---IYLKGEKYQ-LRGHINVQSRSPIGVHELPENIIVDILNG 696 (1201)
Q Consensus 625 ~c~---~~~G~-y~~~~~~sc~~f~~~~~~~~t~~~~~---i~l~~~~~~-~~G~i~~~~~~~~~~~~~~~~~~v~~~~~ 696 (1201)
+-- .++|. -.|+++.--..|.+.+.....+..|+ +.+++.+++ +.|+|. |. .+++.+++..+
T Consensus 697 yey~twas~gekl~ivPssk~lLFyP~s~eavvS~dC~~~a~~f~g~rGLfL~Gsi~------Pa----lega~Ikis~k 766 (1165)
T KOG1948|consen 697 YEYPTWASSGEKLVIVPSSKLLLFYPTSKEAVVSGDCIENAVKFNGFRGLFLDGSIK------PA----LEGAVIKISLK 766 (1165)
T ss_pred EechhhcCCCceEEEeeccceeeecCCceEEEEecccchhheeecceeeEEEcceec------cC----CCCcEEEEEec
Confidence 322 36664 67776444556888888888887775 667778777 677773 31 23444444333
Q ss_pred CC--CccccccceecCCCCCCcceeEEEEEEeeccCCceeEeecCCCCCcceeEEeeeeceeEEEecCCceeeeccccce
Q 000982 697 DG--SISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGR 774 (1201)
Q Consensus 697 ~g--~~i~~~~~~~~~~~~~~~~~~~y~~~~~a~~g~~~~v~P~s~~~~~~~~llf~P~~~~vtv~~~~c~~~~~~f~~~ 774 (1201)
+. .+|. ..+ +..|.|.+=.. .....+.++..- .-+.|.|.+... .+||..-. +.
T Consensus 767 kds~~~Ie-----v~T-----~~~Gafk~GPl-~~dl~yd~tA~k------egyvft~~~~t~----~sfqa~kl---~~ 822 (1165)
T KOG1948|consen 767 KDSDVVIE-----VIT-----NKDGAFKIGPL-KRDLDYDITATK------EGYVFTPTSPTP----GSFQAVKL---SQ 822 (1165)
T ss_pred CCCceeEE-----EEE-----cCCCcEEeccc-ccccccceeecc------CceEEecCCCCc----cceeeeee---eE
Confidence 32 2221 111 12233333110 111223333322 234444432111 12333110 00
Q ss_pred eeeEEecccCCCCCccEEEEEEecCccccccccceEEEEeeeCCCcceeccccccCccceeeecCCccceeeecC-----
Q 000982 775 LGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGP----- 849 (1201)
Q Consensus 775 ~G~~i~G~v~p~l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L~~~~~y~i~a~k~gy~~~~~~~----- 849 (1201)
.-..+......||+||...++... +.+-+.+|+++|.+.|..|.|+ +|.+++....|.|+|...
T Consensus 823 vsv~vkdea~q~LpgvLLSLsGg~----------~yRsNlvtgdng~~nf~sLsPg-qyylRpmlKEykFePst~mIevk 891 (1165)
T KOG1948|consen 823 VSVKVKDEATQPLPGVLLSLSGGK----------DYRSNLVTGDNGHKNFVSLSPG-QYYLRPMLKEYKFEPSTSMIEVK 891 (1165)
T ss_pred EEEEEeccCCCcCCcEEEEEecCc----------chhhccccCCCceeEEeecCcc-hhhhhhHHHhcCcCCCceeEEec
Confidence 112344445688999988875321 5678999999999999999996 999999999999998631
Q ss_pred ------Ccccccccc-cEEEEEEecCCCCCCCceeEEEeecC--CCcccCccccCCceeeeccccCccccchhhhhh---
Q 000982 850 ------NSFSCQKLS-QISVRIYSKDDAGEPIPSVLLSLSGD--DGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE--- 917 (1201)
Q Consensus 850 ------~~f~~~~l~-~i~v~v~~~~~~~~pL~~vl~slsg~--~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~ke--- 917 (1201)
..|...+.+ ++-.+|.. -+|+|..||-+.-.+. +.|-.-.+||+||++++.+|-||+-|..-+.++
T Consensus 892 eGq~~~vvl~gkRvAySayGtvss--LsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~~n 969 (1165)
T KOG1948|consen 892 EGQHENVVLKGKRVAYSAYGTVSS--LSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYADN 969 (1165)
T ss_pred cCceEEEEEEEEEEEEEeeeehhh--ccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeeccCC
Confidence 123222211 11234443 4499999999985544 357777899999999999999998774433222
Q ss_pred ---cccCCCceeEecCCCcceeEEEEEEEEEE--eeeeeEEeecCCCCCceeEEEeecccceeeeeeecCCCceEeeccc
Q 000982 918 ---YAFSPPAQAIELGSGESREVIFQATRVAY--SATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLH 992 (1201)
Q Consensus 918 ---y~~~p~~~~i~v~~G~~~~v~~~~~r~~~--s~~G~V~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~ 992 (1201)
-+--|.+.+++|...+-..+.|.+.+-+- .+.+.|. +|.|=. |+
T Consensus 970 ~~iers~P~s~tv~vgneDv~glnf~af~q~kttdit~~V~--------------------------~~~ne~-----l~ 1018 (1165)
T KOG1948|consen 970 SPIERSFPRSFTVSVGNEDVKGLNFMAFIQAKTTDITVEVG--------------------------MDTNEE-----LQ 1018 (1165)
T ss_pred CcccccCCceEEEEecccccCCceEEEEeccceEEEEEEEc--------------------------cccccc-----cc
Confidence 12336677777776666677776666542 2222222 111111 10
Q ss_pred CCceEEEEEEEecCCCcccccccCCceEEEEeccCccccceEEEeeccceeEEEEEeeccchhccccceEEEEeccCCcc
Q 000982 993 PDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTS 1072 (1201)
Q Consensus 993 pg~~y~v~~~~~~~~~~~~~~~~~P~~~~v~~~~~d~~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~ 1072 (1201)
....|..|... ....|+ +|.++. -+.-|..+. .-.-...|+|.|.
T Consensus 1019 --sl~vv~yKs~n--ddspv~-------sv~~gq------l~~ffp~l~--------------~dg~~yvV~l~St---- 1063 (1165)
T KOG1948|consen 1019 --SLRVVIYKSNN--DDSPVA-------SVVAGQ------LLHFFPNLP--------------RDGVEYVVRLEST---- 1063 (1165)
T ss_pred --ceEEEEEecCC--CCCcce-------EEeccc------eeeeccccC--------------CCCceEEEEEecc----
Confidence 00112222110 011111 111111 011111111 0011223444332
Q ss_pred ceeEEEeeccccceeecCCCCcceeeEeccCCCCcccccccceEEEeccccceeEEeeeeeeeecccccccCCCCcccce
Q 000982 1073 KVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPL 1152 (1201)
Q Consensus 1073 ~~~~~~~~~~~~~f~~~~l~~~~y~v~~~s~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1152 (1201)
||+-.|...+- + .+++.+.++.+.|++|+++.+|.++++++..+.++++|
T Consensus 1064 ------------------lp~~~y~yklp--------~----fva~~~~k~a~l~f~p~rra~eaDi~q~s~~al~l~~l 1113 (1165)
T KOG1948|consen 1064 ------------------LPPQAYAYKLP--------R----FVADQAMKVARLPFTPSRRANEADISQGSFLALPLFVL 1113 (1165)
T ss_pred ------------------CCchheeeecc--------E----EEeecceEEEEEEeCccccccccccccCcEehhHHHHH
Confidence 56667776663 2 47888999999999999999999999999999999988
Q ss_pred ehh--------hhheeeeecccchh-HHHHhhcCCCCCCchhhhccccccc
Q 000982 1153 IVG--------VSVIGLFISMPRLK-DLYQAAMGIPTPGFIATAKKEARKP 1194 (1201)
Q Consensus 1153 ~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1194 (1201)
+++ +.++.+-..+...+ .+.+++.+....+.....|+-.||.
T Consensus 1114 valaffnqd~~~~lLsi~s~ld~vrat~a~~sdn~t~~rk~ep~k~~~~~k 1164 (1165)
T KOG1948|consen 1114 VALAFFNQDRVLELLSIPSFLDWVRATFAPTSDNHTRKRKREPRKAVARKK 1164 (1165)
T ss_pred HHHHHhchhhhhhhhcchhHHHHHHhhccccCCCCChhhhcchhhhhhhcc
Confidence 876 12223333333333 3445556666666666666655553
No 3
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.5e-28 Score=297.00 Aligned_cols=409 Identities=16% Similarity=0.255 Sum_probs=299.6
Q ss_pred hhccccccCcccccceeEEEEEeccccccccc-ccCCCceEEEEeeecceEEE-EEcCCCCCCcC-CCceeEEEcCCCCC
Q 000982 38 LIKSRKATDARLDYSHVTVELRTLDGLVKEST-QCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWN-PDKVAVTVDDTGCN 114 (1201)
Q Consensus 38 ~~~~~k~sd~~i~lsgv~V~L~~~~G~~~~~t-~t~~nG~y~i~~l~~G~Y~l-~~~~P~G~~~~-p~~~~v~Vd~~~~s 114 (1201)
++|..| .+..--++|+.++||+.+|....+. +|+.+|.+.+..|.-|+|.| +.++|.||... -...+++|+..
T Consensus 973 iTKvDk-a~~~k~LeGA~F~Lyd~~Ge~~~reitT~~dGkl~~~nL~~~dY~LiETkAPtGY~l~~~dgkeiTI~~s--- 1048 (1531)
T COG4932 973 ITKVDK-ADTGKKLEGAKFQLYDSEGEKLGREITTDEDGKLTFDNLQYGDYKLIETKAPTGYTLDYKDGKEITISAS--- 1048 (1531)
T ss_pred EeccCc-ccccccccccEEEEEecCCceeeeeeeecccceeeecccccceeEEEEccCCcceeeccCcccEEEEecC---
Confidence 444444 4445569999999999998775554 77889999999999999999 89999999988 55666777652
Q ss_pred CCcceeEEEeeeEEeeeEe-eeecCccccccCCCCcceeEEEeccCCCeeee-eeecCccceeeeeecCcceeeeccC--
Q 000982 115 GNEDINFRFTGFTLLGRVV-GAIGGESCLDKGGGPSNVNVELLSHSGDLISS-VITSSEGSYLFKNIIPGKYKLRASH-- 190 (1201)
Q Consensus 115 ~~~dinf~~~g~~IsG~V~-~~~g~~s~~~~g~plaGv~V~L~~~~g~~i~s-ttTd~~G~f~F~~l~PG~Y~l~~~~-- 190 (1201)
+..+-.....-...|.|. .+. |+++++-|+||.++|.+.+|..+++ .+||++|.....+|.||+|++.+.+
T Consensus 1049 -g~Ei~vtkeN~~~~g~V~L~K~----D~at~~~LaGA~FeLQdk~G~~l~enL~TD~~G~v~itdLaPGDYqfVEtkAP 1123 (1531)
T COG4932 1049 -GKEIFVTKENEAKKGSVQLTKK----DSATGATLAGAEFELQDKDGNTLQENLTTDEDGKVEITDLAPGDYQFVETKAP 1123 (1531)
T ss_pred -CceeEEeecccccccceeEEEe----cccccccccCceEEEeeccCcchhhhccccccCcEEeccccCCceeeEEecCC
Confidence 222323333434455552 221 2347899999999999999977776 8999999999999999999998754
Q ss_pred CCcEEEEeeeeEEEeeccCceeeeeEeecCcccceEEE-----e-ecCceEEEEEEEEeCCcceeecCCCCCCCcccccc
Q 000982 191 PNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVV-----A-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKA 264 (1201)
Q Consensus 191 ~g~~~~~~~~~~V~v~~~~~~v~~~l~i~G~~vsG~V~-----~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~ 264 (1201)
.||.++.. .+.|++...+..+ ..+........|.|. + .+.+|+||+|.|.+.+++.+
T Consensus 1124 tGY~Ldat-PV~FtI~eeq~e~-~~vtKeN~~~~GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~V--------------- 1186 (1531)
T COG4932 1124 TGYILDAT-PVNFTISEEQDEA-AKVTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTLV--------------- 1186 (1531)
T ss_pred ceeEecCc-cceeEeeccCCce-eEEeecccccccceEEEEecccccccccCcEEEEEcCCCcEe---------------
Confidence 58988733 3677777444332 122223344455544 3 48999999999999876532
Q ss_pred ceeeeecCCcceeeceecccceeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEEeeeeeeeEEeeC-----CCcc
Q 000982 265 LCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDE-----NDMG 339 (1201)
Q Consensus 265 ~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sv~G~V~d~-----~G~p 339 (1201)
....+||++|+....+|.||+|++.+..++.++.++..|. .|++..++... .........+.|.|+.. .+..
T Consensus 1187 qegLtTD~nG~i~VtdL~PGdYqFVETkAP~GY~LdatP~--~FtI~~~q~ev-~~V~~en~~~pgsv~L~k~d~~~~~~ 1263 (1531)
T COG4932 1187 QEGLTTDENGKINVTDLAPGDYQFVETKAPTGYILDATPT--PFTIEFNQEEV-VKVVKENTAIPGSVVLTKKDSDTGAA 1263 (1531)
T ss_pred eccceecCCCcEEecccCCcceeeeeecCCcceeeccccc--eeEEeccccce-eEEeeccccCCCCceeeccCCCcccc
Confidence 3468999999999999999999999976666666666665 46665554322 12223334467777542 5888
Q ss_pred eeeEEEEE---cCccc---ccccCCceeeeeeeecceeEE-eeee-eeeeeccce-eeEeecCCccccccceeeeeeeee
Q 000982 340 VEGVKILV---DGHER---SITDRDGYYKLDQVTSNRYTI-EAVK-VHYKFNKLK-EYMVLPNMASIADIKAISYDICGV 410 (1201)
Q Consensus 340 l~Ga~V~l---~G~~~---~~TDadG~y~~~~L~pG~Y~I-~~~~-~~y~~~~~~-~v~v~p~~~~i~dI~~~~~~v~G~ 410 (1201)
++||.+.+ +|..+ .+||+.|...+.+|+||+|+. +..+ .||..+..+ .+.+.-++....-+...+..+.|.
T Consensus 1264 l~~a~fkl~~~eg~~vqe~L~td~~Gei~v~dlkpGdyqfVETkAp~Gy~L~a~pv~ftI~~~q~e~~kV~~~n~~~~gs 1343 (1531)
T COG4932 1264 LSGAEFKLLDAEGTTVQEGLTTDETGEIVVADLKPGDYQFVETKAPEGYILDATPVNFTIEFNQEEAVKVTKENDAKTGS 1343 (1531)
T ss_pred cCCCceeeecCCCcEeccCceecCCCcEEecccCCCcccceEccCCcceEEeecceeEEEEecccccEEEEEeecccccc
Confidence 99999999 45544 499999999999999999995 4444 468777653 334444555555666677788888
Q ss_pred EEEec-------CCceeEEEeccCCCCCCcccccccCCCCeEEE-eCCCceeeeeeecCCCCCcceeecCccceEEe
Q 000982 411 VRTVG-------SGNKVKVALTHGPDKVKPQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVV 479 (1201)
Q Consensus 411 V~~~~-------~~~~a~VtL~~~~~~~~~~~t~Td~~G~f~f~-L~PG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V 479 (1201)
|.... ...+|.+.|.+..+++......||++|+..+. |+||.|++.+++ ++.||.+....++++|
T Consensus 1344 v~l~k~d~~~~~~LegA~F~l~de~g~ilke~l~t~~nG~l~v~dLaPGdYqfvETk----APtgY~Ld~tpv~FTI 1416 (1531)
T COG4932 1344 VVLTKLDSSSGVTLEGAEFELLDEEGNILKEGLVTDENGQLLVDDLAPGDYQFVETK----APTGYELDATPVDFTI 1416 (1531)
T ss_pred EEEEEeecccCccccCcEEEEEcccCceehhcceeCCCCcEEEeecCCCceeeEEcc----CCcceeccCCceEEEE
Confidence 87543 13578888887777665677899999999999 999999999998 4789999888788777
No 4
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.4e-26 Score=281.90 Aligned_cols=411 Identities=17% Similarity=0.268 Sum_probs=288.6
Q ss_pred cCCCCcceeEEEeccCCCe-eeeeeecCccceeeeeecCcceeeeccC--CCcEEEEeeeeEEEeeccCceeeeeEeecC
Q 000982 144 KGGGPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFENGEVDDIFFAPG 220 (1201)
Q Consensus 144 ~g~plaGv~V~L~~~~g~~-i~sttTd~~G~f~F~~l~PG~Y~l~~~~--~g~~~~~~~~~~V~v~~~~~~v~~~l~i~G 220 (1201)
.+..++|+.+.|++..|+. .+..+||++|.+.|.+|.-|+|.+.+++ .||........++++......+ .+....
T Consensus 981 ~~k~LeGA~F~Lyd~~Ge~~~reitT~~dGkl~~~nL~~~dY~LiETkAPtGY~l~~~dgkeiTI~~sg~Ei--~vtkeN 1058 (1531)
T COG4932 981 TGKKLEGAKFQLYDSEGEKLGREITTDEDGKLTFDNLQYGDYKLIETKAPTGYTLDYKDGKEITISASGKEI--FVTKEN 1058 (1531)
T ss_pred ccccccccEEEEEecCCceeeeeeeecccceeeecccccceeEEEEccCCcceeeccCcccEEEEecCCcee--EEeecc
Confidence 4689999999999998854 6789999999999999999999999865 4887652223566666543321 111222
Q ss_pred cccceEEE-----e-ecCceEEEEEEEEeCCcceeecCCCCCCCccccccceeeeecCCcceeeceecccceeeeeeccc
Q 000982 221 YEIRGLVV-----A-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKG 294 (1201)
Q Consensus 221 ~~vsG~V~-----~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~ 294 (1201)
-...|.|. + .|+-|+||.|.|.+.++.. .....+||++|...+.+|.||+|++++..++
T Consensus 1059 ~~~~g~V~L~K~D~at~~~LaGA~FeLQdk~G~~---------------l~enL~TD~~G~v~itdLaPGDYqfVEtkAP 1123 (1531)
T COG4932 1059 EAKKGSVQLTKKDSATGATLAGAEFELQDKDGNT---------------LQENLTTDEDGKVEITDLAPGDYQFVETKAP 1123 (1531)
T ss_pred cccccceeEEEecccccccccCceEEEeeccCcc---------------hhhhccccccCcEEeccccCCceeeEEecCC
Confidence 22233333 2 4899999999999886421 1235899999999999999999999996555
Q ss_pred cceEEeeCCCceeeEEeeeeeeccceeEEeeeeeeeEEe----eC-CCcceeeEEEEE---cCccc---ccccCCceeee
Q 000982 295 ENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVV----DE-NDMGVEGVKILV---DGHER---SITDRDGYYKL 363 (1201)
Q Consensus 295 ~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sv~G~V~----d~-~G~pl~Ga~V~l---~G~~~---~~TDadG~y~~ 363 (1201)
.++.++..| +.|++...+- ....+........|.|. |+ .+.+|+||.|.| +|+.+ .+||++|...+
T Consensus 1124 tGY~LdatP--V~FtI~eeq~-e~~~vtKeN~~~~GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~V 1200 (1531)
T COG4932 1124 TGYILDATP--VNFTISEEQD-EAAKVTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTLVQEGLTTDENGKINV 1200 (1531)
T ss_pred ceeEecCcc--ceeEeeccCC-ceeEEeecccccccceEEEEecccccccccCcEEEEEcCCCcEeeccceecCCCcEEe
Confidence 555555555 5566653211 11112222233455553 55 789999999999 67666 49999999999
Q ss_pred eeeecceeEE-eeeee-eeeeccce-eeEeecCCccccccceeeeeeeeeEEEecC-------CceeEEEeccCCCCCCc
Q 000982 364 DQVTSNRYTI-EAVKV-HYKFNKLK-EYMVLPNMASIADIKAISYDICGVVRTVGS-------GNKVKVALTHGPDKVKP 433 (1201)
Q Consensus 364 ~~L~pG~Y~I-~~~~~-~y~~~~~~-~v~v~p~~~~i~dI~~~~~~v~G~V~~~~~-------~~~a~VtL~~~~~~~~~ 433 (1201)
.+|.||+|++ +..+| +|..+..+ .+.+.-++.++.-+..++..+.|+|..... .+.+...|.++.+....
T Consensus 1201 tdL~PGdYqFVETkAP~GY~LdatP~~FtI~~~q~ev~~V~~en~~~pgsv~L~k~d~~~~~~l~~a~fkl~~~eg~~vq 1280 (1531)
T COG4932 1201 TDLAPGDYQFVETKAPTGYILDATPTPFTIEFNQEEVVKVVKENTAIPGSVVLTKKDSDTGAALSGAEFKLLDAEGTTVQ 1280 (1531)
T ss_pred cccCCcceeeeeecCCcceeeccccceeEEeccccceeEEeeccccCCCCceeeccCCCcccccCCCceeeecCCCcEec
Confidence 9999999995 55554 68877643 456666666666666777788999886542 24667777666655445
Q ss_pred ccccccCCCCeEEE-eCCCceeeeeeecCCCCCcceeecCccceEEee-Cccccchhhhheeeeccceeecc--c----c
Q 000982 434 QVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVK-SPLLNIEFSQALVNVLGNVACKE--R----C 505 (1201)
Q Consensus 434 ~~t~Td~~G~f~f~-L~PG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V~-~p~~~I~f~q~~a~V~G~V~~~~--~----~ 505 (1201)
...+||++|..... |.||+|++.+++ ++.||.+...++.++|. +....+...-..-.+.|.|.+.. . .
T Consensus 1281 e~L~td~~Gei~v~dlkpGdyqfVETk----Ap~Gy~L~a~pv~ftI~~~q~e~~kV~~~n~~~~gsv~l~k~d~~~~~~ 1356 (1531)
T COG4932 1281 EGLTTDETGEIVVADLKPGDYQFVETK----APEGYILDATPVNFTIEFNQEEAVKVTKENDAKTGSVVLTKLDSSSGVT 1356 (1531)
T ss_pred cCceecCCCcEEecccCCCcccceEcc----CCcceEEeecceeEEEEecccccEEEEEeeccccccEEEEEeecccCcc
Confidence 67889999999999 999999999998 46899998777777762 22222222212223445555432 1 1
Q ss_pred CCcEEEEEEeecccCCCCceeeEEEeecCCcceeecccCCcceEEEEeecCCccccCCCceeeeeeeeeeeec--cCccc
Q 000982 506 GPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVG--TNDVK 583 (1201)
Q Consensus 506 ~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~~~v~V~--~~~~~ 583 (1201)
..|+.+.|+...|. ..+.-.+|+++|+..+.||+||.|++.+.++ |.+|..+.+++.+++. ++++.
T Consensus 1357 LegA~F~l~de~g~-----ilke~l~t~~nG~l~v~dLaPGdYqfvETkA-------PtgY~Ld~tpv~FTIe~~q~e~~ 1424 (1531)
T COG4932 1357 LEGAEFELLDEEGN-----ILKEGLVTDENGQLLVDDLAPGDYQFVETKA-------PTGYELDATPVDFTIEFNQEEAL 1424 (1531)
T ss_pred ccCcEEEEEcccCc-----eehhcceeCCCCcEEEeecCCCceeeEEccC-------CcceeccCCceEEEEEcCcccce
Confidence 23788888876654 2233346899999999999999999999998 8888899999988876 34444
Q ss_pred eeEEEEe
Q 000982 584 GVEFVQK 590 (1201)
Q Consensus 584 ~~~F~q~ 590 (1201)
-+.+.++
T Consensus 1425 ~vt~~nk 1431 (1531)
T COG4932 1425 KVTKTNK 1431 (1531)
T ss_pred EEEeecc
Confidence 4444443
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.80 E-value=9.7e-09 Score=94.28 Aligned_cols=69 Identities=20% Similarity=0.384 Sum_probs=52.0
Q ss_pred eeeeEEeeCCCcceeeEEEEEc---Cccc--ccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecCCc
Q 000982 327 SVGGRVVDENDMGVEGVKILVD---GHER--SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMA 395 (1201)
Q Consensus 327 sv~G~V~d~~G~pl~Ga~V~l~---G~~~--~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~ 395 (1201)
+|+|+|+|++|+||+||.|.+. +... +.||++|+|.|.+|+||+|+|++.+++|.......+.+.++..
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~ 74 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQT 74 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSE
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCE
Confidence 5899999999999999999992 2222 5899999999999999999999999998766543466766543
No 6
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.73 E-value=2.1e-08 Score=92.05 Aligned_cols=74 Identities=27% Similarity=0.471 Sum_probs=55.4
Q ss_pred EEeeeEeeeecCccccccCCCCcceeEEEeccCCCeeeeeeecCccceeeeeecCcceeeeccCCCcEEEEeeeeEEEee
Q 000982 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (1201)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~~~~~~~~~~V~v~ 206 (1201)
+|+|+|.+. ++.|++||.|.|.+.++.....+.||++|+|.|.+|+||+|.|.++++||..... ..+.+.
T Consensus 1 tI~G~V~d~--------~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~--~~v~v~ 70 (82)
T PF13620_consen 1 TISGTVTDA--------TGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQ--ENVTVT 70 (82)
T ss_dssp -EEEEEEET--------TSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEE--EEEEES
T ss_pred CEEEEEEcC--------CCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEE--EEEEEe
Confidence 489999985 3799999999999877777889999999999999999999999999999986521 246666
Q ss_pred ccCc
Q 000982 207 FENG 210 (1201)
Q Consensus 207 ~~~~ 210 (1201)
.+..
T Consensus 71 ~~~~ 74 (82)
T PF13620_consen 71 AGQT 74 (82)
T ss_dssp SSSE
T ss_pred CCCE
Confidence 5443
No 7
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=98.27 E-value=1.3e-06 Score=77.91 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=53.0
Q ss_pred cceeEEEEEecccccccc--cccCCCceEEEEeeecceEEE-EEcCCCCCCcCCCceeEEEcCC
Q 000982 51 YSHVTVELRTLDGLVKES--TQCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWNPDKVAVTVDDT 111 (1201)
Q Consensus 51 lsgv~V~L~~~~G~~~~~--t~t~~nG~y~i~~l~~G~Y~l-~~~~P~G~~~~p~~~~v~Vd~~ 111 (1201)
|+||+|+|++.++..... ..|+.+|.|.|..|++|.|+| +..+|+||.+.+....+.+..+
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~ 64 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITED 64 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTT
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecC
Confidence 579999999999877775 788999999999999999999 6778999999988888877664
No 8
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.03 E-value=1.3e-05 Score=74.71 Aligned_cols=57 Identities=19% Similarity=0.513 Sum_probs=49.7
Q ss_pred eeeeEEeeCC-CcceeeEEEEEc-CcccccccCCceeeeeeeecceeEEeeeeeeeeecc
Q 000982 327 SVGGRVVDEN-DMGVEGVKILVD-GHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNK 384 (1201)
Q Consensus 327 sv~G~V~d~~-G~pl~Ga~V~l~-G~~~~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~ 384 (1201)
.|+|+|.|.. ++||++|.|.+. ....+.||++|+|.|. +++|+|+|.+++.+|....
T Consensus 1 ti~G~V~d~~t~~pl~~a~V~~~~~~~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~~ 59 (88)
T PF13715_consen 1 TISGKVVDSDTGEPLPGATVYLKNTKKGTVTDENGRFSIK-LPEGDYTLKISYIGYETKT 59 (88)
T ss_pred CEEEEEEECCCCCCccCeEEEEeCCcceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEEE
Confidence 3789999995 999999999994 4455799999999997 9999999999999986544
No 9
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=98.00 E-value=1.5e-05 Score=70.93 Aligned_cols=61 Identities=25% Similarity=0.480 Sum_probs=48.2
Q ss_pred CcceeEEEeccCCCeeee--eeecCccceeeeeecCcceeeeccC--CCcEEEEeeeeEEEeeccC
Q 000982 148 PSNVNVELLSHSGDLISS--VITSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFEN 209 (1201)
Q Consensus 148 laGv~V~L~~~~g~~i~s--ttTd~~G~f~F~~l~PG~Y~l~~~~--~g~~~~~~~~~~V~v~~~~ 209 (1201)
|+||+|+|++.++..... .+||++|.|.|.+|+||+|+|.+.. +||... .....+.+..++
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~-~~~~~~~i~~~~ 65 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLD-DTPYEFTITEDG 65 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEE-ECEEEEEECTTS
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEEC-CCceEEEEecCC
Confidence 689999999988866654 8999999999999999999999854 688876 333566665443
No 10
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=97.89 E-value=5.9e-05 Score=70.27 Aligned_cols=58 Identities=24% Similarity=0.372 Sum_probs=50.4
Q ss_pred EEeeeEeeeecCccccccCCCCcceeEEEeccCCCeeeeeeecCccceeeeeecCcceeeeccCCCcEEE
Q 000982 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (1201)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~~~~ 196 (1201)
+|+|+|.+.. ++.|++||+|.+.+.+ ..+.||++|+|.|. +++|+|.|.+++.||...
T Consensus 1 ti~G~V~d~~-------t~~pl~~a~V~~~~~~----~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~ 58 (88)
T PF13715_consen 1 TISGKVVDSD-------TGEPLPGATVYLKNTK----KGTVTDENGRFSIK-LPEGDYTLKISYIGYETK 58 (88)
T ss_pred CEEEEEEECC-------CCCCccCeEEEEeCCc----ceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEE
Confidence 3789999852 4799999999998643 56889999999999 999999999999999865
No 11
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.76 E-value=3.8e-05 Score=90.42 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=59.0
Q ss_pred eeeeeEEeeC-CCcceeeEEEEEcCccc-ccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecCCcccccc
Q 000982 326 FSVGGRVVDE-NDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADI 400 (1201)
Q Consensus 326 ~sv~G~V~d~-~G~pl~Ga~V~l~G~~~-~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI 400 (1201)
..|.|+|+|. +|+||+||+|.|.|... ++||.+|.|.+ .|+||+|+|++++.+|..... .+.+.++.....+|
T Consensus 297 ~gI~G~V~D~~~g~pl~~AtV~V~g~~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~~~~~-~v~V~~~~~~~~~~ 371 (375)
T cd03863 297 RGVRGFVLDATDGRGILNATISVADINHPVTTYKDGDYWR-LLVPGTYKVTASARGYDPVTK-TVEVDSKGAVQVNF 371 (375)
T ss_pred CeEEEEEEeCCCCCCCCCeEEEEecCcCceEECCCccEEE-ccCCeeEEEEEEEcCcccEEE-EEEEcCCCcEEEEE
Confidence 3689999997 79999999999977554 68999999998 799999999999999876655 46666654433343
No 12
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.62 E-value=0.00013 Score=65.55 Aligned_cols=57 Identities=32% Similarity=0.513 Sum_probs=51.1
Q ss_pred EEeeeEeeeecCccccccCCCCcceeEEEeccCCCeeeeeeecCccceeeeeecCcceeeeccCCCc
Q 000982 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNL 193 (1201)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~ 193 (1201)
-|+|+|... +.|++|+-|+|++.+|+...+..|+++|.|+|- ..||+++|++.+++-
T Consensus 9 VItG~V~~~---------G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFf-aapG~WtvRal~~~g 65 (85)
T PF07210_consen 9 VITGRVTRD---------GEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFF-AAPGSWTVRALSRGG 65 (85)
T ss_pred EEEEEEecC---------CcCCCCeEEEEEcCCCCeEEEEEecCCccEEEE-eCCCceEEEEEccCC
Confidence 478999842 699999999999999999999999999999999 899999999977643
No 13
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.59 E-value=0.00011 Score=86.39 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=55.9
Q ss_pred eeeeeEEeeCCCcceeeEEEEEcCcccccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecCC
Q 000982 326 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 394 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l~G~~~~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~ 394 (1201)
..|+|+|+|.+|+||+||.|.+.|....+||.+|.|.+. |+||+|+|++++.+|..... .+.+..+.
T Consensus 287 ~gI~G~V~d~~g~pi~~A~V~v~g~~~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~~~~~-~V~v~~~~ 353 (363)
T cd06245 287 KGVHGVVTDKAGKPISGATIVLNGGHRVYTKEGGYFHVL-LAPGQHNINVIAEGYQQEHL-PVVVSHDE 353 (363)
T ss_pred cEEEEEEEcCCCCCccceEEEEeCCCceEeCCCcEEEEe-cCCceEEEEEEEeCceeEEE-EEEEcCCC
Confidence 468999999999999999999966555689999999995 99999999999999876544 35555543
No 14
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.58 E-value=9.4e-05 Score=87.36 Aligned_cols=67 Identities=24% Similarity=0.248 Sum_probs=56.1
Q ss_pred eeeeEEeeCCCcceeeEEEEEcCccc-ccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecCCc
Q 000982 327 SVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMA 395 (1201)
Q Consensus 327 sv~G~V~d~~G~pl~Ga~V~l~G~~~-~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~ 395 (1201)
.|.|+|.|..|.||+||+|.|.|... .+||.+|.|.+ .|+||+|+|++++.+|.... ..+.+..+..
T Consensus 327 gI~G~V~D~~g~pI~~AtV~V~g~~~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~~~~-~~V~V~~~~~ 394 (402)
T cd03865 327 GVKGFVKDLQGNPIANATISVEGIDHDITSAKDGDYWR-LLAPGNYKLTASAPGYLAVV-KKVAVPYSPA 394 (402)
T ss_pred ceEEEEECCCCCcCCCeEEEEEcCccccEECCCeeEEE-CCCCEEEEEEEEecCcccEE-EEEEEcCCCc
Confidence 48999999999999999999976544 58999999998 99999999999999986654 3566665543
No 15
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.56 E-value=0.00011 Score=87.03 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=56.4
Q ss_pred eeeeeEEeeCCCcceeeEEEEEcCccc-ccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecCC
Q 000982 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 394 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l~G~~~-~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~ 394 (1201)
..|.|+|.|.+|.||+||.|.|.|... .+||.+|.| +..|+||+|+|++++.+|..... .+.+..+.
T Consensus 316 ~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~t~-~v~V~~~~ 383 (392)
T cd03864 316 QGIKGMVTDENNNGIANAVISVSGISHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPSTV-TVTVGPAE 383 (392)
T ss_pred CeEEEEEECCCCCccCCeEEEEECCccceEECCCCcE-EecCCCeeEEEEEEEcCceeEEE-EEEEcCCC
Confidence 368999999999999999999977654 689999999 98999999999999999876554 35555543
No 16
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.41 E-value=0.00025 Score=83.53 Aligned_cols=86 Identities=19% Similarity=0.326 Sum_probs=73.8
Q ss_pred cccccccccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCceeEecC
Q 000982 851 SFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELG 930 (1201)
Q Consensus 851 ~f~~~~l~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~ 930 (1201)
.|-.+...+|..+|.|+ .+|+||++|.++|.|.+ ...+||.+|.|.+ .|+||+|.|+...-+|+ +..+.|+|.
T Consensus 290 ~~~~~~~~gI~G~V~D~-~~g~pl~~AtV~V~g~~---~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~--~~~~~v~V~ 362 (375)
T cd03863 290 QFMKQVHRGVRGFVLDA-TDGRGILNATISVADIN---HPVTTYKDGDYWR-LLVPGTYKVTASARGYD--PVTKTVEVD 362 (375)
T ss_pred HHHHHhcCeEEEEEEeC-CCCCCCCCeEEEEecCc---CceEECCCccEEE-ccCCeeEEEEEEEcCcc--cEEEEEEEc
Confidence 44456668899999997 45999999999999863 5678999999998 69999999999998998 667789999
Q ss_pred CCcceeEEEEEEE
Q 000982 931 SGESREVIFQATR 943 (1201)
Q Consensus 931 ~G~~~~v~~~~~r 943 (1201)
+|+++.+.|...|
T Consensus 363 ~~~~~~~~~~L~~ 375 (375)
T cd03863 363 SKGAVQVNFTLSR 375 (375)
T ss_pred CCCcEEEEEEecC
Confidence 9999999998765
No 17
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.36 E-value=0.00022 Score=84.50 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=55.0
Q ss_pred eeeeeEEeeCCCcceeeEEEEEcCcc-cccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecCC
Q 000982 326 FSVGGRVVDENDMGVEGVKILVDGHE-RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 394 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l~G~~-~~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~ 394 (1201)
..|.|+|.|.+|+|++||.|.|.+.. .++||++|.|.. +|+||+|+|++++.+|.......+.+..+.
T Consensus 296 ~~i~G~V~d~~g~pv~~A~V~v~~~~~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~g~ 364 (372)
T cd03868 296 IGVKGFVRDASGNPIEDATIMVAGIDHNVTTAKFGDYWR-LLLPGTYTITAVAPGYEPSTVTDVVVKEGE 364 (372)
T ss_pred CceEEEEEcCCCCcCCCcEEEEEecccceEeCCCceEEe-cCCCEEEEEEEEecCCCceEEeeEEEcCCC
Confidence 46899999999999999999995543 369999999985 899999999999999765554334455543
No 18
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.26 E-value=0.00062 Score=61.34 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=48.2
Q ss_pred ccceEEEeecCceEEEEEEEEeCCcceeecCCCCCCCccccccceeeeecCCcceeeceecccceeeeeeccc
Q 000982 222 EIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKG 294 (1201)
Q Consensus 222 ~vsG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~ 294 (1201)
.|+|+|+.+|+|++||.|+|.+.. |+......|.++|.|+|- -.||+++|++..++
T Consensus 9 VItG~V~~~G~Pv~gAyVRLLD~s----------------gEFtaEvvts~~G~FRFf-aapG~WtvRal~~~ 64 (85)
T PF07210_consen 9 VITGRVTRDGEPVGGAYVRLLDSS----------------GEFTAEVVTSATGDFRFF-AAPGSWTVRALSRG 64 (85)
T ss_pred EEEEEEecCCcCCCCeEEEEEcCC----------------CCeEEEEEecCCccEEEE-eCCCceEEEEEccC
Confidence 478999988999999999999874 345688999999999996 78999999996544
No 19
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.20 E-value=0.00088 Score=66.74 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=51.8
Q ss_pred eeeeeEEeeCCCcceeeEEEEE----cCccc-------ccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecC
Q 000982 326 FSVGGRVVDENDMGVEGVKILV----DGHER-------SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPN 393 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l----~G~~~-------~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~ 393 (1201)
..|+|...|+.|+|++|+.|.| +-..+ ..||++|+|.| ++.||.|.|.+..+++.+.-.-.+.+.+.
T Consensus 3 V~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~-~~epG~Y~V~l~~~g~~~~~vG~I~V~~d 80 (134)
T PF08400_consen 3 VKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSF-DVEPGVYRVTLKVEGRPPVYVGDITVYED 80 (134)
T ss_pred EEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEE-EecCCeEEEEEEECCCCceeEEEEEEecC
Confidence 4689999999999999999999 22222 37999999999 99999999999888754333323445443
No 20
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=97.14 E-value=0.0007 Score=80.07 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=52.3
Q ss_pred eeeeeEEeeCCCcceeeEEEEEcCcc---cccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEee
Q 000982 326 FSVGGRVVDENDMGVEGVKILVDGHE---RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVL 391 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l~G~~---~~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~ 391 (1201)
..|.|+|+|.+|+||+||.|.|.|.. ..+||++|.|.+ .|+||+|+|++++++|..... .+.+.
T Consensus 295 ~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~~~T~~~G~y~~-~l~pG~Y~v~vsa~Gy~~~~~-~v~v~ 361 (376)
T cd03866 295 LGVKGQVFDSNGNPIPNAIVEVKGRKHICPYRTNVNGEYFL-LLLPGKYMINVTAPGFKTVIT-NVIIP 361 (376)
T ss_pred CceEEEEECCCCCccCCeEEEEEcCCceeEEEECCCceEEE-ecCCeeEEEEEEeCCcceEEE-EEEeC
Confidence 36899999999999999999996654 248999999976 699999999999999855433 34444
No 21
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.10 E-value=0.00071 Score=80.36 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=51.2
Q ss_pred eeeeeEEeeCCCcceeeEEEEEcCccc-ccccCCceeeeeeeecceeEEeeeeeeeeeccc
Q 000982 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 385 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l~G~~~-~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~ 385 (1201)
.+|+|+|.|.+|+|+++|+|.+.|... +.||.+|.|.+ .|++|+|+|+++..+|.....
T Consensus 298 ~~i~G~V~d~~g~pl~~A~V~i~~~~~~~~Td~~G~f~~-~l~~G~y~l~vs~~Gy~~~~~ 357 (374)
T cd03858 298 RGIKGFVRDANGNPIANATISVEGINHDVTTAEDGDYWR-LLLPGTYNVTASAPGYEPQTK 357 (374)
T ss_pred CceEEEEECCCCCccCCeEEEEecceeeeEECCCceEEE-ecCCEeEEEEEEEcCcceEEE
Confidence 379999999999999999999976654 68999999998 589999999999999755443
No 22
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=97.09 E-value=0.00065 Score=68.63 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=50.9
Q ss_pred EEeeeEeeeecCccccccCCCCcceeEEEeccCC---CeeeeeeecCccceee---e-eecCcceeeeccCCCcEE
Q 000982 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF---K-NIIPGKYKLRASHPNLSV 195 (1201)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g---~~i~sttTd~~G~f~F---~-~l~PG~Y~l~~~~~g~~~ 195 (1201)
.|++.|++.. +|.|++||.|+|...++ +.+.+++||+||++.+ . .+.||.|+|++...+|.-
T Consensus 28 ~Is~HVLDt~-------~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf~ 96 (137)
T PRK15036 28 ILSVHILNQQ-------TGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFK 96 (137)
T ss_pred CeEEEEEeCC-------CCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhhh
Confidence 4899998852 58999999999986543 4578999999999986 2 388999999998888753
No 23
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.06 E-value=0.00091 Score=79.73 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=54.0
Q ss_pred eeeeeEEeeCCCcceeeEEEEEcCccc-ccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeec
Q 000982 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l~G~~~-~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p 392 (1201)
..|.|+|.|.+|+||+||.|.+.|... ++||.+|.|. ..|+||+|+|++++.+|..... .+.+..
T Consensus 318 ~~i~G~V~D~~g~pi~~A~V~v~g~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~~~~~-~v~v~~ 383 (395)
T cd03867 318 RGIKGFVKDKDGNPIKGARISVRGIRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYTKVMK-RVTLPA 383 (395)
T ss_pred ceeEEEEEcCCCCccCCeEEEEeccccceEECCCceEE-EecCCCcEEEEEEecCeeeEEE-EEEeCC
Confidence 368999999999999999999977655 6899999997 5899999999999999865443 355543
No 24
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.03 E-value=0.0017 Score=64.77 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=50.2
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccCC------CeeeeeeecCccceeeeeecCcceeeeccCCCcEEE
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG------DLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g------~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~~~~ 196 (1201)
..|+|...+ | .|.|++|++++|..... ....+..|+++|.|+|+ +.||.|.|.....||...
T Consensus 3 V~ISGvL~d--g------~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~~~ 70 (134)
T PF08400_consen 3 VKISGVLKD--G------AGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRPPV 70 (134)
T ss_pred EEEEEEEeC--C------CCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCCce
Confidence 357887766 3 57999999999985443 23567889999999999 999999999988888654
No 25
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=96.87 E-value=0.0014 Score=77.77 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=69.5
Q ss_pred cccccccccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCceeEecC
Q 000982 851 SFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELG 930 (1201)
Q Consensus 851 ~f~~~~l~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~ 930 (1201)
.|-.+...+|..+|.|.+ |+||++|.+.|.|.+ ...+||.+|.| +..|.||+|.|+....+|. +..+.|+|.
T Consensus 309 ~~~~~~~~gI~G~V~D~~--g~pi~~A~V~v~g~~---~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~--~~t~~v~V~ 380 (392)
T cd03864 309 SYIEQVHQGIKGMVTDEN--NNGIANAVISVSGIS---HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ--PSTVTVTVG 380 (392)
T ss_pred HHHHHhcCeEEEEEECCC--CCccCCeEEEEECCc---cceEECCCCcE-EecCCCeeEEEEEEEcCce--eEEEEEEEc
Confidence 343455568889999874 899999999998863 46789999999 9999999999999998998 667778999
Q ss_pred CCcceeEEEEE
Q 000982 931 SGESREVIFQA 941 (1201)
Q Consensus 931 ~G~~~~v~~~~ 941 (1201)
+++++++.|+.
T Consensus 381 ~~~~~~~df~L 391 (392)
T cd03864 381 PAEATLVNFQL 391 (392)
T ss_pred CCCcEEEeeEe
Confidence 99988887764
No 26
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=96.78 E-value=0.0021 Score=76.15 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=68.9
Q ss_pred ccccccccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCceeEecCC
Q 000982 852 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 931 (1201)
Q Consensus 852 f~~~~l~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~ 931 (1201)
|-++..-+|..+|.|+. |+|+++|.++|.|.+ .+.+|+.+|.|.+ .|.||+|.|+....+|+ +..+.|+|.+
T Consensus 320 ~~~q~~~gI~G~V~D~~--g~pI~~AtV~V~g~~---~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~--~~~~~V~V~~ 391 (402)
T cd03865 320 YIEQVHRGVKGFVKDLQ--GNPIANATISVEGID---HDITSAKDGDYWR-LLAPGNYKLTASAPGYL--AVVKKVAVPY 391 (402)
T ss_pred HHHHhccceEEEEECCC--CCcCCCeEEEEEcCc---cccEECCCeeEEE-CCCCEEEEEEEEecCcc--cEEEEEEEcC
Confidence 43444445888999864 899999999999863 4678999999998 99999999999999998 4568899999
Q ss_pred CcceeEEEEE
Q 000982 932 GESREVIFQA 941 (1201)
Q Consensus 932 G~~~~v~~~~ 941 (1201)
++++.+.|+.
T Consensus 392 ~~~~~vdf~L 401 (402)
T cd03865 392 SPAVRVDFEL 401 (402)
T ss_pred CCcEEEeEEe
Confidence 9999988875
No 27
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=96.75 E-value=0.0024 Score=75.25 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=68.3
Q ss_pred ccccccccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCceeEecCC
Q 000982 852 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 931 (1201)
Q Consensus 852 f~~~~l~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~ 931 (1201)
|-.+..-+|..+|.|.. |+||++|.+.|.|.. ..+||.+|.|.+. |+||+|.|+....+|. +..+.|.|.+
T Consensus 281 ~~~~~~~gI~G~V~d~~--g~pi~~A~V~v~g~~----~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~--~~~~~V~v~~ 351 (363)
T cd06245 281 MIVEAHKGVHGVVTDKA--GKPISGATIVLNGGH----RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ--QEHLPVVVSH 351 (363)
T ss_pred HHHHcCcEEEEEEEcCC--CCCccceEEEEeCCC----ceEeCCCcEEEEe-cCCceEEEEEEEeCce--eEEEEEEEcC
Confidence 43445577888999873 899999999999852 6789999999997 9999999999999998 5677889999
Q ss_pred CcceeEEEEE
Q 000982 932 GESREVIFQA 941 (1201)
Q Consensus 932 G~~~~v~~~~ 941 (1201)
++++.+.|+.
T Consensus 352 ~~~~~~~f~L 361 (363)
T cd06245 352 DEASSVKIVL 361 (363)
T ss_pred CCeEEEEEEe
Confidence 9988888765
No 28
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=96.57 E-value=0.0021 Score=64.95 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=45.5
Q ss_pred eeeeEEeeC-CCcceeeEEEEE---cCc-----ccccccCCceeee---e-eeecceeEEeeeeeeee
Q 000982 327 SVGGRVVDE-NDMGVEGVKILV---DGH-----ERSITDRDGYYKL---D-QVTSNRYTIEAVKVHYK 381 (1201)
Q Consensus 327 sv~G~V~d~-~G~pl~Ga~V~l---~G~-----~~~~TDadG~y~~---~-~L~pG~Y~I~~~~~~y~ 381 (1201)
.|++.|+|. .|+|++|+.|.| ++. ..+.||+||++.+ . .+.+|.|+|.+...+|-
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf 95 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYF 95 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhh
Confidence 589999998 899999999999 222 1258999999986 2 38899999999988873
No 29
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.56 E-value=0.0043 Score=73.50 Aligned_cols=68 Identities=25% Similarity=0.468 Sum_probs=53.0
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccCCCeeeeeeecCccceeeeeecCcceeeeccCCCcEEEEeeeeEEEe
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~~~~~~~~~~V~v 205 (1201)
..|.|+|.+. ++.|++||+|++...+ ....++||.+|.|.+. |+||+|.|.++++||... ..++.+
T Consensus 295 ~gI~G~V~D~--------~g~pi~~A~V~v~g~~--~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~~~---~~~v~v 360 (376)
T cd03866 295 LGVKGQVFDS--------NGNPIPNAIVEVKGRK--HICPYRTNVNGEYFLL-LLPGKYMINVTAPGFKTV---ITNVII 360 (376)
T ss_pred CceEEEEECC--------CCCccCCeEEEEEcCC--ceeEEEECCCceEEEe-cCCeeEEEEEEeCCcceE---EEEEEe
Confidence 3589999874 3689999999997432 1246789999999775 999999999999999754 245655
Q ss_pred ec
Q 000982 206 GF 207 (1201)
Q Consensus 206 ~~ 207 (1201)
..
T Consensus 361 ~~ 362 (376)
T cd03866 361 PY 362 (376)
T ss_pred CC
Confidence 54
No 30
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=96.45 E-value=0.0045 Score=72.90 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=57.3
Q ss_pred eeeeEEeeCCCcceeeEEEEEcCcc-cccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecCCccccccce
Q 000982 327 SVGGRVVDENDMGVEGVKILVDGHE-RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKA 402 (1201)
Q Consensus 327 sv~G~V~d~~G~pl~Ga~V~l~G~~-~~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~~ 402 (1201)
-|.|.|+|.+|+||++|+|.|+|-. ..+|..+|-|-- -|.||.|.|+|.+++|...+. .+.|.+..+...|+.+
T Consensus 379 GIkG~V~D~~G~~I~NA~IsV~ginHdv~T~~~GDYWR-LL~PG~y~vta~A~Gy~~~tk-~v~V~~~~a~~~df~L 453 (500)
T KOG2649|consen 379 GIKGLVFDDTGNPIANATISVDGINHDVTTAKEGDYWR-LLPPGKYIITASAEGYDPVTK-TVTVPPDRAARVNFTL 453 (500)
T ss_pred ccceeEEcCCCCccCceEEEEecCcCceeecCCCceEE-eeCCcceEEEEecCCCcceee-EEEeCCCCccceeEEE
Confidence 3799999999999999999997655 468888886643 599999999999999877665 5677663333334444
No 31
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=96.27 E-value=6.2 Score=51.24 Aligned_cols=196 Identities=14% Similarity=0.169 Sum_probs=89.9
Q ss_pred eeeeecCCcceeeceec--ccceeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEEeeeeeeeEEeeCCCcceeeE
Q 000982 266 CHAVSDADGKFMFKSVP--CGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGV 343 (1201)
Q Consensus 266 ~~~~TD~~G~f~f~~Lp--pG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sv~G~V~d~~G~pl~Ga 343 (1201)
..-..+.||.+.+.-+| ||.|++.+.+.+.+. .-+|-...++=..+.... ..++. ++.-..++-+..++...
T Consensus 622 i~c~dn~Dgt~~vsy~P~vpG~y~i~V~~~~k~v--pgSPF~~~Vt~~~s~r~s--~~~Vg--s~~ev~in~~~~~~s~l 695 (1113)
T KOG0518|consen 622 IRCYDNKDGTCSVSYTPTVPGVYKIEVKFGDKHV--PGSPFVALVTGDESIRTS--HLSVG--SIHEVTINITEADLSVL 695 (1113)
T ss_pred eeEEeCCCCcEEeccCCCCCceEEEEEEECCeeC--CCCCceEEEecccccccc--cceec--ceeeEEeeccccCCcee
Confidence 44566889999999998 799999996533221 123333322200000000 00000 00000111112233333
Q ss_pred EEEE---cCccc---ccccCCceeeeeee--ecceeEEeeeeeeeeeccceeeEeecCCccccccceeeeeeeeeEEEec
Q 000982 344 KILV---DGHER---SITDRDGYYKLDQV--TSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVG 415 (1201)
Q Consensus 344 ~V~l---~G~~~---~~TDadG~y~~~~L--~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~~~~~~v~G~V~~~~ 415 (1201)
++.+ .|... ..-=.+|.|.+.-+ .+|.+.|.++.++...... .+.+.-... ++.+...++.|+.....
T Consensus 696 taeI~~PsGn~~~c~~r~l~~g~~~itF~P~e~GeH~I~Vk~~G~hVpgs-Pf~i~V~~~---e~dAsk~~v~g~g~~~G 771 (1113)
T KOG0518|consen 696 TAEIVDPSGNPEPCLVRRLPNGHDGITFTPREVGEHKINVKVAGKHVPGS-PFSIKVSES---EIDASKVRVSGQGLKEG 771 (1113)
T ss_pred EEEEECCCCCccceeeEecCCCceeEEECCCcCcceEEEEEEcceECCCC-CeEEEeccc---cccceeEEEeccccccc
Confidence 3333 22222 12224454444434 3577777777766333222 122222222 22444455666544221
Q ss_pred ---------------CCceeEEEeccCCCCCCcccccccCCCCeEEE---eCCCceeeeeeecCCCCCcceeecCccceE
Q 000982 416 ---------------SGNKVKVALTHGPDKVKPQVKQTDNNGNFCFE---VPPGEYRLSAMAATPESSSGILFLPPYADV 477 (1201)
Q Consensus 416 ---------------~~~~a~VtL~~~~~~~~~~~t~Td~~G~f~f~---L~PG~Y~v~~~~~~~~~~~G~~~~p~~~~V 477 (1201)
+-++..|.++ ++.++. ....-.+||.+... =.||.|.|.+.-.+ ....+..+.|
T Consensus 772 ~t~ep~~fivDtr~agyGgLsi~~~-Gpskvd-~~~~d~~dGt~kV~ytPtepG~Y~I~i~Fad------~~I~gSPftV 843 (1113)
T KOG0518|consen 772 HTFEPAEFIVDTRKAGYGGLSISVQ-GPSKVD-LNVEDREDGTCKVSYTPTEPGTYIINIKFAD------EHIKGSPFTV 843 (1113)
T ss_pred ccccchheEeccccCCCCceEEEEe-CCcccc-cceeecCCCeEEEEEeCCCCceEEEEEEEcC------ccCCCCceEE
Confidence 1123344443 333332 23344578887775 77899999987633 2234444555
Q ss_pred Ee
Q 000982 478 VV 479 (1201)
Q Consensus 478 ~V 479 (1201)
.+
T Consensus 844 kv 845 (1113)
T KOG0518|consen 844 KV 845 (1113)
T ss_pred Ee
Confidence 55
No 32
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=96.24 E-value=0.0064 Score=72.12 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=51.2
Q ss_pred eeeeEEeeCCCcceeeEEEEEcCccc-ccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeec
Q 000982 327 SVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (1201)
Q Consensus 327 sv~G~V~d~~G~pl~Ga~V~l~G~~~-~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p 392 (1201)
-|.|.|+|.+|.||++|+|.|.|... .+|.++|.|- .-|.||+|+|++.+++|..... .+.+..
T Consensus 330 GikG~V~d~~g~~i~~a~i~v~g~~~~v~t~~~Gdyw-Rll~pG~y~v~~~a~gy~~~~~-~~~v~~ 394 (405)
T cd03869 330 GIKGVVRDKTGKGIPNAIISVEGINHDIRTASDGDYW-RLLNPGEYRVTAHAEGYTSSTK-NCEVGY 394 (405)
T ss_pred CceEEEECCCCCcCCCcEEEEecCccceeeCCCCceE-EecCCceEEEEEEecCCCcccE-EEEEcC
Confidence 48999999999999999999977544 4788889754 2599999999999999865554 344443
No 33
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=96.22 E-value=0.011 Score=70.17 Aligned_cols=58 Identities=28% Similarity=0.436 Sum_probs=48.7
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccCCCeeeeeeecCccceeeeeecCcceeeeccCCCcEEE
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~~~~ 196 (1201)
.+|+|+|.+. ++.|++||+|.+. |. ...++||.+|.|.+. |+||+|+|.++..||...
T Consensus 298 ~~i~G~V~d~--------~g~pl~~A~V~i~---~~-~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~~~ 355 (374)
T cd03858 298 RGIKGFVRDA--------NGNPIANATISVE---GI-NHDVTTAEDGDYWRL-LLPGTYNVTASAPGYEPQ 355 (374)
T ss_pred CceEEEEECC--------CCCccCCeEEEEe---cc-eeeeEECCCceEEEe-cCCEeEEEEEEEcCcceE
Confidence 3789999875 3689999999994 22 356889999999987 899999999999999754
No 34
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.11 E-value=0.013 Score=55.63 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=29.6
Q ss_pred eeeeeEEeeCCC---cce-eeEEEEEc-------Cccc---ccccCCceeeeeeeecceeEEeeeeee
Q 000982 326 FSVGGRVVDEND---MGV-EGVKILVD-------GHER---SITDRDGYYKLDQVTSNRYTIEAVKVH 379 (1201)
Q Consensus 326 ~sv~G~V~d~~G---~pl-~Ga~V~l~-------G~~~---~~TDadG~y~~~~L~pG~Y~I~~~~~~ 379 (1201)
.+|+|+|...+| .+. ..+.|-+. ++.- +.||++|+|+|++++||+|++.+=+++
T Consensus 3 G~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g 70 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADG 70 (95)
T ss_dssp BEEEEEEE---SS--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE--
T ss_pred CEEEEEEEEccCcccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEec
Confidence 478999987666 334 34555553 2211 689999999999999999999987744
No 35
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=96.07 E-value=2.3 Score=54.87 Aligned_cols=185 Identities=17% Similarity=0.210 Sum_probs=90.9
Q ss_pred eeeecCccceeeeee--cCcceeeeccCCCcEEEEeee-eEEEeeccCceeeeeEeecCcccceEEEeecCceEEEEEEE
Q 000982 165 SVITSSEGSYLFKNI--IPGKYKLRASHPNLSVEVRGS-TEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYL 241 (1201)
Q Consensus 165 sttTd~~G~f~F~~l--~PG~Y~l~~~~~g~~~~~~~~-~~V~v~~~~~~v~~~l~i~G~~vsG~V~~~g~Pl~Ga~V~L 241 (1201)
.-.-+.||.+...-+ .||.|.+.+...+-... ++ -...|..+.......+.+... ..-.+.-...++..-++.+
T Consensus 623 ~c~dn~Dgt~~vsy~P~vpG~y~i~V~~~~k~vp--gSPF~~~Vt~~~s~r~s~~~Vgs~-~ev~in~~~~~~s~ltaeI 699 (1113)
T KOG0518|consen 623 RCYDNKDGTCSVSYTPTVPGVYKIEVKFGDKHVP--GSPFVALVTGDESIRTSHLSVGSI-HEVTINITEADLSVLTAEI 699 (1113)
T ss_pred eEEeCCCCcEEeccCCCCCceEEEEEEECCeeCC--CCCceEEEecccccccccceecce-eeEEeeccccCCceeEEEE
Confidence 445678999888766 46999998876554432 11 111222100000000111000 0000001234555555555
Q ss_pred EeCCcceeecCCCCCCCccccccceeeeecCCcceeeceec--ccceeeeeeccccceEEeeCCCceeeEEeeeeeeccc
Q 000982 242 YSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVP--CGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPE 319 (1201)
Q Consensus 242 ~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp--pG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~ 319 (1201)
.+..+. ..-|.+.--.+|+|.+.-+| +|.+.|...+.|.+ +.-+.+.+.|.+... +.
T Consensus 700 ~~PsGn---------------~~~c~~r~l~~g~~~itF~P~e~GeH~I~Vk~~G~h----VpgsPf~i~V~~~e~--dA 758 (1113)
T KOG0518|consen 700 VDPSGN---------------PEPCLVRRLPNGHDGITFTPREVGEHKINVKVAGKH----VPGSPFSIKVSESEI--DA 758 (1113)
T ss_pred ECCCCC---------------ccceeeEecCCCceeEEECCCcCcceEEEEEEcceE----CCCCCeEEEeccccc--cc
Confidence 554322 12356655566666555555 57777777554432 333334444443322 10
Q ss_pred eeEEeeeeeeeE-------------EeeCCCcceeeEEEEEcCccc----ccccCCceeeeeee--ecceeEEeeee
Q 000982 320 KFQVTGFSVGGR-------------VVDENDMGVEGVKILVDGHER----SITDRDGYYKLDQV--TSNRYTIEAVK 377 (1201)
Q Consensus 320 ~f~~~g~sv~G~-------------V~d~~G~pl~Ga~V~l~G~~~----~~TDadG~y~~~~L--~pG~Y~I~~~~ 377 (1201)
. -..+.|+ ++|+...+-.|..|.+.|... ..-.+||.+++.-- .||+|.|...-
T Consensus 759 -s---k~~v~g~g~~~G~t~ep~~fivDtr~agyGgLsi~~~Gpskvd~~~~d~~dGt~kV~ytPtepG~Y~I~i~F 831 (1113)
T KOG0518|consen 759 -S---KVRVSGQGLKEGHTFEPAEFIVDTRKAGYGGLSISVQGPSKVDLNVEDREDGTCKVSYTPTEPGTYIINIKF 831 (1113)
T ss_pred -e---eEEEecccccccccccchheEeccccCCCCceEEEEeCCcccccceeecCCCeEEEEEeCCCCceEEEEEEE
Confidence 0 1122222 334445556667777766543 24457898887655 47999988763
No 36
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=95.88 E-value=0.014 Score=59.90 Aligned_cols=53 Identities=32% Similarity=0.533 Sum_probs=43.6
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccCC----------------CeeeeeeecCccceeeeeecCcceee
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG----------------DLISSVITSSEGSYLFKNIIPGKYKL 186 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g----------------~~i~sttTd~~G~f~F~~l~PG~Y~l 186 (1201)
..|.|+|++. ++.|+++|.|+|+..+. ..-....||++|+|.|..+.||.|.+
T Consensus 12 l~l~G~V~D~--------~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 12 LTLTGTVLDG--------DGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred EEEEEEEECC--------CCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 4678999975 36899999999997653 11346889999999999999999995
No 37
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=95.88 E-value=0.011 Score=56.19 Aligned_cols=60 Identities=27% Similarity=0.367 Sum_probs=30.6
Q ss_pred EEeeeEeeeecCccccccCCCC--cceeEEEecc-----CCCeeeeeeecCccceeeeeecCcceeeeccCCC
Q 000982 127 TLLGRVVGAIGGESCLDKGGGP--SNVNVELLSH-----SGDLISSVITSSEGSYLFKNIIPGKYKLRASHPN 192 (1201)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~pl--aGv~V~L~~~-----~g~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g 192 (1201)
+|+|++...+| -..+. ..+.|-|... +-..-..+.||++|+|+|++|+||+|.|.+-.+|
T Consensus 4 ~VsG~l~l~dg------~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g 70 (95)
T PF14686_consen 4 SVSGRLTLSDG------VTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADG 70 (95)
T ss_dssp EEEEEEE---S------S--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE--
T ss_pred EEEEEEEEccC------cccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEec
Confidence 68888875422 01233 3455555422 1133457889999999999999999999987654
No 38
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=95.81 E-value=0.011 Score=57.71 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=46.5
Q ss_pred EeeeEeeeecCccccccCCCCcceeEEEeccCC---CeeeeeeecCcccee-----eeeecCcceeeeccCCCcE
Q 000982 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYL-----FKNIIPGKYKLRASHPNLS 194 (1201)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g---~~i~sttTd~~G~f~-----F~~l~PG~Y~l~~~~~g~~ 194 (1201)
|+=.|++.. .|.|.+|+.|+|...++ +.+.+..||+||++. -..++||.|+|++....|.
T Consensus 3 lstHVLDt~-------~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTT-------SGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCC-------CCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 444566542 58999999999987554 457889999999997 3567899999998776664
No 39
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=95.79 E-value=0.014 Score=69.40 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=66.4
Q ss_pred cccccccccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCcee-Eec
Q 000982 851 SFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQA-IEL 929 (1201)
Q Consensus 851 ~f~~~~l~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~-i~v 929 (1201)
.|-.+-.+.|..+|.|.. |+|+++|.+.|.+.+ ...+||++|.|. .+|+||.|.|+....+|+ +..+. +.|
T Consensus 289 ~~~~~~~~~i~G~V~d~~--g~pv~~A~V~v~~~~---~~~~td~~G~y~-~~l~~G~Y~l~vs~~Gf~--~~~~~~v~v 360 (372)
T cd03868 289 AYLEQVHIGVKGFVRDAS--GNPIEDATIMVAGID---HNVTTAKFGDYW-RLLLPGTYTITAVAPGYE--PSTVTDVVV 360 (372)
T ss_pred HHHHHhCCceEEEEEcCC--CCcCCCcEEEEEecc---cceEeCCCceEE-ecCCCEEEEEEEEecCCC--ceEEeeEEE
Confidence 344556688999999873 899999999999863 457899999998 489999999999988998 43443 568
Q ss_pred CCCcceeEEEE
Q 000982 930 GSGESREVIFQ 940 (1201)
Q Consensus 930 ~~G~~~~v~~~ 940 (1201)
..|++..+.|+
T Consensus 361 ~~g~~~~~~~~ 371 (372)
T cd03868 361 KEGEATSVNFT 371 (372)
T ss_pred cCCCeEEEeeE
Confidence 88999888765
No 40
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.78 E-value=0.01 Score=64.72 Aligned_cols=52 Identities=31% Similarity=0.502 Sum_probs=44.0
Q ss_pred eeeeeeEEeeCCCcceeeEEEEE-----cCcc------------------cccccCCceeeeeeeecceeEEeee
Q 000982 325 GFSVGGRVVDENDMGVEGVKILV-----DGHE------------------RSITDRDGYYKLDQVTSNRYTIEAV 376 (1201)
Q Consensus 325 g~sv~G~V~d~~G~pl~Ga~V~l-----~G~~------------------~~~TDadG~y~~~~L~pG~Y~I~~~ 376 (1201)
...|.|+|+|.+|+||++|.|.+ .|.. ...||++|.|.|.-+.||.|-....
T Consensus 72 ~i~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~ 146 (226)
T COG3485 72 RILLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNG 146 (226)
T ss_pred eEEEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCC
Confidence 46789999999999999999998 2321 1489999999999999999987755
No 41
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.71 E-value=19 Score=52.14 Aligned_cols=173 Identities=13% Similarity=0.180 Sum_probs=91.5
Q ss_pred CeEEE-eCCCceeeeeeecCCCCCcceeecCccceEEeeCccccchhhhh--eeee--ccceeeccccCCcEEEEEEeec
Q 000982 443 NFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQA--LVNV--LGNVACKERCGPLVTVTLMRLG 517 (1201)
Q Consensus 443 ~f~f~-L~PG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V~~p~~~I~f~q~--~a~V--~G~V~~~~~~~~~~~VtL~~~~ 517 (1201)
..+.. ..||.|+|+..+.. .+.+...+.+++|..++.++.+... .+.+ .+++.+.-..+.+++..+..-+
T Consensus 1831 ~v~~Tf~~aG~ytV~L~AsN-----~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1831 HACMTFPDAGTFAIRLNASN-----AVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred eeEEecCCCeEEEEEEEEEc-----ccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence 45566 89999999999863 3345555666777555555443211 1111 1111221112223333333322
Q ss_pred ccCCCCceeeEEEeecCCcceeecccCCcceEEEEeecCCccccCCCceeeeeeeeeeeeccCccceeEEEEe-------
Q 000982 518 QKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQK------- 590 (1201)
Q Consensus 518 ~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~~~v~V~~~~~~~~~F~q~------- 590 (1201)
+. .... +...+|+-.--.||+|.|.+... ...-|.+....|+|.+ .+.++.+...
T Consensus 1906 gs--------~~~~-t~~~t~~HsY~~~G~Y~VtV~A~--------N~Vs~~~a~~~V~Vle-~V~gL~I~~~c~~~~~~ 1967 (2740)
T TIGR00864 1906 AA--------PEVL-QPGPRFSHSFPRVDDHMVNLRAK--------NEVSCAQANLHIEVLE-AVRGLQIPDCCAAGIAT 1967 (2740)
T ss_pred CC--------ceee-cCCCeEEeecCCCCcEEEEEEEE--------eccceeeeeEEEEEEE-eccceEecCCcccceec
Confidence 21 1112 23446666666799999999864 2334466666666643 2344433321
Q ss_pred ----eeEEEEeeeccccceee-c-CCCCeeeeeeecC-ceeEEEeCCceeeeEee
Q 000982 591 ----GYWLNVISTHDVDAYMT-Q-QDGSHVPLKVKKG-SQHICVESPGVHNLHFV 638 (1201)
Q Consensus 591 ----Gy~~~i~~sh~v~~~~~-~-~~~~~~~~~l~kG-~~~~c~~~~G~y~~~~~ 638 (1201)
=|+.++...+++...|. . ....+-.+.+..| ...+..+.+|.|+|++.
T Consensus 1968 g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v~ 2022 (2740)
T TIGR00864 1968 GEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQLG 2022 (2740)
T ss_pred CceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEccCCCcEEEEEEE
Confidence 23556777888876663 1 1111112334444 35667789999999973
No 42
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=95.20 E-value=0.03 Score=59.72 Aligned_cols=49 Identities=33% Similarity=0.565 Sum_probs=36.0
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc----------------cccccCCceeeeeeeecceeEEe
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE----------------RSITDRDGYYKLDQVTSNRYTIE 374 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~----------------~~~TDadG~y~~~~L~pG~Y~I~ 374 (1201)
+.|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+-
T Consensus 30 l~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~ 99 (183)
T PF00775_consen 30 LVLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPIP 99 (183)
T ss_dssp EEEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEES
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCCC
Confidence 4688999999999999999998 2211 03899999999999999999874
No 43
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.09 E-value=0.023 Score=61.92 Aligned_cols=48 Identities=33% Similarity=0.629 Sum_probs=40.6
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc-------------------cccccCCceeeeeeeecceeEE
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~-------------------~~~TDadG~y~~~~L~pG~Y~I 373 (1201)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|.+
T Consensus 66 i~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 66 IIVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4689999999999999999998 2210 1389999999999999999977
No 44
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=94.95 E-value=0.037 Score=66.21 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=63.6
Q ss_pred ccccccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCceeEecCC--
Q 000982 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS-- 931 (1201)
Q Consensus 854 ~~~l~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~-- 931 (1201)
.+-.-+|..+|.|+. |+|+++|.+.|.|. ....+||++|.|. ..|.||+|.|....-+|+ +..+.|+|.+
T Consensus 314 ~~~~~~i~G~V~D~~--g~pi~~A~V~v~g~---~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~--~~~~~v~v~~~~ 385 (395)
T cd03867 314 EMVHRGIKGFVKDKD--GNPIKGARISVRGI---RHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT--KVMKRVTLPARM 385 (395)
T ss_pred HhccceeEEEEEcCC--CCccCCeEEEEecc---ccceEECCCceEE-EecCCCcEEEEEEecCee--eEEEEEEeCCcC
Confidence 334456888999874 89999999999986 2457899999997 689999999998888987 5567788855
Q ss_pred CcceeEEEE
Q 000982 932 GESREVIFQ 940 (1201)
Q Consensus 932 G~~~~v~~~ 940 (1201)
++...+.|+
T Consensus 386 ~~~~~~d~~ 394 (395)
T cd03867 386 KRAGRVDFV 394 (395)
T ss_pred CCceEeeeE
Confidence 677777765
No 45
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=94.88 E-value=0.046 Score=52.20 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=33.7
Q ss_pred cCCCCcceeEEEec-cCCCeeeeeeecCccceeeeee
Q 000982 144 KGGGPSNVNVELLS-HSGDLISSVITSSEGSYLFKNI 179 (1201)
Q Consensus 144 ~g~plaGv~V~L~~-~~g~~i~sttTd~~G~f~F~~l 179 (1201)
++.|++||+|+|++ .+|+++.+.+||++|..+|+..
T Consensus 24 tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~ 60 (97)
T PF11974_consen 24 TGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST 60 (97)
T ss_pred CCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC
Confidence 57999999999999 8899999999999999999966
No 46
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.72 E-value=0.034 Score=60.73 Aligned_cols=48 Identities=35% Similarity=0.630 Sum_probs=40.6
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc-------------------cccccCCceeeeeeeecceeEE
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~-------------------~~~TDadG~y~~~~L~pG~Y~I 373 (1201)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||-|.+
T Consensus 61 i~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 61 IIVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4689999999999999999998 2310 1379999999999999999977
No 47
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=94.65 E-value=0.033 Score=61.83 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=40.8
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc--------------cccccCCceeeeeeeecceeEE
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TDadG~y~~~~L~pG~Y~I 373 (1201)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|-|
T Consensus 99 l~v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 99 LLIRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 4689999999999999999999 3321 1389999999999999999976
No 48
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=94.57 E-value=0.035 Score=54.26 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=42.8
Q ss_pred eeeEEeeC-CCcceeeEEEEE---cCcc---c--ccccCCceee-----eeeeecceeEEeeeeeeee
Q 000982 328 VGGRVVDE-NDMGVEGVKILV---DGHE---R--SITDRDGYYK-----LDQVTSNRYTIEAVKVHYK 381 (1201)
Q Consensus 328 v~G~V~d~-~G~pl~Ga~V~l---~G~~---~--~~TDadG~y~-----~~~L~pG~Y~I~~~~~~y~ 381 (1201)
|+=.|+|. .|+|.+|+.|.| ++.. + +.||+||++. -+.+++|.|+|++....|.
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 44468886 899999999999 3432 2 5899999997 4567899999999887773
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.56 E-value=0.041 Score=57.23 Aligned_cols=48 Identities=27% Similarity=0.504 Sum_probs=40.6
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc-------------------cccccCCceeeeeeeecceeEE
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~-------------------~~~TDadG~y~~~~L~pG~Y~I 373 (1201)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+
T Consensus 16 l~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 16 IILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 4578999999999999999998 2210 1379999999999999999996
No 50
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=94.41 E-value=0.07 Score=54.89 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=43.3
Q ss_pred EeeeeeEEeecCCCCCceeEEEeeccc----------------ceeeeeeecCCCceEeecccCCceEEE
Q 000982 946 YSATGTITLLSGQPKDGVSVEARSESK----------------GYYEETVTDTSGSYRLRGLHPDTTYVI 999 (1201)
Q Consensus 946 ~s~~G~V~~~~g~p~~gv~v~~~~~~~----------------~~~~~~~Td~~G~~~i~gL~pg~~y~v 999 (1201)
-.+.|+|++.+|.|++++.|++--.+. ..++-..||++|.|+++.+.||. |.+
T Consensus 12 l~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~-Y~~ 80 (146)
T cd00421 12 LTLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGP-YPI 80 (146)
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCC-CCC
Confidence 346899999999999999999852221 34778899999999999999996 443
No 51
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=94.38 E-value=0.17 Score=48.28 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred EEEEEEEEEEeeeeeEEe-ecCCCCCceeEEEee-cccceeeeeeecCCCceEeecccCCceEEEEEEE
Q 000982 937 VIFQATRVAYSATGTITL-LSGQPKDGVSVEARS-ESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVK 1003 (1201)
Q Consensus 937 v~~~~~r~~~s~~G~V~~-~~g~p~~gv~v~~~~-~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~ 1003 (1201)
+-|.+++......=.|++ .+|+|++||.|++.+ .++....+.+||++|..++....+. +.|.++.
T Consensus 4 lGl~ak~~~~~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~--~~viA~~ 70 (97)
T PF11974_consen 4 LGLTAKQGPDGLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDSTKKP--FLVIARK 70 (97)
T ss_pred eEEEEEEcCCCEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCCCCC--EEEEEEE
Confidence 334455555555556666 469999999999998 7777999999999999999998433 4555543
No 52
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=94.37 E-value=0.053 Score=54.10 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=41.8
Q ss_pred eeeEEEEEcC-cc---cccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEee
Q 000982 340 VEGVKILVDG-HE---RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVL 391 (1201)
Q Consensus 340 l~Ga~V~l~G-~~---~~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~ 391 (1201)
.+..+|.|++ .. .+....||.|.|.+|++|+|.+++....|.|.+. .+.+.
T Consensus 7 ~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~~-RVdV~ 61 (123)
T PF09430_consen 7 PSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFPPY-RVDVS 61 (123)
T ss_pred CCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCccccCE-EEEEe
Confidence 4567777853 33 4789999999999999999999999999999986 46555
No 53
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=94.35 E-value=0.04 Score=62.15 Aligned_cols=49 Identities=27% Similarity=0.542 Sum_probs=41.4
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc--------------cccccCCceeeeeeeecceeEEe
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TDadG~y~~~~L~pG~Y~I~ 374 (1201)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|-
T Consensus 133 l~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~YpiP 200 (281)
T TIGR02438 133 LVFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQIP 200 (281)
T ss_pred EEEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCC
Confidence 4689999999999999999998 3432 13899999999999999999763
No 54
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=94.33 E-value=0.069 Score=56.95 Aligned_cols=68 Identities=22% Similarity=0.442 Sum_probs=40.5
Q ss_pred ccceEEEe-ecCceEEEEEEEEeCCcceeecCCCCC-CCccccccceeeeecCCcceeeceecccceeeee
Q 000982 222 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSG-NALGERKALCHAVSDADGKFMFKSVPCGQYELVP 290 (1201)
Q Consensus 222 ~vsG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~-~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~ 290 (1201)
.+.|+|.+ +|+||+||.|.++..+..-........ ..+ .........||++|+|.|.-+.||.|.+-.
T Consensus 31 ~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~-~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~~ 100 (183)
T PF00775_consen 31 VLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQP-DFNLRGRFRTDADGRYSFRTIKPGPYPIPD 100 (183)
T ss_dssp EEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSS-TTTTEEEEEECTTSEEEEEEE----EEEST
T ss_pred EEEEEEECCCCCCCCCcEEEEEecCCCCcccccccccccc-CCCcceEEecCCCCEEEEEeeCCCCCCCCC
Confidence 47789986 589999999999987532221111110 011 112356789999999999999999998754
No 55
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.26 E-value=0.046 Score=60.96 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=41.3
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc--------------cccccCCceeeeeeeecceeEEe
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TDadG~y~~~~L~pG~Y~I~ 374 (1201)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||-|.|-
T Consensus 105 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip 172 (256)
T cd03458 105 LFVHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIP 172 (256)
T ss_pred EEEEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCC
Confidence 4578999999999999999998 3321 13899999999999999999774
No 56
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.24 E-value=0.045 Score=60.63 Aligned_cols=48 Identities=33% Similarity=0.437 Sum_probs=40.7
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc--------------cccccCCceeeeeeeecceeEE
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TDadG~y~~~~L~pG~Y~I 373 (1201)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|-|
T Consensus 100 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Ypi 166 (247)
T cd03462 100 LLFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQI 166 (247)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCC
Confidence 4578999999999999999998 3321 1389999999999999999976
No 57
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.23 E-value=0.045 Score=61.78 Aligned_cols=49 Identities=31% Similarity=0.533 Sum_probs=41.3
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc--------------cccccCCceeeeeeeecceeEEe
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TDadG~y~~~~L~pG~Y~I~ 374 (1201)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||-|.|-
T Consensus 125 l~l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~YpiP 192 (282)
T cd03460 125 LVMHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGVP 192 (282)
T ss_pred EEEEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcCC
Confidence 4578999999999999999998 3321 13899999999999999999763
No 58
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.18 E-value=0.052 Score=57.86 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=40.1
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc------------------cccccCCceeeeeeeecceeEE
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE------------------RSITDRDGYYKLDQVTSNRYTI 373 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~------------------~~~TDadG~y~~~~L~pG~Y~I 373 (1201)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|..
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~ 107 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG 107 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC
Confidence 4689999999999999999998 2211 1379999999999999999974
No 59
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=94.17 E-value=0.046 Score=61.82 Aligned_cols=49 Identities=24% Similarity=0.474 Sum_probs=41.1
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc--------------cccccCCceeeeeeeecceeEEe
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TDadG~y~~~~L~pG~Y~I~ 374 (1201)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||-|.|-
T Consensus 129 l~v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~YpiP 196 (285)
T TIGR02439 129 LFLHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGCP 196 (285)
T ss_pred EEEEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcCC
Confidence 4578999999999999999998 3321 13899999999999999999763
No 60
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.16 E-value=0.07 Score=55.53 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=45.3
Q ss_pred ccceEEEe-ecCceEEEEEEEEeCCcceeecCCCCCC-Ccc--ccccceeeeecCCcceeeceecccceeee
Q 000982 222 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGN-ALG--ERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1201)
Q Consensus 222 ~vsG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~-~~~--~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1201)
.+.|+|.+ +|+||+||.|.++..+..-....+.... .+. +........||++|+|+|..+.||.|-+-
T Consensus 17 ~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~p 88 (158)
T cd03459 17 ILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPWR 88 (158)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCCC
Confidence 57889986 5899999999999875322111110000 000 11113578999999999999999999863
No 61
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=94.11 E-value=0.048 Score=61.49 Aligned_cols=49 Identities=31% Similarity=0.467 Sum_probs=41.5
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc--------------cccccCCceeeeeeeecceeEEe
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TDadG~y~~~~L~pG~Y~I~ 374 (1201)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|-
T Consensus 121 l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypip 188 (277)
T cd03461 121 CFVHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPIP 188 (277)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCC
Confidence 4689999999999999999998 3321 13899999999999999999873
No 62
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=94.09 E-value=0.07 Score=52.18 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=41.7
Q ss_pred cCCCCcceeEEEeccCC---CeeeeeeecCccceee-----eeecCcceeeeccCCCcE
Q 000982 144 KGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF-----KNIIPGKYKLRASHPNLS 194 (1201)
Q Consensus 144 ~g~plaGv~V~L~~~~g---~~i~sttTd~~G~f~F-----~~l~PG~Y~l~~~~~g~~ 194 (1201)
.|.|.+|+.|+|...++ +.+.+..||+||+..- ..+.+|.|+|++.-..|.
T Consensus 12 ~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf 70 (112)
T cd05822 12 TGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYF 70 (112)
T ss_pred CCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhh
Confidence 47999999999987654 4688999999999863 357789999998766664
No 63
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.72 E-value=0.073 Score=57.16 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=40.3
Q ss_pred eeeeeEEeeCCCcceeeEEEEE-----cCcc-------------------cccccCCceeeeeeeecceeEE
Q 000982 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l-----~G~~-------------------~~~TDadG~y~~~~L~pG~Y~I 373 (1201)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|.+
T Consensus 40 l~l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 40 IRLEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 4689999999999999999998 2210 1379999999999999999986
No 64
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=93.70 E-value=0.09 Score=56.07 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=44.6
Q ss_pred ccceEEEe-ecCceEEEEEEEEeCCcceeecCCCCCCCc----cccccceeeeecCCcceeeceecccceee
Q 000982 222 EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNAL----GERKALCHAVSDADGKFMFKSVPCGQYEL 288 (1201)
Q Consensus 222 ~vsG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~----~~g~~~~~~~TD~~G~f~f~~LppG~Y~v 288 (1201)
.+.|+|.+ +++||+||.|.++..+..-. -.+..+.. .+........||++|+|+|..+.||.|-.
T Consensus 38 ~l~G~V~D~~g~Pi~gA~VeiWqad~~G~--Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~ 107 (185)
T cd03463 38 TLEGRVYDGDGAPVPDAMLEIWQADAAGR--YAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG 107 (185)
T ss_pred EEEEEEECCCCCCCCCCEEEEEcCCCCCc--cCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC
Confidence 47889885 58999999999998753321 11111100 01112346899999999999999999974
No 65
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.66 E-value=0.12 Score=56.50 Aligned_cols=62 Identities=31% Similarity=0.489 Sum_probs=51.3
Q ss_pred eeEEeeeEeeeecCccccccCCCCcceeEEEeccC--C----------C------eeeeeeecCccceeeeeecCcceee
Q 000982 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G----------D------LISSVITSSEGSYLFKNIIPGKYKL 186 (1201)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g----------~------~i~sttTd~~G~f~F~~l~PG~Y~l 186 (1201)
.+.|.|+|.+. ++.|++||.|++...+ | . ....+.||++|+|.|.-+.||.|-.
T Consensus 72 ~i~l~G~VlD~--------~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~ 143 (226)
T COG3485 72 RILLEGRVLDG--------NGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPW 143 (226)
T ss_pred eEEEEEEEECC--------CCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccC
Confidence 45689999984 3799999999998654 3 1 2346899999999999999999999
Q ss_pred eccCCCcE
Q 000982 187 RASHPNLS 194 (1201)
Q Consensus 187 ~~~~~g~~ 194 (1201)
.-..+.|.
T Consensus 144 ~~~~~~~R 151 (226)
T COG3485 144 RNGGPMWR 151 (226)
T ss_pred CCCCCcCc
Confidence 98888874
No 66
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=93.66 E-value=0.073 Score=51.47 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=46.3
Q ss_pred EEeeeEeeeecCccccccCCCCcceeEEEeccCC---CeeeeeeecCccceee-----eeecCcceeeeccCCCcE
Q 000982 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF-----KNIIPGKYKLRASHPNLS 194 (1201)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g---~~i~sttTd~~G~f~F-----~~l~PG~Y~l~~~~~g~~ 194 (1201)
.++-.|++. +.|.|.+|++|+|+...+ +.+.++.||+||+..- ..+.+|.|+|++....|.
T Consensus 10 ~LTTHVLDt-------a~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdYf 78 (124)
T COG2351 10 RLTTHVLDT-------ASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDYF 78 (124)
T ss_pred eeeeeeeec-------ccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchhh
Confidence 344456654 258999999999997776 4688999999999873 345678999998766664
No 67
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=93.61 E-value=0.12 Score=51.59 Aligned_cols=56 Identities=30% Similarity=0.537 Sum_probs=43.4
Q ss_pred CCCcceeEEEeccCCCe-eeeeeecCccceeeeeecCcceeeeccCCCcEEEEeeeeEEEee
Q 000982 146 GGPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (1201)
Q Consensus 146 ~plaGv~V~L~~~~g~~-i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~~~~~~~~~~V~v~ 206 (1201)
.-+++.+|.|.. |.. ..++....||.|.|.+|++|+|.|.+.++.|.+. ...|.|.
T Consensus 5 ~~~~~t~V~L~~--g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~---~~RVdV~ 61 (123)
T PF09430_consen 5 NLPSSTRVTLNG--GQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFP---PYRVDVS 61 (123)
T ss_pred cCCCCEEEEEeC--CCccceEEEecCCCEEEeCCCCCceEEEEEECCCcccc---CEEEEEe
Confidence 456788888842 322 3478899999999999999999999999999886 2445544
No 68
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=93.36 E-value=0.11 Score=58.59 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=52.7
Q ss_pred eeeeEEeecCCCCCceeEEEe--eccc------------ceeeeeeecCCCceEeecccCCceEEEEEEEecC--CCccc
Q 000982 948 ATGTITLLSGQPKDGVSVEAR--SESK------------GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG--FGSTK 1011 (1201)
Q Consensus 948 ~~G~V~~~~g~p~~gv~v~~~--~~~~------------~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~--~~~~~ 1011 (1201)
+.|+|.+.+|+|++|+.|++- +.++ ..++-..||++|+|+++-+.||. |-|-...+.+ +..-.
T Consensus 135 v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~-YpiP~dGp~G~lL~~~G 213 (281)
T TIGR02438 135 FSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAP-YQIPTDGPTGKFIAAAG 213 (281)
T ss_pred EEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCC-cCCCCCCchHHHHHhcc
Confidence 489999999999999999983 1111 24778999999999999999997 4432211000 00011
Q ss_pred ccccCCceEEEEecc
Q 000982 1012 IERASPESVTVKVGS 1026 (1201)
Q Consensus 1012 ~~~~~P~~~~v~~~~ 1026 (1201)
-...-|.|+.+.|..
T Consensus 214 rh~~RpaHIHf~V~a 228 (281)
T TIGR02438 214 GHPWRPAHLHLKVSA 228 (281)
T ss_pred cCCCCCCEEEEEEEC
Confidence 223457888887753
No 69
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=93.35 E-value=0.093 Score=51.81 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=45.1
Q ss_pred EeeeEeeeecCccccccCCCCcceeEEEeccC-C---CeeeeeeecCcccee--e--eeecCcceeeeccCCCcE
Q 000982 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G---DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNLS 194 (1201)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~-g---~~i~sttTd~~G~f~--F--~~l~PG~Y~l~~~~~g~~ 194 (1201)
|+=.|++.. .|.|.+|+.|+|+..+ + +.+.+.+||+||+.. + ..+.+|.|+|++.-..|.
T Consensus 9 ittHVLDt~-------~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf 76 (121)
T cd05821 9 LMVKVLDAV-------RGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTKAYW 76 (121)
T ss_pred cEEEEEECC-------CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEehhHhh
Confidence 445666642 5899999999998654 3 458899999999995 2 245689999998665554
No 70
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=93.16 E-value=0.16 Score=56.53 Aligned_cols=55 Identities=18% Similarity=0.398 Sum_probs=44.0
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--C------------CeeeeeeecCccceeeeeecCcceeeec
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 188 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g------------~~i~sttTd~~G~f~F~~l~PG~Y~l~~ 188 (1201)
..|.|+|.+. +|.|++||.|+++..+ | ..-....||++|+|.|.-+.||.|-+--
T Consensus 99 l~v~G~V~D~--------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~YpiP~ 167 (246)
T TIGR02465 99 LLIRGTVRDL--------SGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQIPD 167 (246)
T ss_pred EEEEEEEEcC--------CCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCCCC
Confidence 4678999874 3699999999999655 3 1124678999999999999999998743
No 71
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=93.16 E-value=0.15 Score=55.48 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=48.3
Q ss_pred cCcccceEEEeecCceEEEEEEEEeCCcceeecCCCCCCCccccccceeeeecCCcceeeceecccceeeeeecc
Q 000982 219 PGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYK 293 (1201)
Q Consensus 219 ~G~~vsG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~ 293 (1201)
.|-.+..+|.-+|+|++|+.|.+....... .........+||++|++.|.-..+|.|.|.+.+.
T Consensus 149 ~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~-----------~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~ 212 (215)
T PF10670_consen 149 AGDPLPFQVLFDGKPLAGAEVEAFSPGGWY-----------DVEHEAKTLKTDANGRATFTLPRPGLWLIRASHK 212 (215)
T ss_pred CCCEEEEEEEECCeEcccEEEEEEECCCcc-----------ccccceEEEEECCCCEEEEecCCCEEEEEEEEEe
Confidence 355677788889999999999998763210 0000136799999999999988899999999654
No 72
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.13 E-value=0.16 Score=55.66 Aligned_cols=55 Identities=31% Similarity=0.529 Sum_probs=43.5
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--C----C-------------eeeeeeecCccceeeeeecCcceee
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G----D-------------LISSVITSSEGSYLFKNIIPGKYKL 186 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g----~-------------~i~sttTd~~G~f~F~~l~PG~Y~l 186 (1201)
+.|+|+|++. ++.|++||.|+++..+ | . .-....||++|+|+|.-|.||.|.+
T Consensus 61 i~l~G~V~D~--------~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 61 IIVHGRVLDE--------DGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred EEEEEEEECC--------CCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4578999974 3689999999999654 3 1 1235779999999999999999987
Q ss_pred ec
Q 000982 187 RA 188 (1201)
Q Consensus 187 ~~ 188 (1201)
.-
T Consensus 133 p~ 134 (220)
T TIGR02422 133 GN 134 (220)
T ss_pred CC
Confidence 54
No 73
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=93.01 E-value=0.11 Score=50.63 Aligned_cols=51 Identities=16% Similarity=0.376 Sum_probs=40.2
Q ss_pred cCCCCcceeEEEeccC--C--CeeeeeeecCccceee----eeecCcceeeeccCCCcE
Q 000982 144 KGGGPSNVNVELLSHS--G--DLISSVITSSEGSYLF----KNIIPGKYKLRASHPNLS 194 (1201)
Q Consensus 144 ~g~plaGv~V~L~~~~--g--~~i~sttTd~~G~f~F----~~l~PG~Y~l~~~~~g~~ 194 (1201)
.|.|.+|+.|+|...+ + +.+.+.+||+||+..= ..+.+|.|+|++.-..|.
T Consensus 12 ~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Yf 70 (113)
T cd05469 12 RGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSYW 70 (113)
T ss_pred CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHhH
Confidence 5899999999998754 2 4578999999999852 356789999998665553
No 74
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=92.86 E-value=0.18 Score=56.30 Aligned_cols=56 Identities=23% Similarity=0.436 Sum_probs=44.7
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--C------------CeeeeeeecCccceeeeeecCcceeeecc
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRAS 189 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g------------~~i~sttTd~~G~f~F~~l~PG~Y~l~~~ 189 (1201)
..+.|+|++. ++.|++||.|.++..+ | ..-....||++|+|.|.-+.||.|-+-..
T Consensus 105 l~l~G~V~D~--------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip~d 174 (256)
T cd03458 105 LFVHGTVTDT--------DGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIPPD 174 (256)
T ss_pred EEEEEEEEcC--------CCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCCCC
Confidence 4578999975 3699999999998655 3 11246789999999999999999988643
No 75
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=92.82 E-value=0.19 Score=54.01 Aligned_cols=53 Identities=23% Similarity=0.390 Sum_probs=42.2
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--CCe-----------------eeeeeecCccceeeeeecCcceee
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--GDL-----------------ISSVITSSEGSYLFKNIIPGKYKL 186 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g~~-----------------i~sttTd~~G~f~F~~l~PG~Y~l 186 (1201)
..+.|+|++. ++.|++||.|+++..+ |.. -....||++|+|+|.-|.||.|-.
T Consensus 40 l~l~G~V~D~--------~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 40 IRLEGRVLDG--------DGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEEEECC--------CCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 4578999874 3699999999999655 200 124689999999999999999987
No 76
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=92.69 E-value=0.16 Score=45.20 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=38.4
Q ss_pred eeeEEEEEcCcccccccCCceeeeeeeecceeEEeeeeeeeeeccceeeEeecCC
Q 000982 340 VEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 394 (1201)
Q Consensus 340 l~Ga~V~l~G~~~~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~ 394 (1201)
.+||.|++||+....|. ..+..|++|.|+|++++++|.-... .+.+.++.
T Consensus 10 p~gA~V~vdg~~~G~tp----~~~~~l~~G~~~v~v~~~Gy~~~~~-~v~v~~~~ 59 (71)
T PF08308_consen 10 PSGAEVYVDGKYIGTTP----LTLKDLPPGEHTVTVEKPGYEPYTK-TVTVKPGE 59 (71)
T ss_pred CCCCEEEECCEEeccCc----ceeeecCCccEEEEEEECCCeeEEE-EEEECCCC
Confidence 46899999998887443 4777799999999999999855443 46666654
No 77
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=92.67 E-value=0.19 Score=57.00 Aligned_cols=55 Identities=33% Similarity=0.538 Sum_probs=44.0
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--C------------CeeeeeeecCccceeeeeecCcceeeec
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 188 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g------------~~i~sttTd~~G~f~F~~l~PG~Y~l~~ 188 (1201)
..|.|+|.+. +++|++||.|+++..+ | ..-....||++|+|+|.-+.||.|-+-.
T Consensus 129 l~v~G~V~D~--------~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~YpiP~ 197 (285)
T TIGR02439 129 LFLHGQVTDA--------DGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGCPP 197 (285)
T ss_pred EEEEEEEECC--------CCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcCCC
Confidence 4578999874 3689999999998655 3 1124678999999999999999998754
No 78
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=92.67 E-value=0.18 Score=57.07 Aligned_cols=55 Identities=29% Similarity=0.541 Sum_probs=43.8
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--CC------------eeeeeeecCccceeeeeecCcceeeec
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--GD------------LISSVITSSEGSYLFKNIIPGKYKLRA 188 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g~------------~i~sttTd~~G~f~F~~l~PG~Y~l~~ 188 (1201)
..++|+|++. +++|++||.|.++..+ |. .-....||++|+|+|.-+.||.|-+--
T Consensus 125 l~l~G~V~D~--------~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~YpiP~ 193 (282)
T cd03460 125 LVMHGTVTDT--------DGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGVPP 193 (282)
T ss_pred EEEEEEEECC--------CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcCCC
Confidence 4578999874 3689999999999655 31 123678999999999999999998754
No 79
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=92.59 E-value=0.21 Score=55.53 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=43.5
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--CC------------eeeeeeecCccceeeeeecCcceeeec
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--GD------------LISSVITSSEGSYLFKNIIPGKYKLRA 188 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g~------------~i~sttTd~~G~f~F~~l~PG~Y~l~~ 188 (1201)
..+.|+|++. ++.|++||.|+++..+ |. .-....||++|+|.|.-+.||.|-+--
T Consensus 100 l~l~G~V~D~--------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~YpiP~ 168 (247)
T cd03462 100 LLFRGTVKDL--------AGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQIPN 168 (247)
T ss_pred EEEEEEEEcC--------CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCCCC
Confidence 3578999874 3689999999999655 31 123578999999999999999998754
No 80
>smart00095 TR_THY Transthyretin.
Probab=92.46 E-value=0.15 Score=50.40 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=44.7
Q ss_pred EeeeEeeeecCccccccCCCCcceeEEEeccC-C---CeeeeeeecCcccee--e--eeecCcceeeeccCCCcE
Q 000982 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G---DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNLS 194 (1201)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~-g---~~i~sttTd~~G~f~--F--~~l~PG~Y~l~~~~~g~~ 194 (1201)
|+=.|++.. .|.|.+|+.|+|+..+ + +.+.+..||+||+.. + ..+.+|.|+|++.-..|.
T Consensus 6 lTtHVLDt~-------~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf 73 (121)
T smart00095 6 LMVKVLDAV-------RGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFDTKSYW 73 (121)
T ss_pred eEEEEEECC-------CCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccceEEEEEEehhHhH
Confidence 444566542 5899999999998754 3 458899999999995 2 346789999998655554
No 81
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=92.46 E-value=0.21 Score=56.46 Aligned_cols=55 Identities=24% Similarity=0.465 Sum_probs=44.4
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--C------------CeeeeeeecCccceeeeeecCcceeeec
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 188 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g------------~~i~sttTd~~G~f~F~~l~PG~Y~l~~ 188 (1201)
..+.|+|++. ++.|++||.|.++..+ | ..-....||++|+|.|.-+.||.|-+-.
T Consensus 121 l~v~G~V~D~--------~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypip~ 189 (277)
T cd03461 121 CFVHGRVTDT--------DGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPIPT 189 (277)
T ss_pred EEEEEEEEcC--------CCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCCC
Confidence 4578999974 3699999999999654 3 1124678999999999999999999854
No 82
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=92.33 E-value=0.21 Score=54.65 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=49.6
Q ss_pred eeeeeEEeecCCCCCceeEEEeec-c-c-----------------ceeeeeeecCCCceEeecccCCceEEEEEEEecCC
Q 000982 947 SATGTITLLSGQPKDGVSVEARSE-S-K-----------------GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF 1007 (1201)
Q Consensus 947 s~~G~V~~~~g~p~~gv~v~~~~~-~-~-----------------~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~ 1007 (1201)
-+.|+|.+.+|+|++||.|++--- . + ..++...||++|+|+++-+.||. |-+-
T Consensus 67 ~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~-Yp~p------- 138 (220)
T cd03464 67 IVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGA-YPWG------- 138 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCC-ccCC-------
Confidence 358999999999999999998411 1 0 13667899999999999999997 4321
Q ss_pred CcccccccCCceEEEEecc
Q 000982 1008 GSTKIERASPESVTVKVGS 1026 (1201)
Q Consensus 1008 ~~~~~~~~~P~~~~v~~~~ 1026 (1201)
..-....|.|+.+.|..
T Consensus 139 --~~r~~~RppHIH~~V~a 155 (220)
T cd03464 139 --NHPNAWRPAHIHFSLFG 155 (220)
T ss_pred --CCCCCCcCCeEEEEEEC
Confidence 10112346787777653
No 83
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=92.33 E-value=0.22 Score=59.20 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=51.1
Q ss_pred EEeeeEeeeecCccccccCCCCcceeEEEeccCCCeeeeeeecCccceeeeeecCcceeeeccCCCcEEEEeeeeEEEee
Q 000982 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (1201)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~g~~~~~~~~~~V~v~ 206 (1201)
.|.|.|++. +|.|+++|+|++...+ ...+|..+|-|==- |+||+|.|.++++||.... .+|+|.
T Consensus 379 GIkG~V~D~--------~G~~I~NA~IsV~gin----Hdv~T~~~GDYWRL-L~PG~y~vta~A~Gy~~~t---k~v~V~ 442 (500)
T KOG2649|consen 379 GIKGLVFDD--------TGNPIANATISVDGIN----HDVTTAKEGDYWRL-LPPGKYIITASAEGYDPVT---KTVTVP 442 (500)
T ss_pred ccceeEEcC--------CCCccCceEEEEecCc----CceeecCCCceEEe-eCCcceEEEEecCCCccee---eEEEeC
Confidence 488999885 4799999999996543 35778888988644 8999999999999998762 356555
Q ss_pred c
Q 000982 207 F 207 (1201)
Q Consensus 207 ~ 207 (1201)
.
T Consensus 443 ~ 443 (500)
T KOG2649|consen 443 P 443 (500)
T ss_pred C
Confidence 4
No 84
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=92.00 E-value=0.21 Score=54.27 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=45.9
Q ss_pred eeEEeeeEeeeecCccccccCCCCcceeEEEeccCCCe-----eeeeeecCccceeeeeecCcceeeeccC
Q 000982 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDL-----ISSVITSSEGSYLFKNIIPGKYKLRASH 190 (1201)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~-----i~sttTd~~G~f~F~~l~PG~Y~l~~~~ 190 (1201)
|-.+..+|+-. |+|++|+.|.+...++.. ....+||++|++.|.--.||.|.|.+.+
T Consensus 150 g~~~~~~vl~~---------GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVLFD---------GKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEEC---------CeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 34566777753 699999999998765432 5679999999999998899999999865
No 85
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=91.14 E-value=0.075 Score=51.99 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=39.6
Q ss_pred EeeeEeeeecCccccccCCCCcceeEEEeccC--C--CeeeeeeecCcccee-----eeeecCcceeeeccCC
Q 000982 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYL-----FKNIIPGKYKLRASHP 191 (1201)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g--~~i~sttTd~~G~f~-----F~~l~PG~Y~l~~~~~ 191 (1201)
|+=.|++.. .|.|.+|+.|+|...+ + ..+.+.+||+||+.. -..+.+|.|+|.+.-.
T Consensus 3 iStHVLDt~-------~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 68 (112)
T PF00576_consen 3 ISTHVLDTT-------TGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTG 68 (112)
T ss_dssp EEEEEEETT-------TTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHH
T ss_pred cEEEEeeCC-------CCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHH
Confidence 444566542 5799999999998554 2 567899999999993 2356789999987543
No 86
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=89.94 E-value=8.2 Score=53.86 Aligned_cols=184 Identities=18% Similarity=0.245 Sum_probs=99.3
Q ss_pred cCCCCcceeEEEeccCCCeeeeeeecCccceeeee-ecCcceeeeccCC-CcEEE-Eeee----eEEEeec---cCcee-
Q 000982 144 KGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKN-IIPGKYKLRASHP-NLSVE-VRGS----TEVELGF---ENGEV- 212 (1201)
Q Consensus 144 ~g~plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~-l~PG~Y~l~~~~~-g~~~~-~~~~----~~V~v~~---~~~~v- 212 (1201)
++.|++|+.+.+.+.+|+++.+.+||++|+..|.+ -.+..|.+..... +|... ..+. ..+.|.. .+..+
T Consensus 316 sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~g~~~~~~~~k 395 (1621)
T COG2373 316 SGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVEGRAAPGYGLK 395 (1621)
T ss_pred CCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCccccccccccceecCCCceE
Confidence 58999999999999999999999999999999997 5566666655433 23221 0000 1122221 11001
Q ss_pred -----eeeEeecCcccceEEE--e-ecC-ceEEEEEEEE--eCCcceeecCCCCCCCccccccceeeeecCCcceeec--
Q 000982 213 -----DDIFFAPGYEIRGLVV--A-QGN-PILGVHIYLY--SDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFK-- 279 (1201)
Q Consensus 213 -----~~~l~i~G~~vsG~V~--~-~g~-Pl~Ga~V~L~--~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~-- 279 (1201)
+..+-.+|=.+...+. + ++. ++.++.+.+. +.++..+ .......|++|-++|.
T Consensus 396 ~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~--------------~~~~~~~~~~G~~~~~~~ 461 (1621)
T COG2373 396 VYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVL--------------RTLTITLDEEGLYELSFP 461 (1621)
T ss_pred EEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEECCCCcEE--------------EEEEEeccccCceEEeee
Confidence 1111223323332222 1 244 5555555443 3332211 1234567788877664
Q ss_pred ---eecccceeeeeeccccc--e--EE---eeCCCceeeEEeeeeeeccceeEEeeeeeeeEEe--eCCCcceeeEEEE
Q 000982 280 ---SVPCGQYELVPHYKGEN--T--VF---DVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVV--DENDMGVEGVKIL 346 (1201)
Q Consensus 280 ---~LppG~Y~v~~~~~~~~--~--~~---~~~P~~~~vtV~~~~~~l~~~f~~~g~sv~G~V~--d~~G~pl~Ga~V~ 346 (1201)
+-+.|.|++...+.+.. . .| ++.|..+.|.+..+.... ..+-.+.+.|. .-.|.|++|.++.
T Consensus 462 l~~na~tG~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k~~~-----~~g~~v~~~v~~~yL~GaPa~g~~~~ 535 (1621)
T COG2373 462 LPENALTGGYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKTEW-----VPGKDVKIKVDLRYLYGAPAAGLTVQ 535 (1621)
T ss_pred CCCCCCcceEEEEEEeCCccceeeeeEEhhHhCCceEEEecccccccc-----cCCCcEEEEEEEEecCCCcccCceee
Confidence 23568899999765532 1 12 256777666655432221 12223333332 2257788777775
No 87
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=89.05 E-value=0.32 Score=47.66 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=37.9
Q ss_pred eeeEEeeC-CCcceeeEEEEE---c--Cccc----ccccCCceee-----eeeeecceeEEeeeeeee
Q 000982 328 VGGRVVDE-NDMGVEGVKILV---D--GHER----SITDRDGYYK-----LDQVTSNRYTIEAVKVHY 380 (1201)
Q Consensus 328 v~G~V~d~-~G~pl~Ga~V~l---~--G~~~----~~TDadG~y~-----~~~L~pG~Y~I~~~~~~y 380 (1201)
|+=.|+|. .|+|.+|+.|.| + +... ++||+||+.. -..+.+|.|+|.+....|
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 70 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDY 70 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHH
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHh
Confidence 44468887 899999999999 2 2222 5999999983 235678999999887776
No 88
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=88.93 E-value=0.55 Score=43.17 Aligned_cols=37 Identities=30% Similarity=0.570 Sum_probs=32.2
Q ss_pred cCCCCCceeEEEeecc----cceeeeeeecCCCceEeeccc
Q 000982 956 SGQPKDGVSVEARSES----KGYYEETVTDTSGSYRLRGLH 992 (1201)
Q Consensus 956 ~g~p~~gv~v~~~~~~----~~~~~~~~Td~~G~~~i~gL~ 992 (1201)
+|+|.+++.|++.+.+ .....+++||++|+|.|.|=.
T Consensus 7 ~~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~ 47 (80)
T PF01060_consen 7 GGKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGST 47 (80)
T ss_pred CCccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEc
Confidence 6899999999998654 457889999999999999963
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=88.41 E-value=1.6e+02 Score=43.34 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=55.9
Q ss_pred eCCCceeeeeeecCCCCCcceeecCccceEEeeCccccchhhhheeeeccceeeccccCCcEEEEEEeecccCCCCceee
Q 000982 448 VPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKK 527 (1201)
Q Consensus 448 L~PG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V~~p~~~I~f~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~ 527 (1201)
-.||.|.|.++...+. |. ...++.|+|..|+.++.++..-..-. .. ...+..+.+...-.+ |...
T Consensus 1751 ~~~G~y~VtVta~N~v---ss--~~~s~~V~VqepV~GL~i~~~~~~~~---~~---~~ag~~v~F~a~vst----GsnV 1815 (2740)
T TIGR00864 1751 PSAGLHLVTMKAFNEL---GS--ANASEEVDVQEPISGLKIRAADAGEQ---NF---FAADSSVCFQGELAT----GTNV 1815 (2740)
T ss_pred cCCceEEEEEEEEccc---cc--cceeEEEEEEeccccceEecCCCCcc---cc---eecCcEEEEEEEccC----CCee
Confidence 6689999999986432 21 22356667767777766543211000 00 001233444332221 1233
Q ss_pred EEEee--------cCCcceeecccCCcceEEEEeecCCccccCCCceeeeeeeeeeeec
Q 000982 528 TVSLT--------DDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVG 578 (1201)
Q Consensus 528 ~~~~T--------d~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~~~v~V~ 578 (1201)
.+.++ ..+-.++|.. ||.|.|++... ...+|...+..+.|+
T Consensus 1816 sw~W~f~~g~s~~gk~v~~Tf~~--aG~ytV~L~As--------N~vs~~~~s~~~~VQ 1864 (2740)
T TIGR00864 1816 SWCWAIDGGSSKMGKHACMTFPD--AGTFAIRLNAS--------NAVSGKSASREFFAE 1864 (2740)
T ss_pred EEEEEeCCCCccccceeEEecCC--CeEEEEEEEEE--------cccCcceeeeeEEEE
Confidence 33332 2222367766 99999999864 244666666666665
No 90
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=88.30 E-value=1.4 Score=42.90 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=45.9
Q ss_pred eeEEeeeEeeeecCccccccCCCCcceeEEEeccCC----CeeeeeeecCccceee----eeecCcceeeeccCCCc
Q 000982 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG----DLISSVITSSEGSYLF----KNIIPGKYKLRASHPNL 193 (1201)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g----~~i~sttTd~~G~f~F----~~l~PG~Y~l~~~~~g~ 193 (1201)
|-.|+-.|++..+ |.|.+||.|.|+...+ +.+.+..|+++|+-.. ..+.||.|+++.....|
T Consensus 20 ~~~itahVLd~s~-------GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y 89 (132)
T KOG3006|consen 20 GPPITAHVLDISR-------GSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPY 89 (132)
T ss_pred CCCcEeEEeeccc-------CCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccc
Confidence 3456677877533 7899999999874433 5688999999999742 23789999999866555
No 91
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=88.05 E-value=0.57 Score=41.69 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=48.4
Q ss_pred CceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCceeEecCCCcceeEEEEEEEE
Q 000982 874 IPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRV 944 (1201)
Q Consensus 874 L~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~ 944 (1201)
-+||.+.|.|. +.. ..-+.+..|+||.|.++..+.+|. +-.+.|+|++|++..+.+..++.
T Consensus 10 p~gA~V~vdg~--~~G------~tp~~~~~l~~G~~~v~v~~~Gy~--~~~~~v~v~~~~~~~v~~~L~~~ 70 (71)
T PF08308_consen 10 PSGAEVYVDGK--YIG------TTPLTLKDLPPGEHTVTVEKPGYE--PYTKTVTVKPGETTTVNVTLEPQ 70 (71)
T ss_pred CCCCEEEECCE--Eec------cCcceeeecCCccEEEEEEECCCe--eEEEEEEECCCCEEEEEEEEEEC
Confidence 34688888875 222 122467789999999999999997 77899999999999999988764
No 92
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=87.77 E-value=1 Score=48.28 Aligned_cols=57 Identities=32% Similarity=0.390 Sum_probs=42.6
Q ss_pred eEEeeeEeeeecCccccccCCCCcceeEEEeccC--C----C---------------eeeeeeecCccceeeeeecCcce
Q 000982 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G----D---------------LISSVITSSEGSYLFKNIIPGKY 184 (1201)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g----~---------------~i~sttTd~~G~f~F~~l~PG~Y 184 (1201)
..+.|+|.+.. ++.|++||.|.++..+ | . .-....||++|+|+|.-+.||.|
T Consensus 27 l~l~g~V~D~~-------~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y 99 (188)
T cd03457 27 LTLDLQVVDVA-------TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWY 99 (188)
T ss_pred EEEEEEEEeCC-------CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCC
Confidence 35678998741 3589999999998654 3 0 11246899999999999999999
Q ss_pred eeecc
Q 000982 185 KLRAS 189 (1201)
Q Consensus 185 ~l~~~ 189 (1201)
.-++.
T Consensus 100 ~gR~~ 104 (188)
T cd03457 100 PGRAT 104 (188)
T ss_pred CCCCc
Confidence 75443
No 93
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=87.77 E-value=0.95 Score=44.37 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=64.6
Q ss_pred cEEEEEEecCCCCCCCceeEEEeecCCC--cc--cCccccCCceeee-----ccccCccccchhhhhhcc-------cCC
Q 000982 859 QISVRIYSKDDAGEPIPSVLLSLSGDDG--YR--NNSVSWAGGSFHF-----DNLFPGNFYLRPLLKEYA-------FSP 922 (1201)
Q Consensus 859 ~i~v~v~~~~~~~~pL~~vl~slsg~~~--~r--~n~~T~~~G~~~f-----~~L~PG~Y~~~~~~key~-------~~p 922 (1201)
.|+.+|.|. ..|.|-+|+.+.|...++ ++ ....||+||++.- ..+.||.|.|+.-..+|= |=|
T Consensus 2 ~lstHVLDt-~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf~~~~~~~F~p 80 (112)
T cd05822 2 PLSTHVLDT-ATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYFAARGQESFYP 80 (112)
T ss_pred CceeEEEeC-CCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhhhhcCCCccce
Confidence 477888887 569999999998876532 22 2477999999964 468899999886555442 222
Q ss_pred -CceeEecCC-CcceeEEEEEEEEEEeee
Q 000982 923 -PAQAIELGS-GESREVIFQATRVAYSAT 949 (1201)
Q Consensus 923 -~~~~i~v~~-G~~~~v~~~~~r~~~s~~ 949 (1201)
-+..|.|.+ .++-+|-+-..+-+||.|
T Consensus 81 ~V~i~F~i~~~~~HYHvPlLlSP~sYSTY 109 (112)
T cd05822 81 EVEVRFTITDPTEHYHVPLLLSPFGYSTY 109 (112)
T ss_pred eeEEEEEECCCCCCEEEeEEecCCceecc
Confidence 345577877 577788888888787754
No 94
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=87.54 E-value=0.9 Score=41.73 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=39.7
Q ss_pred ceEEEeecCceEEEEEEEEeCCcceeecCCCCCCCccccccceeeeecCCcceeeceecccceeeee
Q 000982 224 RGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVP 290 (1201)
Q Consensus 224 sG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~ 290 (1201)
+|++.=.++|++|+.|.|+..+.. ..-..+..+.||++|+|.+.+=...-+.+.+
T Consensus 1 ~G~L~C~~~P~~~~~V~L~e~d~~------------~~Ddll~~~~Td~~G~F~l~G~~~e~~~i~P 55 (80)
T PF01060_consen 1 KGQLMCGGKPAKNVKVKLWEDDYF------------DPDDLLDETKTDSDGNFELSGSTNEFTTIEP 55 (80)
T ss_pred CeEEEeCCccCCCCEEEEEECCCC------------CCCceeEEEEECCCceEEEEEEccCCccccE
Confidence 367777799999999999998521 0113478899999999999875544444333
No 95
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.40 E-value=65 Score=38.97 Aligned_cols=80 Identities=14% Similarity=0.345 Sum_probs=49.3
Q ss_pred ccCCcceEEEEeecCCccccCCCceeeeeeeeeeeecc--CccceeEEEEeeeEEEEeeeccccceeecCCCCeeeeee-
Q 000982 542 DVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGT--NDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKV- 618 (1201)
Q Consensus 542 ~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~~~v~V~~--~~~~~~~F~q~Gy~~~i~~sh~v~~~~~~~~~~~~~~~l- 618 (1201)
++-||+|.+.+.++ + .|++....+.+.. .....+.+.+++|......+.++-++++..+-...+++|
T Consensus 224 e~t~g~y~~~i~~~---------g-~ye~~~~av~l~d~~t~dLkls~~~k~~~ftEl~~s~~~~~i~~~~t~sf~V~Ie 293 (513)
T COG1470 224 EITPGKYVVLIAKK---------G-IYEKKKRAVKLNDGETKDLKLSVTEKKSYFTELNSSDIYLEISPSTTASFTVSIE 293 (513)
T ss_pred EecCcceEEEeccc---------c-ceecceEEEEcCCCcccceeEEEEeccceEEEeecccceeEEccCCceEEEEEEc
Confidence 57899999998743 2 3566666666653 345567888888877766666665666543332334555
Q ss_pred ecC--ceeEEEeCCc
Q 000982 619 KKG--SQHICVESPG 631 (1201)
Q Consensus 619 ~kG--~~~~c~~~~G 631 (1201)
++| ....|++..|
T Consensus 294 N~g~~~d~y~Le~~g 308 (513)
T COG1470 294 NRGKQDDEYALELSG 308 (513)
T ss_pred cCCCCCceeEEEecc
Confidence 334 4567776544
No 96
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=87.36 E-value=0.73 Score=45.67 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=40.5
Q ss_pred cceEEEe--ecCceEEEEEEEEeCCcceeecCCCCCCCccccccceeeeecCCccee--e--ceecccceeeeee
Q 000982 223 IRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFM--F--KSVPCGQYELVPH 291 (1201)
Q Consensus 223 vsG~V~~--~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~--f--~~LppG~Y~v~~~ 291 (1201)
|+=.|.+ .|.|.+|+.|.|+..+. ....+.+...+||+|||.. + ..+.+|.|+|.+.
T Consensus 9 ittHVLDt~~G~PAaGV~V~L~~~~~------------~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~ 71 (121)
T cd05821 9 LMVKVLDAVRGSPAANVAVKVFKKTA------------DGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFD 71 (121)
T ss_pred cEEEEEECCCCccCCCCEEEEEEecC------------CCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEe
Confidence 3334554 49999999999987520 0112347899999999995 2 3456899999984
No 97
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.35 E-value=34 Score=41.21 Aligned_cols=134 Identities=19% Similarity=0.356 Sum_probs=77.2
Q ss_pred ccccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhh-cccCCCceeEecCCCcc
Q 000982 856 KLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE-YAFSPPAQAIELGSGES 934 (1201)
Q Consensus 856 ~l~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~ke-y~~~p~~~~i~v~~G~~ 934 (1201)
+.++.-+.+.|++ |++.+-+++..-.. + .-|+..|..-+ +..||.|-+.--.|. |. .....+.+.+|.+
T Consensus 185 ~~a~~~l~~vd~~--G~gv~~~~v~~g~e-~----~ets~~g~~~~-e~t~g~y~~~i~~~g~ye--~~~~av~l~d~~t 254 (513)
T COG1470 185 SKAQSKLRLVDDD--GAGVPKALVKDGNE-S----FETSSKGNLEV-EITPGKYVVLIAKKGIYE--KKKRAVKLNDGET 254 (513)
T ss_pred CcceEEEEEEccC--CCccchheeecCce-e----EEeecccceeE-EecCcceEEEecccccee--cceEEEEcCCCcc
Confidence 3455566777765 88888777654222 2 34566676666 788999955444444 66 4588899999999
Q ss_pred eeEEEEEEEE--EEeeeeeE-EeecCCCCCceeE----------------EEeecccceeeeeeecCCCceEeec--ccC
Q 000982 935 REVIFQATRV--AYSATGTI-TLLSGQPKDGVSV----------------EARSESKGYYEETVTDTSGSYRLRG--LHP 993 (1201)
Q Consensus 935 ~~v~~~~~r~--~~s~~G~V-~~~~g~p~~gv~v----------------~~~~~~~~~~~~~~Td~~G~~~i~g--L~p 993 (1201)
..+.+.-.+. .|...-+= .-+-..|-.-+.| ++.+...+...+.+ +|.+||.- |.|
T Consensus 255 ~dLkls~~~k~~~ftEl~~s~~~~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Ft---eg~~~vt~vkL~~ 331 (513)
T COG1470 255 KDLKLSVTEKKSYFTELNSSDIYLEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFT---EGELRVTSVKLKP 331 (513)
T ss_pred cceeEEEEeccceEEEeecccceeEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEe---eCceEEEEEEecC
Confidence 7766666555 34322111 1122223233222 33333334445555 78888875 568
Q ss_pred CceEEEEEE
Q 000982 994 DTTYVIKVV 1002 (1201)
Q Consensus 994 g~~y~v~~~ 1002 (1201)
|..=.|.++
T Consensus 332 gE~kdvtle 340 (513)
T COG1470 332 GEEKDVTLE 340 (513)
T ss_pred CCceEEEEE
Confidence 866555554
No 98
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=87.27 E-value=0.82 Score=54.65 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=62.3
Q ss_pred cccccccccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhhhhhcccCCCceeEecC
Q 000982 851 SFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELG 930 (1201)
Q Consensus 851 ~f~~~~l~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~ 930 (1201)
.|-.+..-+|...|.|.. |+|+++|.+++.|- +.+..|.++|-+- .=|.||+|.+.+.+.+|. |..+.++|.
T Consensus 322 ~~~~~vh~GikG~V~d~~--g~~i~~a~i~v~g~---~~~v~t~~~Gdyw-Rll~pG~y~v~~~a~gy~--~~~~~~~v~ 393 (405)
T cd03869 322 VFMEQVHRGIKGVVRDKT--GKGIPNAIISVEGI---NHDIRTASDGDYW-RLLNPGEYRVTAHAEGYT--SSTKNCEVG 393 (405)
T ss_pred HHHHHHhcCceEEEECCC--CCcCCCcEEEEecC---ccceeeCCCCceE-EecCCceEEEEEEecCCC--cccEEEEEc
Confidence 344445567888998873 89999999999985 3577788888763 358999999999999998 778888888
Q ss_pred CC-cceeEEE
Q 000982 931 SG-ESREVIF 939 (1201)
Q Consensus 931 ~G-~~~~v~~ 939 (1201)
.+ ..+.+.|
T Consensus 394 ~~~~~~~~~f 403 (405)
T cd03869 394 YEMGPTQCNF 403 (405)
T ss_pred CCCCceeecc
Confidence 65 4455544
No 99
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=85.79 E-value=1.5 Score=42.06 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=37.3
Q ss_pred eeeeeEEeeCCCcceeeEEEEE----cCcc------cccccCCceeee--eeeecceeEEeeeeeee
Q 000982 326 FSVGGRVVDENDMGVEGVKILV----DGHE------RSITDRDGYYKL--DQVTSNRYTIEAVKVHY 380 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l----~G~~------~~~TDadG~y~~--~~L~pG~Y~I~~~~~~y 380 (1201)
..+.-+|.|.+|+||+|..|.+ ++.. .++||++|.+.+ ..-.+|.|+|++...+.
T Consensus 25 ~tltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~ 91 (100)
T PF02369_consen 25 NTLTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGG 91 (100)
T ss_dssp EEEEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTE
T ss_pred EEEEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCc
Confidence 3566689999999999999998 2211 257999998766 34467999999987653
No 100
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=85.37 E-value=2.3 Score=40.80 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=36.8
Q ss_pred EeeeEeeeecCccccccCCCCcceeEEE--eccCCCeee---eeeecCccceeee--eecCcceeeeccCCCcEE
Q 000982 128 LLGRVVGAIGGESCLDKGGGPSNVNVEL--LSHSGDLIS---SVITSSEGSYLFK--NIIPGKYKLRASHPNLSV 195 (1201)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L--~~~~g~~i~---sttTd~~G~f~F~--~l~PG~Y~l~~~~~g~~~ 195 (1201)
+.-+|.+. +|+|++|..|.+ ....+.... ..+||++|.+.+. .-.+|.|.|.++-.+...
T Consensus 27 ltatV~D~--------~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~~ 93 (100)
T PF02369_consen 27 LTATVTDA--------NGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGST 93 (100)
T ss_dssp EEEEEEET--------TSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEEE
T ss_pred EEEEEEcC--------CCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCcce
Confidence 44566664 479999999999 333343322 4789999998765 447789999887665543
No 101
>smart00095 TR_THY Transthyretin.
Probab=85.28 E-value=1 Score=44.61 Aligned_cols=54 Identities=15% Similarity=0.318 Sum_probs=39.3
Q ss_pred EEEe--ecCceEEEEEEEEeCCcceeecCCCCCCCccccccceeeeecCCccee--e--ceecccceeeeee
Q 000982 226 LVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFM--F--KSVPCGQYELVPH 291 (1201)
Q Consensus 226 ~V~~--~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~--f--~~LppG~Y~v~~~ 291 (1201)
.|.+ .|.|.+|+.|.|+..+. ......+.+.+||+|||.. + ..+.+|.|+|.+.
T Consensus 9 HVLDt~~G~PAagv~V~L~~~~~------------~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~ 68 (121)
T smart00095 9 KVLDAVRGSPAVNVAVKVFKKTE------------EGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFD 68 (121)
T ss_pred EEEECCCCccCCCCEEEEEEeCC------------CCceEEEEEEecCCCccccCccCcccccceEEEEEEe
Confidence 4554 49999999999987520 0111347899999999995 2 3567899999984
No 102
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=85.15 E-value=1.1 Score=43.67 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=42.0
Q ss_pred eeeeEEeeC-CCcceeeEEEEE---cCcc---c--ccccCCceeee-----eeeecceeEEeeeeeee
Q 000982 327 SVGGRVVDE-NDMGVEGVKILV---DGHE---R--SITDRDGYYKL-----DQVTSNRYTIEAVKVHY 380 (1201)
Q Consensus 327 sv~G~V~d~-~G~pl~Ga~V~l---~G~~---~--~~TDadG~y~~-----~~L~pG~Y~I~~~~~~y 380 (1201)
.++-.|+|. .|+|-+|++|.| +|.. + +.||+||+-.. +.+.+|.|.+++....|
T Consensus 10 ~LTTHVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdY 77 (124)
T COG2351 10 RLTTHVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDY 77 (124)
T ss_pred eeeeeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchh
Confidence 455567786 899999999998 4442 1 48999999873 45678999999988776
No 103
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=84.44 E-value=6.9 Score=51.46 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=83.6
Q ss_pred CccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-ce
Q 000982 890 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1201)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1201)
...||..|...+.+|.|=+.- |-+ +..+.+++-+.+.|.-.+|.-..+.|...+. ..+.=++..-+|+|+| |+
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g-~~~ll~l~~~~G~~lPfGa 746 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVG-TNALIRITRTNGKPLALGT 746 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEEEEEEeee-eEEEEEEECCCCCcCCCce
Confidence 468999999999999985543 333 2457888888888999999888888877655 3456678888999987 66
Q ss_pred eEEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
.|.+.++++...+......+|...|+||.|.....|+.
T Consensus 747 ~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~w 784 (814)
T PRK15235 747 VLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASW 784 (814)
T ss_pred EEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEEE
Confidence 66665544323456899999999999999987665544
No 104
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=82.52 E-value=2.9 Score=39.35 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=40.4
Q ss_pred eeeeEEeeCCCcceeeEEEEE--cCc-------ccccccCCceeeee--eeecceeEEeeeeeee
Q 000982 327 SVGGRVVDENDMGVEGVKILV--DGH-------ERSITDRDGYYKLD--QVTSNRYTIEAVKVHY 380 (1201)
Q Consensus 327 sv~G~V~d~~G~pl~Ga~V~l--~G~-------~~~~TDadG~y~~~--~L~pG~Y~I~~~~~~y 380 (1201)
.|.=+|+|.+|.|++++.|.+ +|. ....||.+|+..+. .-.+|.|+|+++.+++
T Consensus 21 ~i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 21 TLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENG 85 (92)
T ss_pred EEEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCC
Confidence 455688999999999988877 332 12489999987763 3356999999987764
No 105
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=81.45 E-value=2 Score=46.13 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=38.3
Q ss_pred cEEEEEEecCCCCCCCceeEEEeecCC------C----------------cccCccccCCceeeeccccCcccc
Q 000982 859 QISVRIYSKDDAGEPIPSVLLSLSGDD------G----------------YRNNSVSWAGGSFHFDNLFPGNFY 910 (1201)
Q Consensus 859 ~i~v~v~~~~~~~~pL~~vl~slsg~~------~----------------~r~n~~T~~~G~~~f~~L~PG~Y~ 910 (1201)
.|.++|.|. ++++||+++.+.|=-.+ + .|.-..||++|.+.|..+.||.|-
T Consensus 28 ~l~g~V~D~-~~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 28 TLDLQVVDV-ATCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEeC-CCCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 346788886 34899999999764332 1 233356999999999999999994
No 106
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=81.43 E-value=3.3 Score=40.64 Aligned_cols=90 Identities=14% Similarity=0.263 Sum_probs=63.9
Q ss_pred cEEEEEEecCCCCCCCceeEEEeecCC---Ccc--cCccccCCceeee----ccccCccccchhhhhhcc-------cCC
Q 000982 859 QISVRIYSKDDAGEPIPSVLLSLSGDD---GYR--NNSVSWAGGSFHF----DNLFPGNFYLRPLLKEYA-------FSP 922 (1201)
Q Consensus 859 ~i~v~v~~~~~~~~pL~~vl~slsg~~---~~r--~n~~T~~~G~~~f----~~L~PG~Y~~~~~~key~-------~~p 922 (1201)
.|+.+|.|. ..|.|-+|+.+.|...+ .++ ....||+||++.= ..+.||.|.++.-..+|= |=|
T Consensus 2 ~lStHVLDt-~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Yf~~~~~~~F~p 80 (113)
T cd05469 2 PLMVKVLDA-VRGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSYWKALGITPFHE 80 (113)
T ss_pred CceEEEEeC-CCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHhHhhCCCCCCcc
Confidence 477889887 66999999999886643 222 3578999999952 467899999887655552 223
Q ss_pred -CceeEecCC--CcceeEEEEEEEEEEeee
Q 000982 923 -PAQAIELGS--GESREVIFQATRVAYSAT 949 (1201)
Q Consensus 923 -~~~~i~v~~--G~~~~v~~~~~r~~~s~~ 949 (1201)
-+..|.|.+ .|+-+|=+-..+.+||.|
T Consensus 81 ~V~i~F~v~d~~~~HYHvPLLlSP~gYSTY 110 (113)
T cd05469 81 YAEVVFTANDSGHRHYTIALLLSPFSYSTT 110 (113)
T ss_pred eEEEEEEECCCCCCCEEeCEEecCCeeeee
Confidence 235577765 567778777777777754
No 107
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=81.10 E-value=2.3 Score=37.04 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=17.5
Q ss_pred cCCc-ceeecccCCcceEEEEeec
Q 000982 533 DDSD-QFLFRDVLPGKYRLEVKRT 555 (1201)
Q Consensus 533 d~~G-~f~f~~L~PG~Y~v~~~~~ 555 (1201)
.... .+.|.+|+||+|+|.+...
T Consensus 25 ~~~~~~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 25 GSYSNSISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp SSTS-EEEEES--SEEEEEEEEEE
T ss_pred CCCcEEEEEEeCCCEEEEEEEEEE
Confidence 3444 9999999999999999865
No 108
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=79.86 E-value=35 Score=36.69 Aligned_cols=127 Identities=17% Similarity=0.293 Sum_probs=73.2
Q ss_pred cceeEEEEEeccccc-cc-ccccCCCc-eEEEEeee----cc---eEEEEEcCCCCCCcCCCceeEEEcCCCCCCCccee
Q 000982 51 YSHVTVELRTLDGLV-KE-STQCAPNG-YYFIPVYD----KG---SFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDIN 120 (1201)
Q Consensus 51 lsgv~V~L~~~~G~~-~~-~t~t~~nG-~y~i~~l~----~G---~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~din 120 (1201)
-+-|+|+|+ .+|.. .. .+.+++|+ .|.|..|+ .| .|+|+...-+||. ..+++. .|.
T Consensus 22 P~sI~v~L~-~ng~~~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~~Y~-------~~v~g~------tIT 87 (187)
T cd00222 22 PAKISVQLL-ANGEKYVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVPDYE-------TPIIGE------TIT 87 (187)
T ss_pred CCEEEEEEE-eCCeeeeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCCCcE-------EEeccc------EEE
Confidence 357999999 45543 22 22344566 56666655 45 7999666666664 233332 222
Q ss_pred EEEe---eeEEeeeEeeeecCccccccCCCCcceeEEEeccCCCeeee--eee-cCccceeeeeecCc------ceeeec
Q 000982 121 FRFT---GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISS--VIT-SSEGSYLFKNIIPG------KYKLRA 188 (1201)
Q Consensus 121 f~~~---g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~i~s--ttT-d~~G~f~F~~l~PG------~Y~l~~ 188 (1201)
-... -..|+++-.-. |+ ..+..+.-++|+|+.. |..... ..+ +.+=.|.|.+||-. .|+|.+
T Consensus 88 Nt~~~~~~t~i~v~K~W~-d~----~~~~rP~sI~V~L~ad-G~~~~~~~~l~~~n~W~~tf~~Lp~y~~Gk~i~YtV~E 161 (187)
T cd00222 88 NKYINKETTSFSGKKIWK-ND----TAGQRPEEIQVQLLQD-GQATGKTKIVTKSNDWTYTFKDLPKYDTGNEYKYSVEE 161 (187)
T ss_pred EeecCCceEEEEEEEEEc-CC----CCCCCCceEEEEEEeC-CEEcceEEEeecCCCcEEEecCCccccCCCEEeEEEEE
Confidence 1111 24455544332 21 1245667899999864 543322 223 34568999999886 689988
Q ss_pred c--CCCcEEEE
Q 000982 189 S--HPNLSVEV 197 (1201)
Q Consensus 189 ~--~~g~~~~~ 197 (1201)
. .+||....
T Consensus 162 ~~v~~GY~~~~ 172 (187)
T cd00222 162 VTVVDGYKTTY 172 (187)
T ss_pred ecCCCCcEeEe
Confidence 5 36887553
No 109
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=79.64 E-value=2.3 Score=40.51 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=29.1
Q ss_pred ecCCCCCceeEEEeecc----cceeeeeeecCCCceEee
Q 000982 955 LSGQPKDGVSVEARSES----KGYYEETVTDTSGSYRLR 989 (1201)
Q Consensus 955 ~~g~p~~gv~v~~~~~~----~~~~~~~~Td~~G~~~i~ 989 (1201)
....|++|+.|.+.-.+ .....+++||++|.|+|.
T Consensus 16 ~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 16 RAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred ccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEE
Confidence 44679999999998554 246889999999999998
No 110
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=79.36 E-value=19 Score=50.45 Aligned_cols=169 Identities=20% Similarity=0.271 Sum_probs=105.9
Q ss_pred EEEEEEecCCCCCCCceeEEEeecCCC-cccCccccCCceeeecc-ccCccccchh--------h-hhhcccCCCceeEe
Q 000982 860 ISVRIYSKDDAGEPIPSVLLSLSGDDG-YRNNSVSWAGGSFHFDN-LFPGNFYLRP--------L-LKEYAFSPPAQAIE 928 (1201)
Q Consensus 860 i~v~v~~~~~~~~pL~~vl~slsg~~~-~r~n~~T~~~G~~~f~~-L~PG~Y~~~~--------~-~key~~~p~~~~i~ 928 (1201)
+.|.+..- .+|+|.+|+.+++...++ .+.+.+||++|+..|.+ ..|..|.+.. + +.+=.|+=+...|+
T Consensus 307 l~v~v~sl-~sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~ 385 (1621)
T COG2373 307 LDVFVQSL-SSGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVE 385 (1621)
T ss_pred EEEEEEec-cCCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCcccccccccc
Confidence 45555555 459999999999998877 78899999999999997 5555554332 1 11111111111111
Q ss_pred --cCCCcceeEEEEEEEEEEe------eeeeEEeecCC-CCCceeEEEe--ecc--cceeeeeeecCCCceEeecccCC-
Q 000982 929 --LGSGESREVIFQATRVAYS------ATGTITLLSGQ-PKDGVSVEAR--SES--KGYYEETVTDTSGSYRLRGLHPD- 994 (1201)
Q Consensus 929 --v~~G~~~~v~~~~~r~~~s------~~G~V~~~~g~-p~~gv~v~~~--~~~--~~~~~~~~Td~~G~~~i~gL~pg- 994 (1201)
..+|....+-+..-|--|- +.+..+..++. ++.++-+++. +.+ .......++|++|.++++==.|-
T Consensus 386 g~~~~~~~~k~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~n 465 (1621)
T COG2373 386 GRAAPGYGLKVYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPEN 465 (1621)
T ss_pred ceecCCCceEEEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCC
Confidence 1233333344433343332 45555677777 8888888875 333 23566677889999887633322
Q ss_pred ---ceEEEEEEEecC--C--CcccccccCCceEEEEeccCcc
Q 000982 995 ---TTYVIKVVKKDG--F--GSTKIERASPESVTVKVGSGDI 1029 (1201)
Q Consensus 995 ---~~y~v~~~~~~~--~--~~~~~~~~~P~~~~v~~~~~d~ 1029 (1201)
-.|+++++.... . .+.+++-..|+++.|.+.....
T Consensus 466 a~tG~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k~ 507 (1621)
T COG2373 466 ALTGGYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKT 507 (1621)
T ss_pred CCcceEEEEEEeCCccceeeeeEEhhHhCCceEEEecccccc
Confidence 269999986542 2 4678888999999998764443
No 111
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=78.48 E-value=37 Score=36.53 Aligned_cols=121 Identities=19% Similarity=0.387 Sum_probs=67.8
Q ss_pred CCCCcceeEEEeccCCCe-ee-eeeecCcc-ceeeeeec----Cc---ceeeecc-CCCcEEEEeeeeEEEeeccCceee
Q 000982 145 GGGPSNVNVELLSHSGDL-IS-SVITSSEG-SYLFKNII----PG---KYKLRAS-HPNLSVEVRGSTEVELGFENGEVD 213 (1201)
Q Consensus 145 g~plaGv~V~L~~~~g~~-i~-sttTd~~G-~f~F~~l~----PG---~Y~l~~~-~~g~~~~~~~~~~V~v~~~~~~v~ 213 (1201)
+.-+.-++|.|++. |.. .. -..+.+++ .|.|.+|| -| .|.|.+. -++|...+.+. .+ .
T Consensus 19 ~~RP~sI~v~L~~n-g~~~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~~Y~~~v~g~-tI--T------- 87 (187)
T cd00222 19 KKRPAKISVQLLAN-GEKYVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVPDYETPIIGE-TI--T------- 87 (187)
T ss_pred CCCCCEEEEEEEeC-CeeeeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCCCcEEEeccc-EE--E-------
Confidence 45667899999864 422 22 23445555 68999998 46 6999875 47777653321 12 1
Q ss_pred eeEee-cCcccceE-EEee---cCceEEEEEEEEeCCcceeecCCCCCCCccccccceeeee-cCCcceeeceeccc---
Q 000982 214 DIFFA-PGYEIRGL-VVAQ---GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVS-DADGKFMFKSVPCG--- 284 (1201)
Q Consensus 214 ~~l~i-~G~~vsG~-V~~~---g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~T-D~~G~f~f~~LppG--- 284 (1201)
+.... .-.++++. +..+ +....-++|.|+..... . + .....+ +.+=.|+|.+||..
T Consensus 88 Nt~~~~~~t~i~v~K~W~d~~~~~rP~sI~V~L~adG~~-~------------~--~~~~l~~~n~W~~tf~~Lp~y~~G 152 (187)
T cd00222 88 NKYINKETTSFSGKKIWKNDTAGQRPEEIQVQLLQDGQA-T------------G--KTKIVTKSNDWTYTFKDLPKYDTG 152 (187)
T ss_pred EeecCCceEEEEEEEEEcCCCCCCCCceEEEEEEeCCEE-c------------c--eEEEeecCCCcEEEecCCccccCC
Confidence 11110 11234443 2232 33346799999986310 0 0 012223 34568999999976
Q ss_pred ---ceeeeee
Q 000982 285 ---QYELVPH 291 (1201)
Q Consensus 285 ---~Y~v~~~ 291 (1201)
.|+|.+.
T Consensus 153 k~i~YtV~E~ 162 (187)
T cd00222 153 NEYKYSVEEV 162 (187)
T ss_pred CEEeEEEEEe
Confidence 4777773
No 112
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=77.71 E-value=4 Score=39.76 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=43.1
Q ss_pred eeeeEEeeCCCcceeeEEEEE-c------------CcccccccCCceeeeeeeecceeEEeeeeee
Q 000982 327 SVGGRVVDENDMGVEGVKILV-D------------GHERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (1201)
Q Consensus 327 sv~G~V~d~~G~pl~Ga~V~l-~------------G~~~~~TDadG~y~~~~L~pG~Y~I~~~~~~ 379 (1201)
.|+=.|.+.+|+|+.|++|.| . |..+..||.+|.+...+..-|+|.|-..+.+
T Consensus 43 pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 43 PVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred cEEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCC
Confidence 344467888999999999998 1 2223699999999999999999999887755
No 113
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=77.56 E-value=4.7 Score=44.69 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=45.1
Q ss_pred eeEEeeeEeeeecCccccccCCCCcceeEEEe-------c---cCC---CeeeeeeecCccceeeeeecCcceeeeccCC
Q 000982 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELL-------S---HSG---DLISSVITSSEGSYLFKNIIPGKYKLRASHP 191 (1201)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~-------~---~~g---~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~ 191 (1201)
|--+.|+|+.. |.|++|++|.+. + ..+ .......||++|.|+|-.+..|.+-+.+.|.
T Consensus 171 ge~f~~~vl~~---------GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~ 241 (264)
T COG5266 171 GEVFRGKVLDN---------GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHK 241 (264)
T ss_pred CCeEEEEEEEC---------CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeecc
Confidence 44567888873 699999999986 1 112 2235678999999999999999999988764
Q ss_pred C
Q 000982 192 N 192 (1201)
Q Consensus 192 g 192 (1201)
+
T Consensus 242 ~ 242 (264)
T COG5266 242 T 242 (264)
T ss_pred C
Confidence 4
No 114
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=75.33 E-value=3.1 Score=36.16 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=14.5
Q ss_pred ceeeceecccceeeeeec
Q 000982 275 KFMFKSVPCGQYELVPHY 292 (1201)
Q Consensus 275 ~f~f~~LppG~Y~v~~~~ 292 (1201)
++.|.+||||+|+|.+..
T Consensus 30 ~~~~~~L~~G~Y~l~V~a 47 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRA 47 (66)
T ss_dssp EEEEES--SEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEE
Confidence 999999999999999853
No 115
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=74.82 E-value=18 Score=47.86 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=82.1
Q ss_pred ccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-cee
Q 000982 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1201)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1201)
..||..|...+.+|.|=+.- |-+ +..+-+++-+.+.+.-.+|.-..+.|...+.. .+.=+++..+|+|+| |+.
T Consensus 701 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~-~~l~~l~~~~G~~lPfGa~ 779 (845)
T PRK15294 701 VDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGY-KALMVLTRINNLPVPFGAT 779 (845)
T ss_pred CEECCCCeEEeCCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEEEEEEeeee-EEEEEEECCCCCcCCceEE
Confidence 58999999999999874333 333 34677788888889999999999999888766 566678888999986 666
Q ss_pred EEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
|...+.++ .+......+|...|+||.|.....|+.
T Consensus 780 V~~~~~~g--~~~g~Vg~~G~vyl~gl~~~~~L~v~w 814 (845)
T PRK15294 780 VSSLTKPD--NHSSFVGDAGQAWLTGLEKQGRLLVKW 814 (845)
T ss_pred EEccCCCC--ceEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 66433221 255789999999999999877665554
No 116
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=74.39 E-value=6.9 Score=43.41 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=47.2
Q ss_pred CcccceEEEeecCceEEEEEEEEeCCcceeecCCCCCCCccccccceeeeecCCcceeeceecccceeeeeeccc
Q 000982 220 GYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKG 294 (1201)
Q Consensus 220 G~~vsG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~ 294 (1201)
|-.+.|+|..+|+||+||+|.+.-..-...+........ ........||++|+|.|--+..|-+.+.+.+.+
T Consensus 171 ge~f~~~vl~~GkPv~nA~V~v~~~n~~~~d~~a~~~~~---ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~~ 242 (264)
T COG5266 171 GEVFRGKVLDNGKPVPNATVEVEFDNIDTKDNRAKTGNT---EKTALVQFTDDKGEVSFIPLRAGVWGFAVEHKT 242 (264)
T ss_pred CCeEEEEEEECCccCCCcEEEEEEecccccccccccCCC---CCcceEEEcCCCceEEEEEccCceEEEEeeccC
Confidence 445678999899999999999863210000000001111 112356789999999999999999999886544
No 117
>KOG4802 consensus Adhesion-type protein [Extracellular structures]
Probab=74.36 E-value=8.9 Score=44.95 Aligned_cols=106 Identities=12% Similarity=0.236 Sum_probs=59.7
Q ss_pred ceeeeccccCcccc-chhhhh------hcccCCCceeEecCCC-----cceeEEEEEEEEEEeeeeeEE---eecCCCCC
Q 000982 897 GSFHFDNLFPGNFY-LRPLLK------EYAFSPPAQAIELGSG-----ESREVIFQATRVAYSATGTIT---LLSGQPKD 961 (1201)
Q Consensus 897 G~~~f~~L~PG~Y~-~~~~~k------ey~~~p~~~~i~v~~G-----~~~~v~~~~~r~~~s~~G~V~---~~~g~p~~ 961 (1201)
-++.|.+++||.+| ||-.++ +|. .++..+-+... ....+.+.|....++..=+|- +.+.-|++
T Consensus 209 ~~~~~t~~rPgRwyefrvaavn~~G~rGFs--~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~ 286 (516)
T KOG4802|consen 209 NTYIFTDMRPGRWYEFRVAAVNAYGFRGFS--EPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVE 286 (516)
T ss_pred ceeeeeecCcceeEEEEEeeeecccccccC--CCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCCcce
Confidence 38899999999988 554333 333 22222222211 124566777555555554443 23344555
Q ss_pred ceeEEEeec-c-------cceeeeeeecCCCceEeecccCCceEEEEEEEecCC
Q 000982 962 GVSVEARSE-S-------KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF 1007 (1201)
Q Consensus 962 gv~v~~~~~-~-------~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~ 1007 (1201)
.-.|.-.+. + ....-+-.|+ +|.|.+|+|+|.|.|++.+-.+.
T Consensus 287 ~Yki~Ws~~v~s~k~~m~tks~~~k~th---q~si~~L~Pns~Y~VevqAi~y~ 337 (516)
T KOG4802|consen 287 KYKITWSLYVNSAKASMITKSSYVKDTH---QFSIKELLPNSSYYVEVQAISYL 337 (516)
T ss_pred eeEEEeehhhhhhhhhcccccceeeccc---hhhhhhcCCCCeEEEEEEEEEec
Confidence 554442211 1 1122234455 66799999999999999985443
No 118
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=74.35 E-value=2.5 Score=41.03 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=33.1
Q ss_pred ccceeEEEEEecccccccccccCC-Cc-eEE--EEeeecceEEEEEcCCCC-CC
Q 000982 50 DYSHVTVELRTLDGLVKESTQCAP-NG-YYF--IPVYDKGSFVIKVNGPEG-WS 98 (1201)
Q Consensus 50 ~lsgv~V~L~~~~G~~~~~t~t~~-nG-~y~--i~~l~~G~Y~l~~~~P~G-~~ 98 (1201)
++..|+|++.|.+|.++++-.... .+ .+. +..+++|.|.|+++...| |.
T Consensus 46 ~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g~~l 99 (106)
T PF11589_consen 46 PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNGTYL 99 (106)
T ss_dssp --SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC-EE
T ss_pred CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCCCEE
Confidence 456899999998899988864433 33 445 555899999999999886 53
No 119
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=74.13 E-value=22 Score=47.03 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=82.3
Q ss_pred ccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-cee
Q 000982 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1201)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1201)
..||..|...+.+|.|=+.- |-+ +..+-+++-+.+.|...+|.-..+.|...+. ..+.=+|+.-+|+|+| |+.
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~v~F~~~~g-~~~ll~l~~~~G~~lP~Ga~ 776 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRARFDTRVG-YRVLMSLKQANGNAVPFGAT 776 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEeee-eEEEEEEEcCCCCcCCccEE
Confidence 58999999999999985543 323 2457777778888899999888888877665 3456678888999998 888
Q ss_pred EEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
|.+.+.++ ........+|...|+||.+.....|+.
T Consensus 777 V~~~~~~~--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 811 (842)
T PRK15207 777 ATLIDTTK--EASSIVGEEGQLYISGMPEEGELQVSW 811 (842)
T ss_pred EEecCCCC--ceEEEECCCCEEEEEcCCCCceEEEEE
Confidence 77655432 244789999999999999886555544
No 120
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.95 E-value=21 Score=47.02 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=85.4
Q ss_pred CccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-ce
Q 000982 890 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1201)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1201)
...||..|...+..|.|=++- |-+ +.++.++.-+.+.+...+|.-..++|... ..+.+.-+++.-+|+|+| |+
T Consensus 693 ~~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~~~F~t~-~g~~~li~l~~~dG~~lPfGa 771 (835)
T COG3188 693 GVRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVLADFDTR-IGYRALITLRRADGSPLPFGA 771 (835)
T ss_pred CcEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEEEEEeee-ceeEEEEEEECCCCCcCCCce
Confidence 367999999999999985554 222 35789999999999999999998888765 888899999999999988 55
Q ss_pred eEEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
.|.....+ +.....+.+|+..|+||.++..-.|+.
T Consensus 772 ~v~~~~~~---~~~g~Vg~~G~vyl~gl~~~~~L~V~w 806 (835)
T COG3188 772 EVTDEGGG---QNVGIVGDDGQVYLRGLPPKGRLLVRW 806 (835)
T ss_pred EEEECCCc---eEEEEEecCCeEEEecCCCCCeEEEEE
Confidence 55444322 267889999999999999997444433
No 121
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=71.49 E-value=12 Score=33.41 Aligned_cols=49 Identities=37% Similarity=0.529 Sum_probs=35.3
Q ss_pred CCCCCceeEEEeecccc--eeeeeeecCCCceEeecccCCceEEEEEEEec
Q 000982 957 GQPKDGVSVEARSESKG--YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1201)
Q Consensus 957 g~p~~gv~v~~~~~~~~--~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1201)
+.++.+..|+....+.. .+........-.|.|.||.|++.|.+++.+-.
T Consensus 27 ~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 27 NGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEE
T ss_pred CCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEe
Confidence 55677777777755422 34444455555899999999999999999753
No 122
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=69.01 E-value=8.1 Score=36.32 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=41.4
Q ss_pred cccccEEEEEEecCCCCCCCceeEE--EeecCC--Ccc-cCccccCCceeeec--cccCccccchhhhhhc
Q 000982 855 QKLSQISVRIYSKDDAGEPIPSVLL--SLSGDD--GYR-NNSVSWAGGSFHFD--NLFPGNFYLRPLLKEY 918 (1201)
Q Consensus 855 ~~l~~i~v~v~~~~~~~~pL~~vl~--slsg~~--~~r-~n~~T~~~G~~~f~--~L~PG~Y~~~~~~key 918 (1201)
.-+..|.++|.|+. |+|+++..+ ++.++. .+. ....||++|+..+. +-.+|.|.+++....+
T Consensus 17 ~d~~~i~v~v~D~~--Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 17 SDAITLTATVTDAN--GNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENG 85 (92)
T ss_pred cccEEEEEEEECCC--CCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCC
Confidence 45677889999885 899999665 455542 111 23579999987664 4467777776654443
No 123
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=68.68 E-value=25 Score=38.85 Aligned_cols=59 Identities=19% Similarity=0.378 Sum_probs=36.7
Q ss_pred eeEEeeeeeeeEEeeC-CCcce----eeEEEEE--cC----ccc-ccccCCceeeeeeeecceeEEeeeee
Q 000982 320 KFQVTGFSVGGRVVDE-NDMGV----EGVKILV--DG----HER-SITDRDGYYKLDQVTSNRYTIEAVKV 378 (1201)
Q Consensus 320 ~f~~~g~sv~G~V~d~-~G~pl----~Ga~V~l--~G----~~~-~~TDadG~y~~~~L~pG~Y~I~~~~~ 378 (1201)
++..+...+.|+|+|. +|+|| .|+++.| .| ... .....||.|+=..|=.|+|.|.....
T Consensus 16 NYD~P~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G 86 (222)
T PF12866_consen 16 NYDEPDSTLTGRIIDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNG 86 (222)
T ss_dssp ------EEEEEEEEECCTTEE----STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CT
T ss_pred CCcCCCceEEEEEEEeecCCeeeecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCC
Confidence 4555567899999985 66554 4888888 22 111 47889999977799999999998443
No 124
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=67.83 E-value=36 Score=45.21 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=78.7
Q ss_pred CccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-ce
Q 000982 890 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1201)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1201)
...||..|...+.+|.|=+.- |-+ +..+.+++-+.+.+.-.+|.-..+.|...+. ..+.=+|+.-+|+|+| |+
T Consensus 706 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g-~~~ll~l~~~~G~~lP~Ga 784 (848)
T PRK15298 706 GVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKG-YRVLLTLTRSNGEPVPFGA 784 (848)
T ss_pred CCEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEEEEEEEEee-EEEEEEEECCCCCcCCCCc
Confidence 368999999999999984443 323 2456777778888888999888888876654 4455568888999987 66
Q ss_pred eEEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
.|.+.+.+. ........+|...|+||.|.....|+.
T Consensus 785 ~v~~~~~~~--~~~g~Vg~~G~vyl~g~~~~~~l~v~w 820 (848)
T PRK15298 785 TASVDGQDA--NLASIVGDKGQVFLSGLPEEGLLLVNW 820 (848)
T ss_pred EEEEcCCCC--eeEEEECCCCEEEEEecCCCceEEEEE
Confidence 655532211 234789999999999998876555443
No 125
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=67.16 E-value=36 Score=45.09 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=80.0
Q ss_pred CccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-ce
Q 000982 890 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1201)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1201)
+..||..|...+.+|.|=+.- |-+ +..+-+++-+.+.|.-.+|.-..+.|...+. ..+.=+++.-+|+|+| |+
T Consensus 695 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g-~~~ll~l~~~~G~~lP~Ga 773 (836)
T PRK15223 695 GVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIG-ARALMTLKREDGSAIPFGA 773 (836)
T ss_pred CCEECCCCeEEeCCCCCceeceEEECCCCCCCCEEecCcEEEEEecCCcEEEEEEEEeee-EEEEEEEECCCCCcCCCCe
Confidence 468999999999999984443 323 2456777788888899999888888876655 4456678888999887 56
Q ss_pred eEEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
.|.+ +.++ ........+|...|+||.|....+|+.
T Consensus 774 ~v~~-~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~w 808 (836)
T PRK15223 774 QVTV-NGQD--GSAALVDTDSQVYLTGLADKGELTVKW 808 (836)
T ss_pred EEEe-cCCC--ceEEEECCCCEEEEEccCCCceEEEEE
Confidence 5544 2221 145889999999999999887655544
No 126
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=66.43 E-value=21 Score=35.02 Aligned_cols=91 Identities=20% Similarity=0.368 Sum_probs=63.4
Q ss_pred ccEEEEEEecCCCCCCCceeEE---EeecCCCcc--cCccccCCceeeec----cccCccccchhhhhhc-------ccC
Q 000982 858 SQISVRIYSKDDAGEPIPSVLL---SLSGDDGYR--NNSVSWAGGSFHFD----NLFPGNFYLRPLLKEY-------AFS 921 (1201)
Q Consensus 858 ~~i~v~v~~~~~~~~pL~~vl~---slsg~~~~r--~n~~T~~~G~~~f~----~L~PG~Y~~~~~~key-------~~~ 921 (1201)
..|..+|.|. ..|.|-.||.+ .+.+.+.+- ....|++||+.... -|.||.|.++-.-+-| .|-
T Consensus 21 ~~itahVLd~-s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y~~a~gv~sFy 99 (132)
T KOG3006|consen 21 PPITAHVLDI-SRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPYYKALGVESFY 99 (132)
T ss_pred CCcEeEEeec-ccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccccccCCccccc
Confidence 6677888887 55899999865 455554433 24679999998743 5789999988665555 333
Q ss_pred C-CceeEecCCC-cceeEEEEEEEEEEeee
Q 000982 922 P-PAQAIELGSG-ESREVIFQATRVAYSAT 949 (1201)
Q Consensus 922 p-~~~~i~v~~G-~~~~v~~~~~r~~~s~~ 949 (1201)
| -+..|++.++ |.-+|-+...+-.||-+
T Consensus 100 pyvevvf~in~s~qhyhvpllLsPygySTy 129 (132)
T KOG3006|consen 100 PYVEVVFNINDSTQHYHVPLLLSPYGYSTY 129 (132)
T ss_pred ccEEEEEEeccCcceEEEeEEecccceeee
Confidence 3 3566899998 66677777777777643
No 127
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=62.16 E-value=39 Score=43.91 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=30.7
Q ss_pred eeeeeEEeeCCCcceeeEEEEEcCcccccccCCceeee
Q 000982 326 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKL 363 (1201)
Q Consensus 326 ~sv~G~V~d~~G~pl~Ga~V~l~G~~~~~TDadG~y~~ 363 (1201)
+++-|++++++|.|+.+|.| +|... ..||++|.|.+
T Consensus 786 ~~yiGr~~~~~G~~l~~a~I-lN~~~-~~td~~GgF~~ 821 (895)
T PRK15310 786 RLYVGRVLDKDGRPLLDAQP-LNYPF-LSLGPSGRFSL 821 (895)
T ss_pred EEEEEEEECCCCCCccccee-ecCcc-ceecCCCCEEE
Confidence 45789999999999999977 45444 78999999998
No 128
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=61.03 E-value=2.9e+02 Score=33.04 Aligned_cols=48 Identities=25% Similarity=0.184 Sum_probs=32.1
Q ss_pred cCCcceee---cccCCcceEEEEeecCCccccCCCceeeeee-eeeeeeccCccceeEEEEe
Q 000982 533 DDSDQFLF---RDVLPGKYRLEVKRTSREASSMEDNWCWEQS-FIGVDVGTNDVKGVEFVQK 590 (1201)
Q Consensus 533 d~~G~f~f---~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~-~~~v~V~~~~~~~~~F~q~ 590 (1201)
-+||.|+- -+++||.|++.+... +-.+... ++.|.|.+..+. .+|.|.
T Consensus 168 p~DGvFT~~l~l~~~~G~Y~~~v~~~---------n~vF~R~~~q~v~V~p~Pi~-~~~~~~ 219 (374)
T TIGR03503 168 PGDGIFTGEFNLDVAPGEYRPTYQSR---------NPVFLREVEQPVLVYPLPVS-YTVIQS 219 (374)
T ss_pred CCCceEEEEeeccCCCceEEEEEEEc---------CceEEEEEEEeEEEECCCee-EEEEcc
Confidence 36788876 467899999999853 3333333 457777776644 567765
No 129
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=60.94 E-value=19 Score=39.43 Aligned_cols=71 Identities=14% Similarity=0.369 Sum_probs=49.7
Q ss_pred cceEEEEEcCCCCCCcCCCceeEEEcC---CCCCCC--cceeEEEeeeEEeeeEeeeecCccccccCCCCcceeEEEecc
Q 000982 84 KGSFVIKVNGPEGWSWNPDKVAVTVDD---TGCNGN--EDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSH 158 (1201)
Q Consensus 84 ~G~Y~l~~~~P~G~~~~p~~~~v~Vd~---~~~s~~--~dinf~~~g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~ 158 (1201)
.=-|++....|+.|...|......+|. +..... ....|.+...-|+|.-.+.. ++.|+.|+.++|.+.
T Consensus 126 ~~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~~~~~v~a~y~Le~iLieG~~~d~~-------~~~pp~Glql~L~~~ 198 (211)
T PF06427_consen 126 SPLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLSSGTTVEAVYELESILIEGHARDIT-------TGSPPRGLQLQLGTE 198 (211)
T ss_pred CceEEecCCCCCceEEEEeecCcCCCceecccCCCCceEEEEEEEeeEEEEeEEeecC-------CCCCCCCcEEEEecC
Confidence 466888899999999877655433333 111222 45678888999999888652 478999999999865
Q ss_pred CCC
Q 000982 159 SGD 161 (1201)
Q Consensus 159 ~g~ 161 (1201)
++.
T Consensus 199 ~~~ 201 (211)
T PF06427_consen 199 NGP 201 (211)
T ss_pred CCC
Confidence 543
No 130
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=60.90 E-value=90 Score=34.56 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=61.4
Q ss_pred eEEEeeeEEeeeEeeeecCccccccCCCCcceeEEEeccCC--CeeeeeeecCccceeeeeecCcceeeec-cCCC---c
Q 000982 120 NFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG--DLISSVITSSEGSYLFKNIIPGKYKLRA-SHPN---L 193 (1201)
Q Consensus 120 nf~~~g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g--~~i~sttTd~~G~f~F~~l~PG~Y~l~~-~~~g---~ 193 (1201)
|+.-+-..++|+|.+..-++.-+ ...-|++++|+..+- ..-.......||.|+=.-|=.|+|.|.. ..++ |
T Consensus 16 NYD~P~s~l~G~iiD~~tgE~i~---~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~ 92 (222)
T PF12866_consen 16 NYDEPDSTLTGRIIDVYTGEPIQ---TDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVV 92 (222)
T ss_dssp ------EEEEEEEEECCTTEE-------STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSC
T ss_pred CCcCCCceEEEEEEEeecCCeee---ecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccC
Confidence 67666678999997642222221 122499999986642 1234567789999966779999999998 6677 5
Q ss_pred EEEEeeeeEEEeeccCce----eeeeE-------eecCcccceEEEee----cCceEEEEEEEEeC
Q 000982 194 SVEVRGSTEVELGFENGE----VDDIF-------FAPGYEIRGLVVAQ----GNPILGVHIYLYSD 244 (1201)
Q Consensus 194 ~~~~~~~~~V~v~~~~~~----v~~~l-------~i~G~~vsG~V~~~----g~Pl~Ga~V~L~~~ 244 (1201)
... .+.|++. |++. +.+-+ ...|..+..++.-+ +..|.-|.+.+...
T Consensus 93 ~~d---ti~v~i~-G~t~~d~eVtPY~~I~~~~~~~~g~~v~asf~v~~~~~~~~i~~v~l~~~~t 154 (222)
T PF12866_consen 93 PVD---TIEVDIK-GNTTQDFEVTPYLRIKNAKISLNGNKVTASFKVEQIITNANIEEVQLYVSKT 154 (222)
T ss_dssp CE-----EEEEES-SCEEEEEEE-BSEEEEECEEEEETTEEEEEEEEEESS-HH-EEEEEEEEESS
T ss_pred CCc---cEEEEec-CceEEeEEeeeeEEEeccceeecCCEEEEEEEEEeccCCCceeEEEEEEecc
Confidence 443 3556665 4432 22222 23344444444421 23677776665443
No 131
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=60.24 E-value=20 Score=35.09 Aligned_cols=74 Identities=24% Similarity=0.221 Sum_probs=50.1
Q ss_pred CCCCcceeEEEeeeEEeeeEeeeecCccccccCCCCcceeEEEec--cC-CCe-----eeeeeecCccceeeeeecCcce
Q 000982 113 CNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLS--HS-GDL-----ISSVITSSEGSYLFKNIIPGKY 184 (1201)
Q Consensus 113 ~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~--~~-g~~-----i~sttTd~~G~f~F~~l~PG~Y 184 (1201)
|..+.+-++.-....|+=.|.++ .+.|+.|++|.|.. ++ .++ +.-..||.+|.+.-.+..-|+|
T Consensus 29 c~~~~es~~~k~~~pVT~hVen~--------e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y 100 (131)
T PF10794_consen 29 CIANNESAASKVVNPVTFHVENA--------EGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKY 100 (131)
T ss_pred ccccchhhhceecccEEEEEecC--------CCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceE
Confidence 44443333433333455556654 36999999999986 22 111 2347899999999999999999
Q ss_pred eeeccCCCcE
Q 000982 185 KLRASHPNLS 194 (1201)
Q Consensus 185 ~l~~~~~g~~ 194 (1201)
.+.....+-.
T Consensus 101 ~v~l~n~e~~ 110 (131)
T PF10794_consen 101 IVFLPNGETQ 110 (131)
T ss_pred EEEEcCCCce
Confidence 9988776543
No 132
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.89 E-value=24 Score=37.55 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=50.0
Q ss_pred ccceeEEEEEecccccccccccCCCceEEEEeeecceEEEEEcCCCCCCcCCCceeEEEcCC
Q 000982 50 DYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDT 111 (1201)
Q Consensus 50 ~lsgv~V~L~~~~G~~~~~t~t~~nG~y~i~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~ 111 (1201)
++-|+.++++.|+|+.+....-+..|.|.|..-.+|.|++-+..+. -..+|..+.++|+.+
T Consensus 53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~-s~mtpk~V~F~ihvg 113 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKM-STMTPKTVMFTIHVG 113 (201)
T ss_pred CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCC-CCCCceEEEEEEEEe
Confidence 5568899999999999998877778999998889999999988775 345777777776653
No 133
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=56.70 E-value=14 Score=35.03 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=28.8
Q ss_pred cCCCCCccEEEEEEecCccccccccceEEEEeeeCCCcceecc
Q 000982 783 VSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGG 825 (1201)
Q Consensus 783 v~p~l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~ 825 (1201)
-.+||+||.+.|.-.+.. +.-....+.+||++|.|++.
T Consensus 17 ~~~~l~GA~V~v~C~~~~-----~~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 17 AAKPLPGAKVSVECKDGN-----GGVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred cCccCCCCEEEEECCCCC-----CCcEEEEEEEeCCCCEEEEE
Confidence 358999999999966532 00135678999999999996
No 134
>PRK15255 fimbrial outer membrane usher protein StdB; Provisional
Probab=55.18 E-value=80 Score=41.92 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=75.7
Q ss_pred cccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-ceeE
Q 000982 892 VSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVSV 965 (1201)
Q Consensus 892 ~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~v 965 (1201)
.||..|...+.+|.|=+.- +-+ +..+-+++-+.+.|...+|....+.|...+.. .+.=+|+.-+|+|+| |+.|
T Consensus 690 ~Td~~G~avvP~l~pY~~N~i~ID~~~LP~dvei~~t~~~VvP~~GAvv~~~F~~~~g~-~~l~~l~~~~G~~lP~Ga~V 768 (829)
T PRK15255 690 VTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGYRKIDASQGE-QVLGHIRLADGASPPFGALV 768 (829)
T ss_pred ccCCCCEEEeCCCCCceeeeEEECCcCCCCCEEecccEEEEEecCCCEEEEEEEEecce-EEEEEEEcCCCCcCCCcEEE
Confidence 5999999999999884443 333 24567777788888888887777777766553 345568888999987 6655
Q ss_pred EEeecccceeeeeeecCCCceEeecccCCceEEEEEE
Q 000982 966 EARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVV 1002 (1201)
Q Consensus 966 ~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~ 1002 (1201)
.. ++++ ........+|...|+||.|...-.+.++
T Consensus 769 ~~-~~~g--~~~g~Vg~~G~vyl~gl~~~~~~~l~v~ 802 (829)
T PRK15255 769 VS-GKTG--RTAGMVGDDGLAYLTGLSGEDRRTLNVS 802 (829)
T ss_pred Ec-CCCC--ceeEEEcCCCEEEEECCCCCCCeeEEEE
Confidence 42 2222 2447899999999999986543344454
No 135
>PRK15198 outer membrane usher protein FimD; Provisional
Probab=53.77 E-value=88 Score=41.69 Aligned_cols=105 Identities=16% Similarity=0.095 Sum_probs=76.9
Q ss_pred ccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-cee
Q 000982 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1201)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1201)
..||..|...+.+|.|=+.- |-+ +..+.+++-+.+.|.-.+|.-+.+.|...+.. .+.=+++. +|+|+| |+.
T Consensus 715 ~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~nvei~~t~~~vvPt~GAvv~v~F~~~~g~-~~ll~~~~-~G~~lP~Ga~ 792 (860)
T PRK15198 715 VKTDWRGYAVMPYATVYRYNRVALDTNTMGNSTDVENNVSSVVPTQGALVRANFDTRIGV-RALITVTQ-GGKPVPFGAL 792 (860)
T ss_pred CEECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEeeee-EEEEEEcc-CCCCCCCceE
Confidence 58999999999999874332 333 24677788888889999999999998875553 33444665 899887 555
Q ss_pred EEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
|. +.++ ........+|...|+||.|.....|+.
T Consensus 793 V~--~~~~--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 825 (860)
T PRK15198 793 VR--ETSS--GITSMVGDDGQIYLSGLPLSGELLIQW 825 (860)
T ss_pred EE--CCCC--cEEEEECCCCEEEEEcCCCCceEEEEE
Confidence 54 3322 244889999999999999887666554
No 136
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=50.93 E-value=24 Score=29.17 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=21.1
Q ss_pred cEEEEEEecCCCCCCCceeEEEeecCCCc
Q 000982 859 QISVRIYSKDDAGEPIPSVLLSLSGDDGY 887 (1201)
Q Consensus 859 ~i~v~v~~~~~~~~pL~~vl~slsg~~~~ 887 (1201)
+|.++|.-.|.+|+|++++-|.|..++++
T Consensus 14 ~I~ltVt~kda~G~pv~n~~f~l~r~~~~ 42 (47)
T PF05688_consen 14 TIPLTVTVKDANGNPVPNAPFTLTRGDAK 42 (47)
T ss_pred eEEEEEEEECCCCCCcCCceEEEEecCcc
Confidence 34444444444599999999999998775
No 137
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=50.91 E-value=29 Score=38.40 Aligned_cols=43 Identities=9% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCCcceeEEEeccCCCeeeeeeecCcc--ceeeee-------ecCcceeeecc
Q 000982 146 GGPSNVNVELLSHSGDLISSVITSSEG--SYLFKN-------IIPGKYKLRAS 189 (1201)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~sttTd~~G--~f~F~~-------l~PG~Y~l~~~ 189 (1201)
.+...++|++++.+|+++++..- ..| .|..++ +++|.|++.+.
T Consensus 121 ~~a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~ 172 (223)
T PRK12813 121 ADADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVE 172 (223)
T ss_pred CCCceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEE
Confidence 56678999999999988765432 234 455543 77788888764
No 138
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=50.39 E-value=1.8e+02 Score=33.77 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=56.0
Q ss_pred CCceEeecccCCceEEEEEEEecCC--------Cccccc----ccC----CceEEEEeccCccccceEEEee-c---cce
Q 000982 983 SGSYRLRGLHPDTTYVIKVVKKDGF--------GSTKIE----RAS----PESVTVKVGSGDIKGLDFLVFE-Q---PEK 1042 (1201)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~~~~--------~~~~~~----~~~----P~~~~v~~~~~d~~~~~f~~~~-~---~~~ 1042 (1201)
.=++-|++|+|+..|.+.|=.-+.. |..... |.- .+-....+.=..-+|+.|..|+ | ..+
T Consensus 14 ~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~~~ 93 (300)
T PF10179_consen 14 KTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSSTH 93 (300)
T ss_pred CceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCCCC
Confidence 3467899999999999888653221 222111 111 1111112222233457777777 3 233
Q ss_pred eEEEEEeeccchhccccceEEEEeccCCccceeEEEeeccccceeecCCCCc-ceeeEec
Q 000982 1043 TILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLR 1101 (1201)
Q Consensus 1043 ~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~~~~~~~~~~~~~f~~~~l~~~-~y~v~~~ 1101 (1201)
-.+.=.|.... -.++|+|.. +...+.+.-.+---..|.++++.+| +|+|+++
T Consensus 94 ~~~~l~v~~C~-----G~V~v~i~r--~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~ 146 (300)
T PF10179_consen 94 QSLWLFVQSCS-----GSVRVEISR--NGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQ 146 (300)
T ss_pred ccEEEEEEeCC-----CeEEEEEEE--CCeEEeeeecccceEEEEECCCCCCCeEEEEEE
Confidence 33433343332 126676643 1222222212222245888886666 7999994
No 139
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=47.45 E-value=24 Score=32.35 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=26.3
Q ss_pred CCCcceeEEEeccCCCeeeeee--ecCccceeee---------eecCcceeeecc
Q 000982 146 GGPSNVNVELLSHSGDLISSVI--TSSEGSYLFK---------NIIPGKYKLRAS 189 (1201)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~stt--Td~~G~f~F~---------~l~PG~Y~l~~~ 189 (1201)
.+...++|.+++.+|+++++.. ..+.|.+.|. .+++|.|++++.
T Consensus 22 ~~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~ 76 (81)
T PF13860_consen 22 EDADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVT 76 (81)
T ss_dssp SSCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEE
T ss_pred CcccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEE
Confidence 4556688888888887766532 3344544443 577888888764
No 140
>PRK15193 outer membrane usher protein; Provisional
Probab=46.44 E-value=1.3e+02 Score=40.19 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=77.2
Q ss_pred cCccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-c
Q 000982 889 NNSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-G 962 (1201)
Q Consensus 889 ~n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-g 962 (1201)
....||..|...+.+|.|=+.- |-+ +..+.+++-+.+.|.-.+|.-+.+.|...+..-- .=+++. +|+|+| |
T Consensus 733 ~~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~dvel~~t~~~VvPt~GAvv~~~F~~~~g~~~-ll~l~~-~G~plPfG 810 (876)
T PRK15193 733 TGLKTDWRGYAVVPYATSYRENRIALDAASLKDNVDLENAVVNVVPTKGALVLAEFNAHVGARA-LMTLSH-QGIPLPFG 810 (876)
T ss_pred CCCeECCCCeEEECCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeEE-EEEEcc-CCcCCCCc
Confidence 3468999999999999873332 333 2467778888888899999988888887776443 235544 899987 5
Q ss_pred eeEEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 963 VSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 963 v~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
+.|. ++++ ........+|...|+||.|.....|+.
T Consensus 811 a~V~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 845 (876)
T PRK15193 811 ATVT--LDDQ--HNSGIVDDDGSVYLSGLPAQGVLHVRW 845 (876)
T ss_pred eEEE--CCCC--ceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 5554 3222 245789999999999999886655544
No 141
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=46.39 E-value=2.5e+02 Score=29.31 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=48.9
Q ss_pred eEEE-eCCCceeeee-eecCCCCCcceeec-CccceEEe--eCccccchhh---hheeeeccceee----ccccCCcEEE
Q 000982 444 FCFE-VPPGEYRLSA-MAATPESSSGILFL-PPYADVVV--KSPLLNIEFS---QALVNVLGNVAC----KERCGPLVTV 511 (1201)
Q Consensus 444 f~f~-L~PG~Y~v~~-~~~~~~~~~G~~~~-p~~~~V~V--~~p~~~I~f~---q~~a~V~G~V~~----~~~~~~~~~V 511 (1201)
|.+. |+.|.|++.+ .+.+. .|=... .....+.+ +.|...|.+. ..+..+.|.+.+ .+... ...+
T Consensus 7 fd~~~l~dG~Y~l~~~~a~D~---agN~~~~~~~~~~~iD~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~-~~~i 82 (158)
T PF13750_consen 7 FDLSTLPDGSYTLTVVTATDA---AGNTSTSTVSETFTIDNTPPTISISDGASVANGSTVYGLVNISINVTDNSD-DSKI 82 (158)
T ss_pred EEeCcCCCccEEEEEEEEEec---CCCEEEEEEeeEEEEcCCCCEEEEecCCccCCCccccceeeeEEEEEeCCC-CceE
Confidence 3445 9999999999 45332 221111 11224555 2676666222 133444444332 22221 2244
Q ss_pred EEEeecccCCCCceeeEEEe-ecCCcceeec------ccCCc-ceEEEEeec
Q 000982 512 TLMRLGQKHYDGTEKKTVSL-TDDSDQFLFR------DVLPG-KYRLEVKRT 555 (1201)
Q Consensus 512 tL~~~~~~~~~~~~~~~~~~-Td~~G~f~f~------~L~PG-~Y~v~~~~~ 555 (1201)
+.....|+. ..+...... ..++|.|.++ .|.+| .|+|++...
T Consensus 83 ~sv~l~Gg~--~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~ 132 (158)
T PF13750_consen 83 TSVSLTGGP--ASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSAT 132 (158)
T ss_pred EEEEEECCc--ccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEE
Confidence 444443321 011221222 2456676663 34445 588888754
No 142
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=45.72 E-value=83 Score=41.63 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=59.3
Q ss_pred eeeecCCcceeeceecccce-eeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-eE
Q 000982 267 HAVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-Ga 343 (1201)
.+.||..|.-.+++|.|=.. +|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+||+ |+
T Consensus 658 ~v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~-v~F~~~~g~~~l~~l~~~~G~~lPfGa 736 (801)
T PRK15304 658 PVWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSK-VDFSVLNQRRVMLNVKRADGSPLPKGV 736 (801)
T ss_pred ceEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEE-EEEEEccceEEEEEEEccCCCcCCCcE
Confidence 35899999999999986321 2222101111111111112222222222221 12432 223334456677899886 66
Q ss_pred EEEE-cCcccccccCCceeeeeeeec-ceeEEe
Q 000982 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIE 374 (1201)
Q Consensus 344 ~V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I~ 374 (1201)
.|.- +|+.+...+.+|..-+.++++ |..+|+
T Consensus 737 ~V~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 737 SIVDEKGNYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EEECCCCcEEEEEeCCCEEEEECCCCCceEEEE
Confidence 6654 566667889999999999987 566665
No 143
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=45.47 E-value=1.4e+02 Score=39.85 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=77.1
Q ss_pred ccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-cee
Q 000982 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1201)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1201)
..||..|...+.+|.|=+.- |-+ +..+.+++-+.+.|...+|.-..+.|...+. ..+.=+++.-+|+|+| |+.
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g-~~~l~~l~~~dG~~lPfGa~ 784 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFAVISG-QKAMAVLRLRDGSHPPFGAE 784 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEEEEEEeee-eEEEEEEEcCCCCcCCCceE
Confidence 47999999999999984443 333 3456777778888888888877777766554 3344467888999887 555
Q ss_pred EEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
|. +.++ ........+|...|+||.|.....|+.
T Consensus 785 V~--~~~g--~~~giVg~~G~vyL~gl~~~~~l~V~w 817 (881)
T PRK15284 785 VK--NDNQ--QQVGLVDDDGNVYLAGVKPGEHMQVFW 817 (881)
T ss_pred EE--cCCC--ceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 54 2222 245889999999999999987666554
No 144
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=44.93 E-value=1e+02 Score=40.91 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=61.8
Q ss_pred eeeecCCcceeeceecccc-eeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-eE
Q 000982 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-Ga 343 (1201)
.+.||..|.-.+++|.|=. -+|......-+...++.-....+....+.+.. ..|.+ .+..+--++.+++|+||+ |+
T Consensus 697 ~~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~-v~F~~~~g~~~ll~l~~~~G~~lP~Ga 775 (842)
T PRK15207 697 GVEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVR-ARFDTRVGYRVLMSLKQANGNAVPFGA 775 (842)
T ss_pred CceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEE-EEEEEeeeeEEEEEEEcCCCCcCCccE
Confidence 3699999999999998632 22322111101111111112222222232222 13443 233444456788999998 89
Q ss_pred EEEE-c--CcccccccCCceeeeeeeec-ceeEEee
Q 000982 344 KILV-D--GHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 344 ~V~l-~--G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
.|.+ + ++.+...+.+|.--+.++++ |..+|+-
T Consensus 776 ~V~~~~~~~~~~g~Vg~~G~vyl~gl~~~~~l~v~w 811 (842)
T PRK15207 776 TATLIDTTKEASSIVGEEGQLYISGMPEEGELQVSW 811 (842)
T ss_pred EEEecCCCCceEEEECCCCEEEEEcCCCCceEEEEE
Confidence 8887 3 33457899999999999986 5666654
No 145
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=44.71 E-value=1e+02 Score=40.89 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=61.1
Q ss_pred eeeecCCcceeeceecccc---eeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-
Q 000982 267 HAVSDADGKFMFKSVPCGQ---YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE- 341 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~---Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~- 341 (1201)
...||..|.-.++.|.|=. ..|....-+.+ .++.-....+....+.+.+ ..|.+ .+..+--++.+++|+||+
T Consensus 695 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~d--vel~~t~~~vvPt~GAiv~-~~F~~~~g~~~ll~l~~~~G~~lP~ 771 (836)
T PRK15223 695 GVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDD--AEVTQTDVRVVPTEGAVVE-AKFHTRIGARALMTLKREDGSAIPF 771 (836)
T ss_pred CCEECCCCeEEeCCCCCceeceEEECCCCCCCC--EEecCcEEEEEecCCcEEE-EEEEEeeeEEEEEEEECCCCCcCCC
Confidence 4799999999999998632 22222111111 1111112222222232222 12442 233444456778899885
Q ss_pred eEEEEEc--CcccccccCCceeeeeeeec-ceeEEee
Q 000982 342 GVKILVD--GHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 342 Ga~V~l~--G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
|+.|.++ |+.+...+.+|..-+.++++ |..+|+.
T Consensus 772 Ga~v~~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~w 808 (836)
T PRK15223 772 GAQVTVNGQDGSAALVDTDSQVYLTGLADKGELTVKW 808 (836)
T ss_pred CeEEEecCCCceEEEECCCCEEEEEccCCCceEEEEE
Confidence 7877764 45667899999999999986 5666654
No 146
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=43.98 E-value=34 Score=32.14 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=31.8
Q ss_pred EEeeCCCcceeeEEEEEcCcccccccCCceeeeeeeecceeEEeeeeee
Q 000982 331 RVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (1201)
Q Consensus 331 ~V~d~~G~pl~Ga~V~l~G~~~~~TDadG~y~~~~L~pG~Y~I~~~~~~ 379 (1201)
.++|.++.|.+|..|..|.+-+-.-+.+=+..+ +|+||+|+|++.-..
T Consensus 25 lliD~~~~~~~~~~I~~~~n~vhy~~Gqte~~I-~L~PG~htLtl~~~d 72 (87)
T PF14347_consen 25 LLIDGDGPPLANEPIPFNINGVHYGKGQTELNI-ELPPGKHTLTLQLGD 72 (87)
T ss_pred EEECCCCCcCCCCeeeecCCeEEeCCCEEEEEE-EeCCCCEEEEEEeCC
Confidence 356777888888888775444433222224556 699999999987543
No 147
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=43.44 E-value=52 Score=32.37 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=26.5
Q ss_pred cCCCceEEEEeeecceEEEEEcCCCCCCcCCCceeEEEcCC
Q 000982 71 CAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDT 111 (1201)
Q Consensus 71 t~~nG~y~i~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~ 111 (1201)
+.+++|+.+.+ +||.|.|..+.+--+...+...+++++.+
T Consensus 55 l~~g~y~~~~v-~pG~h~i~~~~~~~~~~~~~~l~~~~~~G 94 (117)
T PF11008_consen 55 LKNGGYFYVEV-PPGKHTISAKSEFSSSPGANSLDVTVEAG 94 (117)
T ss_pred eCCCeEEEEEE-CCCcEEEEEecCccCCCCccEEEEEEcCC
Confidence 44455555776 99999999877732323556667776654
No 148
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=43.33 E-value=1.4e+02 Score=39.69 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=79.4
Q ss_pred ccccCCceeeeccccCccc---cchh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-cee
Q 000982 891 SVSWAGGSFHFDNLFPGNF---YLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1201)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y---~~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1201)
..||..|...+.+|.|=+. .|-+ +..+.+++-+.+.|.-.+|.-..+.|...+. ..+.-+|...+|+|+| |+.
T Consensus 710 ~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~~~F~~~~g-~~~l~~l~~~dG~~lP~Ga~ 788 (853)
T PRK15248 710 AVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARVNFATISG-KAVLISVKMPDGGIPPMGAD 788 (853)
T ss_pred CeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEEEEEEEeec-eEEEEEEEcCCCCcCCCceE
Confidence 5799999999999988332 2333 3567888888888888999888888876655 4567788889999887 555
Q ss_pred EEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
|. +.++ ........+|...|+||.|.....|+.
T Consensus 789 V~--~~~g--~~~g~Vg~~G~vyl~~~~~~~~l~V~w 821 (853)
T PRK15248 789 VF--NGEG--TNIGMVGQSGQIYARIAHPSGSLLVRW 821 (853)
T ss_pred EE--CCCC--cEEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 54 2222 245789999999999999887666555
No 149
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=43.30 E-value=1.1e+02 Score=41.03 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=59.4
Q ss_pred eeecCCcceeeceecccc-eeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-eEE
Q 000982 268 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 344 (1201)
Q Consensus 268 ~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-Ga~ 344 (1201)
+.||..|.-.+++|.|=. -+|......-+...++.-....+....+.+.. ..|.+ .+..+-=++.+++|+|++ |+.
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~-~~F~~~~g~~~l~~l~~~dG~~lPfGa~ 784 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGY-RKFAVISGQKAMAVLRLRDGSHPPFGAE 784 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEE-EEEEEeeeeEEEEEEEcCCCCcCCCceE
Confidence 589999999999998632 22222101101111111112222222222221 12432 122333345677898886 777
Q ss_pred EEE-cCcccccccCCceeeeeeeec-ceeEEee
Q 000982 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 345 V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
|.. +|+.+...+.+|.--+.++++ |..+|+-
T Consensus 785 V~~~~g~~~giVg~~G~vyL~gl~~~~~l~V~w 817 (881)
T PRK15284 785 VKNDNQQQVGLVDDDGNVYLAGVKPGEHMQVFW 817 (881)
T ss_pred EEcCCCceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 765 566678999999999999986 5666654
No 150
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=43.23 E-value=40 Score=31.79 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=28.3
Q ss_pred ceeEEEeccCCCeeee--e-eecCccceeee-----eecCcceeeeccC
Q 000982 150 NVNVELLSHSGDLISS--V-ITSSEGSYLFK-----NIIPGKYKLRASH 190 (1201)
Q Consensus 150 Gv~V~L~~~~g~~i~s--t-tTd~~G~f~F~-----~l~PG~Y~l~~~~ 190 (1201)
.+.|+|.+.+|..+.. . .++.+|.|++. +.+.|.|+|.+..
T Consensus 37 ~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 37 PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4677788998866543 3 45899998876 2345899998866
No 151
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=42.79 E-value=1.5e+02 Score=39.58 Aligned_cols=106 Identities=18% Similarity=0.051 Sum_probs=79.2
Q ss_pred ccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-cee
Q 000982 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1201)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1201)
..||..|...+.+|.|=+.- +-+ +..+-+++-+.+.+.-.+|.-..+.|...+.. .+.=++..-+|+|+| |+.
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAvv~~~F~~~~g~-~~ll~l~~~~G~~lP~Ga~ 796 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLADFETDQGR-SAIMNITRSDGKNIPFAAD 796 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEeecce-EEEEEEECCCCCcCCCceE
Confidence 47999999999999985443 333 24577777788888888898888888776653 445568888999987 555
Q ss_pred EEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
|. +.++ ........+|...|+||.+.....|+.
T Consensus 797 V~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 829 (865)
T PRK09828 797 VY--DEQG--NVIGNVGQGGQAFVRGIEDQGELRIRW 829 (865)
T ss_pred EE--CCCC--cEEEEEeCCCEEEEEcCCCCceEEEEE
Confidence 54 3222 244789999999999999987777666
No 152
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=42.13 E-value=1.8e+02 Score=38.98 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=77.5
Q ss_pred ccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-cee
Q 000982 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1201)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1201)
..||..|...+.+|.|=+.- |-+ +..+-+++-+.+.+...+|.-..+.|...+. ..+.=+|..-+|+|+| |+.
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~~~F~~~~g-~~~l~~l~~~dG~~lPfGa~ 761 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSG-EKMMAVFRLADGDFPPFGAE 761 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEEEEEEEEee-eEEEEEEEccCCCcCCCceE
Confidence 57999999999999884332 333 2457777778888888899877777766554 3455568888999887 665
Q ss_pred EEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
|. ++++ ........+|...|+||.|+....|+.
T Consensus 762 V~--~~~g--~~~giVg~~G~vyl~g~~~~~~l~V~w 794 (881)
T PRK15273 762 VK--NERQ--QQLGLVADDGNAWLAGVKAGETLKVFW 794 (881)
T ss_pred EE--cCCC--cEEEEEcCCCEEEEecCCCCceEEEEe
Confidence 54 3222 245789999999999999987655544
No 153
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=42.08 E-value=52 Score=31.83 Aligned_cols=58 Identities=22% Similarity=0.465 Sum_probs=38.4
Q ss_pred eeeeeEEeec-CCCCCceeEEEeecc-cceeeeeeecCCC---ceEeecccCCceEEEEEEEec
Q 000982 947 SATGTITLLS-GQPKDGVSVEARSES-KGYYEETVTDTSG---SYRLRGLHPDTTYVIKVVKKD 1005 (1201)
Q Consensus 947 s~~G~V~~~~-g~p~~gv~v~~~~~~-~~~~~~~~Td~~G---~~~i~gL~pg~~y~v~~~~~~ 1005 (1201)
++.|..-.+. -+++..|.|.+.+.. ..++++..+...+ .+.|.+|..|. |.|+...+.
T Consensus 33 ~i~~~~l~I~F~~~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~-Y~l~i~~~~ 95 (106)
T PF11589_consen 33 SIDGNNLSIEFESPIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGE-YTLEITNGN 95 (106)
T ss_dssp EEETTEEEEEESS--SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEE-EEEEEEECT
T ss_pred EEeCCEEEEEEcCCCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCcc-EEEEEEeCC
Confidence 3345444333 568999999999854 5567777777777 78899998885 999998653
No 154
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=41.75 E-value=1.5e+02 Score=39.15 Aligned_cols=105 Identities=17% Similarity=0.094 Sum_probs=77.6
Q ss_pred ccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-cee
Q 000982 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1201)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1201)
..||..|...+.+|.|=+.- |-+ +..+.+++-+.+.|.-.+|.-..+.|...+. ..+.=++..-+|+|+| |+.
T Consensus 659 v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v~F~~~~g-~~~l~~l~~~~G~~lPfGa~ 737 (801)
T PRK15304 659 VWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKVDFSVLNQ-RRVMLNVKRADGSPLPKGVS 737 (801)
T ss_pred eEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEEEEEEEccc-eEEEEEEEccCCCcCCCcEE
Confidence 47999999999999985544 322 3567888888888899999888888877654 3456678888999987 554
Q ss_pred EEEeecccceeeeeeecCCCceEeecccCCceEEEE
Q 000982 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIK 1000 (1201)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~ 1000 (1201)
|. ++++ ........+|...|+||.|.....|+
T Consensus 738 V~--~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 738 IV--DEKG--NYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EE--CCCC--cEEEEEeCCCEEEEECCCCCceEEEE
Confidence 43 3322 24477889999999999987655544
No 155
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=41.53 E-value=46 Score=29.49 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=31.2
Q ss_pred EEeeCCCccee-eEEEEE-cCcccccccCCceeeeeeeec-ceeEEee
Q 000982 331 RVVDENDMGVE-GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 331 ~V~d~~G~pl~-Ga~V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
++.+++|+||+ ||.|.. +|+.+...+.+|..-|+++++ |+.+|..
T Consensus 2 ~l~~~~G~~lPfGA~v~~~~g~~~g~Vg~~G~vyl~~~~~~~~L~V~w 49 (68)
T PF13953_consen 2 TLRDADGKPLPFGASVSDEDGNNIGIVGQDGQVYLSGLPPKGTLTVKW 49 (68)
T ss_dssp EEEETTSEE--TT-EEEETTSSEEEEB-GCGEEEEEEE-TCEEEEEES
T ss_pred EEEcCCCCcCCCCcEEEcCCCCEEEEEcCCCEEEEECCCCCcEEEEEE
Confidence 35667888876 788877 677778999999999999984 6666664
No 156
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=41.51 E-value=31 Score=33.84 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=26.8
Q ss_pred eecCCcceeecccCCcceEEEEeecCCccccCCCceeeeeee
Q 000982 531 LTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSF 572 (1201)
Q Consensus 531 ~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~ 572 (1201)
+.+..-+++|++|+||+|.|.+.+. .+++.-|+...
T Consensus 38 ~~~~~~~~~f~~lp~G~YAi~v~hD------~N~NgklD~n~ 73 (112)
T PF09912_consen 38 AKGGTVTITFEDLPPGTYAIAVFHD------ENGNGKLDTNF 73 (112)
T ss_pred cCCCcEEEEECCCCCccEEEEEEEe------CCCCCcCCcCC
Confidence 3466789999999999999999864 13455555554
No 157
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=41.19 E-value=2.3e+02 Score=30.49 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=30.5
Q ss_pred cccccccCCCCeEEE--eCCCceeeeeeecCCCCCcceeecCccceEEe
Q 000982 433 PQVKQTDNNGNFCFE--VPPGEYRLSAMAATPESSSGILFLPPYADVVV 479 (1201)
Q Consensus 433 ~~~t~Td~~G~f~f~--L~PG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V 479 (1201)
.....||+.|.-.-+ |.||.|.+..++ .|| ...++.+.|
T Consensus 257 VTsVITnssG~~vTNgqLsaGtYtVTySA------sGY--~DVTqtlvV 297 (301)
T PF06488_consen 257 VTSVITNSSGNVVTNGQLSAGTYTVTYSA------SGY--ADVTQTLVV 297 (301)
T ss_pred eEEEEEcCCCcEeecCcccCceEEEEEec------ccc--ccccceEEE
Confidence 567789999998887 999999999987 674 444555554
No 158
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=41.11 E-value=99 Score=41.19 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=61.2
Q ss_pred eeeecCCcceeeceeccc-ceeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-eE
Q 000982 267 HAVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-Ga 343 (1201)
...||..|.-.+++|.|= .-+|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+||+ |+
T Consensus 709 ~~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~-~~F~~~~g~~~l~~l~~~dG~~lP~Ga 787 (853)
T PRK15248 709 GAVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIAR-VNFATISGKAVLISVKMPDGGIPPMGA 787 (853)
T ss_pred CCeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEE-EEEEEeeceEEEEEEEcCCCCcCCCce
Confidence 367999999999998862 222222101101011111111122222222221 13443 234455567788899885 77
Q ss_pred EEEE-cCcccccccCCceeeeeeeec-ceeEEee
Q 000982 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 344 ~V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
.|.. +|+.+.....+|..-+.++++ |+.+|+-
T Consensus 788 ~V~~~~g~~~g~Vg~~G~vyl~~~~~~~~l~V~w 821 (853)
T PRK15248 788 DVFNGEGTNIGMVGQSGQIYARIAHPSGSLLVRW 821 (853)
T ss_pred EEECCCCcEEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 7765 566678899999999999986 5666654
No 159
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.60 E-value=2.4e+02 Score=37.46 Aligned_cols=108 Identities=10% Similarity=0.119 Sum_probs=61.0
Q ss_pred eeeeecCCcceeeceecccce-eeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-e
Q 000982 266 CHAVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-G 342 (1201)
Q Consensus 266 ~~~~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-G 342 (1201)
....||..|.-.++.|.|=.+ +|...-..-+...++.-....+....+.+.+ ..|.. .+..+--++.+++|+||+ |
T Consensus 692 ~~~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~-~~F~t~~g~~~li~l~~~dG~~lPfG 770 (835)
T COG3188 692 TGVRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVL-ADFDTRIGYRALITLRRADGSPLPFG 770 (835)
T ss_pred CCcEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEE-EEEeeeceeEEEEEEECCCCCcCCCc
Confidence 368999999999988875322 2222100000011111112222222232222 12432 234455556677898886 8
Q ss_pred EEEEEcCc--ccccccCCceeeeeeeecce-eEEe
Q 000982 343 VKILVDGH--ERSITDRDGYYKLDQVTSNR-YTIE 374 (1201)
Q Consensus 343 a~V~l~G~--~~~~TDadG~y~~~~L~pG~-Y~I~ 374 (1201)
|.|+.++. .+...+.+|..-+++|+++. -.|+
T Consensus 771 a~v~~~~~~~~~g~Vg~~G~vyl~gl~~~~~L~V~ 805 (835)
T COG3188 771 AEVTDEGGGQNVGIVGDDGQVYLRGLPPKGRLLVR 805 (835)
T ss_pred eEEEECCCceEEEEEecCCeEEEecCCCCCeEEEE
Confidence 88888654 56799999999999998855 3344
No 160
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=40.56 E-value=39 Score=28.51 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=21.3
Q ss_pred ecCCCceEeecccCCceEEEEEEEe
Q 000982 980 TDTSGSYRLRGLHPDTTYVIKVVKK 1004 (1201)
Q Consensus 980 Td~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1201)
++.+-.|.|.+|.|+..|.|++++-
T Consensus 53 ~~~~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 53 TPSSTSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred cCCccEEEEeCcCCCCEEEEEEEEE
Confidence 3446789999999999999999864
No 161
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=40.27 E-value=2e+02 Score=38.18 Aligned_cols=104 Identities=12% Similarity=0.040 Sum_probs=77.5
Q ss_pred CccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-ce
Q 000982 890 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1201)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1201)
...||..|...+. |.|=+.- |-+ +..+.+++-+.+.|.-.+|.-..+.|...+. ..+.=+++..+|+|+| |+
T Consensus 665 ~~~Td~~G~alVP-l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~~~F~~~~g-~~~ll~l~~~~G~~lP~Ga 742 (797)
T PRK15213 665 SGPTDSKGNTVVP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYREFKALKV-LRYILRVKQKDGRFVPGGS 742 (797)
T ss_pred CcEECCCCeEEEe-CCCceeeeEEECccCCCCCEEecccEEEEEecCCcEEEEEEEEEee-eEEEEEEEccCCCcCCCCe
Confidence 4689999999998 8863332 333 3467888888888888999888898887755 4456678889999887 55
Q ss_pred eEEEeecccceeeeeeecCCCceEeecccCCceEEE
Q 000982 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVI 999 (1201)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v 999 (1201)
.|. +.++ ........+|...|+||.+.....|
T Consensus 743 ~v~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v 774 (797)
T PRK15213 743 WAR--NEQG--TPLGFVANNGVLLMNLLDAPGDISV 774 (797)
T ss_pred EEE--CCCC--cEEEEEcCCCEEEEEcCCCCCEEEE
Confidence 553 3322 2457899999999999998766665
No 162
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=40.03 E-value=34 Score=37.89 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=31.3
Q ss_pred CCCcceeEEEeccCCCeeeeeee--cCccceee---------eeecCcceeeecc
Q 000982 146 GGPSNVNVELLSHSGDLISSVIT--SSEGSYLF---------KNIIPGKYKLRAS 189 (1201)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~sttT--d~~G~f~F---------~~l~PG~Y~l~~~ 189 (1201)
.+...++|++++.+|+++++..- -+.|.+.| ..+++|.|++++.
T Consensus 123 ~~a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~ 177 (225)
T PRK06655 123 SAADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKAS 177 (225)
T ss_pred CCCcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEE
Confidence 46667999999999988765433 35677777 2377888887764
No 163
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=39.29 E-value=32 Score=31.55 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=27.8
Q ss_pred cceeEEEEEeccccccccccc--CCCceEE--EE-------eeecceEEEEEcC
Q 000982 51 YSHVTVELRTLDGLVKESTQC--APNGYYF--IP-------VYDKGSFVIKVNG 93 (1201)
Q Consensus 51 lsgv~V~L~~~~G~~~~~t~t--~~nG~y~--i~-------~l~~G~Y~l~~~~ 93 (1201)
.+.++|.++|.+|+++.+-.- .+.|.+. -+ .+++|.|++++.+
T Consensus 24 a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 24 ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 447899999999999877432 2356544 34 4578999988765
No 164
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=39.14 E-value=1.7e+02 Score=38.72 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=59.1
Q ss_pred eeeecCCcceeeceeccc-ceeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-eE
Q 000982 267 HAVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-Ga 343 (1201)
...||..|.-.++ |.|= .-+|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+||+ |+
T Consensus 665 ~~~Td~~G~alVP-l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~-~~F~~~~g~~~ll~l~~~~G~~lP~Ga 742 (797)
T PRK15213 665 SGPTDSKGNTVVP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVY-REFKALKVLRYILRVKQKDGRFVPGGS 742 (797)
T ss_pred CcEECCCCeEEEe-CCCceeeeEEECccCCCCCEEecccEEEEEecCCcEEE-EEEEEEeeeEEEEEEEccCCCcCCCCe
Confidence 5789999999998 8752 122222101101111111112222222222222 23443 233444567788999885 67
Q ss_pred EEEE-cCcccccccCCceeeeeeeec-ceeEE
Q 000982 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTI 373 (1201)
Q Consensus 344 ~V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I 373 (1201)
.|.- +|+.+...+.+|.--+.++++ |..+|
T Consensus 743 ~v~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v 774 (797)
T PRK15213 743 WARNEQGTPLGFVANNGVLLMNLLDAPGDISV 774 (797)
T ss_pred EEECCCCcEEEEEcCCCEEEEEcCCCCCEEEE
Confidence 6654 566668899999999999986 67777
No 165
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=38.82 E-value=1e+02 Score=29.14 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=48.2
Q ss_pred cCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCCceeEEEe-ecc-cceeeeeeecCCCceEeecccCCceE
Q 000982 920 FSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEAR-SES-KGYYEETVTDTSGSYRLRGLHPDTTY 997 (1201)
Q Consensus 920 ~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~-~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y 997 (1201)
+.|+...++.. +....|.|..-+..+...++-.++-.- .......+. ..+ ...........+-.+.|++|.||..|
T Consensus 3 lgPP~v~v~~~-~~~l~V~i~~P~~~~~~~~~~~~l~~~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 80 (106)
T PF09294_consen 3 LGPPSVNVSSC-GGSLHVTIKPPMTPLRAGGKNSSLRDI-YPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNY 80 (106)
T ss_dssp E-SSEEEEEEE-TTEEEEEEEESEEEEECSSSEEEHHHH-HGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEE
T ss_pred ecCCEEEEEEC-CCEEEEEEECCCcccccCCCCCcHHHh-CCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCE
Confidence 56777666433 446788888887666434444433211 113455554 333 22245556666777899999999999
Q ss_pred EEEEEE
Q 000982 998 VIKVVK 1003 (1201)
Q Consensus 998 ~v~~~~ 1003 (1201)
=|+|.+
T Consensus 81 Cv~V~~ 86 (106)
T PF09294_consen 81 CVSVQA 86 (106)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 166
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=38.01 E-value=1.3e+02 Score=34.94 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=45.3
Q ss_pred CceeEecCCCcceeEEEEEEEE--E--Eee----------eeeEEeecCCCCCceeEEEeecccceeeeeeecCCCceEe
Q 000982 923 PAQAIELGSGESREVIFQATRV--A--YSA----------TGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRL 988 (1201)
Q Consensus 923 ~~~~i~v~~G~~~~v~~~~~r~--~--~s~----------~G~V~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i 988 (1201)
.++..+++||+-..+.|.+... . |.+ .-.|.+=+|. |.|++.-.++...-+...-.-.+|+|
T Consensus 57 r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~~~~~~~l~v~~C~G~----V~v~i~r~gk~l~~~~~v~~~~~f~l 132 (300)
T PF10179_consen 57 RSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSSTHQSLWLFVQSCSGS----VRVEISRNGKILLSQKNVEGLRHFRL 132 (300)
T ss_pred CCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCCCCccEEEEEEeCCCe----EEEEEEECCeEEeeeecccceEEEEE
Confidence 3455667777666666665542 1 111 1112222333 55666655544444445555678999
Q ss_pred ecccCCceEEEEEE
Q 000982 989 RGLHPDTTYVIKVV 1002 (1201)
Q Consensus 989 ~gL~pg~~y~v~~~ 1002 (1201)
+|+.||..|.|++.
T Consensus 133 ~~~~~g~~Yliri~ 146 (300)
T PF10179_consen 133 SGVKPGERYLIRIQ 146 (300)
T ss_pred CCCCCCCeEEEEEE
Confidence 99999999999994
No 167
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=37.94 E-value=1.4e+02 Score=39.10 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=68.0
Q ss_pred ccccccEEEEEEecCCCCCCCceeEEEeec--CCCcccCccccCCceeeeccccCccccchhhhh------hcccCC---
Q 000982 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSG--DDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLK------EYAFSP--- 922 (1201)
Q Consensus 854 ~~~l~~i~v~v~~~~~~~~pL~~vl~slsg--~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~k------ey~~~p--- 922 (1201)
+.+++.+.|++.++++ .+....|.| +-.+|--+-.++ =+|--|+|=+=|-.+++. .|+.--
T Consensus 692 ~~~~AGviV~v~~~dd-----~~~~akv~g~~~~~~~~slg~G~---~~llPl~~Y~~~~vev~da~~s~~~~~~Vt~g~ 763 (895)
T PRK15310 692 GEPASGMAVNVESEGD-----EGSSGKVVSVRGSSQPFSLGFGQ---QSLLLMEGYNATEVTIEDAGVSSQGMAGVKAGG 763 (895)
T ss_pred CCCcceEEEEeccCCC-----ccceEEEecccccceeeeccCCc---eeeEecCCccceeEEEecCCccccceeeecccC
Confidence 4778889998877643 256667777 312222222222 223333331111112211 111100
Q ss_pred CceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCCceeEEEeecccceeeeeeecCCCceEee
Q 000982 923 PAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLR 989 (1201)
Q Consensus 923 ~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~ 989 (1201)
......+-.|.-...++.+ .+-|..+|++.+.+|.|+.++.+.= +.. ..||+||-|.+.
T Consensus 764 g~~~~fL~PGnl~~~~v~~-~~~~~yiGr~~~~~G~~l~~a~IlN------~~~-~~td~~GgF~~d 822 (895)
T PRK15310 764 GSRRYFLTPGHLLVHNISA-SMSRLYVGRVLDKDGRPLLDAQPLN------YPF-LSLGPSGRFSLQ 822 (895)
T ss_pred CccceEecCCceEEecccE-EEEEEEEEEEECCCCCCcccceeec------Ccc-ceecCCCCEEEE
Confidence 1111245556555566666 6778889999999999999987642 334 889999999876
No 168
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=37.56 E-value=76 Score=29.88 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=16.6
Q ss_pred cccCCceeeee-----eeecceeEEeeee
Q 000982 354 ITDRDGYYKLD-----QVTSNRYTIEAVK 377 (1201)
Q Consensus 354 ~TDadG~y~~~-----~L~pG~Y~I~~~~ 377 (1201)
.++.+|.|.++ +.+.|.|+|++..
T Consensus 57 ~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 57 TTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp ETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred eeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 56788887775 2346999999987
No 169
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=36.81 E-value=30 Score=32.88 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=27.6
Q ss_pred cccccceeEEEEEeccccccccccc--CCC-ceEE--EEe-eecceEEEE--EcCCCC
Q 000982 47 ARLDYSHVTVELRTLDGLVKESTQC--APN-GYYF--IPV-YDKGSFVIK--VNGPEG 96 (1201)
Q Consensus 47 ~~i~lsgv~V~L~~~~G~~~~~t~t--~~n-G~y~--i~~-l~~G~Y~l~--~~~P~G 96 (1201)
.++......|+|++++|+.+..... +.+ -.+. ++. |++|.|+|+ +...+|
T Consensus 28 e~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~DG 85 (97)
T PF04234_consen 28 EPVEPGFSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVSADG 85 (97)
T ss_dssp S---CCC-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEETTS
T ss_pred CCCccCccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEecCC
Confidence 3455557889999999977655422 222 2455 555 789999994 444443
No 170
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=36.72 E-value=74 Score=35.23 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=30.3
Q ss_pred eccceeeccccCCcEEEEEEeecccCCCCceeeEEEeecCCcceeecc-------cCCcceEEEEee
Q 000982 495 VLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRD-------VLPGKYRLEVKR 554 (1201)
Q Consensus 495 V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~-------L~PG~Y~v~~~~ 554 (1201)
+++.+.....+. .+.|++.+.+|. .+++..+....+.|.+++ +++|.|++++..
T Consensus 113 ~~~~~~l~~~a~-~v~v~I~D~~G~-----vV~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A 173 (223)
T PRK12813 113 VTISPNPAADAD-KAELVVRDAAGA-----EVARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVES 173 (223)
T ss_pred eEEEEeccCCCc-eEEEEEEcCCCC-----EEEEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEE
Confidence 344444433333 455666655543 344444434445566653 889999999975
No 171
>KOG3306 consensus Predicted membrane protein [Function unknown]
Probab=36.64 E-value=35 Score=35.59 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=32.1
Q ss_pred EEEEEc-Cccc--ccccCCceeeeeeeecceeEEeeeeeeeeeccc
Q 000982 343 VKILVD-GHER--SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 385 (1201)
Q Consensus 343 a~V~l~-G~~~--~~TDadG~y~~~~L~pG~Y~I~~~~~~y~~~~~ 385 (1201)
+.+.++ |... +.|| |.|..++.+.|+|.|++..+.+.++++
T Consensus 13 ~~liv~~~~f~gF~~td--~sf~~~d~ptgty~V~V~~s~vi~~p~ 56 (185)
T KOG3306|consen 13 ARLIVNGGEFVGFASTD--GSFGSEDSPTGTYRVEVPSSDVIGHPA 56 (185)
T ss_pred eeeEeccceEEEEEeec--cccccccCCceeEEEEecCcceeecce
Confidence 445553 4444 4677 999999999999999999999877775
No 172
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=36.55 E-value=1.6e+02 Score=39.51 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=60.2
Q ss_pred eeecCCcceeeceecccce-eeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-eEE
Q 000982 268 AVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 344 (1201)
Q Consensus 268 ~~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-Ga~ 344 (1201)
+.||..|.-.++.|.|=.. +|...-..-+...++.-....+....+.+.. ..|.+ .+..+-=++.+++|+|++ ||.
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~-~~F~~~~g~~~l~~l~~~dG~~lPfGa~ 761 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGY-RHFDVVSGEKMMAVFRLADGDFPPFGAE 761 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEE-EEEEEEeeeEEEEEEEccCCCcCCCceE
Confidence 7899999999998886321 2222101100111121122222222232222 23442 233333456677899885 777
Q ss_pred EEE-cCcccccccCCceeeeeeeec-ceeEEee
Q 000982 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 345 V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
|.. +|+.+...+.+|.--+.++++ |+.+|.-
T Consensus 762 V~~~~g~~~giVg~~G~vyl~g~~~~~~l~V~w 794 (881)
T PRK15273 762 VKNERQQQLGLVADDGNAWLAGVKAGETLKVFW 794 (881)
T ss_pred EEcCCCcEEEEEcCCCEEEEecCCCCceEEEEe
Confidence 765 566778999999999999987 5666643
No 173
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=36.36 E-value=44 Score=28.80 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=24.7
Q ss_pred CcceeEEEeccCCCeeeeeeecCccceeeeeecCcceee
Q 000982 148 PSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKL 186 (1201)
Q Consensus 148 laGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~PG~Y~l 186 (1201)
-+|-++ ++-.|..-.+.+||++|.-.|. ++|+.|.+
T Consensus 20 ~ag~~~--~D~tGn~~~~vtid~dG~~~f~-v~~~s~SV 55 (57)
T PF09154_consen 20 WAGKTF--YDYTGNSSETVTIDEDGWGEFP-VPPGSVSV 55 (57)
T ss_dssp GTTEEE--EETTSSSSSEEEE-TTSEEEEE-E-TTEEEE
T ss_pred cCCCEE--EEccCCCCCeEEECCCeEEEEE-ECCCEEEE
Confidence 344443 4445554567899999999999 99998876
No 174
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=34.80 E-value=35 Score=37.78 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=29.5
Q ss_pred cceeEEEEEecccccccccccC--CCceEEE---------EeeecceEEEEEcC
Q 000982 51 YSHVTVELRTLDGLVKESTQCA--PNGYYFI---------PVYDKGSFVIKVNG 93 (1201)
Q Consensus 51 lsgv~V~L~~~~G~~~~~t~t~--~nG~y~i---------~~l~~G~Y~l~~~~ 93 (1201)
-..++|+++|.+|+++.+..-. +.|.+.| ..+++|.|++++.+
T Consensus 125 a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A 178 (225)
T PRK06655 125 ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASA 178 (225)
T ss_pred CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEE
Confidence 3479999999999998765442 2565554 12467888776654
No 175
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=34.66 E-value=48 Score=31.48 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=16.7
Q ss_pred eeeee-ecCcceeeec---cCCCcEEEEeeeeEEEe
Q 000982 174 YLFKN-IIPGKYKLRA---SHPNLSVEVRGSTEVEL 205 (1201)
Q Consensus 174 f~F~~-l~PG~Y~l~~---~~~g~~~~~~~~~~V~v 205 (1201)
..+.. |+||.|+|.. +.+|... +++..|+|
T Consensus 63 ~~l~~~l~~G~YtV~wrvvs~DGH~~--~G~~~F~V 96 (97)
T PF04234_consen 63 VPLPPPLPPGTYTVSWRVVSADGHPV--SGSFSFTV 96 (97)
T ss_dssp EEESS---SEEEEEEEEEEETTSCEE--EEEEEEEE
T ss_pred EECCCCCCCceEEEEEEEEecCCCCc--CCEEEEEE
Confidence 34445 8889999974 4455543 35555554
No 176
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=33.93 E-value=1.8e+02 Score=38.71 Aligned_cols=107 Identities=7% Similarity=0.030 Sum_probs=59.8
Q ss_pred eeeeecCCcceeeceeccc---ceeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee
Q 000982 266 CHAVSDADGKFMFKSVPCG---QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE 341 (1201)
Q Consensus 266 ~~~~TD~~G~f~f~~LppG---~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~ 341 (1201)
..+.||..|.-.+++|.|= +..|.+..-+. ..++.-....+....+.+.+ ..|.+ .+..+-=++.+++|+||+
T Consensus 688 ~~~~Td~~G~AvvP~l~pY~~N~i~ID~~~LP~--dvel~~t~~~vvPt~GAiv~-~~F~~~~g~~~ll~l~~~~G~~lP 764 (826)
T PRK15217 688 KYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDS--ETELRGNRKIAAPYRGAVVL-VNFDTDQRKPWFIKALRADGQPLT 764 (826)
T ss_pred CCCeECCCCEEEeCCCCCceeceEEECCcCCCC--CEEecccEEEEEecCCcEEE-EEEEEecceEEEEEEEcCCCCcCC
Confidence 3578999999999998862 12222210011 11111112222222222222 12443 233344456778899886
Q ss_pred -eEEEEE-cCcccccccCCceeeeeeeec-ceeEEee
Q 000982 342 -GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 342 -Ga~V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
|+.|.- +|+.+.....+|.--+.++.+ |..+|..
T Consensus 765 ~Ga~V~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~w 801 (826)
T PRK15217 765 FGYEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVKVAI 801 (826)
T ss_pred CceEEECCCCcEEEEEcCCCeEEEEcCCCCceEEEEE
Confidence 676655 567778899999988887754 6666554
No 177
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=33.54 E-value=3.7e+02 Score=29.81 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=30.6
Q ss_pred cccCccccchhhhh---hcccC-C---CceeEecCCCcceeEEEEEEEEE
Q 000982 903 NLFPGNFYLRPLLK---EYAFS-P---PAQAIELGSGESREVIFQATRVA 945 (1201)
Q Consensus 903 ~L~PG~Y~~~~~~k---ey~~~-p---~~~~i~v~~G~~~~v~~~~~r~~ 945 (1201)
.|++|.|.+++..- .=.|+ | -++.|+|++|+++.+.|+.+..-
T Consensus 61 ~L~~G~Ytv~A~~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~v~C~laN 110 (235)
T PF14900_consen 61 ELPVGSYTVKASYGDNVAAGFDKPYYEGSTTFTIEKGETTTVSVTCKLAN 110 (235)
T ss_pred eecCCcEEEEEEcCCCccccccCceeecceeEEEecCCcEEEEEEEEeee
Confidence 58999999998721 11222 2 45689999999999888776553
No 178
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=31.96 E-value=3.2e+02 Score=36.41 Aligned_cols=108 Identities=15% Similarity=0.055 Sum_probs=78.1
Q ss_pred cCccccCCceeeeccccCcccc---chh--hhhhcccCCCceeEecCCCcceeEEEEEEEEEEeeeeeEEeecCCCCC-c
Q 000982 889 NNSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-G 962 (1201)
Q Consensus 889 ~n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-g 962 (1201)
.+..||..|...+.+|.|=+.- |-+ +..+-+++-+.+.|...+|.-..+.|...+.. .+.=++..-+|+|+| |
T Consensus 688 ~~~~Td~~G~AvvP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~-~~ll~l~~~~G~~lP~G 766 (826)
T PRK15217 688 KYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDSETELRGNRKIAAPYRGAVVLVNFDTDQRK-PWFIKALRADGQPLTFG 766 (826)
T ss_pred CCCeECCCCEEEeCCCCCceeceEEECCcCCCCCEEecccEEEEEecCCcEEEEEEEEecce-EEEEEEEcCCCCcCCCc
Confidence 4468999999999999883332 333 34577777788888889998888888776653 456678888999987 5
Q ss_pred eeEEEeecccceeeeeeecCCCceEeecccCCceEEEEE
Q 000982 963 VSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1201)
Q Consensus 963 v~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1201)
+.|. ++++ .+......+|...|+||.+.....|+.
T Consensus 767 a~V~--~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~w 801 (826)
T PRK15217 767 YEVN--DIHG--HNIGVVGQGSQLFIRTNEVPPSVKVAI 801 (826)
T ss_pred eEEE--CCCC--cEEEEEcCCCeEEEEcCCCCceEEEEE
Confidence 5554 3322 255789999999999998766544443
No 179
>PF13115 YtkA: YtkA-like
Probab=31.93 E-value=66 Score=29.50 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=27.0
Q ss_pred eeCCCcceeeEEEEE-----c--Cccc-----c-cccCCceeeeeee--ecceeEEee
Q 000982 333 VDENDMGVEGVKILV-----D--GHER-----S-ITDRDGYYKLDQV--TSNRYTIEA 375 (1201)
Q Consensus 333 ~d~~G~pl~Ga~V~l-----~--G~~~-----~-~TDadG~y~~~~L--~pG~Y~I~~ 375 (1201)
.+.+|+||.+|.|.+ + |... . .....|.|...-. .+|.|.|++
T Consensus 28 ~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m~G~W~i~v 85 (86)
T PF13115_consen 28 VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSMAGTWQITV 85 (86)
T ss_pred ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCCCeeEEEEE
Confidence 556899999999988 2 2211 1 2246777777522 357777664
No 180
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=31.92 E-value=2.2e+02 Score=34.06 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=35.7
Q ss_pred cccCccccchh----------hhhhcccCCCceeEecCCCc----ceeEEEEEEEE-----EEeeeeeEEeecCC
Q 000982 903 NLFPGNFYLRP----------LLKEYAFSPPAQAIELGSGE----SREVIFQATRV-----AYSATGTITLLSGQ 958 (1201)
Q Consensus 903 ~L~PG~Y~~~~----------~~key~~~p~~~~i~v~~G~----~~~v~~~~~r~-----~~s~~G~V~~~~g~ 958 (1201)
+.+||.|.++- .-.++.+.|.|..+++...+ ...+.|++... +-.+.+++...+|.
T Consensus 180 ~~~~G~Y~~~v~~~n~vF~R~~~q~v~V~p~Pi~~~~~~~~~~~~~h~l~v~~d~~~i~~~s~~~~~~~~~P~g~ 254 (374)
T TIGR03503 180 DVAPGEYRPTYQSRNPVFLREVEQPVLVYPLPVSYTVIQSEDESGAHQLMVDADAGHIDPGSLVIHGELVFPNGQ 254 (374)
T ss_pred cCCCceEEEEEEEcCceEEEEEEEeEEEECCCeeEEEEccCCCCCceEEEEEcccceeccccEEEEEEEECCCCc
Confidence 55677776553 23345566888887776543 35677776643 34577888887775
No 181
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=31.72 E-value=2e+02 Score=38.31 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=60.1
Q ss_pred eeeecCCcceeeceecccc-eeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEEe-eeeeeeEEeeCCCccee-eE
Q 000982 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 343 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sv~G~V~d~~G~pl~-Ga 343 (1201)
.+.||..|.-.++.|.|=. -+|......-+...++.-....+....+.+.+ ..|.+. +..+-=++.+++|+|++ |+
T Consensus 700 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~-~~F~~~~g~~~l~~l~~~~G~~lPfGa 778 (845)
T PRK15294 700 GVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVR-AEYKTNIGYKALMVLTRINNLPVPFGA 778 (845)
T ss_pred CCEECCCCeEEeCCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEE-EEEEEeeeeEEEEEEECCCCCcCCceE
Confidence 3699999999999987621 12222101101111111111222222222222 124332 22333345677899885 88
Q ss_pred EEEE-c--CcccccccCCceeeeeeeec-ceeEEee
Q 000982 344 KILV-D--GHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 344 ~V~l-~--G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
.|.+ + |+.+.....+|.--+.+|++ |+.+|.-
T Consensus 779 ~V~~~~~~g~~~g~Vg~~G~vyl~gl~~~~~L~v~w 814 (845)
T PRK15294 779 TVSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKW 814 (845)
T ss_pred EEEccCCCCceEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 8876 3 56678999999999999986 6777754
No 182
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=31.68 E-value=53 Score=32.33 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=30.6
Q ss_pred cCCcceeecccCCcceEEEEeecCCccccCCCceeeeeeeeeeeeccCc
Q 000982 533 DDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTND 581 (1201)
Q Consensus 533 d~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~~~v~V~~~~ 581 (1201)
-.+|.|...+|+||+|+|+... .-.+-|....+++++.+.+
T Consensus 55 l~~g~y~~~~v~pG~h~i~~~~--------~~~~~~~~~~l~~~~~~G~ 95 (117)
T PF11008_consen 55 LKNGGYFYVEVPPGKHTISAKS--------EFSSSPGANSLDVTVEAGK 95 (117)
T ss_pred eCCCeEEEEEECCCcEEEEEec--------CccCCCCccEEEEEEcCCC
Confidence 4789999999999999999963 1123335667778877665
No 183
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=31.39 E-value=1.1e+03 Score=32.48 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=62.3
Q ss_pred eeeeecCCCceEeecccCCceEEEEEEEecCCCcccccccCCceEEEEeccCcc-----ccceEEEeeccceeEEEEEee
Q 000982 976 EETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDI-----KGLDFLVFEQPEKTILSGHVE 1050 (1201)
Q Consensus 976 ~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~~~~~~P~~~~v~~~~~d~-----~~~~f~~~~~~~~~~i~g~V~ 1050 (1201)
+.......=.|.|+||.|-+.|.|++.+.. +..+-++++.-.++. -+|+ .+|...+..... |.++=.
T Consensus 566 ~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N---~~G~g~sS~~i~V~T--lsd~PsaPP~Nl~lev~sSts---VrVsW~ 637 (1381)
T KOG4221|consen 566 ELRVENNATEYTINGLEKYTEYSIRVVAYN---SAGSGVSSADITVRT--LSDVPSAPPQNLSLEVVSSTS---VRVSWL 637 (1381)
T ss_pred eEEEecCccEEEeecCCCccceEEEEEEec---CCCCCCCCCceEEEe--ccCCCCCCCcceEEEecCCCe---EEEEcc
Confidence 445556666799999999999999999874 333444544444443 2232 223333222211 111111
Q ss_pred ccc--hh-ccccceEEEEeccCCccceeEEEeeccccceeecCCCCc-ceeeEecc
Q 000982 1051 GNR--IK-ELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRS 1102 (1201)
Q Consensus 1051 ~~~--~~-~~~~~l~v~l~~~~~~~~~~~~~~~~~~~~f~~~~l~~~-~y~v~~~s 1102 (1201)
... .. -..-.+++.-++..+...+..++.-....++-|..|-++ .|.+++.-
T Consensus 638 pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa 693 (1381)
T KOG4221|consen 638 PPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISA 693 (1381)
T ss_pred CCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEE
Confidence 110 00 011233344444445555545333334455667778887 68888764
No 184
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=31.37 E-value=2.4e+02 Score=28.16 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=33.0
Q ss_pred CccccCCceeeeccccCcc-ccchhhhhhcccCCCceeEecCCCcceeEEEEEEEE
Q 000982 890 NSVSWAGGSFHFDNLFPGN-FYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRV 944 (1201)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~-Y~~~~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~ 944 (1201)
+..|+.+|.|.+..=.+.. -.+..-+.++.-.|.. |+|..++++.|.|+-+--
T Consensus 51 ~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~--Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 51 TATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKE--VTLPPNESKTVTFTIKMP 104 (121)
T ss_pred eeEecCCEEEEECCCCcccCcccCcchHHhccCCcE--EEECCCCEEEEEEEEEcC
Confidence 4689999999986444433 2233223333322333 999999998887776543
No 185
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=31.21 E-value=76 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=28.8
Q ss_pred eeEEEEEecccccccccccCC--Cc---eEEEEeeecceEEEEEcC
Q 000982 53 HVTVELRTLDGLVKESTQCAP--NG---YYFIPVYDKGSFVIKVNG 93 (1201)
Q Consensus 53 gv~V~L~~~~G~~~~~t~t~~--nG---~y~i~~l~~G~Y~l~~~~ 93 (1201)
++.+.|++.+|.......+.+ .| ...+....+|+|.|++.+
T Consensus 25 d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V~~ 70 (70)
T PF04151_consen 25 DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRVYG 70 (70)
T ss_dssp SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEEE-
T ss_pred CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEEEC
Confidence 455889999987666655544 23 344677799999998853
No 186
>PRK15316 RatA-like protein; Provisional
Probab=30.97 E-value=84 Score=43.94 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=34.1
Q ss_pred ccEEEEEEecCCCCCCCceeEEEeecCCCc-ccC----------------------------ccccCCceeeec
Q 000982 858 SQISVRIYSKDDAGEPIPSVLLSLSGDDGY-RNN----------------------------SVSWAGGSFHFD 902 (1201)
Q Consensus 858 ~~i~v~v~~~~~~~~pL~~vl~slsg~~~~-r~n----------------------------~~T~~~G~~~f~ 902 (1201)
=+|-++|.-.|..|+|.+++-|+|..+.+| |.| .+|++||+++|.
T Consensus 1595 E~ipi~VtttdA~Gnpv~ntpf~LkR~~s~~R~~~~~~~~~v~vt~~aGaa~~~~~~ss~lYGvTGaDGtltfT 1668 (2683)
T PRK15316 1595 EDAVIRVVTKNAQGNSVPNVPFILRREGSKNRQNAEMINKSITVINAAGASARMNSSSSLLYGVTGADGTTSFT 1668 (2683)
T ss_pred CceeEEEEeeccCCCccCCCceEEeecccccccccccccceeeeeccccceeeccccceeEEeeecCCceEEEE
Confidence 344455554455599999999999999776 656 358999999984
No 187
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=30.60 E-value=64 Score=42.27 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=59.5
Q ss_pred ccEEEEEEecCCCCCCCceeEEEeecCCCcccCccccCCceeeeccccCccccchhh---hhhcccCCCceeEecCCCcc
Q 000982 858 SQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPL---LKEYAFSPPAQAIELGSGES 934 (1201)
Q Consensus 858 ~~i~v~v~~~~~~~~pL~~vl~slsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~---~key~~~p~~~~i~v~~G~~ 934 (1201)
+.+.++..-++ -+-|-|..++|-.+...-...+...++...|.+|+||-|.|++- .+-|+ +....+-|++++.
T Consensus 445 ~~~tl~~~idd--~~qi~G~~~~l~dg~~~v~~~~i~~~~~~~~~~v~~GvYtl~~p~G~~~rY~--~~~~YlvV~~~~~ 520 (775)
T PF03272_consen 445 GNVTLTFNIDD--PSQIYGETYSLYDGNKVVYESTITDSTTQLFNDVPPGVYTLRHPRGRNKRYR--PDTNYLVVKETEN 520 (775)
T ss_pred ccEEEEEEcCC--hHHhcCceEEEEcCCeeEEEEEEcCCCceeccCCCCeeEEEEccCCCccccc--cCccEEEEeCCCc
Confidence 77777765543 46688999998888655556677778999999999999999854 34566 5588899998864
Q ss_pred eeEEEEEEEE
Q 000982 935 REVIFQATRV 944 (1201)
Q Consensus 935 ~~v~~~~~r~ 944 (1201)
+++++=+|-
T Consensus 521 -~~~l~yt~~ 529 (775)
T PF03272_consen 521 -NVTLNYTPL 529 (775)
T ss_pred -eEEEEeccc
Confidence 344443333
No 188
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.01 E-value=2.3e+02 Score=33.41 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=72.2
Q ss_pred cccEEEEEEecCCCCCCCceeEEEeecCCC-cccCccccCCceeeecc-ccCccccchhhhhhcccCCCceeEecCCCcc
Q 000982 857 LSQISVRIYSKDDAGEPIPSVLLSLSGDDG-YRNNSVSWAGGSFHFDN-LFPGNFYLRPLLKEYAFSPPAQAIELGSGES 934 (1201)
Q Consensus 857 l~~i~v~v~~~~~~~~pL~~vl~slsg~~~-~r~n~~T~~~G~~~f~~-L~PG~Y~~~~~~key~~~p~~~~i~v~~G~~ 934 (1201)
.+.|++++-.....+..+.++.++....+. ++.+..+ ..|++.++- ..-+++.+.-++++.- -+=.-.++.++|-+
T Consensus 288 ~~ri~~tvg~~~~~gK~ie~itVt~~~pn~i~~~~k~~-~~g~~~~~~~~k~l~W~~~~i~tg~l-p~Lkg~~~~e~~~s 365 (418)
T KOG2740|consen 288 QGRISLTVGPKKKMGKTIELITVTVQDPNEIAYASKIL-THGTFTNSIIMKQLTWTFGSIATGKL-PVLKGTINLEPGFS 365 (418)
T ss_pred eEEEEEeccccccccceeEeEEEEecCccceeeeeccc-ccceeEeecccceeEEEeecccCCcc-cccccccccCCCCC
Confidence 577777776555557888888777665532 4555444 566666643 2333333322222211 12233466777777
Q ss_pred eeEEEEEEEEEEeeeeeEEeecCCCCCceeEEEeecc----cceeeeeeecCCCceEee
Q 000982 935 REVIFQATRVAYSATGTITLLSGQPKDGVSVEARSES----KGYYEETVTDTSGSYRLR 989 (1201)
Q Consensus 935 ~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~~----~~~~~~~~Td~~G~~~i~ 989 (1201)
....+.--.-.|++. |..+.|..||..++- +.+.+--.+-.-|+|.+|
T Consensus 366 k~~~l~t~~Lqykiq-------g~alsglkVe~Ldm~~~~~k~yKGvKy~t~agnfqvR 417 (418)
T KOG2740|consen 366 KKVDLPTLSLQYKIQ-------GQALSGLKVERLDMYGEPYKPYKGVKYKTKAGNFQVR 417 (418)
T ss_pred ccccCcccceeeeee-------eeeccceEEEeeeecCCCCccccceEEEEeeeeEEEe
Confidence 666666666667554 567889999998873 334444445556777665
No 189
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=29.86 E-value=81 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.488 Sum_probs=15.5
Q ss_pred cCCceeeeccccCccccch
Q 000982 894 WAGGSFHFDNLFPGNFYLR 912 (1201)
Q Consensus 894 ~~~G~~~f~~L~PG~Y~~~ 912 (1201)
+.+-.+.|..+.||+||++
T Consensus 49 ~~~~~i~~~~~~~GtYyi~ 67 (70)
T PF04151_consen 49 GNDESITFTAPAAGTYYIR 67 (70)
T ss_dssp TSEEEEEEEESSSEEEEEE
T ss_pred CCccEEEEEcCCCEEEEEE
Confidence 3446688889999999986
No 190
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=29.37 E-value=65 Score=35.57 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=27.1
Q ss_pred cceeEEEEEeccccccccccc--CCCceEEEE--e----eecceEEEEEcC
Q 000982 51 YSHVTVELRTLDGLVKESTQC--APNGYYFIP--V----YDKGSFVIKVNG 93 (1201)
Q Consensus 51 lsgv~V~L~~~~G~~~~~t~t--~~nG~y~i~--~----l~~G~Y~l~~~~ 93 (1201)
.+.++|.++|.+|++ .+... .+.|.+.|. . +++|.|++++.+
T Consensus 122 a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a 171 (218)
T PRK09619 122 APTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVS 171 (218)
T ss_pred CcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEE
Confidence 447999999999997 44332 124654443 2 567777776653
No 191
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=29.29 E-value=93 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.614 Sum_probs=21.9
Q ss_pred cccccCCCCeEEE---eCCCceeeeeeecCC
Q 000982 435 VKQTDNNGNFCFE---VPPGEYRLSAMAATP 462 (1201)
Q Consensus 435 ~t~Td~~G~f~f~---L~PG~Y~v~~~~~~~ 462 (1201)
.++.|++|.|++. +..|.|.|++...+.
T Consensus 5 ~~t~~~~G~Ws~t~~~~~dG~y~itv~a~D~ 35 (54)
T PF13754_consen 5 TTTVDSDGNWSFTVPALADGTYTITVTATDA 35 (54)
T ss_pred EEEECCCCcEEEeCCCCCCccEEEEEEEEeC
Confidence 3456899999997 566999999988653
No 192
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=29.25 E-value=69 Score=35.67 Aligned_cols=44 Identities=25% Similarity=0.479 Sum_probs=28.7
Q ss_pred CCCcceeEEEeccCCCeeeeee--ecCccceeee---------eecCcceeeecc
Q 000982 146 GGPSNVNVELLSHSGDLISSVI--TSSEGSYLFK---------NIIPGKYKLRAS 189 (1201)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~stt--Td~~G~f~F~---------~l~PG~Y~l~~~ 189 (1201)
.+...++|.+++.+|+++++.. .-..|.+.|. .+++|.|++.+.
T Consensus 126 ~~a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~ 180 (230)
T PRK12633 126 GDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVS 180 (230)
T ss_pred CcCcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEE
Confidence 4556788888888888776542 2345655554 256777777664
No 193
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=28.89 E-value=1.4e+03 Score=29.65 Aligned_cols=198 Identities=18% Similarity=0.223 Sum_probs=97.2
Q ss_pred cCccccccc--CCceeeeeeeecceeEEeeeeee-e---eecccee--eEeecCCcc-ccccce--eeeeeeeeEEEec-
Q 000982 348 DGHERSITD--RDGYYKLDQVTSNRYTIEAVKVH-Y---KFNKLKE--YMVLPNMAS-IADIKA--ISYDICGVVRTVG- 415 (1201)
Q Consensus 348 ~G~~~~~TD--adG~y~~~~L~pG~Y~I~~~~~~-y---~~~~~~~--v~v~p~~~~-i~dI~~--~~~~v~G~V~~~~- 415 (1201)
||+.+..|| .+=+|.|.--.+|.|+|++.+-+ | .|+.... +.+..-.+. +..+.. ...-++|......
T Consensus 425 ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~ 504 (667)
T PRK14081 425 DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEV 504 (667)
T ss_pred CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEE
Confidence 888776554 56689998889999999876422 2 1222212 222221222 222222 2334566543211
Q ss_pred ---CCceeEEEec-cCCCCCCcccccccCCCCeEEE-eCCCceeeeeeecCCCCCcceeecCccceEEee--Cccccchh
Q 000982 416 ---SGNKVKVALT-HGPDKVKPQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVK--SPLLNIEF 488 (1201)
Q Consensus 416 ---~~~~a~VtL~-~~~~~~~~~~t~Td~~G~f~f~-L~PG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V~--~p~~~I~f 488 (1201)
+..+.-.... ..++.. ...+-=-....|+|. .-+|.|+|.+.+.+-.+..++- ..+++.+.|. .|+++...
T Consensus 505 ~~~~~k~v~y~y~~~~NG~~-v~~t~Ys~~~~ysf~P~~~GkY~I~V~aKn~~s~~~~D-~~k~v~~~V~e~~pi~nt~~ 582 (667)
T PRK14081 505 IIQNTKDVLIKYILKINGHK-VEETDYIKNKKYKFIPKCSGKYTIEVLAKNIKSTEEYD-SKKEVKFYVREALPITNTKI 582 (667)
T ss_pred EEeCCCeEEEEEEEEECCEE-EEEeeccccceEEEeecCCceEEEEEEEcccccccccc-cceEEEEEEcCCCCceeeEE
Confidence 1122211111 112211 111122356789999 9999999999885443333321 1334556663 46655443
Q ss_pred hhheeeeccceeeccccCCcEEEEEEeecccC-------CCCceeeEEEeecCCcceeecccCCcceEEEEeec
Q 000982 489 SQALVNVLGNVACKERCGPLVTVTLMRLGQKH-------YDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRT 555 (1201)
Q Consensus 489 ~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~-------~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ 555 (1201)
.-.++ .+. |...++++....+|.. +.+++-.-++-=....-|+|.--..|.|+|-+-.-
T Consensus 583 ~~~~~----~~~----~n~~~t~~~~~~gg~~v~Yef~v~~~g~w~~vq~ys~k~~ysf~p~~~g~Y~ilvl~k 648 (667)
T PRK14081 583 KTSKK----KFK----CNEEVTFSVKSEGGKDVCYEFYIMEKGEWKLVQKYSRKNYYSFMPFNKGKYKVLVLCK 648 (667)
T ss_pred Eeecc----eEE----cCCeEEEEEEccCCCcEEEEEEEEECCcEEEEeeccccCceEEEeccCCcEEEEEEEe
Confidence 32111 111 3223344433332221 01111111111145678999999999999988643
No 194
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=28.80 E-value=73 Score=36.72 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=29.4
Q ss_pred CcceeEEEeccCCCeeeeeeec----Cccceeee---------eecCcceeeecc
Q 000982 148 PSNVNVELLSHSGDLISSVITS----SEGSYLFK---------NIIPGKYKLRAS 189 (1201)
Q Consensus 148 laGv~V~L~~~~g~~i~sttTd----~~G~f~F~---------~l~PG~Y~l~~~ 189 (1201)
...|+|.+++.+|+++++..-+ ..|.+.|. .+++|.|++++.
T Consensus 165 a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~ 219 (295)
T PRK05842 165 KGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAE 219 (295)
T ss_pred CceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEE
Confidence 3468899999989887765433 34765554 377888988764
No 195
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=28.18 E-value=63 Score=35.76 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=28.6
Q ss_pred cceeEEEEEeccccccccccc--CCCceEE--EEe-------eecceEEEEEcC
Q 000982 51 YSHVTVELRTLDGLVKESTQC--APNGYYF--IPV-------YDKGSFVIKVNG 93 (1201)
Q Consensus 51 lsgv~V~L~~~~G~~~~~t~t--~~nG~y~--i~~-------l~~G~Y~l~~~~ 93 (1201)
-..++|.++|.+|+++++..- .+.|.+. .+. +++|.|++++.+
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 357999999999999877543 2246544 333 456777776654
No 196
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=27.38 E-value=3.4e+02 Score=25.35 Aligned_cols=49 Identities=35% Similarity=0.590 Sum_probs=33.2
Q ss_pred eeEEeeeEeeeecCccccccCCCCcceeEEEeccCC--CeeeeeeecCccceeeeeec--Ccceee
Q 000982 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG--DLISSVITSSEGSYLFKNII--PGKYKL 186 (1201)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g--~~i~sttTd~~G~f~F~~l~--PG~Y~l 186 (1201)
.|.|+|++... ..|..|.|....+ ..+.++..+ +|+|.|..-. |+.|.|
T Consensus 12 ~~~I~G~i~~~------------~~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~~p~~~~l 64 (106)
T PF14289_consen 12 QFTIEGKIKGL------------PDGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLDEPGFYYL 64 (106)
T ss_pred cEEEEEEEcCC------------CCCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCCCCEEEEE
Confidence 56788877531 3557777775543 345566666 9999999664 567888
No 197
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.21 E-value=1.3e+02 Score=32.46 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCcceeEEEeccCCC--eeeeeeecCccceeeeeecCcceeeecc--CCCcEEEEeeeeEEEeeccC
Q 000982 147 GPSNVNVELLSHSGD--LISSVITSSEGSYLFKNIIPGKYKLRAS--HPNLSVEVRGSTEVELGFEN 209 (1201)
Q Consensus 147 plaGv~V~L~~~~g~--~i~sttTd~~G~f~F~~l~PG~Y~l~~~--~~g~~~~~~~~~~V~v~~~~ 209 (1201)
|=-|+.|++.+.-++ ++-+-.=.++|.|+|+...||.|+|-.. ..+|....+-.+.+++..|+
T Consensus 63 p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~ 129 (215)
T KOG1690|consen 63 PNIGMHVEVKETFDNNHVVLSQQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGD 129 (215)
T ss_pred CCceEEEEeecCCCCceEEEeecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCc
Confidence 334455555443332 4555556689999999999999999753 34675432222344444343
No 198
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=27.12 E-value=2.5e+02 Score=37.61 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=61.0
Q ss_pred eeecCCcceeeceecccc---eeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-e
Q 000982 268 AVSDADGKFMFKSVPCGQ---YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-G 342 (1201)
Q Consensus 268 ~~TD~~G~f~f~~LppG~---Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-G 342 (1201)
..||..|.-.++.|.|=. +.|.+. .-+...++.-....+....+.+.+ ..|.+ .+..+-=++.+++|+||+ |
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~--~LP~dvel~~t~~~vvPt~GAvv~-~~F~~~~g~~~ll~l~~~~G~~lP~G 794 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDIN--TLENDVELKSTSAVAVPRQGAVVL-ADFETDQGRSAIMNITRSDGKNIPFA 794 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCc--CCCCCeEecccEEEEEecCCcEEE-EEEEeecceEEEEEEECCCCCcCCCc
Confidence 478999999999988642 222221 101111122222222222232222 13443 233344456778999885 7
Q ss_pred EEEEE-cCcccccccCCceeeeeeeec-ceeEEee
Q 000982 343 VKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 343 a~V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
+.|.. +|+.+...+.+|.--++++++ |+.+|+-
T Consensus 795 a~V~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~w 829 (865)
T PRK09828 795 ADVYDEQGNVIGNVGQGGQAFVRGIEDQGELRIRW 829 (865)
T ss_pred eEEECCCCcEEEEEeCCCEEEEEcCCCCceEEEEE
Confidence 77764 566667899999999999987 5666655
No 199
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=26.93 E-value=3.2e+02 Score=36.49 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=59.0
Q ss_pred eeeecCCcceeeceecccc-eeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-eE
Q 000982 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-Ga 343 (1201)
...||..|.-.+++|.|=. -+|......-+...++.-....+....+.+.. ..|.+ .+..+-=++.+++|+||+ ||
T Consensus 706 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~-~~F~~~~g~~~ll~l~~~~G~~lP~Ga 784 (848)
T PRK15298 706 GVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVR-AAYDTHKGYRVLLTLTRSNGEPVPFGA 784 (848)
T ss_pred CCEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEE-EEEEEEeeEEEEEEEECCCCCcCCCCc
Confidence 4799999999999988632 22222101100011111111122222222221 13443 223333456778899885 78
Q ss_pred EEEEcCc---ccccccCCceeeeeeeec-ceeEEee
Q 000982 344 KILVDGH---ERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 344 ~V~l~G~---~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
.|.++++ .+...+.+|.--|.++++ +...++.
T Consensus 785 ~v~~~~~~~~~~g~Vg~~G~vyl~g~~~~~~l~v~w 820 (848)
T PRK15298 785 TASVDGQDANLASIVGDKGQVFLSGLPEEGLLLVNW 820 (848)
T ss_pred EEEEcCCCCeeEEEECCCCEEEEEecCCCceEEEEE
Confidence 8877432 347899999999999986 4565554
No 200
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=26.70 E-value=61 Score=29.55 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=30.0
Q ss_pred eeEEEEEcCcccccccCCceeeeeeeecce---eEEeee
Q 000982 341 EGVKILVDGHERSITDRDGYYKLDQVTSNR---YTIEAV 376 (1201)
Q Consensus 341 ~Ga~V~l~G~~~~~TDadG~y~~~~L~pG~---Y~I~~~ 376 (1201)
++|++.++|+...-++..=.|.=.+|++|. |+|++.
T Consensus 11 adAkl~v~G~~t~~~G~~R~F~T~~L~~G~~y~Y~v~a~ 49 (75)
T TIGR03000 11 ADAKLKVDGKETNGTGTVRTFTTPPLEAGKEYEYTVTAE 49 (75)
T ss_pred CCCEEEECCeEcccCccEEEEECCCCCCCCEEEEEEEEE
Confidence 789999999988778888889999999995 556554
No 201
>PRK10301 hypothetical protein; Provisional
Probab=26.48 E-value=96 Score=31.07 Aligned_cols=49 Identities=8% Similarity=0.193 Sum_probs=29.3
Q ss_pred ccccceeEEEEEecccccccccc--cC-CCce-EEEEe---eecceEEEE--EcCCCC
Q 000982 48 RLDYSHVTVELRTLDGLVKESTQ--CA-PNGY-YFIPV---YDKGSFVIK--VNGPEG 96 (1201)
Q Consensus 48 ~i~lsgv~V~L~~~~G~~~~~t~--t~-~nG~-y~i~~---l~~G~Y~l~--~~~P~G 96 (1201)
++......|+|.+.+|..+.... .+ .++. +.+++ |.+|+|+|+ +...+|
T Consensus 55 ~v~~~~s~i~v~~~~g~~v~~~~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~DG 112 (124)
T PRK10301 55 GIEPGFSGATITGPKQENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDG 112 (124)
T ss_pred CccccccEEEEEcCCCCEeccCCccccCCCCcEEEEECCCCCCCccEEEEEEEEecCC
Confidence 33333456888888887654432 22 2453 55654 789999994 444444
No 202
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=26.34 E-value=3e+02 Score=36.59 Aligned_cols=108 Identities=11% Similarity=0.086 Sum_probs=59.8
Q ss_pred eeeecCCcceeeceecccc-eeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEE-eeeeeeeEEeeCCCccee-eE
Q 000982 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sv~G~V~d~~G~pl~-Ga 343 (1201)
...||..|.-.+++|.|=. -+|......=+...++.-....+....+.+.+ ..|.+ .+..+-=++.+++|+||+ |+
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~-~~F~~~~g~~~ll~l~~~~G~~lPfGa 746 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVK-AVYKTSVGTNALIRITRTNGKPLALGT 746 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEE-EEEEEeeeeEEEEEEECCCCCcCCCce
Confidence 4789999999999998642 12222101100011111112222222232222 13443 233344456778899886 77
Q ss_pred EEEE-c--C--cccccccCCceeeeeeeec-ceeEEee
Q 000982 344 KILV-D--G--HERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 344 ~V~l-~--G--~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
.|.+ + | +.+...+.+|.--|.+|++ |+.+|+-
T Consensus 747 ~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~w 784 (814)
T PRK15235 747 VLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASW 784 (814)
T ss_pred EEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEEE
Confidence 7776 3 2 2357899999999999987 5666654
No 203
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=25.95 E-value=74 Score=35.41 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=28.3
Q ss_pred cceeEEEEEeccccccccccc--CCCceEEEE--e-------eecceEEEEEcC
Q 000982 51 YSHVTVELRTLDGLVKESTQC--APNGYYFIP--V-------YDKGSFVIKVNG 93 (1201)
Q Consensus 51 lsgv~V~L~~~~G~~~~~t~t--~~nG~y~i~--~-------l~~G~Y~l~~~~ 93 (1201)
-..++|.++|.+|+++++..- .+.|.+.|. . +++|.|++++.+
T Consensus 128 a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 128 ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 347999999999999887543 235644433 2 356777766654
No 204
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=25.51 E-value=5e+02 Score=27.12 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=23.4
Q ss_pred ecCCCceEee------cccCCceEEEEEEEecCCCcc
Q 000982 980 TDTSGSYRLR------GLHPDTTYVIKVVKKDGFGST 1010 (1201)
Q Consensus 980 Td~~G~~~i~------gL~pg~~y~v~~~~~~~~~~~ 1010 (1201)
...+|.|++. .|.+|..|++++.+.|..|+.
T Consensus 102 ~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 102 NKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred eccCceEEeecccccCCcCCCCeEEEEEEEEecCCCE
Confidence 3357788774 778899999999987765433
No 205
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=25.05 E-value=1.8e+02 Score=27.00 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=31.4
Q ss_pred CCcceeEEEeccCCCeeeeeeecCccceeeeeec-----CcceeeeccCCCcEEE
Q 000982 147 GPSNVNVELLSHSGDLISSVITSSEGSYLFKNII-----PGKYKLRASHPNLSVE 196 (1201)
Q Consensus 147 plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~-----PG~Y~l~~~~~g~~~~ 196 (1201)
..+|+.|.|. .+|.......++ +|.+.+. ++ +|.|+|.+.+-.|...
T Consensus 24 ~~~gs~ValS-~dg~l~G~ai~~-sG~ati~-l~~~it~~~~~tlTit~~n~~t~ 75 (81)
T PF03785_consen 24 DVPGSYVALS-QDGDLYGKAIVN-SGNATIN-LTNPITDEGTLTLTITAFNYVTY 75 (81)
T ss_dssp SSTT-EEEEE-ETTEEEEEEE-B-TTEEEEE--SS--TT-SEEEEEEE-TTB--E
T ss_pred cCCCcEEEEe-cCCEEEEEEEec-CceEEEE-CCcccCCCceEEEEEEEEccEEE
Confidence 3467788875 457778899999 9999887 65 6899999888777643
No 206
>PRK15193 outer membrane usher protein; Provisional
Probab=24.73 E-value=3.3e+02 Score=36.56 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=57.3
Q ss_pred eeeecCCcceeeceeccc---ceeeeeeccccceEEeeCCCceeeEEeeeeeeccceeEEe-eeeeeeEEeeCCCccee-
Q 000982 267 HAVSDADGKFMFKSVPCG---QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE- 341 (1201)
Q Consensus 267 ~~~TD~~G~f~f~~LppG---~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sv~G~V~d~~G~pl~- 341 (1201)
...||..|.-.++.|.|= +..|.+..-+.+ .++.-....+....+.+.+ ..|.+. +..+-=++ +.+|+||+
T Consensus 734 ~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~d--vel~~t~~~VvPt~GAvv~-~~F~~~~g~~~ll~l-~~~G~plPf 809 (876)
T PRK15193 734 GLKTDWRGYAVVPYATSYRENRIALDAASLKDN--VDLENAVVNVVPTKGALVL-AEFNAHVGARALMTL-SHQGIPLPF 809 (876)
T ss_pred CCeECCCCeEEECCCCccccceEEECCCCCCCC--eEecccEEEEEecCCcEEE-EEEEEeeeeEEEEEE-ccCCcCCCC
Confidence 489999999999998862 222222110111 1111111222222222222 124321 22222233 44799885
Q ss_pred eEEEEE-cCcccccccCCceeeeeeeec-ceeEEee
Q 000982 342 GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1201)
Q Consensus 342 Ga~V~l-~G~~~~~TDadG~y~~~~L~p-G~Y~I~~ 375 (1201)
|+.|.. +|+.+...+.+|.--+.+|++ |...|+-
T Consensus 810 Ga~V~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~w 845 (876)
T PRK15193 810 GATVTLDDQHNSGIVDDDGSVYLSGLPAQGVLHVRW 845 (876)
T ss_pred ceEEECCCCceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 777765 566668899999999999986 5666654
No 207
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=24.13 E-value=1.4e+02 Score=27.30 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=37.3
Q ss_pred eeeeecCCCceEeecccCCceEEEEEEEecCCCcccccccCCceEEEEeccCccccceE
Q 000982 976 EETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDF 1034 (1201)
Q Consensus 976 ~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~~~~~~P~~~~v~~~~~d~~~~~f 1034 (1201)
+...+...=+|+=++|.+|..|..++++.-. .+. |..+....|.+...|...++|
T Consensus 21 ~t~~~G~~R~F~T~~L~~G~~y~Y~v~a~~~--~dG--~~~t~~~~V~vrAGd~~~v~f 75 (75)
T TIGR03000 21 ETNGTGTVRTFTTPPLEAGKEYEYTVTAEYD--RDG--RILTRTRTVVVRAGDTVTVDF 75 (75)
T ss_pred EcccCccEEEEECCCCCCCCEEEEEEEEEEe--cCC--cEEEEEEEEEEcCCceEEeeC
Confidence 3344556667999999999999988886422 111 445667777777777766655
No 208
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=23.90 E-value=1.7e+02 Score=32.43 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=11.0
Q ss_pred eCCCceeeeeeec
Q 000982 448 VPPGEYRLSAMAA 460 (1201)
Q Consensus 448 L~PG~Y~v~~~~~ 460 (1201)
|++|.|++++...
T Consensus 160 lp~G~Y~~~V~a~ 172 (218)
T PRK09619 160 LQPGQYQLSVVSG 172 (218)
T ss_pred CCCceeEEEEEEe
Confidence 8999999999753
No 209
>PF12580 TPPII: Tripeptidyl peptidase II ; InterPro: IPR022229 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=23.87 E-value=1.3e+02 Score=32.49 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=40.1
Q ss_pred cccce-----eeeeeeeeeeeeecccceecccceeeecchhhccccccCcccccceeEEEEEecccccccccccCCCceE
Q 000982 3 SRDTL-----TYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPNGYY 77 (1201)
Q Consensus 3 ~~~~~-----~~~~~~~~~~~~~~~~~v~gcgGfv~~~~~~~~~~k~sd~~i~lsgv~V~L~~~~G~~~~~t~t~~nG~y 77 (1201)
.||.| ++-++|.|-...+.+.+|.=+-..+ .++= =+-.|++.=..|+|.++.++...+.-|+ .|
T Consensus 37 ~RD~lp~grqiy~L~LtY~f~~~k~~eV~p~~p~L-------~~~L---Yes~fesql~mifD~NK~~v~~gDayp~-~y 105 (194)
T PF12580_consen 37 PRDVLPDGRQIYELVLTYNFKLAKAGEVTPRLPLL-------SDLL---YESEFESQLWMIFDSNKQLVGSGDAYPH-RY 105 (194)
T ss_dssp SSSEETTTEE-EEEEEEEEEEESS-EEEEEE-TTT-------TT-S---SS-SSS---EEEE-TTS-EEEEE-SS-T-T-
T ss_pred hhhcCCCCceeEEEEEEEEEecCCceeEEEecccc-------cchh---hcccccceEEEEEcCCCcEEEccccCCc-cC
Confidence 45655 5556677766655544443222212 1111 1234668889999999998888766665 56
Q ss_pred EEEeeecceEEEE--EcCCC
Q 000982 78 FIPVYDKGSFVIK--VNGPE 95 (1201)
Q Consensus 78 ~i~~l~~G~Y~l~--~~~P~ 95 (1201)
.+.+ ++|+|+|+ +.+++
T Consensus 106 ~~kL-~KGdYtlrlqiRHe~ 124 (194)
T PF12580_consen 106 STKL-EKGDYTLRLQIRHED 124 (194)
T ss_dssp -EEE--SEEEEEEEEEEES-
T ss_pred cccc-CCccEEEEEEEecCC
Confidence 6777 89999995 45543
No 210
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=23.69 E-value=1.1e+02 Score=26.44 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=25.9
Q ss_pred ccceeEEEEEecccccccccccCCCceEEEEeeecceEEE
Q 000982 50 DYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVI 89 (1201)
Q Consensus 50 ~lsgv~V~L~~~~G~~~~~t~t~~nG~y~i~~l~~G~Y~l 89 (1201)
..+|-+ ++|--|+.-.+-+++++|.-.|+. +++.|.+
T Consensus 19 ~~ag~~--~~D~tGn~~~~vtid~dG~~~f~v-~~~s~SV 55 (57)
T PF09154_consen 19 NWAGKT--FYDYTGNSSETVTIDEDGWGEFPV-PPGSVSV 55 (57)
T ss_dssp GGTTEE--EEETTSSSSSEEEE-TTSEEEEEE--TTEEEE
T ss_pred ccCCCE--EEEccCCCCCeEEECCCeEEEEEE-CCCEEEE
Confidence 444544 455556666677889999999999 9999987
No 211
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=23.59 E-value=2.2e+02 Score=24.90 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=28.0
Q ss_pred cEEEEEEeecccCCCCceeeEEEeecCCcceeecccCCcc-eEEEEeec
Q 000982 508 LVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGK-YRLEVKRT 555 (1201)
Q Consensus 508 ~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~-Y~v~~~~~ 555 (1201)
+..|.....++. .......+......|.+.+|.||+ |.+++...
T Consensus 32 ~y~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~ 76 (85)
T PF00041_consen 32 GYRVEYRSVNST----SDWQEVTVPGNETSYTITGLQPGTTYEFRVRAV 76 (85)
T ss_dssp EEEEEEEETTSS----SEEEEEEEETTSSEEEEESCCTTSEEEEEEEEE
T ss_pred EEEEEEEecccc----eeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEE
Confidence 445555544432 113333444555599999999999 99998753
No 212
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=23.53 E-value=1e+02 Score=28.91 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=25.3
Q ss_pred ceeEEEEEecccccccccccCC-CceEE---EEeeecceEEEEEcC
Q 000982 52 SHVTVELRTLDGLVKESTQCAP-NGYYF---IPVYDKGSFVIKVNG 93 (1201)
Q Consensus 52 sgv~V~L~~~~G~~~~~t~t~~-nG~y~---i~~l~~G~Y~l~~~~ 93 (1201)
..+++.|.+++|+.+.....+- ||.|. .|- .+|.|.|.+.-
T Consensus 32 ~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~-~~G~~~i~V~~ 76 (93)
T smart00557 32 GELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPT-EPGDYTVTVKF 76 (93)
T ss_pred CcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeC-CCEeEEEEEEE
Confidence 3677888887775544444444 67666 233 56777776553
No 213
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=23.26 E-value=2.2e+02 Score=32.26 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCCcceeEEEeccCCCeeeeeee--cCccceee--ee-------ecCcceeeecc
Q 000982 146 GGPSNVNVELLSHSGDLISSVIT--SSEGSYLF--KN-------IIPGKYKLRAS 189 (1201)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~sttT--d~~G~f~F--~~-------l~PG~Y~l~~~ 189 (1201)
.+...|+|++++.+|+++++..- -..|.+.| ++ +++|.|++.+.
T Consensus 138 ~~a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~ 192 (259)
T PRK12812 138 EDSDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAV 192 (259)
T ss_pred CcCceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEE
Confidence 45567899999999987765432 33565444 33 67788888774
No 214
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=23.07 E-value=1.8e+02 Score=27.05 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=29.5
Q ss_pred ccceeEEEEEecccccccccccCCCceEEEEee----ecceEEEEEcC
Q 000982 50 DYSHVTVELRTLDGLVKESTQCAPNGYYFIPVY----DKGSFVIKVNG 93 (1201)
Q Consensus 50 ~lsgv~V~L~~~~G~~~~~t~t~~nG~y~i~~l----~~G~Y~l~~~~ 93 (1201)
++.|..|.|. .+|.+.....++ +|.+.+++- .+|.|+|.+.+
T Consensus 24 ~~~gs~ValS-~dg~l~G~ai~~-sG~ati~l~~~it~~~~~tlTit~ 69 (81)
T PF03785_consen 24 DVPGSYVALS-QDGDLYGKAIVN-SGNATINLTNPITDEGTLTLTITA 69 (81)
T ss_dssp SSTT-EEEEE-ETTEEEEEEE-B-TTEEEEE-SS--TT-SEEEEEEE-
T ss_pred cCCCcEEEEe-cCCEEEEEEEec-CceEEEECCcccCCCceEEEEEEE
Confidence 4558888885 689998888888 999998772 36888888776
No 215
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.67 E-value=94 Score=33.32 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=39.8
Q ss_pred CCcceeEEEeccCCCeeeeeeecCccceeeeeecCcceeeeccCC
Q 000982 147 GPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHP 191 (1201)
Q Consensus 147 plaGv~V~L~~~~g~~i~sttTd~~G~f~F~~l~PG~Y~l~~~~~ 191 (1201)
+-.|+.+++..++|+.+....-++.|+|.|.--.+|.|++-+..+
T Consensus 53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~ 97 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNK 97 (201)
T ss_pred CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCC
Confidence 667899999999998888888889999999988999999988664
No 216
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=22.50 E-value=2.2e+02 Score=26.70 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=25.8
Q ss_pred ceeEEEEEeccc--ccccccccCCCceEEE--EeeecceEEEE
Q 000982 52 SHVTVELRTLDG--LVKESTQCAPNGYYFI--PVYDKGSFVIK 90 (1201)
Q Consensus 52 sgv~V~L~~~~G--~~~~~t~t~~nG~y~i--~~l~~G~Y~l~ 90 (1201)
.+.+|-|+..++ ..++++... ||.|.+ +.-.|+-|.|.
T Consensus 24 ~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~~p~~~~l~ 65 (106)
T PF14289_consen 24 DGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLDEPGFYYLS 65 (106)
T ss_pred CCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCCCCEEEEEE
Confidence 577888887653 345555666 998885 44457888883
No 217
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.77 E-value=1e+02 Score=39.91 Aligned_cols=57 Identities=28% Similarity=0.302 Sum_probs=45.4
Q ss_pred ccCCCCCccEEEEEEecCccccccccceEEEEeeeCCCcceecccc-ccCccceeeecCCccceeeec
Q 000982 782 SVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPL-YDDITYNVEASKPGYYLRQVG 848 (1201)
Q Consensus 782 ~v~p~l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L-~~~~~y~i~a~k~gy~~~~~~ 848 (1201)
...-||+++.|.|+... ..+.+.+|+.||.-.+.=- +.+...+|+|+|+||+.....
T Consensus 11 ~t~qpl~~A~V~V~~N~----------t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv~ns~P 68 (807)
T PF10577_consen 11 STRQPLSDASVEVFGNQ----------TLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYVPNSVP 68 (807)
T ss_pred cCcccCCCCeEEEEece----------eEeecceecCCceEEEEEeccCCCeEEEEEecCCccCCCCC
Confidence 34689999999998532 4668899999999777633 457799999999999997653
No 218
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=21.21 E-value=1.5e+02 Score=25.42 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=25.4
Q ss_pred eEEeecCCCCCceeEEEeecccceeeeeeecCCCceEeecc
Q 000982 951 TITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGL 991 (1201)
Q Consensus 951 ~V~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL 991 (1201)
+|+++.-.|++| ..|+...++ +-..+|++|+|-|-|=
T Consensus 13 ~v~~v~~spi~G-lyeV~~~~~---~i~Y~~~dg~yli~G~ 49 (57)
T PF10411_consen 13 KVESVSPSPIPG-LYEVVLKGG---GILYVDEDGRYLIQGQ 49 (57)
T ss_dssp TCEEEEE-SSTT-EEEEEE-TT---EEEEEETTSSEEEES-
T ss_pred ceeEEEcCCCCC-eEEEEECCC---eEEEEcCCCCEEEEeE
Confidence 567888889999 445554232 4678999999999864
No 219
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=20.99 E-value=1.1e+02 Score=25.87 Aligned_cols=41 Identities=24% Similarity=0.500 Sum_probs=25.8
Q ss_pred cccCCCceEE--EEeeecceEEEEEcC--CCCCCcCCCceeEEEc
Q 000982 69 TQCAPNGYYF--IPVYDKGSFVIKVNG--PEGWSWNPDKVAVTVD 109 (1201)
Q Consensus 69 t~t~~nG~y~--i~~l~~G~Y~l~~~~--P~G~~~~p~~~~v~Vd 109 (1201)
++.+.+|.|. ++....|.|.|++++ ..|=.-......+.||
T Consensus 6 ~t~~~~G~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~~~~~~tiD 50 (54)
T PF13754_consen 6 TTVDSDGNWSFTVPALADGTYTITVTATDAAGNTSTSSSVTFTID 50 (54)
T ss_pred EEECCCCcEEEeCCCCCCccEEEEEEEEeCCCCCCCccceeEEEe
Confidence 4556789888 466678999997665 4454444444445554
No 220
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.99 E-value=1.3e+02 Score=32.29 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=31.6
Q ss_pred EeccCC--CeeeeeeecCccceee-eeecCcceeeeccCCCcEEE
Q 000982 155 LLSHSG--DLISSVITSSEGSYLF-KNIIPGKYKLRASHPNLSVE 196 (1201)
Q Consensus 155 L~~~~g--~~i~sttTd~~G~f~F-~~l~PG~Y~l~~~~~g~~~~ 196 (1201)
|.+..| -.+.+..||+.|.-.- ..|.||.|.+..++.||...
T Consensus 247 LKdSkGaDVpVTsVITnssG~~vTNgqLsaGtYtVTySAsGY~DV 291 (301)
T PF06488_consen 247 LKDSKGADVPVTSVITNSSGNVVTNGQLSAGTYTVTYSASGYADV 291 (301)
T ss_pred cccCCCCcceeEEEEEcCCCcEeecCcccCceEEEEEeccccccc
Confidence 445555 2356788999998654 36899999999999999854
No 221
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.85 E-value=1.1e+02 Score=34.72 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=29.8
Q ss_pred cceeEEEEEecccccccccccC--CCce--EEEEe-------eecceEEEEEcC
Q 000982 51 YSHVTVELRTLDGLVKESTQCA--PNGY--YFIPV-------YDKGSFVIKVNG 93 (1201)
Q Consensus 51 lsgv~V~L~~~~G~~~~~t~t~--~nG~--y~i~~-------l~~G~Y~l~~~~ 93 (1201)
...++|+++|.+|+++++..-. +.|. |..+. +++|.|++++.+
T Consensus 140 a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 140 SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 3489999999999998775432 2464 44444 567888887753
No 222
>KOG3306 consensus Predicted membrane protein [Function unknown]
Probab=20.40 E-value=1.1e+02 Score=32.02 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=34.6
Q ss_pred EEecccccccccccCCCceEEEEeeecceEEEEEcCCCCCCcCCCceeEE
Q 000982 58 LRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVT 107 (1201)
Q Consensus 58 L~~~~G~~~~~t~t~~nG~y~i~~l~~G~Y~l~~~~P~G~~~~p~~~~v~ 107 (1201)
|+--+|..+.-..|+ |.|.....+-|+|.+++.+|+ +.++|..++++
T Consensus 15 liv~~~~f~gF~~td--~sf~~~d~ptgty~V~V~~s~-vi~~p~rv~i~ 61 (185)
T KOG3306|consen 15 LIVNGGEFVGFASTD--GSFGSEDSPTGTYRVEVPSSD-VIGHPARVSIT 61 (185)
T ss_pred eEeccceEEEEEeec--cccccccCCceeEEEEecCcc-eeecceEEEee
Confidence 333345555554554 999988889999999999998 88888766543
No 223
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.38 E-value=98 Score=35.70 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=28.4
Q ss_pred ceeEEEEEecccccccccccCC----CceEEEE--e-------eecceEEEEEc
Q 000982 52 SHVTVELRTLDGLVKESTQCAP----NGYYFIP--V-------YDKGSFVIKVN 92 (1201)
Q Consensus 52 sgv~V~L~~~~G~~~~~t~t~~----nG~y~i~--~-------l~~G~Y~l~~~ 92 (1201)
+.++|+++|.+|+++.+..-.+ .|.+.|. + +++|.|++++.
T Consensus 166 ~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~ 219 (295)
T PRK05842 166 GVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAE 219 (295)
T ss_pred ceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEE
Confidence 4799999999999988764432 3654433 2 46788887764
No 224
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=20.13 E-value=95 Score=26.93 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.1
Q ss_pred CCCceEeecccCCceEEEEEEEec
Q 000982 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1201)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1201)
....|.|.+|.|+..|.+++.+-.
T Consensus 55 ~~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 55 SETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred cccEEEEccccCCCEEEEEEEEEC
Confidence 667899999999999999998753
No 225
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=20.04 E-value=1.4e+03 Score=26.42 Aligned_cols=38 Identities=13% Similarity=0.417 Sum_probs=22.8
Q ss_pred ceeEEEeccCCCeeeeeeecCccceeee-----eecCcceeeecc
Q 000982 150 NVNVELLSHSGDLISSVITSSEGSYLFK-----NIIPGKYKLRAS 189 (1201)
Q Consensus 150 Gv~V~L~~~~g~~i~sttTd~~G~f~F~-----~l~PG~Y~l~~~ 189 (1201)
|..|.+.. +|. ..+.+.+++|.|++. .|..|.|.|.+.
T Consensus 75 g~~v~v~~-~g~-~~t~~~~~~G~ws~t~~~~~~l~~g~~ti~v~ 117 (317)
T PF13753_consen 75 GSTVTVTI-NGT-TGTLTADADGNWSVTVTPSDDLPDGDYTITVT 117 (317)
T ss_pred CCEEEEEE-CCE-EEEEEEecCCcEEEeeccccccccCcceeEEE
Confidence 34444443 343 345557799997765 245678888765
Done!