Query 000983
Match_columns 1199
No_of_seqs 708 out of 5619
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 12:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-87 2.2E-92 815.2 46.3 629 16-672 7-653 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.4E-65 1.2E-69 656.8 50.6 711 170-1129 183-945 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-43 3.9E-48 392.7 14.9 281 176-466 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.2E-35 2.7E-40 386.8 27.3 522 538-1127 69-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.5E-34 3.2E-39 376.8 27.5 497 562-1126 69-583 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 1.4E-28 3.1E-33 254.1 -17.4 447 586-1126 86-540 (565)
7 KOG0444 Cytoskeletal regulator 99.9 1.3E-26 2.9E-31 251.2 -6.1 177 589-833 5-184 (1255)
8 KOG0618 Serine/threonine phosp 99.9 2.1E-26 4.6E-31 262.8 -7.9 460 585-1155 39-510 (1081)
9 KOG4194 Membrane glycoprotein 99.9 4.8E-25 1E-29 238.3 2.2 353 593-1073 80-447 (873)
10 PLN03210 Resistant to P. syrin 99.9 6.2E-22 1.4E-26 257.0 24.7 138 557-698 553-692 (1153)
11 KOG4194 Membrane glycoprotein 99.9 2.3E-23 5E-28 225.4 4.1 384 537-1052 51-449 (873)
12 KOG0472 Leucine-rich repeat pr 99.9 6.5E-26 1.4E-30 234.6 -14.9 442 540-1103 70-540 (565)
13 KOG0618 Serine/threonine phosp 99.8 5.5E-24 1.2E-28 243.3 -9.3 418 558-1078 41-489 (1081)
14 KOG0444 Cytoskeletal regulator 99.8 1.2E-23 2.7E-28 228.3 -8.1 183 581-832 22-207 (1255)
15 PRK15387 E3 ubiquitin-protein 99.6 5.1E-14 1.1E-18 168.9 17.0 253 777-1102 203-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 3.9E-14 8.4E-19 169.9 14.7 76 591-675 201-276 (788)
17 KOG4237 Extracellular matrix p 99.5 9.9E-16 2.2E-20 159.7 -1.3 265 576-857 76-358 (498)
18 KOG4237 Extracellular matrix p 99.4 2E-14 4.3E-19 150.1 -1.7 276 536-834 65-358 (498)
19 PRK04841 transcriptional regul 99.4 4.1E-11 9E-16 156.2 24.8 276 197-516 31-332 (903)
20 KOG0617 Ras suppressor protein 99.3 2.2E-14 4.7E-19 132.0 -5.4 102 589-692 31-132 (264)
21 KOG0617 Ras suppressor protein 99.3 2.5E-14 5.4E-19 131.6 -5.2 106 587-695 52-158 (264)
22 PRK15370 E3 ubiquitin-protein 99.3 2.8E-12 6.1E-17 155.4 9.4 94 591-696 178-271 (754)
23 PRK15370 E3 ubiquitin-protein 99.3 8.6E-12 1.9E-16 151.2 12.2 74 592-672 221-294 (754)
24 KOG4658 Apoptotic ATPase [Sign 99.2 5.2E-12 1.1E-16 155.5 6.5 124 589-715 543-671 (889)
25 PRK00411 cdc6 cell division co 99.2 1.8E-09 3.8E-14 125.8 26.5 304 169-494 28-358 (394)
26 TIGR02928 orc1/cdc6 family rep 99.1 1E-08 2.2E-13 118.0 25.5 302 171-495 15-351 (365)
27 TIGR03015 pepcterm_ATPase puta 99.1 5E-09 1.1E-13 115.0 21.5 182 198-387 43-242 (269)
28 PF01637 Arch_ATPase: Archaeal 99.1 7.7E-10 1.7E-14 119.1 11.9 193 173-382 1-233 (234)
29 COG2909 MalT ATP-dependent tra 99.0 1.3E-08 2.9E-13 118.5 21.3 289 181-518 25-340 (894)
30 PRK00080 ruvB Holliday junctio 99.0 2.9E-09 6.3E-14 119.5 11.9 280 171-497 25-313 (328)
31 TIGR00635 ruvB Holliday juncti 98.9 2.9E-08 6.3E-13 111.0 17.4 272 171-497 4-292 (305)
32 PF05729 NACHT: NACHT domain 98.9 1.1E-08 2.5E-13 103.1 12.0 144 199-347 1-163 (166)
33 cd00116 LRR_RI Leucine-rich re 98.9 5.2E-10 1.1E-14 126.8 1.1 87 587-673 19-120 (319)
34 cd00116 LRR_RI Leucine-rich re 98.8 3E-10 6.5E-15 128.7 -1.7 203 595-833 2-232 (319)
35 COG2256 MGS1 ATPase related to 98.8 9.6E-08 2.1E-12 102.2 14.2 179 168-381 27-210 (436)
36 PRK06893 DNA replication initi 98.8 7.7E-08 1.7E-12 101.5 13.1 156 198-387 39-207 (229)
37 PTZ00112 origin recognition co 98.7 6E-07 1.3E-11 105.7 18.0 214 170-388 754-987 (1164)
38 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.2E-13 118.3 4.6 107 587-697 112-219 (394)
39 KOG4341 F-box protein containi 98.7 2.3E-10 4.9E-15 121.5 -9.4 151 992-1152 293-456 (483)
40 PRK13342 recombination factor 98.6 4.7E-07 1E-11 104.9 16.3 179 171-386 12-199 (413)
41 PF14580 LRR_9: Leucine-rich r 98.6 1.8E-08 3.9E-13 99.2 2.3 82 590-673 41-125 (175)
42 KOG0532 Leucine-rich repeat (L 98.6 3.4E-09 7.4E-14 116.8 -3.4 107 586-697 93-199 (722)
43 PF14580 LRR_9: Leucine-rich r 98.6 2.2E-08 4.7E-13 98.6 2.5 123 589-715 17-143 (175)
44 TIGR03420 DnaA_homol_Hda DnaA 98.6 9.1E-07 2E-11 94.2 15.0 172 176-387 22-205 (226)
45 KOG0532 Leucine-rich repeat (L 98.5 5.3E-09 1.1E-13 115.3 -3.8 193 590-832 74-270 (722)
46 PF13401 AAA_22: AAA domain; P 98.5 2.7E-07 5.9E-12 88.7 8.0 117 198-316 4-125 (131)
47 PRK15386 type III secretion pr 98.5 4.5E-07 9.9E-12 100.1 10.6 159 926-1129 51-215 (426)
48 PF05496 RuvB_N: Holliday junc 98.5 8.8E-07 1.9E-11 88.8 11.4 182 171-388 24-226 (233)
49 PLN03150 hypothetical protein; 98.4 1.9E-07 4.2E-12 113.6 6.3 103 592-696 419-524 (623)
50 TIGR02903 spore_lon_C ATP-depe 98.4 3.3E-05 7.1E-10 93.3 24.8 203 171-386 154-398 (615)
51 KOG1259 Nischarin, modulator o 98.4 4.2E-08 9.2E-13 99.4 -0.2 106 587-696 303-408 (490)
52 cd00009 AAA The AAA+ (ATPases 98.4 2.1E-06 4.5E-11 84.7 11.7 124 174-317 1-130 (151)
53 PRK05564 DNA polymerase III su 98.4 8.4E-06 1.8E-10 91.0 17.6 180 171-383 4-190 (313)
54 COG3903 Predicted ATPase [Gene 98.4 9.3E-07 2E-11 95.7 9.5 298 197-518 13-316 (414)
55 PRK14963 DNA polymerase III su 98.4 1.4E-06 3.1E-11 101.8 11.7 195 171-380 14-214 (504)
56 KOG3207 Beta-tubulin folding c 98.4 4.7E-08 1E-12 104.9 -0.7 185 610-834 117-313 (505)
57 PRK12402 replication factor C 98.4 8.9E-06 1.9E-10 92.7 17.7 196 171-382 15-225 (337)
58 KOG3207 Beta-tubulin folding c 98.4 6.1E-08 1.3E-12 104.0 -0.0 132 733-875 141-280 (505)
59 PRK07003 DNA polymerase III su 98.4 9.6E-06 2.1E-10 95.6 17.7 198 171-383 16-221 (830)
60 PRK14961 DNA polymerase III su 98.4 1.4E-05 2.9E-10 90.9 18.6 195 171-380 16-217 (363)
61 PRK12323 DNA polymerase III su 98.4 3.6E-05 7.8E-10 89.8 21.8 196 171-383 16-225 (700)
62 PF13855 LRR_8: Leucine rich r 98.4 4.5E-07 9.7E-12 73.1 4.5 57 592-648 2-60 (61)
63 PF13191 AAA_16: AAA ATPase do 98.4 7.3E-07 1.6E-11 91.7 7.4 47 172-221 1-47 (185)
64 KOG1259 Nischarin, modulator o 98.4 8.4E-08 1.8E-12 97.2 0.4 121 589-715 282-402 (490)
65 COG4886 Leucine-rich repeat (L 98.3 2.4E-07 5.2E-12 108.1 3.8 197 594-838 96-293 (394)
66 COG1474 CDC6 Cdc6-related prot 98.3 2.8E-05 6.1E-10 87.1 19.8 209 172-387 18-242 (366)
67 COG3899 Predicted ATPase [Gene 98.3 1.3E-05 2.7E-10 100.3 18.8 311 172-515 1-385 (849)
68 PF13173 AAA_14: AAA domain 98.3 2.4E-06 5.3E-11 81.1 9.7 120 198-339 2-127 (128)
69 PRK14960 DNA polymerase III su 98.3 1.4E-05 3E-10 93.4 17.1 196 171-381 15-217 (702)
70 PRK14949 DNA polymerase III su 98.3 1.4E-05 3E-10 96.4 17.1 183 171-383 16-221 (944)
71 PRK15386 type III secretion pr 98.3 1.5E-06 3.2E-11 96.2 8.1 137 969-1125 51-188 (426)
72 PRK08727 hypothetical protein; 98.3 2.2E-05 4.7E-10 83.2 16.4 148 199-380 42-201 (233)
73 KOG2028 ATPase related to the 98.3 1.2E-05 2.5E-10 84.4 13.6 160 197-378 161-331 (554)
74 PF13855 LRR_8: Leucine rich r 98.3 7.9E-07 1.7E-11 71.7 4.0 59 614-672 1-60 (61)
75 PRK04195 replication factor C 98.3 5.3E-05 1.1E-09 89.8 21.1 247 171-465 14-271 (482)
76 KOG4341 F-box protein containi 98.3 2.2E-08 4.8E-13 106.7 -6.5 164 970-1133 242-420 (483)
77 PLN03025 replication factor C 98.3 2.4E-05 5.2E-10 87.5 17.0 182 171-380 13-197 (319)
78 PRK14957 DNA polymerase III su 98.3 2.1E-05 4.6E-10 92.1 17.1 185 171-385 16-223 (546)
79 PRK06645 DNA polymerase III su 98.2 3.4E-05 7.3E-10 89.9 18.2 196 171-380 21-226 (507)
80 PLN03150 hypothetical protein; 98.2 1.3E-06 2.8E-11 106.5 6.7 104 564-672 420-526 (623)
81 cd01128 rho_factor Transcripti 98.2 2.2E-06 4.8E-11 90.3 7.6 89 198-287 16-113 (249)
82 PRK00440 rfc replication facto 98.2 3.6E-05 7.8E-10 87.0 18.0 181 171-381 17-201 (319)
83 PRK13341 recombination factor 98.2 1.3E-05 2.7E-10 97.6 14.5 173 171-377 28-211 (725)
84 PRK08084 DNA replication initi 98.2 4.8E-05 1E-09 80.7 17.0 156 198-387 45-213 (235)
85 PRK14956 DNA polymerase III su 98.2 1.9E-05 4.1E-10 89.8 14.4 193 171-378 18-217 (484)
86 PRK08903 DnaA regulatory inact 98.2 3.5E-05 7.5E-10 81.9 15.6 152 198-387 42-203 (227)
87 PRK09376 rho transcription ter 98.2 4.9E-06 1.1E-10 90.9 8.3 98 182-287 158-266 (416)
88 KOG1909 Ran GTPase-activating 98.2 4.2E-07 9E-12 95.2 0.0 239 585-857 24-310 (382)
89 PRK14962 DNA polymerase III su 98.1 4.8E-05 1.1E-09 88.3 16.7 187 171-387 14-223 (472)
90 PRK08691 DNA polymerase III su 98.1 4.7E-05 1E-09 90.1 16.3 196 171-381 16-218 (709)
91 PRK09112 DNA polymerase III su 98.1 5.4E-05 1.2E-09 84.6 16.1 197 170-384 22-241 (351)
92 PRK05642 DNA replication initi 98.1 7.3E-05 1.6E-09 79.1 16.4 156 198-387 45-212 (234)
93 PTZ00202 tuzin; Provisional 98.1 3.5E-05 7.6E-10 84.5 13.8 164 168-345 259-432 (550)
94 PRK09087 hypothetical protein; 98.1 3.5E-05 7.5E-10 80.8 13.5 146 198-387 44-199 (226)
95 PRK07471 DNA polymerase III su 98.1 9.9E-05 2.2E-09 82.9 18.0 196 171-384 19-239 (365)
96 TIGR02397 dnaX_nterm DNA polym 98.1 0.00011 2.5E-09 84.2 18.8 183 171-384 14-219 (355)
97 PF00308 Bac_DnaA: Bacterial d 98.1 6.3E-05 1.4E-09 78.6 15.0 164 197-385 33-210 (219)
98 TIGR01242 26Sp45 26S proteasom 98.1 2.7E-05 5.8E-10 89.0 13.4 180 170-377 121-328 (364)
99 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.2E-12 96.8 -5.8 159 615-835 186-351 (419)
100 PRK07940 DNA polymerase III su 98.1 0.00012 2.5E-09 83.0 17.6 181 171-383 5-213 (394)
101 TIGR00678 holB DNA polymerase 98.1 0.00011 2.3E-09 75.5 15.9 90 276-378 95-186 (188)
102 PRK14087 dnaA chromosomal repl 98.1 0.0001 2.2E-09 85.6 17.4 169 198-387 141-323 (450)
103 KOG2227 Pre-initiation complex 98.1 8.6E-05 1.9E-09 81.4 15.3 215 169-387 148-376 (529)
104 PRK07994 DNA polymerase III su 98.1 8.7E-05 1.9E-09 88.4 16.7 193 171-382 16-219 (647)
105 PRK05896 DNA polymerase III su 98.1 0.00013 2.7E-09 85.7 17.6 196 171-385 16-223 (605)
106 PRK14964 DNA polymerase III su 98.0 0.00015 3.2E-09 83.9 17.8 181 171-380 13-214 (491)
107 PRK14958 DNA polymerase III su 98.0 0.0001 2.2E-09 86.7 16.6 177 171-380 16-217 (509)
108 KOG0531 Protein phosphatase 1, 98.0 8.1E-07 1.8E-11 103.5 -0.9 105 587-696 91-195 (414)
109 PRK14951 DNA polymerase III su 98.0 0.00013 2.8E-09 86.8 17.2 195 171-381 16-223 (618)
110 PRK14969 DNA polymerase III su 98.0 0.00019 4.1E-09 85.2 18.1 180 171-383 16-221 (527)
111 COG2255 RuvB Holliday junction 98.0 0.00018 3.9E-09 73.8 15.1 174 171-380 26-220 (332)
112 PRK14955 DNA polymerase III su 97.9 6.5E-05 1.4E-09 86.5 12.8 194 171-380 16-225 (397)
113 PF12799 LRR_4: Leucine Rich r 97.9 8.4E-06 1.8E-10 59.7 3.5 34 615-648 2-35 (44)
114 PRK14959 DNA polymerase III su 97.9 0.00023 5E-09 84.0 17.3 198 171-387 16-225 (624)
115 PF05621 TniB: Bacterial TniB 97.9 0.00022 4.7E-09 75.6 15.4 193 179-379 45-257 (302)
116 PHA02544 44 clamp loader, smal 97.9 0.0001 2.2E-09 83.0 13.4 148 171-345 21-171 (316)
117 KOG2120 SCF ubiquitin ligase, 97.9 1.1E-07 2.3E-12 96.7 -9.3 175 949-1124 187-373 (419)
118 PRK14970 DNA polymerase III su 97.9 0.00039 8.5E-09 79.8 18.4 177 171-379 17-205 (367)
119 PRK11331 5-methylcytosine-spec 97.9 3.7E-05 8.1E-10 86.3 9.3 110 171-291 175-286 (459)
120 PRK09111 DNA polymerase III su 97.9 0.00032 7E-09 83.8 17.6 197 171-383 24-233 (598)
121 PRK14950 DNA polymerase III su 97.9 0.00044 9.4E-09 83.7 18.9 197 171-385 16-223 (585)
122 CHL00181 cbbX CbbX; Provisiona 97.9 0.00052 1.1E-08 74.7 17.5 163 172-350 24-212 (287)
123 TIGR00767 rho transcription te 97.9 5.6E-05 1.2E-09 83.4 9.8 90 197-287 167-265 (415)
124 KOG0531 Protein phosphatase 1, 97.9 3.5E-06 7.6E-11 98.2 0.3 103 589-697 70-172 (414)
125 PRK14954 DNA polymerase III su 97.8 0.00026 5.6E-09 84.6 15.8 201 171-383 16-229 (620)
126 PRK07133 DNA polymerase III su 97.8 0.00055 1.2E-08 82.2 17.9 192 171-384 18-221 (725)
127 PRK03992 proteasome-activating 97.8 0.00015 3.2E-09 83.1 12.8 161 170-350 130-318 (389)
128 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.7E-10 57.6 3.8 40 591-630 1-40 (44)
129 PRK06620 hypothetical protein; 97.8 0.00058 1.3E-08 70.9 15.9 136 199-382 45-188 (214)
130 KOG0989 Replication factor C, 97.8 0.00022 4.8E-09 74.1 12.3 184 170-377 35-224 (346)
131 TIGR02881 spore_V_K stage V sp 97.8 0.0005 1.1E-08 74.5 15.7 160 172-349 7-193 (261)
132 PRK08451 DNA polymerase III su 97.8 0.0011 2.3E-08 77.7 18.8 194 171-383 14-218 (535)
133 TIGR02880 cbbX_cfxQ probable R 97.8 0.00072 1.6E-08 73.8 16.6 134 200-349 60-210 (284)
134 PRK14952 DNA polymerase III su 97.8 0.00084 1.8E-08 79.8 18.2 202 171-387 13-224 (584)
135 KOG1909 Ran GTPase-activating 97.8 6.7E-06 1.5E-10 86.3 0.5 241 608-878 24-310 (382)
136 TIGR00362 DnaA chromosomal rep 97.8 0.00076 1.7E-08 78.4 17.6 159 198-381 136-308 (405)
137 PRK07764 DNA polymerase III su 97.7 0.0007 1.5E-08 83.8 17.7 195 171-380 15-218 (824)
138 PRK14953 DNA polymerase III su 97.7 0.0013 2.9E-08 76.9 18.9 184 171-384 16-221 (486)
139 PRK14971 DNA polymerase III su 97.7 0.0011 2.3E-08 80.1 18.4 176 171-380 17-219 (614)
140 KOG1859 Leucine-rich repeat pr 97.7 1.2E-06 2.5E-11 99.8 -6.4 108 585-697 181-289 (1096)
141 PRK06305 DNA polymerase III su 97.7 0.001 2.2E-08 77.5 17.3 182 171-383 17-223 (451)
142 PRK12422 chromosomal replicati 97.7 0.0018 3.8E-08 75.2 18.6 154 198-376 141-306 (445)
143 PRK14948 DNA polymerase III su 97.7 0.0016 3.4E-08 78.7 18.5 197 171-384 16-223 (620)
144 TIGR02639 ClpA ATP-dependent C 97.7 0.00045 9.7E-09 86.2 14.4 156 171-347 182-358 (731)
145 KOG2982 Uncharacterized conser 97.6 1.8E-05 3.9E-10 80.9 1.6 87 587-673 67-158 (418)
146 PRK14086 dnaA chromosomal repl 97.6 0.0014 3.1E-08 77.1 17.2 157 199-380 315-485 (617)
147 KOG2543 Origin recognition com 97.6 0.00084 1.8E-08 72.0 13.6 167 170-346 5-192 (438)
148 PRK14088 dnaA chromosomal repl 97.6 0.0017 3.7E-08 75.5 17.7 160 198-381 130-303 (440)
149 PRK00149 dnaA chromosomal repl 97.6 0.0016 3.5E-08 76.7 17.6 159 198-381 148-320 (450)
150 PRK07399 DNA polymerase III su 97.6 0.002 4.3E-08 71.1 17.1 197 171-384 4-222 (314)
151 KOG1859 Leucine-rich repeat pr 97.6 3.7E-06 7.9E-11 95.9 -4.3 108 558-673 183-291 (1096)
152 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00062 1.3E-08 85.5 14.7 154 171-347 187-363 (852)
153 PF05673 DUF815: Protein of un 97.6 0.0027 5.8E-08 65.3 16.0 109 168-303 24-133 (249)
154 PF00004 AAA: ATPase family as 97.6 0.0003 6.5E-09 67.5 8.8 96 201-316 1-111 (132)
155 PTZ00361 26 proteosome regulat 97.6 0.0003 6.4E-09 80.5 9.9 159 171-349 183-369 (438)
156 PRK06647 DNA polymerase III su 97.5 0.0024 5.2E-08 76.1 17.7 197 171-382 16-219 (563)
157 CHL00095 clpC Clp protease ATP 97.5 0.00064 1.4E-08 85.9 13.7 156 171-346 179-353 (821)
158 PRK08116 hypothetical protein; 97.5 0.00039 8.6E-09 74.9 9.5 104 199-317 115-221 (268)
159 PRK05563 DNA polymerase III su 97.5 0.0032 7E-08 75.4 18.1 191 171-380 16-217 (559)
160 TIGR00763 lon ATP-dependent pr 97.5 0.0077 1.7E-07 75.8 22.1 165 171-347 320-505 (775)
161 PRK14965 DNA polymerase III su 97.5 0.0025 5.4E-08 76.8 17.0 195 171-384 16-222 (576)
162 PRK05707 DNA polymerase III su 97.5 0.003 6.6E-08 70.1 16.1 97 276-383 105-203 (328)
163 COG0593 DnaA ATPase involved i 97.4 0.0015 3.2E-08 73.0 12.8 137 197-350 112-260 (408)
164 PTZ00454 26S protease regulato 97.4 0.00074 1.6E-08 76.9 10.4 158 171-348 145-330 (398)
165 PRK10787 DNA-binding ATP-depen 97.4 0.015 3.2E-07 72.4 22.4 166 170-347 321-506 (784)
166 smart00382 AAA ATPases associa 97.4 0.001 2.2E-08 64.8 10.1 88 199-290 3-91 (148)
167 PF14516 AAA_35: AAA-like doma 97.4 0.0069 1.5E-07 67.9 17.6 200 171-390 11-246 (331)
168 TIGR03689 pup_AAA proteasome A 97.4 0.0018 3.8E-08 75.4 13.0 166 171-348 182-379 (512)
169 KOG4579 Leucine-rich repeat (L 97.4 3.2E-05 6.9E-10 69.9 -0.9 86 587-673 49-135 (177)
170 PRK11034 clpA ATP-dependent Cl 97.3 0.0015 3.2E-08 80.4 12.7 157 171-347 186-362 (758)
171 KOG3665 ZYG-1-like serine/thre 97.3 0.00016 3.4E-09 87.9 4.1 129 539-673 123-262 (699)
172 PRK08181 transposase; Validate 97.3 0.0012 2.6E-08 70.7 10.1 100 200-317 108-209 (269)
173 PRK10536 hypothetical protein; 97.3 0.0023 5.1E-08 66.6 11.3 134 172-317 56-213 (262)
174 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0028 6E-08 80.5 14.5 157 171-347 173-349 (852)
175 TIGR00602 rad24 checkpoint pro 97.3 0.0024 5.1E-08 76.5 13.0 51 170-221 83-133 (637)
176 COG0542 clpA ATP-binding subun 97.2 0.0085 1.8E-07 72.2 17.4 132 171-315 491-642 (786)
177 PRK12377 putative replication 97.2 0.00067 1.5E-08 71.6 7.3 101 199-316 102-205 (248)
178 KOG1514 Origin recognition com 97.2 0.01 2.2E-07 69.0 16.4 210 171-387 396-625 (767)
179 KOG2982 Uncharacterized conser 97.2 6.7E-05 1.5E-09 76.9 -1.0 102 592-697 46-156 (418)
180 PRK07952 DNA replication prote 97.2 0.0022 4.7E-08 67.6 10.2 103 198-316 99-204 (244)
181 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0063 1.4E-07 65.8 14.0 122 177-316 8-160 (262)
182 COG3267 ExeA Type II secretory 97.1 0.023 4.9E-07 58.3 16.5 183 196-386 49-248 (269)
183 KOG4579 Leucine-rich repeat (L 97.1 0.00011 2.3E-09 66.6 0.1 81 576-657 62-142 (177)
184 PRK10865 protein disaggregatio 97.1 0.0038 8.3E-08 78.8 13.7 45 171-221 178-222 (857)
185 TIGR01241 FtsH_fam ATP-depende 97.1 0.012 2.6E-07 70.3 17.2 180 170-377 54-260 (495)
186 PRK08939 primosomal protein Dn 97.1 0.0024 5.2E-08 70.1 10.3 122 175-316 135-260 (306)
187 PF04665 Pox_A32: Poxvirus A32 97.1 0.0019 4.1E-08 67.0 8.9 36 199-236 14-49 (241)
188 CHL00176 ftsH cell division pr 97.1 0.0071 1.5E-07 73.1 15.0 177 171-375 183-386 (638)
189 KOG0991 Replication factor C, 97.1 0.009 1.9E-07 59.5 12.6 44 171-220 27-70 (333)
190 COG1373 Predicted ATPase (AAA+ 97.0 0.0088 1.9E-07 68.6 14.4 119 200-343 39-163 (398)
191 PF01695 IstB_IS21: IstB-like 97.0 0.00047 1E-08 69.2 3.6 100 199-316 48-149 (178)
192 KOG2004 Mitochondrial ATP-depe 97.0 0.0068 1.5E-07 70.3 13.1 107 170-288 410-516 (906)
193 PRK08058 DNA polymerase III su 97.0 0.013 2.8E-07 65.6 15.3 166 172-345 6-180 (329)
194 PRK08769 DNA polymerase III su 97.0 0.028 6.2E-07 61.8 17.3 187 178-384 11-209 (319)
195 PRK06526 transposase; Provisio 97.0 0.0015 3.3E-08 69.5 7.3 100 199-317 99-201 (254)
196 KOG3665 ZYG-1-like serine/thre 97.0 0.00023 5E-09 86.5 1.1 132 561-696 121-259 (699)
197 PF13177 DNA_pol3_delta2: DNA 97.0 0.011 2.4E-07 58.4 12.7 136 175-334 1-161 (162)
198 PRK13531 regulatory ATPase Rav 97.0 0.0034 7.3E-08 71.6 9.9 150 172-346 21-193 (498)
199 PRK08118 topology modulation p 97.0 0.0004 8.7E-09 69.1 2.3 34 200-233 3-37 (167)
200 COG5238 RNA1 Ran GTPase-activa 97.0 0.00028 6E-09 71.5 1.1 86 588-673 27-132 (388)
201 PRK09183 transposase/IS protei 97.0 0.0028 6.2E-08 68.0 8.9 100 199-316 103-205 (259)
202 PRK06090 DNA polymerase III su 96.9 0.03 6.4E-07 61.5 16.5 176 179-383 11-201 (319)
203 PRK06921 hypothetical protein; 96.9 0.0024 5.1E-08 68.8 7.8 99 198-316 117-224 (266)
204 COG0466 Lon ATP-dependent Lon 96.9 0.0071 1.5E-07 70.6 11.8 166 170-348 322-509 (782)
205 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0032 7E-08 79.2 9.4 136 170-316 565-718 (852)
206 PRK06871 DNA polymerase III su 96.8 0.058 1.3E-06 59.5 17.5 176 180-380 11-200 (325)
207 PRK10865 protein disaggregatio 96.8 0.016 3.6E-07 73.3 14.8 137 171-316 568-720 (857)
208 COG1222 RPT1 ATP-dependent 26S 96.7 0.055 1.2E-06 58.1 16.0 188 172-388 152-372 (406)
209 CHL00095 clpC Clp protease ATP 96.7 0.0045 9.7E-08 78.4 9.6 136 171-316 509-661 (821)
210 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0072 1.6E-07 76.8 11.2 137 171-316 565-717 (852)
211 KOG1644 U2-associated snRNP A' 96.7 0.0033 7.2E-08 61.5 6.0 82 970-1053 42-124 (233)
212 KOG1644 U2-associated snRNP A' 96.7 0.0016 3.4E-08 63.6 3.8 107 590-698 41-151 (233)
213 TIGR02639 ClpA ATP-dependent C 96.7 0.0081 1.8E-07 75.2 11.2 122 171-304 454-580 (731)
214 PF02562 PhoH: PhoH-like prote 96.7 0.0059 1.3E-07 61.9 8.0 130 176-317 5-156 (205)
215 PF07728 AAA_5: AAA domain (dy 96.7 0.00072 1.6E-08 65.5 1.4 89 201-302 2-90 (139)
216 PRK05541 adenylylsulfate kinas 96.7 0.0083 1.8E-07 60.7 9.2 36 197-234 6-41 (176)
217 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0017 3.6E-08 71.3 4.3 50 172-221 52-101 (361)
218 PRK06835 DNA replication prote 96.6 0.0025 5.5E-08 70.4 5.8 102 199-316 184-288 (329)
219 KOG0741 AAA+-type ATPase [Post 96.6 0.023 5.1E-07 63.6 12.8 149 195-373 535-704 (744)
220 PRK07261 topology modulation p 96.6 0.0046 9.9E-08 61.9 6.8 22 200-221 2-23 (171)
221 COG1484 DnaC DNA replication p 96.6 0.0031 6.6E-08 67.3 5.8 80 198-294 105-184 (254)
222 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.017 3.6E-07 56.1 10.2 117 199-318 3-139 (159)
223 PRK12608 transcription termina 96.6 0.01 2.3E-07 65.5 9.8 98 180-286 120-229 (380)
224 PLN00020 ribulose bisphosphate 96.6 0.061 1.3E-06 58.9 15.1 26 196-221 146-171 (413)
225 TIGR01243 CDC48 AAA family ATP 96.5 0.012 2.7E-07 73.9 11.7 180 171-378 178-382 (733)
226 COG2607 Predicted ATPase (AAA+ 96.5 0.013 2.8E-07 59.1 9.1 122 169-317 58-183 (287)
227 CHL00195 ycf46 Ycf46; Provisio 96.5 0.02 4.4E-07 66.9 12.2 160 171-350 228-408 (489)
228 PRK11889 flhF flagellar biosyn 96.5 0.022 4.7E-07 63.1 11.4 113 197-312 240-357 (436)
229 COG0470 HolB ATPase involved i 96.5 0.016 3.5E-07 65.6 11.0 142 172-333 2-167 (325)
230 PRK04296 thymidine kinase; Pro 96.4 0.0072 1.6E-07 61.7 7.2 114 199-319 3-118 (190)
231 TIGR01243 CDC48 AAA family ATP 96.4 0.034 7.3E-07 70.0 14.6 180 170-377 452-657 (733)
232 PRK07993 DNA polymerase III su 96.4 0.13 2.7E-06 57.5 17.4 178 179-381 10-202 (334)
233 COG1875 NYN ribonuclease and A 96.4 0.011 2.4E-07 63.3 8.3 132 175-315 228-386 (436)
234 PRK04132 replication factor C 96.4 0.074 1.6E-06 65.9 16.3 155 206-383 574-731 (846)
235 PRK09361 radB DNA repair and r 96.3 0.016 3.5E-07 61.4 9.5 47 196-245 21-67 (225)
236 TIGR02902 spore_lonB ATP-depen 96.3 0.021 4.6E-07 68.3 11.4 169 171-348 65-277 (531)
237 KOG2228 Origin recognition com 96.3 0.038 8.2E-07 58.7 11.5 173 171-348 24-220 (408)
238 PRK06964 DNA polymerase III su 96.3 0.061 1.3E-06 59.8 14.0 94 276-384 131-226 (342)
239 PF00910 RNA_helicase: RNA hel 96.3 0.0081 1.8E-07 54.7 6.1 21 201-221 1-21 (107)
240 COG1223 Predicted ATPase (AAA+ 96.3 0.068 1.5E-06 54.5 12.8 160 170-349 120-299 (368)
241 PF14532 Sigma54_activ_2: Sigm 96.3 0.0046 1E-07 59.6 4.6 108 174-317 1-110 (138)
242 KOG2123 Uncharacterized conser 96.3 0.00038 8.2E-09 70.9 -3.0 82 589-673 17-100 (388)
243 KOG2739 Leucine-rich acidic nu 96.3 0.0017 3.7E-08 66.4 1.4 83 613-697 42-126 (260)
244 TIGR02237 recomb_radB DNA repa 96.3 0.015 3.2E-07 60.8 8.5 49 196-247 10-58 (209)
245 PF00158 Sigma54_activat: Sigm 96.2 0.019 4.2E-07 56.9 8.7 129 173-316 1-143 (168)
246 COG2812 DnaX DNA polymerase II 96.2 0.017 3.6E-07 66.9 9.2 189 171-376 16-213 (515)
247 PF13207 AAA_17: AAA domain; P 96.2 0.0037 7.9E-08 58.8 3.2 21 200-220 1-21 (121)
248 PRK11034 clpA ATP-dependent Cl 96.2 0.018 3.8E-07 71.1 9.8 121 171-303 458-583 (758)
249 cd01393 recA_like RecA is a b 96.2 0.03 6.5E-07 59.4 10.4 89 196-287 17-124 (226)
250 PF07693 KAP_NTPase: KAP famil 96.2 0.25 5.5E-06 55.8 18.6 40 179-221 4-43 (325)
251 PHA00729 NTP-binding motif con 96.1 0.012 2.5E-07 60.5 6.7 24 198-221 17-40 (226)
252 PRK05800 cobU adenosylcobinami 96.1 0.0099 2.2E-07 59.1 6.0 152 200-380 3-169 (170)
253 KOG0733 Nuclear AAA ATPase (VC 96.1 0.091 2E-06 60.3 14.0 194 171-388 190-411 (802)
254 PRK12724 flagellar biosynthesi 96.1 0.024 5.2E-07 63.8 9.4 24 197-220 222-245 (432)
255 COG0542 clpA ATP-binding subun 96.1 0.024 5.1E-07 68.5 9.9 155 171-347 170-346 (786)
256 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.022 4.7E-07 60.9 8.9 51 196-246 17-71 (235)
257 PF00448 SRP54: SRP54-type pro 96.1 0.022 4.8E-07 58.2 8.4 86 198-286 1-92 (196)
258 cd01120 RecA-like_NTPases RecA 96.0 0.03 6.5E-07 55.9 9.1 40 200-241 1-40 (165)
259 cd01133 F1-ATPase_beta F1 ATP 96.0 0.016 3.5E-07 61.5 7.2 87 198-286 69-172 (274)
260 PHA02244 ATPase-like protein 96.0 0.038 8.2E-07 60.9 10.0 36 178-221 107-142 (383)
261 cd01131 PilT Pilus retraction 96.0 0.017 3.7E-07 59.5 7.1 108 200-321 3-113 (198)
262 PRK13695 putative NTPase; Prov 96.0 0.014 3.1E-07 58.8 6.5 22 200-221 2-23 (174)
263 KOG2035 Replication factor C, 95.9 0.041 8.8E-07 56.7 9.1 185 173-383 15-229 (351)
264 PF00560 LRR_1: Leucine Rich R 95.9 0.0039 8.4E-08 37.9 1.1 19 616-634 2-20 (22)
265 KOG1947 Leucine rich repeat pr 95.9 0.00059 1.3E-08 82.4 -4.9 202 926-1129 187-416 (482)
266 COG1618 Predicted nucleotide k 95.9 0.0075 1.6E-07 56.8 3.4 23 199-221 6-28 (179)
267 KOG0744 AAA+-type ATPase [Post 95.8 0.12 2.5E-06 54.7 12.1 39 198-236 177-217 (423)
268 TIGR03499 FlhF flagellar biosy 95.8 0.028 6.1E-07 61.3 8.4 87 197-286 193-281 (282)
269 KOG2739 Leucine-rich acidic nu 95.8 0.0024 5.3E-08 65.4 0.0 107 589-698 41-154 (260)
270 cd00544 CobU Adenosylcobinamid 95.8 0.018 3.8E-07 57.2 6.1 148 201-378 2-167 (169)
271 PRK15455 PrkA family serine pr 95.8 0.0066 1.4E-07 70.1 3.3 49 172-220 77-125 (644)
272 PRK06696 uridine kinase; Valid 95.8 0.012 2.6E-07 62.1 5.0 42 176-220 3-44 (223)
273 cd01394 radB RadB. The archaea 95.7 0.046 9.9E-07 57.6 9.5 44 196-241 17-60 (218)
274 PRK08233 hypothetical protein; 95.7 0.03 6.5E-07 57.1 7.8 24 198-221 3-26 (182)
275 cd03214 ABC_Iron-Siderophores_ 95.7 0.089 1.9E-06 53.4 11.2 120 198-320 25-161 (180)
276 KOG0734 AAA+-type ATPase conta 95.7 0.058 1.3E-06 60.6 10.1 97 171-287 304-406 (752)
277 PRK08699 DNA polymerase III su 95.7 0.1 2.2E-06 58.0 12.3 71 276-346 112-184 (325)
278 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.088 1.9E-06 51.0 10.4 105 198-321 26-131 (144)
279 PF13604 AAA_30: AAA domain; P 95.7 0.011 2.4E-07 60.7 4.4 104 198-316 18-130 (196)
280 PF07724 AAA_2: AAA domain (Cd 95.7 0.011 2.3E-07 59.0 4.0 88 198-303 3-105 (171)
281 PRK05703 flhF flagellar biosyn 95.7 0.08 1.7E-06 61.2 11.6 102 198-302 221-326 (424)
282 KOG0731 AAA+-type ATPase conta 95.6 0.21 4.5E-06 60.2 14.9 182 171-379 311-520 (774)
283 KOG1969 DNA replication checkp 95.6 0.042 9.1E-07 64.3 8.8 87 195-301 323-411 (877)
284 PF05659 RPW8: Arabidopsis bro 95.6 0.21 4.5E-06 47.9 12.1 83 2-88 3-86 (147)
285 cd03238 ABC_UvrA The excision 95.6 0.073 1.6E-06 53.3 9.5 122 198-331 21-161 (176)
286 cd03247 ABCC_cytochrome_bd The 95.5 0.091 2E-06 53.2 10.3 118 198-321 28-161 (178)
287 PRK12723 flagellar biosynthesi 95.5 0.098 2.1E-06 59.2 11.3 104 197-303 173-282 (388)
288 PF13671 AAA_33: AAA domain; P 95.5 0.017 3.8E-07 56.1 4.8 21 200-220 1-21 (143)
289 TIGR02012 tigrfam_recA protein 95.5 0.027 5.8E-07 61.7 6.6 85 196-287 53-143 (321)
290 cd03228 ABCC_MRP_Like The MRP 95.5 0.092 2E-06 52.7 10.1 125 198-331 28-167 (171)
291 COG0714 MoxR-like ATPases [Gen 95.5 0.04 8.8E-07 62.0 8.3 110 172-303 25-138 (329)
292 PRK14722 flhF flagellar biosyn 95.5 0.04 8.6E-07 61.7 8.0 87 198-287 137-225 (374)
293 cd00983 recA RecA is a bacter 95.5 0.026 5.7E-07 61.8 6.4 85 196-287 53-143 (325)
294 TIGR01650 PD_CobS cobaltochela 95.5 0.18 3.8E-06 55.2 12.6 56 177-245 51-106 (327)
295 PRK12727 flagellar biosynthesi 95.4 0.059 1.3E-06 62.3 9.4 88 197-287 349-438 (559)
296 cd03216 ABC_Carb_Monos_I This 95.4 0.06 1.3E-06 53.5 8.3 117 198-321 26-146 (163)
297 TIGR00959 ffh signal recogniti 95.4 0.073 1.6E-06 61.1 9.9 26 196-221 97-122 (428)
298 TIGR00708 cobA cob(I)alamin ad 95.4 0.17 3.6E-06 49.9 11.0 117 199-317 6-140 (173)
299 cd03223 ABCD_peroxisomal_ALDP 95.4 0.17 3.6E-06 50.5 11.4 116 198-321 27-152 (166)
300 PRK00771 signal recognition pa 95.4 0.15 3.2E-06 58.8 12.4 26 196-221 93-118 (437)
301 TIGR01069 mutS2 MutS2 family p 95.4 0.04 8.6E-07 68.6 8.3 175 198-389 322-507 (771)
302 KOG0473 Leucine-rich repeat pr 95.3 0.00094 2E-08 66.2 -4.6 86 587-673 38-123 (326)
303 PRK14974 cell division protein 95.3 0.11 2.3E-06 57.7 10.7 89 197-288 139-233 (336)
304 KOG0730 AAA+-type ATPase [Post 95.3 0.2 4.4E-06 58.4 13.1 161 170-350 433-618 (693)
305 PF10443 RNA12: RNA12 protein; 95.3 0.54 1.2E-05 52.8 15.9 214 176-401 1-297 (431)
306 TIGR02238 recomb_DMC1 meiotic 95.3 0.073 1.6E-06 58.7 9.3 58 196-254 94-155 (313)
307 COG0572 Udk Uridine kinase [Nu 95.3 0.042 9.2E-07 55.7 6.6 78 196-278 6-85 (218)
308 KOG0733 Nuclear AAA ATPase (VC 95.2 0.17 3.7E-06 58.1 11.8 156 198-377 545-718 (802)
309 COG0464 SpoVK ATPases of the A 95.2 0.22 4.8E-06 59.8 13.9 135 196-350 274-426 (494)
310 KOG1051 Chaperone HSP104 and r 95.2 0.1 2.2E-06 64.2 10.8 121 171-304 562-687 (898)
311 PRK09354 recA recombinase A; P 95.2 0.043 9.2E-07 60.7 6.9 85 196-287 58-148 (349)
312 PF00560 LRR_1: Leucine Rich R 95.2 0.0088 1.9E-07 36.3 0.9 22 592-613 1-22 (22)
313 PF08423 Rad51: Rad51; InterP 95.1 0.059 1.3E-06 57.8 7.7 55 198-253 38-96 (256)
314 KOG0728 26S proteasome regulat 95.1 0.39 8.4E-06 48.6 12.6 192 172-387 147-367 (404)
315 PRK10867 signal recognition pa 95.1 0.069 1.5E-06 61.3 8.6 24 197-220 99-122 (433)
316 cd03115 SRP The signal recogni 95.1 0.12 2.7E-06 52.0 9.7 21 200-220 2-22 (173)
317 cd03222 ABC_RNaseL_inhibitor T 95.1 0.13 2.8E-06 51.6 9.6 103 198-321 25-136 (177)
318 PRK07667 uridine kinase; Provi 95.1 0.028 6E-07 57.7 4.9 37 180-220 3-39 (193)
319 PRK11608 pspF phage shock prot 95.1 0.062 1.3E-06 60.1 8.0 133 171-316 6-150 (326)
320 PRK15429 formate hydrogenlyase 95.0 0.087 1.9E-06 65.9 10.1 134 171-316 376-520 (686)
321 PF00485 PRK: Phosphoribulokin 95.0 0.086 1.9E-06 54.2 8.4 21 200-220 1-21 (194)
322 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.04 8.7E-07 57.3 5.8 119 198-323 29-160 (213)
323 PRK06067 flagellar accessory p 95.0 0.14 3E-06 54.6 10.1 87 196-287 23-130 (234)
324 TIGR02239 recomb_RAD51 DNA rep 95.0 0.12 2.6E-06 57.3 9.8 57 196-253 94-154 (316)
325 PRK05439 pantothenate kinase; 95.0 0.13 2.8E-06 56.1 9.8 26 195-220 83-108 (311)
326 PLN03187 meiotic recombination 94.9 0.13 2.8E-06 57.2 9.9 58 196-254 124-185 (344)
327 TIGR00064 ftsY signal recognit 94.9 0.086 1.9E-06 57.0 8.4 89 196-287 70-164 (272)
328 cd03282 ABC_MSH4_euk MutS4 hom 94.9 0.062 1.3E-06 55.4 7.0 119 198-325 29-159 (204)
329 KOG1947 Leucine rich repeat pr 94.9 0.0019 4.2E-08 77.9 -4.9 181 946-1127 187-389 (482)
330 PF07726 AAA_3: ATPase family 94.9 0.022 4.9E-07 52.2 3.2 28 201-230 2-29 (131)
331 TIGR01817 nifA Nif-specific re 94.9 0.14 3E-06 62.1 11.0 133 170-316 195-340 (534)
332 COG1121 ZnuC ABC-type Mn/Zn tr 94.8 0.17 3.6E-06 53.0 9.8 123 199-321 31-203 (254)
333 COG4618 ArpD ABC-type protease 94.8 0.069 1.5E-06 60.1 7.3 22 199-220 363-384 (580)
334 PRK04301 radA DNA repair and r 94.8 0.12 2.6E-06 57.7 9.5 56 197-253 101-160 (317)
335 PTZ00301 uridine kinase; Provi 94.8 0.031 6.8E-07 57.6 4.4 23 198-220 3-25 (210)
336 PRK09270 nucleoside triphospha 94.8 0.094 2E-06 55.5 8.2 25 196-220 31-55 (229)
337 cd03230 ABC_DR_subfamily_A Thi 94.8 0.12 2.7E-06 51.9 8.6 118 198-321 26-159 (173)
338 cd03246 ABCC_Protease_Secretio 94.7 0.14 3.1E-06 51.5 9.0 120 198-321 28-160 (173)
339 PRK12726 flagellar biosynthesi 94.7 0.26 5.7E-06 54.7 11.4 91 196-288 204-296 (407)
340 PRK05986 cob(I)alamin adenolsy 94.7 0.21 4.7E-06 49.9 9.7 119 198-318 22-159 (191)
341 PRK00889 adenylylsulfate kinas 94.7 0.18 4E-06 50.8 9.6 24 198-221 4-27 (175)
342 PRK07132 DNA polymerase III su 94.6 1.4 3.1E-05 48.1 16.9 152 197-382 17-184 (299)
343 TIGR00554 panK_bact pantothena 94.6 0.14 3.1E-06 55.4 9.1 25 196-220 60-84 (290)
344 cd02025 PanK Pantothenate kina 94.6 0.1 2.2E-06 54.6 7.8 21 200-220 1-21 (220)
345 KOG0735 AAA+-type ATPase [Post 94.6 0.071 1.5E-06 62.2 6.9 72 198-287 431-504 (952)
346 PF13238 AAA_18: AAA domain; P 94.6 0.025 5.4E-07 53.7 3.0 21 201-221 1-21 (129)
347 PLN03186 DNA repair protein RA 94.6 0.19 4E-06 56.1 10.1 58 196-254 121-182 (342)
348 TIGR02858 spore_III_AA stage I 94.6 0.41 8.9E-06 51.5 12.3 127 179-321 97-233 (270)
349 PRK06547 hypothetical protein; 94.6 0.047 1E-06 54.5 4.8 26 196-221 13-38 (172)
350 COG2884 FtsE Predicted ATPase 94.6 0.33 7.2E-06 47.5 10.2 58 266-324 144-204 (223)
351 cd02019 NK Nucleoside/nucleoti 94.5 0.027 5.8E-07 46.4 2.5 22 200-221 1-22 (69)
352 TIGR02974 phageshock_pspF psp 94.5 0.12 2.6E-06 57.8 8.5 130 173-316 1-143 (329)
353 COG0468 RecA RecA/RadA recombi 94.5 0.15 3.3E-06 54.5 8.7 88 196-286 58-150 (279)
354 COG4608 AppF ABC-type oligopep 94.5 0.18 3.9E-06 52.8 8.9 125 198-325 39-178 (268)
355 cd03229 ABC_Class3 This class 94.5 0.14 3.1E-06 51.8 8.3 23 198-220 26-48 (178)
356 PRK10733 hflB ATP-dependent me 94.4 0.19 4.2E-06 61.8 10.6 159 171-349 152-337 (644)
357 KOG2123 Uncharacterized conser 94.4 0.0078 1.7E-07 61.7 -1.2 82 585-667 35-123 (388)
358 PRK05480 uridine/cytidine kina 94.4 0.035 7.5E-07 58.0 3.6 25 196-220 4-28 (209)
359 cd01121 Sms Sms (bacterial rad 94.4 0.23 5.1E-06 56.2 10.3 82 197-286 81-167 (372)
360 COG1126 GlnQ ABC-type polar am 94.4 0.57 1.2E-05 47.1 11.6 23 198-220 28-50 (240)
361 PF00006 ATP-synt_ab: ATP synt 94.3 0.12 2.7E-06 53.3 7.4 82 199-286 16-114 (215)
362 COG0563 Adk Adenylate kinase a 94.3 0.063 1.4E-06 53.8 5.1 22 200-221 2-23 (178)
363 COG0194 Gmk Guanylate kinase [ 94.3 0.19 4.1E-06 49.3 8.1 24 198-221 4-27 (191)
364 PRK05022 anaerobic nitric oxid 94.3 0.16 3.5E-06 60.8 9.5 135 170-316 186-331 (509)
365 COG1102 Cmk Cytidylate kinase 94.2 0.067 1.5E-06 50.7 4.7 44 200-256 2-45 (179)
366 PRK06731 flhF flagellar biosyn 94.2 0.25 5.5E-06 53.0 9.8 102 198-302 75-181 (270)
367 cd01122 GP4d_helicase GP4d_hel 94.2 0.36 7.8E-06 52.8 11.5 52 198-252 30-81 (271)
368 PF12775 AAA_7: P-loop contain 94.2 0.065 1.4E-06 58.0 5.3 33 181-220 23-55 (272)
369 COG0396 sufC Cysteine desulfur 94.2 0.31 6.6E-06 49.4 9.4 63 268-330 153-217 (251)
370 PRK05973 replicative DNA helic 94.1 0.54 1.2E-05 49.3 11.7 145 198-350 64-227 (237)
371 PRK08533 flagellar accessory p 94.1 0.28 6E-06 51.8 9.8 48 198-249 24-71 (230)
372 PRK10463 hydrogenase nickel in 94.1 0.21 4.6E-06 53.6 8.9 86 196-287 102-194 (290)
373 TIGR00235 udk uridine kinase. 94.1 0.043 9.4E-07 57.1 3.7 25 196-220 4-28 (207)
374 KOG0651 26S proteasome regulat 94.0 0.2 4.3E-06 52.8 8.1 25 196-220 164-188 (388)
375 PTZ00088 adenylate kinase 1; P 94.0 0.054 1.2E-06 56.8 4.1 20 201-220 9-28 (229)
376 PF03215 Rad17: Rad17 cell cyc 94.0 0.21 4.5E-06 59.0 9.4 59 172-235 20-78 (519)
377 TIGR02236 recomb_radA DNA repa 94.0 0.26 5.6E-06 55.1 9.9 56 197-253 94-153 (310)
378 COG2842 Uncharacterized ATPase 94.0 1.3 2.8E-05 47.0 14.1 134 198-351 94-227 (297)
379 PF03308 ArgK: ArgK protein; 94.0 0.072 1.6E-06 55.3 4.8 66 179-248 14-79 (266)
380 TIGR00382 clpX endopeptidase C 94.0 0.27 5.9E-06 56.1 9.9 51 170-220 76-138 (413)
381 TIGR03877 thermo_KaiC_1 KaiC d 94.0 0.31 6.6E-06 52.0 9.9 50 196-249 19-68 (237)
382 cd02027 APSK Adenosine 5'-phos 93.9 0.19 4.2E-06 48.9 7.6 21 200-220 1-21 (149)
383 PRK14721 flhF flagellar biosyn 93.9 0.24 5.2E-06 56.6 9.3 86 198-286 191-278 (420)
384 PF01583 APS_kinase: Adenylyls 93.9 0.069 1.5E-06 51.6 4.2 35 198-234 2-36 (156)
385 KOG2170 ATPase of the AAA+ sup 93.8 0.15 3.3E-06 53.5 6.9 114 171-302 82-203 (344)
386 COG4088 Predicted nucleotide k 93.8 0.045 9.8E-07 53.8 2.8 22 199-220 2-23 (261)
387 cd02028 UMPK_like Uridine mono 93.8 0.092 2E-06 53.0 5.2 21 200-220 1-21 (179)
388 cd01135 V_A-ATPase_B V/A-type 93.8 0.25 5.3E-06 52.6 8.5 89 198-286 69-175 (276)
389 PRK14723 flhF flagellar biosyn 93.8 0.22 4.8E-06 60.8 9.2 87 198-287 185-273 (767)
390 cd03217 ABC_FeS_Assembly ABC-t 93.8 0.32 7E-06 50.2 9.4 24 198-221 26-49 (200)
391 PRK06762 hypothetical protein; 93.7 0.051 1.1E-06 54.4 3.2 23 198-220 2-24 (166)
392 PRK03839 putative kinase; Prov 93.7 0.047 1E-06 55.5 3.0 22 200-221 2-23 (180)
393 cd03240 ABC_Rad50 The catalyti 93.7 0.34 7.3E-06 50.1 9.4 61 269-331 131-195 (204)
394 cd03369 ABCC_NFT1 Domain 2 of 93.7 0.75 1.6E-05 47.9 12.1 60 270-331 136-196 (207)
395 TIGR00150 HI0065_YjeE ATPase, 93.7 0.093 2E-06 49.3 4.6 24 198-221 22-45 (133)
396 PRK06002 fliI flagellum-specif 93.7 0.26 5.7E-06 56.4 9.1 84 198-286 165-263 (450)
397 COG1703 ArgK Putative periplas 93.7 0.084 1.8E-06 55.5 4.7 66 181-250 38-103 (323)
398 cd03283 ABC_MutS-like MutS-lik 93.7 0.096 2.1E-06 53.8 5.2 22 199-220 26-47 (199)
399 PRK00625 shikimate kinase; Pro 93.7 0.046 1E-06 54.5 2.8 21 200-220 2-22 (173)
400 COG1136 SalX ABC-type antimicr 93.6 0.61 1.3E-05 48.1 10.8 63 267-331 150-215 (226)
401 PF12061 DUF3542: Protein of u 93.6 0.13 2.9E-06 53.7 6.0 76 13-88 297-373 (402)
402 cd03215 ABC_Carb_Monos_II This 93.6 0.45 9.7E-06 48.3 10.0 24 198-221 26-49 (182)
403 PF00154 RecA: recA bacterial 93.6 0.22 4.9E-06 54.4 8.1 85 196-287 51-141 (322)
404 PRK04040 adenylate kinase; Pro 93.6 0.056 1.2E-06 54.9 3.3 23 198-220 2-24 (188)
405 COG1428 Deoxynucleoside kinase 93.6 0.05 1.1E-06 54.3 2.8 24 198-221 4-27 (216)
406 cd01129 PulE-GspE PulE/GspE Th 93.6 0.29 6.3E-06 52.8 8.9 107 198-319 80-186 (264)
407 TIGR01420 pilT_fam pilus retra 93.5 0.18 4E-06 56.8 7.7 112 198-320 122-233 (343)
408 KOG0727 26S proteasome regulat 93.5 0.13 2.9E-06 51.9 5.6 51 171-221 155-212 (408)
409 cd01125 repA Hexameric Replica 93.5 0.51 1.1E-05 50.4 10.7 21 200-220 3-23 (239)
410 KOG0739 AAA+-type ATPase [Post 93.5 1.7 3.7E-05 45.6 13.5 157 171-349 133-314 (439)
411 TIGR03574 selen_PSTK L-seryl-t 93.5 0.22 4.9E-06 53.5 7.9 20 201-220 2-21 (249)
412 TIGR01360 aden_kin_iso1 adenyl 93.4 0.06 1.3E-06 55.2 3.3 24 197-220 2-25 (188)
413 PTZ00035 Rad51 protein; Provis 93.4 0.54 1.2E-05 52.6 10.9 57 196-253 116-176 (337)
414 PF08433 KTI12: Chromatin asso 93.4 0.062 1.3E-06 57.8 3.4 23 199-221 2-24 (270)
415 PRK06995 flhF flagellar biosyn 93.4 0.25 5.5E-06 57.3 8.5 24 198-221 256-279 (484)
416 cd03213 ABCG_EPDR ABCG transpo 93.4 0.66 1.4E-05 47.6 10.9 23 198-220 35-57 (194)
417 KOG0729 26S proteasome regulat 93.4 0.074 1.6E-06 54.1 3.6 55 173-229 179-240 (435)
418 COG1419 FlhF Flagellar GTP-bin 93.3 0.25 5.3E-06 55.0 7.8 88 197-287 202-291 (407)
419 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.092 2E-06 57.3 4.5 51 170-220 60-110 (358)
420 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.28 6E-06 48.5 7.7 116 199-322 26-145 (157)
421 PRK08972 fliI flagellum-specif 93.3 0.18 4E-06 57.3 6.9 85 198-286 162-261 (444)
422 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.3 6.4E-06 52.7 8.3 40 197-238 35-74 (259)
423 COG1936 Predicted nucleotide k 93.2 0.067 1.5E-06 51.5 2.8 20 200-219 2-21 (180)
424 cd03280 ABC_MutS2 MutS2 homolo 93.1 0.1 2.2E-06 53.9 4.5 22 198-219 28-49 (200)
425 TIGR03881 KaiC_arch_4 KaiC dom 93.1 0.57 1.2E-05 49.7 10.3 40 197-238 19-58 (229)
426 KOG1532 GTPase XAB1, interacts 93.1 0.2 4.4E-06 51.5 6.2 27 196-222 17-43 (366)
427 PRK10820 DNA-binding transcrip 93.1 0.31 6.7E-06 58.4 9.1 134 171-317 204-349 (520)
428 TIGR01425 SRP54_euk signal rec 93.1 0.27 5.8E-06 56.2 8.0 24 197-220 99-122 (429)
429 TIGR03740 galliderm_ABC gallid 93.1 0.76 1.7E-05 48.5 11.2 23 198-220 26-48 (223)
430 PTZ00185 ATPase alpha subunit; 93.1 0.36 7.7E-06 55.5 8.8 88 198-287 189-299 (574)
431 TIGR00390 hslU ATP-dependent p 93.1 0.25 5.5E-06 55.5 7.6 51 171-221 12-70 (441)
432 PRK12597 F0F1 ATP synthase sub 93.1 0.2 4.3E-06 57.8 6.9 88 198-286 143-246 (461)
433 cd03244 ABCC_MRP_domain2 Domai 93.1 0.77 1.7E-05 48.4 11.1 23 198-220 30-52 (221)
434 PRK13765 ATP-dependent proteas 93.1 0.12 2.7E-06 62.4 5.5 74 171-254 31-104 (637)
435 PRK00409 recombination and DNA 93.1 0.08 1.7E-06 66.2 4.1 186 197-400 326-522 (782)
436 COG0003 ArsA Predicted ATPase 93.0 0.13 2.8E-06 56.4 5.1 49 198-248 2-50 (322)
437 COG2019 AdkA Archaeal adenylat 93.0 0.09 1.9E-06 50.1 3.3 23 198-220 4-26 (189)
438 PF06309 Torsin: Torsin; Inte 92.9 0.14 3.1E-06 47.0 4.4 51 171-221 25-76 (127)
439 PRK10416 signal recognition pa 92.9 0.32 6.8E-06 53.9 8.1 25 197-221 113-137 (318)
440 cd03232 ABC_PDR_domain2 The pl 92.9 0.59 1.3E-05 48.0 9.6 23 198-220 33-55 (192)
441 PRK09280 F0F1 ATP synthase sub 92.8 0.35 7.5E-06 55.6 8.4 88 198-286 144-247 (463)
442 PRK08927 fliI flagellum-specif 92.8 0.4 8.6E-06 54.9 8.9 85 198-286 158-257 (442)
443 cd02024 NRK1 Nicotinamide ribo 92.8 0.067 1.4E-06 53.9 2.4 22 200-221 1-22 (187)
444 TIGR01313 therm_gnt_kin carboh 92.8 0.5 1.1E-05 47.0 8.8 20 201-220 1-20 (163)
445 cd02023 UMPK Uridine monophosp 92.7 0.07 1.5E-06 55.2 2.5 21 200-220 1-21 (198)
446 PRK12678 transcription termina 92.7 0.25 5.5E-06 57.3 6.9 98 182-286 405-512 (672)
447 TIGR01359 UMP_CMP_kin_fam UMP- 92.7 0.071 1.5E-06 54.4 2.4 21 200-220 1-21 (183)
448 PF13504 LRR_7: Leucine rich r 92.7 0.07 1.5E-06 29.9 1.3 14 616-629 3-16 (17)
449 CHL00206 ycf2 Ycf2; Provisiona 92.6 0.75 1.6E-05 60.9 11.7 26 197-222 1629-1654(2281)
450 TIGR03522 GldA_ABC_ATP gliding 92.6 0.85 1.9E-05 50.6 11.1 24 198-221 28-51 (301)
451 PRK05922 type III secretion sy 92.6 0.32 6.9E-06 55.6 7.7 85 198-286 157-256 (434)
452 PF03205 MobB: Molybdopterin g 92.6 0.16 3.5E-06 48.6 4.6 39 199-238 1-39 (140)
453 PRK08149 ATP synthase SpaL; Va 92.6 0.43 9.4E-06 54.5 8.7 85 198-286 151-250 (428)
454 PRK00279 adk adenylate kinase; 92.6 0.44 9.6E-06 49.9 8.3 21 200-220 2-22 (215)
455 COG2274 SunT ABC-type bacterio 92.6 31 0.00067 42.9 25.0 23 198-220 499-521 (709)
456 COG1066 Sms Predicted ATP-depe 92.6 0.28 6.1E-06 54.1 6.8 81 197-286 92-177 (456)
457 PRK09519 recA DNA recombinatio 92.5 0.27 5.9E-06 60.2 7.5 85 196-287 58-148 (790)
458 PRK05201 hslU ATP-dependent pr 92.5 0.28 6E-06 55.2 6.9 51 171-221 15-73 (443)
459 PRK13947 shikimate kinase; Pro 92.5 0.084 1.8E-06 53.1 2.8 21 200-220 3-23 (171)
460 PRK00131 aroK shikimate kinase 92.5 0.094 2E-06 53.0 3.1 23 198-220 4-26 (175)
461 smart00534 MUTSac ATPase domai 92.5 0.16 3.4E-06 51.8 4.7 21 200-220 1-21 (185)
462 PF03969 AFG1_ATPase: AFG1-lik 92.5 0.29 6.3E-06 55.1 7.2 104 196-318 60-168 (362)
463 PRK15453 phosphoribulokinase; 92.5 0.52 1.1E-05 50.2 8.5 24 197-220 4-27 (290)
464 PRK09544 znuC high-affinity zi 92.5 0.79 1.7E-05 49.3 10.3 24 198-221 30-53 (251)
465 PHA02774 E1; Provisional 92.5 0.45 9.7E-06 55.7 8.6 37 179-220 420-456 (613)
466 cd03285 ABC_MSH2_euk MutS2 hom 92.5 0.15 3.3E-06 53.4 4.6 120 197-323 29-159 (222)
467 cd03250 ABCC_MRP_domain1 Domai 92.4 2 4.3E-05 44.6 13.0 24 198-221 31-54 (204)
468 TIGR02322 phosphon_PhnN phosph 92.4 0.096 2.1E-06 53.2 3.0 23 199-221 2-24 (179)
469 TIGR00416 sms DNA repair prote 92.4 0.63 1.4E-05 54.4 10.1 53 180-238 80-132 (454)
470 PRK10751 molybdopterin-guanine 92.4 0.13 2.8E-06 50.8 3.7 25 197-221 5-29 (173)
471 PRK11823 DNA repair protein Ra 92.4 0.52 1.1E-05 55.1 9.4 40 197-238 79-118 (446)
472 TIGR00764 lon_rel lon-related 92.4 0.27 6E-06 59.7 7.3 74 171-255 18-92 (608)
473 cd02020 CMPK Cytidine monophos 92.4 0.085 1.8E-06 51.5 2.5 21 200-220 1-21 (147)
474 PRK06217 hypothetical protein; 92.3 0.091 2E-06 53.5 2.7 22 200-221 3-24 (183)
475 cd01134 V_A-ATPase_A V/A-type 92.3 0.8 1.7E-05 50.3 9.8 48 198-249 157-205 (369)
476 TIGR03498 FliI_clade3 flagella 92.3 0.5 1.1E-05 54.0 8.8 85 198-286 140-239 (418)
477 PF13306 LRR_5: Leucine rich r 92.3 0.22 4.7E-06 47.2 5.2 102 557-669 7-111 (129)
478 cd01136 ATPase_flagellum-secre 92.3 0.56 1.2E-05 51.7 8.8 83 198-286 69-168 (326)
479 COG0465 HflB ATP-dependent Zn 92.3 1.5 3.2E-05 52.1 12.7 159 170-348 149-334 (596)
480 cd03243 ABC_MutS_homologs The 92.3 0.18 4E-06 52.2 4.9 22 199-220 30-51 (202)
481 PF13481 AAA_25: AAA domain; P 92.3 0.55 1.2E-05 48.3 8.5 40 200-239 34-81 (193)
482 cd02021 GntK Gluconate kinase 92.3 0.091 2E-06 51.5 2.6 22 200-221 1-22 (150)
483 cd00227 CPT Chloramphenicol (C 92.3 0.11 2.3E-06 52.6 3.0 22 199-220 3-24 (175)
484 PF00625 Guanylate_kin: Guanyl 92.3 0.15 3.2E-06 51.9 4.2 37 198-236 2-38 (183)
485 PLN02924 thymidylate kinase 92.2 0.43 9.2E-06 49.8 7.6 27 196-222 14-40 (220)
486 PRK13949 shikimate kinase; Pro 92.2 0.098 2.1E-06 52.2 2.7 22 200-221 3-24 (169)
487 COG0541 Ffh Signal recognition 92.2 1.1 2.3E-05 50.3 10.7 73 180-255 79-156 (451)
488 PRK04328 hypothetical protein; 92.2 0.5 1.1E-05 50.7 8.3 41 197-239 22-62 (249)
489 KOG0736 Peroxisome assembly fa 92.2 0.36 7.9E-06 57.2 7.5 98 171-288 672-775 (953)
490 COG3640 CooC CO dehydrogenase 92.2 0.19 4.1E-06 51.0 4.5 41 200-242 2-43 (255)
491 PRK11388 DNA-binding transcrip 92.1 0.52 1.1E-05 58.6 9.6 130 171-316 325-466 (638)
492 KOG0924 mRNA splicing factor A 92.1 1.1 2.3E-05 52.3 10.8 141 178-332 359-528 (1042)
493 TIGR03880 KaiC_arch_3 KaiC dom 92.1 0.73 1.6E-05 48.7 9.3 48 197-248 15-62 (224)
494 PRK05917 DNA polymerase III su 92.1 1.5 3.2E-05 47.4 11.5 130 181-334 7-154 (290)
495 COG1120 FepC ABC-type cobalami 92.0 0.97 2.1E-05 47.7 9.8 23 198-220 28-50 (258)
496 PRK15115 response regulator Gl 92.0 0.85 1.8E-05 54.1 10.9 132 172-316 135-278 (444)
497 KOG3864 Uncharacterized conser 92.0 0.014 3.1E-07 57.3 -3.4 85 1018-1105 103-190 (221)
498 TIGR03305 alt_F1F0_F1_bet alte 92.0 0.34 7.4E-06 55.5 7.0 88 198-286 138-241 (449)
499 KOG3347 Predicted nucleotide k 92.0 0.11 2.4E-06 48.3 2.4 22 199-220 8-29 (176)
500 TIGR03263 guanyl_kin guanylate 91.9 0.12 2.6E-06 52.5 3.1 22 199-220 2-23 (180)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-87 Score=815.18 Aligned_cols=629 Identities=29% Similarity=0.473 Sum_probs=517.9
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000983 16 KAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEERQLKVPQLKDWLGKLRNAAYDAEDILETFATQVAMHK 95 (1199)
Q Consensus 16 ~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~~~~~~ 95 (1199)
..++++.+++.+++..+.+.++.+..|+++|..++.++++|++++.....++.|...+++++|++||.++.|.......+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~ 86 (889)
T KOG4658|consen 7 FGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERK 86 (889)
T ss_pred EehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888899999999999999999999999999999999999999999999999999999999999999988776554
Q ss_pred hhhhcc-c--ccccCcCCcchhhHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCCCcccccccCCc
Q 000983 96 RKQKLR-R--VRTPISGNKISYQYDAAQRIKKILDRLDVITEEKEKFHLSSGVNNNSGNSRNHNQDQELPLTGSFIDTAN 172 (1199)
Q Consensus 96 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1199)
....+. + .....+ ...+++..+..+..+..++-.+.+..+.+....-....... ...+....+.+...+..
T Consensus 87 ~~~~l~~~~~~~~~~c--~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~----~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 87 ANDLLSTRSVERQRLC--LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES----LDPREKVETRPIQSESD 160 (889)
T ss_pred HhHHhhhhHHHHHHHh--hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc----ccchhhcccCCCCcccc
Confidence 332221 0 011111 11456677778888888888888888887643211111000 00111222333333444
Q ss_pred cccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHHHHH
Q 000983 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
||.+..++++.+.|..++ ..+++|+||||+||||||++++|+.. ++.+|+.++||+||+.++...++.+|++
T Consensus 161 -VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred -ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 999999999999998876 38999999999999999999999987 9999999999999999999999999999
Q ss_pred hcccCCCC--CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhhh-hcCCCc
Q 000983 252 FHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQI-MGIRSP 328 (1199)
Q Consensus 252 ~~~~~~~~--~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~ 328 (1199)
.++..... ....+.++..+.+.|++|||+|||||||+. .+|+.+..++|....||||++|||++.|+.. +++...
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 88875444 333478999999999999999999999987 4799999999999899999999999999998 888889
Q ss_pred eeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhhhccccc
Q 000983 329 YLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKILSSDIWELE 408 (1199)
Q Consensus 329 ~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~ 408 (1199)
+++++|+++|||+||++.||..... .++.++++|++|+++|+|+|||++++|+.|+.|++.++|+++.+...+...
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~----~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLG----SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred ccccccCccccHHHHHHhhcccccc----ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 9999999999999999999987442 345589999999999999999999999999999999999999998777643
Q ss_pred cCC-CCCCCcccchhhcccCCChhhHHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHh
Q 000983 409 EGS-SNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLG 487 (1199)
Q Consensus 409 ~~~-~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~ 487 (1199)
... ...+.++++|++||+.||+++|.||+|||+||+||.|+++.||.+|+||||+.+..++... +++|+.|+.+|++
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~--~d~G~~~i~~LV~ 465 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA--EDVGYDYIEELVR 465 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch--hcchHHHHHHHHH
Confidence 332 3456899999999999999999999999999999999999999999999999875544444 8999999999999
Q ss_pred ccCcccccC-CCcceEEehHHHHHHHHHhcC-----CCccEEEEecC-CC--CcCCCCCCceeEEEEEeccCCCCccccc
Q 000983 488 RSFFQSSNI-DDKVKYQMHDLFHDLAQFVSS-----PYGHVCQVKDD-RS--SCSSCCSPETRHVSLLCKHVEKPALSVV 558 (1199)
Q Consensus 488 ~sll~~~~~-~~~~~~~mhdlv~~~a~~i~~-----~~~~~~~~~~~-~~--~~~~~~~~~~r~lsl~~~~~~~~~~~~~ 558 (1199)
++|++..+. ++..+|+|||+|||||.++++ +++. .+.++ .. ......+..+|+++++++.+..... .
T Consensus 466 ~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~--iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~--~ 541 (889)
T KOG4658|consen 466 ASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQ--IVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAG--S 541 (889)
T ss_pred HHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccce--EEECCcCccccccccchhheeEEEEeccchhhccC--C
Confidence 999998764 355789999999999999999 6653 33332 11 1111134578999999988766554 3
Q ss_pred cCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCC-CCcccCcccccCccccEEeccCCCccccchhhcccC
Q 000983 559 ENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSS-TLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1199)
Q Consensus 559 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1199)
..+++|++|.+. .... .+..+...+|..++.|+||||++| .+..+|++|+.|.|||||+|+++.|+.+|..+++|+
T Consensus 542 ~~~~~L~tLll~--~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 542 SENPKLRTLLLQ--RNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred CCCCccceEEEe--ecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHH
Confidence 456689999998 2111 356667788999999999999987 577999999999999999999999999999999999
Q ss_pred cccEEecCCCCcccccchhhccccccceeeccccc
Q 000983 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMF 672 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~ 672 (1199)
.|.+||+..+..+..+|..+..|++||+|.+....
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999988777777777789999999997653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.4e-65 Score=656.78 Aligned_cols=711 Identities=20% Similarity=0.314 Sum_probs=479.1
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEe---cCC-------
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV---TVD------- 239 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~------- 239 (1199)
.+++|||+..++++..+|.... .++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccc
Confidence 4569999999999999885433 5689999999999999999999998 67888998888742 111
Q ss_pred ----CC-hHHHHHHHHHhcccCCCC-CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEe
Q 000983 240 ----YD-LPRILKGMIEFHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVT 313 (1199)
Q Consensus 240 ----~~-~~~~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 313 (1199)
++ ...++++++..+...... .... ..+++.+++||+||||||||+. ..|+.+.....+.++||+||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 11 122344444443322111 1111 3466778999999999999865 5788888776677899999999
Q ss_pred cCCchhhhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCH
Q 000983 314 SRTARVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDV 393 (1199)
Q Consensus 314 tR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~ 393 (1199)
||+..++..++...+|+++.|++++||+||+++||+... +++++.+++++|+++|+|+||||+++|+.|+.+ +.
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-----~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~ 404 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-----PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DK 404 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-----CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CH
Confidence 999999988777889999999999999999999998654 446789999999999999999999999999975 67
Q ss_pred HHHHHHHhhhccccccCCCCCCCcccchhhcccCCCh-hhHHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCCCCc
Q 000983 394 NKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPP-FLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQE 472 (1199)
Q Consensus 394 ~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~ 472 (1199)
.+|+.++++..... +..|.++|++||++|++ ..|.||+++|+||.++.++ .+..|+|.+....
T Consensus 405 ~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------- 468 (1153)
T PLN03210 405 EDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------- 468 (1153)
T ss_pred HHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-------
Confidence 99999998754422 35799999999999986 5999999999999887553 4778888765431
Q ss_pred cHHHHHHHHHHHHHhccCcccccCCCcceEEehHHHHHHHHHhcCCCcc-----EEEEecCCC---CcCCCCCCceeEEE
Q 000983 473 REEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVSSPYGH-----VCQVKDDRS---SCSSCCSPETRHVS 544 (1199)
Q Consensus 473 ~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~i~~~~~~-----~~~~~~~~~---~~~~~~~~~~r~ls 544 (1199)
+..++.|+++||++... .++.|||++|+||+.++.++.. .+.+..... .........++.++
T Consensus 469 ------~~~l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~ 538 (1153)
T PLN03210 469 ------NIGLKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGIT 538 (1153)
T ss_pred ------hhChHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence 12388999999998753 4699999999999999876520 001100000 00000112233333
Q ss_pred EEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCC------Cc-ccCcccccCc-cc
Q 000983 545 LLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSST------LT-VLPDSVEELK-LL 616 (1199)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~------l~-~lp~~i~~l~-~L 616 (1199)
+....+. . ..+...+|.+|++|+.|.+.++. +. .+|..+..++ +|
T Consensus 539 l~~~~~~--------------~-------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~L 591 (1153)
T PLN03210 539 LDIDEID--------------E-------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKL 591 (1153)
T ss_pred eccCccc--------------e-------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCccc
Confidence 3211111 1 12234567788888888876543 22 4666666654 58
Q ss_pred cEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEE
Q 000983 617 RYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 617 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
|+|.+.++.++.+|..+ ...+|+.|++++|. +..+|.++..+++|+.|+|+++. .+..+| .++.+++|++|++.+
T Consensus 592 r~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~--~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 592 RLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSK--NLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred EEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCC--CcCcCC-ccccCCcccEEEecC
Confidence 88888888888888776 46788888888776 56677777777777777776652 123333 233333333333322
Q ss_pred ecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCC
Q 000983 697 VGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPN 776 (1199)
Q Consensus 697 ~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (1199)
|.
T Consensus 667 c~------------------------------------------------------------------------------ 668 (1153)
T PLN03210 667 CS------------------------------------------------------------------------------ 668 (1153)
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCC
Q 000983 777 LEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNC 855 (1199)
Q Consensus 777 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 855 (1199)
....+|..+ ..+++|+.|++++|...+.+ ....+++|+.|++++|..++
T Consensus 669 ---------~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~------------------- 718 (1153)
T PLN03210 669 ---------SLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK------------------- 718 (1153)
T ss_pred ---------Cccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcc-------------------
Confidence 112334333 34566666666666554444 11245566666666554433
Q ss_pred CCCCcCCCcCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEec
Q 000983 856 PRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAI 935 (1199)
Q Consensus 856 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~ 935 (1199)
.+|...++|+.|.+.++. +..+|.. ..+++|..|.+.
T Consensus 719 ----~~p~~~~nL~~L~L~~n~-i~~lP~~--------------------------------------~~l~~L~~L~l~ 755 (1153)
T PLN03210 719 ----SFPDISTNISWLDLDETA-IEEFPSN--------------------------------------LRLENLDELILC 755 (1153)
T ss_pred ----ccccccCCcCeeecCCCc-ccccccc--------------------------------------cccccccccccc
Confidence 333334455555554432 2222210 012333333333
Q ss_pred CCCCCCCCCCCCCCCcEEEccccccCCCCC--cccccccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCCCCCCC
Q 000983 936 NCPKLRGLPQIFAPQKLEISGCDLLSTLPN--SEFSQRLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLDSFPRW 1012 (1199)
Q Consensus 936 ~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~--~~~~~~L~~L~l~~~~-~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~ 1012 (1199)
+|.... + .+. ...++. ...+++|+.|++++|. ....|..+.++++|+.|++++|..+..+|..
T Consensus 756 ~~~~~~-l-----------~~~--~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 756 EMKSEK-L-----------WER--VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccchhh-c-----------ccc--ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 322110 0 000 000111 1234789999999987 5567778889999999999999888888876
Q ss_pred CCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCC-ccCCcceEEeccCCCCcccCCCCCCCCCC
Q 000983 1013 PNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG-LPTSLKCLIIASCSGLKSLGPRGTLKSLN 1091 (1199)
Q Consensus 1013 ~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~sL~~L~l~~c~~L~~lp~~~~l~~l~ 1091 (1199)
..+++|+.|++++|..+..+|. ..++|++|++++|. ++.+|... ..++|+.|++++|++++.+|. .+..++
T Consensus 822 ~~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~ 893 (1153)
T PLN03210 822 INLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLK 893 (1153)
T ss_pred CCccccCEEECCCCCccccccc-----cccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCCCcCccCc--cccccc
Confidence 6789999999999998887773 24688999999864 66776431 237899999999999999987 788899
Q ss_pred CCCceeecCCCCCCCCCCCCCCC--------------CcCeEEccCCcchHH
Q 000983 1092 SLKDFYIEDCPLLQSFPEDGLPE--------------NLQHLVIQNCPLLTQ 1129 (1199)
Q Consensus 1092 sL~~L~i~~c~~l~~lp~~~l~~--------------sL~~L~i~~c~~L~~ 1129 (1199)
+|+.|++++|++++.++....+. +...+.+.+|..|.+
T Consensus 894 ~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 894 HLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 99999999999888765433322 224456677777654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.8e-43 Score=392.65 Aligned_cols=281 Identities=34% Similarity=0.616 Sum_probs=228.8
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhccc
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK 255 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 255 (1199)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++||.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998753 569999999999999999999999977789999999999999999999999999999987
Q ss_pred CCC---CCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhhhhcC-CCceeC
Q 000983 256 MEQ---STSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGI-RSPYLL 331 (1199)
Q Consensus 256 ~~~---~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 331 (1199)
... ...+.+.+...+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 3567788999999999999999999999876 4788888888877889999999999999887765 678999
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhhhccccccCC
Q 000983 332 EYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKILSSDIWELEEGS 411 (1199)
Q Consensus 332 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~ 411 (1199)
++|+++||++||++.++.... . .++..++.+++|+++|+|+||||+++|++|+.+.+..+|.++++...+......
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~-~---~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~ 230 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKES-E---SPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR 230 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS--------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS
T ss_pred ccccccccccccccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999986651 1 345567889999999999999999999999766577899999987655553322
Q ss_pred CCCCCcccchhhcccCCChhhHHHHHHhccCCCCcccCHHHHHHHHHHccccccC
Q 000983 412 SNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSR 466 (1199)
Q Consensus 412 ~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~ 466 (1199)
.....+..++.+||+.||+++|.||+|||+||+++.|+++.++++|+|||||.+.
T Consensus 231 ~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 231 DYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp GSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 2345789999999999999999999999999999999999999999999999754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-35 Score=386.81 Aligned_cols=522 Identities=20% Similarity=0.175 Sum_probs=363.7
Q ss_pred CceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchh-hhHHHHhccCCcccEEecCCCCCc-ccCcccccCcc
Q 000983 538 PETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFG-RALDKIFHQLKYLRLLDLSSSTLT-VLPDSVEELKL 615 (1199)
Q Consensus 538 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~l~~ 615 (1199)
..++.+.+..+.+.......+..+++|+.|.+. .+.+. .++...|..+++|++|+|++|++. .+|. +.+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls-----~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLS-----NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECC-----CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 468888888887766555667889999999987 33343 455667779999999999999987 5664 56899
Q ss_pred ccEEeccCCCcc-ccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCe
Q 000983 616 LRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHV 694 (1199)
Q Consensus 616 Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l 694 (1199)
|++|+|++|.+. .+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+. +.+|..++++++|++|++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV--GQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc--CcCChHHcCcCCccEEEC
Confidence 999999999987 77989999999999999999888899999999999999999998764 567889999999999998
Q ss_pred EEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCC
Q 000983 695 FRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPH 774 (1199)
Q Consensus 695 ~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 774 (1199)
.++ ...+..+..++.+++|+ .|.+.... ........+.++++|+.|+++.|...... +..+..+
T Consensus 220 ~~n-~l~~~~p~~l~~l~~L~-~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------------p~~l~~l 283 (968)
T PLN00113 220 GYN-NLSGEIPYEIGGLTSLN-HLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPI-------------PPSIFSL 283 (968)
T ss_pred cCC-ccCCcCChhHhcCCCCC-EEECcCce-eccccChhHhCCCCCCEEECcCCeeeccC-------------chhHhhc
Confidence 875 34445556667777666 44443221 11223344566677777777666443211 1334455
Q ss_pred CCCcEEEEeecCC-CCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecC-CCCCccccccc
Q 000983 775 PNLEELQIFNYFG-NSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRL 850 (1199)
Q Consensus 775 ~~L~~L~l~~~~~-~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L 850 (1199)
++|+.|++++|.. ..+|.++ ..+++|+.|++++|.+.... .++.+++|+.|++++|.....++ .+..++.|+.+
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred cCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 6777777775433 3566666 45677777777777665544 46667777777777776554444 34556667777
Q ss_pred ccCCCCCCCcCCC---cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccc
Q 000983 851 KISNCPRLNELPE---CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQ 927 (1199)
Q Consensus 851 ~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 927 (1199)
++++|.....+|. .+++|+.|.+.++.-...+|. ....++
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-------------------------------------~~~~~~ 404 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-------------------------------------SLGACR 404 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-------------------------------------HHhCCC
Confidence 7777766555554 334555655555432222211 123456
Q ss_pred cccEEEecCCCCCCCC----CCCCCCCcEEEccccccCCCCCc-ccccccceeeecCCCCCccccCCCCCCCCCEEeecC
Q 000983 928 TLLEMKAINCPKLRGL----PQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSK 1002 (1199)
Q Consensus 928 ~L~~L~l~~c~~L~~l----~~~~~l~~L~l~~~~~~~~~p~~-~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~ 1002 (1199)
+|+.|.+.+|.-...+ ..++.++.|++++|.....+|.. ..+++|+.|++++|............++|+.|++++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 7777777776533222 34556778888888877666654 346888888888887443333333557888899999
Q ss_pred CCCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCC-ccCCcceEEeccCCCCcc
Q 000983 1003 ISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG-LPTSLKCLIIASCSGLKS 1080 (1199)
Q Consensus 1003 n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~sL~~L~l~~c~~L~~ 1080 (1199)
|.+.+.+|. +..+++|+.|++++|.....+| ..+.++++|++|+|++|.....+|... -.++|+.|++++|.....
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIP--DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCC--hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence 888777775 5788888999998888555566 467888889999999887665555431 127888999998887777
Q ss_pred cCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCcCeEEccCCcch
Q 000983 1081 LGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPLL 1127 (1199)
Q Consensus 1081 lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~l~~sL~~L~i~~c~~L 1127 (1199)
+|. .+.++++|+.|++++|+....+|..+...++....+.+++.+
T Consensus 563 ~p~--~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 563 IPK--NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred CCh--hHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 877 788888899999999987778887655555555555666543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-34 Score=376.76 Aligned_cols=497 Identities=20% Similarity=0.227 Sum_probs=368.7
Q ss_pred CCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCc-ccCcccc-cCccccEEeccCCCcc-ccchhhcccCc
Q 000983 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-VLPDSVE-ELKLLRYLDLSRTEIK-VLPNSICNLYN 638 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~-~l~~Lr~L~L~~~~i~-~lp~~i~~L~~ 638 (1199)
.++++|.+. .+.+...++..|..+++|++|+|++|.+. .+|..+. .+.+|++|+|++|.+. .+|. +.+++
T Consensus 69 ~~v~~L~L~-----~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLS-----GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEec-----CCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 467788776 33444455677899999999999999997 7888765 9999999999999987 4554 67999
Q ss_pred ccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCce
Q 000983 639 LQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKL 718 (1199)
Q Consensus 639 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L 718 (1199)
|++|++++|.+.+.+|..++++++|++|++++|.+. +.+|..++++++|++|++.++ ...+..+..++.+++|+ .+
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~-~L 217 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV--GKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLK-WI 217 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCccc--ccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCcc-EE
Confidence 999999999988899999999999999999999764 568899999999999999875 34445566777777776 44
Q ss_pred eeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCC-CCCCcccccC
Q 000983 719 HISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFG-NSLPQWMRDG 797 (1199)
Q Consensus 719 ~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~ 797 (1199)
.+.... ........+..+.+|+.|+++.|...... +..+..+++|+.|+++++.. ..+|.++ .
T Consensus 218 ~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------------p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~ 281 (968)
T PLN00113 218 YLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPI-------------PSSLGNLKNLQYLFLYQNKLSGPIPPSI--F 281 (968)
T ss_pred ECcCCc-cCCcCChhHhcCCCCCEEECcCceecccc-------------ChhHhCCCCCCEEECcCCeeeccCchhH--h
Confidence 443221 11223344566777788877776443222 23456667778888775543 4566666 4
Q ss_pred ccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecC-CCCCcccccccccCCCCCCCcCCC---cCCCcCeE
Q 000983 798 RLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVM 871 (1199)
Q Consensus 798 ~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L 871 (1199)
.+++|+.|++++|.+.... .+..+++|+.|++++|.....++ .+..++.|+.|++++|.....+|. .+++|+.|
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 5777888888777765544 46677788888887776554444 345667777777777776666655 34556666
Q ss_pred EEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCCCCC----CCC
Q 000983 872 KIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLP----QIF 947 (1199)
Q Consensus 872 ~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~----~~~ 947 (1199)
++.+|.-...+|. ....+++|+.|.+.++.-...+| .+.
T Consensus 362 ~Ls~n~l~~~~p~-------------------------------------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 362 DLSTNNLTGEIPE-------------------------------------GLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred ECCCCeeEeeCCh-------------------------------------hHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 6655432211111 12234667778887766444444 356
Q ss_pred CCCcEEEccccccCCCCCc-ccccccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEcc
Q 000983 948 APQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRD 1025 (1199)
Q Consensus 948 ~l~~L~l~~~~~~~~~p~~-~~~~~L~~L~l~~~~-~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~ 1025 (1199)
+++.|++++|.....+|.. ..+++|+.|++++|. ....+..+..+++|+.|++++|.+.+.+|.....++|+.|++++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 7899999999887777765 557899999999998 44555666788999999999999988888876778999999999
Q ss_pred CCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCC-ccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCC
Q 000983 1026 CKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG-LPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLL 1104 (1199)
Q Consensus 1026 c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l 1104 (1199)
|.....+| ..+.++++|+.|++++|.....+|... -.++|+.|+|++|.....+|. .+..+++|++|++++|...
T Consensus 485 n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 485 NQFSGAVP--RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA--SFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred CccCCccC--hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh--hHhCcccCCEEECCCCccc
Confidence 98555555 578899999999999998666676532 238999999999987777877 8999999999999999776
Q ss_pred CCCCCC-CCCCCcCeEEccCCcc
Q 000983 1105 QSFPED-GLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1105 ~~lp~~-~l~~sL~~L~i~~c~~ 1126 (1199)
..+|.. ...++|+.|++++|+.
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcc
Confidence 678864 3347899999999986
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.4e-28 Score=254.07 Aligned_cols=447 Identities=23% Similarity=0.262 Sum_probs=232.4
Q ss_pred HhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccce
Q 000983 586 IFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1199)
Q Consensus 586 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 665 (1199)
++.++..++.|+.++|++..+|+.++.+..|+.|+.++|.+.++|++|+.+..|+.|+..+|+ +.++|.+++++.+|..
T Consensus 86 aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~ 164 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHH
Confidence 455566666666666666666666666666666666666666666666666666666666655 5566666666666666
Q ss_pred eecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEE
Q 000983 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVF 745 (1199)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l 745 (1199)
|++.+|.+ ..+|+..-+|+.|++|+...+ ..+.....+..+.+|..|++
T Consensus 165 l~~~~n~l---~~l~~~~i~m~~L~~ld~~~N----------------------------~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 165 LDLEGNKL---KALPENHIAMKRLKHLDCNSN----------------------------LLETLPPELGGLESLELLYL 213 (565)
T ss_pred hhccccch---hhCCHHHHHHHHHHhcccchh----------------------------hhhcCChhhcchhhhHHHHh
Confidence 66666633 445555555666666654322 11222223333344444444
Q ss_pred EecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCCc
Q 000983 746 EWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSL 824 (1199)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L 824 (1199)
..|... ++..|..++.|++|++..|....+|..+. ..+++|..|+|.+|++.+.+ .+..+.+|
T Consensus 214 ~~Nki~---------------~lPef~gcs~L~Elh~g~N~i~~lpae~~-~~L~~l~vLDLRdNklke~Pde~clLrsL 277 (565)
T KOG0472|consen 214 RRNKIR---------------FLPEFPGCSLLKELHVGENQIEMLPAEHL-KHLNSLLVLDLRDNKLKEVPDEICLLRSL 277 (565)
T ss_pred hhcccc---------------cCCCCCccHHHHHHHhcccHHHhhHHHHh-cccccceeeeccccccccCchHHHHhhhh
Confidence 444322 11234444555555555555555555443 24555555555555555544 44445555
Q ss_pred CeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCCcCCCcCeEEEecccccccCCCCCchheeee-eccccccchh
Q 000983 825 RVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLIL-VDNLELENWN 903 (1199)
Q Consensus 825 ~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~-~~~~~~~~~~ 903 (1199)
.+|++++|.....+++.+++ .|+.|-+.+|+.-..-.. +.+|+.- .-++++.. +...++....
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~---------ii~~gT~------~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRRE---------IISKGTQ------EVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHH---------HHcccHH------HHHHHHHHhhccCCCCCCc
Confidence 55555555433333333333 334444444432110000 0000000 00000000 0000000000
Q ss_pred ccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCcEEEccccccCCCCCcccc----cccceeeecC
Q 000983 904 ERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNSEFS----QRLQLLALEG 979 (1199)
Q Consensus 904 ~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~~~~----~~L~~L~l~~ 979 (1199)
+.. ..........|+... ...+.+.|++++-. .+.+|...|- .-....+++.
T Consensus 342 ~~~---------e~~~t~~~~~~~~~~--------------~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 342 GGT---------ETAMTLPSESFPDIY--------------AIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred ccc---------cccCCCCCCcccchh--------------hhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEeccc
Confidence 000 000000000011000 01112334444422 3444543221 1255677777
Q ss_pred CCCCccccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcC
Q 000983 980 CPDGTLVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETL 1058 (1199)
Q Consensus 980 ~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l 1058 (1199)
|...+.|..+..+..+...-+..|+.++-+|. ++.+++|..|++++|. +.++| ..++++..|+.|+|+.| ....+
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP--~e~~~lv~Lq~LnlS~N-rFr~l 473 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLP--EEMGSLVRLQTLNLSFN-RFRML 473 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcc--hhhhhhhhhheeccccc-ccccc
Confidence 77777777776666666555555555555554 4778888888888877 77788 46777888888888887 35555
Q ss_pred CCCCccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCC-CCCCCcCeEEccCCcc
Q 000983 1059 PDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED-GLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1059 ~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~-~l~~sL~~L~i~~c~~ 1126 (1199)
|.........++.+..+..+..+++ .++.++.+|.+|++.++ .++.+|.. |...+|++|+++|+|.
T Consensus 474 P~~~y~lq~lEtllas~nqi~~vd~-~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 474 PECLYELQTLETLLASNNQIGSVDP-SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hHHHhhHHHHHHHHhccccccccCh-HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCcc
Confidence 5433223333333444455777776 25788888888888887 67888765 6678888888888876
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.3e-26 Score=251.17 Aligned_cols=177 Identities=21% Similarity=0.327 Sum_probs=130.4
Q ss_pred cCCcccEEecCCCCCc--ccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhcccccccee
Q 000983 589 QLKYLRLLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 666 (1199)
-++..|-.|+++|.++ .+|..+..+..++.|.|..+++..+|+.++.|.+|++|.+++|+ +.++-..+..|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHH
Confidence 3566778899999887 78999999999999999999999999999999999999999988 55666778889999999
Q ss_pred ecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEE
Q 000983 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~ 746 (1199)
.+..|++.+ ..+|..|-+|..|..|+++++. |.
T Consensus 84 ~~R~N~LKn-sGiP~diF~l~dLt~lDLShNq---------L~------------------------------------- 116 (1255)
T KOG0444|consen 84 IVRDNNLKN-SGIPTDIFRLKDLTILDLSHNQ---------LR------------------------------------- 116 (1255)
T ss_pred hhhcccccc-CCCCchhcccccceeeecchhh---------hh-------------------------------------
Confidence 999887744 5788888888888888877642 11
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCCcC
Q 000983 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLR 825 (1199)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~ 825 (1199)
+++..+..-.++-.|++++|.+.++|..++ .++..|-.|+|++|++...+ ....+.+|+
T Consensus 117 -------------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 117 -------------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred -------------------hcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 122334444566677777777777777654 45666667777776654444 444555666
Q ss_pred eEEecCCC
Q 000983 826 VLNIKGML 833 (1199)
Q Consensus 826 ~L~L~~~~ 833 (1199)
+|.|++|+
T Consensus 177 tL~Ls~NP 184 (1255)
T KOG0444|consen 177 TLKLSNNP 184 (1255)
T ss_pred hhhcCCCh
Confidence 66666654
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-26 Score=262.78 Aligned_cols=460 Identities=23% Similarity=0.247 Sum_probs=285.3
Q ss_pred HHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccc
Q 000983 585 KIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLR 664 (1199)
Q Consensus 585 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 664 (1199)
.+..+.-.|++||+++|.+..+|..+..+.+|+.|+++.|.|...|.+.+++.+|++|+|.+|. +..+|.++..+++|+
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQ 117 (1081)
T ss_pred HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhccc
Confidence 3444444599999999999999999999999999999999999999999999999999999776 899999999999999
Q ss_pred eeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCC-CceeeCCcccccccccccccccccccee
Q 000983 665 NLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLT-GKLHISKLENAVNGGEAKLSEKESLHKL 743 (1199)
Q Consensus 665 ~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~-~~L~l~~l~~~~~~~~~~l~~~~~L~~L 743 (1199)
+|+++.|.+ +.+|.-+..++.+..+..+++-. +..++... .+ -.+....+.. .....+..+.+ .|
T Consensus 118 ~LdlS~N~f---~~~Pl~i~~lt~~~~~~~s~N~~-----~~~lg~~~-ik~~~l~~n~l~~---~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 118 YLDLSFNHF---GPIPLVIEVLTAEEELAASNNEK-----IQRLGQTS-IKKLDLRLNVLGG---SFLIDIYNLTH--QL 183 (1081)
T ss_pred ccccchhcc---CCCchhHHhhhHHHHHhhhcchh-----hhhhcccc-chhhhhhhhhccc---chhcchhhhhe--ee
Confidence 999999965 67788888888888888776511 11112111 10 0111111111 11111122222 35
Q ss_pred EEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCC
Q 000983 744 VFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSS 823 (1199)
Q Consensus 744 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~ 823 (1199)
+|+.|... ...+..+++|+.|+...+....+- ...++|+.|+.+.|.+.....-.--.+
T Consensus 184 dLr~N~~~----------------~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~~~p~p~n 242 (1081)
T KOG0618|consen 184 DLRYNEME----------------VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLDVHPVPLN 242 (1081)
T ss_pred ecccchhh----------------hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeecccccccc
Confidence 55544322 112334445555554433322211 224566666666666553332222345
Q ss_pred cCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCC---cCCCcCeEEEecccccccCCCCCchheeeeecccccc
Q 000983 824 LRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELE 900 (1199)
Q Consensus 824 L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~ 900 (1199)
|++++++++.....+.++..+.+++.+...+|.. ..+|. .+.+|+.|.+..| .++.+|..
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~--------------- 305 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPF--------------- 305 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCc---------------
Confidence 6666666664444333344555555555555543 22332 1222333222221 11111110
Q ss_pred chhccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCcEEEccccccCCCCCccc---ccccceeee
Q 000983 901 NWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNSEF---SQRLQLLAL 977 (1199)
Q Consensus 901 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~~~---~~~L~~L~l 977 (1199)
...+. .+++|++..|. +..+|...+ ..+|+.|+.
T Consensus 306 ----------------------le~~~--------------------sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 306 ----------------------LEGLK--------------------SLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred ----------------------ccccc--------------------eeeeeeehhcc-ccccchHHHhhhhHHHHHHhh
Confidence 01122 33556666655 334444321 134666666
Q ss_pred cCCCCCcccc-CCCCCCCCCEEeecCCCCCC-CCCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCC
Q 000983 978 EGCPDGTLVR-AIPETSSLNFLILSKISNLD-SFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKL 1055 (1199)
Q Consensus 978 ~~~~~~~~~~-~l~~l~sL~~L~L~~n~~l~-~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l 1055 (1199)
+.|.....+. .=..+..|+.|.+.+|...+ .+|.+.++++|+.|+|++|. |+++|. ..+.++..|++|++|||. |
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpa-s~~~kle~LeeL~LSGNk-L 419 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPA-SKLRKLEELEELNLSGNK-L 419 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCH-HHHhchHHhHHHhcccch-h
Confidence 6666443332 11234678889999998776 45667888999999999988 888886 578899999999999965 8
Q ss_pred CcCCCCCc-cCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCC-CCCC-CCcCeEEccCCcchHHhhh
Q 000983 1056 ETLPDEGL-PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPE-DGLP-ENLQHLVIQNCPLLTQQCR 1132 (1199)
Q Consensus 1056 ~~l~~~~~-~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~-~~l~-~sL~~L~i~~c~~L~~~~~ 1132 (1199)
+.+|.... ...|++|...+|. +..+|. +..++.|+.+|++.| +|+.+-. ..+| ++|++|+++|++.+--
T Consensus 420 ~~Lp~tva~~~~L~tL~ahsN~-l~~fPe---~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~--- 491 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHSNQ-LLSFPE---LAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVF--- 491 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcCCc-eeechh---hhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccccc---
Confidence 88885322 2788888888765 778885 889999999999977 6665432 2466 8999999999986321
Q ss_pred cCCCCCCCCCcccccCceEECce
Q 000983 1133 DGEAEGPEWPKIKDIPDLEIDFI 1155 (1199)
Q Consensus 1133 ~~~~~g~~~~~i~~l~~l~i~~~ 1155 (1199)
+-+..+...++...+++-+
T Consensus 492 ----d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 492 ----DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ----chhhhHHhhhhhheecccC
Confidence 2233445566666666554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.8e-25 Score=238.26 Aligned_cols=353 Identities=19% Similarity=0.157 Sum_probs=198.7
Q ss_pred ccEEecCCCCCccc-CcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccc
Q 000983 593 LRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1199)
Q Consensus 593 Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 671 (1199)
-+.||+++|.+.++ +..|.++++|+.+++..|.++.+|....-..+|+.|+|.+|.+...-.+.+..++.||.|||+.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 45588888877754 34567788888888888888888777667777888888777644444456677777777777777
Q ss_pred cccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCC
Q 000983 672 FWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNR 751 (1199)
Q Consensus 672 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 751 (1199)
.++.+.. ..+..-.++ ++|+|+.|..+
T Consensus 160 ~is~i~~--~sfp~~~ni---------------------------------------------------~~L~La~N~It 186 (873)
T KOG4194|consen 160 LISEIPK--PSFPAKVNI---------------------------------------------------KKLNLASNRIT 186 (873)
T ss_pred hhhcccC--CCCCCCCCc---------------------------------------------------eEEeecccccc
Confidence 5432211 112222334 44444444333
Q ss_pred CCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEe
Q 000983 752 DSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNI 829 (1199)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L 829 (1199)
.... ..|..+.+|..|.|+.|..+.+|...+ ..+++|+.|+|..|.+.... .|.+|++|+.|.|
T Consensus 187 ~l~~-------------~~F~~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 187 TLET-------------GHFDSLNSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred cccc-------------ccccccchheeeecccCcccccCHHHh-hhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 2111 234455688888888888888887654 56889999999888766553 8889999999999
Q ss_pred cCCCCceecC-CCCCcccccccccCCCCCCCcCCCcC---CCcCeEEEecccccccCCCCCchheeeeeccccccchhcc
Q 000983 830 KGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPECM---PNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNER 905 (1199)
Q Consensus 830 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~---~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~ 905 (1199)
..|..-..-. .+..+..++.|+|..|+....-..++ ..|+.|+++... +
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I-------------------------- 305 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-I-------------------------- 305 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-h--------------------------
Confidence 8875433221 33446666666666665432211222 222222222100 0
Q ss_pred ccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCcEEEccccccCCCCCc--ccccccceeeecCCCC-
Q 000983 906 CLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCPD- 982 (1199)
Q Consensus 906 ~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~--~~~~~L~~L~l~~~~~- 982 (1199)
.+...=.-+.|++ |+.|+++.|.. ..+++. ..+..|++|+|++|..
T Consensus 306 ---------------------~rih~d~Wsftqk---------L~~LdLs~N~i-~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 306 ---------------------QRIHIDSWSFTQK---------LKELDLSSNRI-TRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred ---------------------heeecchhhhccc---------ceeEecccccc-ccCChhHHHHHHHhhhhcccccchH
Confidence 0000000111222 25555555543 223332 2346666666666662
Q ss_pred CccccCCCCCCCCCEEeecCCCCCCCCCC----CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcC
Q 000983 983 GTLVRAIPETSSLNFLILSKISNLDSFPR----WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETL 1058 (1199)
Q Consensus 983 ~~~~~~l~~l~sL~~L~L~~n~~l~~~~~----~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l 1058 (1199)
......|..+++|+.|+|++|.+...+.+ |..|++|+.|.+.+|+ +..++. ..|.+|++|++|++.+|. +.++
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~k-rAfsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPK-RAFSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecch-hhhccCcccceecCCCCc-ceee
Confidence 22233455566666666666665443332 3456666666666655 555554 456666666666666655 3333
Q ss_pred CCC-CccCCcceEEec
Q 000983 1059 PDE-GLPTSLKCLIIA 1073 (1199)
Q Consensus 1059 ~~~-~~~~sL~~L~l~ 1073 (1199)
... .-+..|++|.+.
T Consensus 432 q~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 432 QPNAFEPMELKELVMN 447 (873)
T ss_pred cccccccchhhhhhhc
Confidence 222 222455555443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=6.2e-22 Score=257.04 Aligned_cols=138 Identities=23% Similarity=0.321 Sum_probs=108.6
Q ss_pred cccCCCCccEEecccCC-CcccchhhhHHHHhccC-CcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhc
Q 000983 557 VVENSKKLRTFLVPSFG-EHLKDFGRALDKIFHQL-KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSIC 634 (1199)
Q Consensus 557 ~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 634 (1199)
.|.++++|+.|.+.... ...+.....++..|..+ ..||+|++.++.+..+|..+ ...+|+.|+|++|.+..+|..+.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence 36788889988875211 00111111122334444 56999999999999999988 57999999999999999999999
Q ss_pred ccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEec
Q 000983 635 NLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 635 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~ 698 (1199)
.+++|++|+|++|..+..+| .+..+++|++|++++|. .+..+|..++++++|+.|++.+|.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~--~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS--SLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC--CccccchhhhccCCCCEEeCCCCC
Confidence 99999999999988788888 58899999999999884 357889999999999999887653
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.3e-23 Score=225.38 Aligned_cols=384 Identities=20% Similarity=0.170 Sum_probs=263.4
Q ss_pred CCceeEEEEEeccCCCCccccccC--CCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCc
Q 000983 537 SPETRHVSLLCKHVEKPALSVVEN--SKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELK 614 (1199)
Q Consensus 537 ~~~~r~lsl~~~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~ 614 (1199)
+...+-+....++++.+..+.+.+ .+..++|.+. .|.+.++-...|.++++|+.+++..|.++.+|...+...
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldls-----nNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLS-----NNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG 125 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeecc-----ccccccCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence 334444555555555544333333 2456678776 566777777889999999999999999999999888888
Q ss_pred cccEEeccCCCccccc-hhhcccCcccEEecCCCCcccccch-hhccccccceeecccccccccccCCCCcCCccccCcc
Q 000983 615 LLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNL 692 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L 692 (1199)
||+.|+|.+|.|..+- +++.-++-|++|||+.|. +..+|. ++..-.++++|+|++|.++.++. ..+..+.+|-+|
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~--~~F~~lnsL~tl 202 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLET--GHFDSLNSLLTL 202 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccccccccc--ccccccchheee
Confidence 9999999999999874 578999999999999987 666664 45566799999999998876644 457778888888
Q ss_pred CeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccC
Q 000983 693 HVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQ 772 (1199)
Q Consensus 693 ~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (1199)
.++.+ ..+...+..+ +.+++|+.|+|..|...... .-.|+
T Consensus 203 kLsrN-rittLp~r~F--------------------------k~L~~L~~LdLnrN~irive-------------~ltFq 242 (873)
T KOG4194|consen 203 KLSRN-RITTLPQRSF--------------------------KRLPKLESLDLNRNRIRIVE-------------GLTFQ 242 (873)
T ss_pred ecccC-cccccCHHHh--------------------------hhcchhhhhhccccceeeeh-------------hhhhc
Confidence 88764 3333333333 34455666666655443211 12466
Q ss_pred CCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCcee-cCCCCCcccccc
Q 000983 773 PHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEK-WPNDEDCRFLGR 849 (1199)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~L~~ 849 (1199)
.+++|+.|.+..|....+.+-.+ -.+.+++.|+|+.|...... .+-+|.+|+.|+|++|..... +..++.++.|+.
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~F-y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAF-YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred CchhhhhhhhhhcCcccccCcce-eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee
Confidence 77888888888776666655443 34788899999988877665 667888899999998865432 334566777777
Q ss_pred cccCCCCCCCcCCCcCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccc
Q 000983 850 LKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTL 929 (1199)
Q Consensus 850 L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L 929 (1199)
|+|++|....--+.+|..| ..|
T Consensus 322 LdLs~N~i~~l~~~sf~~L----------------------------------------------------------~~L 343 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVL----------------------------------------------------------SQL 343 (873)
T ss_pred EeccccccccCChhHHHHH----------------------------------------------------------HHh
Confidence 7777775433222222211 111
Q ss_pred cEEEecCCCCCCCCCCCCCCCcEEEccccccCCCCCc--ccccccceeeecCCCC----CccccCCCCCCCCCEEeecCC
Q 000983 930 LEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCPD----GTLVRAIPETSSLNFLILSKI 1003 (1199)
Q Consensus 930 ~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~--~~~~~L~~L~l~~~~~----~~~~~~l~~l~sL~~L~L~~n 1003 (1199)
+.|.+++|.. ..+... .++.+|+.|+|++|.. ......|.++++|+.|.+.+|
T Consensus 344 --------------------e~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 344 --------------------EELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred --------------------hhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 2333344331 112111 3457888888888862 223346778999999999999
Q ss_pred CCCCCCCC--CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCC
Q 000983 1004 SNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGC 1052 (1199)
Q Consensus 1004 ~~l~~~~~--~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c 1052 (1199)
+ +.++|. |..+++|+.|+|.+|. +.++.. ..|..+ .|++|.+..-
T Consensus 403 q-lk~I~krAfsgl~~LE~LdL~~Na-iaSIq~-nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 403 Q-LKSIPKRAFSGLEALEHLDLGDNA-IASIQP-NAFEPM-ELKELVMNSS 449 (873)
T ss_pred e-eeecchhhhccCcccceecCCCCc-ceeecc-cccccc-hhhhhhhccc
Confidence 7 555664 7999999999999999 444543 577777 8999988763
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=6.5e-26 Score=234.56 Aligned_cols=442 Identities=22% Similarity=0.273 Sum_probs=289.1
Q ss_pred eeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEE
Q 000983 540 TRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYL 619 (1199)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L 619 (1199)
...+.++.+.....+. .+.....+..+.+. .+.+..+ +.....+..|+.|+.++|.+..+|++++.+..|..|
T Consensus 70 l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs-----~n~ls~l-p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPA-AIGELEALKSLNVS-----HNKLSEL-PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred eeEEEeccchhhhCCH-HHHHHHHHHHhhcc-----cchHhhc-cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 3445566666555442 24445555555554 3444443 445667889999999999999999999999999999
Q ss_pred eccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecc
Q 000983 620 DLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGS 699 (1199)
Q Consensus 620 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 699 (1199)
+..+|+|..+|+.++++..|..|++.+|. +..+|+...+++.|++||...|- ++.+|+.++.|.+|.-|++..+..
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~---L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL---LETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh---hhcCChhhcchhhhHHHHhhhccc
Confidence 99999999999999999999999999988 67777777779999999998884 478999999999999998876421
Q ss_pred cCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHh-hccCCCCCCc
Q 000983 700 KSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL-EDLQPHPNLE 778 (1199)
Q Consensus 700 ~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~ 778 (1199)
. .+ ..+..+..|..|++..|... .++ +.+..++++.
T Consensus 219 ~---------~l--------------------Pef~gcs~L~Elh~g~N~i~--------------~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 219 R---------FL--------------------PEFPGCSLLKELHVGENQIE--------------MLPAEHLKHLNSLL 255 (565)
T ss_pred c---------cC--------------------CCCCccHHHHHHHhcccHHH--------------hhHHHHhcccccce
Confidence 1 11 12334445555555544322 111 2344678889
Q ss_pred EEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCceecCCC---CCcccccccc---
Q 000983 779 ELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPND---EDCRFLGRLK--- 851 (1199)
Q Consensus 779 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~---~~~~~L~~L~--- 851 (1199)
.|++..|...++|..+ .-+.+|.+|++++|.+.... .+|++ +|+.|-+.||+.-+.-..+ +...-|++|.
T Consensus 256 vLDLRdNklke~Pde~--clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDEI--CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred eeeccccccccCchHH--HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence 9999988888999887 55888999999999888777 88898 8999999998743221111 0011122221
Q ss_pred ----cCCCCCCC----c-CCCcCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCccccc
Q 000983 852 ----ISNCPRLN----E-LPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLL 922 (1199)
Q Consensus 852 ----l~~~~~l~----~-~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 922 (1199)
++.-..-. + .+..|+.-.
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~~~~----------------------------------------------------- 359 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFPDIY----------------------------------------------------- 359 (565)
T ss_pred ccCCCCCCcccccccCCCCCCcccchh-----------------------------------------------------
Confidence 11100000 0 000111100
Q ss_pred ccccccccEEEecCCCCCCCCCCCC-------CCCcEEEccccccCCCCCc-cccccc-ceeeecCCCCCccccCCCCCC
Q 000983 923 LHSFQTLLEMKAINCPKLRGLPQIF-------APQKLEISGCDLLSTLPNS-EFSQRL-QLLALEGCPDGTLVRAIPETS 993 (1199)
Q Consensus 923 ~~~~~~L~~L~l~~c~~L~~l~~~~-------~l~~L~l~~~~~~~~~p~~-~~~~~L-~~L~l~~~~~~~~~~~l~~l~ 993 (1199)
.....+.|.+++ ..++.+|... -.+.+++++|.. ..+|.. ..+..+ ..+.+++|...-.+..+..++
T Consensus 360 --~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~ 435 (565)
T KOG0472|consen 360 --AIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ 435 (565)
T ss_pred --hhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh
Confidence 001111111111 1222222110 124456666653 334433 223333 334455555555566677888
Q ss_pred CCCEEeecCCCCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCcc--CCcceE
Q 000983 994 SLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCL 1070 (1199)
Q Consensus 994 sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L 1070 (1199)
+|..|++++|. +.++|. ++.+..|+.|+++.|. ...+| ..+..+..|+.+ ++.++.+..++..++. .+|..|
T Consensus 436 kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP--~~~y~lq~lEtl-las~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 436 KLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNR-FRMLP--ECLYELQTLETL-LASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred cceeeecccch-hhhcchhhhhhhhhheecccccc-cccch--HHHhhHHHHHHH-HhccccccccChHHhhhhhhccee
Confidence 99999998885 556664 7788889999999986 44555 233333344444 4444668888776554 889999
Q ss_pred EeccCCCCcccCCCCCCCCCCCCCceeecCCCC
Q 000983 1071 IIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPL 1103 (1199)
Q Consensus 1071 ~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~ 1103 (1199)
|+.+|. +..+|+ .++++++|++|.++++|.
T Consensus 511 DL~nNd-lq~IPp--~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 511 DLQNND-LQQIPP--ILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccCCCc-hhhCCh--hhccccceeEEEecCCcc
Confidence 998865 889999 999999999999999974
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=5.5e-24 Score=243.25 Aligned_cols=418 Identities=24% Similarity=0.278 Sum_probs=242.5
Q ss_pred ccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccC
Q 000983 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1199)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1199)
..+.=+|.+|.+. .+.. ...+..+..+..|+.|+++.|.|..+|.+++++.+|+||+|.+|.+..+|.++..++
T Consensus 41 ~~~~v~L~~l~ls-----nn~~-~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLS-----NNQI-SSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELK 114 (1081)
T ss_pred hhheeeeEEeecc-----cccc-ccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhh
Confidence 3334447777776 2222 223445677888999999999999999999999999999999999999999999999
Q ss_pred cccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCc
Q 000983 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGK 717 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~ 717 (1199)
+|++||+++|. .+..|..+..++.+..+..++| ..+..++ .+. ++.+++.. +...+..+.++..++. ...
T Consensus 115 nl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N--~~~~~lg----~~~-ik~~~l~~-n~l~~~~~~~i~~l~~-~ld 184 (1081)
T KOG0618|consen 115 NLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNN--EKIQRLG----QTS-IKKLDLRL-NVLGGSFLIDIYNLTH-QLD 184 (1081)
T ss_pred cccccccchhc-cCCCchhHHhhhHHHHHhhhcc--hhhhhhc----ccc-chhhhhhh-hhcccchhcchhhhhe-eee
Confidence 99999999987 6778888888888888888877 2222222 111 33333322 1112222223333322 001
Q ss_pred eeeCCccccccccccccccccc--------------------cceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCC
Q 000983 718 LHISKLENAVNGGEAKLSEKES--------------------LHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNL 777 (1199)
Q Consensus 718 L~l~~l~~~~~~~~~~l~~~~~--------------------L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 777 (1199)
|.-+... ...+.++.. ++.|+.+.|.... ...-.-+.+|
T Consensus 185 Lr~N~~~------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~---------------~~~~p~p~nl 243 (1081)
T KOG0618|consen 185 LRYNEME------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT---------------LDVHPVPLNL 243 (1081)
T ss_pred cccchhh------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCccee---------------eccccccccc
Confidence 1111000 111222222 2223222221110 0111123577
Q ss_pred cEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCceecC-CCCCcccccccccCCC
Q 000983 778 EELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLKISNC 855 (1199)
Q Consensus 778 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~ 855 (1199)
+.++++.+....+|.|+ +.+.+|+.|...+|.++..+ .+....+|+.|.+..|. ++.++ .......|++|++..|
T Consensus 244 ~~~dis~n~l~~lp~wi--~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLPEWI--GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeeecchhhhhcchHHH--HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 88888877777788887 56788888888887776555 55566677777777663 33333 3333556666665555
Q ss_pred CCCCcCCCcCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEec
Q 000983 856 PRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAI 935 (1199)
Q Consensus 856 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~ 935 (1199)
.. ..+|..+ +..+.. +|..+..+
T Consensus 321 ~L-~~lp~~~--l~v~~~------------------------------------------------------~l~~ln~s 343 (1081)
T KOG0618|consen 321 NL-PSLPDNF--LAVLNA------------------------------------------------------SLNTLNVS 343 (1081)
T ss_pred cc-cccchHH--HhhhhH------------------------------------------------------HHHHHhhh
Confidence 32 2222200 000000 00000000
Q ss_pred CCCCCCCCC-----CCCCCCcEEEccccccCC-CCCcccccccceeeecCCCCCccc-cCCCCCCCCCEEeecCCCCCCC
Q 000983 936 NCPKLRGLP-----QIFAPQKLEISGCDLLST-LPNSEFSQRLQLLALEGCPDGTLV-RAIPETSSLNFLILSKISNLDS 1008 (1199)
Q Consensus 936 ~c~~L~~l~-----~~~~l~~L~l~~~~~~~~-~p~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~sL~~L~L~~n~~l~~ 1008 (1199)
|.++..+| ....|+.|.+.+|..... +|....+++|+.|+|++|...++| ..+.++..|+.|+||+|. ++.
T Consensus 344 -~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~ 421 (1081)
T KOG0618|consen 344 -SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTT 421 (1081)
T ss_pred -hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhh
Confidence 01111111 011234555666654433 455566678888888888765555 345677788888888886 444
Q ss_pred CCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCcc-CCcceEEeccCCCC
Q 000983 1009 FPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP-TSLKCLIIASCSGL 1078 (1199)
Q Consensus 1009 ~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~-~sL~~L~l~~c~~L 1078 (1199)
+|. ...++.|++|...+|. +..+| .+..++.|+.+|++.|+.-...-....| ++|++||++||..+
T Consensus 422 Lp~tva~~~~L~tL~ahsN~-l~~fP---e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQ-LLSFP---ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCc-eeech---hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 554 4677778888877776 56666 5677888888888876633333333455 78888888888753
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.2e-23 Score=228.34 Aligned_cols=183 Identities=19% Similarity=0.216 Sum_probs=138.7
Q ss_pred hhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcc-cccchhhcc
Q 000983 581 RALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWI-MELPKDLAN 659 (1199)
Q Consensus 581 ~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l-~~lp~~i~~ 659 (1199)
..+|.....|..+++|.|..+.+..+|+.++.|.+|+.|++++|++..+...++.|+.|+.++++.|++- .-+|..|..
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 3345567789999999999999999999999999999999999999999889999999999999988743 568999999
Q ss_pred ccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccc
Q 000983 660 LVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKES 739 (1199)
Q Consensus 660 L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~ 739 (1199)
|..|..|||+.|.+ ..+|.++..-+++-.|++++++..+...
T Consensus 102 l~dLt~lDLShNqL---~EvP~~LE~AKn~iVLNLS~N~IetIPn----------------------------------- 143 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQL---REVPTNLEYAKNSIVLNLSYNNIETIPN----------------------------------- 143 (1255)
T ss_pred cccceeeecchhhh---hhcchhhhhhcCcEEEEcccCccccCCc-----------------------------------
Confidence 99999999999854 6778888877777777777653221100
Q ss_pred cceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--C
Q 000983 740 LHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--S 817 (1199)
Q Consensus 740 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~ 817 (1199)
..+-++..|-.|++++|....+|+.+ ..+.+|++|.|++|.+...- .
T Consensus 144 -----------------------------~lfinLtDLLfLDLS~NrLe~LPPQ~--RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 144 -----------------------------SLFINLTDLLFLDLSNNRLEMLPPQI--RRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred -----------------------------hHHHhhHhHhhhccccchhhhcCHHH--HHHhhhhhhhcCCChhhHHHHhc
Confidence 01123345667788888888888888 56899999999998754432 3
Q ss_pred cCCcCCcCeEEecCC
Q 000983 818 LGQLSSLRVLNIKGM 832 (1199)
Q Consensus 818 l~~l~~L~~L~L~~~ 832 (1199)
+-.+.+|.+|++++.
T Consensus 193 LPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNT 207 (1255)
T ss_pred Cccchhhhhhhcccc
Confidence 444555566666553
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=5.1e-14 Score=168.91 Aligned_cols=253 Identities=26% Similarity=0.259 Sum_probs=126.2
Q ss_pred CcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCC
Q 000983 777 LEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCP 856 (1199)
Q Consensus 777 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 856 (1199)
-..|+++++....+|..+ .++|+.|++.+|.+..... .+++|++|++++|.. ..++. ..+.|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l----~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~L-tsLP~--lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch----hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCcc-CcccC--cccccceeeccCCc
Confidence 344555554445555543 2355666666555444322 135566666655532 22221 12345555555553
Q ss_pred CCCcCCCcCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecC
Q 000983 857 RLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAIN 936 (1199)
Q Consensus 857 ~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 936 (1199)
+..+|..+.+|+.|++.++ +++.+|.. +++|+.|++++
T Consensus 274 -L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~----------------------------------------p~~L~~LdLS~ 311 (788)
T PRK15387 274 -LTHLPALPSGLCKLWIFGN-QLTSLPVL----------------------------------------PPGLQELSVSD 311 (788)
T ss_pred -hhhhhhchhhcCEEECcCC-cccccccc----------------------------------------ccccceeECCC
Confidence 2334444445555555443 22222211 12333444433
Q ss_pred CCCCCCCCCC-CCCCcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCCCCC
Q 000983 937 CPKLRGLPQI-FAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNL 1015 (1199)
Q Consensus 937 c~~L~~l~~~-~~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l 1015 (1199)
+ .++.+|.. ..+..|++++|.. ..+|. ...+|++|++++|.....|.. ..+|+.|++++|.+. .+|.. .
T Consensus 312 N-~L~~Lp~lp~~L~~L~Ls~N~L-~~LP~--lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l--~ 381 (788)
T PRK15387 312 N-QLASLPALPSELCKLWAYNNQL-TSLPT--LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL--P 381 (788)
T ss_pred C-ccccCCCCcccccccccccCcc-ccccc--cccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc--c
Confidence 2 23333221 1334555555543 23442 234566666666664444332 245666666666543 34432 2
Q ss_pred CccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCCCCCCc
Q 000983 1016 PGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKD 1095 (1199)
Q Consensus 1016 ~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~ 1095 (1199)
.+|+.|++++|. ++.+|. ..++|+.|++++|. +..+|. ++.+|+.|++++|. ++.+|. .+.++++|+.
T Consensus 382 ~~L~~LdLs~N~-Lt~LP~-----l~s~L~~LdLS~N~-LssIP~--l~~~L~~L~Ls~Nq-Lt~LP~--sl~~L~~L~~ 449 (788)
T PRK15387 382 SGLKELIVSGNR-LTSLPV-----LPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-LTRLPE--SLIHLSSETT 449 (788)
T ss_pred cccceEEecCCc-ccCCCC-----cccCCCEEEccCCc-CCCCCc--chhhhhhhhhccCc-ccccCh--HHhhccCCCe
Confidence 456677776665 555552 12456667777754 555553 34566667776654 566665 5666677777
Q ss_pred eeecCCC
Q 000983 1096 FYIEDCP 1102 (1199)
Q Consensus 1096 L~i~~c~ 1102 (1199)
|++++|+
T Consensus 450 LdLs~N~ 456 (788)
T PRK15387 450 VNLEGNP 456 (788)
T ss_pred EECCCCC
Confidence 7777764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=3.9e-14 Score=169.90 Aligned_cols=76 Identities=24% Similarity=0.248 Sum_probs=61.7
Q ss_pred CcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeeccc
Q 000983 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 670 (1199)
..-.+|+|+++.++.+|+.+. .+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence 557789999999999999876 4899999999999999863 5789999999987 5567743 36788888888
Q ss_pred ccccc
Q 000983 671 MFWFK 675 (1199)
Q Consensus 671 n~~~~ 675 (1199)
|.+..
T Consensus 272 N~L~~ 276 (788)
T PRK15387 272 NPLTH 276 (788)
T ss_pred Cchhh
Confidence 86543
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=9.9e-16 Score=159.70 Aligned_cols=265 Identities=20% Similarity=0.129 Sum_probs=171.4
Q ss_pred ccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccEEeccC-CCccccch-hhcccCcccEEecCCCCcccc
Q 000983 576 LKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSR-TEIKVLPN-SICNLYNLQTLKLIGCIWIME 652 (1199)
Q Consensus 576 ~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ 652 (1199)
.|.+..+++++|+.+++||.|||++|+|+.| |+.|.++..|-.|-+.+ |+|+.+|+ .|++|..||.|.+.-|+..-.
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 5778889999999999999999999999955 88899999988887777 89999998 699999999999998886666
Q ss_pred cchhhccccccceeecccccccccccCCC-CcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccc----
Q 000983 653 LPKDLANLVKLRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAV---- 727 (1199)
Q Consensus 653 lp~~i~~L~~L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~---- 727 (1199)
....+..|++|..|.+.+|.+ ..++. .+..+.+++++.+..+.....+.+..+..--... .....+..-+.
T Consensus 156 r~~al~dL~~l~lLslyDn~~---q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~-~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKI---QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN-PIETSGARCVSPYRL 231 (498)
T ss_pred hHHHHHHhhhcchhcccchhh---hhhccccccchhccchHhhhcCccccccccchhhhHHhhc-hhhcccceecchHHH
Confidence 677889999999999999854 55555 5788889999988765533333222211100000 00000000000
Q ss_pred -ccccccccc---cccccee--EEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCC-CcccccCccC
Q 000983 728 -NGGEAKLSE---KESLHKL--VFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQ 800 (1199)
Q Consensus 728 -~~~~~~l~~---~~~L~~L--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~ 800 (1199)
......+.. ..+++.+ .+....... ...--..+..+++|++|+++||..+.+ +.|| ..+.
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d-----------~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF--e~~a 298 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPD-----------SICPAKCFKKLPNLRKLNLSNNKITRIEDGAF--EGAA 298 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcC-----------CcChHHHHhhcccceEeccCCCccchhhhhhh--cchh
Confidence 000000000 0011111 000000000 000012366778888888888776665 4456 4578
Q ss_pred ceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecC-CCCCcccccccccCCCCC
Q 000983 801 NLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLKISNCPR 857 (1199)
Q Consensus 801 ~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 857 (1199)
.++.|.|..|++.... .|.++..|+.|+|.+|.....-+ .+..+.+|..+.+-.|+.
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 8888888888766555 67888888888888886655433 456666777777666654
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=2e-14 Score=150.11 Aligned_cols=276 Identities=18% Similarity=0.160 Sum_probs=193.4
Q ss_pred CCCceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCC-CCCcccCcc-cccC
Q 000983 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSS-STLTVLPDS-VEEL 613 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~l~~lp~~-i~~l 613 (1199)
.|+.+..|.+..|.+..++..+|..+++||.|.+. .|.+..+-+++|.+++.|..|-+-+ |+|+.+|+. |++|
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-----~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-----KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceeccc-----ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 57788899999999999999999999999999997 7888899999999999988877766 899999964 8999
Q ss_pred ccccEEeccCCCccccc-hhhcccCcccEEecCCCCcccccch-hhccccccceeecccccccccccC----------CC
Q 000983 614 KLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFWFKCSTL----------PA 681 (1199)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~n~~~~~~~l----------p~ 681 (1199)
..|+.|.+.-|++.-++ ..|..|++|..|.+..|. +..++. .+..+..++++.+..|.+...=.+ |.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 99999999999999765 579999999999999987 667776 788999999999988753221111 11
Q ss_pred CcCCccccCccCeEEecccCcCChhhhc-CCCCCCCceeeCCccccc-cccccccccccccceeEEEecCCCCCCCCCCC
Q 000983 682 GIGKLTNLHNLHVFRVGSKSGYRIEELK-ELPYLTGKLHISKLENAV-NGGEAKLSEKESLHKLVFEWSNNRDSSPQSQD 759 (1199)
Q Consensus 682 ~i~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~~L~l~~l~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 759 (1199)
..+.........+.++. ........+. .+..+...+. ...+.. ......+..+++|+.|+|+.|.......
T Consensus 219 etsgarc~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~--~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~---- 291 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKR-INQEDARKFLCSLESLPSRLS--SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED---- 291 (498)
T ss_pred hcccceecchHHHHHHH-hcccchhhhhhhHHhHHHhhc--cccCcCCcChHHHHhhcccceEeccCCCccchhhh----
Confidence 11111111111111110 0000000010 0111110000 001011 1112237888999999999987653222
Q ss_pred CccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCC
Q 000983 760 VSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLE 834 (1199)
Q Consensus 760 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~ 834 (1199)
..|.....++.|.+..|....+..-++ ..+.+|+.|+|.+|+++... .|..+.+|..|+|-.|+.
T Consensus 292 ---------~aFe~~a~l~eL~L~~N~l~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 292 ---------GAFEGAAELQELYLTRNKLEFVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ---------hhhcchhhhhhhhcCcchHHHHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 356667889999999877666655544 56899999999999988776 788899999999987753
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=4.1e-11 Score=156.18 Aligned_cols=276 Identities=18% Similarity=0.188 Sum_probs=171.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC-CChHHHHHHHHHhcccCCCC-------------CCc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-YDLPRILKGMIEFHSKMEQS-------------TSS 262 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~-------------~~~ 262 (1199)
..+++.|+|++|.||||++.++.+. ++.++|+++... -+...+...++..+...... ..+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 4779999999999999999998752 236899999644 45555666666655321110 012
Q ss_pred HHHHHHHHHHHhC--CCeEEEEEecCCCcCccChH-HHHHhhhCCCCCcEEEEecCCchhh---hhhcCCCceeCC----
Q 000983 263 ISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKWE-PLQQLLKQGHKGSRVLVTSRTARVS---QIMGIRSPYLLE---- 332 (1199)
Q Consensus 263 ~~~l~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~iivTtR~~~v~---~~~~~~~~~~l~---- 332 (1199)
...+...+...+. +.+++|||||+...+..... .+...++....+.++|||||...-. .........++.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 2233333333332 67899999999665433333 3444445456677898999974211 111112244555
Q ss_pred CCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCC-HHHHHHHHhhhccccccCC
Q 000983 333 YLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDD-VNKWRKILSSDIWELEEGS 411 (1199)
Q Consensus 333 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~-~~~w~~~l~~~~~~~~~~~ 411 (1199)
+|+.+|+.++|.......- -.+...+|.+.|+|.|+++..++..+..... .... . +.+..
T Consensus 185 ~f~~~e~~~ll~~~~~~~~----------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~----~~~~~-- 245 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPI----------EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS---A----RRLAG-- 245 (903)
T ss_pred CCCHHHHHHHHHhccCCCC----------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh---h----HhhcC--
Confidence 8999999999987654321 1355678999999999999999877754321 1110 0 00100
Q ss_pred CCCCCcccchh-hcccCCChhhHHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHhccC
Q 000983 412 SNGPHILPPLK-LSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSF 490 (1199)
Q Consensus 412 ~~~~~i~~~l~-~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sl 490 (1199)
.....+...+. -.++.||+..+..+...|+++ .++.+ +. ..+.. .+.+...+++|.+.++
T Consensus 246 ~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~-----~~l~~----------~~~~~~~L~~l~~~~l 306 (903)
T PRK04841 246 INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LI-----VRVTG----------EENGQMRLEELERQGL 306 (903)
T ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HH-----HHHcC----------CCcHHHHHHHHHHCCC
Confidence 01123444332 247899999999999999996 23432 22 11211 2234678999999999
Q ss_pred cccccCCCcceEEehHHHHHHHHHhc
Q 000983 491 FQSSNIDDKVKYQMHDLFHDLAQFVS 516 (1199)
Q Consensus 491 l~~~~~~~~~~~~mhdlv~~~a~~i~ 516 (1199)
+.....+....|++|++++++.+.-.
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHH
Confidence 75432223357889999999998764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=2.2e-14 Score=132.03 Aligned_cols=102 Identities=31% Similarity=0.414 Sum_probs=58.9
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
.+.++..|.||+|+++.+|+.|..+.+|+.|++++|+|+++|.+++.|++|+.|++.-|+ +..+|.+|+.++-|+.|||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 355556666666666666666666666666666666666666666666666666666554 4555666666666666666
Q ss_pred ccccccccccCCCCcCCccccCcc
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNL 692 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L 692 (1199)
..|++.. ..+|..+-.|+.|+.|
T Consensus 110 tynnl~e-~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 110 TYNNLNE-NSLPGNFFYMTTLRAL 132 (264)
T ss_pred ccccccc-ccCCcchhHHHHHHHH
Confidence 5554421 3344433333333333
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=2.5e-14 Score=131.63 Aligned_cols=106 Identities=31% Similarity=0.460 Sum_probs=58.6
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcc-cccchhhccccccce
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWI-MELPKDLANLVKLRN 665 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~ 665 (1199)
+..+++|++|++++|.|+.+|.+++.++.||.|++.-|++..+|..||.++-|++|||++|... ..+|..|..++.|+.
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555422 345555555555555
Q ss_pred eecccccccccccCCCCcCCccccCccCeE
Q 000983 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVF 695 (1199)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~ 695 (1199)
|+|++|.+ ..+|+.++++++||.|.+.
T Consensus 132 lyl~dndf---e~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 132 LYLGDNDF---EILPPDVGKLTNLQILSLR 158 (264)
T ss_pred HHhcCCCc---ccCChhhhhhcceeEEeec
Confidence 55555533 3455555555555555443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=2.8e-12 Score=155.39 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=71.7
Q ss_pred CcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeeccc
Q 000983 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 670 (1199)
.+..+|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 467889999999999988764 589999999999999998765 589999999887 567887654 4789999998
Q ss_pred ccccccccCCCCcCCccccCccCeEE
Q 000983 671 MFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 671 n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
|.+ ..+|..+. ++|+.|++++
T Consensus 251 N~L---~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 251 NRI---TELPERLP--SALQSLDLFH 271 (754)
T ss_pred Ccc---CcCChhHh--CCCCEEECcC
Confidence 855 45565543 3566665543
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=8.6e-12 Score=151.24 Aligned_cols=74 Identities=28% Similarity=0.394 Sum_probs=37.7
Q ss_pred cccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccc
Q 000983 592 YLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 671 (1199)
+|++|+|++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++|. +..+|..+. .+|++|++++|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC
Confidence 45555555555555554432 245555555555555555443 345555555544 334454432 34555555555
Q ss_pred c
Q 000983 672 F 672 (1199)
Q Consensus 672 ~ 672 (1199)
.
T Consensus 294 ~ 294 (754)
T PRK15370 294 S 294 (754)
T ss_pred c
Confidence 3
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=5.2e-12 Score=155.54 Aligned_cols=124 Identities=34% Similarity=0.389 Sum_probs=97.0
Q ss_pred cCCcccEEecCCCC--CcccCcc-cccCccccEEeccCC-CccccchhhcccCcccEEecCCCCcccccchhhccccccc
Q 000983 589 QLKYLRLLDLSSST--LTVLPDS-VEELKLLRYLDLSRT-EIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLR 664 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~--l~~lp~~-i~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 664 (1199)
..+.|++|-+.+|. +..++.. |..+++||+|||++| .+..+|++|++|.+||+|+++++. +..+|.++.+|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhh
Confidence 34579999999886 6666654 778999999999987 678999999999999999999977 789999999999999
Q ss_pred eeecccccccccccCCCCcCCccccCccCeEEec-ccCcCChhhhcCCCCCC
Q 000983 665 NLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG-SKSGYRIEELKELPYLT 715 (1199)
Q Consensus 665 ~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~ 715 (1199)
+|++..+.. ...+|.....|++|++|.+.... ..+...+.++.++.+|.
T Consensus 622 ~Lnl~~~~~--l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 622 YLNLEVTGR--LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred eeccccccc--cccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 999998743 23445555669999999988754 33344555555555554
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=1.8e-09 Score=125.78 Aligned_cols=304 Identities=16% Similarity=0.117 Sum_probs=177.4
Q ss_pred cCCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
.+..++||+++++++...+...- .......+.|+|++|+|||++++.++++.......-..++|.+....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 34679999999999999885432 1123345679999999999999999985332221234466666666677888899
Q ss_pred HHHhcccCCC--CCCcHHHHHHHHHHHhC--CCeEEEEEecCCCcC-ccChHHHHHhhh--CCCCCcE--EEEecCCchh
Q 000983 249 MIEFHSKMEQ--STSSISLLETRLLEFLT--GQRFLLVLDDVWNED-YRKWEPLQQLLK--QGHKGSR--VLVTSRTARV 319 (1199)
Q Consensus 249 i~~~~~~~~~--~~~~~~~l~~~l~~~l~--~k~~LlVlDdvw~~~-~~~~~~l~~~l~--~~~~gs~--iivTtR~~~v 319 (1199)
+..++..... ...+.+.+...+.+.++ ++..+||||+++... ....+.+...+. ....+++ ||.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 9988865221 13345666666766664 456899999997532 112233333332 1123333 5666665443
Q ss_pred hhhhc-------CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh--c--
Q 000983 320 SQIMG-------IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL--R-- 388 (1199)
Q Consensus 320 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l--~-- 388 (1199)
..... ....+.+.+++.++..+++..++....... ...+..++.+++......|..+.|+.++-.+. +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~-~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPG-VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccC-CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 32211 124678999999999999988763221100 01223334444444444566778877765432 1
Q ss_pred c-C--CCHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhccC-C-CCcccCHHHHHHH--HHHcc
Q 000983 389 K-Y--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIF-P-KSYAFDKAEMVKF--WMAEA 461 (1199)
Q Consensus 389 ~-~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~f-p-~~~~i~~~~li~~--W~aeg 461 (1199)
. . -+.+....+++... .....-.+..||.+.|..+..++.. . +...+...++... .+++.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 1 14455655555320 1123446789999988776655422 2 1133555555433 23322
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHHhccCcccc
Q 000983 462 LIQSRGGGRQEREEEIGIEYFDELLGRSFFQSS 494 (1199)
Q Consensus 462 ~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 494 (1199)
+-.. ..+ ...-..|+.+|.+.++|...
T Consensus 332 ~~~~-----~~~-~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYE-----PRT-HTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCC-----cCc-HHHHHHHHHHHHhcCCeEEE
Confidence 2111 111 34456799999999999864
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=1e-08 Score=118.04 Aligned_cols=302 Identities=15% Similarity=0.092 Sum_probs=170.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc-ccc---ceeEEEEecCCCChHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-EHF---ESRMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~~~ 246 (1199)
+.++||+.++++|..++.... .......+.|+|++|+|||+++++++++.... ... -..+|+.+....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 478999999999999987522 11234568899999999999999999842111 111 134677777766778888
Q ss_pred HHHHHhcc---cCCCC-CCcHHHHHHHHHHHh--CCCeEEEEEecCCCcCccChHHHHHhhhC----CC--CCcEEEEec
Q 000983 247 KGMIEFHS---KMEQS-TSSISLLETRLLEFL--TGQRFLLVLDDVWNEDYRKWEPLQQLLKQ----GH--KGSRVLVTS 314 (1199)
Q Consensus 247 ~~i~~~~~---~~~~~-~~~~~~l~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~----~~--~gs~iivTt 314 (1199)
..+++++. ...+. ..+...+...+.+.+ .+++++||||+++......-+.+...+.. .. ....+|++|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99998884 22111 223444555555555 35688999999975421111122222221 11 223455555
Q ss_pred CCchhhhhhc-------CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHHHHh
Q 000983 315 RTARVSQIMG-------IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAGF 386 (1199)
Q Consensus 315 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~ 386 (1199)
........+. ....+.+.+.+.++..+++..++....... ...++..+...+++....|.| .|+.++-.+
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~--~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDG--VLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCC--CCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4433221110 124578999999999999988764211100 022333345556777777888 443333222
Q ss_pred h----cc-C--CCHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhccC--CCCcccCHHHHHHHH
Q 000983 387 L----RK-Y--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIF--PKSYAFDKAEMVKFW 457 (1199)
Q Consensus 387 l----~~-~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~f--p~~~~i~~~~li~~W 457 (1199)
. .. . -+.+....+.+... .....-+...||.+.|..+..++.. .++..+...++...+
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 1 11 1 23344444443210 1122345678998888766655421 133446666666643
Q ss_pred H--HccccccCCCCCCccHHHHHHHHHHHHHhccCccccc
Q 000983 458 M--AEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN 495 (1199)
Q Consensus 458 ~--aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 495 (1199)
- ++.+-..+ .. ......++..|...+++....
T Consensus 318 ~~~~~~~~~~~-----~~-~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 318 KEVCEDIGVDP-----LT-QRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHhcCCCC-----Cc-HHHHHHHHHHHHhcCCeEEEE
Confidence 2 22211111 11 566788899999999998653
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=5e-09 Score=115.00 Aligned_cols=182 Identities=21% Similarity=0.181 Sum_probs=115.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHH----HH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLL----EF 273 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~----~~ 273 (1199)
..++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..+...++..... .+...+...+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 457889999999999999999985332 111 12333 333457778888888887654332 22222223333 22
Q ss_pred -hCCCeEEEEEecCCCcCccChHHHHHhhhC---CCCCcEEEEecCCchhhhhhc----------CCCceeCCCCChhHH
Q 000983 274 -LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ---GHKGSRVLVTSRTARVSQIMG----------IRSPYLLEYLPEDQC 339 (1199)
Q Consensus 274 -l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~---~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~ 339 (1199)
..+++.+||+||+|..+...++.+...... ......|++|... .....+. ....+++.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 267889999999988765566666543321 1222345555543 2221111 123578999999999
Q ss_pred HHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 340 WSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 340 ~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
.+++...+...+... ...-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~---~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRD---APVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCC---CCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987765332110 112235788899999999999999988876
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=7.7e-10 Score=119.05 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=100.7
Q ss_pred cccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH---
Q 000983 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM--- 249 (1199)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i--- 249 (1199)
|+||+.++++|.+++..+. .+.+.|+|+.|+|||+|++++.+. .+..-..++|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhH-HHHHHHH
Confidence 6899999999999987643 568889999999999999999983 322112344554444432222 1221
Q ss_pred -----------HHhcccCC------CC----CCcHHHHHHHHHHHhCCCeEEEEEecCCCcC------ccChHHHHHhhh
Q 000983 250 -----------IEFHSKME------QS----TSSISLLETRLLEFLTGQRFLLVLDDVWNED------YRKWEPLQQLLK 302 (1199)
Q Consensus 250 -----------~~~~~~~~------~~----~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~------~~~~~~l~~~l~ 302 (1199)
...+.... .. ......+.+.+.+ .+++.+||+||+.... ..-...+...+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 11111110 01 1222233333332 3446999999995443 011123333333
Q ss_pred C--CCCCcEEEEecCCchhhhh--------hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHh
Q 000983 303 Q--GHKGSRVLVTSRTARVSQI--------MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGK 372 (1199)
Q Consensus 303 ~--~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~ 372 (1199)
. ......+|++.-...+... .+....+.+++++.+++++++...+-.... . +.-++..++|...
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~-----~-~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIK-----L-PFSDEDIEEIYSL 223 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------------HHHHHHHHHH
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhc-----c-cCCHHHHHHHHHH
Confidence 3 2233334444443333322 233345899999999999999987643311 1 1124556899999
Q ss_pred cCCChHHHHH
Q 000983 373 CKGLPLAVKA 382 (1199)
Q Consensus 373 c~glPLai~~ 382 (1199)
+||+|..|..
T Consensus 224 ~gG~P~~l~~ 233 (234)
T PF01637_consen 224 TGGNPRYLQE 233 (234)
T ss_dssp HTT-HHHHHH
T ss_pred hCCCHHHHhc
Confidence 9999988764
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.04 E-value=1.3e-08 Score=118.51 Aligned_cols=289 Identities=22% Similarity=0.221 Sum_probs=187.6
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHhcccCCCC
Q 000983 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKMEQS 259 (1199)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~ 259 (1199)
.++++.|... ...+.+.|..++|.|||||+.+... +. ..=..+.|.+....- +......-++..+....+.
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4556666543 3589999999999999999999975 22 223467899988654 5667777777766533222
Q ss_pred -------------CCcHHHHHHHHHHHhC--CCeEEEEEecCCCcCccCh-HHHHHhhhCCCCCcEEEEecCCchhhhh-
Q 000983 260 -------------TSSISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKW-EPLQQLLKQGHKGSRVLVTSRTARVSQI- 322 (1199)
Q Consensus 260 -------------~~~~~~l~~~l~~~l~--~k~~LlVlDdvw~~~~~~~-~~l~~~l~~~~~gs~iivTtR~~~v~~~- 322 (1199)
..+...+...+...+. .++..+||||-.-...... ..+...+.....+-..|||||+..-...
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 2233444455555443 5689999999865433334 3444445566778899999998643221
Q ss_pred --hcCCCceeC----CCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHH
Q 000983 323 --MGIRSPYLL----EYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKW 396 (1199)
Q Consensus 323 --~~~~~~~~l----~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w 396 (1199)
--.....++ =.++.+|+-++|...... +-.+.-.+.+.+..+|-+-|+..++=.++.+.+.+.-
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l----------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~ 246 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL----------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQS 246 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCC----------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH
Confidence 111122333 257899999999876522 1224557789999999999999998888744343333
Q ss_pred HHHHh---hhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCCCCcc
Q 000983 397 RKILS---SDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQER 473 (1199)
Q Consensus 397 ~~~l~---~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~ 473 (1199)
...+. +..++. ...=-++.||+++|..++-+|+++.= -+.|+..- .
T Consensus 247 ~~~LsG~~~~l~dY------------L~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L---------t------ 295 (894)
T COG2909 247 LRGLSGAASHLSDY------------LVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL---------T------ 295 (894)
T ss_pred hhhccchHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH---------h------
Confidence 22222 111111 11224678999999999999998641 13333221 1
Q ss_pred HHHHHHHHHHHHHhccCcccccCCCcceEEehHHHHHHHHHhcCC
Q 000983 474 EEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVSSP 518 (1199)
Q Consensus 474 ~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~i~~~ 518 (1199)
.++.|...+++|.+++++-..-.+...+|+.|.++.||.+.--..
T Consensus 296 g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 155677889999999998755445668999999999998765443
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.97 E-value=2.9e-09 Score=119.49 Aligned_cols=280 Identities=15% Similarity=0.165 Sum_probs=145.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+|+|++..++.+..++..... .......+.|+|++|+||||||+.+++. ....+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 5799999999998877753210 1233556789999999999999999984 32222 111111 111111222222
Q ss_pred HhcccCCCC-CCcH----HHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhhhhc-
Q 000983 251 EFHSKMEQS-TSSI----SLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMG- 324 (1199)
Q Consensus 251 ~~~~~~~~~-~~~~----~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~- 324 (1199)
..+....-- .+++ ....+.+...+.+.+..+|+|+..+.. .+...+ .+.+-|..|+|...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHH
Confidence 222110000 0000 011222333333334444444432110 000001 12345666777544433221
Q ss_pred -CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhhh
Q 000983 325 -IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKILSSD 403 (1199)
Q Consensus 325 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~ 403 (1199)
....+++++++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..+...+ ..|.......
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-------~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~ 236 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-------EIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG 236 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-------CcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC
Confidence 1346889999999999999988765432 1224678899999999995444444332 1221111000
Q ss_pred ccccccCCCCCCCcccchhhcccCCChhhHHHHH-HhccCCCCcccCHHHHHHHHHHccccccCCCCCCccHHHHHHHHH
Q 000983 404 IWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFS-LCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYF 482 (1199)
Q Consensus 404 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~~ 482 (1199)
.... ..-......+...|..|++..+.-+. ....|+.+ .+..+.+.... ... .+.+++.+
T Consensus 237 --~I~~--~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~~--------~~~~~~~~ 297 (328)
T PRK00080 237 --VITK--EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GEE--------RDTIEDVY 297 (328)
T ss_pred --CCCH--HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CCC--------cchHHHHh
Confidence 0000 00011223456678889888777775 77777765 45555443222 111 34455566
Q ss_pred H-HHHhccCcccccCC
Q 000983 483 D-ELLGRSFFQSSNID 497 (1199)
Q Consensus 483 ~-~L~~~sll~~~~~~ 497 (1199)
+ .|++.+|++....+
T Consensus 298 e~~Li~~~li~~~~~g 313 (328)
T PRK00080 298 EPYLIQQGFIQRTPRG 313 (328)
T ss_pred hHHHHHcCCcccCCch
Confidence 6 89999999865433
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=2.9e-08 Score=111.00 Aligned_cols=272 Identities=17% Similarity=0.152 Sum_probs=146.3
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+|||++..++.+..++..... .......+.++|++|+|||+||+.+++. ....|. .+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---EeccchhcCchh-HHHHH
Confidence 4699999999999888864221 1123456789999999999999999984 222221 111111111111 12222
Q ss_pred HhcccCCCC-CCcH----HHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhhhhc-
Q 000983 251 EFHSKMEQS-TSSI----SLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMG- 324 (1199)
Q Consensus 251 ~~~~~~~~~-~~~~----~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~- 324 (1199)
..+....-- -+++ ...++.+...+.+.+..+|+|+.... ..| ...+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 222111000 0000 11223344444455555555554322 111 1111 22455666777654433221
Q ss_pred -CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhc------cC--CCHHH
Q 000983 325 -IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLR------KY--DDVNK 395 (1199)
Q Consensus 325 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~------~~--~~~~~ 395 (1199)
....+++++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+. .. -+.+.
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-------~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~ 221 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-------EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDI 221 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-------CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 1346789999999999999988764322 11245678899999999966554444321 00 01111
Q ss_pred HHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHH-HhccCCCCcccCHHHHHHHHHHccccccCCCCCCccH
Q 000983 396 WRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFS-LCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQERE 474 (1199)
Q Consensus 396 w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~ 474 (1199)
...++ ..+...|..|+++.+..+. ..+.++.+ .+..+.+.... |- .
T Consensus 222 v~~~l------------------~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~-----------~ 268 (305)
T TIGR00635 222 ALKAL------------------EMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE-----------D 268 (305)
T ss_pred HHHHH------------------HHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC-----------C
Confidence 11111 2256678899988877665 55767544 34443333221 11 0
Q ss_pred HHHHHHHHH-HHHhccCcccccCC
Q 000983 475 EEIGIEYFD-ELLGRSFFQSSNID 497 (1199)
Q Consensus 475 ~~~~~~~~~-~L~~~sll~~~~~~ 497 (1199)
...++..++ .|++++||+....+
T Consensus 269 ~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 269 ADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred cchHHHhhhHHHHHcCCcccCCch
Confidence 345667778 69999999755433
No 32
>PF05729 NACHT: NACHT domain
Probab=98.89 E-value=1.1e-08 Score=103.12 Aligned_cols=144 Identities=24% Similarity=0.253 Sum_probs=88.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccc----cceeEEEEecCCCChH---HHHHHHHHhcccCCCCCCcHHHHHHHHH
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREH----FESRMWVCVTVDYDLP---RILKGMIEFHSKMEQSTSSISLLETRLL 271 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~l~~~l~ 271 (1199)
+++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+..+..... .........+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHHH
Confidence 47899999999999999999985333332 3455666665443322 23333333332211 11111111111
Q ss_pred HHhCCCeEEEEEecCCCcCcc-------ChHH-HHHhhhC-CCCCcEEEEecCCchh---hhhhcCCCceeCCCCChhHH
Q 000983 272 EFLTGQRFLLVLDDVWNEDYR-------KWEP-LQQLLKQ-GHKGSRVLVTSRTARV---SQIMGIRSPYLLEYLPEDQC 339 (1199)
Q Consensus 272 ~~l~~k~~LlVlDdvw~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 339 (1199)
-+.++++||+|+++..... .+.. +...++. ..++.+||||+|.... .........+++.++++++.
T Consensus 78 --~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 78 --EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred --HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2578999999999653321 1222 3333443 3678999999998765 33344446799999999999
Q ss_pred HHHHHHHh
Q 000983 340 WSIFKKIA 347 (1199)
Q Consensus 340 ~~lf~~~a 347 (1199)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99987653
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=5.2e-10 Score=126.78 Aligned_cols=87 Identities=25% Similarity=0.219 Sum_probs=40.1
Q ss_pred hccCCcccEEecCCCCCc-----ccCcccccCccccEEeccCCCccc-------cchhhcccCcccEEecCCCCcccccc
Q 000983 587 FHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIKV-------LPNSICNLYNLQTLKLIGCIWIMELP 654 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~lp 654 (1199)
|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+....+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 334444555555555542 233344444445555555544331 22334445555555555554433334
Q ss_pred hhhccccc---cceeecccccc
Q 000983 655 KDLANLVK---LRNLELEEMFW 673 (1199)
Q Consensus 655 ~~i~~L~~---L~~L~l~~n~~ 673 (1199)
..+..+.+ |++|++++|.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHHHhccCcccEEEeeCCcc
Confidence 44433333 55555555543
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.84 E-value=3e-10 Score=128.72 Aligned_cols=203 Identities=22% Similarity=0.166 Sum_probs=120.3
Q ss_pred EEecCCCCCc--ccCcccccCccccEEeccCCCcc-----ccchhhcccCcccEEecCCCCcc------cccchhhcccc
Q 000983 595 LLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCIWI------MELPKDLANLV 661 (1199)
Q Consensus 595 ~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l------~~lp~~i~~L~ 661 (1199)
.|+|.++.++ ..+..+..+.+|++|+++++.+. .++..+...++|++|+++++... ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777765 45556777888999999999983 56778888999999999988643 23455677889
Q ss_pred ccceeecccccccccccCCCCcCCcc---ccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccc-
Q 000983 662 KLRNLELEEMFWFKCSTLPAGIGKLT---NLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEK- 737 (1199)
Q Consensus 662 ~L~~L~l~~n~~~~~~~lp~~i~~l~---~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~- 737 (1199)
+|++|++++|.+.. ..+..+..+. +|++|+++++.. ++.....+ ...+...
T Consensus 82 ~L~~L~l~~~~~~~--~~~~~~~~l~~~~~L~~L~ls~~~~-~~~~~~~l----------------------~~~l~~~~ 136 (319)
T cd00116 82 GLQELDLSDNALGP--DGCGVLESLLRSSSLQELKLNNNGL-GDRGLRLL----------------------AKGLKDLP 136 (319)
T ss_pred ceeEEEccCCCCCh--hHHHHHHHHhccCcccEEEeeCCcc-chHHHHHH----------------------HHHHHhCC
Confidence 99999999987642 2233333333 488888876532 11111100 0111222
Q ss_pred cccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCC-----CCcccccCccCceeEEEEeCccC
Q 000983 738 ESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNS-----LPQWMRDGRLQNLVSLTLKGCTN 812 (1199)
Q Consensus 738 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~ 812 (1199)
.+|+.|+++.|.... .....+...+..+++|+.|+++++.... ++..+ ..+++|+.|++++|.+
T Consensus 137 ~~L~~L~L~~n~l~~---------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~i 205 (319)
T cd00116 137 PALEKLVLGRNRLEG---------ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL--KANCNLEVLDLNNNGL 205 (319)
T ss_pred CCceEEEcCCCcCCc---------hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH--HhCCCCCEEeccCCcc
Confidence 456666666654431 1122233444455667777776544321 11111 2235677777777655
Q ss_pred cccc------CcCCcCCcCeEEecCCC
Q 000983 813 CRIL------SLGQLSSLRVLNIKGML 833 (1199)
Q Consensus 813 ~~~~------~l~~l~~L~~L~L~~~~ 833 (1199)
.... .+..+++|++|++++|.
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 4321 34456677777777764
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.77 E-value=9.6e-08 Score=102.16 Aligned_cols=179 Identities=18% Similarity=0.216 Sum_probs=106.2
Q ss_pred ccCCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 168 IDTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
++...++|....+.+++ .. +.+.-.-.||++|+||||||+.++. .....| ..++-..+-.+-++
T Consensus 27 vGQ~HLlg~~~~lrr~v---~~------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRRAV---EA------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHHHH---hc------CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHH
Confidence 34444555544444443 32 2355666999999999999999997 344344 34444443333334
Q ss_pred HHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE--ecCCchh---hhh
Q 000983 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV--TSRTARV---SQI 322 (1199)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~~ 322 (1199)
++++... .....+++.+|++|.|..-+..+-+.+... -..|.-|+| ||.++.. ...
T Consensus 91 ~i~e~a~----------------~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 91 EIIEEAR----------------KNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHHHH----------------HHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHH
Confidence 4433221 122358999999999987665555554443 456777776 6776543 122
Q ss_pred hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 323 MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 323 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
.....++++++|+.++-.+++.+.+......-......-.++...-++..++|---++-
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 34457899999999999999988443222111000111123456678888888764433
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.75 E-value=7.7e-08 Score=101.51 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=98.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
.+.+.|+|.+|+|||+||+++++. .......+.|+++.... ... ..+.+.++ +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~---------------------~~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS---------------------PAVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh---------------------HHHHhhcc-c
Confidence 356889999999999999999984 32233455666653110 000 01111122 2
Q ss_pred eEEEEEecCCCcC-ccChH-HHHHhhhCC-CCCcEEEE-ecCC---------chhhhhhcCCCceeCCCCChhHHHHHHH
Q 000983 278 RFLLVLDDVWNED-YRKWE-PLQQLLKQG-HKGSRVLV-TSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1199)
Q Consensus 278 ~~LlVlDdvw~~~-~~~~~-~l~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1199)
.-+||+||+|... ...|+ .+...+... ..|..+|| |++. +++...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998642 23454 344444322 24555654 4543 4566666777789999999999999999
Q ss_pred HHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
+.+...+-. --+++..-|++++.|..-++..+-..+
T Consensus 172 ~~a~~~~l~-------l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIE-------LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCC-------CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 988754321 125677889999988876665555444
No 37
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.67 E-value=6e-07 Score=105.66 Aligned_cols=214 Identities=13% Similarity=0.101 Sum_probs=130.3
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc---ccccc--eeEEEEecCCCChHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV---REHFE--SRMWVCVTVDYDLPR 244 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~ 244 (1199)
++.++||++|+++|...|...-. +.....++.|+|++|.|||++++.|.+.... ....+ .+++|.+....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45788999999999888865431 1233467889999999999999999873211 11222 246677766667788
Q ss_pred HHHHHHHhcccCCCC-CCcHHHHHHHHHHHhC---CCeEEEEEecCCCcCccChHHHHHhhhC-CCCCcEEEE--ecCC-
Q 000983 245 ILKGMIEFHSKMEQS-TSSISLLETRLLEFLT---GQRFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLV--TSRT- 316 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~l~---~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR~- 316 (1199)
++..|.+++....+. ......+..++...+. +...+||||+|+......-+.|...+.+ ...+++|+| +|..
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 888888888543332 2233334444544442 2245899999964322222334444432 234566555 3332
Q ss_pred -------chhhhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhc
Q 000983 317 -------ARVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLR 388 (1199)
Q Consensus 317 -------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~ 388 (1199)
+.+...++. ..+...+.+.++-.+++..++...... ..+..++-+|+.++..-|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gV---LdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEI---IDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 222222222 246679999999999999888643211 13445556666666666667778777766654
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.5e-08 Score=118.26 Aligned_cols=107 Identities=37% Similarity=0.464 Sum_probs=92.8
Q ss_pred hccCCcccEEecCCCCCcccCcccccCc-cccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccce
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELK-LLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 665 (1199)
...++.+..|++.++.+..+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 3455889999999999999999888885 9999999999999999999999999999999998 7888888889999999
Q ss_pred eecccccccccccCCCCcCCccccCccCeEEe
Q 000983 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
|++++|.+ ..+|..++.+..|++|.+..+
T Consensus 191 L~ls~N~i---~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNKI---SDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCcc---ccCchhhhhhhhhhhhhhcCC
Confidence 99999955 566776667777888887664
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=2.3e-10 Score=121.49 Aligned_cols=151 Identities=17% Similarity=0.324 Sum_probs=82.3
Q ss_pred CCCCCEEeecCCCCCCCCCCC---CCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCc---cC
Q 000983 992 TSSLNFLILSKISNLDSFPRW---PNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL---PT 1065 (1199)
Q Consensus 992 l~sL~~L~L~~n~~l~~~~~~---~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~---~~ 1065 (1199)
+..|++|..++|...+..+-+ .+.++|+.|.+..|..++...-...-.+.+.|+.+++.+|.....-.-..+ .+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 344555555555443332221 344556666666665544433222234455666666666553322100001 15
Q ss_pred CcceEEeccCCCCccc-----CCCCCCCCCCCCCceeecCCCCCCCCCCC--CCCCCcCeEEccCCcchHHhhhcCCCCC
Q 000983 1066 SLKCLIIASCSGLKSL-----GPRGTLKSLNSLKDFYIEDCPLLQSFPED--GLPENLQHLVIQNCPLLTQQCRDGEAEG 1138 (1199)
Q Consensus 1066 sL~~L~l~~c~~L~~l-----p~~~~l~~l~sL~~L~i~~c~~l~~lp~~--~l~~sL~~L~i~~c~~L~~~~~~~~~~g 1138 (1199)
.|+.|.++.|..+++. .. .-..+..|+.+.+++||.++.--.+ ...++|+.+++.+|....+..-+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~--~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~----- 445 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSS--SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS----- 445 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhh--ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH-----
Confidence 6677777766655554 22 3345667888888888877653322 23468888999999887663222
Q ss_pred CCCCcccccCceEE
Q 000983 1139 PEWPKIKDIPDLEI 1152 (1199)
Q Consensus 1139 ~~~~~i~~l~~l~i 1152 (1199)
+...|+|++++
T Consensus 446 ---~~~~~lp~i~v 456 (483)
T KOG4341|consen 446 ---RFATHLPNIKV 456 (483)
T ss_pred ---HHHhhCcccee
Confidence 23467777765
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=4.7e-07 Score=104.89 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=105.9
Q ss_pred CccccchhhHHH---HHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKER---ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
+++||.+..+.. +..++.... ...+.++|++|+||||+|+.+++. .... |+.++.......-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~------~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR------LSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC------CceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 357787766554 666664432 556778999999999999999983 2222 333332211111112
Q ss_pred HHHHhcccCCCCCCcHHHHHHHHHH-HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE--ecCCch--hh-h
Q 000983 248 GMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV--TSRTAR--VS-Q 321 (1199)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~--v~-~ 321 (1199)
.+++. ... ...+++.+|++|++|..+....+.+...+.. |..++| ||.+.. +. .
T Consensus 79 ~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22211 111 1146788999999987665555666655542 444544 344432 11 1
Q ss_pred hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHh
Q 000983 322 IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGF 386 (1199)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 386 (1199)
.......+.+.+++.++.++++.+.+..... . ..+-..+..+.|++.|+|.+..+..+...
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~---~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-G---LVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-C---CCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1223367899999999999999886543211 0 00122456778999999999766554443
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=1.8e-08 Score=99.24 Aligned_cols=82 Identities=38% Similarity=0.416 Sum_probs=21.3
Q ss_pred CCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhh-cccCcccEEecCCCCcccccc--hhhcccccccee
Q 000983 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSI-CNLYNLQTLKLIGCIWIMELP--KDLANLVKLRNL 666 (1199)
Q Consensus 590 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L 666 (1199)
+.+|++|+|++|.|+.++ .+..+++|+.|++++|.|+.+++.+ ..+++|++|++++|.+ ..+- ..+..+++|++|
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCccee
Confidence 344445555555544443 2444455555555555554443333 2344555555544442 1111 223344445555
Q ss_pred ecccccc
Q 000983 667 ELEEMFW 673 (1199)
Q Consensus 667 ~l~~n~~ 673 (1199)
++.+|.+
T Consensus 119 ~L~~NPv 125 (175)
T PF14580_consen 119 SLEGNPV 125 (175)
T ss_dssp E-TT-GG
T ss_pred eccCCcc
Confidence 5544433
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=3.4e-09 Score=116.78 Aligned_cols=107 Identities=28% Similarity=0.472 Sum_probs=88.8
Q ss_pred HhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccce
Q 000983 586 IFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1199)
Q Consensus 586 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 665 (1199)
.++.|..|..|.|..|.+..+|..++++..|.||+|+.|++..+|..++.|+ |++|-+++|+ +..+|..|+-+..|.+
T Consensus 93 ~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 93 EACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHH
Confidence 3566777888888888888888889999999999999999998988888886 8888888876 7888888888888999
Q ss_pred eecccccccccccCCCCcCCccccCccCeEEe
Q 000983 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
||.+.|. +..+|..++.+.+|+.|.+..+
T Consensus 171 ld~s~ne---i~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 171 LDVSKNE---IQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred hhhhhhh---hhhchHHhhhHHHHHHHHHhhh
Confidence 9988884 4667888888888888877553
No 43
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=2.2e-08 Score=98.61 Aligned_cols=123 Identities=27% Similarity=0.310 Sum_probs=47.4
Q ss_pred cCCcccEEecCCCCCcccCcccc-cCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhh-cccccccee
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVE-ELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDL-ANLVKLRNL 666 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L 666 (1199)
+...++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|. +..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 4556899999999998874 466 5889999999999999885 58889999999999988 55666555 468999999
Q ss_pred ecccccccccccCCCCcCCccccCccCeEEecccC--cCChhhhcCCCCCC
Q 000983 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKS--GYRIEELKELPYLT 715 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~ 715 (1199)
++++|.+..+..+ ..+..+++|+.|++.++.... .+...-+..+++|+
T Consensus 94 ~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 94 YLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp E-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred ECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 9999988766554 456778888888887765332 22333455566555
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.57 E-value=9.1e-07 Score=94.25 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=102.7
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhccc
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK 255 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 255 (1199)
.+..++.+.+++... ....+.|+|.+|+|||+||+.+++. ........+++.++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------
Confidence 344566777665432 3557889999999999999999984 222233445555443211 00
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCcc-C-hHHHHHhhhC-CCCCcEEEEecCCch---------hhhhh
Q 000983 256 MEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR-K-WEPLQQLLKQ-GHKGSRVLVTSRTAR---------VSQIM 323 (1199)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~-~-~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~ 323 (1199)
. .+.+.+.+ .-+||+||++..... . .+.+...+.. ...+.+||+||+... +...+
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 01111222 238999999754432 2 3445554432 123457999888532 22233
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
.....+++.++++++...++...+-..+. +--.+..+.|++.+.|.|..+.-+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-------~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-------QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33457899999999999998876532221 1124566778888999998777665443
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=5.3e-09 Score=115.34 Aligned_cols=193 Identities=26% Similarity=0.300 Sum_probs=144.8
Q ss_pred CCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecc
Q 000983 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1199)
Q Consensus 590 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (1199)
+..-...||+.|.+..+|..++.+..|..|.|..|.|..+|+.+++|..|.+|||+.|. +..+|..++.|+ |+.|-++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEe
Confidence 33445679999999999999999999999999999999999999999999999999998 788999998875 8999999
Q ss_pred cccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecC
Q 000983 670 EMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSN 749 (1199)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~ 749 (1199)
+| +++.+|..++-+..|..|+.+.|...+ .+..++.+ .+|+.|.+..|.
T Consensus 152 NN---kl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l--------------------------~slr~l~vrRn~ 200 (722)
T KOG0532|consen 152 NN---KLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYL--------------------------TSLRDLNVRRNH 200 (722)
T ss_pred cC---ccccCCcccccchhHHHhhhhhhhhhh--chHHhhhH--------------------------HHHHHHHHhhhh
Confidence 98 457889999988999999988764321 22223333 344444443332
Q ss_pred CCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc----CcCCcCCcC
Q 000983 750 NRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL----SLGQLSSLR 825 (1199)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~----~l~~l~~L~ 825 (1199)
.. .+++.+. .-.|..|++++|....+|..| ..+..|++|.|.+|.+.... .-|..---|
T Consensus 201 l~--------------~lp~El~-~LpLi~lDfScNkis~iPv~f--r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 201 LE--------------DLPEELC-SLPLIRLDFSCNKISYLPVDF--RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFK 263 (722)
T ss_pred hh--------------hCCHHHh-CCceeeeecccCceeecchhh--hhhhhheeeeeccCCCCCChHHHHhccceeeee
Confidence 22 2233344 225788999988888999888 56899999999999877655 234444456
Q ss_pred eEEecCC
Q 000983 826 VLNIKGM 832 (1199)
Q Consensus 826 ~L~L~~~ 832 (1199)
+|+..-|
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 6666655
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.51 E-value=2.7e-07 Score=88.68 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=80.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccc---cccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVR---EHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...+++.++.......+...+.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 5688999999999999999999842110 0034567999998889999999999999877665566677777777777
Q ss_pred CCCe-EEEEEecCCCc-CccChHHHHHhhhCCCCCcEEEEecCC
Q 000983 275 TGQR-FLLVLDDVWNE-DYRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1199)
Q Consensus 275 ~~k~-~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1199)
...+ .+||+||+..- +...++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6554 59999999654 3333344433333 566777777664
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=4.5e-07 Score=100.07 Aligned_cols=159 Identities=23% Similarity=0.391 Sum_probs=76.3
Q ss_pred cccccEEEecCCCCCCCCCCCC-CCCcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCC
Q 000983 926 FQTLLEMKAINCPKLRGLPQIF-APQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKIS 1004 (1199)
Q Consensus 926 ~~~L~~L~l~~c~~L~~l~~~~-~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~ 1004 (1199)
+.++..|.+.+| .++++|..+ +++.|.+++|..+..+|.. .. .+|++|++++|.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~-LP-----------------------~nLe~L~Ls~Cs 105 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGS-IP-----------------------EGLEKLTVCHCP 105 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCch-hh-----------------------hhhhheEccCcc
Confidence 355666666666 555555443 3555555555554444431 12 345555555554
Q ss_pred CCCCCCCCCCCCccceEEEccCC--CCCCCcccccCCCCCCcceEEecCCCCC--CcCCCCCccCCcceEEeccCCCCcc
Q 000983 1005 NLDSFPRWPNLPGLKALYIRDCK--DLVSLSGEGALQSLTSLNLLSIRGCPKL--ETLPDEGLPTSLKCLIIASCSGLKS 1080 (1199)
Q Consensus 1005 ~l~~~~~~~~l~~L~~L~l~~c~--~L~~l~~~~~l~~l~~L~~L~l~~c~~l--~~l~~~~~~~sL~~L~l~~c~~L~~ 1080 (1199)
.+..+|. +|+.|+++.+. .+..+| ++|+.|.+.+++.. ..++ ..+|++|++|+|++|..+ .
T Consensus 106 ~L~sLP~-----sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i-~ 170 (426)
T PRK15386 106 EISGLPE-----SVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNI-I 170 (426)
T ss_pred ccccccc-----ccceEEeCCCCCcccccCc--------chHhheeccccccccccccc-cccCCcccEEEecCCCcc-c
Confidence 3333332 34445544322 122222 24555555432211 1111 135566777777766644 2
Q ss_pred cCCCCCCCCCCCCCceeecCCCCC-CCCCCCCCCCCcCeEEccCCcchHH
Q 000983 1081 LGPRGTLKSLNSLKDFYIEDCPLL-QSFPEDGLPENLQHLVIQNCPLLTQ 1129 (1199)
Q Consensus 1081 lp~~~~l~~l~sL~~L~i~~c~~l-~~lp~~~l~~sL~~L~i~~c~~L~~ 1129 (1199)
+|. .+. .+|+.|.++.+... ..++...+|+++ .|++.+|-.+..
T Consensus 171 LP~--~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 171 LPE--KLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred Ccc--ccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 332 222 46667776654211 234444566666 677777655443
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.50 E-value=8.8e-07 Score=88.80 Aligned_cols=182 Identities=21% Similarity=0.265 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
++|||.+.-++.+.-++.... ...+...-+-+||++|+||||||.-+++ .....|. +++.. ...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C-----------
T ss_pred HHccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhh---------
Confidence 579999888877654443211 0123466778999999999999999998 4444443 22221 111
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC--------CC-----------cEEE
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH--------KG-----------SRVL 311 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~--------~g-----------s~ii 311 (1199)
...++...+.+ + +++-+|++|+++.-+...-+.+..++.++. ++ +-|=
T Consensus 88 -----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 -----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 11122222221 2 245578889998766555566666665431 11 2234
Q ss_pred EecCCchhhhhhcCCC--ceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhc
Q 000983 312 VTSRTARVSQIMGIRS--PYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLR 388 (1199)
Q Consensus 312 vTtR~~~v~~~~~~~~--~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~ 388 (1199)
.|||...+...+.... ..+++..+.+|-.+...+.+..-+ .+-.++.+.+|++++.|-|--..-+-...+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-------i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-------IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--------EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-------CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5888765544443332 347999999999999987765432 233467889999999999965544444443
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=1.9e-07 Score=113.60 Aligned_cols=103 Identities=23% Similarity=0.388 Sum_probs=84.8
Q ss_pred cccEEecCCCCCc-ccCcccccCccccEEeccCCCcc-ccchhhcccCcccEEecCCCCcccccchhhccccccceeecc
Q 000983 592 YLRLLDLSSSTLT-VLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (1199)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++++++|++|||++|.+.+.+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778899999887 78888999999999999999887 788889999999999999998888899999999999999999
Q ss_pred cccccccccCCCCcCCc-cccCccCeEE
Q 000983 670 EMFWFKCSTLPAGIGKL-TNLHNLHVFR 696 (1199)
Q Consensus 670 ~n~~~~~~~lp~~i~~l-~~L~~L~l~~ 696 (1199)
+|.+. +.+|..++.+ .++..+++.+
T Consensus 499 ~N~l~--g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSLS--GRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCccc--ccCChHHhhccccCceEEecC
Confidence 98765 5678777553 3444555444
No 50
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.43 E-value=3.3e-05 Score=93.35 Aligned_cols=203 Identities=20% Similarity=0.201 Sum_probs=123.8
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccc---eeEEEEecCC---CChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE---SRMWVCVTVD---YDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~~---~~~~~ 244 (1199)
+.++|++..+..+...+.... ...+.|+|++|+||||+|+.+++.......+. ..-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 357899999988887775332 45688999999999999999987543333331 2345555321 12222
Q ss_pred HHHHH---------------HHhcccCC----------------CC-CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCcc
Q 000983 245 ILKGM---------------IEFHSKME----------------QS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR 292 (1199)
Q Consensus 245 ~~~~i---------------~~~~~~~~----------------~~-~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~ 292 (1199)
+...+ +...+... ++ ..=....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111000 00 011123577888889999999998888877777
Q ss_pred ChHHHHHhhhCCCCCcEEEE--ecCCchh-hhhh-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHH
Q 000983 293 KWEPLQQLLKQGHKGSRVLV--TSRTARV-SQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGRE 368 (1199)
Q Consensus 293 ~~~~l~~~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~ 368 (1199)
.|+.+...+....+...|++ ||++... ...+ .....+.+.+++.++.++++.+.+-..+.. . -.++.+.
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~----l---s~eal~~ 380 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH----L---AAGVEEL 380 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC----C---CHHHHHH
Confidence 88888877776666555665 6665432 1111 122467889999999999999876532210 1 1345556
Q ss_pred HHHhcCCChHHHHHHHHh
Q 000983 369 IVGKCKGLPLAVKAIAGF 386 (1199)
Q Consensus 369 i~~~c~glPLai~~~~~~ 386 (1199)
|++.+..-+-|+..++.+
T Consensus 381 L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 381 IARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHCCCcHHHHHHHHHHH
Confidence 666665446666666544
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=4.2e-08 Score=99.35 Aligned_cols=106 Identities=29% Similarity=0.281 Sum_probs=53.9
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhcccccccee
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 666 (1199)
.+-.+.+|+|++|+|.|..+-. +..|.+|..||||+|.+..+-..-.+|-|.++|.|++|. +..+ +++.+|.+|..|
T Consensus 303 vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnL 379 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNL 379 (490)
T ss_pred hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheec
Confidence 3344555555555555554432 455555555555555555444444445555555555543 2222 245555555666
Q ss_pred ecccccccccccCCCCcCCccccCccCeEE
Q 000983 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
|+++|++..+..+ .+||+|+.|++|.+.+
T Consensus 380 Dl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 380 DLSSNQIEELDEV-NHIGNLPCLETLRLTG 408 (490)
T ss_pred cccccchhhHHHh-cccccccHHHHHhhcC
Confidence 6665555443333 4555566665555544
No 52
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=2.1e-06 Score=84.72 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=73.2
Q ss_pred ccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhc
Q 000983 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFH 253 (1199)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1199)
+|++..+..+...+.... .+.+.|+|.+|+||||+|+++++... ..-..++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~------~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP------PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 478888888888886532 45788999999999999999998432 222345566655443322211111000
Q ss_pred ccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC------CCCcEEEEecCCc
Q 000983 254 SKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG------HKGSRVLVTSRTA 317 (1199)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~ 317 (1199)
............+..+||+||++.........+...+... ..+.+||+||...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111223456789999999753222333444444432 3677888888864
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=8.4e-06 Score=90.99 Aligned_cols=180 Identities=14% Similarity=0.197 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccc----ccccccceeEEEEe-cCCCChHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEE----RVREHFESRMWVCV-TVDYDLPRI 245 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-~~~~~~~~~ 245 (1199)
.+++|.+.-++.+..++..+. -.+.+.++|+.|+||||+|+.++..- ....|+|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 457898888999999986543 35677899999999999999998731 12345565555442 22222222
Q ss_pred HHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhh-hh-h
Q 000983 246 LKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVS-QI-M 323 (1199)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~-~ 323 (1199)
.+++.+.+... -..+++-++|+|+++..+...+..+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222110 012456677778886666678889999998878889998888765322 11 2
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 383 (1199)
.....+.+.++++++....+.+...+. . .+.++.++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~~---~--------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYNDI---K--------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcCC---C--------HHHHHHHHHHcCCCHHHHHHH
Confidence 233578899999999887776543211 0 234668899999998655433
No 54
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=9.3e-07 Score=95.68 Aligned_cols=298 Identities=17% Similarity=0.143 Sum_probs=186.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..+-+.++|.|||||||++-++.. ++..|....|+.--..+ +...+.-.....++...... +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 467899999999999999999886 56677665555444444 44444444444454433221 122334455557
Q ss_pred CCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhhhhcCCCceeCCCCCh-hHHHHHHHHHhcCCCCCC
Q 000983 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPE-DQCWSIFKKIAFNQGNFS 354 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~ 354 (1199)
++|.++|+||--.. .+.-..+...+-.+...-.|+.|+|..-.. .....+.+..|+. +++.++|...+......-
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998211 011223333444556667899999964322 2345667777764 489999987774332110
Q ss_pred ccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHHhhhccccccCCC----CCCCcccchhhcccCCCh
Q 000983 355 SRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKILSSDIWELEEGSS----NGPHILPPLKLSYDHLPP 430 (1199)
Q Consensus 355 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~----~~~~i~~~l~~sy~~L~~ 430 (1199)
.-.........+|.++..|.|++|..+++..++ ..+.+....+......+..... ......+.+.+||.-|..
T Consensus 163 --~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 163 --WLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred --eecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 022334567889999999999999999999876 3444444444432222221110 123577889999999999
Q ss_pred hhHHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHhccCcccccCCCcceEEehHHHHH
Q 000983 431 FLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHD 510 (1199)
Q Consensus 431 ~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~ 510 (1199)
-.+--|..++.|...|... ...|++-|-.-. .+.-.....+..+++++++...+......|+.-+-++.
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-------~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVD-------VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccc-------cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 9999999999998877654 334544332210 01233445567788888887655444556777777777
Q ss_pred HHHHhcCC
Q 000983 511 LAQFVSSP 518 (1199)
Q Consensus 511 ~a~~i~~~ 518 (1199)
++...-.+
T Consensus 309 YalaeL~r 316 (414)
T COG3903 309 YALAELHR 316 (414)
T ss_pred HHHHHHHh
Confidence 76655433
No 55
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.4e-06 Score=101.81 Aligned_cols=195 Identities=15% Similarity=0.149 Sum_probs=115.8
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
++++|.+.-++.+..++.... -...+.++|++|+||||+|+.+++...-.+.+...+|+|.+... +..-.+...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 468999988888888887643 34567899999999999999998843222223323343322100 000000000
Q ss_pred HhcccCCCCCCcHHHHH---HHHHH-HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecC-Cchhhhhh-c
Q 000983 251 EFHSKMEQSTSSISLLE---TRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSR-TARVSQIM-G 324 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~---~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~ 324 (1199)
..+... .....+.+. ..+.. -..+++-++|+|+++..+...++.+...+........+|++|. ...+.... .
T Consensus 88 ~el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 001100 111222222 22211 1235667999999987666667888888776555556555554 33443222 2
Q ss_pred CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 325 IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
....+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~-------i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGRE-------AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 34578999999999999998877544321 12456788999999988544
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.7e-08 Score=104.85 Aligned_cols=185 Identities=21% Similarity=0.104 Sum_probs=107.4
Q ss_pred cccCccccEEeccCCCccccch--hhcccCcccEEecCCCCcc--cccchhhccccccceeecccccccccccCCCCcCC
Q 000983 610 VEELKLLRYLDLSRTEIKVLPN--SICNLYNLQTLKLIGCIWI--MELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGK 685 (1199)
Q Consensus 610 i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~ 685 (1199)
=.+++.||...|+++.+...+. -...|++++.|||+.|-+. ..+-.-...|++|+.|+++.|.+.....- ..-..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhh
Confidence 4578899999999998887764 6788999999999987532 22333456788999999998865321100 00123
Q ss_pred ccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchH
Q 000983 686 LTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEE 765 (1199)
Q Consensus 686 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 765 (1199)
+++|+.|.+..|+ -........+...++|..|.|..|....... .
T Consensus 196 l~~lK~L~l~~CG--------------------------ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~-------~-- 240 (505)
T KOG3207|consen 196 LSHLKQLVLNSCG--------------------------LSWKDVQWILLTFPSLEVLYLEANEIILIKA-------T-- 240 (505)
T ss_pred hhhhheEEeccCC--------------------------CCHHHHHHHHHhCCcHHHhhhhcccccceec-------c--
Confidence 3444444444332 2222222233445566666666663211100 0
Q ss_pred HHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--C------cCCcCCcCeEEecCCCC
Q 000983 766 RLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--S------LGQLSSLRVLNIKGMLE 834 (1199)
Q Consensus 766 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~------l~~l~~L~~L~L~~~~~ 834 (1199)
...-+..|+.|+|+++..-.++.....+.++.|..|+++.|.+...- + ...+|+|++|++..|+.
T Consensus 241 ----~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 241 ----STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ----hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 11123466777777666555554333356777777777777654433 1 24567777777777743
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=8.9e-06 Score=92.71 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1199)
++++|++..++.+..++..+. .+.+.++|++|+||||+|+.+++... ...+. ..+.++++.-... ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN------LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 568899999999999886543 34577999999999999999987321 11122 1233333321100 00000
Q ss_pred HH------hcccC-CCCCCcHHHHHHHHHHH---h--CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc
Q 000983 250 IE------FHSKM-EQSTSSISLLETRLLEF---L--TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 250 ~~------~~~~~-~~~~~~~~~l~~~l~~~---l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1199)
.+ ..+.. .......+.+...+... . .+.+-+||+||+..........+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 00000 00001122222222211 1 2345589999996554334455666665555567788777542
Q ss_pred -hhhhhh-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 318 -RVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 318 -~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
.+...+ .....+++.+++.++..+.+...+...+.. --.+....+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-------YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHH
Confidence 222222 223567889999999988888876443221 1246677888899887655443
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.1e-08 Score=103.97 Aligned_cols=132 Identities=17% Similarity=0.098 Sum_probs=85.7
Q ss_pred ccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccC
Q 000983 733 KLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTN 812 (1199)
Q Consensus 733 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 812 (1199)
....+.+++.|+|+.|-.. .-..+.....++++|+.|+++.|....+-.......+++|+.|.|+.|.+
T Consensus 141 ~~k~~~~v~~LdLS~NL~~-----------nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl 209 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFH-----------NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL 209 (505)
T ss_pred hhhhCCcceeecchhhhHH-----------hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC
Confidence 3455677888888876433 23345566678899999999866554433333224688999999999977
Q ss_pred cccc---CcCCcCCcCeEEecCCCCce-ecCCCCCcccccccccCCCCCCCcC--CC--cCCCcCeEEEec
Q 000983 813 CRIL---SLGQLSSLRVLNIKGMLELE-KWPNDEDCRFLGRLKISNCPRLNEL--PE--CMPNLTVMKIKK 875 (1199)
Q Consensus 813 ~~~~---~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~--~~--~~~~L~~L~l~~ 875 (1199)
.... .+..+|+|+.|+|..|..+. .......+..|+.|+|++|+.+..- +. .||+|..|.+..
T Consensus 210 s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 210 SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 6433 56688999999999985322 2223345678888888888765432 11 445555544443
No 59
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=9.6e-06 Score=95.65 Aligned_cols=198 Identities=14% Similarity=0.151 Sum_probs=115.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH-
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM- 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i- 249 (1199)
+++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+...-...++. ..+....+-..+...-
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcccHHHHHHhcCCC
Confidence 578999999999999986543 3456679999999999999988873221111100 0000000011110000
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-h
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-M 323 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~ 323 (1199)
.+.+.........++++.+.+... ..++.-++|||+++..+...|..+...+.......++|+||.+. .+... .
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 000000000111222332222221 13455589999998777667888888887666678888777764 33222 2
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAI 383 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 383 (1199)
.....+.++.++.++..+.+.+.+...+. .-..+..+.|++.++|.. -|+..+
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-------~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERI-------AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23357899999999999999887643321 112466778999998855 455443
No 60
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.4e-05 Score=90.93 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
++++|.+.-++.+...+..+. -.+.+.++|+.|+||||+|+.+++...-....... .+....+..++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcCCC
Confidence 468899999999988886543 34577899999999999999998732111100000 0000000011100000
Q ss_pred Hhcc-cCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-h
Q 000983 251 EFHS-KMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-M 323 (1199)
Q Consensus 251 ~~~~-~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~ 323 (1199)
-.+. .........+.+.+.+... ..+++-++|+|++...+...++.+...+.......++|++|.+. .+... .
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 0000 0000011222222211110 12455699999997766556777777777666667777766543 33322 2
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
+....+++.+++.++..+.+...+...+.. -.++.+..|++.++|.|-.+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-------i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESID-------TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 233578999999999998888766443211 11356678999999988543
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.6e-05 Score=89.78 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc---ccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE---HFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
+++||-+.-++.+.+++..+. -.+.+.++|..|+||||+|+.+.+...-.. ... ...-.+... ..-+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~~~PCG~C----~sC~ 85 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-ITAQPCGQC----RACT 85 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CCCCCCccc----HHHH
Confidence 568999999999999997654 345678999999999999999987321100 000 000000000 0001
Q ss_pred HHHH-----hcccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEE-EecCCc
Q 000983 248 GMIE-----FHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL-VTSRTA 317 (1199)
Q Consensus 248 ~i~~-----~~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~ 317 (1199)
.|.. .+.........++++.+.+... ..++.-++|+|+++..+...+..+...+.....+.++| +||...
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 1100 0000000112233333322221 24566699999998777677777777776555556655 455544
Q ss_pred hhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHH
Q 000983 318 RVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1199)
Q Consensus 318 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 383 (1199)
.+... ......+.++.++.++..+.+.+.+...+.. ...+..+.|++.++|.|.-...+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-------~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-------HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44322 2223578999999999999888776433211 11345678999999998644433
No 62
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=4.5e-07 Score=73.10 Aligned_cols=57 Identities=39% Similarity=0.487 Sum_probs=39.3
Q ss_pred cccEEecCCCCCcccCc-ccccCccccEEeccCCCccccch-hhcccCcccEEecCCCC
Q 000983 592 YLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCI 648 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 648 (1199)
+|++|++++|.++.+|. .|.++++|++|++++|.++.+|. .|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56777777777776663 56667777777777777776643 56777777777777664
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.36 E-value=7.3e-07 Score=91.73 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=32.3
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.||||+++++++...|... .....+++.|+|.+|+|||+|.++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999522 2345689999999999999999999984
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=8.4e-08 Score=97.25 Aligned_cols=121 Identities=28% Similarity=0.310 Sum_probs=98.9
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
..+.|..||||+|.|+.+.+++.-++.+|+|++|+|.|..+-. +..|++|+.|||++|. +.++-..-.+|-+.+.|.|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 4567889999999999999999999999999999999988854 8899999999999987 5555555567888999999
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCC
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLT 715 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 715 (1199)
++|.+..+ .++++|-+|..|++.+++...-..+..+++++.|.
T Consensus 360 a~N~iE~L----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 360 AQNKIETL----SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hhhhHhhh----hhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 99976555 67889999999999887765555566666666554
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.35 E-value=2.4e-07 Score=108.08 Aligned_cols=197 Identities=32% Similarity=0.352 Sum_probs=129.5
Q ss_pred cEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccC-cccEEecCCCCcccccchhhccccccceeeccccc
Q 000983 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY-NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMF 672 (1199)
Q Consensus 594 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~ 672 (1199)
..|++..+.+..-+..+..+..+..|++.++.+..+|...+.+. +|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 46788888875555567777899999999999999999999885 99999999988 78888889999999999999996
Q ss_pred ccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCC
Q 000983 673 WFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRD 752 (1199)
Q Consensus 673 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 752 (1199)
+ ..+|...+.+++|+.|++.++.... ++.. ......|+.+.++.|...
T Consensus 175 l---~~l~~~~~~~~~L~~L~ls~N~i~~---------l~~~-------------------~~~~~~L~~l~~~~N~~~- 222 (394)
T COG4886 175 L---SDLPKLLSNLSNLNNLDLSGNKISD---------LPPE-------------------IELLSALEELDLSNNSII- 222 (394)
T ss_pred h---hhhhhhhhhhhhhhheeccCCcccc---------Cchh-------------------hhhhhhhhhhhhcCCcce-
Confidence 5 5667766688899988887643111 1100 011123444444443211
Q ss_pred CCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCCcCeEEecCC
Q 000983 753 SSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGM 832 (1199)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~ 832 (1199)
..+..+..+.++..|.+.++....++..+ +.+++++.|++++|.+.....++.+.+|+.|+++++
T Consensus 223 -------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~--~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 223 -------------ELLSSLSNLKNLSGLELSNNKLEDLPESI--GNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred -------------ecchhhhhcccccccccCCceeeeccchh--ccccccceeccccccccccccccccCccCEEeccCc
Confidence 11123334445555555555544445544 445666666666666655555666666666666666
Q ss_pred CCceec
Q 000983 833 LELEKW 838 (1199)
Q Consensus 833 ~~~~~~ 838 (1199)
......
T Consensus 288 ~~~~~~ 293 (394)
T COG4886 288 SLSNAL 293 (394)
T ss_pred cccccc
Confidence 544433
No 66
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.8e-05 Score=87.08 Aligned_cols=209 Identities=14% Similarity=0.175 Sum_probs=131.9
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccce--eEEEEecCCCChHHHHHHH
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES--RMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i 249 (1199)
.+.+|+++++++...|...-. +....-+.|+|.+|+|||+.++.|.+ ++...... ++.|.+....+..+++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 388999999999888765431 12222388999999999999999998 44433221 6889999999999999999
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhC--CCeEEEEEecCCCcCccChHHHHHhhhCCCC-CcEEEE--ecCCchh-----
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHK-GSRVLV--TSRTARV----- 319 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~iiv--TtR~~~v----- 319 (1199)
+..++..........+..+.+.+.+. ++.+++|||+++.-....-+.+...+..... +++|+| .+-+..+
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99997444445666666777777664 5789999999965322222455555544332 455443 3333322
Q ss_pred ---hhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHH-HhcCCChHHHHHHHHhh
Q 000983 320 ---SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIV-GKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 320 ---~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~-~~c~glPLai~~~~~~l 387 (1199)
...++.. .+...+-+.+|-.+.+..++-..-... ...++.-+++..++ +..|---.||.++-...
T Consensus 174 ~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~--~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 174 PRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAG--VIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred hhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCC--CcCccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 2223322 367788889999998887764321111 12333334444444 44445556666655443
No 67
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=1.3e-05 Score=100.29 Aligned_cols=311 Identities=14% Similarity=0.162 Sum_probs=176.5
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeE---EEEecCCCC---hHHH
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRM---WVCVTVDYD---LPRI 245 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~~~~~~~---~~~~ 245 (1199)
.++||+.+++.+...+..-. .....++.+.|..|||||+|+++|.. .+.+.+...+ +-....... ..+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 36899999999999887654 34566999999999999999999997 4443322111 111222221 1222
Q ss_pred HHHHHHhc-------------------ccCC------------------CC----CCcHH-----HHHHHHHHHh-CCCe
Q 000983 246 LKGMIEFH-------------------SKME------------------QS----TSSIS-----LLETRLLEFL-TGQR 278 (1199)
Q Consensus 246 ~~~i~~~~-------------------~~~~------------------~~----~~~~~-----~l~~~l~~~l-~~k~ 278 (1199)
+++++.++ +... .. ..... ..+..+.... +.|+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333322 1000 00 00000 1222233333 4569
Q ss_pred EEEEEecCCCcCccChHHHHHhhhCCC----CCcEEEEe--cCCc--hhhhhhcCCCceeCCCCChhHHHHHHHHHhcCC
Q 000983 279 FLLVLDDVWNEDYRKWEPLQQLLKQGH----KGSRVLVT--SRTA--RVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivT--tR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1199)
.++|+||+.-.|....+-+......-. .-..|..+ .+.. .+-........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999995444433333333332221 11233333 3322 222222334678999999999999998887553
Q ss_pred CCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccC------CCHHHHHHHHhhhccccccCCCCCCCcccchhhc
Q 000983 351 GNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKY------DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLS 424 (1199)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~s 424 (1199)
.. ...+....|+++..|.|+-+.-+-..+... .+...|..-..+ +...... +.+.+.+..-
T Consensus 236 ~~--------~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~----i~~~~~~-~~vv~~l~~r 302 (849)
T COG3899 236 KL--------LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS----LGILATT-DAVVEFLAAR 302 (849)
T ss_pred cc--------ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh----cCCchhh-HHHHHHHHHH
Confidence 22 235778899999999999999888888653 223334322211 0100011 1233457788
Q ss_pred ccCCChhhHHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHhccCccccc---CC-Cc-
Q 000983 425 YDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN---ID-DK- 499 (1199)
Q Consensus 425 y~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~---~~-~~- 499 (1199)
.+.||...+..+-..|++-. .|+.+.|...|-. ...+.+....+.|....++-..+ .+ ..
T Consensus 303 l~kL~~~t~~Vl~~AA~iG~--~F~l~~La~l~~~-------------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~ 367 (849)
T COG3899 303 LQKLPGTTREVLKAAACIGN--RFDLDTLAALAED-------------SPALEAAALLDALQEGLILPLSETYRFGSNVD 367 (849)
T ss_pred HhcCCHHHHHHHHHHHHhCc--cCCHHHHHHHHhh-------------chHHHHHHHHHHhHhhceeccccccccccccc
Confidence 89999999999999999954 4556666655421 11555666566665554443221 11 11
Q ss_pred -c-eEEehHHHHHHHHHh
Q 000983 500 -V-KYQMHDLFHDLAQFV 515 (1199)
Q Consensus 500 -~-~~~mhdlv~~~a~~i 515 (1199)
. +-..||.+++.|-..
T Consensus 368 ~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 368 IATYKFLHDRVQQAAYNL 385 (849)
T ss_pred hhhHHhhHHHHHHHHhcc
Confidence 1 124688888877543
No 68
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=2.4e-06 Score=81.12 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=77.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
.+++.|.|+.|+|||||+++++.+.. .....+++.+......... ..+ +.+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccC
Confidence 35889999999999999999997432 2345566655543221100 000 223333333447
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhhh------hcCCCceeCCCCChhHH
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQI------MGIRSPYLLEYLPEDQC 339 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 339 (1199)
+.+|+||+|... .+|......+.+..+..+|++|+........ .+....+++.||+..|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 789999999543 5787777777665667899999987655422 12234678999987764
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.4e-05 Score=93.38 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=113.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
+++||.+..+..+..++..+. -...+.++|+.|+||||+|+.+++...-....... .+....+-..+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~---pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST---PCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC---CCccCHHHHHHhcCCC
Confidence 578999999999999997543 35677899999999999999998732111000000 0000000000000000
Q ss_pred -HhcccCCCCCCcHHHHHHHHHH----HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhh-hhh
Q 000983 251 -EFHSKMEQSTSSISLLETRLLE----FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVS-QIM 323 (1199)
Q Consensus 251 -~~~~~~~~~~~~~~~l~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~-~~~ 323 (1199)
+-+..........+.+.+.+.. -..+++-++|+|+|...+...+..+...+.....+.++|++|.+. .+. ...
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 0000000001122332222211 123566789999998766666777887777656667777777653 222 122
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
.....+++++++.++..+.+.+.+...+.. -..+....|++.++|-+-.+.
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~-------id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIA-------ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 334688999999999999888776543221 124556788999998774443
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.4e-05 Score=96.39 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc-------------------ccee
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-------------------FESR 231 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 231 (1199)
.++||.+.-+..+.+++..+. -...+.++|..|+||||+|+.+++...-... |...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 568999999999998887543 2456689999999999999999974211111 1111
Q ss_pred EEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHH-HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEE
Q 000983 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1199)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1199)
+++....... .+.+..+.+.+.. -..+++-++|+|++...+...++.+...+.......++
T Consensus 91 iEidAas~~k------------------VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTK------------------VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccC------------------HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 1111110001 1112222222211 12467779999999887777778888888765566666
Q ss_pred EEecCC-chhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH-HHHHH
Q 000983 311 LVTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKAI 383 (1199)
Q Consensus 311 ivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 383 (1199)
|++|.+ ..+... ......|++++++.++..+.+.+.+-..+. ....+..+.|++.++|.|- |+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-------~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-------PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665544 444322 223468999999999999988876643221 1124567889999999885 44443
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=1.5e-06 Score=96.17 Aligned_cols=137 Identities=23% Similarity=0.409 Sum_probs=94.6
Q ss_pred ccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEE
Q 000983 969 SQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLS 1048 (1199)
Q Consensus 969 ~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~ 1048 (1199)
+.++..|++++|.....| .++ .+|+.|.+++|..+..+|.. -.++|++|++++|.++..+| ++|+.|+
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~LP--~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-VLP--NELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP--------ESVRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccC-CCC--CCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc--------cccceEE
Confidence 467889999999655554 343 47999999999888888752 23689999999998787776 2577777
Q ss_pred ecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCC-CCCCceeecCCCCCCCCCCCCCCCCcCeEEccCCc
Q 000983 1049 IRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSL-NSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCP 1125 (1199)
Q Consensus 1049 l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l-~sL~~L~i~~c~~l~~lp~~~l~~sL~~L~i~~c~ 1125 (1199)
++++ ....++ .+|++|+.|.+.++......+. -..+ ++|++|+|++|..+ .+| .++|.+|+.|+++.+.
T Consensus 119 L~~n-~~~~L~--~LPssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i-~LP-~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 119 IKGS-ATDSIK--NVPNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNI-ILP-EKLPESLQSITLHIEQ 188 (426)
T ss_pred eCCC-CCcccc--cCcchHhheecccccccccccc---ccccCCcccEEEecCCCcc-cCc-ccccccCcEEEecccc
Confidence 7653 333332 3667899999865432211111 0112 58999999999755 455 3488999999998763
No 72
>PRK08727 hypothetical protein; Validated
Probab=98.28 E-value=2.2e-05 Score=83.18 Aligned_cols=148 Identities=20% Similarity=0.114 Sum_probs=90.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
..+.|+|..|+|||+|++++++. .......++++++.+ ....+. ..+ +.+ .+-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 45899999999999999999884 333333556665432 111111 111 111 223
Q ss_pred EEEEEecCCCcCc-cChH-HHHHhhhC-CCCCcEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHHHHHH
Q 000983 279 FLLVLDDVWNEDY-RKWE-PLQQLLKQ-GHKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIFKKI 346 (1199)
Q Consensus 279 ~LlVlDdvw~~~~-~~~~-~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 346 (1199)
-+||+||+..... ..|. .+...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 5899999953321 2232 23333322 13466799999842 23334444568899999999999999987
Q ss_pred hcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 347 AFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
+...+- .--+++..-|++.++|-.-.+
T Consensus 175 a~~~~l-------~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL-------ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC-------CCCHHHHHHHHHhCCCCHHHH
Confidence 754321 112466778888888776555
No 73
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.28 E-value=1.2e-05 Score=84.41 Aligned_cols=160 Identities=17% Similarity=0.236 Sum_probs=99.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCC
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~ 276 (1199)
....+.+||++|+||||||+.+....+-.. ..||..|-......-.++|.++... ...+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 366777999999999999999998543332 4577777665555555666554321 122467
Q ss_pred CeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE--ecCCchh---hhhhcCCCceeCCCCChhHHHHHHHHHhc---
Q 000983 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV--TSRTARV---SQIMGIRSPYLLEYLPEDQCWSIFKKIAF--- 348 (1199)
Q Consensus 277 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~a~--- 348 (1199)
+|.+|++|.|..-+..+-+. +||.-..|.-++| ||.++.. +..+....++.|+.|+.++-..++.+.+-
T Consensus 222 rkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 89999999997654433333 3455556776666 7776543 22334456889999999998888877432
Q ss_pred CCCCCCccccch---hHHHHHHHHHHhcCCChH
Q 000983 349 NQGNFSSRMQQQ---NLEAIGREIVGKCKGLPL 378 (1199)
Q Consensus 349 ~~~~~~~~~~~~---~~~~~~~~i~~~c~glPL 378 (1199)
.........+++ -...+.+-++..|.|-.-
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 111111011121 123455667777888763
No 74
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=7.9e-07 Score=71.65 Aligned_cols=59 Identities=36% Similarity=0.411 Sum_probs=51.9
Q ss_pred ccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeeccccc
Q 000983 614 KLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMF 672 (1199)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~ 672 (1199)
++|++|++++|+++.+|. .|.++++|++|++++|.+...-|..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 78999999999999998655555688999999999999985
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=98.27 E-value=5.3e-05 Score=89.76 Aligned_cols=247 Identities=15% Similarity=0.145 Sum_probs=136.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|.+..++.+..|+.... .+...+.+.|+|++|+||||+|+++++.. . |+ .+-+..+...+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHH
Confidence 468999999999999986532 11236788999999999999999999843 1 22 222333332222 2223332
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc----cChHHHHHhhhCCCCCcEEEEecCCc-hhhh-h-h
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY----RKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQ-I-M 323 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~-~-~ 323 (1199)
....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .... . -
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2211100 00113678999999975432 235556665552 334466666432 2211 1 1
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccC-C--CHHHHHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKY-D--DVNKWRKIL 400 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~--~~~~w~~~l 400 (1199)
.....+++.+++.++....+.+.+...+.. . -.++...|++.++|-.-.+......+... . +.+....+.
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~----i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE----C---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG 222 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC----C---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh
Confidence 234578899999999988888776543321 1 14567889999999876665444444332 1 222222222
Q ss_pred hhhccccccCCCCCCCcccchhhccc-CCChhhHHHHHHhccCCCCcccCHHHHHHHHHHcccccc
Q 000983 401 SSDIWELEEGSSNGPHILPPLKLSYD-HLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQS 465 (1199)
Q Consensus 401 ~~~~~~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~ 465 (1199)
. .+....++.++..-+. .=+......+.. ..++. ..+-.|+.|.+...
T Consensus 223 ~---------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 223 R---------RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred c---------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1 1112345555554433 222233332222 12333 35678999999763
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.27 E-value=2.2e-08 Score=106.68 Aligned_cols=164 Identities=21% Similarity=0.299 Sum_probs=111.4
Q ss_pred cccceeeecCCCCCcc---ccCCCCCCCCCEEeecCCCCCCCCCCC---CCCCccceEEEccCCCCCCCcccccCCCCCC
Q 000983 970 QRLQLLALEGCPDGTL---VRAIPETSSLNFLILSKISNLDSFPRW---PNLPGLKALYIRDCKDLVSLSGEGALQSLTS 1043 (1199)
Q Consensus 970 ~~L~~L~l~~~~~~~~---~~~l~~l~sL~~L~L~~n~~l~~~~~~---~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~ 1043 (1199)
..++.+.+.+|..... ...-..+.-+..+++.+|..++....| ..+..|+.|..++|.+++..+....-++.++
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 3455555566652221 111123445667777788766655543 5678899999999998777665555678899
Q ss_pred cceEEecCCCCCCcCCCCCcc---CCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCC------CCCC
Q 000983 1044 LNLLSIRGCPKLETLPDEGLP---TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED------GLPE 1114 (1199)
Q Consensus 1044 L~~L~l~~c~~l~~l~~~~~~---~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~------~l~~ 1114 (1199)
|+.|.+++|..+...--..+. +.|+.+++..|....+-..-..-.+++.|++|.+++|..++..... --..
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 999999999976544211111 7899999999986654311113457899999999999887765111 1236
Q ss_pred CcCeEEccCCcchHHhhhc
Q 000983 1115 NLQHLVIQNCPLLTQQCRD 1133 (1199)
Q Consensus 1115 sL~~L~i~~c~~L~~~~~~ 1133 (1199)
.|..+.+.+||.+++...+
T Consensus 402 ~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLE 420 (483)
T ss_pred ccceeeecCCCCchHHHHH
Confidence 8899999999998886543
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.26 E-value=2.4e-05 Score=87.54 Aligned_cols=182 Identities=13% Similarity=0.161 Sum_probs=105.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccce-eEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 249 (1199)
++++|.+..++.+..++.... .+-+.++|++|+||||+|+.+++.. ....|.. ++-+..+...... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN------MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 467898888888887775433 3346799999999999999998732 1122221 1111222221211 22222
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-hcCCC
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-MGIRS 327 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~ 327 (1199)
+........ ..-.++.-++|+|+++..+......+...+......+++|+++... .+... .....
T Consensus 85 i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 221110000 0002456799999998766555566666665545667777766532 22211 11235
Q ss_pred ceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 328 PYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
.++++++++++..+.+...+-..+-. . -.+....|++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~----i---~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP----Y---VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC----C---CHHHHHHHHHHcCCCHHHH
Confidence 78999999999999888877543321 1 1356678899998876433
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.1e-05 Score=92.05 Aligned_cols=185 Identities=16% Similarity=0.160 Sum_probs=113.3
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc-------------------ccccee
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-------------------EHFESR 231 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 231 (1199)
.+++|.+..+..+...+..+. ....+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468899999999998886543 34567799999999999999998732110 011222
Q ss_pred EEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEE
Q 000983 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1199)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1199)
+++.......+. +...+.+.+... ..+++-++|+|++...+...++.+...+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 222221111111 112222222211 2356679999999876666778888888766566665
Q ss_pred E-EecCCchhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHHHH
Q 000983 311 L-VTSRTARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAG 385 (1199)
Q Consensus 311 i-vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 385 (1199)
| +||....+... ......+++++++.++..+.+.+.+-..+. .-..+....|++.++|-+ -|+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-------~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-------NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5 45544444322 233468899999999988777765533221 112455678899999866 45554443
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.4e-05 Score=89.87 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=115.0
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccce-eEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 249 (1199)
.++||-+.-+..+...+..+. -...+.++|+.|+||||+|+.+++...-...... ..+..+....+-..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 468899998888888776543 3457789999999999999999874221111000 0001111111101110000
Q ss_pred ---HHhcccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE-ecCCchhhh
Q 000983 250 ---IEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARVSQ 321 (1199)
Q Consensus 250 ---~~~~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~ 321 (1199)
...+.. ......+.+...+... +.+++-++|+|+++..+...|+.+...+......+.+|+ ||+...+..
T Consensus 96 h~Dv~eida--as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 96 HPDIIEIDA--ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCcEEEeec--cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 000000 0122333333333221 246677899999988776778888888876666666654 555555544
Q ss_pred hh-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 322 IM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 322 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
.. .....+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+--+
T Consensus 174 tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-------ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 174 TIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-------TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 33 233578999999999999999887543321 11355677899999877433
No 80
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=1.3e-06 Score=106.52 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=89.9
Q ss_pred ccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCc-ccCcccccCccccEEeccCCCcc-ccchhhcccCcccE
Q 000983 564 LRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-VLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNLQT 641 (1199)
Q Consensus 564 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~ 641 (1199)
+..|.+. .+.+...++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+++|++|++
T Consensus 420 v~~L~L~-----~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLD-----NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECC-----CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 5566665 34555556677899999999999999998 89999999999999999999998 78999999999999
Q ss_pred EecCCCCcccccchhhccc-cccceeeccccc
Q 000983 642 LKLIGCIWIMELPKDLANL-VKLRNLELEEMF 672 (1199)
Q Consensus 642 L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~n~ 672 (1199)
|+|++|.+.+.+|..+..+ .++..+++.+|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999889999998764 477888888874
No 81
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.24 E-value=2.2e-06 Score=90.32 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=61.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC--CChHHHHHHHHHhcccCCCCCCcH------HHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YDLPRILKGMIEFHSKMEQSTSSI------SLLETR 269 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~------~~l~~~ 269 (1199)
...++|+|++|+|||||++++|++.... +|+..+|+.+... +++.++++.+...+-....+.... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999965444 8999999998877 789999999843322211111111 111222
Q ss_pred HHHH-hCCCeEEEEEecCC
Q 000983 270 LLEF-LTGQRFLLVLDDVW 287 (1199)
Q Consensus 270 l~~~-l~~k~~LlVlDdvw 287 (1199)
...+ -.+++.++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2221 25899999999993
No 82
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.23 E-value=3.6e-05 Score=87.00 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEec--CCCChHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT--VDYDLPRILKG 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~~~ 248 (1199)
.+++|++..++.+..++.... .+.+.|+|.+|+||||+|+.+++... ...+. ..++.+. ...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 458899999999999986543 34568999999999999999987321 11121 1223221 111111 1111
Q ss_pred HHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-hcCC
Q 000983 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-MGIR 326 (1199)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~ 326 (1199)
.+..+....+ .....+-++|+|++..........+...+......+++|+++... .+... ....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111100000 001335689999996554444566777666555667777776432 22111 1223
Q ss_pred CceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 327 SPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
..+++.+++.++....+...+...+.. -..+....+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~-------i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE-------ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 468899999999988888777543321 124567788999999875533
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.22 E-value=1.3e-05 Score=97.65 Aligned_cols=173 Identities=19% Similarity=0.286 Sum_probs=95.5
Q ss_pred CccccchhhHH---HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHH
Q 000983 171 ANVFGRDDDKE---RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRIL 246 (1199)
Q Consensus 171 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~ 246 (1199)
++++|.+..+. .+.+.+... ....+.++|++|+||||||+.+++. ....|. .+.... ...+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~-----~lna~~~~i~d-- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS-----SLNAVLAGVKD-- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce-----eehhhhhhhHH--
Confidence 46888887664 455555433 2456689999999999999999983 333441 111110 0000
Q ss_pred HHHHHhcccCCCCCCcHHHHHHHHHHHh--CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEe--cCCch--hh
Q 000983 247 KGMIEFHSKMEQSTSSISLLETRLLEFL--TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVT--SRTAR--VS 320 (1199)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~ 320 (1199)
.........+.+ .+++.+||+||++.-+...++.+...+. .|+.++|+ |.+.. +.
T Consensus 93 ----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 93 ----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 111111111111 2567899999997655445555554443 35555553 44321 21
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
.. ......+.+++++.++...++.+.+-............--++....|++.+.|.-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 11 1223578999999999999998766410000000001112455677888887764
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.20 E-value=4.8e-05 Score=80.67 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=93.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
...+.|+|+.|+|||+|++++++. ....-..+.++++..... ....+.+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~----- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ----- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----
Confidence 347889999999999999999983 222223445665542100 00111112211
Q ss_pred eEEEEEecCCCcCc-cChHH-HHHhhhCC-CCC-cEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHHHH
Q 000983 278 RFLLVLDDVWNEDY-RKWEP-LQQLLKQG-HKG-SRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~-~~~~~-l~~~l~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1199)
--+|++||+..... ..|+. +...+... ..| .++|+||+.. +....+....+++++++++++-.+.+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 13789999954321 33432 33333221 133 4799999754 344556666789999999999999988
Q ss_pred HHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
+++...+- .--+++..-|++.+.|..-++..+-..+
T Consensus 178 ~~a~~~~~-------~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGF-------ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCC-------CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 86654321 1125677888888887776555544433
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.9e-05 Score=89.84 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=112.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
+++||.+.-+..+..++..+. -...+.++|+.|+||||+|+.+++...-.. ... ...+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCccc-ccC--ccccCCCcHHHHHHccCC
Confidence 568999989998888887643 234678999999999999999987321110 000 001111111112211111
Q ss_pred HhcccCC-CC---CCcHHHHHHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEE-EecCCchhhhhh-
Q 000983 251 EFHSKME-QS---TSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL-VTSRTARVSQIM- 323 (1199)
Q Consensus 251 ~~~~~~~-~~---~~~~~~l~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~~~- 323 (1199)
..+.... .. .+++.++.+.+... ..++.-++|+|+++..+...++.+...+........+| .||....+....
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 1110000 01 11222233333221 24566799999998777777888877776544455544 455544553322
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL 378 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 378 (1199)
.....|.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-------~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV-------QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCChHH
Confidence 33357899999999988888877643321 1124567889999999884
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=3.5e-05 Score=81.89 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=89.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
...+.|+|..|+|||+||+++++... .... ..++++..... .. + .. ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~-~~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DF-DPE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hh-ccc
Confidence 45678999999999999999998421 1121 23444433211 00 0 01 122
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhCC-CCCc-EEEEecCCchhhh--------hhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGS-RVLVTSRTARVSQ--------IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
.-+||+||+...+...-+.+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347899999654333334455555321 2334 4677766433211 23334678999999988777776654
Q ss_pred cCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 348 FNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
-..+. .--++..+.+++.+.|.+..+..+...+
T Consensus 171 ~~~~v-------~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGL-------QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCC-------CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32221 1124677788889999999887777665
No 87
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.16 E-value=4.9e-06 Score=90.93 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=65.6
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC--ChHHHHHHHHHhcccCCCC
Q 000983 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY--DLPRILKGMIEFHSKMEQS 259 (1199)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~ 259 (1199)
++++++..-. .-+-..|+|++|+||||||++||++.... +|+..+||.+.+.+ .+.++++.+...+-....+
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 4455554432 34467899999999999999999965444 89999999999988 7778888876332222211
Q ss_pred CCcHH---------HHHHHHHHHhCCCeEEEEEecCC
Q 000983 260 TSSIS---------LLETRLLEFLTGQRFLLVLDDVW 287 (1199)
Q Consensus 260 ~~~~~---------~l~~~l~~~l~~k~~LlVlDdvw 287 (1199)
..... ...+.++ -.+++++|++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~--e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLV--EHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHH--HcCCCEEEEEEChH
Confidence 11111 1112222 26899999999993
No 88
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=4.2e-07 Score=95.15 Aligned_cols=239 Identities=18% Similarity=0.112 Sum_probs=141.1
Q ss_pred HHhccCCcccEEecCCCCCc-----ccCcccccCccccEEeccCCC---c-cccchh-------hcccCcccEEecCCCC
Q 000983 585 KIFHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTE---I-KVLPNS-------ICNLYNLQTLKLIGCI 648 (1199)
Q Consensus 585 ~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~---i-~~lp~~-------i~~L~~L~~L~L~~~~ 648 (1199)
.....+..+..|+|++|.+. .+-+.+.+.++||.-++++-. . ..+|+. +-.+++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 44566778888888888764 344556677788888887642 1 244543 4456788888888886
Q ss_pred cccccch----hhccccccceeeccccccccccc-----------CCCCcCCccccCccCeEEecccCcCChhhhcCCCC
Q 000983 649 WIMELPK----DLANLVKLRNLELEEMFWFKCST-----------LPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPY 713 (1199)
Q Consensus 649 ~l~~lp~----~i~~L~~L~~L~l~~n~~~~~~~-----------lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 713 (1199)
+-...+. -|.+++.|+||+|.+|.+..... ...-+++-+.|+++....|.. .....
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga-------- 174 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGA-------- 174 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccH--------
Confidence 5433333 34667888888888885432110 111122233444443333211 11100
Q ss_pred CCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCC---
Q 000983 714 LTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL--- 790 (1199)
Q Consensus 714 L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--- 790 (1199)
......+...+.|+.+.+..|..... -.......+..+++|+.|+|..|..+.-
T Consensus 175 --------------~~~A~~~~~~~~leevr~~qN~I~~e---------G~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 175 --------------TALAEAFQSHPTLEEVRLSQNGIRPE---------GVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred --------------HHHHHHHHhccccceEEEecccccCc---------hhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 11222344556777777776654421 1134556788888999999986554321
Q ss_pred --CcccccCccCceeEEEEeCccCcccc-------CcCCcCCcCeEEecCCCCceec-----CCCCCcccccccccCCCC
Q 000983 791 --PQWMRDGRLQNLVSLTLKGCTNCRIL-------SLGQLSSLRVLNIKGMLELEKW-----PNDEDCRFLGRLKISNCP 856 (1199)
Q Consensus 791 --p~~~~~~~l~~L~~L~L~~~~~~~~~-------~l~~l~~L~~L~L~~~~~~~~~-----~~~~~~~~L~~L~l~~~~ 856 (1199)
...+ +.+++|+.|++++|...... .-...|+|++|.+.+|.....- ......+.|..|.+++|.
T Consensus 232 ~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 232 ALAKAL--SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHh--cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1112 34678999999999765543 2345789999999988644211 122346788888888886
Q ss_pred C
Q 000983 857 R 857 (1199)
Q Consensus 857 ~ 857 (1199)
.
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 5
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.8e-05 Score=88.34 Aligned_cols=187 Identities=15% Similarity=0.175 Sum_probs=107.3
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc-------------------ccee
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-------------------FESR 231 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 231 (1199)
+++||.+..+..+...+..+. -.+.+.++|++|+||||+|+.+++...-... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999888888877776543 2456789999999999999999873211100 0011
Q ss_pred EEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHH-HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEE
Q 000983 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1199)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1199)
..+..+.......+ +++. +.+.. -..+++-++|+|+++.-+....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~-----------------~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIR-----------------DAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHH-----------------HHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 11111111111111 1111 11111 12356679999999655444556666666554444554
Q ss_pred EEecCC-chhhhhh-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcC-CChHHHHHHHHhh
Q 000983 311 LVTSRT-ARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCK-GLPLAVKAIAGFL 387 (1199)
Q Consensus 311 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPLai~~~~~~l 387 (1199)
|++|.+ ..+...+ .....+++.+++.++....+.+.+...+.. --.+....|++.++ +++.|+..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-------i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-------IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444433 3343322 233578899999999988888877433211 11356677888775 4567766665543
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=4.7e-05 Score=90.06 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH-
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM- 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i- 249 (1199)
+++||.+..+..+..++..+. -.+.+.++|..|+||||+|+.+++...-.... -+..+.....-..+...-
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCcccHHHHHHhccCc
Confidence 578999999999999987643 34577899999999999999998732111100 000011000000000000
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-h
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-M 323 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~ 323 (1199)
.+-+.........++.+.+.+... ..+++-++|+|++...+......+...+......+++|++|.+. .+... .
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 000000001112222332222211 23566789999997665455666777776555566777666543 23211 2
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
+....+.+..++.++..+.+.+.+-..+.. -..+....|++.++|.+.-+.
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-------id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIA-------YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-------cCHHHHHHHHHHhCCCHHHHH
Confidence 223567888999999998888776543321 124567789999998874433
No 91
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=5.4e-05 Score=84.57 Aligned_cols=197 Identities=14% Similarity=0.193 Sum_probs=116.4
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc--ccceeEEEEecCCCChHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE--HFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
...++|.+...+.+...+..+. -...+.|+|..|+||||+|+.+++...-.. .+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 3568999999999999997653 355688999999999999999887321100 011110 000111111222
Q ss_pred HHHHh-------cccC----C---CCCCcHHHHHHHHHHHh-----CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCc
Q 000983 248 GMIEF-------HSKM----E---QSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGS 308 (1199)
Q Consensus 248 ~i~~~-------~~~~----~---~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 308 (1199)
.+... +... . ...-.++++. .+.+++ .+++-++|+|+++..+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 1000 0 0112234433 333333 3567799999998777666777887776655555
Q ss_pred EEEE-ecCCchhhhhh-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 309 RVLV-TSRTARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 309 ~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
.+|+ |++...+.... .....+.+.+++.++..+++........ -..+....|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---------~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---------SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5444 44433332222 2235889999999999999987432111 113456789999999998665443
No 92
>PRK05642 DNA replication initiation factor; Validated
Probab=98.13 E-value=7.3e-05 Score=79.13 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=94.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
...+.|+|..|+|||+|++++++. ....-..++|++... +... ... +.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 356789999999999999999873 222223456665432 1110 011 22222222
Q ss_pred eEEEEEecCCCcC-ccChH-HHHHhhhC-CCCCcEEEEecCCch---------hhhhhcCCCceeCCCCChhHHHHHHHH
Q 000983 278 RFLLVLDDVWNED-YRKWE-PLQQLLKQ-GHKGSRVLVTSRTAR---------VSQIMGIRSPYLLEYLPEDQCWSIFKK 345 (1199)
Q Consensus 278 ~~LlVlDdvw~~~-~~~~~-~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (1199)
. +||+||+.... ...|+ .+...+.. ...|.+||+|++... ....+.....+++++++.++-.+.+..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899995321 13443 34444432 234677999887432 233344456789999999999999986
Q ss_pred HhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 346 IAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
++...+- . . -+++..-|++++.|-.-++..+-..|
T Consensus 178 ka~~~~~-~---l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-H---L---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-C---C---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6654321 1 1 14777888888888776655554444
No 93
>PTZ00202 tuzin; Provisional
Probab=98.12 E-value=3.5e-05 Score=84.49 Aligned_cols=164 Identities=12% Similarity=0.142 Sum_probs=99.7
Q ss_pred ccCCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 168 IDTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
.+...|+||+.+..++...|...+ ....+++.|+|++|+|||||++.+..... + .+++.-.. +..++++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHH
Confidence 345689999999999999986543 22356999999999999999999996322 2 23333333 6799999
Q ss_pred HHHHhcccCCCCC--CcHHHHHHHHHHHh-C-CCeEEEEEecCCCcCccChHHHHH---hhhCCCCCcEEEEecCCchhh
Q 000983 248 GMIEFHSKMEQST--SSISLLETRLLEFL-T-GQRFLLVLDDVWNEDYRKWEPLQQ---LLKQGHKGSRVLVTSRTARVS 320 (1199)
Q Consensus 248 ~i~~~~~~~~~~~--~~~~~l~~~l~~~l-~-~k~~LlVlDdvw~~~~~~~~~l~~---~l~~~~~gs~iivTtR~~~v~ 320 (1199)
.++.+++...... +-...+++.+.+.- . +++.+||+-==.. +.+..+.. .|.....-|.|++---.+.+.
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 9999999643221 22344445444432 2 6777777643211 12222221 233344556777644333221
Q ss_pred hh---hcCCCceeCCCCChhHHHHHHHH
Q 000983 321 QI---MGIRSPYLLEYLPEDQCWSIFKK 345 (1199)
Q Consensus 321 ~~---~~~~~~~~l~~L~~~~~~~lf~~ 345 (1199)
.. ...-.-|.+..++.++|.+.-..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhh
Confidence 11 11224577888888888776544
No 94
>PRK09087 hypothetical protein; Validated
Probab=98.12 E-value=3.5e-05 Score=80.75 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=90.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
.+.+.|+|..|+|||+|++.+++... ..+++.. .+...++. .+ ..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~-----------------~~----~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN-----------------AA----AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH-----------------hh----hc-
Confidence 35689999999999999999886321 1233221 11111111 11 11
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhC-CCCCcEEEEecCC---------chhhhhhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
-+|++||+.... .+-+.+...+.. ...|..||+|++. ++....+.....+++++++.++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889995421 112334433322 1346679998873 3455556667899999999999999999887
Q ss_pred cCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 348 FNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
-..+- .--+++..-|++.+.|..-++..+-..|
T Consensus 167 ~~~~~-------~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADRQL-------YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHcCC-------CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 54321 1125677888888888887766544333
No 95
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=9.9e-05 Score=82.93 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=114.0
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccccccee------------------E
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESR------------------M 232 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~------------------~ 232 (1199)
.+++|.+..+..+.+.+..+. -...+.++|+.|+||+|+|..+++..--....... -
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 578999999999999887653 35578899999999999998887632111100000 0
Q ss_pred EEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh-----CCCeEEEEEecCCCcCccChHHHHHhhhCCCCC
Q 000983 233 WVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1199)
Q Consensus 233 wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1199)
|+.....++...+.... ..-+......-.++++. .+.+.+ .+++-++|+||++..+......+...+.....+
T Consensus 94 ~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 94 RIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHccCCCCeEEEeccc-ccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 00001111100000000 00000000112234432 233333 256679999999877777777888888765566
Q ss_pred cEEEEecCCc-hhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 308 SRVLVTSRTA-RVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 308 s~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
+.+|++|... .+... ......+.+.+++.++..+++....... + .+....+++.++|.|+....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---------~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---------P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---------C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 7777777654 33222 2234578999999999999988754211 0 1222678999999998665543
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.10 E-value=0.00011 Score=84.22 Aligned_cols=183 Identities=12% Similarity=0.154 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc--c------------------ccce
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR--E------------------HFES 230 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~------------------~F~~ 230 (1199)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.++....-. . +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 467999999999999886543 34577899999999999999888632110 0 1111
Q ss_pred eEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcE
Q 000983 231 RMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSR 309 (1199)
Q Consensus 231 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 309 (1199)
+++........ + ....+.+.+... ..+++-++|+|++...+......+...+......+.
T Consensus 89 -~~~~~~~~~~~-~-----------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV-D-----------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH-H-----------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 12211111111 0 111122221111 234556899999965544456677777765555667
Q ss_pred EEEecCCch-hhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 310 VLVTSRTAR-VSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 310 iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
+|++|.+.. +... ......+++.++++++..+.+...+-..+.. --.+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-------i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-------IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCChHHHHHHH
Confidence 666665433 2222 2233578889999999888888776543321 113677788999999886665444
No 97
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=6.3e-05 Score=78.57 Aligned_cols=164 Identities=17% Similarity=0.193 Sum_probs=94.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccc--eeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE--SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
....+.|+|..|+|||.|.+++++. +.+..+ .+++++ ..+....+...+.. ..... +.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~-----~~~~~----~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRD-----GEIEE----FKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHT-----TSHHH----HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHc-----ccchh----hhhhh
Confidence 3445789999999999999999983 333222 234443 33455555554432 22223 33333
Q ss_pred CCCeEEEEEecCCCcCcc-Ch-HHHHHhhhC-CCCCcEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHH
Q 000983 275 TGQRFLLVLDDVWNEDYR-KW-EPLQQLLKQ-GHKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSI 342 (1199)
Q Consensus 275 ~~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 342 (1199)
+ .-=+|++||++..... .| +.+...+.. ...|-+||+|++.. +....+.....+++++++.++-.++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 3347889999653221 22 223333322 13566899999643 3344556667899999999999999
Q ss_pred HHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHH
Q 000983 343 FKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1199)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 385 (1199)
+.+.|...+- +--+++++-|++.+.+..-.+..+-.
T Consensus 175 l~~~a~~~~~-------~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 175 LQKKAKERGI-------ELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHTT---------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHhCC-------CCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9988865432 12256777788887766655544433
No 98
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.10 E-value=2.7e-05 Score=88.97 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=100.4
Q ss_pred CCccccchhhHHHHHHHHhCCCCC-------CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSDEFD-------EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
.+++.|++..++++.+.+...-.. +-...+-+.++|++|+|||++|+++++ .....| +.+. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~----~ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVV----G 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecc----h
Confidence 357899999999998876432100 012245588999999999999999998 333333 2221 1
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC-----------ccChHHHHHhh---hC--CCC
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED-----------YRKWEPLQQLL---KQ--GHK 306 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l---~~--~~~ 306 (1199)
..+..... ......+...+...-...+.+|++||++... ......+...+ .. ...
T Consensus 190 ~~l~~~~~---------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKYI---------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11111110 0111112222222223467899999996421 11122233333 21 134
Q ss_pred CcEEEEecCCchhh-----hhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 307 GSRVLVTSRTARVS-----QIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 307 gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
+.+||.||...... .....+..+.+...+.++..++|..++...... ..-. ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~----~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA----EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC----ccCC----HHHHHHHcCCCC
Confidence 67788888754321 111224578899999999999999887554321 1112 346667776654
No 99
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1e-07 Score=96.80 Aligned_cols=159 Identities=20% Similarity=0.208 Sum_probs=88.7
Q ss_pred cccEEeccCCCcc--ccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCcc
Q 000983 615 LLRYLDLSRTEIK--VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNL 692 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L 692 (1199)
.|++|||++..|+ .+..-++.+.+|+.|.+.++.+-..+...|.+-.+|+.|+++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~--------------------- 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC--------------------- 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc---------------------
Confidence 4666677666655 34444555666666666665544444444444455555555443
Q ss_pred CeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccC
Q 000983 693 HVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQ 772 (1199)
Q Consensus 693 ~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (1199)
+..+.... ...+..++.|..|+++|+..... ........+
T Consensus 245 -----sG~t~n~~-------------------------~ll~~scs~L~~LNlsWc~l~~~---------~Vtv~V~hi- 284 (419)
T KOG2120|consen 245 -----SGFTENAL-------------------------QLLLSSCSRLDELNLSWCFLFTE---------KVTVAVAHI- 284 (419)
T ss_pred -----cccchhHH-------------------------HHHHHhhhhHhhcCchHhhccch---------hhhHHHhhh-
Confidence 22221111 11244556777888888855421 111111222
Q ss_pred CCCCCcEEEEeecCCCCCCcccc--cCccCceeEEEEeCccCcccc---CcCCcCCcCeEEecCCCCc
Q 000983 773 PHPNLEELQIFNYFGNSLPQWMR--DGRLQNLVSLTLKGCTNCRIL---SLGQLSSLRVLNIKGMLEL 835 (1199)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~~~~~~~~---~l~~l~~L~~L~L~~~~~~ 835 (1199)
-++|+.|+++|+.-.-....+. ...+++|..|+|++|...... .+-+++.|++|.++.|..+
T Consensus 285 -se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 285 -SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred -chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 2478888888764322211110 145788899999888766554 6678888888888888644
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00012 Score=83.03 Aligned_cols=181 Identities=10% Similarity=0.055 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHhCCCCC----CCCCcEEEEEEeCCCCcHHHHHHHHhccccccc------------------cc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFD----EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE------------------HF 228 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F 228 (1199)
++++|-+.-++.+..++..+... ...-.+-+.++|+.|+|||++|+.+++...-.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46789999999999988764300 011356788999999999999999876211100 00
Q ss_pred ceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHH---HHHH-HhCCCeEEEEEecCCCcCccChHHHHHhhhCC
Q 000983 229 ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLET---RLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG 304 (1199)
Q Consensus 229 ~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (1199)
+...++.... ....++++.+ .+.. -..+++-++|+|+++..+......+...+...
T Consensus 85 pD~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 1111111100 0112222222 1111 01345568888999876666666777777665
Q ss_pred CCCcEEEEecCC-chhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 305 HKGSRVLVTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 305 ~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
..+..+|++|.+ ..+... ......+.+.+++.++..+.+..... . . .+.+..++..++|.|.....
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~-----~----~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V-----D----PETARRAARASQGHIGRARR 212 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C-----C----HHHHHHHHHHcCCCHHHHHH
Confidence 666766666655 334322 22345889999999999888874321 1 1 34577899999999975544
Q ss_pred H
Q 000983 383 I 383 (1199)
Q Consensus 383 ~ 383 (1199)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 4
No 101
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.07 E-value=0.00011 Score=75.46 Aligned_cols=90 Identities=11% Similarity=0.138 Sum_probs=63.9
Q ss_pred CCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhhh-cCCCceeCCCCChhHHHHHHHHHhcCCCCC
Q 000983 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNF 353 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 353 (1199)
+.+-++|+||+...+...++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 556789999997666566777888887666667777777643 222221 22357899999999988888776 1 1
Q ss_pred CccccchhHHHHHHHHHHhcCCChH
Q 000983 354 SSRMQQQNLEAIGREIVGKCKGLPL 378 (1199)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~c~glPL 378 (1199)
. .+.+..|++.++|.|.
T Consensus 170 ~--------~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S--------EEAAELLLALAGGSPG 186 (188)
T ss_pred C--------HHHHHHHHHHcCCCcc
Confidence 1 3568899999999885
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=0.0001 Score=85.61 Aligned_cols=169 Identities=18% Similarity=0.159 Sum_probs=103.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhccccccccc--ceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHF--ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..-+.|+|..|+|||+|++++++. +.... ..+++++ ..++...+...+.... +. ...+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~-~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH------KE-IEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hH-HHHHHHHhc
Confidence 345789999999999999999983 32222 1233333 3455666665554210 11 123333333
Q ss_pred CCeEEEEEecCCCcCc--cChHHHHHhhhC-CCCCcEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHHH
Q 000983 276 GQRFLLVLDDVWNEDY--RKWEPLQQLLKQ-GHKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIF 343 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1199)
+.-+||+||+..... ...+.+...+.. ...|..||+|+... ++...+...-.+++++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 334888999964321 112344444432 13445788887632 34445556678889999999999999
Q ss_pred HHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
.+.+-..+- ...--+++..-|++.++|.|-.+.-+...+
T Consensus 285 ~~~~~~~gl-----~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 285 KKEIKNQNI-----KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHhcCC-----CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 988754321 001225778899999999997776665443
No 103
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=8.6e-05 Score=81.40 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=135.2
Q ss_pred cCCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
.+..++||+.|++.+..|+...- +.....-+.|.|.+|.|||.+...|+.+..-...=..++.+.+..--...+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45679999999999999997664 3445667889999999999999999985332221124466666655667788888
Q ss_pred HHHhcccCCCCCCcHHHHHHHHHHHhCCC--eEEEEEecCCCcCccChHHHHHhhhC-CCCCcEEEEecC--Cch----h
Q 000983 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQ--RFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSR--TAR----V 319 (1199)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR--~~~----v 319 (1199)
|...+...........+.++.+.+..+.. -+|+|+|.++......-..+...|.+ .-+++|+|+.-- .-+ .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88777322222122244455555555433 68999999964322233344444433 245666654321 111 1
Q ss_pred hhhhc-----CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 320 SQIMG-----IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 320 ~~~~~-----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
...+. ....+..++-+.++-.+.|..+.-...... ..+...+-.|++++..-|-+--|+.+.-+.+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~--~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI--FLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc--cchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 124567789999999999998875443221 1334566667777777777778887777665
No 104
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=8.7e-05 Score=88.41 Aligned_cols=193 Identities=13% Similarity=0.077 Sum_probs=113.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
+++||-+.-+..+...+..+. -...+.++|..|+||||+|+.+++...-...+.. -.+... ..-+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHH
Confidence 568999999999988887543 2455789999999999999999873211100000 000000 1111111
Q ss_pred Hh-----cccCCCCCCcHHHH---HHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhh
Q 000983 251 EF-----HSKMEQSTSSISLL---ETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVS 320 (1199)
Q Consensus 251 ~~-----~~~~~~~~~~~~~l---~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (1199)
.. +.........++.+ .+.+... ..+++-++|+|+++..+....+.+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 00000001122222 2222111 2466779999999877767778888888765556665555544 4443
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
.. ......|.+++++.++..+.+.+.+-..+. ....+....|++.++|.+--+..
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-------~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-------PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22 233468899999999999888876533221 11135567899999997754433
No 105
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00013 Score=85.66 Aligned_cols=196 Identities=12% Similarity=0.125 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|.+..++.+..++..+. ..+.+.++|+.|+||||+|+.+++... |.-|.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 468899999999999886543 245778999999999999999987321 11121110 000001111111
Q ss_pred Hhcc-----cCCCCCCcHHHHHH---HHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEec-CCchhh
Q 000983 251 EFHS-----KMEQSTSSISLLET---RLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTARVS 320 (1199)
Q Consensus 251 ~~~~-----~~~~~~~~~~~l~~---~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 320 (1199)
.... .........+++.. .+... ..+++-++|+|+++..+...+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 1000 00000112222222 11110 12344469999997766566777887776655556655544 444443
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH-HHHHHHH
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKAIAG 385 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 385 (1199)
.. ......+++.+++.++....+...+...+.. --.+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-------Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-------IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 2334578999999999988888766433211 113557788999998664 4444433
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00015 Score=83.88 Aligned_cols=181 Identities=13% Similarity=0.157 Sum_probs=112.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc-------------------ccccee
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-------------------EHFESR 231 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 231 (1199)
+++||.+.-++.+...+..+. -.+.+-++|+.|+||||+|+.+++.-.-. +.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 568999988888888876543 24578899999999999999998621000 111122
Q ss_pred EEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEE
Q 000983 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL 311 (1199)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (1199)
+.+..+....+.+ .+.+++..... -..+++-++|+|++...+....+.+...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 11222211100 013556689999997766566777888887666677766
Q ss_pred Eec-CCchhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 312 VTS-RTARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 312 vTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
++| ....+... ......+++++++.++..+.+.+.+...+.. -..+....|++.++|.+--+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-------i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-------HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 655 43444332 2334678999999999999988877543321 12455678999999877543
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.0001 Score=86.66 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=108.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc-------------------cccee
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-------------------HFESR 231 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 231 (1199)
+++||-+.-++.+..++.... -...+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999997653 345678999999999999999987321111 11112
Q ss_pred EEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHH----HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCC
Q 000983 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE----FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1199)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1199)
+.+..... ..++.+.+.+.. -..++.-++|+|+|+..+......+...+......
T Consensus 91 ~eidaas~---------------------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAASR---------------------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEccccc---------------------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 22222211 222222221111 11356668999999877666777788877766666
Q ss_pred cEEEEecCC-chhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 308 SRVLVTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 308 s~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
+++|++|.+ ..+... ......+++++++.++..+.+...+-..+.. -..+....|++.++|.+--+
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-------~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-------FENAALDLLARAANGSVRDA 217 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCcHHHH
Confidence 776665543 333322 2223568899999988777766655433211 11345667888888877433
No 108
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=8.1e-07 Score=103.54 Aligned_cols=105 Identities=27% Similarity=0.339 Sum_probs=55.3
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhcccccccee
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 666 (1199)
+..++.|.+|++.+|.|..+...+..+.+|++|+|++|.|..+. .+..|..|+.|++++|. +..++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc-CCccchhhhcc
Confidence 45556666666666666655444555666666666666666552 35555556666666655 22222 34445666666
Q ss_pred ecccccccccccCCCCcCCccccCccCeEE
Q 000983 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
++++|.+..+... . ...+.+|+.+.+..
T Consensus 168 ~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 168 DLSYNRIVDIEND-E-LSELISLEELDLGG 195 (414)
T ss_pred cCCcchhhhhhhh-h-hhhccchHHHhccC
Confidence 6666544332110 0 24445555554443
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00013 Score=86.78 Aligned_cols=195 Identities=10% Similarity=0.097 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccccc--ceeEEEEecCCCChHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF--ESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~ 248 (1199)
+++||-+.-+..+.+++..+. -...+.++|..|+||||+|+.+++...-.... ....+-.+.... .-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~----~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ----ACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH----HHHH
Confidence 468898888888888887653 34677899999999999999997532110000 000000011110 0111
Q ss_pred HHHh-----cccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEec-CCch
Q 000983 249 MIEF-----HSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTAR 318 (1199)
Q Consensus 249 i~~~-----~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 318 (1199)
|... +.........++++.+.+... ..++.-++|+|+|+..+...+..+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000 000000112233333322211 12445589999998877667777777776655566666554 4344
Q ss_pred hhh-hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 319 VSQ-IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 319 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
+.. .......++++.++.++..+.+.+.+...+.. -..+....|++.++|.+--+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-------ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-------AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 432 23334688999999999988888776443221 123566788889988774443
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00019 Score=85.16 Aligned_cols=180 Identities=13% Similarity=0.167 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc-------------------cccee
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-------------------HFESR 231 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 231 (1199)
.++||-+.-++.+..++.... -.+.+.++|..|+||||+|+.+++...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468899999999999887643 245677999999999999999986321110 11111
Q ss_pred EEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCC
Q 000983 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1199)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1199)
+++..+. ....+.+.+.+... ..+++-++|+|+++..+......+...+......
T Consensus 91 ~ei~~~~---------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAAS---------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeeccc---------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 2222111 11222222222111 1356679999999776655667777777665556
Q ss_pred cEEEEecCC-chhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH-HHHHH
Q 000983 308 SRVLVTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKAI 383 (1199)
Q Consensus 308 s~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 383 (1199)
+.+|++|.+ ..+... ......++++.++.++..+.+.+.+...+. ....+....|++.++|.+- |+..+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-------~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-------PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666665543 333211 122357889999999988888776643221 1123556788999999774 44443
No 111
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.99 E-value=0.00018 Score=73.79 Aligned_cols=174 Identities=20% Similarity=0.256 Sum_probs=103.3
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+|||.++-++++.-.+.... .....+--+.++|++|.||||||.-+++ .....+.. +-........-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~----tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI----TSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe----cccccccChhhHHHHH
Confidence 579999998888876665433 1234566788999999999999999998 33333321 1111111111112222
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC--------CCCcEEE-----------
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG--------HKGSRVL----------- 311 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~gs~ii----------- 311 (1199)
.. |+ +.=.+++|.++......-+-+..++.+. ++++|.+
T Consensus 99 t~---------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TN---------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hc---------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 11 22 2235666777655443334444444332 3444443
Q ss_pred EecCCchhhhhhc--CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 312 VTSRTARVSQIMG--IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 312 vTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
.|||.-.+...+. ...+.+++.-+.+|-.+...+.|..-+- +-.++-+.+|+++..|-|--.
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-------~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-------EIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-------CCChHHHHHHHHhccCCcHHH
Confidence 5888654433221 1246678888999999998887743221 223567889999999999533
No 112
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=6.5e-05 Score=86.47 Aligned_cols=194 Identities=12% Similarity=0.103 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEE-----EecCCCChHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWV-----CVTVDYDLPRI 245 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-----~~~~~~~~~~~ 245 (1199)
++++|.+.-++.+..++..+. -...+.++|+.|+||||+|+.+++.-.-...++...|. .+....+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~---- 86 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES---- 86 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH----
Confidence 468899988888888886543 24457799999999999999998732111111111111 1111100
Q ss_pred HHHHHHhccc-----CCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEec-C
Q 000983 246 LKGMIEFHSK-----MEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-R 315 (1199)
Q Consensus 246 ~~~i~~~~~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R 315 (1199)
-+.+...... ........+++.+..... ..+++-++|+|++...+...++.+...+......+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1111100000 000111233333222111 23556688999997666567888888887666677766555 4
Q ss_pred Cchhhhhh-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 316 TARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 316 ~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
...+...+ .....+++.++++++..+.+...+-..+. .-..+.+..|++.++|.+--+
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-------~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-------SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHH
Confidence 44443322 12246889999999988888776643221 112467788999999977433
No 113
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=8.4e-06 Score=59.74 Aligned_cols=34 Identities=44% Similarity=0.499 Sum_probs=15.9
Q ss_pred cccEEeccCCCccccchhhcccCcccEEecCCCC
Q 000983 615 LLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCI 648 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 648 (1199)
+|++|++++|+|+.+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 3445555555555554445555555555555544
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00023 Score=84.00 Aligned_cols=198 Identities=14% Similarity=0.106 Sum_probs=113.3
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
++++|-+..+..+.+++.... -...+.++|+.|+||||+|+.+++...-....... .+... ..-+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHh
Confidence 467898888888888886542 24577799999999999999998742211100000 00000 0001111
Q ss_pred Hhcc-----cCCCCCCcHHHH---HHHHHH-HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhh
Q 000983 251 EFHS-----KMEQSTSSISLL---ETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVS 320 (1199)
Q Consensus 251 ~~~~-----~~~~~~~~~~~l---~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (1199)
.... ........++.+ .+.+.. -..+++-+||+|++...+...+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 0000 000001112222 222211 12456679999999776656677787777654445556555544 4443
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHHHHhh
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAGFL 387 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 387 (1199)
.. ......+++++++.++..+.+...+...+. .-..+.++.|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-------~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-------DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 222357889999999999888876654332 112456778899999854 6777766554
No 115
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.00022 Score=75.59 Aligned_cols=193 Identities=18% Similarity=0.193 Sum_probs=117.1
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc-----cccceeEEEEecCCCChHHHHHHHHHhc
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-----EHFESRMWVCVTVDYDLPRILKGMIEFH 253 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1199)
-++++.+++..+. .....-+.|||..|.|||++++++.+..-.. ..+ .++.|......+...+...|++++
T Consensus 45 ~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 45 ALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHh
Confidence 3455555555433 4556678999999999999999999742211 111 356777888899999999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHhCC-CeEEEEEecCCCc---CccChHHHHHhhhC---CCCCcEEEEecCCchhh-----h
Q 000983 254 SKMEQSTSSISLLETRLLEFLTG-QRFLLVLDDVWNE---DYRKWEPLQQLLKQ---GHKGSRVLVTSRTARVS-----Q 321 (1199)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~l~~-k~~LlVlDdvw~~---~~~~~~~l~~~l~~---~~~gs~iivTtR~~~v~-----~ 321 (1199)
+...........+.......++. +--+||+|.+.+. ...+-..+...++. .-.=+-|.|-|+.-.-+ +
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 98876666666666555555543 3348899999652 11222334444432 22334566666632211 1
Q ss_pred hhcCCCceeCCCCCh-hHHHHHHHHHhc--CCCCCCccccchhHHHHHHHHHHhcCCChHH
Q 000983 322 IMGIRSPYLLEYLPE-DQCWSIFKKIAF--NQGNFSSRMQQQNLEAIGREIVGKCKGLPLA 379 (1199)
Q Consensus 322 ~~~~~~~~~l~~L~~-~~~~~lf~~~a~--~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 379 (1199)
..+...++.+..... ++...|+..... .-... .+-...++++.|...++|+.=-
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~----S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKP----SNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC----CCCCCHHHHHHHHHHcCCchHH
Confidence 112234666766654 455555543321 11111 1223468899999999998733
No 116
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.92 E-value=0.0001 Score=83.01 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=85.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
++++|.+..++.+..++..+. ...++.++|.+|+||||+|+++++. .... ...+..+. .... ..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHH-HHHHHH
Confidence 578999999999999987542 3567888999999999999999873 2211 22333333 1111 111111
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc-CccChHHHHHhhhCCCCCcEEEEecCCch-hhhh-hcCCC
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI-MGIRS 327 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~ 327 (1199)
.... ... .+.+.+-++|+||+... .......+...+.....++++|+||.... +... .....
T Consensus 89 ~~~~-------------~~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFA-------------STV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHH-------------Hhh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 1100 000 01234567899999654 22233445555655566788999886532 1111 12223
Q ss_pred ceeCCCCChhHHHHHHHH
Q 000983 328 PYLLEYLPEDQCWSIFKK 345 (1199)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~ 345 (1199)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 566767777776665543
No 117
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.1e-07 Score=96.69 Aligned_cols=175 Identities=21% Similarity=0.190 Sum_probs=111.7
Q ss_pred CCcEEEccccccCC-CCC-cccccccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCCCCCC---CCCCCccceEE
Q 000983 949 PQKLEISGCDLLST-LPN-SEFSQRLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLDSFPR---WPNLPGLKALY 1022 (1199)
Q Consensus 949 l~~L~l~~~~~~~~-~p~-~~~~~~L~~L~l~~~~-~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~---~~~l~~L~~L~ 1022 (1199)
+++||+++...... +-. ...+.+|+.|.+.++. +..+...+..-.+|+.|+|+.|...+.... +.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 45666665432211 000 1235788888888887 555556666778899999999887665432 37788999999
Q ss_pred EccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCC-CCc---cCCcceEEeccCCCCcccCCCCCCCCCCCCCceee
Q 000983 1023 IRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPD-EGL---PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYI 1098 (1199)
Q Consensus 1023 l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~---~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i 1098 (1199)
|++|...+..-....-.--+.|..|+|+||..--.... ..+ .++|.+||+++|..++.-- ...+.+++.|++|.+
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSL 345 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeeh
Confidence 99998443332111112235788889998864222111 011 1889999999998776521 124678899999999
Q ss_pred cCCCCCCC--CCCCCCCCCcCeEEccCC
Q 000983 1099 EDCPLLQS--FPEDGLPENLQHLVIQNC 1124 (1199)
Q Consensus 1099 ~~c~~l~~--lp~~~l~~sL~~L~i~~c 1124 (1199)
+.|-.|-. +-+-+-.|+|.+|++.||
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 99965421 111123479999999998
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00039 Score=79.82 Aligned_cols=177 Identities=15% Similarity=0.180 Sum_probs=104.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc------cccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR------EHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~wv~~~~~~~~~~ 244 (1199)
++++|.+..++.+..++..+. -.+.+.++|++|+||||+|+.+.+...-. ..|...+ +.....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~----- 85 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA----- 85 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc-----
Confidence 467899999999999987543 34588899999999999999998732110 1111111 011100
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHH----HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEec-CCchh
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLE----FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTARV 319 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v 319 (1199)
.....+.+.+.+.+ -..+++-++|+|++.......++.+...+......+.+|++| +...+
T Consensus 86 --------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 86 --------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred --------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 01111222211111 012455689999996544445666666665444455555554 33333
Q ss_pred hhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHH
Q 000983 320 SQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLA 379 (1199)
Q Consensus 320 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 379 (1199)
... ......++.+++++++....+...+...+.. -..+.+..|++.++|.+-.
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-------i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-------FEDDALHIIAQKADGALRD 205 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHhCCCCHHH
Confidence 222 2233578899999999998888877543321 1146777888899986643
No 119
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.90 E-value=3.7e-05 Score=86.29 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=73.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.++++.+...+.+...|.... .|.++|++|+|||++|+++++.......|+.+.||++++.++..+.+....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--------~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--------NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 457888999999999987543 677899999999999999998544455788889999999988776654331
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHh--CCCeEEEEEecCCCcCc
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFL--TGQRFLLVLDDVWNEDY 291 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l--~~k~~LlVlDdvw~~~~ 291 (1199)
-. ... -......+.+.+.+.. .+++++||+|++...+.
T Consensus 247 P~-~vg--y~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 247 PN-GVG--FRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred CC-CCC--eEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 10 000 0000011112222222 24689999999976553
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00032 Score=83.76 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=114.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccc--eeEEEEecCCCChHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE--SRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~ 248 (1199)
.+++|.+..++.+..++..+. -..-+.++|+.|+||||+|+.+++...-..... ...+-.+....+ -+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~----C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH----CQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH----HHH
Confidence 578999999999999987653 345678999999999999999987321111110 000000111100 011
Q ss_pred HHHhccc-----CCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEec-CCch
Q 000983 249 MIEFHSK-----MEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTAR 318 (1199)
Q Consensus 249 i~~~~~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 318 (1199)
|...... .......++++.+.+... ..+++-++|+|++...+....+.+...+......+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1110000 000112233333222111 12455679999997666556777777777666667766544 4444
Q ss_pred hhhhh-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHH
Q 000983 319 VSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1199)
Q Consensus 319 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 383 (1199)
+...+ .....+++..++.++....+.+.+-..+.. --.+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-------i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-------VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 43222 233578999999999999888876433221 11356778899999988655443
No 121
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00044 Score=83.72 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
+++||.+.-++.+..++..+. -...+.++|..|+||||+|+.+++...-...+.. + .....-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--~----~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--G----RPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--C----CCCccCHHHHHHh
Confidence 478999999999988886543 3456779999999999999999873211100000 0 0001111222222
Q ss_pred HhcccC-----CCCCCcHHHHH---HHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhh
Q 000983 251 EFHSKM-----EQSTSSISLLE---TRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVS 320 (1199)
Q Consensus 251 ~~~~~~-----~~~~~~~~~l~---~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (1199)
...... .......+.+. +.+... ..+++-++|+|++...+....+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111100 00111222222 222111 1255678999999765555667777777655556666665543 3333
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHH
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 385 (1199)
.. ......++++.++.++....+.+.+...+.. --.+.+..|++.++|.+..+...-.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-------i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-------LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 2223577889999999888888776543321 1145678899999998865554433
No 122
>CHL00181 cbbX CbbX; Provisional
Probab=97.88 E-value=0.00052 Score=74.75 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=85.5
Q ss_pred ccccchhhHHHHHHHH---hCC------CCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 172 NVFGRDDDKERILHML---LSD------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L---~~~------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
.++|.+..+++|.++. .-. ..........+.++|.+|+||||+|+.+++.....+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 4678776666554332 110 101112233577999999999999999987321111112223555542
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc---------CccChHHHHHhhhCCCCCcEEEEe
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE---------DYRKWEPLQQLLKQGHKGSRVLVT 313 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 313 (1199)
.++..... + . ........+.+. .+ -+|++|++... ..+..+.+...+.....+.+||++
T Consensus 100 ~~l~~~~~---g-~-----~~~~~~~~l~~a-~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~a 167 (287)
T CHL00181 100 DDLVGQYI---G-H-----TAPKTKEVLKKA-MG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFA 167 (287)
T ss_pred HHHHHHHh---c-c-----chHHHHHHHHHc-cC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12221111 1 1 111122223322 22 48999999642 112223444455544455677777
Q ss_pred cCCchhhhhh--------cCCCceeCCCCChhHHHHHHHHHhcCC
Q 000983 314 SRTARVSQIM--------GIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1199)
Q Consensus 314 tR~~~v~~~~--------~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1199)
+....+...+ .....+.+++++.+|..+++...+-..
T Consensus 168 g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 7543332111 123468899999999999988877543
No 123
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.87 E-value=5.6e-05 Score=83.38 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=61.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC--CChHHHHHHHHHhcccCCCCCCcH------HHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YDLPRILKGMIEFHSKMEQSTSSI------SLLET 268 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~------~~l~~ 268 (1199)
.-..++|+|.+|+|||||++.+++.... .+|+..+||.+.+. .++.++++.+...+-....+.... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999995433 37999999999966 788999998865433222221111 11111
Q ss_pred HHHHH-hCCCeEEEEEecCC
Q 000983 269 RLLEF-LTGQRFLLVLDDVW 287 (1199)
Q Consensus 269 ~l~~~-l~~k~~LlVlDdvw 287 (1199)
..... -.+++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 11111 36899999999993
No 124
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.86 E-value=3.5e-06 Score=98.23 Aligned_cols=103 Identities=28% Similarity=0.349 Sum_probs=57.9
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
.+..++.+.+..|.+..+-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++|. +..+. .+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhhee
Confidence 344444555555555554444566666666666666666665445666666666666665 33332 4555555666666
Q ss_pred ccccccccccCCCCcCCccccCccCeEEe
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
.+|.+..+ .++..+++|+.+++.++
T Consensus 148 ~~N~i~~~----~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 148 SGNLISDI----SGLESLKSLKLLDLSYN 172 (414)
T ss_pred ccCcchhc----cCCccchhhhcccCCcc
Confidence 66655444 33334566666666554
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00026 Score=84.64 Aligned_cols=201 Identities=14% Similarity=0.113 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEE-----EecCCCChHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWV-----CVTVDYDLPRI 245 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-----~~~~~~~~~~~ 245 (1199)
.++||.+.-+..+.+++..+. -...+.++|+.|+||||+|+.+++.-.-...++...|. .+....+-..+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 568899998998888886543 24567899999999999999988742211111100111 11111111111
Q ss_pred HHHHHHhcc-cCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE-ecCCchh
Q 000983 246 LKGMIEFHS-KMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARV 319 (1199)
Q Consensus 246 ~~~i~~~~~-~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v 319 (1199)
....--.+. .........+++...+... ..+++-++|+|+++..+....+.+...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 000000000 0000112233333322221 234556889999976655567778888776555566554 4444444
Q ss_pred hhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHH
Q 000983 320 SQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAI 383 (1199)
Q Consensus 320 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 383 (1199)
... ......+++.+++.++....+.+.+...+.. -..+.++.|++.++|.. .|+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-------I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-------IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 432 2334688999999999887777665432210 11466788999999855 344433
No 126
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00055 Score=82.20 Aligned_cols=192 Identities=14% Similarity=0.142 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEec-------CCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT-------VDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-------~~~~~~ 243 (1199)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++...-....+ .+-.+. ..++.-
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHHHhhcCCCcEE
Confidence 468899999999999997643 355677999999999999999986311111000 000000 000000
Q ss_pred HHHHHHHHhcccCC-CCCCcHHHHHHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEE-EecCCchhh
Q 000983 244 RILKGMIEFHSKME-QSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL-VTSRTARVS 320 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~-~~~~~~~~l~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~ 320 (1199)
.+.... .....+..+.+.+... ..+++-++|+|++.......+..+...+........+| +|++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000000 0011122233222211 23566699999997766667777877776555555544 555545554
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHHH
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIA 384 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 384 (1199)
.. ......+++.+++.++..+.+...+-..+.. ...+.+..|++.++|-+ .|+..+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-------id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-------YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 2334588999999999988888765433211 11345778999998866 4444443
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.82 E-value=0.00015 Score=83.10 Aligned_cols=161 Identities=13% Similarity=0.124 Sum_probs=90.7
Q ss_pred CCccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
.+++.|++..++++.+.+...-. -+-...+-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 35788999999999877632110 01123456889999999999999999983 3222 333321
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc-----------CccChHHHHHhhhC-----CCC
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-----------DYRKWEPLQQLLKQ-----GHK 306 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~~-----~~~ 306 (1199)
..+.... . ......+...+...-...+.+|++||++.- +......+...+.. ...
T Consensus 199 ~~l~~~~---~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELVQKF---I------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHhHhh---c------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111110 0 111112222222222356789999999632 01112233333321 123
Q ss_pred CcEEEEecCCchhhhh-h----cCCCceeCCCCChhHHHHHHHHHhcCC
Q 000983 307 GSRVLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1199)
Q Consensus 307 gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1199)
+.+||.||...+.... + ..+..+++...+.++..++|+.++...
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM 318 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC
Confidence 5678888875433221 1 123578899999999999999877543
No 128
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.2e-05 Score=57.56 Aligned_cols=40 Identities=38% Similarity=0.472 Sum_probs=31.4
Q ss_pred CcccEEecCCCCCcccCcccccCccccEEeccCCCccccc
Q 000983 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLP 630 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp 630 (1199)
++|++|++++|+|+.+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888888888888887888888888888888887665
No 129
>PRK06620 hypothetical protein; Validated
Probab=97.81 E-value=0.00058 Score=70.90 Aligned_cols=136 Identities=16% Similarity=0.068 Sum_probs=80.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
+.+.|+|++|+|||+|++++++... . .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5688999999999999999887431 1 1111 00000 0 001 123
Q ss_pred EEEEEecCCCcCccChHHHHHhhhC-CCCCcEEEEecCCch-------hhhhhcCCCceeCCCCChhHHHHHHHHHhcCC
Q 000983 279 FLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSRTAR-------VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1199)
-++++||+..... ..+...+.. ...|..||+|++... ....+....++++++++.++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788999952211 122222211 135668999988532 23344555689999999999888888776432
Q ss_pred CCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 351 GNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
+- .--+++.+-|++++.|---.+.-
T Consensus 164 ~l-------~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 164 SV-------TISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred CC-------CCCHHHHHHHHHHccCCHHHHHH
Confidence 11 11256777888888766544443
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.81 E-value=0.00022 Score=74.05 Aligned_cols=184 Identities=14% Similarity=0.146 Sum_probs=115.1
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEE-EEecCCCChHHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMW-VCVTVDYDLPRILKG 248 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~~~~~~~~~~~~ 248 (1199)
-++++|-+..+..+.+.+... .......+|++|.|||+-|+++++...-.+.|++++- .++|...... +.+.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 357889999999998888763 3678889999999999999999875444456766542 2333322111 1100
Q ss_pred HHHhcccCCCCCCcHHHHHHHHHHHh--CCCe-EEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhhhhh-
Q 000983 249 MIEFHSKMEQSTSSISLLETRLLEFL--TGQR-FLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQIM- 323 (1199)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~l--~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~- 323 (1199)
= ..+.+.+........ ..++ -.+|||+++....+.|..+...+......+|.|..+-. ..+....
T Consensus 108 K----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 K----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred h----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0 011111110000000 1223 37899999988889999999999887777775544433 2222111
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
.....|..++|.+++...-+...+-..+.. -..+..+.|++.++|--
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~-------~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVD-------IDDDALKLIAKISDGDL 224 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCcH
Confidence 122467889999999999888887554432 12456778999988754
No 131
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.79 E-value=0.0005 Score=74.49 Aligned_cols=160 Identities=11% Similarity=0.134 Sum_probs=81.9
Q ss_pred ccccchhhHHHHHHH---HhC------CCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 172 NVFGRDDDKERILHM---LLS------DEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~---L~~------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
.++|.+..+++|.+. ... ..........-+.++|++|+||||+|+.+++...-...-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478888777666433 211 1111123455677999999999999999987321111111122333322
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC--------ccChHHHHHhhhCCCCCcEEEEec
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED--------YRKWEPLQQLLKQGHKGSRVLVTS 314 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTt 314 (1199)
.++.... . ......+...+.+. . .-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~~~~---~------g~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVGEY---I------GHTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhhhh---c------cchHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111110 0 11112222333222 2 2488999996421 112233444444333334555665
Q ss_pred CCchh----------hhhhcCCCceeCCCCChhHHHHHHHHHhcC
Q 000983 315 RTARV----------SQIMGIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1199)
Q Consensus 315 R~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1199)
..... ...+ ...++++.++.++-.+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHH
Confidence 43222 1111 245788999999999999877754
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.0011 Score=77.66 Aligned_cols=194 Identities=12% Similarity=0.134 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
+++||-+.-++.+...+..+. -..++.++|..|+||||+|+.+++...-...-+. -.+....+- +.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~---~pC~~C~~C----~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS---TPCDTCIQC----QSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC---CCCcccHHH----HHHh
Confidence 468999988899988886543 3557789999999999999988763110000000 000000000 0000
Q ss_pred Hhc-----ccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhh
Q 000983 251 EFH-----SKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVS 320 (1199)
Q Consensus 251 ~~~-----~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 320 (1199)
... ..........+.+.+.+... ..+++-++|+|++...+.+....+...+......+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 000 00000011233333333221 12456689999998776667777888887666667777666543 222
Q ss_pred h-hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHH
Q 000983 321 Q-IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1199)
Q Consensus 321 ~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 383 (1199)
. .......+++.+++.++....+...+-..+.. -..+.++.|++.++|.+--+..+
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-------i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-------YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCcHHHHHHH
Confidence 1 12223578999999999988887766443321 12456778999999988544444
No 133
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.77 E-value=0.00072 Score=73.78 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=73.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeE
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRF 279 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~ 279 (1199)
-+.++|.+|+||||+|+.++......+.....-|+.++. .++ ...+.+. ........+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~-----~~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGH-----TAPKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhccc-----chHHHHHHHHHc---cCc
Confidence 577999999999999988876322122222223555542 122 2111111 112222333332 235
Q ss_pred EEEEecCCCc---------CccChHHHHHhhhCCCCCcEEEEecCCchhhhhh--------cCCCceeCCCCChhHHHHH
Q 000983 280 LLVLDDVWNE---------DYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIM--------GIRSPYLLEYLPEDQCWSI 342 (1199)
Q Consensus 280 LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 342 (1199)
+|+||++... ..+.++.+...+.....+.+||+++-........ .....+++.+++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999522 1122345555665555566777776543222111 1134688999999999999
Q ss_pred HHHHhcC
Q 000983 343 FKKIAFN 349 (1199)
Q Consensus 343 f~~~a~~ 349 (1199)
+...+-.
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 8887643
No 134
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00084 Score=79.76 Aligned_cols=202 Identities=15% Similarity=0.152 Sum_probs=114.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH--
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG-- 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-- 248 (1199)
+++||.+.-++.+..++..+. -...+.++|+.|+||||+|+.+++...-....+ +-.+....+-..+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccHHHHHhhcccC
Confidence 568999999999999987543 355678999999999999999987321111000 0001111000000000
Q ss_pred -HHHhcccCCCCCCcHHH---HHHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE-ecCCchhhhh
Q 000983 249 -MIEFHSKMEQSTSSISL---LETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARVSQI 322 (1199)
Q Consensus 249 -i~~~~~~~~~~~~~~~~---l~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~ 322 (1199)
-.+-+.........++. +.+.+... ..+++-++|+|++...+....+.+...+........+|+ ||....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 00000000000112222 22222111 135566899999987776777888888876555666555 5444444432
Q ss_pred -hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHHHHhh
Q 000983 323 -MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAGFL 387 (1199)
Q Consensus 323 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 387 (1199)
......+++..++.++..+.+.+.+...+.. -..+....|++.++|-+ -|+..+-.++
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-------i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVV-------VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2334678999999999888887766443221 11355677888999876 4555444433
No 135
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.76 E-value=6.7e-06 Score=86.34 Aligned_cols=241 Identities=20% Similarity=0.216 Sum_probs=156.6
Q ss_pred cccccCccccEEeccCCCcc-----ccchhhcccCcccEEecCCCC---cccccchhh-------ccccccceeeccccc
Q 000983 608 DSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCI---WIMELPKDL-------ANLVKLRNLELEEMF 672 (1199)
Q Consensus 608 ~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~---~l~~lp~~i-------~~L~~L~~L~l~~n~ 672 (1199)
+.+..+..+.+|+|++|.+. .+-+.+.+.++|+..++++-- ...++|+.+ ..+++|+.|+||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 33566788999999999875 455678888899999998531 223455543 456799999999996
Q ss_pred ccccccCC---CCcCCccccCccCeEEecccCc--CCh-hhhcCCCCCCCceeeCCccccccccccccccccccceeEEE
Q 000983 673 WFKCSTLP---AGIGKLTNLHNLHVFRVGSKSG--YRI-EELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1199)
Q Consensus 673 ~~~~~~lp---~~i~~l~~L~~L~l~~~~~~~~--~~~-~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~ 746 (1199)
+.. ..++ .-+.+++.|++|.+.+|+.... ..+ ..|..|. ..........|+.+...
T Consensus 104 ~G~-~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-----------------~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 104 FGP-KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA-----------------VNKKAASKPKLRVFICG 165 (382)
T ss_pred cCc-cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-----------------HHhccCCCcceEEEEee
Confidence 631 1211 2346788999999987642211 110 1111111 11223455678888887
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCC--C---CcccccCccCceeEEEEeCccCcccc-----
Q 000983 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNS--L---PQWMRDGRLQNLVSLTLKGCTNCRIL----- 816 (1199)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~---p~~~~~~~l~~L~~L~L~~~~~~~~~----- 816 (1199)
.|..... .-..+-..++.++.|+.+.+..|.+.. + -..+ ..+++|+.|+|.+|.+....
T Consensus 166 rNrlen~---------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal--~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 166 RNRLENG---------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEAL--EHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred ccccccc---------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHH--HhCCcceeeecccchhhhHHHHHHH
Confidence 7765422 222344566777899999998654321 1 1112 46899999999999887654
Q ss_pred -CcCCcCCcCeEEecCCCCceecC------CC-CCcccccccccCCCCCCCcCC-------CcCCCcCeEEEecccc
Q 000983 817 -SLGQLSSLRVLNIKGMLELEKWP------ND-EDCRFLGRLKISNCPRLNELP-------ECMPNLTVMKIKKCCS 878 (1199)
Q Consensus 817 -~l~~l~~L~~L~L~~~~~~~~~~------~~-~~~~~L~~L~l~~~~~l~~~~-------~~~~~L~~L~l~~c~~ 878 (1199)
.+..+|+|+.|++++|..- .-+ .+ ...++|+.+.+.+|.....-. ...|.|..|.+.+|.-
T Consensus 235 kaL~s~~~L~El~l~dcll~-~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLE-NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccc-cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6778999999999998432 111 11 347899999999987643211 1478889999888753
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.76 E-value=0.00076 Score=78.40 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=92.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccc--eeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFE--SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
...+.|+|..|+|||+||+++++. +.+... .++++++ .++...+...+... ..+.+...+ +
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~~~~----~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFKEKY----R 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHHHHH----H
Confidence 346789999999999999999984 333322 3345533 33344444443321 223333333 2
Q ss_pred CCeEEEEEecCCCcCccCh--HHHHHhhhCC-CCCcEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHHH
Q 000983 276 GQRFLLVLDDVWNEDYRKW--EPLQQLLKQG-HKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIF 343 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1199)
. .-+|||||+.......+ +.+...+... ..|..||+|+... .+...+.....+++++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 23889999964322111 2333333221 2345688887642 12233333457889999999999999
Q ss_pred HHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
.+.+...+. .--+++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~-------~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGL-------ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCC-------CCCHHHHHHHHHhcCCCHHHHH
Confidence 988754322 1125677788888888765443
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0007 Score=83.79 Aligned_cols=195 Identities=13% Similarity=0.132 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH--
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG-- 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-- 248 (1199)
.++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++...-....... .+....+-..+...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHHHHHHHcCCC
Confidence 468999999999999987643 34567899999999999999998742211111000 00000000000000
Q ss_pred -HHHhcccCCCCCCcHHHHHH---HHH-HHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEec-CCchhhhh
Q 000983 249 -MIEFHSKMEQSTSSISLLET---RLL-EFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTARVSQI 322 (1199)
Q Consensus 249 -i~~~~~~~~~~~~~~~~l~~---~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 322 (1199)
-.+-+.........++++.+ .+. .-..++.-++|||+++..+...++.|...+......+.+|++| ....+...
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00000000000112222222 111 1123555688999998877777888888887766666666555 44444433
Q ss_pred -hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 323 -MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 323 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
......|++..++.++..+.+.+.+-..+. ....+....|++.++|.+..+
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-------~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGV-------PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHH
Confidence 233467899999999988888775532221 111345678899999977433
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0013 Score=76.94 Aligned_cols=184 Identities=12% Similarity=0.131 Sum_probs=108.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc--cc-----------------cccee
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV--RE-----------------HFESR 231 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-----------------~F~~~ 231 (1199)
.+++|.+.-+..+..++.... -...+.++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899999999999987643 3456778999999999999998873210 00 01111
Q ss_pred EEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEE
Q 000983 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1199)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1199)
+++..+.... .++...+.+.+... ..+++-++|+|+++..+....+.+...+........+
T Consensus 91 ~eidaas~~g------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRG------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCC------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1111111100 11112222222111 2356679999999766555567777777655545555
Q ss_pred EEe-cCCchhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 311 LVT-SRTARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 311 ivT-tR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
|++ |+...+... ......+++.+++.++....+...+-..+.. ...+.+..|++.++|.+-.+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-------id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-------YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 443333322 2233578899999999888888766433211 113556778888998765444433
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0011 Score=80.12 Aligned_cols=176 Identities=12% Similarity=0.145 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc---------------------ccccc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV---------------------REHFE 229 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 229 (1199)
++++|.+..++.+..++..+. -.+.+.++|..|+||||+|+.++....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999987643 3556889999999999999988873210 01222
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCC
Q 000983 230 SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH 305 (1199)
Q Consensus 230 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~ 305 (1199)
. ..+..... ...+.+...+.+. ..+++-++|+|++...+...++.+...+....
T Consensus 92 ~-~~ld~~~~---------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASN---------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEeccccc---------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 11111111 1122222222111 12455688999998766667788888887655
Q ss_pred CCcEEEE-ecCCchhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 306 KGSRVLV-TSRTARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 306 ~gs~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
.++.+|+ ||+...+... ......+++.+++.++....+.+.+-..+.. -..+.+..|++.++|-.--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-------i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-------AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 6666555 5454555433 2334678999999999998888766543321 11356778999999866433
No 140
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=1.2e-06 Score=99.79 Aligned_cols=108 Identities=27% Similarity=0.305 Sum_probs=52.8
Q ss_pred HHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhcccccc
Q 000983 585 KIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKL 663 (1199)
Q Consensus 585 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 663 (1199)
..+.-++.|+.|||++|+++..- .+..|.+|+.|||++|.+..+|. +...++ |+.|++++|. +..+ .+|.+|.+|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhh
Confidence 33444455555555555555443 45555555555555555555554 223333 5555555554 3333 245555555
Q ss_pred ceeecccccccccccCCCCcCCccccCccCeEEe
Q 000983 664 RNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 664 ~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
++||+++|-+..-..+ ..++.|..|..|++-+|
T Consensus 257 ~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hccchhHhhhhcchhh-hHHHHHHHHHHHhhcCC
Confidence 5555555544332222 22344455555555443
No 141
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.001 Score=77.47 Aligned_cols=182 Identities=15% Similarity=0.185 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc---------------------ccc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE---------------------HFE 229 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~ 229 (1199)
++++|.+..++.+..++..+. -...+.++|..|+||||+|+.+++...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 568999999999999987543 246678999999999999999987321110 111
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHH-HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCc
Q 000983 230 SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGS 308 (1199)
Q Consensus 230 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 308 (1199)
.+++........ +++..+.+.+.. -..+++-++|+|++...+....+.+...+.......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 011110000001 111111221111 123566789999996555445566777776655566
Q ss_pred EEEEecC-Cchhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHH
Q 000983 309 RVLVTSR-TARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAI 383 (1199)
Q Consensus 309 ~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 383 (1199)
.+|++|. ...+... ......+++.++++++..+.+...+-..+. .-..+.+..|++.++|.+ .|+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-------~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-------ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666653 3333322 223457899999999988888776643221 112456788999999966 444443
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.0018 Score=75.15 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=87.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
..-+.|+|..|+|||+||+++++. +...-..+++++. ..+...+...+... .. ..+++..+ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356789999999999999999984 3322233344432 33344444443311 11 22333333 3
Q ss_pred eEEEEEecCCCcCccC--hHHHHHhhhCC-CCCcEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHHHHH
Q 000983 278 RFLLVLDDVWNEDYRK--WEPLQQLLKQG-HKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIFKK 345 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (1199)
.-+|++||+....... .+.+...+... ..|..||+||... .+...+.....+++.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 3488889995432211 13333333211 2355788888542 2333344456889999999999999988
Q ss_pred HhcCCCCCCccccchhHHHHHHHHHHhcCCC
Q 000983 346 IAFNQGNFSSRMQQQNLEAIGREIVGKCKGL 376 (1199)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 376 (1199)
.+-..+-. --+++..-|++.+.|.
T Consensus 283 k~~~~~~~-------l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIR-------IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCC-------CCHHHHHHHHHhcCCC
Confidence 77543211 1135555666666543
No 143
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0016 Score=78.67 Aligned_cols=197 Identities=11% Similarity=0.083 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|.+.-+..+..++.... -...+.++|..|+||||+|+.+++...-. ..+....-.+. .-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~~~Cg----~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTPEPCG----KCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCCCCCc----ccHHHHHHh
Confidence 468899999999998887643 23467799999999999999998742111 11000000011 011111221
Q ss_pred Hhccc-----CCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhh
Q 000983 251 EFHSK-----MEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVS 320 (1199)
Q Consensus 251 ~~~~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (1199)
..... .......++.+.+.+... ..+++-++|+|+++..+...++.+...+........+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11000 000112233333332211 1245568999999776656677788777755455555544443 3333
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
.. ......+++..++.++....+.+.+...+.. --.+.+..|++.++|.+..+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-------is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-------IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 2233567888999988888777766432211 113557789999999875554433
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.66 E-value=0.00045 Score=86.22 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=84.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc---ccccc-ceeEEEEecCCCChHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER---VREHF-ESRMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 246 (1199)
+.++||+.++++++..|.... ..-+.++|.+|+|||++|+.+++... +...+ +..+|. +. ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh
Confidence 478999999999999886543 22345899999999999999997321 11111 233332 11 11111
Q ss_pred HHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC---------ccChHHHHHhhhCCCCC-cEEEEecCC
Q 000983 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED---------YRKWEPLQQLLKQGHKG-SRVLVTSRT 316 (1199)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~g-s~iivTtR~ 316 (1199)
. . ......-.+.+...+.+.-+.++.+|++|+++.-. .+.-+.+...+. .| -++|-+|..
T Consensus 251 a----~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~ 320 (731)
T TIGR02639 251 A----G---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTY 320 (731)
T ss_pred h----h---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCH
Confidence 0 0 00001111222222322223467899999996321 011223333333 23 344544443
Q ss_pred chhhh-------hhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 317 ARVSQ-------IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 317 ~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
.+... .......+++++++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22111 11223578999999999999998655
No 145
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=1.8e-05 Score=80.92 Aligned_cols=87 Identities=23% Similarity=0.242 Sum_probs=61.1
Q ss_pred hccCCcccEEecCCCCCcc---cCcccccCccccEEeccCCCccccchhh-cccCcccEEecCCCCcc-cccchhhcccc
Q 000983 587 FHQLKYLRLLDLSSSTLTV---LPDSVEELKLLRYLDLSRTEIKVLPNSI-CNLYNLQTLKLIGCIWI-MELPKDLANLV 661 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~---lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l-~~lp~~i~~L~ 661 (1199)
=..++.++.|||.+|.|+. +-.-+.+|++|++|+|+.|.+...-.+. -.+.+|++|-|.+..+- ...-+.+..++
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3457888899999998873 4344668899999999998765332222 35678889988876533 23344567788
Q ss_pred ccceeecccccc
Q 000983 662 KLRNLELEEMFW 673 (1199)
Q Consensus 662 ~L~~L~l~~n~~ 673 (1199)
+++.|+++.|.+
T Consensus 147 ~vtelHmS~N~~ 158 (418)
T KOG2982|consen 147 KVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhccchh
Confidence 888888887743
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.0014 Score=77.11 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=92.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhccccccccc--ceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCC
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHF--ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~ 276 (1199)
..+.|+|..|+|||.|++++++. ....+ ..+++++. .++..++...+.. ...+. +++.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~-----~~~~~----f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRD-----GKGDS----FRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHh-----ccHHH----HHHHhhc
Confidence 35889999999999999999983 33322 23344443 3344444433321 11222 2232332
Q ss_pred CeEEEEEecCCCcCc-cCh-HHHHHhhhCC-CCCcEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHHHH
Q 000983 277 QRFLLVLDDVWNEDY-RKW-EPLQQLLKQG-HKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1199)
Q Consensus 277 k~~LlVlDdvw~~~~-~~~-~~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1199)
-=+|||||+..... ..| +.+...+... ..|..|||||+.. ++...+.....++++..+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24788999964322 122 2333333321 2355688888752 344556667789999999999999999
Q ss_pred HHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
+++....-. --+++..-|++.+.+..-.+
T Consensus 457 kka~~r~l~-------l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQLN-------APPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCCC-------CCHHHHHHHHHhccCCHHHH
Confidence 887543221 12466777777777664433
No 147
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.63 E-value=0.00084 Score=71.97 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=103.5
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
+..+.+|+.++..+..++.... ..-+.+|-|.|-.|.|||.+.+++.+... -..+|+++-..++.+.++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 3567899999999999887654 23456678999999999999999998542 234899999999999999999
Q ss_pred HHhcccCCCCC-------CcHHHHHHHHHH--Hh--CCCeEEEEEecCCCcCccChHH-HHHhh---h-CCCCCcEEEEe
Q 000983 250 IEFHSKMEQST-------SSISLLETRLLE--FL--TGQRFLLVLDDVWNEDYRKWEP-LQQLL---K-QGHKGSRVLVT 313 (1199)
Q Consensus 250 ~~~~~~~~~~~-------~~~~~l~~~l~~--~l--~~k~~LlVlDdvw~~~~~~~~~-l~~~l---~-~~~~gs~iivT 313 (1199)
+........+. .........+.+ .. +++.++||||+++.- .+.+. +.+.+ . -.....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99885222221 122223333333 12 256899999999532 22221 11111 1 11122334444
Q ss_pred cCCc--hh-hhhhcCCC--ceeCCCCChhHHHHHHHHH
Q 000983 314 SRTA--RV-SQIMGIRS--PYLLEYLPEDQCWSIFKKI 346 (1199)
Q Consensus 314 tR~~--~v-~~~~~~~~--~~~l~~L~~~~~~~lf~~~ 346 (1199)
+-.. .. ...++... ++....-+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4322 11 12234444 3456777888888887653
No 148
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0017 Score=75.55 Aligned_cols=160 Identities=17% Similarity=0.132 Sum_probs=93.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhccccccccc-c-eeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHF-E-SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..-+.|+|.+|+|||+||+++++. +.+.. . .++|++. .++..++...+.. ...+. +.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~-----~~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKE-----GKLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhc-----ccHHH----HHHHHH
Confidence 345889999999999999999983 33332 2 3455543 3445555544431 12222 223333
Q ss_pred CCeEEEEEecCCCcC-ccCh-HHHHHhhhC-CCCCcEEEEecC-Cch--------hhhhhcCCCceeCCCCChhHHHHHH
Q 000983 276 GQRFLLVLDDVWNED-YRKW-EPLQQLLKQ-GHKGSRVLVTSR-TAR--------VSQIMGIRSPYLLEYLPEDQCWSIF 343 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~-~~~~-~~l~~~l~~-~~~gs~iivTtR-~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1199)
.+.-+||+||+.... ...+ +.+...+.. ...|..||+||. .+. +...+.....+++++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999996321 1111 233333321 123457888885 221 2223444557889999999999999
Q ss_pred HHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
.+.+..... .--+++..-|++.+.|.--.+.
T Consensus 273 ~~~~~~~~~-------~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHG-------ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCC-------CCCHHHHHHHHhccccCHHHHH
Confidence 888753221 1124677888888887654443
No 149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.62 E-value=0.0016 Score=76.71 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=93.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccc--eeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFE--SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..-+.|+|..|+|||+||+++++ .+...+. .+++++.. ++...+...+.. ...+.+ .+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~-----~~~~~~----~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRN-----NTMEEF----KEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHc-----CcHHHH----HHHHh
Confidence 35678999999999999999998 4444432 23444432 233334333321 112222 33333
Q ss_pred CCeEEEEEecCCCcCccC--hHHHHHhhhC-CCCCcEEEEecCCch---------hhhhhcCCCceeCCCCChhHHHHHH
Q 000983 276 GQRFLLVLDDVWNEDYRK--WEPLQQLLKQ-GHKGSRVLVTSRTAR---------VSQIMGIRSPYLLEYLPEDQCWSIF 343 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~--~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1199)
+.-+||+||+....... .+.+...+.. ...|..||+||.... +...+.....+++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 23489999996432111 1233333321 123455888876431 2334444567899999999999999
Q ss_pred HHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
.+.+-..+. .--+++..-|++.++|..-.+.
T Consensus 290 ~~~~~~~~~-------~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGI-------DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCC-------CCCHHHHHHHHcCcCCCHHHHH
Confidence 988754321 1124678889999988876443
No 150
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.002 Score=71.11 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc-------------ccccceeEEEEec
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-------------REHFESRMWVCVT 237 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~~ 237 (1199)
.+++|.+..++.+...+..+. -....-++|..|+||+++|.++++..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 467899999999999987653 2468899999999999999888763111 1122233444321
Q ss_pred CCCChHHHHHHHHHhccc--CCCCCCcHHHHHHHHHHHh-----CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEE
Q 000983 238 VDYDLPRILKGMIEFHSK--MEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1199)
Q Consensus 238 ~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1199)
...+...+-..-++..+. .....-.++++. .+.+.+ .+++-++|+|++...+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 111111011111111110 111112223322 233332 3567789999997776667777888886555 4455
Q ss_pred EEec-CCchhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 311 LVTS-RTARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 311 ivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
|++| +...+... ......+.+.++++++..+.+.+...... .......++..++|.|..+..+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----------chhHHHHHHHHcCCCHHHHHHHH
Confidence 5444 44444332 23346889999999999999887642111 01113578899999997655433
No 151
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.61 E-value=3.7e-06 Score=95.87 Aligned_cols=108 Identities=24% Similarity=0.176 Sum_probs=72.3
Q ss_pred ccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccC
Q 000983 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1199)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1199)
+.-++.+++|.+. .|.+.+.- ++..+..|+.|||++|.+..+|.--..--+|..|+|++|.++.+ ..+.+|.
T Consensus 183 Lqll~ale~LnLs-----hNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~Lk 254 (1096)
T KOG1859|consen 183 LQLLPALESLNLS-----HNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLK 254 (1096)
T ss_pred HHHHHHhhhhccc-----hhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhh
Confidence 4445667777766 45554443 67788888888888888887775321122388888888888777 3577888
Q ss_pred cccEEecCCCCcccc-cchhhccccccceeecccccc
Q 000983 638 NLQTLKLIGCIWIME-LPKDLANLVKLRNLELEEMFW 673 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l~~n~~ 673 (1199)
+|+.||+++|-+.+. --.-++.|..|+.|+|.+|.+
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 888888887753311 112457778888888888754
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.61 E-value=0.00062 Score=85.50 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=85.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc------cceeEE-EEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH------FESRMW-VCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~~~~~~~~ 243 (1199)
+.+|||+.++.+++..|.... ..-+.++|.+|+||||+|+.++.. +... .+..+| +..+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l---- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL---- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh----
Confidence 578999999999999886653 223459999999999999999973 3211 112222 222110
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHh-CCCeEEEEEecCCCcC-------ccChH-HHHHhhhCCCCCcEEEEec
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNED-------YRKWE-PLQQLLKQGHKGSRVLVTS 314 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~~~-~l~~~l~~~~~gs~iivTt 314 (1199)
.........-.+.+...+.+.- .+++.+|++|++..-. ..+.. .+...+..+ .-++|-||
T Consensus 255 ---------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaT 323 (852)
T TIGR03345 255 ---------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAAT 323 (852)
T ss_pred ---------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEec
Confidence 0000000111122222232221 2568999999996421 11111 233333221 24566665
Q ss_pred CCchhhh-------hhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 315 RTARVSQ-------IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 315 R~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
...+... .......+.+++++.+++.+++....
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 5432211 11233589999999999999975444
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.58 E-value=0.0027 Score=65.26 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=66.0
Q ss_pred ccCCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 168 IDTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
+.-+.++|.+.+++.+++-...-- ......-+.+||..|.|||++++++.+...-++ . --|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---L-RlIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---L-RLIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---c-eEEEECHH--------
Confidence 345679999999998875433211 112345567899999999999999987322111 1 11222211
Q ss_pred HHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc-CccChHHHHHhhhC
Q 000983 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQ 303 (1199)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~ 303 (1199)
.-.++..+.+.++. +..||+|++||+.-+ +...+..++..|..
T Consensus 90 -----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred -----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 11233334444443 467999999999633 22456777777754
No 154
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.56 E-value=0.0003 Score=67.49 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=53.0
Q ss_pred EEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCC-CeE
Q 000983 201 IPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG-QRF 279 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~-k~~ 279 (1199)
|.|+|++|+||||+|+.++++. ..+ .+.+..+...+ .........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---ccccccccccc---------------ccccccccccccccccccccccce
Confidence 5699999999999999999843 211 13333322110 01122223333333333233 379
Q ss_pred EEEEecCCCcCccC-----------hHHHHHhhhCCC---CCcEEEEecCC
Q 000983 280 LLVLDDVWNEDYRK-----------WEPLQQLLKQGH---KGSRVLVTSRT 316 (1199)
Q Consensus 280 LlVlDdvw~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtR~ 316 (1199)
+|++||++...... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996543333 344455554332 23567777776
No 155
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.55 E-value=0.0003 Score=80.52 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=89.1
Q ss_pred CccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
.++.|.+..++++.+.+.-.-. -.-...+-+.++|++|+|||++|+++++ .....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----
Confidence 4567899988888777642110 0112345677999999999999999998 344334 222111
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC--------ccC---hHHHHHhh---hC--CCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED--------YRK---WEPLQQLL---KQ--GHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~--------~~~---~~~l~~~l---~~--~~~g 307 (1199)
.+... . .......+...+.......+.+|+||+++... ..+ ...+...+ .. ...+
T Consensus 252 eL~~k----~-----~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELIQK----Y-----LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhhhh----h-----cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11110 0 01112223333333335678899999984210 000 11222222 11 1345
Q ss_pred cEEEEecCCchhhhhh-----cCCCceeCCCCChhHHHHHHHHHhcC
Q 000983 308 SRVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1199)
Q Consensus 308 s~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1199)
.+||+||...+..... ..+..+++...+.++..++|..++..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 6788888765443221 22357889999999999999977643
No 156
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0024 Score=76.12 Aligned_cols=197 Identities=12% Similarity=0.032 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|-+.-++.+..++..+. -.+.+.++|+.|+||||+|+.+++...-..... ...+....+-..+.....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHHHHHHcCCC
Confidence 468999999999999997643 355788999999999999999987421111000 000111111111100000
Q ss_pred Hh-cccCCCCCCcHHHHHHHH---HH-HhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecC-Cchhhhh-h
Q 000983 251 EF-HSKMEQSTSSISLLETRL---LE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSR-TARVSQI-M 323 (1199)
Q Consensus 251 ~~-~~~~~~~~~~~~~l~~~l---~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~ 323 (1199)
-. ...........+.+.+.. .. -..+++-++|+|++...+...++.+...+......+.+|.+|. ...+... .
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 00 000000012233332221 11 1235666899999977665667777777766555666665554 3334322 2
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
.....+++.+++.++..+.+.+.+...+.. --.+.+..|++.++|.+-.+..
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~-------id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-------YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHH
Confidence 223468899999999888887766443221 1245667788899987754433
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.54 E-value=0.00064 Score=85.94 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=84.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc---ccccc-ceeEEEEecCCCChHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER---VREHF-ESRMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 246 (1199)
+.++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 468999999999999997543 22345999999999999999987321 11111 233442 1 111111
Q ss_pred HHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc-------CccCh-HHHHHhhhCCCCCcEEEEecCCch
Q 000983 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-------DYRKW-EPLQQLLKQGHKGSRVLVTSRTAR 318 (1199)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~-------~~~~~-~~l~~~l~~~~~gs~iivTtR~~~ 318 (1199)
.+......-.+.+...+.+.-+.++.+|++|+++.- ...+. +-+...+.. + .-++|.+|...+
T Consensus 248 -------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-ELQCIGATTLDE 318 (821)
T ss_pred -------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-CcEEEEeCCHHH
Confidence 111111111222333333333456899999999521 00112 223333322 2 245555555443
Q ss_pred hhhh-------hcCCCceeCCCCChhHHHHHHHHH
Q 000983 319 VSQI-------MGIRSPYLLEYLPEDQCWSIFKKI 346 (1199)
Q Consensus 319 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 346 (1199)
.... ......+.+...+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3211 122346788888988888887653
No 158
>PRK08116 hypothetical protein; Validated
Probab=97.50 E-value=0.00039 Score=74.92 Aligned_cols=104 Identities=24% Similarity=0.354 Sum_probs=60.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
..+.++|.+|+|||+||.++++. +...-..+++++ ..+++..+....... ...+... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~--~~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSS--GKEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcc--ccccHHH----HHHHhcCCC
Confidence 35789999999999999999994 333333445554 334555554443221 1112222 223334333
Q ss_pred EEEEEecCCCcCccChH--HHHHhhhCC-CCCcEEEEecCCc
Q 000983 279 FLLVLDDVWNEDYRKWE--PLQQLLKQG-HKGSRVLVTSRTA 317 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 317 (1199)
||||||+..+...+|. .+...+... ..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 8999999644444553 344444322 3456799999753
No 159
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0032 Score=75.44 Aligned_cols=191 Identities=12% Similarity=0.095 Sum_probs=107.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
++++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++...-...-+. ..+... ..-+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~---~pC~~C----~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG---EPCNEC----EICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCCcc----HHHHHHh
Confidence 568999999999999987653 3567778999999999999999863111100000 000000 0111111
Q ss_pred Hhccc-----CCCCCCcHHHH---HHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE-ecCCchhh
Q 000983 251 EFHSK-----MEQSTSSISLL---ETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARVS 320 (1199)
Q Consensus 251 ~~~~~-----~~~~~~~~~~l---~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~ 320 (1199)
..... ........+.+ .+.+... ..+++-++|+|++.......+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 00000 00001222222 2222111 245667889999976665667777777765444555454 44444443
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
.. ......++..+++.++..+.+...+-..+.. -..+....|++.++|-+.-+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-------i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIE-------YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 22 2233568889999999888888776433211 11355678888888877543
No 160
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.49 E-value=0.0077 Score=75.80 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|.+..+++|.+++.........+..++.++|++|+|||++|+.+++. ....|-. +.++...+..++ .
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~~---i~~~~~~~~~~i----~ 390 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFVR---FSLGGVRDEAEI----R 390 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeEE---EeCCCcccHHHH----c
Confidence 457899999999888664221111123457899999999999999999983 3333322 222222222221 1
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccC----hHHHHHhhhC--------C-------CCCcEEE
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK----WEPLQQLLKQ--------G-------HKGSRVL 311 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 311 (1199)
.. ...........+.+.+...- .++-+|+||+++...... ...+...+.. . ..+.-+|
T Consensus 391 g~--~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 391 GH--RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred CC--CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 10 00111122233344444332 233488999996543211 1223333211 0 0233345
Q ss_pred EecCCch-hhh-hhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 312 VTSRTAR-VSQ-IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 312 vTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
.||.... +.. .......+++.+++.++-.+++..+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554432 111 12333578899999988888877654
No 161
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0025 Score=76.78 Aligned_cols=195 Identities=13% Similarity=0.144 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
+++||.+.-+..+..++..+. -.+.+.++|..|+||||+|+.+++...-....+. -.+... ..-+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c~~c----~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPCNVC----PPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCCCcc----HHHHHHh
Confidence 578999998999999887543 3456789999999999999999873211110000 000000 0000110
Q ss_pred Hh-------cccC-CCCCCcHHHHHHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE-ecCCchhh
Q 000983 251 EF-------HSKM-EQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARVS 320 (1199)
Q Consensus 251 ~~-------~~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~ 320 (1199)
.. +... ....+++..+.+.+... ..+++-++|+|+++..+......+...+......+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 00011122222222111 134556899999977665667778887766555666655 55444454
Q ss_pred hh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHHH
Q 000983 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIA 384 (1199)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 384 (1199)
.. ......++++.++.++....+...+-..+.. -..+....|++.++|.. .|+..+-
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-------i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-------ISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 2233578889999988888777655433211 11355678888988865 4554443
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.003 Score=70.06 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCC
Q 000983 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNF 353 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 353 (1199)
+++-++|+|+++..+......+...+.....++.+|+||.+. .+... ......+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 444456779998877777888888887666677777777764 33322 233457899999999999888765311 1
Q ss_pred CccccchhHHHHHHHHHHhcCCChHHHHHH
Q 000983 354 SSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1199)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 383 (1199)
..+.+..++..++|.|+.+..+
T Consensus 182 --------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --------ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234557789999999765544
No 163
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.0015 Score=72.97 Aligned_cols=137 Identities=19% Similarity=0.152 Sum_probs=84.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCC
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~ 276 (1199)
....+.|||..|.|||.|++++.+ ......+....+.++. .......+..+.. .. .+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~-----~~----~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRD-----NE----MEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHh-----hh----HHHHHHhh--
Confidence 466889999999999999999999 5555555444444432 2333333333221 11 23344433
Q ss_pred CeEEEEEecCCCcCc-cCh-HHHHHhhhC-CCCCcEEEEecCC---------chhhhhhcCCCceeCCCCChhHHHHHHH
Q 000983 277 QRFLLVLDDVWNEDY-RKW-EPLQQLLKQ-GHKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1199)
Q Consensus 277 k~~LlVlDdvw~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1199)
.-=++++||++.-.. +.| +.+...+.. ...|-.||+|++. +++...+...-.+++.+++.+.....+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 233889999964211 112 333333322 1234489999974 3455566777789999999999999998
Q ss_pred HHhcCC
Q 000983 345 KIAFNQ 350 (1199)
Q Consensus 345 ~~a~~~ 350 (1199)
+.+...
T Consensus 255 kka~~~ 260 (408)
T COG0593 255 KKAEDR 260 (408)
T ss_pred HHHHhc
Confidence 876543
No 164
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.39 E-value=0.00074 Score=76.85 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=87.8
Q ss_pred CccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
.++.|.+..++++.+.+...-. .+-...+-+.++|++|+|||++|+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 4688999888888776532100 01123567889999999999999999983 33233 22211 1
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC------c----cCh-HHHHHhhh---C--CCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED------Y----RKW-EPLQQLLK---Q--GHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~------~----~~~-~~l~~~l~---~--~~~g 307 (1199)
.+.... . ......+.+.+.......+.+|++|+++.-- . ... ..+...+. . ...+
T Consensus 214 ~l~~k~---~------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFVQKY---L------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHHh---c------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111111 1 1112223333333345678999999985310 0 011 12222222 1 2245
Q ss_pred cEEEEecCCchhhhh--h---cCCCceeCCCCChhHHHHHHHHHhc
Q 000983 308 SRVLVTSRTARVSQI--M---GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 308 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
..||+||...+..+. . ..+..+++...+.++..++|..+..
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 678888876543321 1 2245688888888888888886654
No 165
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.38 E-value=0.015 Score=72.44 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=91.1
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
+.+.+|.+.-+++|+++|............++.++|++|+||||+|+.++. .....|-. +.++...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccch
Confidence 456889999999999888642211122345899999999999999999997 33333322 2333322322221100
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccC----hHHHHHhhhCC---------------CCCcEE
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK----WEPLQQLLKQG---------------HKGSRV 310 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~i 310 (1199)
.... ......+...+.+. ....-+++||.++....+. .+.+...+... -.+.-+
T Consensus 396 ~~~~------g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYI------GSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccC------CCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 0000 11122333334332 2234478999997544321 24455444321 133344
Q ss_pred EEecCCchhhhh-hcCCCceeCCCCChhHHHHHHHHHh
Q 000983 311 LVTSRTARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 311 ivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
|.|+....+... .+....+++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 556655433222 2333578888999888888777665
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.37 E-value=0.001 Score=64.82 Aligned_cols=88 Identities=24% Similarity=0.113 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC-
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ- 277 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k- 277 (1199)
..+.|+|.+|+||||+|+.++.. .......++++..+........... ................. ..+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRL-RLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHH-HHHHHHHHhcC
Confidence 47889999999999999999983 3322223455554443322222111 00111111112222222 2333333333
Q ss_pred eEEEEEecCCCcC
Q 000983 278 RFLLVLDDVWNED 290 (1199)
Q Consensus 278 ~~LlVlDdvw~~~ 290 (1199)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997643
No 167
>PF14516 AAA_35: AAA-like domain
Probab=97.36 E-value=0.0069 Score=67.89 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=115.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC-----CChHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-----YDLPRI 245 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~ 245 (1199)
.-.|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..+ .++++++..- .+....
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 34678885666666666542 248899999999999999999874322 233 3457776642 234555
Q ss_pred HHHHHHh----cccCCCC-------CCcHHHHHHHHHHHh---CCCeEEEEEecCCCcCc--cChHHHHHhhh----CCC
Q 000983 246 LKGMIEF----HSKMEQS-------TSSISLLETRLLEFL---TGQRFLLVLDDVWNEDY--RKWEPLQQLLK----QGH 305 (1199)
Q Consensus 246 ~~~i~~~----~~~~~~~-------~~~~~~l~~~l~~~l---~~k~~LlVlDdvw~~~~--~~~~~l~~~l~----~~~ 305 (1199)
++.+... +...... ..........+.+.+ .+++.+|++|+|+..-. .-.+++...+. ...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5555544 3322110 111122233333332 26899999999964221 11123333332 111
Q ss_pred ----CCc-E-EEEec-CCchhhh----hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcC
Q 000983 306 ----KGS-R-VLVTS-RTARVSQ----IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCK 374 (1199)
Q Consensus 306 ----~gs-~-iivTt-R~~~v~~----~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~ 374 (1199)
... + |++.+ +...... .+.....++|.+++.+|..+|...+-..-. ....++|...+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----------~~~~~~l~~~tg 230 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----------QEQLEQLMDWTG 230 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----------HHHHHHHHHHHC
Confidence 111 1 22222 2111111 123345788999999999999887643211 123789999999
Q ss_pred CChHHHHHHHHhhccC
Q 000983 375 GLPLAVKAIAGFLRKY 390 (1199)
Q Consensus 375 glPLai~~~~~~l~~~ 390 (1199)
|+|.-+..++..+...
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999763
No 168
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.35 E-value=0.0018 Score=75.38 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=88.6
Q ss_pred CccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc-----cceeEEEEecC
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-----FESRMWVCVTV 238 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~ 238 (1199)
.++.|.+..++++.+.+...-. ..-...+-+.++|++|+|||++|+++++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4577899999888777542100 01123445789999999999999999984 3222 12234444332
Q ss_pred CCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHH-hCCCeEEEEEecCCCcC-------ccCh-----HHHHHhhhCC-
Q 000983 239 DYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNED-------YRKW-----EPLQQLLKQG- 304 (1199)
Q Consensus 239 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdvw~~~-------~~~~-----~~l~~~l~~~- 304 (1199)
. +++.... + . .......+....++. -.+++.+|+||+++..- ..+. ..+...+...
T Consensus 260 ~----eLl~kyv---G-e--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----ELLNKYV---G-E--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hhccccc---c-h--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 1111000 0 0 000111122222221 13578999999996311 0111 1233333221
Q ss_pred -CCCcEEEEecCCchhhhh--h---cCCCceeCCCCChhHHHHHHHHHhc
Q 000983 305 -HKGSRVLVTSRTARVSQI--M---GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 305 -~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
..+..||.||...+..+. . ..+..+++...+.++..++|..+..
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 134456666655433221 1 2245689999999999999998763
No 169
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=3.2e-05 Score=69.90 Aligned_cols=86 Identities=22% Similarity=0.245 Sum_probs=62.3
Q ss_pred hccCCcccEEecCCCCCcccCcccccC-ccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccce
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEEL-KLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l-~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 665 (1199)
+.....|...+|++|.++.+|+.|... +.+..|+|++|.|..+|.++..++.|+.|+++.|. +...|.-|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence 445566777777888777777766543 47777788888888888777777888888887776 5666777777777777
Q ss_pred eecccccc
Q 000983 666 LELEEMFW 673 (1199)
Q Consensus 666 L~l~~n~~ 673 (1199)
|+..+|..
T Consensus 128 Lds~~na~ 135 (177)
T KOG4579|consen 128 LDSPENAR 135 (177)
T ss_pred hcCCCCcc
Confidence 77777643
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.33 E-value=0.0015 Score=80.39 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=84.3
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc-----cceeEEEEecCCCChHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-----FESRMWVCVTVDYDLPRI 245 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~ 245 (1199)
+.++||+.++.++++.|.... +. -+.++|.+|+|||++|+.++... +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-----~~-n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-----KN-NPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-----CC-CeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH
Confidence 468999999999999887643 12 33589999999999999998731 1111 13333321 11111
Q ss_pred HHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc--------CccChHHHHHhhhCCCCCcEEEEecCCc
Q 000983 246 LKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE--------DYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1199)
+. +......-...+...+...-+.++.+|++|++..- ...+...+..++...+ .-+||-+|...
T Consensus 254 ----la---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~ 325 (758)
T PRK11034 254 ----LA---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQ 325 (758)
T ss_pred ----hc---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChH
Confidence 10 00000111111222222222355679999999531 1112222222222222 24455555433
Q ss_pred hhhh-------hhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 318 RVSQ-------IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 318 ~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
+... .......+.+++++.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3211 11223578999999999999988654
No 171
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=0.00016 Score=87.89 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=89.5
Q ss_pred ceeEEEEEeccC--CCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccc
Q 000983 539 ETRHVSLLCKHV--EKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLL 616 (1199)
Q Consensus 539 ~~r~lsl~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L 616 (1199)
+.+|+.+.+... ..+.......+|.|++|.+.... -..+-+...+.++++|+.||+|+++++.+ ..+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~----~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ----FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCce----ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 445555554321 12223334568999999987211 11222456678999999999999999988 779999999
Q ss_pred cEEeccCCCcccc--chhhcccCcccEEecCCCCcccccchhh-------ccccccceeecccccc
Q 000983 617 RYLDLSRTEIKVL--PNSICNLYNLQTLKLIGCIWIMELPKDL-------ANLVKLRNLELEEMFW 673 (1199)
Q Consensus 617 r~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~i-------~~L~~L~~L~l~~n~~ 673 (1199)
+.|.+++-.+..- -..+.+|++|++||+|..... ..+.-+ ..|++||.||.+++.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 9999998877643 246888999999999976532 222111 3488999999887644
No 172
>PRK08181 transposase; Validated
Probab=97.30 E-value=0.0012 Score=70.70 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=56.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeE
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRF 279 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~ 279 (1199)
-+.++|.+|+|||.||.++.+. .......++|+++ .+++..+..... ..+.......+ .+-=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcCC
Confidence 4789999999999999999873 3233334455543 344444433211 11222222222 2334
Q ss_pred EEEEecCCCcCccCh--HHHHHhhhCCCCCcEEEEecCCc
Q 000983 280 LLVLDDVWNEDYRKW--EPLQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 280 LlVlDdvw~~~~~~~--~~l~~~l~~~~~gs~iivTtR~~ 317 (1199)
|||+||+.......| +.+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999999965433333 24555554322223589998854
No 173
>PRK10536 hypothetical protein; Provisional
Probab=97.26 E-value=0.0023 Score=66.59 Aligned_cols=134 Identities=16% Similarity=0.267 Sum_probs=75.6
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEE----ecCC--C---Ch
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC----VTVD--Y---DL 242 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~~~~--~---~~ 242 (1199)
.+.++.......+.++... .++.++|.+|.|||+||.+++.+.-..+.|+..+-+. +... | +.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 4567888888888888643 2889999999999999999887432234455433221 1110 0 11
Q ss_pred H----HHHHHHHHhcccCCCCCCcHHHHH--------HHHHHHhCCCeE---EEEEecCCCcCccChHHHHHhhhCCCCC
Q 000983 243 P----RILKGMIEFHSKMEQSTSSISLLE--------TRLLEFLTGQRF---LLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1199)
Q Consensus 243 ~----~~~~~i~~~~~~~~~~~~~~~~l~--------~~l~~~l~~k~~---LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1199)
. -.++-+.+.+..... ....+.+. -.-..++++..+ +||+|++.+.+. ..+...+...+.+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCCC
Confidence 1 111112222211000 00011110 001235667655 999999976543 5566666667789
Q ss_pred cEEEEecCCc
Q 000983 308 SRVLVTSRTA 317 (1199)
Q Consensus 308 s~iivTtR~~ 317 (1199)
|+||+|--..
T Consensus 204 sk~v~~GD~~ 213 (262)
T PRK10536 204 VTVIVNGDIT 213 (262)
T ss_pred CEEEEeCChh
Confidence 9999986543
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.26 E-value=0.0028 Score=80.51 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=82.8
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccccc------ceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF------ESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~ 244 (1199)
+.+|||+.++.+++..|.... ..-+.++|.+|+|||++|+.++.. +...+ ...+|.. +...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 468999999999999996543 233458999999999999999873 32211 2223321 1111
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhC-CCeEEEEEecCCCcCc----cChHHHHHhh-hCCCCC-cEEEEecCCc
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLT-GQRFLLVLDDVWNEDY----RKWEPLQQLL-KQGHKG-SRVLVTSRTA 317 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdvw~~~~----~~~~~l~~~l-~~~~~g-s~iivTtR~~ 317 (1199)
+.. .......-...+...+.+.-+ +++.+|++|++..-.. ..-.+....+ +....| -++|-+|...
T Consensus 240 l~a-------~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 240 LIA-------GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLD 312 (852)
T ss_pred Hhh-------cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHH
Confidence 110 000001111222333322222 4689999999963210 0001111122 111223 3455554433
Q ss_pred hhhh-------hhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 318 RVSQ-------IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 318 ~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
.... .......+.+...+.++..+++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 3211 11233567899999999999887654
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.0024 Score=76.45 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=40.7
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-++++|-+..++++..|+..... .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999876431 1233468999999999999999999973
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0085 Score=72.17 Aligned_cols=132 Identities=18% Similarity=0.293 Sum_probs=81.8
Q ss_pred CccccchhhHHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccce-eEEEEecCCCChHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~ 246 (1199)
..++|-+..+..+.+.+..... +...+..+...+|+.|||||.||++++.. .|+. ...+. +|+.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR----~DMSEy~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIR----IDMSEYM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCcccee----echHHHH
Confidence 3578888888888877764321 23456778889999999999999999872 2421 11221 2333322
Q ss_pred --HHHHHhcccCCCC--CCcHHHHHHHHHHHhCCCeE-EEEEecCCCcCccChHHHHHhhhCCC-----------CCcEE
Q 000983 247 --KGMIEFHSKMEQS--TSSISLLETRLLEFLTGQRF-LLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRV 310 (1199)
Q Consensus 247 --~~i~~~~~~~~~~--~~~~~~l~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~i 310 (1199)
+.+.+-++.+..- ...-..+.+. .+.++| +|.||+|...+++..+-+.+.|.++. +.+-|
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEa----VRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEA----VRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHh----hhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 1222223322211 2222334444 466777 88899999888888888888887542 34556
Q ss_pred EEecC
Q 000983 311 LVTSR 315 (1199)
Q Consensus 311 ivTtR 315 (1199)
|+||-
T Consensus 638 ImTSN 642 (786)
T COG0542 638 IMTSN 642 (786)
T ss_pred EEecc
Confidence 77776
No 177
>PRK12377 putative replication protein; Provisional
Probab=97.23 E-value=0.00067 Score=71.58 Aligned_cols=101 Identities=25% Similarity=0.201 Sum_probs=57.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
..+.++|.+|+|||+||.++++. +......++++++. +++..+-..... ......+ .+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~----l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF----LQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH----HHHh-cCC
Confidence 46889999999999999999984 33333445666553 344444333211 1111222 2222 345
Q ss_pred EEEEEecCCCcCccChH--HHHHhhhCCC-CCcEEEEecCC
Q 000983 279 FLLVLDDVWNEDYRKWE--PLQQLLKQGH-KGSRVLVTSRT 316 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~~-~gs~iivTtR~ 316 (1199)
=||||||+..+....|. .+...+.... +.--+||||-.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 69999999544334453 4444443322 22347788774
No 178
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.19 E-value=0.01 Score=69.02 Aligned_cols=210 Identities=17% Similarity=0.139 Sum_probs=125.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc------cccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER------VREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
..+-+|+.+..+|...+..--.+ ......+.|.|.+|.|||..+..|.+... --..|+ .+.|..-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34568999999988877654322 23455899999999999999999988321 122343 34555556667899
Q ss_pred HHHHHHHhcccCCCC-CCcHHHHHHHHHH-HhCCCeEEEEEecCCCcCccChHHHHHhhhC-CCCCcEEEEecCC--c--
Q 000983 245 ILKGMIEFHSKMEQS-TSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSRT--A-- 317 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~-~~~~~~l~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~--~-- 317 (1199)
+...|.+.+...... ...++.+..++.. .=+.+..++++|+++..-...-+.+...|.+ ..++||++|.+=. .
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 999999998766433 3333333333320 0124568888998843211223556666655 4578887765421 1
Q ss_pred -------hhhhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 318 -------RVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 318 -------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
.|+..++ ...+...+-+.++-.+....+..+...+ .....+-+|++|+..-|-.-.|+.+.-++.
T Consensus 554 PEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f----~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 554 PERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAF----ENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred HHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhc----chhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1222222 1245566777777777776666544332 233445556666666666666665554443
No 179
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=6.7e-05 Score=76.89 Aligned_cols=102 Identities=24% Similarity=0.170 Sum_probs=67.4
Q ss_pred cccEEecCCCCCcccC--cccc-cCccccEEeccCCCccc---cchhhcccCcccEEecCCCCcc---cccchhhccccc
Q 000983 592 YLRLLDLSSSTLTVLP--DSVE-ELKLLRYLDLSRTEIKV---LPNSICNLYNLQTLKLIGCIWI---MELPKDLANLVK 662 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~~lp--~~i~-~l~~Lr~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~~~~l---~~lp~~i~~L~~ 662 (1199)
.+..|.+.++.|...- ..|+ ...+++.|||.+|.|.. +-.-+.+|+.|++|+++.|.+. +.+| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 4446667777765332 2233 46789999999999874 4445778999999999988742 3333 34568
Q ss_pred cceeecccccccccccCCCCcCCccccCccCeEEe
Q 000983 663 LRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 663 L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
|+.|.|.+.++.. ......+..++.++.|.++.+
T Consensus 123 l~~lVLNgT~L~w-~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGTGLSW-TQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCCCCCh-hhhhhhhhcchhhhhhhhccc
Confidence 8899888765432 233344566667777766654
No 180
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.17 E-value=0.0022 Score=67.60 Aligned_cols=103 Identities=24% Similarity=0.307 Sum_probs=57.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
...+.++|.+|+|||+||.++++. ....-..++++++ .++...+-..... ...+.. .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 346789999999999999999984 3222234455543 4444444333211 111222 2333344 3
Q ss_pred eEEEEEecCCCcCccChHH--HHHhhhCC-CCCcEEEEecCC
Q 000983 278 RFLLVLDDVWNEDYRKWEP--LQQLLKQG-HKGSRVLVTSRT 316 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 316 (1199)
.=+||+||+......+|+. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997665566653 44444322 123347777774
No 181
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.16 E-value=0.0063 Score=65.81 Aligned_cols=122 Identities=22% Similarity=0.224 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH------
Q 000983 177 DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI------ 250 (1199)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~------ 250 (1199)
..-++++..++..+. -|.+.|.+|+|||++|+++++ .... ..+.+++.......+++....
T Consensus 8 ~~l~~~~l~~l~~g~--------~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--------PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHhcCC--------eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhh
Confidence 344566666665432 456899999999999999986 2322 234555555555444432210
Q ss_pred ------HhcccCCC---CCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC----------------C
Q 000983 251 ------EFHSKMEQ---STSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG----------------H 305 (1199)
Q Consensus 251 ------~~~~~~~~---~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~----------------~ 305 (1199)
........ ....... +.... .+...+++|++...+.+.+..+...+..+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~----l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~ 149 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNR----LTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVH 149 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCch----HHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecC
Confidence 00000000 0000011 11111 23468999999876666666666666321 1
Q ss_pred CCcEEEEecCC
Q 000983 306 KGSRVLVTSRT 316 (1199)
Q Consensus 306 ~gs~iivTtR~ 316 (1199)
++.+||+|+..
T Consensus 150 ~~frvIaTsN~ 160 (262)
T TIGR02640 150 PEFRVIFTSNP 160 (262)
T ss_pred CCCEEEEeeCC
Confidence 35678888774
No 182
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.023 Score=58.30 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=108.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEec-CCCChHHHHHHHHHhcccCCCC--CCcHHHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT-VDYDLPRILKGMIEFHSKMEQS--TSSISLLETRLLE 272 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~l~~ 272 (1199)
.+..++.++|.-|.|||.++|+.... ..+ +.++-|.+. +..+...+...++..+...... ........+.+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 34669999999999999999955431 111 122223333 3456677777787777662211 1222333344444
Q ss_pred Hh-CCCe-EEEEEecCCCcCccChHHHHHhhhCCCCCc---EEEEecCC---c----hhhhhhcC-CCc-eeCCCCChhH
Q 000983 273 FL-TGQR-FLLVLDDVWNEDYRKWEPLQQLLKQGHKGS---RVLVTSRT---A----RVSQIMGI-RSP-YLLEYLPEDQ 338 (1199)
Q Consensus 273 ~l-~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~iivTtR~---~----~v~~~~~~-~~~-~~l~~L~~~~ 338 (1199)
.. +++| ..+++||......+..+.++-....-..++ +|+..-.- + .+....+. ... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 5777 899999998776666666665543222222 23332211 1 11111111 123 8999999999
Q ss_pred HHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHh
Q 000983 339 CWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGF 386 (1199)
Q Consensus 339 ~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 386 (1199)
...++..+..+...+. +---.+....|..+..|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~~~----~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGLPE----PLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCCCc----ccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 8888887776654321 1112355667889999999999887753
No 183
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=0.00011 Score=66.64 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=71.3
Q ss_pred ccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccch
Q 000983 576 LKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPK 655 (1199)
Q Consensus 576 ~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 655 (1199)
.|.+.++++.+-..++.+..|+|++|.|+.+|..+..++.||.|+++.|.+...|+-|..|.+|-.||..+|. ...+|.
T Consensus 62 ~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 62 DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred cchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcH
Confidence 5566666777777888999999999999999999999999999999999999999999999999999998876 566776
Q ss_pred hh
Q 000983 656 DL 657 (1199)
Q Consensus 656 ~i 657 (1199)
.+
T Consensus 141 dl 142 (177)
T KOG4579|consen 141 DL 142 (177)
T ss_pred HH
Confidence 64
No 184
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.13 E-value=0.0038 Score=78.84 Aligned_cols=45 Identities=31% Similarity=0.502 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+.++||+.++.++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999997643 234458999999999999999873
No 185
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.12 E-value=0.012 Score=70.30 Aligned_cols=180 Identities=16% Similarity=0.161 Sum_probs=94.1
Q ss_pred CCccccchhhHHHHHHHHh---CCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 170 TANVFGRDDDKERILHMLL---SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
-++++|.+..++++.+++. .... ......+-+.++|++|+|||++|+++++.. ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3578898877766654433 2100 011223457799999999999999999742 212 232221 1
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC----------ccChHHHH-Hhh---hC--CCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKWEPLQ-QLL---KQ--GHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~l~-~~l---~~--~~~g 307 (1199)
++..... ......+...+.......+.+|++||++.-. ...+.... ..+ .. ...+
T Consensus 123 ~~~~~~~---------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFVEMFV---------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHHHHh---------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 1111100 1122334444444445667899999995311 01122222 122 11 2234
Q ss_pred cEEEEecCCchhhh-----hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 308 SRVLVTSRTARVSQ-----IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 308 s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
-.||.||......+ ....+..+.+...+.++-.++|..++...... . ......+++.+.|.-
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~----~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA----P----DVDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC----c----chhHHHHHHhCCCCC
Confidence 45666776543211 11234578888888888888988776433211 1 112346777777643
No 186
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.11 E-value=0.0024 Score=70.08 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=70.0
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcc
Q 000983 175 GRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1199)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1199)
++........+++.... .....+-+.++|..|+|||.||.++++... ... ..+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEHH------HHHHHHHHHHh
Confidence 44444555566665332 112345688999999999999999999432 222 334566553 44455544332
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChH--HHHHhh-hCC-CCCcEEEEecCC
Q 000983 255 KMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWE--PLQQLL-KQG-HKGSRVLVTSRT 316 (1199)
Q Consensus 255 ~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~--~l~~~l-~~~-~~gs~iivTtR~ 316 (1199)
. .+.. +.+.. + .+-=||||||+-.+....|. .+...+ ... ..+-.+|+||-.
T Consensus 205 ~-----~~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 1122 22222 2 24458999999776667784 344433 322 345568888874
No 187
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.0019 Score=67.05 Aligned_cols=36 Identities=36% Similarity=0.559 Sum_probs=29.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV 236 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 236 (1199)
-.++|+|..|.|||||+..+.. .....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3567999999999999999987 47778877766644
No 188
>CHL00176 ftsH cell division protein; Validated
Probab=97.10 E-value=0.0071 Score=73.13 Aligned_cols=177 Identities=17% Similarity=0.199 Sum_probs=96.3
Q ss_pred CccccchhhHHHHH---HHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERIL---HMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~---~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.++.++++. ..+..... ......+-+.++|++|+|||+||++++... .. -|+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccH----HH
Confidence 45778876665554 44433221 011224468899999999999999998732 21 2333321 11
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC----------ccChHH-HHHhhh---C--CCCCc
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKWEP-LQQLLK---Q--GHKGS 308 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~-l~~~l~---~--~~~gs 308 (1199)
+.... . ......+...+.+.....+.+|++||++.-. ...++. +...+. . ...+-
T Consensus 252 f~~~~---~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---V------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---h------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11100 0 1112234444555556788999999995321 111222 222221 1 23455
Q ss_pred EEEEecCCchhhhh-h----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCC
Q 000983 309 RVLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG 375 (1199)
Q Consensus 309 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g 375 (1199)
.||.||...+..+. + ..+..+.+...+.++-.++++.++..... . .......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~------~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL------S--PDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc------c--hhHHHHHHHhcCCC
Confidence 67777766443221 1 22356788888999999999887754221 1 12234567777777
No 189
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.08 E-value=0.009 Score=59.48 Aligned_cols=44 Identities=30% Similarity=0.371 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.++||-++-++++.-.-.+++ .+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~gn------mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN------MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCceEeeCCCCCchhhHHHHHHH
Confidence 578999999998877666544 66778999999999999888887
No 190
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.04 E-value=0.0088 Score=68.58 Aligned_cols=119 Identities=22% Similarity=0.238 Sum_probs=74.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeE
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRF 279 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~ 279 (1199)
++.|.|+-++||||+++.+... ..+. .+++..........-+.+. ...+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999766652 2222 4444433222111111111 1111111122778
Q ss_pred EEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchh-----hhh-hcCCCceeCCCCChhHHHHHH
Q 000983 280 LLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV-----SQI-MGIRSPYLLEYLPEDQCWSIF 343 (1199)
Q Consensus 280 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-----~~~-~~~~~~~~l~~L~~~~~~~lf 343 (1199)
.|+||.|.. ..+|......+.+.++. +|++|+-+... +.. .|....+++-||+..|...+-
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999954 47899988888877666 89998876543 222 234567899999998887654
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.04 E-value=0.00047 Score=69.22 Aligned_cols=100 Identities=28% Similarity=0.421 Sum_probs=51.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
.-+.++|.+|+|||.||.++.+.. +...+ .+.|+.+ .+++..+-. ... ........+.+ .+ -
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~l~~----~~~-~~~~~~~~~~l----~~-~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDELKQ----SRS-DGSYEELLKRL----KR-V 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHHHC----CHC-CTTHCHHHHHH----HT-S
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceeccccc----ccc-ccchhhhcCcc----cc-c
Confidence 468899999999999999999842 22222 3456654 334444432 111 12222222222 22 3
Q ss_pred EEEEEecCCCcCccChH--HHHHhhhCCCCCcEEEEecCC
Q 000983 279 FLLVLDDVWNEDYRKWE--PLQQLLKQGHKGSRVLVTSRT 316 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~~~gs~iivTtR~ 316 (1199)
=||||||+-.+...+|. .+...+........+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 47889999655443442 223333221112258888884
No 192
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0068 Score=70.30 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=68.2
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
+.+-.|+++-+++|++++.-.......+-+++..+|++|||||++|+.|++ .....|-. ++|..-.+..+|-.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fSvGG~tDvAeIkG-- 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FSVGGMTDVAEIKG-- 482 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---EeccccccHHhhcc--
Confidence 456789999999999998655444456778999999999999999999998 44444432 34554444433310
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCC
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWN 288 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~ 288 (1199)
. .......-...+.+.|+.. +-.+=|+.+|.|+.
T Consensus 483 --H--RRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 483 --H--RRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred --c--ceeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 0 0011122233344444332 44566899999964
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.013 Score=65.63 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=90.1
Q ss_pred cccc-chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 172 NVFG-RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 172 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.++| -+.-++.+...+..+. -.....++|+.|+||||+|+.+++..--....... .+....+-..+.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCHHHHHHhcCCC
Confidence 4566 5666677777775443 45677899999999999999887631111100000 0000000000000000
Q ss_pred Hhcc--cCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-
Q 000983 251 EFHS--KMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI- 322 (1199)
Q Consensus 251 ~~~~--~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~- 322 (1199)
-.+. ........++++.+.+... ..+.+-++|+|++...+......+...+.....++.+|++|.+. .+...
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 0000 0000012223333222111 23455679999997766666777888887766777777777653 33332
Q ss_pred hcCCCceeCCCCChhHHHHHHHH
Q 000983 323 MGIRSPYLLEYLPEDQCWSIFKK 345 (1199)
Q Consensus 323 ~~~~~~~~l~~L~~~~~~~lf~~ 345 (1199)
......+++.+++.++..+.+..
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH
Confidence 23346789999999998777765
No 194
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.028 Score=61.77 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=101.1
Q ss_pred hhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccce-----eEEEEecCCCChHHHHHHHHHh
Q 000983 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-----RMWVCVTVDYDLPRILKGMIEF 252 (1199)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----~~wv~~~~~~~~~~~~~~i~~~ 252 (1199)
...+.+...+..+. -...+.++|+.|+||+++|..+++..--.....+ +-|+.....+|...+... -+.
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNR 84 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCc
Confidence 34456666665432 3557889999999999999888763211110000 001111111110000000 000
Q ss_pred cccCCCCCCcHHHHHHHHHHHh-----CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhhhh-hcC
Q 000983 253 HSKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQI-MGI 325 (1199)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~ 325 (1199)
-+......-.++++.+ +.+.+ .+++-++|+|+++..+...-..+...+.....++.+|++|.. ..+... ...
T Consensus 85 ~~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 85 TGDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 0000000112333322 22222 356679999999776666667777777766677777777664 334332 233
Q ss_pred CCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 326 RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 326 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
...+.+.+++.+++.+.+.... . . +..+..++..++|.|+.+..+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~~----~-----~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQG----V-----S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHcC----C-----C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 4578899999999888776531 1 1 2236678999999998765443
No 195
>PRK06526 transposase; Provisional
Probab=97.00 E-value=0.0015 Score=69.52 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=53.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
.-+.|+|++|+|||+||.++.+... ...+ .+.|+ +..++...+..... .. .+...+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~-----~~---~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH-----AG---RLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh-----cC---cHHHHHHHh--ccC
Confidence 3578999999999999999987422 2222 23333 23344444432211 11 122223322 234
Q ss_pred EEEEEecCCCcCccCh--HHHHHhhhCC-CCCcEEEEecCCc
Q 000983 279 FLLVLDDVWNEDYRKW--EPLQQLLKQG-HKGSRVLVTSRTA 317 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTtR~~ 317 (1199)
-+||+||+.....+.+ +.+...+... ..++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 5899999965432233 2344444322 2344 88888854
No 196
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00023 Score=86.46 Aligned_cols=132 Identities=25% Similarity=0.144 Sum_probs=86.0
Q ss_pred CCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCc--ccCcccccCccccEEeccCCCccccchhhcccCc
Q 000983 561 SKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYN 638 (1199)
Q Consensus 561 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 638 (1199)
-.+|+.|.+.+. ..-..+.+...-..++.|+.|.+++-.+. .+-.-..++++|+.||+|++.++.+ ..+++|+|
T Consensus 121 r~nL~~LdI~G~---~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGS---ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCcccc---chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 456777777621 11122334444556888999988886554 3444466788999999999999988 77999999
Q ss_pred ccEEecCCCCccc-ccchhhccccccceeecccccccccccCC----CCcCCccccCccCeEE
Q 000983 639 LQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLP----AGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 639 L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp----~~i~~l~~L~~L~l~~ 696 (1199)
||+|.+++=.+.. .--..+.+|++|++||+|.........+. +.-..|++|+.|+.++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 9999888644221 12236788999999999875432211111 1112367777777764
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.97 E-value=0.011 Score=58.43 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=76.7
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc------------------ccceeEEEEe
Q 000983 175 GRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE------------------HFESRMWVCV 236 (1199)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~~ 236 (1199)
|-+...+.+.+.+..+. -...+.++|..|+||+|+|..+++..--.. ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 44566677777776543 345678999999999999998887321111 1122233322
Q ss_pred cCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh-----CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEE
Q 000983 237 TVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL 311 (1199)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (1199)
.... ..-..+++. .+.+.+ .+++=++|+||++..+...+..+...+.....++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2110 011223332 222222 2456689999998877788889999998888899999
Q ss_pred EecCCch-hhhh-hcCCCceeCCCC
Q 000983 312 VTSRTAR-VSQI-MGIRSPYLLEYL 334 (1199)
Q Consensus 312 vTtR~~~-v~~~-~~~~~~~~l~~L 334 (1199)
++|++.. +... ......+.+.++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 8888754 3222 222334555544
No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.96 E-value=0.0034 Score=71.58 Aligned_cols=150 Identities=17% Similarity=0.300 Sum_probs=83.0
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHH-
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGM- 249 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i- 249 (1199)
.++||++.++.+...+..+. -|.|.|.+|+|||++|+.+.........|.. ..-.+ ...+++..+
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~-----~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY-----LMTRFSTPEEVFGPLS 87 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee-----eeeeecCcHHhcCcHH
Confidence 47899999999999987765 5679999999999999999973222223331 11111 112222111
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCC---CeEEEEEecCCCcCccChHHHHHhhhCCC---------CCcEEEEecCCc
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTG---QRFLLVLDDVWNEDYRKWEPLQQLLKQGH---------KGSRVLVTSRTA 317 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~---k~~LlVlDdvw~~~~~~~~~l~~~l~~~~---------~gs~iivTtR~~ 317 (1199)
+..... . ..+....++ .--++++|+++.........+...+.... -..+++|++.++
T Consensus 88 i~~~~~----~-------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKD----E-------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhh----c-------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 111000 0 001111111 11289999999887777777777773221 123565555542
Q ss_pred hhhh-------hhc-CCCceeCCCCChh-HHHHHHHHH
Q 000983 318 RVSQ-------IMG-IRSPYLLEYLPED-QCWSIFKKI 346 (1199)
Q Consensus 318 ~v~~-------~~~-~~~~~~l~~L~~~-~~~~lf~~~ 346 (1199)
... .+. -...+.+.+++.+ +-.+++...
T Consensus 157 -LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 -LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 111 1235678899754 447777653
No 199
>PRK08118 topology modulation protein; Reviewed
Probab=96.96 E-value=0.0004 Score=69.08 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=27.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccc-cccceeEE
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVR-EHFESRMW 233 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 233 (1199)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999854443 45676665
No 200
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.96 E-value=0.00028 Score=71.55 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=64.4
Q ss_pred ccCCcccEEecCCCCCc-----ccCcccccCccccEEeccCCCcc----ccc-------hhhcccCcccEEecCCCCccc
Q 000983 588 HQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIK----VLP-------NSICNLYNLQTLKLIGCIWIM 651 (1199)
Q Consensus 588 ~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l~ 651 (1199)
..+..+..+|||+|.|. .+...|.+-++|+.-+++.-... .+| +.+-+|++||+.+||.|-+-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34888999999999886 34556777888999988874221 333 456789999999999998766
Q ss_pred ccchh----hccccccceeecccccc
Q 000983 652 ELPKD----LANLVKLRNLELEEMFW 673 (1199)
Q Consensus 652 ~lp~~----i~~L~~L~~L~l~~n~~ 673 (1199)
..|+. |++-+.|.||.|++|.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC
Confidence 66654 45678899999998854
No 201
>PRK09183 transposase/IS protein; Provisional
Probab=96.95 E-value=0.0028 Score=68.03 Aligned_cols=100 Identities=23% Similarity=0.233 Sum_probs=52.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
..+.|+|.+|+|||+||.+++..... .. ..+.++. ..++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G-~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AG-IKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cC-CeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 36779999999999999999863221 11 2233433 22333333221110 11 222232222 344
Q ss_pred EEEEEecCCCcCccChH--HHHHhhhCC-CCCcEEEEecCC
Q 000983 279 FLLVLDDVWNEDYRKWE--PLQQLLKQG-HKGSRVLVTSRT 316 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 316 (1199)
-++|+||+.......+. .+...+... ..++ +||||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 59999999754333332 344444322 2344 8888875
No 202
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.03 Score=61.54 Aligned_cols=176 Identities=11% Similarity=0.027 Sum_probs=100.4
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccc--e-----eEEEEecCCCChHHHHHHHHH
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE--S-----RMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~-----~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
..+.+.+.+..+ .-...+-++|+.|+||+++|+.++...--...-+ | +-++.....+|...
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~------- 78 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV------- 78 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE-------
Confidence 345555555443 3456888999999999999998876311000000 0 00010111111100
Q ss_pred hcccCC-CCCCcHHHHHHHHHHHh-----CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-h
Q 000983 252 FHSKME-QSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-M 323 (1199)
Q Consensus 252 ~~~~~~-~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~ 323 (1199)
+.... ...-.++++.+ +.+.+ .+++=++|+|++...+......+...+.....++.+|++|.+. .+... .
T Consensus 79 -i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 79 -IKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred -EecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 01122333322 22222 3455688999998777777888888887777777776666653 44333 2
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 383 (1199)
.....+.+.+++.++..+.+.... . . .+..++..++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~----~-----~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG----I-----T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC----C-----c------hHHHHHHHcCCCHHHHHHH
Confidence 334578999999999988776531 1 1 1346788999999877655
No 203
>PRK06921 hypothetical protein; Provisional
Probab=96.90 E-value=0.0024 Score=68.78 Aligned_cols=99 Identities=21% Similarity=0.329 Sum_probs=55.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccc-cceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREH-FESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~ 276 (1199)
..-+.++|..|+|||+||.++++. +... -..+++++.. +++..+.... +.....+. .+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RMK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hhc-
Confidence 456789999999999999999983 3332 3445666642 2233322211 11122222 222
Q ss_pred CeEEEEEecCC-----CcCccChH--HHHHhhhCC-CCCcEEEEecCC
Q 000983 277 QRFLLVLDDVW-----NEDYRKWE--PLQQLLKQG-HKGSRVLVTSRT 316 (1199)
Q Consensus 277 k~~LlVlDdvw-----~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 316 (1199)
+-=||||||+. .+...+|. .+...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34599999993 22223453 344444322 234458888874
No 204
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0071 Score=70.65 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=95.5
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
+.+..|.++-+++|++.|.-......-+-.++++||++|||||+|++.+++ .....|-. +++..-.|..+|-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhc---
Confidence 456789999999999988543222234557999999999999999999998 45555533 2333333332221
Q ss_pred HHhccc-CCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCcc----ChHHHHHhhh-CCC------------CCcEEE
Q 000983 250 IEFHSK-MEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR----KWEPLQQLLK-QGH------------KGSRVL 311 (1199)
Q Consensus 250 ~~~~~~-~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l~-~~~------------~gs~ii 311 (1199)
+- ......-...+.+.+++. +.++=+++||.++....+ --..+...|. ..+ -=|.|+
T Consensus 394 ----GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 394 ----GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ----cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 00 011122223344444432 556779999999653221 1122222221 111 124443
Q ss_pred -EecC-Cch-h-hhhhcCCCceeCCCCChhHHHHHHHHHhc
Q 000983 312 -VTSR-TAR-V-SQIMGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 312 -vTtR-~~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
|||- +-+ + +..+...+++++.+-.++|-.+.-+++..
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3443 322 2 23345567899999999998887776653
No 205
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.84 E-value=0.0032 Score=79.20 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=78.6
Q ss_pred CCccccchhhHHHHHHHHhCCC---CCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1199)
...++|.+..++.+.+.+.... ........++.++|+.|+|||.||++++.. +-+... .++.+. +.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~--~~~~~d----mse~~ 636 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQ--NLITIN----MSEFQ 636 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCc--ceEEEe----HHHhh
Confidence 3568999999999988875421 112345668899999999999999999863 211111 222221 11111
Q ss_pred --HHHHHhcccCCCC--CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEE
Q 000983 247 --KGMIEFHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVL 311 (1199)
Q Consensus 247 --~~i~~~~~~~~~~--~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ii 311 (1199)
..+..-++..... ......+...+++ ...-+|+||++...+.+.++.+...+..+. ..+-||
T Consensus 637 ~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 637 EAHTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred hhhhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 1111112211110 1111234444432 445699999998877777888888776543 445667
Q ss_pred EecCC
Q 000983 312 VTSRT 316 (1199)
Q Consensus 312 vTtR~ 316 (1199)
+||..
T Consensus 714 ~TSNl 718 (852)
T TIGR03345 714 LTSNA 718 (852)
T ss_pred EeCCC
Confidence 77664
No 206
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.058 Score=59.49 Aligned_cols=176 Identities=10% Similarity=0.058 Sum_probs=101.1
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccccc---ce-----eEEEEecCCCChHHHHHHHHH
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF---ES-----RMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
.+.+...+..+. -...+.+.|+.|+||+++|++++...--.... .| +-++.....+|...+
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 345566665432 35677899999999999999988632111100 00 001111111111100
Q ss_pred hcccCCCCCCcHHHHHH---HHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhh-hcC
Q 000983 252 FHSKMEQSTSSISLLET---RLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-MGI 325 (1199)
Q Consensus 252 ~~~~~~~~~~~~~~l~~---~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~ 325 (1199)
.......-.++++.+ .+... ..+++=++|+|+++..+......+...+.....++.+|++|.+. .+... ...
T Consensus 80 --~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 80 --EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred --ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 000011123333332 22211 23666788899998777777788888887777777777777654 44333 233
Q ss_pred CCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 326 RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 326 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
...+.+.++++++..+.+...... . ...+...+..++|.|+.+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~--------~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSA--------E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhcc--------C----hHHHHHHHHHcCCCHHHH
Confidence 467899999999998888765411 0 122556788899999644
No 207
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.76 E-value=0.016 Score=73.26 Aligned_cols=137 Identities=17% Similarity=0.200 Sum_probs=75.8
Q ss_pred CccccchhhHHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..++|.+..++.+...+..... .......++.++|+.|+|||++|+.+++. ....-...+.+..+. +.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se-~~~~~~-- 642 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSE-FMEKHS-- 642 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHH-hhhhhh--
Confidence 4688999998888877754210 11233457889999999999999999973 211111223333332 111111
Q ss_pred HHHHhcccCCCC-C-CcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEec
Q 000983 248 GMIEFHSKMEQS-T-SSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTS 314 (1199)
Q Consensus 248 ~i~~~~~~~~~~-~-~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (1199)
+.+-++..... . .....+...++ +...-+|+|||+...+...+..+...+..+. ..+-||+||
T Consensus 643 -~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 643 -VSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred -HHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11112211110 1 11122333332 1233599999998777777888888775431 223378888
Q ss_pred CC
Q 000983 315 RT 316 (1199)
Q Consensus 315 R~ 316 (1199)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 75
No 208
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.055 Score=58.13 Aligned_cols=188 Identities=18% Similarity=0.191 Sum_probs=103.9
Q ss_pred ccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 172 NVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
++=|-++.+++|.+...-+-- -+-+.++=|.++|++|.|||-||++|++ +....| +.|.. .+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg----SE 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG----SE 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc----HH
Confidence 455778888888776643210 0123456678999999999999999999 444444 32221 12
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhC-CCeEEEEEecCCC-----------cCccChHHHHHhhh---CC--CCC
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLT-GQRFLLVLDDVWN-----------EDYRKWEPLQQLLK---QG--HKG 307 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdvw~-----------~~~~~~~~l~~~l~---~~--~~g 307 (1199)
+.++-+ + .. ..+.+.+.+.-+ .....|++|.++. .+.+.-..+...|. .+ ...
T Consensus 221 lVqKYi---G------EG-aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQKYI---G------EG-ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHHh---c------cc-hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 222111 1 11 223333444333 5589999999852 11112233333332 22 245
Q ss_pred cEEEEecCCchhhhh-----hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh----H
Q 000983 308 SRVLVTSRTARVSQI-----MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP----L 378 (1199)
Q Consensus 308 s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----L 378 (1199)
-|||..|-..++.+. -.-+..+++..-+.+.-.+.|+-|+-...-. ..-+++ .+++.|.|.- -
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~----~dvd~e----~la~~~~g~sGAdlk 362 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA----DDVDLE----LLARLTEGFSGADLK 362 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc----cCcCHH----HHHHhcCCCchHHHH
Confidence 689998876655432 1234567777556666667887776543321 122333 4556666554 4
Q ss_pred HHHHHHHhhc
Q 000983 379 AVKAIAGFLR 388 (1199)
Q Consensus 379 ai~~~~~~l~ 388 (1199)
|+.+=|++++
T Consensus 363 aictEAGm~A 372 (406)
T COG1222 363 AICTEAGMFA 372 (406)
T ss_pred HHHHHHhHHH
Confidence 5666666653
No 209
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.73 E-value=0.0045 Score=78.41 Aligned_cols=136 Identities=13% Similarity=0.176 Sum_probs=76.9
Q ss_pred CccccchhhHHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..++|-+..++.+...+..... ....+..++.++|+.|+|||+||+.+++. +-..-...+-+..+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 5688999999998887753211 12234556779999999999999999872 2111112222333321111111
Q ss_pred HHHHhcccCC-CC-CCcHHHHHHHHHHHhCCCe-EEEEEecCCCcCccChHHHHHhhhCC-----------CCCcEEEEe
Q 000983 248 GMIEFHSKME-QS-TSSISLLETRLLEFLTGQR-FLLVLDDVWNEDYRKWEPLQQLLKQG-----------HKGSRVLVT 313 (1199)
Q Consensus 248 ~i~~~~~~~~-~~-~~~~~~l~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivT 313 (1199)
...++... .. ......+...+ +.++ -+++||++...+.+.+..+...+..+ ...+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~l~~~~----~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQLTEAV----RKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccchHHHHH----HhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11112111 00 11122333333 4444 58999999888878888888887653 134556777
Q ss_pred cCC
Q 000983 314 SRT 316 (1199)
Q Consensus 314 tR~ 316 (1199)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 210
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.71 E-value=0.0072 Score=76.79 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=78.4
Q ss_pred CccccchhhHHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..++|.+..++.+...+..... .......++.++|+.|+|||++|+.++.. ....-...+.+..+.-..... ..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~-~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS-VA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch-HH
Confidence 4689999999999888865321 11233567889999999999999999973 211111223333332111111 11
Q ss_pred HHHHhcccCCC--CCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEec
Q 000983 248 GMIEFHSKMEQ--STSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTS 314 (1199)
Q Consensus 248 ~i~~~~~~~~~--~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (1199)
.+ ++.... .......+...++. ....+|+||++...+.+.+..+...+..+. ..+-||+||
T Consensus 642 ~l---~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 642 RL---IGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred Hh---cCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 11 111110 01112233333332 233589999998888888888888885441 334477777
Q ss_pred CC
Q 000983 315 RT 316 (1199)
Q Consensus 315 R~ 316 (1199)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 74
No 211
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.68 E-value=0.0033 Score=61.45 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=52.2
Q ss_pred cccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCC-CCCCccceEEEccCCCCCCCcccccCCCCCCcceEE
Q 000983 970 QRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRW-PNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLS 1048 (1199)
Q Consensus 970 ~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~-~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~ 1048 (1199)
.+...++|++|... ....|+.++.|..|.+++|.+...-|.+ ..+++|+.|.+.+|. +..+.....+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 45556666666422 2234666677778888877776666665 556777788877766 55555445556666666666
Q ss_pred ecCCC
Q 000983 1049 IRGCP 1053 (1199)
Q Consensus 1049 l~~c~ 1053 (1199)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 66655
No 212
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.68 E-value=0.0016 Score=63.61 Aligned_cols=107 Identities=27% Similarity=0.214 Sum_probs=71.5
Q ss_pred CCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhc-ccCcccEEecCCCCcccccc--hhhcccccccee
Q 000983 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSIC-NLYNLQTLKLIGCIWIMELP--KDLANLVKLRNL 666 (1199)
Q Consensus 590 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L 666 (1199)
....-.+||++|.+..++. |..+..|.+|.|.+|.|+.+-+.+. -+++|++|.|.+|++ ..+- ..+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcccee
Confidence 4456678888888877654 7778888888898888888755444 456788888888773 3221 235677888888
Q ss_pred ecccccccccccCC-CCcCCccccCccCeEEec
Q 000983 667 ELEEMFWFKCSTLP-AGIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 698 (1199)
.+-+|....-...- --+.++++|++|+...+.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88877554321111 124567777777776553
No 213
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.67 E-value=0.0081 Score=75.15 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=70.5
Q ss_pred CccccchhhHHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.++.. . +...+.+..+.-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 4577888888888877764211 11234557889999999999999999973 2 2223444443321111
Q ss_pred HHHHhcccCCCC--CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC
Q 000983 248 GMIEFHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG 304 (1199)
Q Consensus 248 ~i~~~~~~~~~~--~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (1199)
.+...++..... ......+.+.++. ...-+++||+++..+.+.+..+...+..+
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 111112211110 1122233333322 33459999999888877788888877543
No 214
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.66 E-value=0.0059 Score=61.94 Aligned_cols=130 Identities=20% Similarity=0.299 Sum_probs=64.1
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC--CC----hHHH----
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YD----LPRI---- 245 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~----~~~~---- 245 (1199)
+..+-...++.|.. ..++.+.|++|.|||.||.+.+-+.-..+.|+..+++.-.-. .+ ..++
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 44555566666663 348999999999999999988876555578888777642211 00 0000
Q ss_pred ---HHHHHHhcccCCCCCCcHHHHHHH------HHHHhCCC---eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEe
Q 000983 246 ---LKGMIEFHSKMEQSTSSISLLETR------LLEFLTGQ---RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVT 313 (1199)
Q Consensus 246 ---~~~i~~~~~~~~~~~~~~~~l~~~------l~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 313 (1199)
..-+.+.+..-. .....+.+.+. -..+++|+ ...||+|++.+.+. .++...+...+.|||||++
T Consensus 77 ~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKIIIT 152 (205)
T ss_dssp -TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEEEEe
Confidence 111111111110 11122222110 01234554 46999999965443 5566667777899999998
Q ss_pred cCCc
Q 000983 314 SRTA 317 (1199)
Q Consensus 314 tR~~ 317 (1199)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 6543
No 215
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.66 E-value=0.00072 Score=65.46 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=48.4
Q ss_pred EEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEE
Q 000983 201 IPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFL 280 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~L 280 (1199)
|.++|.+|+|||+||+.+++. ... ...-+.++...+..++....--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 568999999999999999972 321 22345677777766554322111 000 000001111111 17899
Q ss_pred EEEecCCCcCccChHHHHHhhh
Q 000983 281 LVLDDVWNEDYRKWEPLQQLLK 302 (1199)
Q Consensus 281 lVlDdvw~~~~~~~~~l~~~l~ 302 (1199)
+|||++...+...+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997655445555555553
No 216
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.66 E-value=0.0083 Score=60.75 Aligned_cols=36 Identities=33% Similarity=0.719 Sum_probs=28.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEE
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWV 234 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 234 (1199)
+..+|.++|+.|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999997 455455555555
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.65 E-value=0.0017 Score=71.31 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=42.3
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.++|.++.++++++++.....+.....+++.++|++|+||||||+++++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997654322345689999999999999999999984
No 218
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.65 E-value=0.0025 Score=70.43 Aligned_cols=102 Identities=17% Similarity=0.286 Sum_probs=55.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
.-+.++|..|+|||+||.++++. +...-..++++++. +++..+....... ..+.... + +.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~---~-~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFNN---DKELEEV---Y-DLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHHH---H-HHhcc-C
Confidence 46889999999999999999984 22222345566543 2333332211100 1111111 1 22222 2
Q ss_pred EEEEEecCCCcCccCh--HHHHHhhhCC-CCCcEEEEecCC
Q 000983 279 FLLVLDDVWNEDYRKW--EPLQQLLKQG-HKGSRVLVTSRT 316 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTtR~ 316 (1199)
=||||||+..+....| +.+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999965544444 3444444332 234568888874
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.023 Score=63.57 Aligned_cols=149 Identities=21% Similarity=0.298 Sum_probs=89.7
Q ss_pred CCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 195 EDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
......+.+.|++|+|||+||.+++. ...|+.+--++..... + ..+......+...+...-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~mi-------------G--~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMI-------------G--LSESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHcc-------------C--ccHHHHHHHHHHHHHHhh
Confidence 45567788999999999999999985 3567654333221111 1 111222334555566666
Q ss_pred CCCeEEEEEecCCCcCccChHHH------------HHhhhC-CCCCcEE--EEecCCchhhhhhcC----CCceeCCCCC
Q 000983 275 TGQRFLLVLDDVWNEDYRKWEPL------------QQLLKQ-GHKGSRV--LVTSRTARVSQIMGI----RSPYLLEYLP 335 (1199)
Q Consensus 275 ~~k~~LlVlDdvw~~~~~~~~~l------------~~~l~~-~~~gs~i--ivTtR~~~v~~~~~~----~~~~~l~~L~ 335 (1199)
+..--.||+||+.. .-+|-.+ .-.+.. ..+|-|. +-||-...|.+.|+- ...|.+..++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 77888999999933 2344333 222322 2345554 446666777777653 3478888887
Q ss_pred h-hHHHHHHHHHh-cCCCCCCccccchhHHHHHHHHHHhc
Q 000983 336 E-DQCWSIFKKIA-FNQGNFSSRMQQQNLEAIGREIVGKC 373 (1199)
Q Consensus 336 ~-~~~~~lf~~~a-~~~~~~~~~~~~~~~~~~~~~i~~~c 373 (1199)
. ++..+.++..- |.. .+...++.+.+.+|
T Consensus 674 ~~~~~~~vl~~~n~fsd---------~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFSD---------DEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCCc---------chhHHHHHHHhccc
Confidence 6 77777766543 322 33455666777766
No 220
>PRK07261 topology modulation protein; Provisional
Probab=96.60 E-value=0.0046 Score=61.94 Aligned_cols=22 Identities=50% Similarity=0.664 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.|.|+|++|+||||||+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 221
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.0031 Score=67.34 Aligned_cols=80 Identities=24% Similarity=0.257 Sum_probs=47.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
..-+.++|.+|+|||.||.++.+.. ...=-.+.++++. ++..++...... ......+.+.+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~~~~------el~~~Lk~~~~~----~~~~~~l~~~l-----~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFITAP------DLLSKLKAAFDE----GRLEEKLLREL-----KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEEHH------HHHHHHHHHHhc----CchHHHHHHHh-----hc
Confidence 4467899999999999999999953 3322344566543 455555544432 11112222222 22
Q ss_pred eEEEEEecCCCcCccCh
Q 000983 278 RFLLVLDDVWNEDYRKW 294 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~ 294 (1199)
-=||||||+-.+....|
T Consensus 168 ~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 168 VDLLIIDDIGYEPFSQE 184 (254)
T ss_pred CCEEEEecccCccCCHH
Confidence 23899999976544555
No 222
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.60 E-value=0.017 Score=56.10 Aligned_cols=117 Identities=21% Similarity=0.106 Sum_probs=65.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC---CChHHHHHHHHHhc-----ccCC--CCCCc------
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD---YDLPRILKGMIEFH-----SKME--QSTSS------ 262 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~~-----~~~~--~~~~~------ 262 (1199)
..|-|++..|.||||+|...+- +...+=..+.+|.+-+. .....+++.+ ..+ +... .....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 3677888889999999987776 33333234455544443 2233333332 000 0000 00011
Q ss_pred HHHHHHHHHHHhCCCeE-EEEEecCCC---cCccChHHHHHhhhCCCCCcEEEEecCCch
Q 000983 263 ISLLETRLLEFLTGQRF-LLVLDDVWN---EDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1199)
Q Consensus 263 ~~~l~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1199)
.....+..++.+....| |+|||++-. ...-+.+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11122233444444444 999999832 122456788888887777889999999854
No 223
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.58 E-value=0.01 Score=65.47 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=62.1
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc-ccce-eEEEEecCCC-ChHHHHHHHHHhcccC
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-HFES-RMWVCVTVDY-DLPRILKGMIEFHSKM 256 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~ 256 (1199)
..++++.+..-. +-.-+.|+|.+|+|||||++.+++. +.. +-+. ++|+.+.+.. .+.++.+.+...+...
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 345777776543 2335589999999999999999873 332 2233 3676666554 5778888887766543
Q ss_pred CCCCCcHH---------HHHHHHHHHhCCCeEEEEEecC
Q 000983 257 EQSTSSIS---------LLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 257 ~~~~~~~~---------~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
..+..... ...+.+.+ ++++.+||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~--~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVE--QGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEeCc
Confidence 32211111 12222322 589999999999
No 224
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.55 E-value=0.061 Score=58.86 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..+..++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 55789999999999999999999984
No 225
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.55 E-value=0.012 Score=73.86 Aligned_cols=180 Identities=17% Similarity=0.158 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
+++.|.+..++++.+++...-. -.-...+-|.++|.+|+|||+||+++++. ....| +.+.. .
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~----~ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISING----P 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEec----H
Confidence 4588999999888777642100 00123456789999999999999999983 32222 22221 1
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-----------cChHHHHHhhhCC-CCCcEEE
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQG-HKGSRVL 311 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~-~~gs~ii 311 (1199)
++.. . ........+...+.........+|++||++.... .....+...+... ..+..++
T Consensus 247 ~i~~----~-----~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIMS----K-----YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHhc----c-----cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1110 0 0011222333344444456678999999853110 0112333333322 2233344
Q ss_pred E-ecCCch-hhhhh----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH
Q 000983 312 V-TSRTAR-VSQIM----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL 378 (1199)
Q Consensus 312 v-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 378 (1199)
| ||.... +-..+ .....+.+...+.++-.+++..+.-...- . . ......+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~---~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-A---E----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-c---c----ccCHHHHHHhCCCCCH
Confidence 4 454332 21111 12346778888888888888755422111 0 0 1124567777877653
No 226
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.53 E-value=0.013 Score=59.06 Aligned_cols=122 Identities=22% Similarity=0.275 Sum_probs=73.3
Q ss_pred cCCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
+-..++|.+..++.+++-...-. ++....-|.+||.-|+||++|++++.+ .+.+..-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH---------
Confidence 34578999999888875433211 122344567999999999999999998 34433333 2333221
Q ss_pred HHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc-CccChHHHHHhhhCC---CCCcEEEEecCCc
Q 000983 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQG---HKGSRVLVTSRTA 317 (1199)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~---~~gs~iivTtR~~ 317 (1199)
+..+...+.+.|+. ...||.|..||..-+ +.+.+..++.++..+ .+...++..|-++
T Consensus 123 ----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 01112223333333 578999999999643 335677888888643 2444555555543
No 227
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.50 E-value=0.02 Score=66.87 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=83.3
Q ss_pred CccccchhhHHHHHHHHhC---C-CCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000983 171 ANVFGRDDDKERILHMLLS---D-EFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1199)
.++.|.+..++.+...... . ...+-...+-|.++|++|+|||.+|+++++. ....| +.++- ..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~-----~~l~~----~~l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL-----LRLDV----GKLF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE-----EEEEh----HHhc
Confidence 3566776666555432111 0 0001123556889999999999999999983 22222 11111 1111
Q ss_pred HHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-----cC-------hHHHHHhhhCCCCCcEEEEec
Q 000983 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----RK-------WEPLQQLLKQGHKGSRVLVTS 314 (1199)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-----~~-------~~~l~~~l~~~~~gs~iivTt 314 (1199)
.. ....+...+.+.+...-...+++|++|+++..-. .+ ...+...+.....+--||.||
T Consensus 297 ~~---------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 GG---------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred cc---------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 00 0011222333333333345789999999953100 00 111222233333444566677
Q ss_pred CCchhh-hh----hcCCCceeCCCCChhHHHHHHHHHhcCC
Q 000983 315 RTARVS-QI----MGIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1199)
Q Consensus 315 R~~~v~-~~----~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1199)
....-. .. -..+..+.+...+.++-.++|..+....
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 654321 11 1234578888889999999998887543
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.022 Score=63.10 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=57.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH--HHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP--RILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
+.++|+++|.+|+||||++.+++.. ....=..+..++.. .+... +-++...+..+.......+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 4579999999999999999999863 22221233444443 33322 2223333333332222345555665554432
Q ss_pred CC-CeEEEEEecCCCcC--ccChHHHHHhhhCCCCCcEEEE
Q 000983 275 TG-QRFLLVLDDVWNED--YRKWEPLQQLLKQGHKGSRVLV 312 (1199)
Q Consensus 275 ~~-k~~LlVlDdvw~~~--~~~~~~l~~~l~~~~~gs~iiv 312 (1199)
.. +.=+|++|-.-... ......+...+....+-..++|
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 21 22467778764322 1224445555543333333444
No 229
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.016 Score=65.59 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=81.7
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc-------------------ccceeE
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-------------------HFESRM 232 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 232 (1199)
.++|-+....++..+..... .....+-++|++|+||||+|.++++...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677788888888887443 2234588999999999999999997421100 112233
Q ss_pred EEEecCCCC---hHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcE
Q 000983 233 WVCVTVDYD---LPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSR 309 (1199)
Q Consensus 233 wv~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 309 (1199)
.+..+.... ..+..+++.+...... ..++.-++++|+++..+.+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 333333322 1222222222221110 035678999999977665555666666666677888
Q ss_pred EEEecCCc-hhhhhh-cCCCceeCCC
Q 000983 310 VLVTSRTA-RVSQIM-GIRSPYLLEY 333 (1199)
Q Consensus 310 iivTtR~~-~v~~~~-~~~~~~~l~~ 333 (1199)
+|++|... .+.... .....+.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88888743 332221 2223555655
No 230
>PRK04296 thymidine kinase; Provisional
Probab=96.44 E-value=0.0072 Score=61.71 Aligned_cols=114 Identities=14% Similarity=-0.045 Sum_probs=61.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC--CCcHHHHHHHHHHHhCC
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS--TSSISLLETRLLEFLTG 276 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~l~~~l~~ 276 (1199)
.++.|+|..|.||||+|...+. +...+-..++.+. ..++.+.....++.+++..... ......+...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4778999999999999998887 3333333333331 1112222223344444422111 2233444444444 233
Q ss_pred CeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchh
Q 000983 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV 319 (1199)
Q Consensus 277 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 319 (1199)
+.-+||+|.+..-+.++...+...+ ...|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 4458999999433222122233332 3567889999997543
No 231
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.44 E-value=0.034 Score=69.99 Aligned_cols=180 Identities=15% Similarity=0.132 Sum_probs=95.1
Q ss_pred CCccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
-.++.|.+..++++.+.+.-.-. ..-...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 34577888887777665532100 01123445789999999999999999983 33222 22221
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc------Cc-cC-----hHHHHHhhhC--CCCCc
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE------DY-RK-----WEPLQQLLKQ--GHKGS 308 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~------~~-~~-----~~~l~~~l~~--~~~gs 308 (1199)
.+++ .. ....+...+...+...-+....+|++|+++.- .. .. ...+...+.. ...+-
T Consensus 521 ~~l~----~~-----~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PEIL----SK-----WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HHHh----hc-----ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1111 11 01122223333344434566799999998531 00 01 1222223332 22344
Q ss_pred EEEEecCCchhhhh--h---cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 309 RVLVTSRTARVSQI--M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 309 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
-||.||...+..+. . ..+..+.+...+.++-.++|+.+..+... . ...+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~---~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-A---EDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-C---ccCC----HHHHHHHcCCCC
Confidence 56667765543321 1 23457788888888888999766533211 1 1112 345667777654
No 232
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.13 Score=57.50 Aligned_cols=178 Identities=15% Similarity=0.111 Sum_probs=101.7
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccccc---ce-----eEEEEecCCCChHHHHHHHH
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF---ES-----RMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.-+++...+..+. -..-+.+.|+.|+||+++|.+++..--=...- .| +-++.....+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 3456666665443 46678899999999999999887631100000 00 001111111221110
Q ss_pred HhcccCCC-CCCcHHHHHH---HHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhhhh-h
Q 000983 251 EFHSKMEQ-STSSISLLET---RLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQI-M 323 (1199)
Q Consensus 251 ~~~~~~~~-~~~~~~~l~~---~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~ 323 (1199)
..... ..-.++++.+ .+... ..+++=++|+|+++..+......+...+.....++.+|++|.+ ..+... .
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 1122333332 22111 2366779999999877767778888888776677777666665 444433 2
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
+....+.+.+++.++..+.+.... + . . .+.+..++..++|.|....
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~--~-----~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T--M-----S----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C--C-----C----HHHHHHHHHHcCCCHHHHH
Confidence 334578899999999888776532 1 1 1 2336678999999996443
No 233
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.41 E-value=0.011 Score=63.31 Aligned_cols=132 Identities=22% Similarity=0.323 Sum_probs=72.8
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc-cccccccceeE----EEEecCCCC--------
Q 000983 175 GRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE-ERVREHFESRM----WVCVTVDYD-------- 241 (1199)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~----wv~~~~~~~-------- 241 (1199)
+|..+-.--+++|+.++ +..|.+.|.+|.|||.||-+..=. ...++.|...+ -|.+.++..
T Consensus 228 prn~eQ~~ALdlLld~d------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLDDD------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcCCC------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 45666666778887765 889999999999999998655421 12334454432 122333211
Q ss_pred -hHHHHHHHHHhcccCCCC-CCcHHHHHHHH---------HHHhCCC---eEEEEEecCCCcCccChHHHHHhhhCCCCC
Q 000983 242 -LPRILKGMIEFHSKMEQS-TSSISLLETRL---------LEFLTGQ---RFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1199)
Q Consensus 242 -~~~~~~~i~~~~~~~~~~-~~~~~~l~~~l---------~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1199)
+.--.+.|.+.+..-... ......+...+ ..+++++ +-+||+|...+.+. .+++..+...+.|
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G~G 378 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAGEG 378 (436)
T ss_pred hccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhccCC
Confidence 111122222222111111 11111222211 1233454 45899999966543 5667777778999
Q ss_pred cEEEEecC
Q 000983 308 SRVLVTSR 315 (1199)
Q Consensus 308 s~iivTtR 315 (1199)
|||+.|--
T Consensus 379 sKIVl~gd 386 (436)
T COG1875 379 SKIVLTGD 386 (436)
T ss_pred CEEEEcCC
Confidence 99998865
No 234
>PRK04132 replication factor C small subunit; Provisional
Probab=96.37 E-value=0.074 Score=65.87 Aligned_cols=155 Identities=13% Similarity=0.064 Sum_probs=95.2
Q ss_pred CCCCcHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEe
Q 000983 206 MPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLD 284 (1199)
Q Consensus 206 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlD 284 (1199)
+.++||||+|.+++++. ..+.++ ..+-+.++....... .++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999999842 112221 245566665444433 33333322111000 01245799999
Q ss_pred cCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhhhhh-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhH
Q 000983 285 DVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNL 362 (1199)
Q Consensus 285 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~ 362 (1199)
+++..+......+...+......+++|.+|.+ ..+.... .....+.+.+++.++-.+.+...+...+-. -.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-------i~ 710 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-------LT 710 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-------CC
Confidence 99887777778888888765566777666554 3333222 234588999999999888887765432210 11
Q ss_pred HHHHHHHHHhcCCChHHHHHH
Q 000983 363 EAIGREIVGKCKGLPLAVKAI 383 (1199)
Q Consensus 363 ~~~~~~i~~~c~glPLai~~~ 383 (1199)
.+....|++.++|.+-.+..+
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 456788999999988544433
No 235
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.35 E-value=0.016 Score=61.40 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=35.6
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRI 245 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 245 (1199)
..-.++.|+|.+|+|||++|.+++.. ....-..++||+.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 34679999999999999999999873 33334678899887 5555444
No 236
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.35 E-value=0.021 Score=68.25 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=87.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc--ccccc-eeEEEEecC---CCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV--REHFE-SRMWVCVTV---DYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~-~~~wv~~~~---~~~~~~ 244 (1199)
++++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++...- ...|. ..-|+.+.- .++.+.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 368999999988887764432 334568999999999999999863211 12232 123443332 122222
Q ss_pred HHHHHHHhcccCCCC------CCcHHHH-HHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC-------------
Q 000983 245 ILKGMIEFHSKMEQS------TSSISLL-ETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG------------- 304 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~------~~~~~~l-~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------------- 304 (1199)
+...++......... ....... ...+. +...=.|++|++...+......+...+...
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 221221110000000 0000000 00010 223457899999876666666666655321
Q ss_pred ---------------CCCcEEEEe-cCCch-hhhhh-cCCCceeCCCCChhHHHHHHHHHhc
Q 000983 305 ---------------HKGSRVLVT-SRTAR-VSQIM-GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 305 ---------------~~gs~iivT-tR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
....++|++ |++.. +.... .....+.+.+++.+|-.++++..+-
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 112366654 55432 21111 1224677889998888888887664
No 237
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.32 E-value=0.038 Score=58.70 Aligned_cols=173 Identities=23% Similarity=0.291 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc-cccccccceeEEEEecCCCChH-HHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE-ERVREHFESRMWVCVTVDYDLP-RILKG 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~~~~~~~-~~~~~ 248 (1199)
..++|-.++..++-.++..... .+...-+.|+|+.|.|||+|...+..+ .+..++| +-|........+ -.+++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 3578888888888887765321 112345679999999999998877765 1233333 334444433332 23455
Q ss_pred HHHhcccC----CCCCCcHHHHHHHHHHHhC------CCeEEEEEecCCCcCc-cChHHHHHhhh----CCCCCcEEEEe
Q 000983 249 MIEFHSKM----EQSTSSISLLETRLLEFLT------GQRFLLVLDDVWNEDY-RKWEPLQQLLK----QGHKGSRVLVT 313 (1199)
Q Consensus 249 i~~~~~~~----~~~~~~~~~l~~~l~~~l~------~k~~LlVlDdvw~~~~-~~~~~l~~~l~----~~~~gs~iivT 313 (1199)
|..++... .....+..+....+.+.|+ +-++..|+|.++-.-. ..-.-+...+. ...+=+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 55554322 1111222222233333333 2357888888753211 11222333332 23456677889
Q ss_pred cCC-------chhhhhhcCCCceeCCCCChhHHHHHHHHHhc
Q 000983 314 SRT-------ARVSQIMGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 314 tR~-------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
||- ++|-..+....++-+..++-++...++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 995 23444444444666778888888888887663
No 238
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.061 Score=59.78 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCC
Q 000983 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNF 353 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 353 (1199)
+++-++|+|+++..+...+..+...+.....++.+|++|.+ ..+... ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 55668899999888878888898888777777766665554 444333 2334678899999999998887641 1
Q ss_pred CccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 354 SSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
. + ...++..++|.|..+..+.
T Consensus 206 ----~-~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 ----A-D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ----C-h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235778899997655443
No 239
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.32 E-value=0.0081 Score=54.73 Aligned_cols=21 Identities=52% Similarity=0.755 Sum_probs=18.6
Q ss_pred EEEEeCCCCcHHHHHHHHhcc
Q 000983 201 IPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (1199)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998873
No 240
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.32 E-value=0.068 Score=54.48 Aligned_cols=160 Identities=15% Similarity=0.176 Sum_probs=88.7
Q ss_pred CCccccchhhHHH---HHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000983 170 TANVFGRDDDKER---ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1199)
-+++||.++.+.+ |++.|.....=.+...+-|..+|++|.|||-+|+++++..++ -| +.+- ..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at~-- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----ATE-- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hHH--
Confidence 3568898876543 556666543222455778899999999999999999994332 22 1111 111
Q ss_pred HHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC--------ccChHHHHHhh-h-----CCCCCcEEEE
Q 000983 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED--------YRKWEPLQQLL-K-----QGHKGSRVLV 312 (1199)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~--------~~~~~~l~~~l-~-----~~~~gs~iiv 312 (1199)
-|.+..+ +...++.+...+.-+--.+.+.+|.++--. ..+...+..+| . ..+-|-.-|-
T Consensus 187 -liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 -LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1222222 222222222222234568999999884210 01222222232 1 1235655666
Q ss_pred ecCCchhhhhh---cCCCceeCCCCChhHHHHHHHHHhcC
Q 000983 313 TSRTARVSQIM---GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1199)
Q Consensus 313 TtR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1199)
.|...+..+.. .....++...-+++|-.+++...+-.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 66655543321 12346777777889999999888743
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.31 E-value=0.0046 Score=59.57 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=60.9
Q ss_pred ccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc-ccccceeEEEEecCCCChHHHHHHHHHh
Q 000983 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-REHFESRMWVCVTVDYDLPRILKGMIEF 252 (1199)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1199)
||....+.++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|... .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 456666666655554322 12335679999999999999999874221 1122110 0000
Q ss_pred cccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC-CCCcEEEEecCCc
Q 000983 253 HSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGSRVLVTSRTA 317 (1199)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~ 317 (1199)
.. .+.+.+ -+.--|+++|+..-+.+....+...+... ....|+|.||+..
T Consensus 60 --------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 --------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 13445779999776666667777777643 5678999999853
No 242
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00038 Score=70.88 Aligned_cols=82 Identities=29% Similarity=0.289 Sum_probs=63.0
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccch--hhcccccccee
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPK--DLANLVKLRNL 666 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 666 (1199)
.+.+.+.|++.||.+..+. -+.+|+.|++|.|+-|+|+.| ..+..|++|+.|.|+.|. +.++-+ -+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 4667788888898888663 356788899999999998888 458888999999998877 444432 45788888888
Q ss_pred ecccccc
Q 000983 667 ELEEMFW 673 (1199)
Q Consensus 667 ~l~~n~~ 673 (1199)
.|..|.+
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 8888754
No 243
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0017 Score=66.42 Aligned_cols=83 Identities=23% Similarity=0.191 Sum_probs=44.0
Q ss_pred CccccEEeccCCCccccchhhcccCcccEEecCCC--CcccccchhhccccccceeecccccccccccCCCCcCCccccC
Q 000983 613 LKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGC--IWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLH 690 (1199)
Q Consensus 613 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~ 690 (1199)
+..|.+|++.+..++.+ ..+-.|++|++|+++.| +..+.++....++++|++|++++|++..+..++ .+.++.+|.
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchh
Confidence 34444455555444433 22344566666666666 444555555555666677766666554333332 234555555
Q ss_pred ccCeEEe
Q 000983 691 NLHVFRV 697 (1199)
Q Consensus 691 ~L~l~~~ 697 (1199)
.|+++.|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 6666554
No 244
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.25 E-value=0.015 Score=60.85 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34679999999999999999998863 333456789999876 66555443
No 245
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.24 E-value=0.019 Score=56.95 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=66.4
Q ss_pred cccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC-CCChHHHHHHHHH
Q 000983 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV-DYDLPRILKGMIE 251 (1199)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~ 251 (1199)
+||....+.++++.+..-. ..+.+ |.|+|..|+||+.+|+.+++... + ...-||.+.- .++.+.+-.++..
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~~p-VlI~GE~GtGK~~lA~~IH~~s~-r---~~~pfi~vnc~~~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSDLP-VLITGETGTGKELLARAIHNNSP-R---KNGPFISVNCAALPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TSTS--EEEECSTTSSHHHHHHHHHHCST-T---TTS-EEEEETTTS-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHh---CCCCC-EEEEcCCCCcHHHHHHHHHHhhh-c---ccCCeEEEehhhhhcchhhhhhhc
Confidence 4677777777777765543 12244 45999999999999999998321 1 1122344432 2233333333333
Q ss_pred hcccCCCC--CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC------C-----CCcEEEEecCC
Q 000983 252 FHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG------H-----KGSRVLVTSRT 316 (1199)
Q Consensus 252 ~~~~~~~~--~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iivTtR~ 316 (1199)
........ ..... .+.+ -..=-|+||+|.......-..+...+..+ . ...|||.||..
T Consensus 73 ~~~~~~~~~~~~~~G----~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEKGAFTGARSDKKG----LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCSSSSTTTSSEBEH----HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccccCC----ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 22111111 11111 1222 12235789999766555556666666432 1 25689988884
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.017 Score=66.90 Aligned_cols=189 Identities=15% Similarity=0.171 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc--cccceeEEEEecCCCChHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR--EHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
+++||-+.-...+...+.... -..-....|.-|+||||+||-++....-. ...+ .+.+...-+.+...
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e-----PC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE-----PCGKCISCKEINEG 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC-----cchhhhhhHhhhcC
Confidence 457999999999988887654 34455678999999999999888632111 1111 11111111111111
Q ss_pred -HHHhcccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecC-Cchhh-h
Q 000983 249 -MIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSR-TARVS-Q 321 (1199)
Q Consensus 249 -i~~~~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~-~ 321 (1199)
.++-+.........++++.+.+.+. .++|-=+.|+|.|+-.+...|..+...+......-+.|..|. ...+. .
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0000111111123344433333222 134555889999987777788888877765555665555444 44443 3
Q ss_pred hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCC
Q 000983 322 IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL 376 (1199)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 376 (1199)
.......|.++.++.++-...+...+-..+-. -..+...-|++..+|.
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~-------~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN-------IEEDALSLIARAAEGS 213 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCc-------cCHHHHHHHHHHcCCC
Confidence 34445689999999998888888777544321 1234455566666553
No 247
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.20 E-value=0.0037 Score=58.80 Aligned_cols=21 Identities=57% Similarity=0.711 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
||.|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.19 E-value=0.018 Score=71.14 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=69.3
Q ss_pred CccccchhhHHHHHHHHhCCC---CCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..++|-+..++.+...+.... .........+.++|++|+|||++|+.++.. ... ..+.+..+.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----
Confidence 357898888888888776321 011234567899999999999999999873 222 22333333221111
Q ss_pred HHHHhcccCCCC-C-CcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhC
Q 000983 248 GMIEFHSKMEQS-T-SSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ 303 (1199)
Q Consensus 248 ~i~~~~~~~~~~-~-~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~ 303 (1199)
.+.+-++..... . .....+.+.+++ ...-+|+||++...+.+.+..+...+..
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~~v~~---~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred cHHHHcCCCCCcccccccchHHHHHHh---CCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 111112211110 1 111223333322 3346999999988777778888877754
No 249
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.17 E-value=0.03 Score=59.42 Aligned_cols=89 Identities=18% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhccccccccc------ceeEEEEecCCCChHHHHHHHHHhcccCC---------CCC
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF------ESRMWVCVTVDYDLPRILKGMIEFHSKME---------QST 260 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~---------~~~ 260 (1199)
..-.++.|+|.+|+|||+||.+++.. ....- ..++|+.....++...+. .+.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 34669999999999999999998763 22222 467899888777765543 3333221110 012
Q ss_pred CcHHHHHHHHHHHhC----CCeEEEEEecCC
Q 000983 261 SSISLLETRLLEFLT----GQRFLLVLDDVW 287 (1199)
Q Consensus 261 ~~~~~l~~~l~~~l~----~k~~LlVlDdvw 287 (1199)
.+.+++...+.+..+ .+--|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 334444444444332 344588999873
No 250
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.16 E-value=0.25 Score=55.76 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=30.8
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+.+.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 4 ~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 4 YAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455666665542 256889999999999999999999874
No 251
>PHA00729 NTP-binding motif containing protein
Probab=96.15 E-value=0.012 Score=60.50 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...|.|.|.+|+||||||.++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999873
No 252
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.13 E-value=0.0099 Score=59.12 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=78.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC---CCcHHHHHHHHHHHhCC
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS---TSSISLLETRLLEFLTG 276 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~l~~~l~~~l~~ 276 (1199)
++.|.|.+|.||||+|..+.... .. ..+++.-...+ ..+..+.|.......... ......+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68899999999999999998631 11 22333333333 334555554443322211 11122344445443332
Q ss_pred CeEEEEEecC--CCc-----Cc-cCh----HHHHHhhhCCCCCcEEEEecCCchhhhhhcCCCceeCCCCChhHHHHHHH
Q 000983 277 QRFLLVLDDV--WNE-----DY-RKW----EPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1199)
Q Consensus 277 k~~LlVlDdv--w~~-----~~-~~~----~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1199)
.-++|+|.+ |-. +. ..| ..+...+. ..+..+|+|+... -....+.++.-..|.
T Consensus 77 -~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Ev------------g~g~vp~~~~~r~~~ 141 (170)
T PRK05800 77 -GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEV------------GMGIVPEYRLGRHFR 141 (170)
T ss_pred -CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCC------------cccccCCCHHHHHHH
Confidence 237889987 210 10 122 22333333 3455566666421 122334555666676
Q ss_pred HHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
..++. .++.+...|+++.....|+|+-+
T Consensus 142 d~lG~--------lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAGR--------LNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHHH--------HHHHHHHHCCEEEEEeCCCcEec
Confidence 66642 34455566666666667888654
No 253
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.091 Score=60.25 Aligned_cols=194 Identities=18% Similarity=0.200 Sum_probs=102.3
Q ss_pred CccccchhhHHHHHHHHhCCCCC------CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFD------EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.++-|.+....++.+++..-..+ +-...+=|.++|++|.|||.||+++++. ..-.| +.++. .+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isA----pe 258 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISA----PE 258 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecc----hh
Confidence 45678888888877766532111 1234566789999999999999999984 33223 22221 11
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-cCh----------HHHHHhhhC----CCCCcE
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-RKW----------EPLQQLLKQ----GHKGSR 309 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-~~~----------~~l~~~l~~----~~~gs~ 309 (1199)
|+..+. ..+.+.+.+.+.+.-..-.+++++|+++--.. .+| .++...+.. ...|-.
T Consensus 259 ----ivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 259 ----IVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ----hhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 222221 34445566666666677899999999953211 111 122222211 112333
Q ss_pred EEE---ecCCchhh---hhhc-CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 310 VLV---TSRTARVS---QIMG-IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 310 iiv---TtR~~~v~---~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
||| |+|-..+- ...| .+..|.+.--++.+-.++++..+-+-... ..-+++++|+.--...|---.|+..
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~----g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS----GDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC----CCcCHHHHHhcCCCccchhHHHHHH
Confidence 443 44532221 1122 23567777777766666776665433221 1223444444333334444456666
Q ss_pred HHHhhc
Q 000983 383 IAGFLR 388 (1199)
Q Consensus 383 ~~~~l~ 388 (1199)
.|+..+
T Consensus 406 ~Aa~vA 411 (802)
T KOG0733|consen 406 EAAFVA 411 (802)
T ss_pred HHHHHH
Confidence 665554
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.024 Score=63.77 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...++.++|++|+||||+|.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 255
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.024 Score=68.52 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=84.8
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc-cccc-----eeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-EHFE-----SRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-----~~~wv~~~~~~~~~~ 244 (1199)
+.++||++|++++++.|.... .+-+| ++|-+|||||++|.-++. ++. +.-+ ..++ +.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~----KNNPv--LiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~-sL-------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT----KNNPV--LVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIY-SL-------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC----CCCCe--EecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEE-Ee--------
Confidence 568999999999999997654 22223 689999999999877776 222 1111 1110 00
Q ss_pred HHHHHHHhcccCCCCCCcHHH-HHHHHHHHhCCCeEEEEEecCCCc---------CccChHHHHHhhhCCCCCcEEEEec
Q 000983 245 ILKGMIEFHSKMEQSTSSISL-LETRLLEFLTGQRFLLVLDDVWNE---------DYRKWEPLQQLLKQGHKGSRVLVTS 314 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~-l~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTt 314 (1199)
++..-..+... ..+.++ +...+.+.-+.++..|++|.++.- ..+.-.-++++|.. +.--.|=.||
T Consensus 233 ---D~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 233 ---DLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred ---cHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 11111111111 222333 333333333455899999998631 01222334444433 2223455666
Q ss_pred CCchh------hhhhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 315 RTARV------SQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 315 R~~~v------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
-++.- +..-.....+.+...+.+++...++-..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 54321 1112334678899999999999887544
No 256
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.08 E-value=0.022 Score=60.93 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=37.1
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccc----cceeEEEEecCCCChHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREH----FESRMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~ 246 (1199)
..-.++.|+|.+|+|||++|.+++-....... -..++|++....++..++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 34679999999999999999999753222221 3578999988877765543
No 257
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.07 E-value=0.022 Score=58.15 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=47.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC--hHHHHHHHHHhcccCCCC---C-CcHHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD--LPRILKGMIEFHSKMEQS---T-SSISLLETRLL 271 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~---~-~~~~~l~~~l~ 271 (1199)
++||.++|+.|+||||.+.+++.. .+..-..+..++.. .+. ..+-++..++.++..... . +..+.+.+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D-~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISAD-TYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEES-TSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCC-CCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 369999999999999999988874 33333345566653 333 344456666666644211 2 22233333343
Q ss_pred HHhCCCeEEEEEecC
Q 000983 272 EFLTGQRFLLVLDDV 286 (1199)
Q Consensus 272 ~~l~~k~~LlVlDdv 286 (1199)
+.-..+.=+|++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 322222336667755
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.02 E-value=0.03 Score=55.87 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=29.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD 241 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 241 (1199)
++.|+|.+|+||||+|..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3679999999999999999873 233334567777765543
No 259
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.00 E-value=0.016 Score=61.49 Aligned_cols=87 Identities=22% Similarity=0.287 Sum_probs=51.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccce-eEEEEecCCC-ChHHHHHHHHHhcccC-------CCCCCcHH----
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDY-DLPRILKGMIEFHSKM-------EQSTSSIS---- 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~~~~~~---- 264 (1199)
-+-++|.|..|+||||||+.+++ .++.+|+. ++++-+.+.. .+.++.+++.+.-... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44678999999999999999998 45545543 4455555544 3445555554321110 00111111
Q ss_pred -HHHHHHHHHh--C-CCeEEEEEecC
Q 000983 265 -LLETRLLEFL--T-GQRFLLVLDDV 286 (1199)
Q Consensus 265 -~l~~~l~~~l--~-~k~~LlVlDdv 286 (1199)
...-.+.+++ + ++.+|+|+||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122334444 3 89999999999
No 260
>PHA02244 ATPase-like protein
Probab=95.98 E-value=0.038 Score=60.94 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=26.3
Q ss_pred hhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.....+..++..+. -|.|+|.+|+|||+||+++++.
T Consensus 107 ~~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 107 YETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHH
Confidence 34455666664432 3568999999999999999973
No 261
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.97 E-value=0.017 Score=59.49 Aligned_cols=108 Identities=13% Similarity=0.170 Sum_probs=58.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH---HHHHhcccCCCCCCcHHHHHHHHHHHhCC
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK---GMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~l~~~l~~~l~~ 276 (1199)
+|.|+|+.|.||||+++.+.. .........+++- .... +.... .++.+. ....+.....+.++..++.
T Consensus 3 lilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPI--EFVHESKRSLINQR----EVGLDTLSFENALKAALRQ 73 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCc--cccccCccceeeec----ccCCCccCHHHHHHHHhcC
Confidence 789999999999999998876 2333333344332 1111 10000 011110 0111223355667777776
Q ss_pred CeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhh
Q 000983 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 277 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1199)
..=.|++|++.+. +.+.. .+.....|..++.|+-...+..
T Consensus 74 ~pd~ii~gEird~--e~~~~---~l~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 74 DPDVILVGEMRDL--ETIRL---ALTAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CcCEEEEcCCCCH--HHHHH---HHHHHHcCCEEEEEecCCcHHH
Confidence 6779999999532 23333 3332335666888877665543
No 262
>PRK13695 putative NTPase; Provisional
Probab=95.97 E-value=0.014 Score=58.81 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 263
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=0.041 Score=56.71 Aligned_cols=185 Identities=14% Similarity=0.176 Sum_probs=106.2
Q ss_pred cccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc----cccccceeEEEEecCC---------
Q 000983 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER----VREHFESRMWVCVTVD--------- 239 (1199)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~~~~~--------- 239 (1199)
+.++++....+....... +..-..++|+.|.||-|.+..+.+.-. .+-.-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~~------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcccC------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 556677777776665433 366778999999999998877766311 1122344455544432
Q ss_pred -C-----------ChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCC-CeE-EEEEecCCCcCccChHHHHHhhhCCC
Q 000983 240 -Y-----------DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG-QRF-LLVLDDVWNEDYRKWEPLQQLLKQGH 305 (1199)
Q Consensus 240 -~-----------~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~-k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~ 305 (1199)
+ .-+.+.++++.+.....+. + .++ +.| ++|+-.++..+.+.-..++.....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi------------e-~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI------------E-TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch------------h-hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 1123333333333221110 0 112 334 66777775554455556666665556
Q ss_pred CCcEEEEecCCc-hh-hhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHH
Q 000983 306 KGSRVLVTSRTA-RV-SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKA 382 (1199)
Q Consensus 306 ~gs~iivTtR~~-~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~ 382 (1199)
..+|+|+...+- .+ ...-...-.+.+...+++|-...+++.+-..+-. -| ++++.+|+++++|.- -||-+
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~-----lp--~~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ-----LP--KELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc-----Cc--HHHHHHHHHHhcccHHHHHHH
Confidence 778888754321 11 1111222457889999999999999887654431 12 688999999988765 44433
Q ss_pred H
Q 000983 383 I 383 (1199)
Q Consensus 383 ~ 383 (1199)
+
T Consensus 229 l 229 (351)
T KOG2035|consen 229 L 229 (351)
T ss_pred H
Confidence 3
No 264
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.88 E-value=0.0039 Score=37.85 Aligned_cols=19 Identities=42% Similarity=0.772 Sum_probs=9.7
Q ss_pred ccEEeccCCCccccchhhc
Q 000983 616 LRYLDLSRTEIKVLPNSIC 634 (1199)
Q Consensus 616 Lr~L~L~~~~i~~lp~~i~ 634 (1199)
|++|+|++|.++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554444
No 265
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.87 E-value=0.00059 Score=82.38 Aligned_cols=202 Identities=26% Similarity=0.404 Sum_probs=110.7
Q ss_pred cccccEEEecCCCCCCCC------CCCCCCCcEEEccc-cccCCCC-----CcccccccceeeecCCCC--CccccCCC-
Q 000983 926 FQTLLEMKAINCPKLRGL------PQIFAPQKLEISGC-DLLSTLP-----NSEFSQRLQLLALEGCPD--GTLVRAIP- 990 (1199)
Q Consensus 926 ~~~L~~L~l~~c~~L~~l------~~~~~l~~L~l~~~-~~~~~~p-----~~~~~~~L~~L~l~~~~~--~~~~~~l~- 990 (1199)
++.|+.+.+..|..+... ..++.++.|++++| ......+ ....+.+|+.|++++|.. ......+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 577777777777776642 24556777888773 2222222 123457888888888872 22222222
Q ss_pred CCCCCCEEeecCCCCCCCCC--C-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCC---CCCCcCCCCCcc
Q 000983 991 ETSSLNFLILSKISNLDSFP--R-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGC---PKLETLPDEGLP 1064 (1199)
Q Consensus 991 ~l~sL~~L~L~~n~~l~~~~--~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c---~~l~~l~~~~~~ 1064 (1199)
.|++|+.|.+.+|..++... . ...+++|++|++++|..++.........++++|+.|.+..+ +.++.+......
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 37788888888886532211 1 25677888888888887644322223444555555544443 334433221111
Q ss_pred ---C-CcceEEeccCCCCcccCCCCCCCCCCCCC-ceeecCCCCCC-CCCCC-CCCCCcCeEEccCCcchHH
Q 000983 1065 ---T-SLKCLIIASCSGLKSLGPRGTLKSLNSLK-DFYIEDCPLLQ-SFPED-GLPENLQHLVIQNCPLLTQ 1129 (1199)
Q Consensus 1065 ---~-sL~~L~l~~c~~L~~lp~~~~l~~l~sL~-~L~i~~c~~l~-~lp~~-~l~~sL~~L~i~~c~~L~~ 1129 (1199)
. .+..+.+.+|+.++.+.. ......... .+.+.+|+.++ ++... ....+++.|.+..|..++.
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSL--SYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhh--hhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 1 566666677776666533 111123333 46677777772 22211 1112377888888766554
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.0075 Score=56.83 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
--|.|.||+|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46789999999999999999983
No 267
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.12 Score=54.72 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=29.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccc--cccceeEEEEe
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVR--EHFESRMWVCV 236 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~ 236 (1199)
-++|.++|++|.|||+|+++++....++ ..+.....+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 3689999999999999999999865444 44444444443
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.82 E-value=0.028 Score=61.33 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=46.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC--hHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD--LPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
..++++|+|++|+||||++..++.....+..-..+..|+... +. ..+.+..-.+.++.......+...+...+.. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~-~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT-YRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc-cchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 457999999999999999999987332221112345555432 22 1222222233333322223344455555543 3
Q ss_pred CCCeEEEEEecC
Q 000983 275 TGQRFLLVLDDV 286 (1199)
Q Consensus 275 ~~k~~LlVlDdv 286 (1199)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 346777753
No 269
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0024 Score=65.36 Aligned_cols=107 Identities=24% Similarity=0.207 Sum_probs=58.7
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCC--Ccc-ccchhhcccCcccEEecCCCCcccccchh---hccccc
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRT--EIK-VLPNSICNLYNLQTLKLIGCIWIMELPKD---LANLVK 662 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~ 662 (1199)
.+..|..|++.+..++.+ ..+-.|++|++|.++.| ++. .++-...++++|++|++++|++. . +++ +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcc
Confidence 344455555555555433 12445667777777777 443 44444555677777777777632 1 222 345666
Q ss_pred cceeecccccccccccCCC-CcCCccccCccCeEEec
Q 000983 663 LRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 663 L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 698 (1199)
|..|++.+|..+++..--. .+.-+++|.+|+...+.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 6677777765443321111 12345677777766543
No 270
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.80 E-value=0.018 Score=57.17 Aligned_cols=148 Identities=20% Similarity=0.282 Sum_probs=79.0
Q ss_pred EEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC---CCcHHHHHHHHHHHhCCC
Q 000983 201 IPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS---TSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~l~~~l~~~l~~k 277 (1199)
+.|.|.+|.|||++|.++... ....++++.-.+.++. ++.+.|.......... ......+.+.+.+. + +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 678999999999999999752 2235667766666654 3444444332222111 22223344444221 2 2
Q ss_pred eEEEEEecC--CC-----cCc--------cChHHHHHhhhCCCCCcEEEEecCCchhhhhhcCCCceeCCCCChhHHHHH
Q 000983 278 RFLLVLDDV--WN-----EDY--------RKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPEDQCWSI 342 (1199)
Q Consensus 278 ~~LlVlDdv--w~-----~~~--------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~l 342 (1199)
.-.+++|.+ |- .+. ..+..+...+. ..+..+|++|. +|. ....+.++.-..
T Consensus 74 ~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsn--EvG----------~g~vp~~~~~r~ 139 (169)
T cd00544 74 GDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSN--EVG----------LGVVPENALGRR 139 (169)
T ss_pred CCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEEC--CcC----------CCCCCCCHHHHH
Confidence 337999987 21 100 11112333333 24555666664 232 233455666677
Q ss_pred HHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH
Q 000983 343 FKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL 378 (1199)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 378 (1199)
|...++. .++.+...|.++.....|+|+
T Consensus 140 f~d~lG~--------lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 140 FRDELGR--------LNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHH--------HHHHHHHHCCEEEEEECCcce
Confidence 7776643 344556666666666677775
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.76 E-value=0.0066 Score=70.11 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=40.0
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+++|.++.+++|+..|.....+-...-+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999998433211234567999999999999999999997
No 272
>PRK06696 uridine kinase; Validated
Probab=95.76 E-value=0.012 Score=62.09 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
|++-+++|.+.+.... .....+|+|.|.+|+||||+|+++..
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5666777777776532 34578999999999999999999997
No 273
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.75 E-value=0.046 Score=57.60 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=32.1
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD 241 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 241 (1199)
..-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 34679999999999999999999863 323334567887655543
No 274
>PRK08233 hypothetical protein; Provisional
Probab=95.74 E-value=0.03 Score=57.10 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..+|+|.|.+|+||||||+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.74 E-value=0.089 Score=53.36 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=63.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEec--CCCChHHHHHH------HHHhcccCC-----CCCCcHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT--VDYDLPRILKG------MIEFHSKME-----QSTSSIS 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~~~------i~~~~~~~~-----~~~~~~~ 264 (1199)
-.+++|+|..|.|||||++.++-. .......+++.-. ...+....... +++.++... ...-+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 448999999999999999999863 2223334443211 11122221111 333333221 1111111
Q ss_pred -HHHHHHHHHhCCCeEEEEEecCCC-cCccChHHHHHhhhCC-CC-CcEEEEecCCchhh
Q 000983 265 -LLETRLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HK-GSRVLVTSRTARVS 320 (1199)
Q Consensus 265 -~l~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~ 320 (1199)
...-.+.+.+-..+-++++|+--. .|....+.+...+... .. |..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222335555667788999998732 2223344555555432 22 66788888876554
No 276
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.058 Score=60.61 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=57.7
Q ss_pred Cccccch---hhHHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRD---DDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.++-|-| .|+++|++.|.++.- -...=++=|.++|++|.|||-||++|+-...+- +|......|+..-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDEMF 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhhhh
Confidence 3455665 467778888876531 112335567899999999999999999743332 2333334443211
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCC
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVW 287 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw 287 (1199)
+ ......+.+.+.+.-+.-+++|.+|.++
T Consensus 378 V--------------GvGArRVRdLF~aAk~~APcIIFIDEiD 406 (752)
T KOG0734|consen 378 V--------------GVGARRVRDLFAAAKARAPCIIFIDEID 406 (752)
T ss_pred h--------------cccHHHHHHHHHHHHhcCCeEEEEechh
Confidence 1 1122233333334335668999999985
No 277
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.1 Score=58.01 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=46.5
Q ss_pred CCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhhh-cCCCceeCCCCChhHHHHHHHHH
Q 000983 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIM-GIRSPYLLEYLPEDQCWSIFKKI 346 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 346 (1199)
+++-++|+|++...+......+...+.....+..+|++|.+. .+.... .....+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 444456678887766666677777776554556677777664 343322 22357889999999988877653
No 278
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.70 E-value=0.088 Score=51.00 Aligned_cols=105 Identities=29% Similarity=0.244 Sum_probs=57.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
-.+++|+|..|.|||||++.+.... ......+|+.-.. .+..... -..-+...-.+...+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhcC
Confidence 4589999999999999999998632 2223333332100 0000000 001111122344555667
Q ss_pred eEEEEEecCCC-cCccChHHHHHhhhCCCCCcEEEEecCCchhhh
Q 000983 278 RFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 278 ~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1199)
.-++++|+--. -|....+.+...+... +..||++|.+...+.
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 77899998732 2333445555555543 246888887765543
No 279
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.69 E-value=0.011 Score=60.65 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=51.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh---
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL--- 274 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l--- 274 (1199)
-+++.|.|.+|.||||+++.+... .... ...+.+..........+... .+.. ..++.. .+...-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~----~~~~---a~Ti~~---~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK----TGIE---AQTIHS---FLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH----HTS----EEEHHH---HTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh----hCcc---hhhHHH---HHhcCCccc
Confidence 357888999999999999998863 2222 23333333333222232222 1110 011111 110000
Q ss_pred ------CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC
Q 000983 275 ------TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1199)
Q Consensus 275 ------~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1199)
..++-+||+|++...+...+..+....+. .|+|+|+.=-.
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12345999999977665566666665543 57888865443
No 280
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.67 E-value=0.011 Score=58.96 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=49.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccc-cccceeEEEEecCCCCh---HHHHHHHHHhcccCCCCCCcHHHHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVR-EHFESRMWVCVTVDYDL---PRILKGMIEFHSKMEQSTSSISLLETRLLEF 273 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~ 273 (1199)
..++.+.|+.|+|||.||++++. .+. +.....+-+..+.-... ............ .... .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~------~~v~-----~--- 66 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPP------GYVG-----A--- 66 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTT------CHHH-----H---
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhccc------ceee-----c---
Confidence 56888999999999999999997 333 23334444444432220 111111111000 0000 0
Q ss_pred hCCCeEEEEEecCCCcCc-----------cChHHHHHhhhC
Q 000983 274 LTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQ 303 (1199)
Q Consensus 274 l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~ 303 (1199)
...-+|+||+++.... ..|..+...+..
T Consensus 67 --~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 67 --EEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp --HHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred --cchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 0111999999988877 678888887753
No 281
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.65 E-value=0.08 Score=61.19 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=53.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
.+++.++|++|+||||++.+++........-..+..|+... +.. .+-++...+.++.......+...+...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 46999999999999999988876322112223455665432 221 122222233333332223344555555544 23
Q ss_pred CCeEEEEEecCCCc--CccChHHHHHhhh
Q 000983 276 GQRFLLVLDDVWNE--DYRKWEPLQQLLK 302 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~--~~~~~~~l~~~l~ 302 (1199)
..=+||+|..-.. +....+.+...+.
T Consensus 299 -~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 -DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred -CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 3457888866322 2222344555544
No 282
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.21 Score=60.18 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=99.7
Q ss_pred Cccccchhh---HHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDD---KERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~---~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.++.|-++. +.++++.|..+.. ....-++=+-++|++|.|||-||++++-...+- |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH-----
Confidence 457777754 5555666665421 123445667799999999999999999743322 3444321
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC------------c---cChHHHHHhhhCCCCCcE
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED------------Y---RKWEPLQQLLKQGHKGSR 309 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~------------~---~~~~~l~~~l~~~~~gs~ 309 (1199)
+..+.+... ....+.+.+...=...+..|.+|+++... . ..+.++..-+.....+..
T Consensus 379 ---EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 112222111 11112222222224567888888874211 0 112333333333333333
Q ss_pred E--EEecCCchhhhhh-----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHH
Q 000983 310 V--LVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLA 379 (1199)
Q Consensus 310 i--ivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 379 (1199)
| |-+|...++.+.. .-+..+.++.-+.....++|+-++-...- ..+..++++ |+...-|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~------~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL------DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC------CcchhhHHH-HHhcCCCCcHH
Confidence 3 3356655554321 23457788888888999999988865432 123455555 88887777743
No 283
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.59 E-value=0.042 Score=64.31 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=56.1
Q ss_pred CCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 195 EDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
...-+|..++|++|+||||||.-|+++. .| .++=|.+|...+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 4456799999999999999999999742 22 3456677777666655555544332211 11
Q ss_pred --CCCeEEEEEecCCCcCccChHHHHHhh
Q 000983 275 --TGQRFLLVLDDVWNEDYRKWEPLQQLL 301 (1199)
Q Consensus 275 --~~k~~LlVlDdvw~~~~~~~~~l~~~l 301 (1199)
.++..-||+|.++.......+.+...+
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHH
Confidence 267788999999765432334444444
No 284
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.58 E-value=0.21 Score=47.87 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHhcccC-ChHHHHHHHHHHHHHhhh
Q 000983 2 AELVVSLVVQPIVEKAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEERQLK-VPQLKDWLGKLRNAAYDA 80 (1199)
Q Consensus 2 ae~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~lr~~~yd~ 80 (1199)
||.++|++++++++.++.. +.+.......++.-+++|...++.|.-++.+.+..... +..-+.-++++.+...++
T Consensus 3 ~eL~~gaalG~~~~eLlk~----v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKA----VIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHH
Confidence 6777777777777766655 44555555677888999999999999999999875332 222367788999999999
Q ss_pred HHHHHHHH
Q 000983 81 EDILETFA 88 (1199)
Q Consensus 81 ed~ld~~~ 88 (1199)
+++++.|.
T Consensus 79 ~~LV~k~s 86 (147)
T PF05659_consen 79 KELVEKCS 86 (147)
T ss_pred HHHHHHhc
Confidence 99999884
No 285
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.57 E-value=0.073 Score=53.28 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=63.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhccc---ccccc---cc--eeEEEEecCCCChHHHHHHHHHhcccCCC-C-----CCcH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEE---RVREH---FE--SRMWVCVTVDYDLPRILKGMIEFHSKMEQ-S-----TSSI 263 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-~-----~~~~ 263 (1199)
-.+++|+|..|.|||||.+.+..+. ++... |. ...|+ .+ .+.++.++.... . ..+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3489999999999999999986421 11111 11 12222 22 344455443211 1 1111
Q ss_pred H-HHHHHHHHHhCCC--eEEEEEecCCC-cCccChHHHHHhhhCC-CCCcEEEEecCCchhhhhhcCCCceeC
Q 000983 264 S-LLETRLLEFLTGQ--RFLLVLDDVWN-EDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1199)
Q Consensus 264 ~-~l~~~l~~~l~~k--~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1199)
. ...-.+...+-.+ .-++++|+--. -+....+.+...+... ..|..||++|.+...... .+..+.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 2222344455556 67888898732 2223334444444332 246678888888766542 4444444
No 286
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.53 E-value=0.091 Score=53.21 Aligned_cols=118 Identities=18% Similarity=0.113 Sum_probs=59.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhccc--CC------------CCCCcH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK--ME------------QSTSSI 263 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~--~~------------~~~~~~ 263 (1199)
-.+++|+|..|.|||||++.++--.. .-...+++.-. +...........+.. .. ...-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 34899999999999999999986321 11222322111 111110011111100 00 001111
Q ss_pred -HHHHHHHHHHhCCCeEEEEEecCCC-cCccChHHHHHhhhCCCCCcEEEEecCCchhhh
Q 000983 264 -SLLETRLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 264 -~~l~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1199)
+...-.+...+-.++=++++|+... .|....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1122234555667778899998843 222333445555543334677888888876654
No 287
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.098 Score=59.21 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=58.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhccccccc--ccceeEEEEecCCCChHH--HHHHHHHhcccCCCCCCcHHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVRE--HFESRMWVCVTVDYDLPR--ILKGMIEFHSKMEQSTSSISLLETRLLE 272 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~l~~ 272 (1199)
..++|.++|..|+||||.+.+++....... +=..+..|++. .+.... -++..++.++.+.........+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 357999999999999999999987322211 11234444443 443322 2444555555443334455666666655
Q ss_pred HhCCCeEEEEEecCCCcCc--cChHHHHHhhhC
Q 000983 273 FLTGQRFLLVLDDVWNEDY--RKWEPLQQLLKQ 303 (1199)
Q Consensus 273 ~l~~k~~LlVlDdvw~~~~--~~~~~l~~~l~~ 303 (1199)
. .+.-+|++|..-.... .....+...+..
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3 3456888898854321 123455555543
No 288
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.51 E-value=0.017 Score=56.09 Aligned_cols=21 Identities=48% Similarity=0.686 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
||.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 289
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.51 E-value=0.027 Score=61.71 Aligned_cols=85 Identities=18% Similarity=0.079 Sum_probs=52.5
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCC-----CCCCcHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME-----QSTSSISLLETRL 270 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l~~~l 270 (1199)
..-+++-|+|.+|+||||||.++... ....-..++||+....++.. .++.++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999988763 33334566788877666543 233332211 1123344444444
Q ss_pred HHHhC-CCeEEEEEecCC
Q 000983 271 LEFLT-GQRFLLVLDDVW 287 (1199)
Q Consensus 271 ~~~l~-~k~~LlVlDdvw 287 (1199)
....+ +.--+||+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 456699999983
No 290
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.092 Score=52.75 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=63.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC--CCChHHHHHHHHHhccc--CCCC--C-------CcHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV--DYDLPRILKGMIEFHSK--MEQS--T-------SSIS 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~~~~--~~~~--~-------~~~~ 264 (1199)
-.+++|+|..|.|||||.+.++.-. ......+++.-.. ........ ..+.. .... . -+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESLR----KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHHH----hhEEEEcCCchhccchHHHHhhCHH
Confidence 4489999999999999999998732 2223333332110 00111110 11110 0000 0 1111
Q ss_pred H-HHHHHHHHhCCCeEEEEEecCCC-cCccChHHHHHhhhCCCCCcEEEEecCCchhhhhhcCCCceeC
Q 000983 265 L-LETRLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1199)
Q Consensus 265 ~-l~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1199)
+ ..-.+...+..+.-++++|+-.. .|....+.+...+.....+..||++|.+...... .+..+.+
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 11234555667778999998742 2223344555555433345678888888766543 3444443
No 291
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.49 E-value=0.04 Score=62.01 Aligned_cols=110 Identities=24% Similarity=0.236 Sum_probs=68.3
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
.++|+++.+..+...+..+. -+.+.|.+|+|||+||+.++. .... ...+|.+.......++.....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcCchhH
Confidence 37898888888888777654 567999999999999999997 3332 3356677777766665433322
Q ss_pred hcc---cCCCC-CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhC
Q 000983 252 FHS---KMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ 303 (1199)
Q Consensus 252 ~~~---~~~~~-~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~ 303 (1199)
... ..... ... -+. ..-+.++++|.++......-..+...+..
T Consensus 92 ~~~~~~~~~~~~~~g------pl~---~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 92 AALLLEPGEFRFVPG------PLF---AAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhhccCCeEEEecC------Ccc---cccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 211 00000 000 000 01115899999988776555666666643
No 292
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.04 Score=61.72 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=48.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC--ChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY--DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..++.++|+.|+||||++.+++.....+.....+..|+. ..+ ...+-++...+.++.......+...+...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 458999999999999999999873221211234455543 333 23344444455555443333333334444433 44
Q ss_pred CCeEEEEEecCC
Q 000983 276 GQRFLLVLDDVW 287 (1199)
Q Consensus 276 ~k~~LlVlDdvw 287 (1199)
++ -+|++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 55 456688874
No 293
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.46 E-value=0.026 Score=61.76 Aligned_cols=85 Identities=19% Similarity=0.076 Sum_probs=53.0
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCC-----CCCCcHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME-----QSTSSISLLETRL 270 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l~~~l 270 (1199)
..-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .++.++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 44678999999999999999998762 33344567899887766643 223332211 1122344444445
Q ss_pred HHHhC-CCeEEEEEecCC
Q 000983 271 LEFLT-GQRFLLVLDDVW 287 (1199)
Q Consensus 271 ~~~l~-~k~~LlVlDdvw 287 (1199)
...++ +.--+||+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 345689999873
No 294
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.46 E-value=0.18 Score=55.19 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHH
Q 000983 177 DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRI 245 (1199)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 245 (1199)
......++.++... +-|.|.|.+|+||||+|++++. +....| +-|.++...+..++
T Consensus 51 ~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 51 KATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRIDL 106 (327)
T ss_pred HHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhhc
Confidence 34455677777543 2588999999999999999997 343332 34555555444333
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.059 Score=62.32 Aligned_cols=88 Identities=19% Similarity=0.103 Sum_probs=46.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
...+|+|+|.+|+||||++.+++.....+.....+..++.. .+.. .+.++...+.++.......+...+...+.+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-L 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-h
Confidence 35799999999999999999888632112112334444432 2222 222222223333222223334445554543 3
Q ss_pred CCCeEEEEEecCC
Q 000983 275 TGQRFLLVLDDVW 287 (1199)
Q Consensus 275 ~~k~~LlVlDdvw 287 (1199)
.+ .=+||+|..-
T Consensus 427 ~~-~DLVLIDTaG 438 (559)
T PRK12727 427 RD-YKLVLIDTAG 438 (559)
T ss_pred cc-CCEEEecCCC
Confidence 33 4477788774
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.39 E-value=0.06 Score=53.54 Aligned_cols=117 Identities=18% Similarity=0.078 Sum_probs=61.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC--CChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
-.+++|+|..|.|||||.+.++-. .......+++.-..- .+..+..+ ..++.... -..-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHh
Confidence 348999999999999999999863 223344444422111 11111111 11111000 1111122233455566
Q ss_pred CCeEEEEEecCCC-cCccChHHHHHhhhCC-CCCcEEEEecCCchhhh
Q 000983 276 GQRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 276 ~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (1199)
.++-++++|+--. .|....+.+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7778899998732 2223344555555432 24667888888765443
No 297
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.39 E-value=0.073 Score=61.11 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.+..++.++|.+|+||||+|..++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34689999999999999999888863
No 298
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.38 E-value=0.17 Score=49.86 Aligned_cols=117 Identities=18% Similarity=0.100 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC---CChHHHHHHHH---HhcccC----CCC-CCc---HH
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD---YDLPRILKGMI---EFHSKM----EQS-TSS---IS 264 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~---~~~~~~----~~~-~~~---~~ 264 (1199)
..|-|++..|.||||.|..++- +...+=-.++.|.+-+. ......+.... .+.+.. ... ..+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 4677888899999999987775 33322223333333322 23333333320 000100 000 011 11
Q ss_pred HHHHHHHHHhCCCeE-EEEEecCCC---cCccChHHHHHhhhCCCCCcEEEEecCCc
Q 000983 265 LLETRLLEFLTGQRF-LLVLDDVWN---EDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 265 ~l~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1199)
...+..++.+...+| |+|||.+-. ...-+.+.+...+.....+.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 222334445555555 999999831 12244577888887777788999999975
No 299
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.38 E-value=0.17 Score=50.54 Aligned_cols=116 Identities=19% Similarity=0.120 Sum_probs=59.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEE-------EecCCCCh--HHHHHHHHHhcccCCCCCCcHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWV-------CVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLET 268 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~ 268 (1199)
-.+++|+|..|.|||||++.++--... ....+++ .+.+.... ..+...+... ....-..-+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 448999999999999999999874221 1111111 12232211 1222222210 1111111122223
Q ss_pred HHHHHhCCCeEEEEEecCCC-cCccChHHHHHhhhCCCCCcEEEEecCCchhhh
Q 000983 269 RLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1199)
.+.+.+..++=++++|+--. .|....+.+...+... +..||++|.+.....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 34555666777888997632 1223334455555433 356888887766543
No 300
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.37 E-value=0.15 Score=58.79 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
....+|.++|.+|+||||+|..++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999999873
No 301
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.36 E-value=0.04 Score=68.59 Aligned_cols=175 Identities=16% Similarity=0.097 Sum_probs=80.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC-------CCcHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-------TSSISLLETRL 270 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~l~~~l 270 (1199)
..++.|+|+.|.||||+.+.+.-.. -.....++|.+...... .++..+...++..... ......+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~---l~aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA---LMFQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH---HHHHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 4689999999999999999887521 01112223332221000 0111111111110000 11122222222
Q ss_pred HHHhCCCeEEEEEecCCCc-CccChHHHH-HhhhC-CCCCcEEEEecCCchhhhhhcCCCceeCCCCChh-HHHHHHHHH
Q 000983 271 LEFLTGQRFLLVLDDVWNE-DYRKWEPLQ-QLLKQ-GHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPED-QCWSIFKKI 346 (1199)
Q Consensus 271 ~~~l~~k~~LlVlDdvw~~-~~~~~~~l~-~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~ 346 (1199)
. .+ .++-|+++|..-.. ++.+...+. ..+.. ...|+.+|+||....+.........+..-.+..+ +... |...
T Consensus 398 ~-~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Yk 474 (771)
T TIGR01069 398 S-KT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYK 474 (771)
T ss_pred H-hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEE
Confidence 2 22 57899999998542 222223332 12211 1357899999998877543322211111111111 1000 0000
Q ss_pred hcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhcc
Q 000983 347 AFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRK 389 (1199)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~ 389 (1199)
. ..+.+ + ...|-+|++++ |+|-.+.--|..+..
T Consensus 475 l-~~G~~-------g-~S~a~~iA~~~-Glp~~ii~~A~~~~~ 507 (771)
T TIGR01069 475 L-LKGIP-------G-ESYAFEIAQRY-GIPHFIIEQAKTFYG 507 (771)
T ss_pred E-CCCCC-------C-CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 0 11110 0 23566788777 888888888877654
No 302
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.35 E-value=0.00094 Score=66.22 Aligned_cols=86 Identities=24% Similarity=0.216 Sum_probs=68.7
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhcccccccee
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 666 (1199)
+..++..++||++.|.+..+-..|+.+..|..|+++.|.|..+|+.++.+..+..+++..|. ....|.++++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 44567788888888887777777888888888888888888888888888888888877665 67788888888888888
Q ss_pred ecccccc
Q 000983 667 ELEEMFW 673 (1199)
Q Consensus 667 ~l~~n~~ 673 (1199)
++.++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 8877643
No 303
>PRK14974 cell division protein FtsY; Provisional
Probab=95.34 E-value=0.11 Score=57.72 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=46.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHhcccCCCC---CCcHHH-HHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQS---TSSISL-LETRL 270 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~---~~~~~~-l~~~l 270 (1199)
+..+|.++|++|+||||++.+++.... ...+ .++.+. ...+.. .+-++...+.++..... ..+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888886321 1223 233333 233332 22344455555432211 122222 22333
Q ss_pred HHHhCCCeEEEEEecCCC
Q 000983 271 LEFLTGQRFLLVLDDVWN 288 (1199)
Q Consensus 271 ~~~l~~k~~LlVlDdvw~ 288 (1199)
...-....=+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 322222223888898854
No 304
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.2 Score=58.39 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=82.2
Q ss_pred CCccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
-+++=|.++-+.++.+...-.-. -.-...+-|..+|+||.|||++|+++++ .....| +.+..
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkg---- 501 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKG---- 501 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccC----
Confidence 34555677666666544332110 0124566788999999999999999999 334444 22221
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-----------cChHHHHHhhhCCCCCcEEE
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQGHKGSRVL 311 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~~~gs~ii 311 (1199)
.+++... ..++...+.+.+++.-+--..+|.||.++.... ....++..-+........|+
T Consensus 502 pEL~sk~---------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 502 PELFSKY---------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred HHHHHHh---------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 1111111 122333344444444345568889998853111 11222223333222222333
Q ss_pred E--ecCCchhhh--hhc---CCCceeCCCCChhHHHHHHHHHhcCC
Q 000983 312 V--TSRTARVSQ--IMG---IRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1199)
Q Consensus 312 v--TtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1199)
| .|-.++..+ .+. .+..+.+..-+.+.-.++|+.++-..
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 3 333233221 122 34566676667777778999888544
No 305
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.31 E-value=0.54 Score=52.82 Aligned_cols=214 Identities=13% Similarity=0.125 Sum_probs=119.6
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHH-HHHhcccccccccceeEEEEecCCC---ChHHHHHHHHH
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERVREHFESRMWVCVTVDY---DLPRILKGMIE 251 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~~---~~~~~~~~i~~ 251 (1199)
|.+..++|..||.... -..|.|.|+-|.||+.|+ .++..+.+- +..+.+.+-. +-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999998764 458889999999999999 777664222 3333333211 12223333333
Q ss_pred hcc-----------------------cCCCC-CCcHH-HHHH-------HHHH-------------------Hh---CCC
Q 000983 252 FHS-----------------------KMEQS-TSSIS-LLET-------RLLE-------------------FL---TGQ 277 (1199)
Q Consensus 252 ~~~-----------------------~~~~~-~~~~~-~l~~-------~l~~-------------------~l---~~k 277 (1199)
+++ +.... ..+.+ ++.+ .|++ +| -.+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 322 11111 11111 1111 1111 01 123
Q ss_pred eEEEEEecCCCcCc---cChHHHHHhhh--CCCCCcEEEEecCCchhhh----hhc--CCCceeCCCCChhHHHHHHHHH
Q 000983 278 RFLLVLDDVWNEDY---RKWEPLQQLLK--QGHKGSRVLVTSRTARVSQ----IMG--IRSPYLLEYLPEDQCWSIFKKI 346 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~---~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~lf~~~ 346 (1199)
|=+||+|+.-.... .-|+.+..+-. ...+=..||++|-+..... .+. ....+.|...+.+.|..+...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 56899999853221 22344433221 1233456888887654443 332 2356789999999999999988
Q ss_pred hcCCCCCC---------cccc----chhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHH-HHHHHHh
Q 000983 347 AFNQGNFS---------SRMQ----QQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVN-KWRKILS 401 (1199)
Q Consensus 347 a~~~~~~~---------~~~~----~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~-~w~~~l~ 401 (1199)
........ .... ......-....++..||==.=+..+++.++...+++ .-.++.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 75432110 0000 012333445788899999999999999998776553 4444544
No 306
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.29 E-value=0.073 Score=58.69 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccc----cccceeEEEEecCCCChHHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVR----EHFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1199)
..-+++-|+|.+|+|||+||.+++-..... ..=..++||+....|+.+++.+ +++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 346799999999999999998876422221 1124678999998888887754 455544
No 307
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.042 Score=55.72 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=43.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcc--cCCCCCCcHHHHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHS--KMEQSTSSISLLETRLLEF 273 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~~ 273 (1199)
.++.+|+|.|.+|.||||+|+.++. .+...+ ++-++- ..|-...-.....+... -..+...+.+.+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4578999999999999999999997 333331 111111 11111100111111111 1122256677778888888
Q ss_pred hCCCe
Q 000983 274 LTGQR 278 (1199)
Q Consensus 274 l~~k~ 278 (1199)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 308
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.17 Score=58.12 Aligned_cols=156 Identities=19% Similarity=0.269 Sum_probs=87.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
..=|.+||++|.|||-||++|+| ..+..| ++|-. .+++..-. ..+...+...+.+.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKG----PELlNkYV---------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKG----PELLNKYV---------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecC----HHHHHHHh---------hhHHHHHHHHHHHhhcCC
Confidence 34567999999999999999999 444455 33322 12221111 222333444444444577
Q ss_pred eEEEEEecCCCc-----CccCh------HHHHHhhhC--CCCCcEEEEecCCchhhhhh-----cCCCceeCCCCChhHH
Q 000983 278 RFLLVLDDVWNE-----DYRKW------EPLQQLLKQ--GHKGSRVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQC 339 (1199)
Q Consensus 278 ~~LlVlDdvw~~-----~~~~~------~~l~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~ 339 (1199)
.+.|+||.++.. +...| .++..-+.. ...|--||-.|..+++.+.. .-+...-+..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999999531 11122 233333322 23566777777766654321 2234566777888999
Q ss_pred HHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 340 WSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 340 ~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
.++++...-....+. ...-+++++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl--~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPL--SSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCC--CcccCHHHHhhc--ccccCCc
Confidence 999988875422211 022345555542 3455554
No 309
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.22 Score=59.77 Aligned_cols=135 Identities=16% Similarity=0.100 Sum_probs=78.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
...+.+-++|++|.|||.||+++++ .....|-.+ ... .++. .........+.+.+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v-----~~~----~l~s---------k~vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISV-----KGS----ELLS---------KWVGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEe-----eCH----HHhc---------cccchHHHHHHHHHHHHHc
Confidence 3456888999999999999999998 344444332 111 1110 0112333444555555557
Q ss_pred CCeEEEEEecCCCc------Cc-----cChHHHHHhhhCCC--CCcEEEEecCCchhhhhh-----cCCCceeCCCCChh
Q 000983 276 GQRFLLVLDDVWNE------DY-----RKWEPLQQLLKQGH--KGSRVLVTSRTARVSQIM-----GIRSPYLLEYLPED 337 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~------~~-----~~~~~l~~~l~~~~--~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~ 337 (1199)
.....|++|+++.- +. ....++...+.... .+..||-||-.+...... .-+..+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 88999999999531 10 11223333333222 333345555544333211 22457788888999
Q ss_pred HHHHHHHHHhcCC
Q 000983 338 QCWSIFKKIAFNQ 350 (1199)
Q Consensus 338 ~~~~lf~~~a~~~ 350 (1199)
+..+.|+.+....
T Consensus 414 ~r~~i~~~~~~~~ 426 (494)
T COG0464 414 ERLEIFKIHLRDK 426 (494)
T ss_pred HHHHHHHHHhccc
Confidence 9999999988643
No 310
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.1 Score=64.16 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=71.8
Q ss_pred CccccchhhHHHHHHHHhCCCCCCC--CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEE--DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
..++|-++.+..|.+.+.....+-. .+...+.+.|+.|+|||-||++++. .+-+..+..+-|+.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 3566777777777777665432222 2566788999999999999999997 3333333333333222 111
Q ss_pred HHHhcccCCC--CCCcHHHHHHHHHHHhCCCeE-EEEEecCCCcCccChHHHHHhhhCC
Q 000983 249 MIEFHSKMEQ--STSSISLLETRLLEFLTGQRF-LLVLDDVWNEDYRKWEPLQQLLKQG 304 (1199)
Q Consensus 249 i~~~~~~~~~--~~~~~~~l~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (1199)
+.+.++.... .....+ .|.+.++.+.| +|+||||...+.+....+...+..+
T Consensus 633 vskligsp~gyvG~e~gg----~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGG----QLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCcccccchhHH----HHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2222222211 122233 44455566765 7778999888777777777777643
No 311
>PRK09354 recA recombinase A; Provisional
Probab=95.18 E-value=0.043 Score=60.66 Aligned_cols=85 Identities=18% Similarity=0.078 Sum_probs=53.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCC-----CCCCcHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME-----QSTSSISLLETRL 270 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l~~~l 270 (1199)
..-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .++.++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999988763 33334567899888777653 233333211 1122344444444
Q ss_pred HHHhC-CCeEEEEEecCC
Q 000983 271 LEFLT-GQRFLLVLDDVW 287 (1199)
Q Consensus 271 ~~~l~-~k~~LlVlDdvw 287 (1199)
...++ ++--+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 44443 445689999983
No 312
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0088 Score=36.30 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=18.8
Q ss_pred cccEEecCCCCCcccCcccccC
Q 000983 592 YLRLLDLSSSTLTVLPDSVEEL 613 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~~lp~~i~~l 613 (1199)
+|++|||++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999987754
No 313
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.12 E-value=0.059 Score=57.80 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=39.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFH 253 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1199)
..|.=|+|.+|+|||.||.+++-...+.. .=..++|++-...|+.+++. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 45899999999999999988875333222 12358899999989887775 455543
No 314
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.39 Score=48.64 Aligned_cols=192 Identities=15% Similarity=0.155 Sum_probs=97.2
Q ss_pred ccccc-hhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 172 NVFGR-DDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 172 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
++||. +..+.+|.+.+.-+-- -.-.+++-+.++|++|.|||-||++||++ ..+.|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 45654 5666666554432210 01234566789999999999999999973 34456777643
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC-----------ccChHHHHHhhh---C--CCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED-----------YRKWEPLQQLLK---Q--GHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l~---~--~~~g 307 (1199)
++.+..+.. ....+.+.+.-.-..-...|+.|.+++-. .+........+. . ..+.
T Consensus 216 elvqk~ige---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 216 ELVQKYIGE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHHhhh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 222222211 11111111111113557788899885421 111122222332 1 2466
Q ss_pred cEEEEecCCchhhhhh-----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 308 SRVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 308 s~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
-+||+.|..-++.+.. ..+..++..+-+++.-.++++-+.-...- . ..-++..+|.++....|.---++-+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-~---rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-T---RGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch-h---cccCHHHHHHhCCCCccchhhhhhh
Confidence 7888887755553321 22345677777777666777655432211 0 2234555555554433333344444
Q ss_pred HHHhh
Q 000983 383 IAGFL 387 (1199)
Q Consensus 383 ~~~~l 387 (1199)
-|++.
T Consensus 363 eagm~ 367 (404)
T KOG0728|consen 363 EAGMY 367 (404)
T ss_pred hhhHH
Confidence 44443
No 315
>PRK10867 signal recognition particle protein; Provisional
Probab=95.10 E-value=0.069 Score=61.30 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=21.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|.++|.+|+||||+|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998887776
No 316
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.10 E-value=0.12 Score=51.97 Aligned_cols=21 Identities=48% Similarity=0.650 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
++.++|++|+||||+++.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999987
No 317
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.09 E-value=0.13 Score=51.57 Aligned_cols=103 Identities=18% Similarity=0.098 Sum_probs=54.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEE------ecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC------VTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLL 271 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~ 271 (1199)
-.+++|+|..|.|||||++.+..-. ......+++. +.+... -..-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 3489999999999999999998632 1222223221 111111 011112222344
Q ss_pred HHhCCCeEEEEEecCCC-cCccChHHHHHhhhCC-CC-CcEEEEecCCchhhh
Q 000983 272 EFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HK-GSRVLVTSRTARVSQ 321 (1199)
Q Consensus 272 ~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~ 321 (1199)
..+..+.-++++|+--. .|....+.+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 55666778899998732 1222233444444321 12 256777777765544
No 318
>PRK07667 uridine kinase; Provisional
Probab=95.08 E-value=0.028 Score=57.67 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+.+.+.+.... ....+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666665544 4458999999999999999999987
No 319
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.07 E-value=0.062 Score=60.14 Aligned_cols=133 Identities=15% Similarity=0.129 Sum_probs=70.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
+.++|+...+.++.+.+..-. ..-.-|.|+|-.|+||+++|+.++.... -...| +.|.+... +...+...+
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pf---v~v~c~~~-~~~~~~~~l 77 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF---ISLNCAAL-NENLLDSEL 77 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCe---EEEeCCCC-CHHHHHHHH
Confidence 357899888888877775543 1223467999999999999999986211 11122 33444432 222222222
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1199)
......... ..... ....+. ....=.|+||||..........+...+..+. ...|||.||..
T Consensus 78 fg~~~~~~~-g~~~~-~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 78 FGHEAGAFT-GAQKR-HPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccccC-Ccccc-cCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 211100000 00000 001111 1222358899997766566677777775432 13588888764
No 320
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.04 E-value=0.087 Score=65.85 Aligned_cols=134 Identities=15% Similarity=0.174 Sum_probs=72.6
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
..++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++... +.. ...+.+.+..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~-~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSG-RNN-RRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcC-CCC-CCeEEEecccCC-hhHhhhhhc
Confidence 368999988888876665332 1223567999999999999999987421 111 122344444322 111112222
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1199)
........ ..... ....+. ....=.|+||||.....+....+...+..+. .+.|||.||..
T Consensus 449 g~~~~~~~-g~~~~-~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFT-GASAQ-RIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Cccccccc-ccccc-hhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111000 00000 011121 1223469999997766666677777775421 34589988864
No 321
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.03 E-value=0.086 Score=54.24 Aligned_cols=21 Identities=52% Similarity=0.646 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
||+|.|.+|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 322
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.98 E-value=0.04 Score=57.33 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=57.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCC-------CcHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQST-------SSISLLETRL 270 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~l~~~l 270 (1199)
.+++.|+|..|.||||+.+.+...... .+...|+.+.. .. .....++...+....... .....+...+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l---a~~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL---AHIGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH---HhCCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478899999999999999998742111 11112222111 00 001111222222111111 1111222211
Q ss_pred HHHhCCCeEEEEEecCCCcC-ccChHH----HHHhhhCC-CCCcEEEEecCCchhhhhh
Q 000983 271 LEFLTGQRFLLVLDDVWNED-YRKWEP----LQQLLKQG-HKGSRVLVTSRTARVSQIM 323 (1199)
Q Consensus 271 ~~~l~~k~~LlVlDdvw~~~-~~~~~~----l~~~l~~~-~~gs~iivTtR~~~v~~~~ 323 (1199)
.+..++.|+++|..-... ..+... +...+... ..+..+|+||.+.+++...
T Consensus 104 --~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 --RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred --HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 234678999999985432 112111 22223222 2345799999998877654
No 323
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.97 E-value=0.14 Score=54.60 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=52.7
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCC------------------
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME------------------ 257 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------------ 257 (1199)
..-.++.|+|.+|+|||++|.++.... .+ .=..++|++..+. ..++.+.+. +++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 446689999999999999999986521 22 2346778888654 344544432 221100
Q ss_pred --CCCCcHHHHHHHHHHHhCC-CeEEEEEecCC
Q 000983 258 --QSTSSISLLETRLLEFLTG-QRFLLVLDDVW 287 (1199)
Q Consensus 258 --~~~~~~~~l~~~l~~~l~~-k~~LlVlDdvw 287 (1199)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0012334555666666543 45589999874
No 324
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.97 E-value=0.12 Score=57.27 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=39.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFH 253 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1199)
....++.|+|.+|+||||||..++....... .-..++||+....++..++ .++++.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 4467999999999999999998875222211 1235789998887777764 3344443
No 325
>PRK05439 pantothenate kinase; Provisional
Probab=94.95 E-value=0.13 Score=56.14 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.2
Q ss_pred CCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 195 EDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.....+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999886
No 326
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.95 E-value=0.13 Score=57.20 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=41.7
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccc----cccceeEEEEecCCCChHHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVR----EHFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1199)
..-.++-|+|.+|+|||+|+.+++-..... +.-..++||+....|+..++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 346788999999999999999886422221 1124679999999999887754 455544
No 327
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.94 E-value=0.086 Score=57.03 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=47.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH--HHHHHHHHhcccCCC---CCCcH-HHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP--RILKGMIEFHSKMEQ---STSSI-SLLETR 269 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~~~~~~~---~~~~~-~~l~~~ 269 (1199)
.+.++|.++|++|+||||++..++.. ....-..+.+++.. .+... +-+....+..+.... ...+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 34689999999999999999999863 33332345555543 33332 222333344332211 11122 222333
Q ss_pred HHHHhCCCeEEEEEecCC
Q 000983 270 LLEFLTGQRFLLVLDDVW 287 (1199)
Q Consensus 270 l~~~l~~k~~LlVlDdvw 287 (1199)
+........=++|+|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444333444577888663
No 328
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.93 E-value=0.062 Score=55.38 Aligned_cols=119 Identities=15% Similarity=0.100 Sum_probs=61.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCc-------HHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSS-------ISLLETRL 270 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~l~~~l 270 (1199)
.+++.|.|..|.||||+.+.++-..- . .....+|.+.. .. -.+...|...++........ ..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~-l--a~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAI-M--AQIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-H--HHcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 46899999999999999998874211 1 11122222211 01 12222333333222111111 12222112
Q ss_pred HHHhCCCeEEEEEecCCCcC-ccC----hHHHHHhhhCCCCCcEEEEecCCchhhhhhcC
Q 000983 271 LEFLTGQRFLLVLDDVWNED-YRK----WEPLQQLLKQGHKGSRVLVTSRTARVSQIMGI 325 (1199)
Q Consensus 271 ~~~l~~k~~LlVlDdvw~~~-~~~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 325 (1199)
+ +..++-|+++|..-... ..+ ...+...+.. .|+.+|+||-+.+++..+..
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 1 23567899999984321 112 1222333332 37889999999888776543
No 329
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.93 E-value=0.0019 Score=77.92 Aligned_cols=181 Identities=24% Similarity=0.341 Sum_probs=105.6
Q ss_pred CCCCCcEEEccccccCCC---CCcccccccceeeecCC-CCCc-----cccCCCCCCCCCEEeecCCCCCCCCC--CC-C
Q 000983 946 IFAPQKLEISGCDLLSTL---PNSEFSQRLQLLALEGC-PDGT-----LVRAIPETSSLNFLILSKISNLDSFP--RW-P 1013 (1199)
Q Consensus 946 ~~~l~~L~l~~~~~~~~~---p~~~~~~~L~~L~l~~~-~~~~-----~~~~l~~l~sL~~L~L~~n~~l~~~~--~~-~ 1013 (1199)
++.++.|.+.+|...... +.....+.|+.|++++| .... .......+.+|+.|+++++...+..- .+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 345577778877655542 23345688999999873 2111 11234456888999999887533222 11 3
Q ss_pred CCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCC---CccCCcceEEec---cCCCCcccCCCCCC
Q 000983 1014 NLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDE---GLPTSLKCLIIA---SCSGLKSLGPRGTL 1087 (1199)
Q Consensus 1014 ~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~sL~~L~l~---~c~~L~~lp~~~~l 1087 (1199)
.+++|+.|.+.+|..++..........+++|++|+|++|..++.-... ...++|+.|.+. +|..++.+... .+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~-~~ 345 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS-GL 345 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH-Hh
Confidence 477899999888887655554456677888999999998876321100 001444444333 33445544221 11
Q ss_pred CCC--CCCCceeecCCCCCCCCCCCCCC-CCcC-eEEccCCcch
Q 000983 1088 KSL--NSLKDFYIEDCPLLQSFPEDGLP-ENLQ-HLVIQNCPLL 1127 (1199)
Q Consensus 1088 ~~l--~sL~~L~i~~c~~l~~lp~~~l~-~sL~-~L~i~~c~~L 1127 (1199)
... ..+..+.+.+|++++.+--.... .... .+.+.+||.|
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 122 26777888888887776433211 2222 5677788877
No 330
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.91 E-value=0.022 Score=52.21 Aligned_cols=28 Identities=39% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHhcccccccccce
Q 000983 201 IPIIGMPGLGKTTLAQLLFNEERVREHFES 230 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 230 (1199)
|-|+|.+|+||||+|++++. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 56899999999999999998 56667754
No 331
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.91 E-value=0.14 Score=62.07 Aligned_cols=133 Identities=14% Similarity=0.198 Sum_probs=72.1
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
...++|....+.++.+.+..-. ....-|.|+|..|+|||++|+.+++... ....| +.|.+..- + ...+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pf---v~i~c~~~-~-~~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPF---VKVNCAAL-S-ETLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeecCCC-C-HHHHHH
Confidence 4578999999888888775443 1223456999999999999999997321 11222 33444332 1 122222
Q ss_pred HHHhcccCCCC-CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000983 249 MIEFHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1199)
Q Consensus 249 i~~~~~~~~~~-~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1199)
.+ ++..... ..........+. ....-.|+||+|..........+...+..+. ...|||.||..
T Consensus 266 ~l--fg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 EL--FGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HH--cCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 11 1111000 000000000010 1233468899997766666677777775432 12588888754
No 332
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.17 Score=52.99 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=64.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccc-cc---cc-------c---ceeEEEEecCCCC------h----------------
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEER-VR---EH-------F---ESRMWVCVTVDYD------L---------------- 242 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~---~~-------F---~~~~wv~~~~~~~------~---------------- 242 (1199)
.+++|+|+.|.|||||.+.+.--.. .+ .. + ..+.||.=...++ +
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999987211 00 00 1 1344543211111 1
Q ss_pred ------HHHHHHHHHhcccCCCC-----CCcHHHHHH-HHHHHhCCCeEEEEEecCCC-cCccChHHHHHhhhC-CCCCc
Q 000983 243 ------PRILKGMIEFHSKMEQS-----TSSISLLET-RLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQ-GHKGS 308 (1199)
Q Consensus 243 ------~~~~~~i~~~~~~~~~~-----~~~~~~l~~-~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs 308 (1199)
.+...+.++.++...-. .-+-.+.|+ .|.+.|..+.=|+|||.--. .|...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 12333344444332111 222233333 45677888999999996421 111222333333332 12388
Q ss_pred EEEEecCCchhhh
Q 000983 309 RVLVTSRTARVSQ 321 (1199)
Q Consensus 309 ~iivTtR~~~v~~ 321 (1199)
.||++|-+-....
T Consensus 191 tIl~vtHDL~~v~ 203 (254)
T COG1121 191 TVLMVTHDLGLVM 203 (254)
T ss_pred EEEEEeCCcHHhH
Confidence 8999999865443
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.84 E-value=0.069 Score=60.13 Aligned_cols=22 Identities=50% Similarity=0.677 Sum_probs=20.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|+.|.|||||||.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999998864
No 334
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.83 E-value=0.12 Score=57.74 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=40.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccc----cceeEEEEecCCCChHHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREH----FESRMWVCVTVDYDLPRILKGMIEFH 253 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1199)
...++-|+|.+|+|||++|.+++........ =..++||+....++..++.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 4678999999999999999999864222111 14789999998888777654 33433
No 335
>PTZ00301 uridine kinase; Provisional
Probab=94.81 E-value=0.031 Score=57.64 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|.|.+|.||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999999876
No 336
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.80 E-value=0.094 Score=55.55 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=23.0
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+..+|+|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 337
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.12 Score=51.90 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=60.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhccc--CCC---CC--------CcHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK--MEQ---ST--------SSIS 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~--~~~---~~--------~~~~ 264 (1199)
-.+++|+|..|.|||||++.++-.. ......+++.-....+.. ......+.. ... .. -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4489999999999999999998632 122333333111000000 000011100 000 00 1111
Q ss_pred HH-HHHHHHHhCCCeEEEEEecCCC-cCccChHHHHHhhhCC-CCCcEEEEecCCchhhh
Q 000983 265 LL-ETRLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 265 ~l-~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (1199)
+. .-.+...+..++=++++|+--. .|....+.+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 21 2235566677888999998732 2223334444444332 23677888888876554
No 338
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.74 E-value=0.14 Score=51.48 Aligned_cols=120 Identities=21% Similarity=0.190 Sum_probs=58.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC--CCChHHHHHHHHHhcccCCCC-C-------CcHH-HH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV--DYDLPRILKGMIEFHSKMEQS-T-------SSIS-LL 266 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~~~~~~~~-~-------~~~~-~l 266 (1199)
-.+++|+|..|.|||||.+.++--. ......+++.-.. ........+.+. .+...... . -+.. ..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 3489999999999999999998631 2222333321110 011111111110 00000000 0 1111 12
Q ss_pred HHHHHHHhCCCeEEEEEecCCC-cCccChHHHHHhhhCC-CCCcEEEEecCCchhhh
Q 000983 267 ETRLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 267 ~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (1199)
.-.+...+-.+.=++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2234455566777899998742 2222334444444321 24667888888776654
No 339
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.26 Score=54.68 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=53.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
...+++.|+|+.|+||||++..++... ...-..+.+|+..... ...+-++...+.++.......+...+...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 346799999999999999999998642 2222345566654322 1233444455555433322345566666554432
Q ss_pred C-CCeEEEEEecCCC
Q 000983 275 T-GQRFLLVLDDVWN 288 (1199)
Q Consensus 275 ~-~k~~LlVlDdvw~ 288 (1199)
. +..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3345778887743
No 340
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.70 E-value=0.21 Score=49.86 Aligned_cols=119 Identities=20% Similarity=0.112 Sum_probs=66.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC---ChHHHHHHH--HHhc--ccCC-----CCCCc---
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY---DLPRILKGM--IEFH--SKME-----QSTSS--- 262 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~---~~~~~~~~i--~~~~--~~~~-----~~~~~--- 262 (1199)
...|-|+|..|-||||.|..++- +...+=-.+..|.+-+.. .....++.+ +... +... ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 34788999999999999987775 333332234444444332 333333321 0000 1000 00011
Q ss_pred HHHHHHHHHHHhCCCeE-EEEEecCCC---cCccChHHHHHhhhCCCCCcEEEEecCCch
Q 000983 263 ISLLETRLLEFLTGQRF-LLVLDDVWN---EDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1199)
Q Consensus 263 ~~~l~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1199)
.....+..++.+...+| |+|||.+-. ...-+.+++...+.....+.-||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11122334455545444 999999832 222456788888877777889999999753
No 341
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.68 E-value=0.18 Score=50.83 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..+|.|+|++|+||||+|+.++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 559999999999999999999973
No 342
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=1.4 Score=48.14 Aligned_cols=152 Identities=9% Similarity=0.050 Sum_probs=89.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhccc---c---cc--cccceeEEEEe-cCCCChHHHHHHHHHhcccCCCCCCcHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEE---R---VR--EHFESRMWVCV-TVDYDLPRILKGMIEFHSKMEQSTSSISLLE 267 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 267 (1199)
-.++.-++|..|.||+++|+.+.+.. . +. .|-+...++.. ..... .+++.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~---------------------vd~Ir 75 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLS---------------------KSEFL 75 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCC---------------------HHHHH
Confidence 35677799999999999999888732 0 01 11111222211 11111 22222
Q ss_pred HHHHHH----h-CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecC-Cchhhhh-hcCCCceeCCCCChhHHH
Q 000983 268 TRLLEF----L-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSR-TARVSQI-MGIRSPYLLEYLPEDQCW 340 (1199)
Q Consensus 268 ~~l~~~----l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~ 340 (1199)
+.+... . .+++=++|+||+...+......+...+.....++.+|++|. ...+... ......+++.++++++..
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 222111 0 24777889999976665567778888877777777776554 3444432 334568899999999888
Q ss_pred HHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 341 SIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 341 ~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
+.+... + . . ++.++.++...+|.--|+..
T Consensus 156 ~~l~~~--~--~-~--------~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 156 AKLLSK--N--K-E--------KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHc--C--C-C--------hhHHHHHHHHcCCHHHHHHH
Confidence 776653 1 1 1 24456666667763345554
No 343
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.64 E-value=0.14 Score=55.40 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.0
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987764
No 344
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.64 E-value=0.1 Score=54.60 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 345
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.071 Score=62.16 Aligned_cols=72 Identities=28% Similarity=0.217 Sum_probs=46.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC--ChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY--DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..-|.|.|..|+|||+||+++++... +.+.-.+.+|+++.-. ..+.+++. +...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHh
Confidence 34678999999999999999998533 4444445566665322 12222211 2233444566
Q ss_pred CCeEEEEEecCC
Q 000983 276 GQRFLLVLDDVW 287 (1199)
Q Consensus 276 ~k~~LlVlDdvw 287 (1199)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 788999999995
No 346
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.61 E-value=0.025 Score=53.74 Aligned_cols=21 Identities=52% Similarity=0.754 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHhcc
Q 000983 201 IPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (1199)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 347
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.59 E-value=0.19 Score=56.06 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=41.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1199)
....++-|.|.+|+|||++|..++-...... .-..++||+....|+.+++. +|++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 3467889999999999999988874322211 11368999999999887764 4555544
No 348
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.58 E-value=0.41 Score=51.52 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=64.1
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEE---ecCCCChHHHHHHHH--Hhc
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC---VTVDYDLPRILKGMI--EFH 253 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i~--~~~ 253 (1199)
..+.++..+... ....-++|+|..|.|||||.+.++.. +. .....+++. +.......++...+. .+.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhHHHHHHHhcccccc
Confidence 344555555532 23567899999999999999999973 22 222233331 111111122221110 000
Q ss_pred --ccCCCCCC---cHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhh
Q 000983 254 --SKMEQSTS---SISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 254 --~~~~~~~~---~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1199)
+......+ ....+...++ ...+=++|+|.+-. .+.+..+...+ ..|..||+||-+..+..
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~---~~~P~villDE~~~--~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIR---SMSPDVIVVDEIGR--EEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHHHHHHHHH---hCCCCEEEEeCCCc--HHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 00000001 1112222222 24677999999843 23344454444 35778999999766644
No 349
>PRK06547 hypothetical protein; Provisional
Probab=94.56 E-value=0.047 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.413 Sum_probs=23.0
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
....+|+|.|.+|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999873
No 350
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.56 E-value=0.33 Score=47.54 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCeEEEEEecCC-CcCc-cChHHHHHhhh-CCCCCcEEEEecCCchhhhhhc
Q 000983 266 LETRLLEFLTGQRFLLVLDDVW-NEDY-RKWEPLQQLLK-QGHKGSRVLVTSRTARVSQIMG 324 (1199)
Q Consensus 266 l~~~l~~~l~~k~~LlVlDdvw-~~~~-~~~~~l~~~l~-~~~~gs~iivTtR~~~v~~~~~ 324 (1199)
-.-.|.+.+-+++-+|+-|.=- +.|+ -.|+ +...|. -+..|+.|||+|-+..+...+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3345666777899999999542 1122 2343 444443 3568999999999998877653
No 351
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.51 E-value=0.027 Score=46.43 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 352
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.51 E-value=0.12 Score=57.76 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=65.8
Q ss_pred cccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHH-HH
Q 000983 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKG-MI 250 (1199)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~-i~ 250 (1199)
+||....+.++.+.+..-. ..-.-|.|+|..|+||+++|+.+++... ....| +-|.+... + ...+.. +.
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~-~-~~~l~~~lf 71 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAAL-S-ENLLDSELF 71 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCC-C-hHHHHHHHh
Confidence 3566666666666655433 1123467999999999999999986321 11222 23333322 1 222222 21
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1199)
......... .. ....-.+. ....-.|+||+|..........+...+..+. ...|||.||..
T Consensus 72 G~~~g~~~g-a~-~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 72 GHEAGAFTG-AQ-KRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred ccccccccC-cc-cccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 111000000 00 00000011 1233468999997666555666777665432 23488888753
No 353
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.15 Score=54.50 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=56.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHh-cccC---C-CCCCcHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF-HSKM---E-QSTSSISLLETRL 270 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-~~~~---~-~~~~~~~~l~~~l 270 (1199)
+.-+++=|+|+.|.||||+|.+++- ..+..-..++|++.-..++...+.. +... +..- . ........+.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 4577999999999999999999876 3444445889999999998876643 3333 2211 1 1112222333334
Q ss_pred HHHhCCCeEEEEEecC
Q 000983 271 LEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 271 ~~~l~~k~~LlVlDdv 286 (1199)
......+--|+|+|-|
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3433334568999988
No 354
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.48 E-value=0.18 Score=52.85 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=72.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC-----CCChHHHHHHHHHhcccCCCC------CCcHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV-----DYDLPRILKGMIEFHSKMEQS------TSSISLL 266 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~~~~~~~~------~~~~~~l 266 (1199)
-.+++|||-.|.||||+|+.+.. ..+--...+++.-.+ .....+-..++++.++..... .-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 44899999999999999999996 333333344443221 112233345555555533211 1222223
Q ss_pred HH-HHHHHhCCCeEEEEEecCCCc-CccChHHHHHhhhC--CCCCcEEEEecCCchhhhhhcC
Q 000983 267 ET-RLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQ--GHKGSRVLVTSRTARVSQIMGI 325 (1199)
Q Consensus 267 ~~-~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 325 (1199)
|+ .+.+.|.-+.-+||.|..-+. |...-.++...+.+ ...|-..+..|-+-.|+..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 32 356677889999999987332 22223445554432 2456678888888777766543
No 355
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.14 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||++.++-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999985
No 356
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.39 E-value=0.19 Score=61.76 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=82.1
Q ss_pred CccccchhhHHHHHHHHh---CCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLL---SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.++.|.+..++++.+.+. .... ....-.+-|.++|++|.|||++|+.++.. ....| +.++.. +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----H
Confidence 356677666655544432 2110 00111234889999999999999999873 32223 222211 1
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC----------ccChHHHH-Hhh---hC--CCCCc
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKWEPLQ-QLL---KQ--GHKGS 308 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~l~-~~l---~~--~~~gs 308 (1199)
+.. + . .......+...+.......+.+|++|+++... ...++... ..+ .. ...+.
T Consensus 221 ~~~-~---~-----~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FVE-M---F-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hHH-h---h-----hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 110 0 0 01122233344444444567899999995421 01122222 222 21 12344
Q ss_pred EEEEecCCchhhhhh-----cCCCceeCCCCChhHHHHHHHHHhcC
Q 000983 309 RVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1199)
Q Consensus 309 ~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1199)
-||.||...+..+.. ..+..+.+...+.++-.++++.+...
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 555677765543221 22456778888888888888877643
No 357
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.0078 Score=61.67 Aligned_cols=82 Identities=27% Similarity=0.284 Sum_probs=65.2
Q ss_pred HHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccch--hhcccCcccEEecCCCCcccccch-----hh
Q 000983 585 KIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN--SICNLYNLQTLKLIGCIWIMELPK-----DL 657 (1199)
Q Consensus 585 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~-----~i 657 (1199)
....+|+.|.||.|+-|.|+.+. .+..++.|+.|.|+.|.|..+-+ -+.+|++|++|-|..|.-.+.-+. .+
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 34678999999999999999884 48899999999999999987754 578999999999988765555443 23
Q ss_pred ccccccceee
Q 000983 658 ANLVKLRNLE 667 (1199)
Q Consensus 658 ~~L~~L~~L~ 667 (1199)
..|++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 4566666664
No 358
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.38 E-value=0.035 Score=58.03 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+..+|+|.|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999999997
No 359
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.35 E-value=0.23 Score=56.16 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=46.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC-----CCcHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLLETRLL 271 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~l~ 271 (1199)
.-.++.|.|.+|+|||||+.+++.. ....-..++||+.... ..++. .-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3569999999999999999999863 3333345677765432 33332 222333322111 233444444442
Q ss_pred HHhCCCeEEEEEecC
Q 000983 272 EFLTGQRFLLVLDDV 286 (1199)
Q Consensus 272 ~~l~~k~~LlVlDdv 286 (1199)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 234557888877
No 360
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.35 E-value=0.57 Score=47.12 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.|++|+|+.|.|||||.|.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 44999999999999999999976
No 361
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.33 E-value=0.12 Score=53.28 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=49.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHhcccCC------CCCCc-H-------
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKME------QSTSS-I------- 263 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~------~~~~~-~------- 263 (1199)
.-++|.|.+|+|||+|+..+.+... -+..+++-+.+.. .+.++.+++...-.... ...+. .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4678999999999999999988432 2334677776553 34555555543211110 00111 1
Q ss_pred --HHHHHHHHHHhCCCeEEEEEecC
Q 000983 264 --SLLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 264 --~~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
-.+.+.+++ ++|.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 122344444 799999999999
No 362
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.063 Score=53.76 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999984
No 363
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.19 Score=49.30 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..++.|.|+.|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 458889999999999999999984
No 364
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.29 E-value=0.16 Score=60.81 Aligned_cols=135 Identities=11% Similarity=0.121 Sum_probs=73.5
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
...++|....+.++.+.+..-. ..-.-|.|+|..|+|||++|+.+++...-. -...+.|.+..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh-HHHHHHh
Confidence 3568999998888888776543 223356799999999999999999732111 11223444443321 1111222
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1199)
.......... .... ..-.+.. .+. =.|+||+|..........+...+..+. ...|||.||..
T Consensus 259 fG~~~g~~~g-a~~~-~~g~~~~--a~g-GtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 259 FGHVKGAFTG-AISN-RSGKFEL--ADG-GTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred cCccccccCC-Cccc-CCcchhh--cCC-CEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 2111110000 0000 0001111 222 347899997766666677777775432 24589988864
No 365
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.067 Score=50.67 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=32.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccC
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKM 256 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 256 (1199)
+|.|-|.+|.||||+|+.++++.... ..+...++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------------~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------------LVSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------------eeeccHHHHHHHHHcCCC
Confidence 68999999999999999999842221 123456788888877643
No 366
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.24 E-value=0.25 Score=52.96 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHH--HHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRI--LKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..+++++|.+|+||||+++.+... ....=..+.+++.. .+....+ ++...+.++.......+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecC-CCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 468999999999999999988763 22211234455543 2222222 222222232221122344555554433212
Q ss_pred -CCeEEEEEecCCCc--CccChHHHHHhhh
Q 000983 276 -GQRFLLVLDDVWNE--DYRKWEPLQQLLK 302 (1199)
Q Consensus 276 -~k~~LlVlDdvw~~--~~~~~~~l~~~l~ 302 (1199)
.+.=++++|..-.. +....+.+...+.
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 23457888887543 1223444444443
No 367
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.23 E-value=0.36 Score=52.80 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=35.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHh
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1199)
-.++.|.|.+|+||||++.+++.... ..+=..++|+++.. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 44888999999999999999876321 22124567887655 345555555443
No 368
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.19 E-value=0.065 Score=57.96 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+++.+.... +-+.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhc
Confidence 44556665443 3557999999999999999876
No 369
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.31 Score=49.45 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHHHHhCCCeEEEEEecCCCc-CccChHHHHHhhhC-CCCCcEEEEecCCchhhhhhcCCCcee
Q 000983 268 TRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQ-GHKGSRVLVTSRTARVSQIMGIRSPYL 330 (1199)
Q Consensus 268 ~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~ 330 (1199)
..+.+.+-=++-+.|||..++- |.+..+.+...+.. ...|+-+||.|..++++.....+.+|-
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 3455555566779999988642 22333434333322 245777888888888888776555443
No 370
>PRK05973 replicative DNA helicase; Provisional
Probab=94.13 E-value=0.54 Score=49.27 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=71.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCC-----------CCCCcHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME-----------QSTSSISLL 266 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~l 266 (1199)
-.++.|.|.+|+|||++|.++..... + .=..+++++.... ..++...+... +... .+....+.+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R~~s~-g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDRLRAL-GADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHHHHHc-CCChHHhccceEeecCCCCCHHHH
Confidence 45888999999999999998876322 2 2235666666544 44454444321 1110 011223333
Q ss_pred HHHHHHHhCCCeEEEEEecCCCc----CccChHHHHHhhhC--CCCCcEEEEecCCchhhhh-hcCCCc-eeCCCCChhH
Q 000983 267 ETRLLEFLTGQRFLLVLDDVWNE----DYRKWEPLQQLLKQ--GHKGSRVLVTSRTARVSQI-MGIRSP-YLLEYLPEDQ 338 (1199)
Q Consensus 267 ~~~l~~~l~~k~~LlVlDdvw~~----~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~-~~~~~~-~~l~~L~~~~ 338 (1199)
...+.+ +.+.-++|+|-+-.. +..........+.. ...|.-||+|+....-.+. ...... -.|. ++..-
T Consensus 139 i~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR-~~~~~ 215 (237)
T PRK05973 139 IARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDVR-LPNPL 215 (237)
T ss_pred HHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhcC-CCChh
Confidence 344433 123458999987321 11112221111211 2467788888765332221 111111 1122 23344
Q ss_pred HHHHHHHHhcCC
Q 000983 339 CWSIFKKIAFNQ 350 (1199)
Q Consensus 339 ~~~lf~~~a~~~ 350 (1199)
-..||.+..|-.
T Consensus 216 d~~~f~~~~~~~ 227 (237)
T PRK05973 216 DLSLFDKACFLN 227 (237)
T ss_pred hHHHhhhhheec
Confidence 467888777643
No 371
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.13 E-value=0.28 Score=51.81 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=30.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
..++.|.|.+|+||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4589999999999999986665421 1222 3456666333 445555555
No 372
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.12 E-value=0.21 Score=53.63 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=46.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccC-----CC--CCCcHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKM-----EQ--STSSISLLET 268 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~-----~~--~~~~~~~l~~ 268 (1199)
.+..+|.|+|.+|.|||||+..+.+ ........ +.+ .....+..+ . +.+...+.. .. -..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~-~VI-~gD~~t~~D-a-~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPC-AVI-EGDQQTVND-A-ARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCE-EEE-CCCcCcHHH-H-HHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4588999999999999999999987 33333322 222 221122211 1 122322211 10 0223444555
Q ss_pred HHHHHhCCCeEEEEEecCC
Q 000983 269 RLLEFLTGQRFLLVLDDVW 287 (1199)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw 287 (1199)
.+...-...-=++|+++|-
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 5555444444677889984
No 373
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.10 E-value=0.043 Score=57.11 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.5
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+...+|+|+|.+|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 374
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.2 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+..++|||++|.|||-+|++|+.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa 188 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAA 188 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHH
Confidence 3467899999999999999999997
No 375
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.03 E-value=0.054 Score=56.78 Aligned_cols=20 Identities=45% Similarity=0.833 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 000983 201 IPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~ 220 (1199)
|.|.|++|+||||+|+.++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 376
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.03 E-value=0.21 Score=59.04 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=42.4
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEE
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC 235 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (1199)
+++--.+-++++..||.... .+....+++.+.|++|+||||.++.+++. -.|+.+-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~-~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMF-SGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHh-ccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 34445667788888887543 12334669999999999999999999973 2356666764
No 377
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.01 E-value=0.26 Score=55.07 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=40.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFH 253 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1199)
...++-|+|.+|+||||+|.+++....... .=..++||+....|+..++. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 467899999999999999999976432211 11278999998888877654 344443
No 378
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.01 E-value=1.3 Score=47.05 Aligned_cols=134 Identities=19% Similarity=0.239 Sum_probs=83.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
.+.+.|+|+.|+|||+-++.+++. .+....+..+..+....+...+........ ..........+...+++.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccC
Confidence 448889999999999999999873 233344566667776666666655544332 233444555666667888
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhhhhcCCCceeCCCCChhHHHHHHHHHhcCCC
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQG 351 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 351 (1199)
.-+|+.|.........++.+.......+-|- ++|-+ ......-.=+..+...+|.+..++..
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~-vLvG~-----------prL~~~l~~~~~~~~rl~srv~v~~~ 227 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKTGIGV-VLVGM-----------PRLFKVLRRPEDELSRLYSRVRVGKL 227 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhhCceE-EEecC-----------hHHHhccccchHHHHHHHHHhhhHhh
Confidence 9999999997766677777777665433332 22111 11111111245667778887777543
No 379
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.98 E-value=0.072 Score=55.32 Aligned_cols=66 Identities=29% Similarity=0.344 Sum_probs=38.9
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
+..++++.+.... .+..+|+|.|.||+|||||..++....+.+++=-.++=|.-|..++--.++-+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 4556666666543 45789999999999999999988874333333334445556666765555544
No 380
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.97 E-value=0.27 Score=56.06 Aligned_cols=51 Identities=29% Similarity=0.316 Sum_probs=35.1
Q ss_pred CCccccchhhHHHHHHHHh-------C--CCCC-C--CCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 170 TANVFGRDDDKERILHMLL-------S--DEFD-E--EDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~-------~--~~~~-~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...++|.++.++.+...+. . .... . ......|.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3457899988888865551 1 0100 0 01134788999999999999999986
No 381
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.96 E-value=0.31 Score=51.96 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=34.7
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
..-.++.|.|.+|+|||++|.++... .. ..-..++||+... +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 34679999999999999999887652 12 2345678888765 445555543
No 382
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.94 E-value=0.19 Score=48.93 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 383
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.91 E-value=0.24 Score=56.57 Aligned_cols=86 Identities=23% Similarity=0.269 Sum_probs=43.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..+++++|..|+||||++..++.........+.+.++.. ..+.. .+-+....+.++.......+...+...+. .++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~-d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT-DSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-CCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 469999999999999999988763211222233344433 22322 22233344444433333333334433333 244
Q ss_pred CCeEEEEEecC
Q 000983 276 GQRFLLVLDDV 286 (1199)
Q Consensus 276 ~k~~LlVlDdv 286 (1199)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 44 34555655
No 384
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.86 E-value=0.069 Score=51.61 Aligned_cols=35 Identities=37% Similarity=0.413 Sum_probs=25.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEE
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWV 234 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 234 (1199)
..||-|.|.+|.||||||+++.+ +....-..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 45899999999999999999998 444433344444
No 385
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.84 E-value=0.15 Score=53.46 Aligned_cols=114 Identities=21% Similarity=0.262 Sum_probs=65.4
Q ss_pred CccccchhhHHHHHHHHhCCCC-CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc-ccee-EEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-FESR-MWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~-~wv~~~~~~~~~~~~~ 247 (1199)
..++|..-.++.|+..+...-. +...++-|++.+|..|+||.-.|+.++++..-.+. =+.+ .+| ....|
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fv-at~hF------- 153 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFV-ATLHF------- 153 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhh-hhccC-------
Confidence 4567877777777777654321 12456779999999999999999999875321110 0000 011 11111
Q ss_pred HHHHhcccCCCCCCcHH----HHHHHHHHHh-CCCeEEEEEecCCCcCccChHHHHHhhh
Q 000983 248 GMIEFHSKMEQSTSSIS----LLETRLLEFL-TGQRFLLVLDDVWNEDYRKWEPLQQLLK 302 (1199)
Q Consensus 248 ~i~~~~~~~~~~~~~~~----~l~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~ 302 (1199)
+....++ +++.+++..+ .-+|-|+|+|+|+.....-.+.+...+.
T Consensus 154 ----------P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 154 ----------PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred ----------CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1112222 2333333333 3679999999997665444555655554
No 386
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.045 Score=53.79 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+.|-+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999987
No 387
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.79 E-value=0.092 Score=53.01 Aligned_cols=21 Identities=52% Similarity=0.648 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 388
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.78 E-value=0.25 Score=52.59 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=53.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhccccc--ccccceeEEEEecCCC-ChHHHHHHHHHhcccCC-------CCCCc-----
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERV--REHFESRMWVCVTVDY-DLPRILKGMIEFHSKME-------QSTSS----- 262 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-------~~~~~----- 262 (1199)
-+-++|.|-.|+|||+|+..+.++... +.+-+.++++-+.+.. ...++..++.+.-.... .+...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 346799999999999999999875331 1234667888887665 34555555554311111 00111
Q ss_pred HHHHHHHHHHHh--C-CCeEEEEEecC
Q 000983 263 ISLLETRLLEFL--T-GQRFLLVLDDV 286 (1199)
Q Consensus 263 ~~~l~~~l~~~l--~-~k~~LlVlDdv 286 (1199)
.-.....+.+++ + ++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 111222344444 3 78999999999
No 389
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.78 E-value=0.22 Score=60.78 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=51.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC--hHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD--LPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
..||+++|+.|+||||++.+++...........+..++.. .+. ..+-++...+.++.......+...+.+.+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4699999999999999999998732212112244444433 333 3344555555555444334455666655543 44
Q ss_pred CCeEEEEEecCC
Q 000983 276 GQRFLLVLDDVW 287 (1199)
Q Consensus 276 ~k~~LlVlDdvw 287 (1199)
++. +|++|=.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 443 66777664
No 390
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.78 E-value=0.32 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+++|+|..|.|||||.+.++-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 391
>PRK06762 hypothetical protein; Provisional
Probab=93.73 E-value=0.051 Score=54.37 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|++|+||||+|+.+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 392
>PRK03839 putative kinase; Provisional
Probab=93.70 E-value=0.047 Score=55.48 Aligned_cols=22 Identities=50% Similarity=0.905 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999983
No 393
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.70 E-value=0.34 Score=50.15 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=36.1
Q ss_pred HHHHHhCCCeEEEEEecCCC-cCccChH-HHHHhhhCCCC--CcEEEEecCCchhhhhhcCCCceeC
Q 000983 269 RLLEFLTGQRFLLVLDDVWN-EDYRKWE-PLQQLLKQGHK--GSRVLVTSRTARVSQIMGIRSPYLL 331 (1199)
Q Consensus 269 ~l~~~l~~k~~LlVlDdvw~-~~~~~~~-~l~~~l~~~~~--gs~iivTtR~~~v~~~~~~~~~~~l 331 (1199)
.+...+..+.-++++|+.-. .+....+ .+...+..... |..||++|.+...... .+..+.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 34556677888999999843 2222334 45555543222 5678888888776543 3444444
No 394
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.69 E-value=0.75 Score=47.89 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHhCCCeEEEEEecCCC-cCccChHHHHHhhhCCCCCcEEEEecCCchhhhhhcCCCceeC
Q 000983 270 LLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1199)
Q Consensus 270 l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1199)
+...+-.+.=++++|+-.. .|....+.+...+.....|..||++|.+...+.. .+..+.+
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~--~d~v~~l 196 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDKILVM 196 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 4445556777889998743 2233345555555543346678888887665543 3444443
No 395
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.69 E-value=0.093 Score=49.25 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=21.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+|.+.|.-|+||||+++.+++.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999999984
No 396
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.68 E-value=0.26 Score=56.38 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=46.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhccc-----CCCCCC-cH--------
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK-----MEQSTS-SI-------- 263 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~-----~~~~~~-~~-------- 263 (1199)
-..++|+|..|+|||||++.+.... .....+++..-.+..++.++....+..... -..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4578999999999999999998632 222234444333344444444433332211 011111 11
Q ss_pred -HHHHHHHHHHhCCCeEEEEEecC
Q 000983 264 -SLLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 264 -~~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
-.+.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd--~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRD--RGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHH--cCCCEEEeccch
Confidence 112333433 589999999999
No 397
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.68 E-value=0.084 Score=55.54 Aligned_cols=66 Identities=33% Similarity=0.386 Sum_probs=46.5
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++..+.... .+..||+|.|.||+|||||.-++-...+-+++=-.++=|.-|..++--.++-+-+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 45566665443 5678999999999999999988887544445544556677777777666654443
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.68 E-value=0.096 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999875
No 399
>PRK00625 shikimate kinase; Provisional
Probab=93.67 E-value=0.046 Score=54.50 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|.++||+|+||||+|+.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.65 E-value=0.61 Score=48.12 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCeEEEEEecCC-CcCccChHHHHHhhhCC--CCCcEEEEecCCchhhhhhcCCCceeC
Q 000983 267 ETRLLEFLTGQRFLLVLDDVW-NEDYRKWEPLQQLLKQG--HKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1199)
Q Consensus 267 ~~~l~~~l~~k~~LlVlDdvw-~~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1199)
.-.+.+.|-..+-+|+.|+=- +.|...-+.+...+... ..|..||+.|-++.+|..+ +..+.+
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 345677778888899999642 12223345555555433 4577899999999999854 344444
No 401
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.65 E-value=0.13 Score=53.68 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHHhhhHHHHHHHH
Q 000983 13 IVEKAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEER-QLKVPQLKDWLGKLRNAAYDAEDILETFA 88 (1199)
Q Consensus 13 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~~yd~ed~ld~~~ 88 (1199)
-+..++.++-.+.......+.-++.+++-++.+++.+|.||+...+. ...-.....++.++-+.||++|.++|...
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 45667777766666666667779999999999999999999997543 44334588999999999999999999763
No 402
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.63 E-value=0.45 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999863
No 403
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.63 E-value=0.22 Score=54.42 Aligned_cols=85 Identities=18% Similarity=0.064 Sum_probs=48.9
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC-----CCcHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLLETRL 270 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~l 270 (1199)
+.-+++-|+|..|+||||||..+.. .....-..++||.....++.... +.++..... .+..++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 3456999999999999999998886 34444556789999888775432 233322111 22233333444
Q ss_pred HHHhC-CCeEEEEEecCC
Q 000983 271 LEFLT-GQRFLLVLDDVW 287 (1199)
Q Consensus 271 ~~~l~-~k~~LlVlDdvw 287 (1199)
.+.++ +.--++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 44444 334588999883
No 404
>PRK04040 adenylate kinase; Provisional
Probab=93.63 E-value=0.056 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 405
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.62 E-value=0.05 Score=54.34 Aligned_cols=24 Identities=58% Similarity=0.685 Sum_probs=21.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..+|+|-||-|+||||||+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 458999999999999999999984
No 406
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.59 E-value=0.29 Score=52.81 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=54.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
..+|.|.|..|.||||+++++.+ .+...-..++.+.-...+.... + .+........ ....+.++..|+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~----~-~q~~v~~~~~---~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPG----I-NQVQVNEKAG---LTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCC----c-eEEEeCCcCC---cCHHHHHHHHhccC
Confidence 34889999999999999998875 2222111222222111211111 0 1111111111 13456667777777
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchh
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV 319 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 319 (1199)
.=.|+++++.+. +....++.....|..++-|..-.++
T Consensus 150 PD~i~vgEiR~~-----e~a~~~~~aa~tGh~v~tTlHa~~~ 186 (264)
T cd01129 150 PDIIMVGEIRDA-----ETAEIAVQAALTGHLVLSTLHTNDA 186 (264)
T ss_pred CCEEEeccCCCH-----HHHHHHHHHHHcCCcEEEEeccCCH
Confidence 888999999543 2223233323344445555444433
No 407
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.55 E-value=0.18 Score=56.83 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=60.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
...|.|.|+.|.||||+.+.+.+ .+......+++. +.+... .........+. ......+.....+.++..|+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E--~~~~~~~~~i~-q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIE--YVHRNKRSLIN-QREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChh--hhccCccceEE-ccccCCCCcCHHHHHHHhhccC
Confidence 35899999999999999999886 344344444443 222211 11000000000 0001111223556677778888
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhh
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVS 320 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 320 (1199)
.=.|++|.+.+. +.+.. ++.....|..|+.|.-...+.
T Consensus 196 pd~i~vgEird~--~~~~~---~l~aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVEL---ALTAAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCCH--HHHHH---HHHHHHcCCcEEEEEcCCCHH
Confidence 889999999532 33333 233334566677776654444
No 408
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.13 Score=51.93 Aligned_cols=51 Identities=29% Similarity=0.264 Sum_probs=35.3
Q ss_pred CccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.++-|.+..++++.+...-.-. -+-+..+-|.++|++|.|||-||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3456777777777665532210 01234566779999999999999999994
No 409
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.53 E-value=0.51 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+..|+|+||+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999998876
No 410
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=1.7 Score=45.62 Aligned_cols=157 Identities=19% Similarity=0.280 Sum_probs=82.9
Q ss_pred CccccchhhHHHHHHHHhCC-CC-----CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSD-EF-----DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-~~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.++-|.+..++.+.+.+.-. .+ +.....+-|.++|++|.||+-||++|+.... . -|++||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----H
Confidence 45668888888877664321 10 1245578899999999999999999998432 2 34455532 1
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHh-CCCeEEEEEecCCC------cC-ccChHHHHHhh-----hCC--CCCcE
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWN------ED-YRKWEPLQQLL-----KQG--HKGSR 309 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdvw~------~~-~~~~~~l~~~l-----~~~--~~gs~ 309 (1199)
+...-+ + ..+.+...|.+.- ..|..+|++|.|+. ++ .+.-..+..-| ..+ ..|.-
T Consensus 202 LvSKWm---G-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 202 LVSKWM---G-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred HHHHHh---c-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 211111 1 1122333333322 47899999999953 11 11122222222 112 23444
Q ss_pred EEEecCCchhhhhh---cCCCceeCCCCChhHHHH-HHHHHhcC
Q 000983 310 VLVTSRTARVSQIM---GIRSPYLLEYLPEDQCWS-IFKKIAFN 349 (1199)
Q Consensus 310 iivTtR~~~v~~~~---~~~~~~~l~~L~~~~~~~-lf~~~a~~ 349 (1199)
|+=.|..+-+.+.. .....+-+ +|++..|+. +|+-+.+.
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~ 314 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGD 314 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCC
Confidence 55567666554332 11122222 566666664 66666543
No 411
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.49 E-value=0.22 Score=53.53 Aligned_cols=20 Identities=40% Similarity=0.785 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 000983 201 IPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~ 220 (1199)
|.++|++|+||||+|+++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 412
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.43 E-value=0.06 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+..+|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 413
>PTZ00035 Rad51 protein; Provisional
Probab=93.42 E-value=0.54 Score=52.63 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=38.9
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccc----cccceeEEEEecCCCChHHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVR----EHFESRMWVCVTVDYDLPRILKGMIEFH 253 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1199)
..-.++.|+|.+|+|||||+..++-..... ..=..++||+....++.+++ .++++..
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 456799999999999999999887532211 11235679988877777664 3444443
No 414
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.41 E-value=0.062 Score=57.79 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=18.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999873
No 415
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.40 E-value=0.25 Score=57.33 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..|++++|+.|+||||++.+++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 469999999999999999999973
No 416
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.38 E-value=0.66 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|.|..|.|||||.+.++.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 417
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.074 Score=54.10 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=36.3
Q ss_pred cccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccc
Q 000983 173 VFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE 229 (1199)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 229 (1199)
+-|=.+.++++.+.....-. -.-+..+-|..+|++|.|||-+|++|+| +....|-
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfi 240 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFI 240 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEE
Confidence 44556677777665433210 0123456678999999999999999999 5555553
No 418
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.35 E-value=0.25 Score=55.02 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=49.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l 274 (1199)
+-+||++||+.||||||-..+++........=..++.|+.. .|.+ .+-++.-++-++.+.....+..++...+.. +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD-tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD-TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec-cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 37899999999999987654444321112222345566543 3333 333444455555554446666677666644 3
Q ss_pred CCCeEEEEEecCC
Q 000983 275 TGQRFLLVLDDVW 287 (1199)
Q Consensus 275 ~~k~~LlVlDdvw 287 (1199)
++.. +|.+|=+-
T Consensus 280 ~~~d-~ILVDTaG 291 (407)
T COG1419 280 RDCD-VILVDTAG 291 (407)
T ss_pred hcCC-EEEEeCCC
Confidence 4443 44556553
No 419
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.33 E-value=0.092 Score=57.33 Aligned_cols=51 Identities=25% Similarity=0.435 Sum_probs=44.5
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...|+|.++.++++++.+.....+.+..-+|+.++|+.|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999876644566788999999999999999999986
No 420
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.32 E-value=0.28 Score=48.47 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=59.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC--hHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCC
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD--LPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~ 276 (1199)
.+++|+|..|.|||||++.+.... ......+++....... ..... ..+.....-... +...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~qlS~G-~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYVPQLSGG-QRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEEeeCCHH-HHHHHHHHHHHhc
Confidence 589999999999999999998732 2234444443221111 11111 111110001111 1122234455556
Q ss_pred CeEEEEEecCCC-cCccChHHHHHhhhCC-CCCcEEEEecCCchhhhh
Q 000983 277 QRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQI 322 (1199)
Q Consensus 277 k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 322 (1199)
..-++++|+.-. .|......+...+... ..+..|+++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 678899998842 1222334444444321 125678888887666544
No 421
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.27 E-value=0.18 Score=57.29 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=48.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHhcccCC-------CCCCcH-----H
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEFHSKME-------QSTSSI-----S 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~-------~~~~~~-----~ 264 (1199)
-..++|+|..|+|||||++.++... ..+..+.+-+.+... +.++...++..-.... .+.... .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3478999999999999999998631 124555565655443 3445554433211110 001111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEecC
Q 000983 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l--~~k~~LlVlDdv 286 (1199)
.....+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122233333 689999999999
No 422
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.24 E-value=0.3 Score=52.72 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=29.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1199)
.-.++.|.|.+|+|||++|.+++... . ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecC
Confidence 45689999999999999999986531 1 2234667888764
No 423
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.15 E-value=0.067 Score=51.50 Aligned_cols=20 Identities=55% Similarity=0.914 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 000983 200 VIPIIGMPGLGKTTLAQLLF 219 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~ 219 (1199)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 424
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.14 E-value=0.1 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.190 Sum_probs=20.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHh
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLF 219 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~ 219 (1199)
-+++.|+|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999987
No 425
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.14 E-value=0.57 Score=49.73 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=29.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1199)
.-.++.|.|.+|+||||+|.++.... . ..-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccC
Confidence 45689999999999999999876521 2 2234677887643
No 426
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.13 E-value=0.2 Score=51.54 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.1
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhccc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEE 222 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 222 (1199)
....+|.++||+|.||||..+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 446688899999999999999998753
No 427
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.13 E-value=0.31 Score=58.44 Aligned_cols=134 Identities=12% Similarity=0.068 Sum_probs=69.0
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH-H
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG-M 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i 249 (1199)
+.++|....+.++++.+..-. .. -.-|.|+|-.|+||+++|++++... .+. -..-+.+.+..-. ...+.. +
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A---~~-~~pvlI~GE~GtGK~~lA~aiH~~s-~r~-~~pfv~inca~~~--~~~~e~el 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA---ML-DAPLLITGDTGTGKDLLAYACHLRS-PRG-KKPFLALNCASIP--DDVVESEL 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh---CC-CCCEEEECCCCccHHHHHHHHHHhC-CCC-CCCeEEeccccCC--HHHHHHHh
Confidence 468898887777776664322 11 2236799999999999999987631 111 1112344444332 222222 2
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecCCc
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRTA 317 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 317 (1199)
............ +...-.+. ....=.|+||+|+.........+...+..+. ...|||.||...
T Consensus 276 FG~~~~~~~~~~--~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYPNAL--EGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcCCcc--cCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 111110000000 00000011 1122357899998766556667777775431 134888887653
No 428
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.12 E-value=0.27 Score=56.20 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|.++|.+|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 429
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.10 E-value=0.76 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.+.-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 44899999999999999999986
No 430
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.10 E-value=0.36 Score=55.47 Aligned_cols=88 Identities=16% Similarity=0.224 Sum_probs=50.6
Q ss_pred cEEEEEEeCCCCcHHHHH-HHHhcccccc-----cccceeEEEEecCCCChHHHHHHHHHhcccCCCC-------CCc--
Q 000983 198 AFVIPIIGMPGLGKTTLA-QLLFNEERVR-----EHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-------TSS-- 262 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~-- 262 (1199)
-.-++|.|..|+|||+|| ..+.+...+. +.-+.++++.+.+..+.-.-+.+.++.-+..... .+.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 346789999999999997 6667643221 2335667888877654322233333332211110 111
Q ss_pred --------HHHHHHHHHHHhCCCeEEEEEecCC
Q 000983 263 --------ISLLETRLLEFLTGQRFLLVLDDVW 287 (1199)
Q Consensus 263 --------~~~l~~~l~~~l~~k~~LlVlDdvw 287 (1199)
.-.+.+.+++ +++..|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCch
Confidence 1122333433 5899999999993
No 431
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.09 E-value=0.25 Score=55.51 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhCC--------CCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSD--------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..++|.++.+..+...+... ........+-|.++|++|+|||++|+.++..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789988888887666542 0011122456789999999999999999973
No 432
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.07 E-value=0.2 Score=57.80 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=52.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHhcccCC-------CCCCc-----HH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKME-------QSTSS-----IS 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-------~~~~~-----~~ 264 (1199)
-.-++|.|.+|+|||||+.++.+.... .+-+.++++-+.+.. .+.++..++...-.... .+... ..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 447899999999999999888874322 245667777666543 34555555543211110 01111 11
Q ss_pred HHHHHHHHHh---CCCeEEEEEecC
Q 000983 265 LLETRLLEFL---TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l---~~k~~LlVlDdv 286 (1199)
.....+.+++ +++++|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223344554 389999999999
No 433
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.07 E-value=0.77 Score=48.37 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||++.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 34899999999999999999985
No 434
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.07 E-value=0.12 Score=62.36 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=54.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
++++|.+..++.+...+... +.+.++|.+|+||||+|+.+++.. ...+|+..+|..-+ ..+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 56889988888888777543 257899999999999999999732 22346777887663 335667777777
Q ss_pred Hhcc
Q 000983 251 EFHS 254 (1199)
Q Consensus 251 ~~~~ 254 (1199)
...+
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 6554
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.06 E-value=0.08 Score=66.18 Aligned_cols=186 Identities=16% Similarity=0.111 Sum_probs=86.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCC-------cHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTS-------SISLLETR 269 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~l~~~ 269 (1199)
+.+++.|+|+.+.||||+.+.+.-. .-......+|++..... -.++..|...++....... ....+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~---~~maq~G~~vpa~~~~~-i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLA---ALMAKSGLPIPANEPSE-IPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHH---HHHHHhCCCcccCCCcc-ccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 3568899999999999999988642 11122223333331100 0111111111111111111 11122222
Q ss_pred HHHHhCCCeEEEEEecCCCc-CccChHHHHH-hhhC-CCCCcEEEEecCCchhhhhhcCCCceeCCCCC-hhHHHHHHHH
Q 000983 270 LLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQ-LLKQ-GHKGSRVLVTSRTARVSQIMGIRSPYLLEYLP-EDQCWSIFKK 345 (1199)
Q Consensus 270 l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~-~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~-~~~~~~lf~~ 345 (1199)
+. .+ ..+-|+++|..-.. ++.+-..+.. .+.. ...|+.+|+||....++........+....+. +++... |.
T Consensus 402 l~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~-~~- 477 (782)
T PRK00409 402 LE-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFDEETLR-PT- 477 (782)
T ss_pred HH-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCc-EE-
Confidence 22 22 47789999998532 2222223322 1211 13478999999998876654332221110000 111110 00
Q ss_pred HhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHH
Q 000983 346 IAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKIL 400 (1199)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l 400 (1199)
+-+..+.+ -...|-+|++++ |+|-.+.--|..+... .......++
T Consensus 478 Ykl~~G~~--------g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li 522 (782)
T PRK00409 478 YRLLIGIP--------GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELI 522 (782)
T ss_pred EEEeeCCC--------CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHH
Confidence 00111111 123466788777 8888888888766543 223444443
No 436
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.01 E-value=0.13 Score=56.44 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=34.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
.+++.+.|.|||||||+|.+.+- ........+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988665 33333355666766666666555443
No 437
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.00 E-value=0.09 Score=50.07 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 67999999999999999988775
No 438
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.93 E-value=0.14 Score=46.95 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhCCCC-CCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-DEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..++|-.-..+.+++.+...-. ....+.-|++.+|.+|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4567777666666555543211 12456789999999999999998888774
No 439
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.92 E-value=0.32 Score=53.91 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+..+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999874
No 440
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.59 Score=47.95 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||++.++-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999985
No 441
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.85 E-value=0.35 Score=55.64 Aligned_cols=88 Identities=24% Similarity=0.258 Sum_probs=51.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHhcccCC-------CCCCcH-----H
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKME-------QSTSSI-----S 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-------~~~~~~-----~ 264 (1199)
-+-++|.|..|+|||||+.++....... +=+.++++-+.+.. .+.++..++...-.... .+.... .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4468999999999999999887632211 11345666665543 34555555554321110 011111 1
Q ss_pred HHHHHHHHHh---CCCeEEEEEecC
Q 000983 265 LLETRLLEFL---TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l---~~k~~LlVlDdv 286 (1199)
.....+.+++ +++++||++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 2233355555 679999999999
No 442
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.85 E-value=0.4 Score=54.88 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=48.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHhcccCCC------CCC-cHH-----
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKMEQ------STS-SIS----- 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~------~~~-~~~----- 264 (1199)
-..++|+|..|+|||||++.+++... .+..+++-+.+.. .+.+...+.+..-+.... ... ...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999997322 2344555555443 334444444332211100 011 111
Q ss_pred HHHHHHHHHh--CCCeEEEEEecC
Q 000983 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l--~~k~~LlVlDdv 286 (1199)
.....+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122233333 589999999999
No 443
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.84 E-value=0.067 Score=53.92 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 444
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.79 E-value=0.5 Score=46.96 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 000983 201 IPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~ 220 (1199)
|.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 445
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.69 E-value=0.07 Score=55.17 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 446
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.67 E-value=0.25 Score=57.30 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=50.2
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc-ccceeEEE-EecCCC-ChHHHHHHHHHhcccCCC
Q 000983 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-HFESRMWV-CVTVDY-DLPRILKGMIEFHSKMEQ 258 (1199)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv-~~~~~~-~~~~~~~~i~~~~~~~~~ 258 (1199)
+++++|..-. +-.-..|+|.+|+|||||++.+++. +.. +-++.++| -|.+.. .+.++.+.+-..+-....
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~ 477 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF 477 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECC
Confidence 3455554432 3446789999999999999999983 322 22333333 333332 222332222111111111
Q ss_pred CC-----CcHHHHHHHHHHHh--CCCeEEEEEecC
Q 000983 259 ST-----SSISLLETRLLEFL--TGQRFLLVLDDV 286 (1199)
Q Consensus 259 ~~-----~~~~~l~~~l~~~l--~~k~~LlVlDdv 286 (1199)
+. .....+.-.+.+++ .++.+||++|++
T Consensus 478 D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 478 DRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11 11112222233333 689999999999
No 447
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.67 E-value=0.071 Score=54.37 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 448
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.67 E-value=0.07 Score=29.93 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=4.6
Q ss_pred ccEEeccCCCcccc
Q 000983 616 LRYLDLSRTEIKVL 629 (1199)
Q Consensus 616 Lr~L~L~~~~i~~l 629 (1199)
|+.|+|++|+++.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444333
No 449
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.65 E-value=0.75 Score=60.85 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhccc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEE 222 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 222 (1199)
..+-|.++|++|.|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35577899999999999999999853
No 450
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.62 E-value=0.85 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+++|+|..|.|||||.+.+.-.
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 451
>PRK05922 type III secretion system ATPase; Validated
Probab=92.61 E-value=0.32 Score=55.58 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=46.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC-CChHHHHHHHHHhcccCCCC-----CC--cH-----H
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-YDLPRILKGMIEFHSKMEQS-----TS--SI-----S 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~-----~~--~~-----~ 264 (1199)
-..++|+|..|+|||||.+.+.... ..+..+.+.+... ....+.+.+........... .+ .. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4468999999999999999998732 1233333333332 23334444443322211100 11 11 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEecC
Q 000983 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l--~~k~~LlVlDdv 286 (1199)
.....+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122233443 589999999999
No 452
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.57 E-value=0.16 Score=48.61 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=27.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1199)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999842 224455555665555
No 453
>PRK08149 ATP synthase SpaL; Validated
Probab=92.56 E-value=0.43 Score=54.52 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=47.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC-CCChHHHHHHHHHhcccCC-------CCCCc-----HH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV-DYDLPRILKGMIEFHSKME-------QSTSS-----IS 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~-------~~~~~-----~~ 264 (1199)
-..++|+|..|+|||||++.++.... -+..+...+.. ..++.++..+......... .+... ..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 45789999999999999999987322 12333333332 2344555555544321110 01111 11
Q ss_pred HHHHHHHHHh--CCCeEEEEEecC
Q 000983 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l--~~k~~LlVlDdv 286 (1199)
.....+.+++ ++|++||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1222233333 589999999999
No 454
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.56 E-value=0.44 Score=49.91 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999999986
No 455
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.55 E-value=31 Score=42.90 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-..|+|+|..|.|||||||.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 456
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.28 Score=54.07 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=51.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC-----CCcHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLLETRLL 271 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~l~ 271 (1199)
.-.+|.|-|-+|+|||||.-+++.+ ....- .+.+|+-.+ +..++ +-.+++++..... ..+.+.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3569999999999999999999984 43333 556555443 33333 2234445432222 445565555554
Q ss_pred HHhCCCeEEEEEecC
Q 000983 272 EFLTGQRFLLVLDDV 286 (1199)
Q Consensus 272 ~~l~~k~~LlVlDdv 286 (1199)
+ .+.-++|+|-+
T Consensus 166 ~---~~p~lvVIDSI 177 (456)
T COG1066 166 Q---EKPDLVVIDSI 177 (456)
T ss_pred h---cCCCEEEEecc
Confidence 4 67889999988
No 457
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.55 E-value=0.27 Score=60.20 Aligned_cols=85 Identities=18% Similarity=0.062 Sum_probs=54.5
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC-----CCcHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLLETRL 270 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~l 270 (1199)
..-+++-|.|.+|+||||||.+++.. ....=..++||.....++.. .++.++..... ....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 44678899999999999999876652 22233567899888777632 45555433211 23334444555
Q ss_pred HHHhC-CCeEEEEEecCC
Q 000983 271 LEFLT-GQRFLLVLDDVW 287 (1199)
Q Consensus 271 ~~~l~-~k~~LlVlDdvw 287 (1199)
.+.++ ++--|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456689999983
No 458
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.53 E-value=0.28 Score=55.25 Aligned_cols=51 Identities=31% Similarity=0.424 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHhCC--------CCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSD--------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..++|.+..+..+..++... .........-|.++|++|+|||+||+.++..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999998888777531 1000112356889999999999999999873
No 459
>PRK13947 shikimate kinase; Provisional
Probab=92.53 E-value=0.084 Score=53.09 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999997
No 460
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.51 E-value=0.094 Score=52.99 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45889999999999999999997
No 461
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.50 E-value=0.16 Score=51.76 Aligned_cols=21 Identities=29% Similarity=0.142 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 462
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.49 E-value=0.29 Score=55.10 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=57.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhccccc----ccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERV----REHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLL 271 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~ 271 (1199)
...+=+.|||..|.|||.|.-..|+...+ +-||..- +.++.+.+-+.. .....+..+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~F----------m~~vh~~l~~~~----~~~~~l~~va~~-- 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEF----------MLDVHSRLHQLR----GQDDPLPQVADE-- 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHH----------HHHHHHHHHHHh----CCCccHHHHHHH--
Confidence 34677899999999999999999985433 2233210 122222222221 223334444333
Q ss_pred HHhCCCeEEEEEecCCCcCccChHHHHHhhhC-CCCCcEEEEecCCch
Q 000983 272 EFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSRTAR 318 (1199)
Q Consensus 272 ~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~ 318 (1199)
+.++..||.||.+.-.|..+---+...+.. ...|. |||+|-+..
T Consensus 124 --l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 124 --LAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRP 168 (362)
T ss_pred --HHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCC
Confidence 456667999999855444443333333332 23555 555555443
No 463
>PRK15453 phosphoribulokinase; Provisional
Probab=92.48 E-value=0.52 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+..+|+|.|.+|+||||+|+++..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999985
No 464
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.47 E-value=0.79 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.557 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+++|+|..|.|||||++.++--
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 465
>PHA02774 E1; Provisional
Probab=92.47 E-value=0.45 Score=55.66 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=27.4
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-...+..+|.. . .+...+.|+|++|.|||.+|..+.+
T Consensus 420 fl~~lk~~l~~-~----PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 420 FLTALKDFLKG-I----PKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHHhc-C----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 34455555532 2 3455889999999999999999997
No 466
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.45 E-value=0.15 Score=53.43 Aligned_cols=120 Identities=11% Similarity=0.085 Sum_probs=57.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcH---HHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSI---SLLETRLLEF 273 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~l~~~l~~~ 273 (1199)
+.+++.|+|..|.||||+.+.+.-- .-.+....+|.+... .-.....++..++.......+. ..-..++...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~---~~la~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI---VLMAQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH---HHHHHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 3569999999999999999987742 111111223322210 0011222222222211111111 1111122222
Q ss_pred h--CCCeEEEEEecCCCc----Cc--cChHHHHHhhhCCCCCcEEEEecCCchhhhhh
Q 000983 274 L--TGQRFLLVLDDVWNE----DY--RKWEPLQQLLKQGHKGSRVLVTSRTARVSQIM 323 (1199)
Q Consensus 274 l--~~k~~LlVlDdvw~~----~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 323 (1199)
+ ..++-|+++|..-.. |. ..|. +...+.. ..|+.+|+||-..++...+
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~ 159 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALA 159 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHh
Confidence 3 356889999998321 11 1122 1123322 3477899999877666544
No 467
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.45 E-value=2 Score=44.56 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+++|+|..|.|||||++.++.-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 448999999999999999999873
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.43 E-value=0.096 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999873
No 469
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.41 E-value=0.63 Score=54.42 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1199)
...+-++|..+- ..-.++.|.|.+|+|||||+.+++.. ....=..++||+...
T Consensus 80 i~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 444545553322 34669999999999999999998763 222223567776543
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.40 E-value=0.13 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999873
No 471
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.38 E-value=0.52 Score=55.07 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1199)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE 118 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc
Confidence 3569999999999999999999873 222223567777644
No 472
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.38 E-value=0.27 Score=59.67 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=48.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc-ccceeEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-HFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
++++|.++.++.+...+.... -+.++|++|+||||+|+.+++ .+.. .|...+++.-+ ..+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--------~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--------NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--------CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHH
Confidence 568899988887777775432 445999999999999999997 3333 33433433332 23445567777
Q ss_pred HHhccc
Q 000983 250 IEFHSK 255 (1199)
Q Consensus 250 ~~~~~~ 255 (1199)
...++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 765553
No 473
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.35 E-value=0.085 Score=51.48 Aligned_cols=21 Identities=48% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
||.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 474
>PRK06217 hypothetical protein; Validated
Probab=92.35 E-value=0.091 Score=53.45 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999974
No 475
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.32 E-value=0.8 Score=50.31 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=34.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGM 249 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 249 (1199)
-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4478999999999999999999842 23467777776554 345555554
No 476
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.30 E-value=0.5 Score=54.04 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=46.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC-CCChHHHHHHHHHhcccCC-------CCCCcHH-----
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV-DYDLPRILKGMIEFHSKME-------QSTSSIS----- 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~-------~~~~~~~----- 264 (1199)
-..++|.|..|+|||||++.+..... . +..+.+.+.. .-.+.++....+..-.... .+.....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999987322 1 2222232332 3334444444433221111 0011111
Q ss_pred HHHHHHHHHh--CCCeEEEEEecC
Q 000983 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l--~~k~~LlVlDdv 286 (1199)
.....+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122234444 588999999999
No 477
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.30 E-value=0.22 Score=47.22 Aligned_cols=102 Identities=18% Similarity=0.355 Sum_probs=44.1
Q ss_pred cccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCc-ccccCccccEEeccCCCccccch-hhc
Q 000983 557 VVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SIC 634 (1199)
Q Consensus 557 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~ 634 (1199)
.+.++++|+.+.+. +.+..+....|..+..|+.+.+.++ +..++. .|.++..|+++.+.+ .+..++. .|.
T Consensus 7 ~F~~~~~l~~i~~~------~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 7 AFYNCSNLESITFP------NTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp TTTT-TT--EEEET------ST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred HHhCCCCCCEEEEC------CCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35556666666554 1233344455666666777766653 554443 355565667776654 4444433 455
Q ss_pred ccCcccEEecCCCCcccccch-hhccccccceeecc
Q 000983 635 NLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELE 669 (1199)
Q Consensus 635 ~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~ 669 (1199)
.+++|+.+++..+ +..++. .+.+. +|+.+.+.
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 5666776666542 222322 33444 55555554
No 478
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.28 E-value=0.56 Score=51.70 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=47.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEec-CCCChHHHHHHHHHhcccCC-------CCCCc-------
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT-VDYDLPRILKGMIEFHSKME-------QSTSS------- 262 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~-------~~~~~------- 262 (1199)
-..++|+|..|.|||||.+.+..... -+..+..-+. +..++.++.......-.... .+...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999987322 1233334443 23344444444443321110 01111
Q ss_pred --HHHHHHHHHHHhCCCeEEEEEecC
Q 000983 263 --ISLLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 263 --~~~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
.-.+.+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccc
Confidence 1122333443 689999999998
No 479
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=1.5 Score=52.08 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCccccchhhHHH---HHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 170 TANVFGRDDDKER---ILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
-.++-|.++.+++ +++.|.++.. -...-++=+..+|++|.|||.||++++-...+- |- +.|..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--Ff-----~iSGS---- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--FF-----SISGS---- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--ce-----eccch----
Confidence 3466788766555 5566654431 012345677899999999999999999854443 21 11110
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC----------ccChHHHHHh-h---hCCC--CC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKWEPLQQL-L---KQGH--KG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~l~~~-l---~~~~--~g 307 (1199)
+..+.. ..-......+.+.+..+.-++.|++|.++... .+++++...- + ..++ .|
T Consensus 218 ----~FVemf-----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 218 ----DFVEMF-----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred ----hhhhhh-----cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 000100 01122334444555556668999999885311 1334333322 2 2223 23
Q ss_pred cEEEEecCCchhhhhh-----cCCCceeCCCCChhHHHHHHHHHhc
Q 000983 308 SRVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 308 s~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
--||..|-.++|.+.. .-+..+.++..+-..-.+.++-++-
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 3344445445554321 2233455555555566666665553
No 480
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.27 E-value=0.18 Score=52.18 Aligned_cols=22 Identities=23% Similarity=0.070 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5899999999999999999984
No 481
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.27 E-value=0.55 Score=48.26 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=26.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhccccccccc--------ceeEEEEecCC
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHF--------ESRMWVCVTVD 239 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~ 239 (1199)
++.|.|.+|+||||++.++.........| ..+.|+.....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 78899999999999999888743322222 24567766555
No 482
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.26 E-value=0.091 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4679999999999999999873
No 483
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.26 E-value=0.11 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 484
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.26 E-value=0.15 Score=51.88 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=28.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEe
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV 236 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 236 (1199)
.++|.|+|+.|+|||||++.+.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 46889999999999999999987 45566755444443
No 485
>PLN02924 thymidylate kinase
Probab=92.25 E-value=0.43 Score=49.83 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhccc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEE 222 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 222 (1199)
.....|+|-|..|+||||+|+.+++..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999843
No 486
>PRK13949 shikimate kinase; Provisional
Probab=92.24 E-value=0.098 Score=52.21 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-|.|+|++|+||||+|+.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999973
No 487
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.20 E-value=1.1 Score=50.28 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCC-CC--CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH--HHHHHHHHhcc
Q 000983 180 KERILHMLLSDE-FD--EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP--RILKGMIEFHS 254 (1199)
Q Consensus 180 ~~~l~~~L~~~~-~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~~~ 254 (1199)
.+++++.|.... .. ....+.||-.+|.-|.||||.|.++++ ..++ ....+-+.....+... +-++.+.++++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 466777776421 11 134578999999999999999999988 3443 3333333333343332 22455555544
Q ss_pred c
Q 000983 255 K 255 (1199)
Q Consensus 255 ~ 255 (1199)
.
T Consensus 156 v 156 (451)
T COG0541 156 V 156 (451)
T ss_pred C
Confidence 3
No 488
>PRK04328 hypothetical protein; Provisional
Probab=92.20 E-value=0.5 Score=50.69 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=30.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1199)
.-.++.|.|.+|+|||+||.++... .. ..-..++||+....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 4568999999999999999987653 22 22456788887663
No 489
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.36 Score=57.20 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=61.3
Q ss_pred CccccchhhHHHHHHHHhCCC-----CC-CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDE-----FD-EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~-----~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
+++=|.++-+.+|.+-+.-.- +. .-.+..=|.++|++|.|||-+|++|+.. ..- .|++|-.. +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--csL-----~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CSL-----NFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--cee-----eEEeecCH----H
Confidence 456688888888877654311 00 1233456779999999999999999973 222 24444322 2
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCC
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWN 288 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~ 288 (1199)
++..- + ..+.+.+.+.+.+.-.-+.+.|.||.+++
T Consensus 741 LLNMY---V------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMY---V------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHH---h------cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22111 1 23344555555555567899999999965
No 490
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.17 E-value=0.19 Score=51.03 Aligned_cols=41 Identities=34% Similarity=0.488 Sum_probs=26.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccc-cceeEEEEecCCCCh
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREH-FESRMWVCVTVDYDL 242 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~ 242 (1199)
.|+|.|-||+||||+|..++.. -...+ |+ +.-|....+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCCh
Confidence 5899999999999999885542 22222 33 344555555554
No 491
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.15 E-value=0.52 Score=58.58 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=69.3
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
+.++|....+.++.+....-. .... -|.|+|..|+||+++|+++++... -...| +.|.+..-. ...+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a---~~~~-pvli~Ge~GtGK~~~A~~ih~~s~r~~~pf---v~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA---KSSF-PVLLCGEEGVGKALLAQAIHNESERAAGPY---IAVNCQLYP-DEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh---CcCC-CEEEECCCCcCHHHHHHHHHHhCCccCCCe---EEEECCCCC-hHHHHHHh
Confidence 357888888777777665432 1223 367999999999999999987321 11222 233333322 22222333
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC---C--------CcEEEEecCC
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH---K--------GSRVLVTSRT 316 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~---~--------gs~iivTtR~ 316 (1199)
+......... ... -.+. ....=.|+||+|..........+...+..+. . ..|||.||..
T Consensus 397 fg~~~~~~~~-~~~----g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSEN-GRL----SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccC-CCC----Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 3221100000 000 0000 1123458999997766666677777775432 1 3477877664
No 492
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.11 E-value=1.1 Score=52.35 Aligned_cols=141 Identities=21% Similarity=0.292 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHH-HHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHhcc
Q 000983 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTT-LAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHS 254 (1199)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~ 254 (1199)
.-.++++..+.... ||.|+|-.|.|||| ||+.+|.+- |..--.|-+.+...+ ..+.+.+.+.++
T Consensus 359 ~~R~~ll~~ir~n~--------vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQ--------VVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred HHHHHHHHHHhhCc--------EEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 34566777775544 99999999999998 566666542 222223445554433 344566666654
Q ss_pred cCCCC--------------------CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhh---CCCCCcEEE
Q 000983 255 KMEQS--------------------TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLK---QGHKGSRVL 311 (1199)
Q Consensus 255 ~~~~~--------------------~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~ii 311 (1199)
..... ..+--.+.+.|.+..=+|=-.||+|...... -..+.+...+. .....-|+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEE
Confidence 32111 1112234444554444566689999996433 23344444443 234567999
Q ss_pred EecCCch---hhhhhcCCCceeCC
Q 000983 312 VTSRTAR---VSQIMGIRSPYLLE 332 (1199)
Q Consensus 312 vTtR~~~---v~~~~~~~~~~~l~ 332 (1199)
||+-..+ .+..++....+.++
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~Ip 528 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIP 528 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeec
Confidence 9987643 34455533333333
No 493
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.09 E-value=0.73 Score=48.68 Aligned_cols=48 Identities=29% Similarity=0.416 Sum_probs=32.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
...++.|.|.+|+|||++|.+++... .+ .=..++|++... +..++.+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~-~~-~g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQG-LK-NGEKAMYISLEE--REERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh-CCCeEEEEECCC--CHHHHHHH
Confidence 45689999999999999999887631 22 224566777655 34444433
No 494
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.09 E-value=1.5 Score=47.44 Aligned_cols=130 Identities=8% Similarity=-0.001 Sum_probs=72.0
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc-----------cccceeEEEEecCCCChHHHHHHH
Q 000983 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-----------EHFESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~F~~~~wv~~~~~~~~~~~~~~i 249 (1199)
+++...+..+. -..-..++|+.|+||+++|..++...--. ...+...|+. ....
T Consensus 7 ~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~-p~~~--------- 71 (290)
T PRK05917 7 EALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFS-PQGK--------- 71 (290)
T ss_pred HHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEe-cCCC---------
Confidence 45556665432 35677899999999999998887631100 0011111111 0000
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHh-----CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC-chhhhh-
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQI- 322 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~- 322 (1199)
...-.++++.+ +.+.+ .+++=++|+|+++..+.+.+..+...+.....++.+|++|.+ ..+...
T Consensus 72 --------~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 72 --------GRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred --------CCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 00012333221 22222 355668899999887778888898888776777776666655 444332
Q ss_pred hcCCCceeCCCC
Q 000983 323 MGIRSPYLLEYL 334 (1199)
Q Consensus 323 ~~~~~~~~l~~L 334 (1199)
......+.+.++
T Consensus 143 ~SRcq~~~~~~~ 154 (290)
T PRK05917 143 RSRSLSIHIPME 154 (290)
T ss_pred HhcceEEEccch
Confidence 222345555554
No 495
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.03 E-value=0.97 Score=47.70 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999997
No 496
>PRK15115 response regulator GlrR; Provisional
Probab=92.00 E-value=0.85 Score=54.10 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=65.8
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH-HH
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG-MI 250 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i~ 250 (1199)
.++|....+.++.+....-. .. -..|.|.|.+|+|||++|+.+++...-. ...|+.+.-..-....+.. +.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a---~~-~~~vli~Ge~GtGk~~lA~~ih~~s~r~----~~~f~~i~c~~~~~~~~~~~lf 206 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA---QS-DVSVLINGQSGTGKEILAQAIHNASPRA----SKPFIAINCGALPEQLLESELF 206 (444)
T ss_pred cccccCHHHHHHHHHHHhhc---cC-CCeEEEEcCCcchHHHHHHHHHHhcCCC----CCCeEEEeCCCCCHHHHHHHhc
Confidence 35676666666655443322 12 2346699999999999999998732111 1123333322112222222 21
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1199)
............ ...-+. -....-.|+||+|..........+...+..+. ...|||.||..
T Consensus 207 g~~~~~~~~~~~---~~~g~~--~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 207 GHARGAFTGAVS---NREGLF--QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred CCCcCCCCCCcc---CCCCcE--EECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC
Confidence 111100000000 000000 01223479999997766666677777775432 14588888874
No 497
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=0.014 Score=57.33 Aligned_cols=85 Identities=24% Similarity=0.365 Sum_probs=52.1
Q ss_pred cceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCC---CCccCCcceEEeccCCCCcccCCCCCCCCCCCCC
Q 000983 1018 LKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPD---EGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLK 1094 (1199)
Q Consensus 1018 L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~---~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~ 1094 (1199)
++.++-+++. +.... .+.+.++++++.|.+.+|..+....- .+..++|+.|+|++|+.+++-.. .++..+++|+
T Consensus 103 IeaVDAsds~-I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLR 179 (221)
T ss_pred EEEEecCCch-HHHHH-HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhH
Confidence 4555555544 22111 13566677777777777775543211 12347888888888888877543 3567778888
Q ss_pred ceeecCCCCCC
Q 000983 1095 DFYIEDCPLLQ 1105 (1199)
Q Consensus 1095 ~L~i~~c~~l~ 1105 (1199)
.|.+.+-+.+.
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 88887765433
No 498
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.00 E-value=0.34 Score=55.55 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=53.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHhcccCC-------CCCCc-----HH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEFHSKME-------QSTSS-----IS 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~-------~~~~~-----~~ 264 (1199)
-+-++|.|.+|+|||+|+.++.+... +.+-+.++++-+.+... +.++.+++...-.... .+... ..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 44689999999999999999887422 22346777887766553 4555555543211110 00111 11
Q ss_pred HHHHHHHHHh---CCCeEEEEEecC
Q 000983 265 LLETRLLEFL---TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l---~~k~~LlVlDdv 286 (1199)
.....+.+++ +++++|+++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 1223445555 468999999999
No 499
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.95 E-value=0.11 Score=48.33 Aligned_cols=22 Identities=45% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.-|.|.|-+|+||||+|.+++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHH
Confidence 3467999999999999999985
No 500
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.92 E-value=0.12 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999997
Done!