Query 000983
Match_columns 1199
No_of_seqs 708 out of 5619
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 04:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-48 6.3E-53 469.5 25.0 315 174-519 131-471 (549)
2 3rgz_A Protein brassinosteroid 100.0 7.5E-39 2.6E-43 404.6 23.5 553 538-1151 50-707 (768)
3 1vt4_I APAF-1 related killer D 100.0 9.5E-39 3.2E-43 383.1 17.8 285 173-513 130-437 (1221)
4 3rgz_A Protein brassinosteroid 100.0 8.2E-38 2.8E-42 395.1 23.2 499 587-1150 174-765 (768)
5 3sfz_A APAF-1, apoptotic pepti 100.0 5.5E-37 1.9E-41 414.0 22.9 314 169-519 122-452 (1249)
6 1ziw_A TOLL-like receptor 3; i 100.0 1E-35 3.6E-40 373.4 30.7 544 536-1126 23-621 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-34 4.5E-39 358.3 25.5 497 562-1126 32-557 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-32 4.6E-37 345.1 37.7 541 543-1126 9-596 (680)
9 1z6t_A APAF-1, apoptotic prote 100.0 1.5E-33 5.1E-38 346.3 25.1 308 170-516 123-449 (591)
10 3t6q_A CD180 antigen; protein- 100.0 2.1E-32 7.3E-37 338.5 33.7 498 563-1126 34-559 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-32 1.4E-36 336.0 29.5 470 591-1126 32-533 (606)
12 3t6q_A CD180 antigen; protein- 100.0 5.2E-32 1.8E-36 335.0 25.5 505 536-1102 31-558 (606)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-30 4.1E-35 333.2 35.9 505 536-1126 22-559 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 3.3E-31 1.1E-35 325.6 21.7 321 536-876 26-357 (570)
15 4ecn_A Leucine-rich repeat pro 100.0 8.3E-31 2.8E-35 326.7 24.0 102 1017-1126 729-839 (876)
16 4eco_A Uncharacterized protein 100.0 1.6E-30 5.4E-35 320.5 22.6 173 624-835 193-390 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-30 1.6E-34 313.6 25.7 202 591-833 26-234 (549)
18 2z63_A TOLL-like receptor 4, v 100.0 1.4E-29 4.7E-34 311.2 27.2 476 562-1126 28-530 (570)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-29 4.6E-34 307.0 26.3 426 591-1126 21-480 (520)
20 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-29 2.5E-33 316.7 34.0 482 537-1105 47-561 (844)
21 4ecn_A Leucine-rich repeat pro 100.0 4.2E-30 1.4E-34 320.3 20.3 62 771-835 569-632 (876)
22 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-29 6.6E-34 308.1 23.2 452 562-1102 26-508 (549)
23 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-28 1.3E-32 303.2 30.7 498 563-1126 53-579 (635)
24 4eco_A Uncharacterized protein 100.0 1.5E-29 5.2E-34 311.8 14.5 129 971-1105 489-633 (636)
25 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-28 9.4E-33 295.4 25.1 444 541-1102 3-479 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-27 9.8E-32 288.7 28.8 427 591-1126 52-509 (562)
27 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-27 1.6E-31 293.1 27.3 507 536-1102 50-578 (635)
28 1jl5_A Outer protein YOPM; leu 99.9 1.1E-26 3.9E-31 272.8 24.3 389 589-1125 9-427 (454)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-26 7.5E-31 280.9 26.3 442 540-1102 33-508 (562)
30 1o6v_A Internalin A; bacterial 99.9 7.4E-26 2.5E-30 269.1 27.0 131 967-1109 262-392 (466)
31 1o6v_A Internalin A; bacterial 99.9 4.3E-25 1.5E-29 262.5 25.1 100 590-697 45-144 (466)
32 3bz5_A Internalin-J, INLJ; leu 99.9 3.4E-25 1.2E-29 260.5 22.0 224 587-873 38-261 (457)
33 1jl5_A Outer protein YOPM; leu 99.9 1.3E-24 4.5E-29 255.2 26.3 180 607-856 5-184 (454)
34 3v47_A TOLL-like receptor 5B a 99.9 1E-24 3.5E-29 259.4 23.9 128 970-1102 275-406 (455)
35 3v47_A TOLL-like receptor 5B a 99.9 1.1E-23 3.7E-28 250.5 22.3 125 950-1077 278-407 (455)
36 4fmz_A Internalin; leucine ric 99.9 4E-23 1.4E-27 235.8 22.8 82 588-673 41-122 (347)
37 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-23 5.5E-28 246.2 18.7 355 558-1061 38-393 (457)
38 3o6n_A APL1; leucine-rich repe 99.9 1.7E-22 5.8E-27 234.4 22.3 105 589-696 43-150 (390)
39 3o6n_A APL1; leucine-rich repe 99.9 2.1E-22 7.1E-27 233.7 19.2 130 560-697 43-175 (390)
40 3oja_B Anopheles plasmodium-re 99.9 2.5E-22 8.4E-27 246.2 20.5 104 590-696 50-156 (597)
41 2id5_A Lingo-1, leucine rich r 99.9 8.4E-22 2.9E-26 235.5 21.9 83 969-1053 247-331 (477)
42 3oja_B Anopheles plasmodium-re 99.9 3.7E-22 1.3E-26 244.6 18.6 130 560-697 49-181 (597)
43 4fmz_A Internalin; leucine ric 99.9 5.2E-22 1.8E-26 226.6 16.8 125 558-696 40-164 (347)
44 2id5_A Lingo-1, leucine rich r 99.8 2.2E-20 7.4E-25 223.2 21.5 292 562-877 32-331 (477)
45 2ft3_A Biglycan; proteoglycan, 99.8 2.8E-19 9.5E-24 202.2 24.6 97 591-694 33-130 (332)
46 4fcg_A Uncharacterized protein 99.8 2E-20 7E-25 210.1 14.3 226 589-875 79-307 (328)
47 1xku_A Decorin; proteoglycan, 99.8 2.6E-19 9E-24 202.3 23.0 98 590-694 30-128 (330)
48 1ogq_A PGIP-2, polygalacturona 99.8 2.2E-20 7.6E-25 208.6 11.8 231 586-861 71-307 (313)
49 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-20 1.1E-24 207.4 6.9 105 591-697 50-159 (313)
50 3ogk_B Coronatine-insensitive 99.8 6.3E-21 2.2E-25 235.1 -1.5 232 582-853 103-350 (592)
51 3ogk_B Coronatine-insensitive 99.8 5E-21 1.7E-25 236.0 -3.5 113 583-695 65-200 (592)
52 3g06_A SSPH2 (leucine-rich rep 99.8 7.8E-18 2.7E-22 203.3 24.1 93 588-695 37-129 (622)
53 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-18 7.7E-23 194.7 17.9 282 539-876 34-330 (332)
54 1xku_A Decorin; proteoglycan, 99.8 1.4E-18 4.6E-23 196.4 15.9 281 540-875 33-328 (330)
55 4fcg_A Uncharacterized protein 99.8 7.8E-18 2.7E-22 189.0 16.8 229 774-1101 80-311 (328)
56 3g06_A SSPH2 (leucine-rich rep 99.7 2.5E-16 8.6E-21 190.2 26.5 134 948-1102 162-295 (622)
57 1z7x_W Ribonuclease inhibitor; 99.7 8.4E-20 2.9E-24 217.4 -7.1 152 539-695 4-178 (461)
58 2p1m_B Transport inhibitor res 99.7 3.6E-19 1.2E-23 219.5 -2.4 212 584-832 98-324 (594)
59 1z7x_W Ribonuclease inhibitor; 99.7 1.3E-20 4.6E-25 224.3 -14.9 108 562-674 3-126 (461)
60 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-18 1.5E-22 190.7 5.3 89 577-671 20-109 (317)
61 2z80_A TOLL-like receptor 2, v 99.7 3.3E-17 1.1E-21 186.9 12.5 242 591-877 52-312 (353)
62 2z66_A Variable lymphocyte rec 99.7 2.3E-17 8E-22 184.1 10.7 108 584-694 45-157 (306)
63 2z80_A TOLL-like receptor 2, v 99.7 2.6E-17 8.8E-22 187.8 10.5 252 562-836 52-315 (353)
64 1ozn_A Reticulon 4 receptor; N 99.7 2E-17 6.8E-22 182.5 8.1 200 592-835 33-238 (285)
65 3zyi_A Leucine-rich repeat-con 99.7 2.1E-16 7.2E-21 186.7 17.3 197 591-833 75-277 (452)
66 3zyj_A Leucine-rich repeat-con 99.7 3.1E-16 1.1E-20 184.5 17.8 104 591-697 64-170 (440)
67 2z66_A Variable lymphocyte rec 99.7 8.9E-17 3E-21 179.4 12.0 102 591-696 28-135 (306)
68 3zyj_A Leucine-rich repeat-con 99.7 2.8E-16 9.7E-21 184.9 15.5 240 541-833 46-290 (440)
69 3zyi_A Leucine-rich repeat-con 99.7 4.2E-16 1.4E-20 184.2 15.4 240 541-834 57-302 (452)
70 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-17 1.1E-21 183.5 4.6 242 556-855 28-272 (317)
71 1w5s_A Origin recognition comp 99.6 5.1E-15 1.8E-19 173.0 20.7 312 171-507 22-386 (412)
72 3qfl_A MLA10; coiled-coil, (CC 99.6 6.6E-16 2.3E-20 140.1 9.4 81 13-93 2-84 (115)
73 2p1m_B Transport inhibitor res 99.6 7.2E-19 2.5E-23 216.8 -14.3 114 583-696 58-193 (594)
74 3oja_A Leucine-rich immune mol 99.6 5.3E-16 1.8E-20 184.0 10.7 75 591-671 34-109 (487)
75 1wwl_A Monocyte differentiatio 99.6 2.1E-16 7.3E-21 176.4 6.8 101 593-696 65-182 (312)
76 1ozn_A Reticulon 4 receptor; N 99.6 3.2E-15 1.1E-19 164.8 14.6 195 593-833 13-212 (285)
77 2qen_A Walker-type ATPase; unk 99.6 3.3E-14 1.1E-18 162.1 21.8 294 169-513 10-349 (350)
78 2z62_A TOLL-like receptor 4, v 99.6 1.6E-15 5.6E-20 166.2 10.4 54 779-834 181-236 (276)
79 1wwl_A Monocyte differentiatio 99.6 2.2E-16 7.7E-21 176.2 3.5 241 587-875 39-305 (312)
80 1h6u_A Internalin H; cell adhe 99.6 3.1E-15 1.1E-19 166.3 12.0 191 589-834 39-229 (308)
81 3rfs_A Internalin B, repeat mo 99.6 6.4E-15 2.2E-19 160.8 12.8 207 588-870 38-247 (272)
82 1p9a_G Platelet glycoprotein I 99.6 1.6E-14 5.4E-19 158.8 15.5 103 587-696 6-109 (290)
83 3oja_A Leucine-rich immune mol 99.6 4E-15 1.4E-19 176.4 10.8 218 560-835 32-250 (487)
84 2xwt_C Thyrotropin receptor; s 99.6 6.3E-14 2.1E-18 149.8 18.2 174 948-1127 56-239 (239)
85 2o6q_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 154.3 16.7 99 592-696 17-118 (270)
86 4glp_A Monocyte differentiatio 99.6 7.9E-15 2.7E-19 163.6 11.2 208 589-834 89-306 (310)
87 2z62_A TOLL-like receptor 4, v 99.5 2.3E-14 7.9E-19 157.0 13.3 104 591-696 28-133 (276)
88 2fna_A Conserved hypothetical 99.5 3.8E-13 1.3E-17 153.8 23.6 289 170-511 12-355 (357)
89 2xwt_C Thyrotropin receptor; s 99.5 2.1E-14 7.3E-19 153.4 11.9 172 592-833 32-216 (239)
90 1p9a_G Platelet glycoprotein I 99.5 2.1E-13 7.2E-18 149.8 19.8 194 924-1126 7-207 (290)
91 2ast_B S-phase kinase-associat 99.5 2.6E-15 9E-20 170.1 3.2 256 562-866 47-314 (336)
92 4ay9_X Follicle-stimulating ho 99.5 1.5E-13 5.1E-18 155.9 16.9 100 594-698 12-115 (350)
93 4ay9_X Follicle-stimulating ho 99.5 4E-13 1.4E-17 152.4 19.2 235 778-1100 12-255 (350)
94 2o6q_A Variable lymphocyte rec 99.5 9.7E-13 3.3E-17 143.3 21.6 192 928-1126 17-217 (270)
95 2ca6_A RAN GTPase-activating p 99.5 4.3E-15 1.5E-19 171.7 0.6 63 587-649 56-134 (386)
96 3rfs_A Internalin B, repeat mo 99.5 7.5E-13 2.6E-17 144.3 18.3 169 950-1126 44-217 (272)
97 2ast_B S-phase kinase-associat 99.5 8.9E-15 3E-19 165.7 2.6 248 540-839 49-310 (336)
98 1h6u_A Internalin H; cell adhe 99.5 3.2E-13 1.1E-17 150.0 14.2 191 922-1126 36-229 (308)
99 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.7E-18 151.4 10.8 101 588-696 43-143 (291)
100 3m19_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 142.9 14.7 173 591-834 14-191 (251)
101 2qby_B CDC6 homolog 3, cell di 99.4 3.3E-12 1.1E-16 147.4 21.0 289 171-495 20-340 (384)
102 3m19_A Variable lymphocyte rec 99.4 4.5E-12 1.5E-16 136.3 19.0 169 950-1126 17-191 (251)
103 2ca6_A RAN GTPase-activating p 99.4 2.9E-14 1E-18 164.6 1.5 242 584-835 25-316 (386)
104 3goz_A Leucine-rich repeat-con 99.4 3E-14 1E-18 162.6 1.6 247 577-856 8-295 (362)
105 1m9s_A Internalin B; cell inva 99.4 4.7E-13 1.6E-17 161.5 12.1 101 588-696 40-140 (605)
106 4ezg_A Putative uncharacterize 99.4 7.5E-13 2.5E-17 136.4 10.9 83 589-673 42-124 (197)
107 2v1u_A Cell division control p 99.4 1.4E-11 4.9E-16 142.4 21.8 291 171-494 19-351 (387)
108 1m9s_A Internalin B; cell inva 99.4 3.6E-13 1.2E-17 162.5 7.3 192 590-836 20-211 (605)
109 1fnn_A CDC6P, cell division co 99.4 4.1E-11 1.4E-15 138.6 24.1 294 171-495 17-352 (389)
110 4glp_A Monocyte differentiatio 99.4 2.7E-12 9.1E-17 143.0 13.5 192 927-1125 91-305 (310)
111 3cvr_A Invasion plasmid antige 99.4 1.8E-12 6.1E-17 154.5 12.1 179 591-837 59-245 (571)
112 1h6t_A Internalin B; cell adhe 99.4 3.1E-12 1.1E-16 140.6 13.2 164 950-1126 49-212 (291)
113 1xeu_A Internalin C; cellular 99.3 9.3E-13 3.2E-17 142.3 7.0 168 589-834 17-184 (263)
114 2v9t_B SLIT homolog 2 protein 99.3 1.8E-12 6.2E-17 135.9 7.6 148 542-700 15-165 (220)
115 2o6s_A Variable lymphocyte rec 99.3 2.1E-12 7.2E-17 134.5 7.5 128 539-671 29-158 (208)
116 2qby_A CDC6 homolog 1, cell di 99.3 3.3E-11 1.1E-15 139.2 17.9 295 171-494 20-348 (386)
117 3cvr_A Invasion plasmid antige 99.3 2.9E-11 9.8E-16 144.1 17.6 173 928-1126 60-242 (571)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 3.1E-12 1.1E-16 134.1 8.2 152 541-702 14-168 (220)
119 3goz_A Leucine-rich repeat-con 99.3 8.1E-13 2.8E-17 150.8 3.6 250 547-835 7-297 (362)
120 2o6s_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 127.3 13.4 97 594-695 10-108 (208)
121 4ezg_A Putative uncharacterize 99.3 1.7E-11 5.7E-16 126.3 12.3 143 950-1101 47-191 (197)
122 3e6j_A Variable lymphocyte rec 99.2 1.1E-11 3.7E-16 131.0 9.3 145 543-699 24-171 (229)
123 4b8c_D Glucose-repressible alc 99.2 8.9E-12 3E-16 154.6 9.5 155 537-697 172-326 (727)
124 3e6j_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 122.8 16.1 127 993-1126 40-171 (229)
125 2v9t_B SLIT homolog 2 protein 99.2 1.5E-11 5.1E-16 128.9 8.3 134 536-674 30-165 (220)
126 2v70_A SLIT-2, SLIT homolog 2 99.2 1.7E-11 5.7E-16 128.5 8.2 134 536-674 30-166 (220)
127 2xot_A Amphoterin-induced prot 99.2 2.5E-11 8.7E-16 138.1 10.4 98 594-696 21-121 (361)
128 2ell_A Acidic leucine-rich nuc 99.2 1.4E-11 4.7E-16 123.3 6.9 107 586-697 44-157 (168)
129 1njg_A DNA polymerase III subu 99.2 3.2E-10 1.1E-14 121.8 17.8 198 171-387 23-231 (250)
130 2je0_A Acidic leucine-rich nuc 99.2 8.9E-12 3.1E-16 121.8 4.4 104 586-694 37-147 (149)
131 1a9n_A U2A', U2A'; complex (nu 99.2 2.5E-11 8.6E-16 122.3 7.1 130 558-698 15-151 (176)
132 1xeu_A Internalin C; cellular 99.2 7.3E-11 2.5E-15 127.4 11.0 143 538-698 41-183 (263)
133 1dce_A Protein (RAB geranylger 99.1 6.4E-13 2.2E-17 159.4 -7.4 100 771-872 459-566 (567)
134 2je0_A Acidic leucine-rich nuc 99.1 3E-11 1E-15 118.0 5.3 109 588-698 14-124 (149)
135 2ell_A Acidic leucine-rich nuc 99.1 6.5E-11 2.2E-15 118.3 7.7 134 536-681 22-164 (168)
136 2chg_A Replication factor C sm 99.1 1.3E-09 4.4E-14 115.0 17.7 186 171-386 17-206 (226)
137 1w8a_A SLIT protein; signaling 99.1 4.9E-11 1.7E-15 122.0 6.0 103 592-696 30-135 (192)
138 2xot_A Amphoterin-induced prot 99.1 6.9E-11 2.4E-15 134.5 7.8 146 541-697 21-173 (361)
139 4b8c_D Glucose-repressible alc 99.1 6.8E-12 2.3E-16 155.7 -0.7 112 556-674 218-329 (727)
140 1w8a_A SLIT protein; signaling 99.1 1E-10 3.5E-15 119.6 7.0 126 541-674 11-139 (192)
141 2wfh_A SLIT homolog 2 protein 99.1 2E-10 6.8E-15 117.3 8.7 105 591-698 31-137 (193)
142 1dce_A Protein (RAB geranylger 99.0 2.1E-10 7.3E-15 137.6 8.9 86 587-673 459-545 (567)
143 2wfh_A SLIT homolog 2 protein 99.0 8.2E-10 2.8E-14 112.7 10.4 100 594-697 13-112 (193)
144 1a9n_A U2A', U2A'; complex (nu 99.0 3.3E-10 1.1E-14 114.1 6.9 127 537-673 18-152 (176)
145 1hqc_A RUVB; extended AAA-ATPa 99.0 6.6E-09 2.3E-13 116.4 16.8 268 171-493 12-324 (324)
146 2o6r_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 110.6 8.5 104 591-697 28-134 (177)
147 3g39_A Variable lymphocyte rec 98.9 1.8E-09 6E-14 107.7 7.9 100 593-698 11-113 (170)
148 1sxj_B Activator 1 37 kDa subu 98.9 1.3E-08 4.4E-13 114.0 15.7 186 171-385 21-211 (323)
149 2r9u_A Variable lymphocyte rec 98.9 2.2E-09 7.4E-14 107.4 7.8 98 594-697 15-115 (174)
150 1ds9_A Outer arm dynein; leuci 98.9 2.5E-11 8.7E-16 125.0 -6.8 109 586-698 43-151 (198)
151 2o6r_A Variable lymphocyte rec 98.8 4.4E-09 1.5E-13 105.9 8.3 125 541-674 10-137 (177)
152 1ds9_A Outer arm dynein; leuci 98.8 1.4E-10 4.7E-15 119.4 -3.2 107 558-673 44-152 (198)
153 3sb4_A Hypothetical leucine ri 98.8 1.2E-08 4.3E-13 114.2 11.3 244 590-857 48-309 (329)
154 2r9u_A Variable lymphocyte rec 98.8 5.2E-09 1.8E-13 104.6 6.2 83 591-674 33-118 (174)
155 3sb4_A Hypothetical leucine ri 98.8 1.6E-08 5.5E-13 113.3 10.8 98 992-1097 225-327 (329)
156 3g39_A Variable lymphocyte rec 98.8 6.3E-09 2.1E-13 103.7 6.2 84 591-674 30-115 (170)
157 1iqp_A RFCS; clamp loader, ext 98.7 7.8E-08 2.7E-12 107.8 13.5 183 171-387 25-215 (327)
158 3te6_A Regulatory protein SIR3 98.6 4.4E-07 1.5E-11 98.3 16.4 212 170-387 19-283 (318)
159 2ifg_A High affinity nerve gro 98.6 4.3E-08 1.5E-12 110.9 8.2 98 596-697 13-113 (347)
160 1jr3_A DNA polymerase III subu 98.6 8.4E-07 2.9E-11 101.4 17.3 196 171-385 16-222 (373)
161 4fdw_A Leucine rich hypothetic 98.5 1.4E-06 4.8E-11 99.5 17.8 119 561-694 112-233 (401)
162 2chq_A Replication factor C sm 98.5 1.1E-06 3.9E-11 97.8 14.9 183 171-385 17-205 (319)
163 2ifg_A High affinity nerve gro 98.4 1.9E-07 6.5E-12 105.6 7.1 94 578-674 20-116 (347)
164 4fdw_A Leucine rich hypothetic 98.4 2.2E-06 7.5E-11 97.9 15.3 228 550-833 124-356 (401)
165 3bos_A Putative DNA replicatio 98.4 5.9E-07 2E-11 95.6 9.5 175 171-385 28-218 (242)
166 1jbk_A CLPB protein; beta barr 98.3 1.2E-06 4E-11 89.5 10.2 45 171-221 22-66 (195)
167 2z4s_A Chromosomal replication 98.3 5.6E-06 1.9E-10 95.6 16.8 181 198-402 130-331 (440)
168 3pfi_A Holliday junction ATP-d 98.3 2.2E-05 7.5E-10 88.0 20.7 178 171-384 29-227 (338)
169 1sxj_D Activator 1 41 kDa subu 98.3 5.8E-06 2E-10 93.6 14.9 196 171-384 37-235 (353)
170 3pvs_A Replication-associated 98.3 1.5E-05 5.3E-10 91.6 17.8 183 171-384 26-215 (447)
171 4fs7_A Uncharacterized protein 98.3 4E-05 1.4E-09 87.9 21.3 103 988-1100 271-375 (394)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.9E-05 9.7E-10 83.5 17.6 187 171-383 6-221 (262)
173 3h4m_A Proteasome-activating n 98.2 6.2E-06 2.1E-10 90.0 12.2 184 171-382 17-229 (285)
174 3uk6_A RUVB-like 2; hexameric 98.2 3.2E-05 1.1E-09 87.9 17.6 197 171-382 44-301 (368)
175 1sxj_A Activator 1 95 kDa subu 98.1 1.9E-05 6.6E-10 93.5 15.8 197 171-384 39-253 (516)
176 3un9_A NLR family member X1; l 98.1 1.7E-07 5.9E-12 106.0 -1.9 131 562-697 101-249 (372)
177 1sxj_E Activator 1 40 kDa subu 98.1 1.1E-05 3.9E-10 91.1 12.6 197 171-385 14-238 (354)
178 3e4g_A ATP synthase subunit S, 98.1 6.6E-07 2.2E-11 87.2 1.5 87 1017-1106 62-154 (176)
179 3syl_A Protein CBBX; photosynt 98.1 3.4E-05 1.2E-09 85.2 14.7 160 172-349 32-219 (309)
180 3u61_B DNA polymerase accessor 98.1 1.2E-05 4E-10 89.6 10.9 175 171-381 26-213 (324)
181 4fs7_A Uncharacterized protein 98.0 0.00016 5.3E-09 82.9 20.3 142 970-1123 230-375 (394)
182 1a5t_A Delta prime, HOLB; zinc 98.0 0.00011 3.8E-09 81.6 17.8 172 177-384 8-205 (334)
183 3rw6_A Nuclear RNA export fact 98.0 3.9E-06 1.3E-10 88.6 5.4 88 579-667 158-257 (267)
184 1d2n_A N-ethylmaleimide-sensit 98.0 0.0001 3.6E-09 79.4 16.7 195 172-401 34-259 (272)
185 3un9_A NLR family member X1; l 98.0 2.7E-06 9.1E-11 96.2 4.1 133 538-675 101-253 (372)
186 2p65_A Hypothetical protein PF 98.0 1.3E-05 4.4E-10 81.1 8.2 45 171-221 22-66 (187)
187 1l8q_A Chromosomal replication 97.9 8.2E-05 2.8E-09 82.6 15.0 155 198-379 37-203 (324)
188 3n70_A Transport activator; si 97.9 2E-05 7E-10 75.6 8.0 114 172-316 2-115 (145)
189 3eie_A Vacuolar protein sortin 97.9 0.00015 5E-09 80.3 16.0 188 170-384 17-228 (322)
190 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00035 1.2E-08 77.0 18.8 189 171-385 12-224 (322)
191 1sxj_C Activator 1 40 kDa subu 97.9 0.00014 4.9E-09 81.2 15.5 175 171-380 25-208 (340)
192 3d8b_A Fidgetin-like protein 1 97.9 0.00017 5.7E-09 81.0 15.8 188 171-385 84-296 (357)
193 1io0_A Tropomodulin; LRR prote 97.8 4E-06 1.4E-10 84.4 1.9 93 581-673 26-135 (185)
194 3e4g_A ATP synthase subunit S, 97.8 5E-06 1.7E-10 81.0 2.3 86 971-1057 62-154 (176)
195 2qp9_X Vacuolar protein sortin 97.8 0.00036 1.2E-08 78.1 17.4 185 171-384 51-261 (355)
196 1io0_A Tropomodulin; LRR prote 97.8 2.8E-05 9.6E-10 78.1 7.0 118 557-674 31-164 (185)
197 3b9p_A CG5977-PA, isoform A; A 97.8 0.00044 1.5E-08 75.6 17.2 185 171-384 21-233 (297)
198 3ec2_A DNA replication protein 97.8 3.5E-05 1.2E-09 77.3 7.2 122 176-317 19-143 (180)
199 2w58_A DNAI, primosome compone 97.7 4.3E-05 1.5E-09 78.2 8.0 118 179-316 37-158 (202)
200 3cf0_A Transitional endoplasmi 97.7 0.0003 1E-08 76.8 15.0 181 171-379 15-223 (301)
201 3co5_A Putative two-component 97.6 3.7E-05 1.3E-09 73.5 5.1 110 172-316 5-115 (143)
202 1in4_A RUVB, holliday junction 97.6 0.0028 9.7E-08 70.2 20.9 177 171-383 25-222 (334)
203 2gno_A DNA polymerase III, gam 97.6 0.00034 1.2E-08 76.0 13.0 148 176-347 2-152 (305)
204 4b4t_J 26S protease regulatory 97.6 0.00083 2.8E-08 74.5 16.1 179 171-377 148-354 (405)
205 3vfd_A Spastin; ATPase, microt 97.6 0.00082 2.8E-08 76.5 16.5 188 170-384 114-326 (389)
206 2zan_A Vacuolar protein sortin 97.6 0.00084 2.9E-08 77.6 16.7 188 171-384 134-345 (444)
207 2ra8_A Uncharacterized protein 97.6 2.7E-05 9.4E-10 87.0 3.7 81 587-669 135-227 (362)
208 4fcw_A Chaperone protein CLPB; 97.5 0.00055 1.9E-08 75.5 13.7 138 172-316 18-169 (311)
209 3rw6_A Nuclear RNA export fact 97.5 1.8E-05 6.1E-10 83.5 1.3 96 596-695 148-259 (267)
210 3hu3_A Transitional endoplasmi 97.5 0.00066 2.3E-08 78.9 14.3 185 171-383 204-414 (489)
211 1ofh_A ATP-dependent HSL prote 97.5 0.0012 4.1E-08 72.7 15.7 153 171-345 15-213 (310)
212 1qvr_A CLPB protein; coiled co 97.5 0.00034 1.2E-08 88.3 12.6 156 171-347 170-345 (854)
213 4b4t_L 26S protease subunit RP 97.5 0.0016 5.5E-08 73.6 16.2 180 170-377 180-387 (437)
214 4gt6_A Cell surface protein; l 97.5 0.0012 4.2E-08 75.4 15.6 109 554-670 55-169 (394)
215 3pxg_A Negative regulator of g 97.4 0.00063 2.2E-08 79.2 12.4 148 171-348 180-339 (468)
216 2bjv_A PSP operon transcriptio 97.4 0.00053 1.8E-08 73.5 10.8 47 171-221 6-52 (265)
217 1lv7_A FTSH; alpha/beta domain 97.4 0.0021 7.3E-08 68.4 15.4 183 171-381 12-222 (257)
218 2kjq_A DNAA-related protein; s 97.4 8.7E-05 3E-09 71.2 3.9 87 198-316 36-124 (149)
219 4b4t_H 26S protease regulatory 97.4 0.0025 8.4E-08 71.7 15.7 179 171-377 209-415 (467)
220 4b4t_K 26S protease regulatory 97.3 0.0015 5.2E-08 73.6 13.8 180 170-377 171-379 (428)
221 4h09_A Hypothetical leucine ri 97.3 0.014 4.7E-07 66.2 21.9 130 969-1109 216-349 (379)
222 2ra8_A Uncharacterized protein 97.3 0.00048 1.6E-08 76.9 9.1 128 538-673 172-319 (362)
223 4gt6_A Cell surface protein; l 97.3 0.0025 8.6E-08 72.7 15.2 124 540-670 66-191 (394)
224 1ojl_A Transcriptional regulat 97.2 0.00049 1.7E-08 75.1 7.8 47 171-221 2-48 (304)
225 4b4t_I 26S protease regulatory 97.2 0.0039 1.3E-07 69.3 14.6 179 171-377 182-388 (437)
226 4b4t_M 26S protease regulatory 97.2 0.0015 5E-08 73.8 11.4 179 171-377 181-387 (434)
227 2c9o_A RUVB-like 1; hexameric 97.2 0.0028 9.5E-08 73.6 14.2 97 280-384 298-410 (456)
228 2ce7_A Cell division protein F 97.1 0.003 1E-07 72.6 13.7 179 171-377 16-221 (476)
229 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0023 8E-08 79.9 13.9 159 171-347 186-362 (758)
230 3pxi_A Negative regulator of g 97.1 0.0023 7.9E-08 79.7 13.8 149 171-347 180-338 (758)
231 3pxi_A Negative regulator of g 97.0 0.0015 5.1E-08 81.5 10.7 156 171-347 491-675 (758)
232 2r62_A Cell division protease 97.0 0.00041 1.4E-08 74.6 4.2 158 171-348 11-197 (268)
233 2r44_A Uncharacterized protein 97.0 0.0015 5.2E-08 72.5 9.0 152 172-349 28-200 (331)
234 3t15_A Ribulose bisphosphate c 96.9 0.0044 1.5E-07 67.1 11.4 26 196-221 34-59 (293)
235 2qgz_A Helicase loader, putati 96.8 0.00066 2.2E-08 74.1 4.5 41 178-221 135-175 (308)
236 4h09_A Hypothetical leucine ri 96.8 0.018 6.1E-07 65.3 16.6 79 770-852 258-340 (379)
237 3m6a_A ATP-dependent protease 96.8 0.0023 7.9E-08 75.8 8.8 162 171-347 81-266 (543)
238 3cf2_A TER ATPase, transitiona 96.8 0.012 4E-07 71.8 15.0 180 170-377 203-407 (806)
239 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0014 4.7E-08 70.1 4.7 68 198-287 123-192 (331)
240 1r6b_X CLPA protein; AAA+, N-t 96.4 0.012 4.1E-07 73.5 12.1 134 171-316 458-607 (758)
241 1g5t_A COB(I)alamin adenosyltr 96.3 0.0068 2.3E-07 59.8 7.5 117 200-318 30-164 (196)
242 1ixz_A ATP-dependent metallopr 96.3 0.021 7.3E-07 60.3 12.1 156 171-347 16-199 (254)
243 2b8t_A Thymidine kinase; deoxy 96.3 0.0037 1.3E-07 63.8 5.5 113 198-318 12-127 (223)
244 1iy2_A ATP-dependent metallopr 96.3 0.018 6.2E-07 61.8 11.2 158 170-348 39-224 (278)
245 1ypw_A Transitional endoplasmi 96.2 0.0088 3E-07 74.3 9.7 159 170-348 203-386 (806)
246 2cvh_A DNA repair and recombin 96.2 0.016 5.4E-07 59.8 10.2 84 198-287 20-115 (220)
247 1qvr_A CLPB protein; coiled co 96.2 0.01 3.5E-07 74.8 10.3 136 172-316 559-710 (854)
248 2x8a_A Nuclear valosin-contain 96.2 0.035 1.2E-06 59.1 13.0 156 171-347 10-191 (274)
249 1um8_A ATP-dependent CLP prote 96.1 0.067 2.3E-06 60.2 15.5 50 171-220 21-94 (376)
250 1g8p_A Magnesium-chelatase 38 96.1 0.034 1.2E-06 62.1 12.7 45 171-221 24-68 (350)
251 2dhr_A FTSH; AAA+ protein, hex 95.9 0.043 1.5E-06 63.4 12.4 175 171-377 31-236 (499)
252 1n0w_A DNA repair protein RAD5 95.6 0.03 1E-06 58.7 9.3 89 198-287 24-129 (243)
253 3hr8_A Protein RECA; alpha and 95.6 0.024 8.1E-07 62.3 8.4 84 197-287 60-149 (356)
254 3rfe_A Platelet glycoprotein I 95.5 0.016 5.6E-07 53.6 5.9 54 594-649 11-67 (130)
255 1jr3_D DNA polymerase III, del 95.5 0.16 5.4E-06 56.3 15.2 158 198-384 18-185 (343)
256 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.033 1.1E-06 57.9 8.3 115 198-317 23-168 (235)
257 1ye8_A Protein THEP1, hypothet 95.3 0.066 2.3E-06 52.7 9.9 22 200-221 2-23 (178)
258 3io5_A Recombination and repai 95.2 0.061 2.1E-06 57.2 9.4 81 200-287 30-121 (333)
259 1xp8_A RECA protein, recombina 95.1 0.044 1.5E-06 60.8 8.7 83 198-287 74-162 (366)
260 2zr9_A Protein RECA, recombina 95.1 0.042 1.4E-06 60.7 8.5 84 197-287 60-149 (349)
261 1v5w_A DMC1, meiotic recombina 95.0 0.093 3.2E-06 58.0 11.0 52 196-247 120-175 (343)
262 1u94_A RECA protein, recombina 94.9 0.036 1.2E-06 61.3 7.2 83 198-287 63-151 (356)
263 2px0_A Flagellar biosynthesis 94.9 0.054 1.8E-06 58.3 8.5 87 197-286 104-191 (296)
264 1rz3_A Hypothetical protein rb 94.9 0.028 9.6E-07 56.9 5.9 42 176-220 3-44 (201)
265 2i1q_A DNA repair and recombin 94.7 0.066 2.3E-06 58.8 8.9 89 197-286 97-213 (322)
266 2z43_A DNA repair and recombin 94.6 0.072 2.4E-06 58.4 8.8 55 198-253 107-165 (324)
267 1cr0_A DNA primase/helicase; R 94.4 0.091 3.1E-06 56.9 8.9 24 198-221 35-58 (296)
268 2cbz_A Multidrug resistance-as 94.3 0.28 9.7E-06 50.7 11.9 23 198-220 31-53 (237)
269 4akg_A Glutathione S-transfera 94.3 0.7 2.4E-05 64.1 18.8 138 200-347 1269-1431(2695)
270 3tqc_A Pantothenate kinase; bi 94.2 0.15 5.2E-06 55.1 9.9 45 174-220 70-114 (321)
271 1pgv_A TMD-1, tropomodulin TMD 94.2 0.088 3E-06 52.1 7.3 63 584-646 63-135 (197)
272 2orw_A Thymidine kinase; TMTK, 94.1 0.018 6.2E-07 57.1 2.3 108 199-317 4-113 (184)
273 2pze_A Cystic fibrosis transme 94.0 0.37 1.3E-05 49.5 12.1 23 198-220 34-56 (229)
274 1pgv_A TMD-1, tropomodulin TMD 94.0 0.063 2.2E-06 53.2 5.9 93 579-671 29-136 (197)
275 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.046 1.6E-06 63.3 5.6 42 172-221 23-64 (500)
276 3c8u_A Fructokinase; YP_612366 93.9 0.043 1.5E-06 55.9 4.6 38 179-220 7-44 (208)
277 3ice_A Transcription terminati 93.8 0.084 2.9E-06 57.6 6.9 95 181-286 162-270 (422)
278 1vma_A Cell division protein F 93.7 0.2 6.9E-06 53.9 9.7 43 178-220 82-126 (306)
279 1zp6_A Hypothetical protein AT 93.6 0.042 1.4E-06 55.0 4.0 24 197-220 8-31 (191)
280 3dm5_A SRP54, signal recogniti 93.5 0.4 1.4E-05 54.0 12.0 24 197-220 99-122 (443)
281 1qhx_A CPT, protein (chloramph 93.5 0.033 1.1E-06 55.0 2.9 22 199-220 4-25 (178)
282 4a74_A DNA repair and recombin 93.5 0.28 9.6E-06 50.6 10.2 46 197-242 24-73 (231)
283 2ga8_A Hypothetical 39.9 kDa p 93.4 0.07 2.4E-06 58.0 5.4 45 174-220 2-46 (359)
284 3vaa_A Shikimate kinase, SK; s 93.4 0.037 1.3E-06 55.9 3.1 23 198-220 25-47 (199)
285 3lw7_A Adenylate kinase relate 93.4 0.038 1.3E-06 54.5 3.1 19 200-218 3-21 (179)
286 3kb2_A SPBC2 prophage-derived 93.4 0.035 1.2E-06 54.4 2.9 22 199-220 2-23 (173)
287 2eyu_A Twitching motility prot 93.3 0.023 8E-07 59.9 1.5 112 198-320 25-136 (261)
288 4a1f_A DNAB helicase, replicat 93.3 0.2 6.9E-06 54.5 8.8 51 198-252 46-96 (338)
289 1odf_A YGR205W, hypothetical 3 93.2 0.056 1.9E-06 57.9 4.3 25 196-220 29-53 (290)
290 1sky_E F1-ATPase, F1-ATP synth 93.2 0.11 3.9E-06 58.6 6.8 50 200-250 153-203 (473)
291 1ly1_A Polynucleotide kinase; 93.1 0.046 1.6E-06 54.1 3.3 22 199-220 3-24 (181)
292 1pzn_A RAD51, DNA repair and r 93.1 0.24 8.1E-06 54.7 9.4 48 197-244 130-181 (349)
293 3cf2_A TER ATPase, transitiona 93.1 0.64 2.2E-05 56.8 13.7 158 170-347 476-661 (806)
294 3jvv_A Twitching mobility prot 93.0 0.067 2.3E-06 59.1 4.7 113 198-321 123-235 (356)
295 3bh0_A DNAB-like replicative h 92.9 0.5 1.7E-05 51.3 11.5 51 198-252 68-118 (315)
296 3hws_A ATP-dependent CLP prote 92.9 0.07 2.4E-06 59.7 4.9 50 172-221 16-74 (363)
297 3lda_A DNA repair protein RAD5 92.9 0.28 9.7E-06 54.9 9.7 56 198-254 178-237 (400)
298 3l0o_A Transcription terminati 92.9 0.31 1E-05 53.1 9.4 36 181-221 163-198 (427)
299 1uj2_A Uridine-cytidine kinase 92.9 0.053 1.8E-06 57.1 3.6 25 196-220 20-44 (252)
300 3uie_A Adenylyl-sulfate kinase 92.9 0.061 2.1E-06 54.3 3.9 24 197-220 24-47 (200)
301 1knq_A Gluconate kinase; ALFA/ 92.9 0.072 2.5E-06 52.4 4.3 24 197-220 7-30 (175)
302 3rfe_A Platelet glycoprotein I 92.8 0.11 3.7E-06 48.0 5.1 54 617-673 11-67 (130)
303 2xxa_A Signal recognition part 92.8 0.42 1.4E-05 54.2 11.0 43 179-221 78-123 (433)
304 3kl4_A SRP54, signal recogniti 92.8 0.53 1.8E-05 53.0 11.6 25 197-221 96-120 (433)
305 1kag_A SKI, shikimate kinase I 92.7 0.047 1.6E-06 53.6 2.7 22 199-220 5-26 (173)
306 3trf_A Shikimate kinase, SK; a 92.7 0.05 1.7E-06 54.1 2.9 23 198-220 5-27 (185)
307 2rhm_A Putative kinase; P-loop 92.7 0.071 2.4E-06 53.4 4.1 24 197-220 4-27 (193)
308 2ffh_A Protein (FFH); SRP54, s 92.7 0.22 7.4E-06 56.2 8.3 24 198-221 98-121 (425)
309 1kgd_A CASK, peripheral plasma 92.6 0.057 1.9E-06 53.4 3.0 23 198-220 5-27 (180)
310 1nks_A Adenylate kinase; therm 92.5 0.065 2.2E-06 53.7 3.4 22 199-220 2-23 (194)
311 4eun_A Thermoresistant glucoki 92.5 0.063 2.2E-06 54.2 3.3 23 198-220 29-51 (200)
312 3t61_A Gluconokinase; PSI-biol 92.4 0.055 1.9E-06 54.8 2.7 23 198-220 18-40 (202)
313 1uf9_A TT1252 protein; P-loop, 92.4 0.077 2.6E-06 53.6 3.8 25 196-220 6-30 (203)
314 1zuh_A Shikimate kinase; alpha 92.3 0.06 2.1E-06 52.5 2.9 24 197-220 6-29 (168)
315 2qt1_A Nicotinamide riboside k 92.3 0.084 2.9E-06 53.6 4.0 25 196-220 19-43 (207)
316 3fwy_A Light-independent proto 92.3 0.074 2.5E-06 57.7 3.7 41 196-238 46-86 (314)
317 1y63_A LMAJ004144AAA protein; 92.2 0.078 2.7E-06 52.6 3.5 23 198-220 10-32 (184)
318 1gvn_B Zeta; postsegregational 92.2 0.13 4.5E-06 55.0 5.6 40 180-220 16-55 (287)
319 1fx0_B ATP synthase beta chain 92.2 0.32 1.1E-05 55.0 8.8 98 183-286 155-275 (498)
320 2bdt_A BH3686; alpha-beta prot 92.2 0.077 2.6E-06 53.0 3.5 22 199-220 3-24 (189)
321 1ukz_A Uridylate kinase; trans 92.1 0.086 2.9E-06 53.3 3.8 24 197-220 14-37 (203)
322 3iij_A Coilin-interacting nucl 92.1 0.072 2.4E-06 52.7 3.1 23 198-220 11-33 (180)
323 3asz_A Uridine kinase; cytidin 92.1 0.087 3E-06 53.7 3.8 24 197-220 5-28 (211)
324 1kht_A Adenylate kinase; phosp 92.1 0.071 2.4E-06 53.3 3.1 22 199-220 4-25 (192)
325 2c95_A Adenylate kinase 1; tra 92.0 0.077 2.6E-06 53.3 3.3 23 198-220 9-31 (196)
326 4gp7_A Metallophosphoesterase; 92.0 0.083 2.8E-06 51.7 3.4 23 198-220 9-31 (171)
327 3tau_A Guanylate kinase, GMP k 92.0 0.084 2.9E-06 53.6 3.6 23 198-220 8-30 (208)
328 3llm_A ATP-dependent RNA helic 92.0 0.4 1.4E-05 49.6 8.8 88 200-288 78-187 (235)
329 2ze6_A Isopentenyl transferase 92.0 0.078 2.7E-06 55.7 3.3 22 199-220 2-23 (253)
330 3tr0_A Guanylate kinase, GMP k 91.9 0.083 2.8E-06 53.5 3.4 23 198-220 7-29 (205)
331 2p5t_B PEZT; postsegregational 91.9 0.12 4E-06 54.4 4.7 42 178-220 13-54 (253)
332 1tev_A UMP-CMP kinase; ploop, 91.9 0.083 2.9E-06 53.0 3.4 23 198-220 3-25 (196)
333 2if2_A Dephospho-COA kinase; a 91.9 0.079 2.7E-06 53.7 3.2 21 200-220 3-23 (204)
334 2yvu_A Probable adenylyl-sulfa 91.9 0.1 3.4E-06 51.9 3.9 25 197-221 12-36 (186)
335 2ewv_A Twitching motility prot 91.9 0.2 6.7E-06 55.9 6.7 111 198-320 136-247 (372)
336 2jaq_A Deoxyguanosine kinase; 91.8 0.077 2.6E-06 53.7 3.1 21 200-220 2-22 (205)
337 2ck3_D ATP synthase subunit be 91.8 0.66 2.3E-05 52.3 10.7 65 182-252 142-207 (482)
338 1via_A Shikimate kinase; struc 91.8 0.069 2.3E-06 52.5 2.5 21 200-220 6-26 (175)
339 1xjc_A MOBB protein homolog; s 91.8 0.083 2.8E-06 51.0 3.0 24 197-220 3-26 (169)
340 1jjv_A Dephospho-COA kinase; P 91.8 0.093 3.2E-06 53.2 3.6 22 199-220 3-24 (206)
341 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 0.09 3.1E-06 55.6 3.5 23 198-220 4-26 (260)
342 2j37_W Signal recognition part 91.7 0.76 2.6E-05 53.0 11.5 41 180-220 80-123 (504)
343 2qor_A Guanylate kinase; phosp 91.7 0.069 2.4E-06 54.1 2.5 24 197-220 11-34 (204)
344 3umf_A Adenylate kinase; rossm 91.6 0.12 4E-06 52.5 4.0 25 196-220 27-51 (217)
345 1ls1_A Signal recognition part 91.6 0.41 1.4E-05 51.4 8.6 24 198-221 98-121 (295)
346 2j41_A Guanylate kinase; GMP, 91.6 0.095 3.2E-06 53.2 3.4 23 198-220 6-28 (207)
347 3e70_C DPA, signal recognition 91.6 0.48 1.6E-05 51.5 9.2 24 197-220 128-151 (328)
348 1qf9_A UMP/CMP kinase, protein 91.5 0.12 4.1E-06 51.7 4.1 23 198-220 6-28 (194)
349 1j8m_F SRP54, signal recogniti 91.5 0.49 1.7E-05 50.7 9.1 23 198-220 98-120 (297)
350 2iyv_A Shikimate kinase, SK; t 91.5 0.067 2.3E-06 53.1 2.1 21 200-220 4-24 (184)
351 3hjn_A DTMP kinase, thymidylat 91.5 0.25 8.6E-06 49.4 6.3 21 200-220 2-22 (197)
352 3cm0_A Adenylate kinase; ATP-b 91.5 0.1 3.5E-06 51.9 3.5 23 198-220 4-26 (186)
353 1zu4_A FTSY; GTPase, signal re 91.4 0.4 1.4E-05 52.0 8.3 24 197-220 104-127 (320)
354 2cdn_A Adenylate kinase; phosp 91.4 0.1 3.5E-06 52.6 3.5 23 198-220 20-42 (201)
355 3a00_A Guanylate kinase, GMP k 91.4 0.076 2.6E-06 52.8 2.4 22 199-220 2-23 (186)
356 2hf9_A Probable hydrogenase ni 91.4 0.16 5.6E-06 52.2 5.1 25 197-221 37-61 (226)
357 2plr_A DTMP kinase, probable t 91.4 0.11 3.6E-06 53.0 3.5 24 198-221 4-27 (213)
358 3vr4_D V-type sodium ATPase su 91.3 0.22 7.4E-06 55.8 6.1 87 200-286 153-257 (465)
359 1ex7_A Guanylate kinase; subst 91.3 0.077 2.6E-06 52.3 2.3 21 200-220 3-23 (186)
360 1cke_A CK, MSSA, protein (cyti 91.3 0.094 3.2E-06 54.1 3.1 22 199-220 6-27 (227)
361 2bbw_A Adenylate kinase 4, AK4 91.3 0.099 3.4E-06 54.8 3.3 23 198-220 27-49 (246)
362 2grj_A Dephospho-COA kinase; T 91.2 0.1 3.5E-06 51.9 3.1 24 197-220 11-34 (192)
363 2bwj_A Adenylate kinase 5; pho 91.2 0.1 3.5E-06 52.5 3.2 22 199-220 13-34 (199)
364 2yhs_A FTSY, cell division pro 91.2 0.56 1.9E-05 53.4 9.4 43 196-241 291-333 (503)
365 1e6c_A Shikimate kinase; phosp 91.1 0.081 2.8E-06 51.8 2.3 22 199-220 3-24 (173)
366 3aez_A Pantothenate kinase; tr 91.1 0.12 4.2E-06 55.9 3.9 25 196-220 88-112 (312)
367 2pt5_A Shikimate kinase, SK; a 91.1 0.11 3.6E-06 50.7 3.1 21 200-220 2-22 (168)
368 3upu_A ATP-dependent DNA helic 91.0 0.28 9.7E-06 56.7 7.1 37 178-221 32-68 (459)
369 1aky_A Adenylate kinase; ATP:A 91.0 0.11 3.6E-06 53.4 3.1 23 198-220 4-26 (220)
370 1rj9_A FTSY, signal recognitio 91.0 0.12 4.2E-06 55.6 3.7 24 197-220 101-124 (304)
371 3vkg_A Dynein heavy chain, cyt 90.9 1.7 5.9E-05 60.9 15.4 82 200-291 1306-1388(3245)
372 2jeo_A Uridine-cytidine kinase 90.9 0.14 4.7E-06 53.6 3.9 24 197-220 24-47 (245)
373 2vli_A Antibiotic resistance p 90.9 0.074 2.5E-06 52.7 1.7 23 198-220 5-27 (183)
374 1htw_A HI0065; nucleotide-bind 90.8 0.15 5.2E-06 48.8 3.8 23 198-220 33-55 (158)
375 1lvg_A Guanylate kinase, GMP k 90.8 0.095 3.2E-06 52.7 2.5 23 198-220 4-26 (198)
376 3tlx_A Adenylate kinase 2; str 90.8 0.17 5.7E-06 52.8 4.4 24 197-220 28-51 (243)
377 3ney_A 55 kDa erythrocyte memb 90.8 0.14 4.7E-06 50.9 3.5 24 197-220 18-41 (197)
378 2pbr_A DTMP kinase, thymidylat 90.8 0.12 4E-06 51.8 3.1 21 200-220 2-22 (195)
379 1nn5_A Similar to deoxythymidy 90.7 0.13 4.3E-06 52.6 3.4 23 198-220 9-31 (215)
380 2wsm_A Hydrogenase expression/ 90.7 0.17 5.9E-06 51.8 4.4 40 176-221 14-53 (221)
381 2f6r_A COA synthase, bifunctio 90.6 0.15 5.3E-06 54.4 4.0 24 197-220 74-97 (281)
382 2wwf_A Thymidilate kinase, put 90.6 0.13 4.3E-06 52.5 3.2 23 198-220 10-32 (212)
383 3gqb_B V-type ATP synthase bet 90.5 0.24 8.3E-06 55.4 5.5 88 199-286 148-260 (464)
384 2pez_A Bifunctional 3'-phospho 90.5 0.15 5E-06 50.3 3.5 23 198-220 5-27 (179)
385 4e22_A Cytidylate kinase; P-lo 90.5 0.13 4.6E-06 53.9 3.4 23 198-220 27-49 (252)
386 1zd8_A GTP:AMP phosphotransfer 90.5 0.12 4.3E-06 53.2 3.1 23 198-220 7-29 (227)
387 1znw_A Guanylate kinase, GMP k 90.5 0.14 4.6E-06 52.0 3.3 23 198-220 20-42 (207)
388 2z0h_A DTMP kinase, thymidylat 90.3 0.25 8.7E-06 49.4 5.2 21 200-220 2-22 (197)
389 1sq5_A Pantothenate kinase; P- 90.2 0.32 1.1E-05 52.8 6.2 25 196-220 78-102 (308)
390 1tue_A Replication protein E1; 90.1 0.19 6.6E-06 49.6 3.9 37 180-221 45-81 (212)
391 2pt7_A CAG-ALFA; ATPase, prote 90.1 0.42 1.4E-05 52.2 7.0 106 199-319 172-277 (330)
392 1z6g_A Guanylate kinase; struc 90.1 0.13 4.4E-06 52.6 2.7 23 198-220 23-45 (218)
393 1m7g_A Adenylylsulfate kinase; 90.0 0.17 5.8E-06 51.5 3.6 23 198-220 25-47 (211)
394 1g41_A Heat shock protein HSLU 90.0 0.27 9.1E-06 55.6 5.4 50 171-220 15-72 (444)
395 3cmu_A Protein RECA, recombina 90.0 0.33 1.1E-05 64.8 7.1 84 197-287 1426-1515(2050)
396 3b85_A Phosphate starvation-in 90.0 0.19 6.6E-06 50.7 3.9 21 200-220 24-44 (208)
397 2v54_A DTMP kinase, thymidylat 89.9 0.16 5.4E-06 51.3 3.3 23 198-220 4-26 (204)
398 1zak_A Adenylate kinase; ATP:A 89.9 0.14 4.7E-06 52.7 2.8 23 198-220 5-27 (222)
399 1vht_A Dephospho-COA kinase; s 89.9 0.18 6.1E-06 51.6 3.7 23 198-220 4-26 (218)
400 3b9q_A Chloroplast SRP recepto 89.9 0.18 6.1E-06 54.3 3.7 24 197-220 99-122 (302)
401 3p32_A Probable GTPase RV1496/ 89.9 0.29 9.8E-06 54.3 5.6 37 180-220 65-101 (355)
402 4edh_A DTMP kinase, thymidylat 89.8 0.61 2.1E-05 47.1 7.5 24 198-221 6-29 (213)
403 2i3b_A HCR-ntpase, human cance 89.8 0.14 4.8E-06 50.8 2.6 22 200-221 3-24 (189)
404 1q57_A DNA primase/helicase; d 89.7 0.72 2.5E-05 54.0 9.2 53 197-252 241-293 (503)
405 3fb4_A Adenylate kinase; psych 89.7 0.16 5.5E-06 51.9 3.1 21 200-220 2-22 (216)
406 1s96_A Guanylate kinase, GMP k 89.7 0.17 5.9E-06 51.5 3.3 24 197-220 15-38 (219)
407 3k1j_A LON protease, ATP-depen 89.6 0.2 6.8E-06 60.2 4.2 42 171-220 41-82 (604)
408 3a8t_A Adenylate isopentenyltr 89.5 0.21 7.2E-06 53.9 3.9 23 198-220 40-62 (339)
409 1gtv_A TMK, thymidylate kinase 89.5 0.096 3.3E-06 53.5 1.2 21 200-220 2-22 (214)
410 3dl0_A Adenylate kinase; phosp 89.5 0.17 5.8E-06 51.7 3.1 21 200-220 2-22 (216)
411 3nwj_A ATSK2; P loop, shikimat 89.5 0.14 4.6E-06 53.4 2.4 22 199-220 49-70 (250)
412 2f1r_A Molybdopterin-guanine d 89.2 0.13 4.3E-06 50.1 1.7 22 199-220 3-24 (171)
413 3end_A Light-independent proto 89.1 0.35 1.2E-05 52.5 5.5 44 196-241 39-82 (307)
414 3ake_A Cytidylate kinase; CMP 89.1 0.19 6.5E-06 50.9 3.1 21 200-220 4-24 (208)
415 3d3q_A TRNA delta(2)-isopenten 89.1 0.2 6.9E-06 54.3 3.4 22 199-220 8-29 (340)
416 2onk_A Molybdate/tungstate ABC 89.0 0.2 6.7E-06 51.9 3.1 22 199-220 25-46 (240)
417 2pcj_A ABC transporter, lipopr 89.0 0.2 7E-06 51.3 3.2 22 199-220 31-52 (224)
418 3be4_A Adenylate kinase; malar 88.9 0.17 5.9E-06 51.7 2.7 22 199-220 6-27 (217)
419 3r20_A Cytidylate kinase; stru 88.9 0.2 6.9E-06 51.3 3.1 23 198-220 9-31 (233)
420 2c61_A A-type ATP synthase non 88.9 0.36 1.2E-05 54.4 5.4 99 183-286 142-258 (469)
421 2r6a_A DNAB helicase, replicat 88.9 0.95 3.2E-05 52.1 9.2 50 198-250 203-252 (454)
422 2ged_A SR-beta, signal recogni 88.8 0.32 1.1E-05 48.4 4.5 26 196-221 46-71 (193)
423 2og2_A Putative signal recogni 88.7 0.24 8.2E-06 54.5 3.8 24 197-220 156-179 (359)
424 2ehv_A Hypothetical protein PH 88.7 0.21 7.2E-06 52.3 3.2 23 198-220 30-52 (251)
425 3e1s_A Exodeoxyribonuclease V, 88.6 0.39 1.3E-05 56.9 5.8 22 199-220 205-226 (574)
426 3tif_A Uncharacterized ABC tra 88.6 0.22 7.5E-06 51.5 3.2 23 198-220 31-53 (235)
427 1e4v_A Adenylate kinase; trans 88.6 0.22 7.7E-06 50.7 3.2 21 200-220 2-22 (214)
428 1yrb_A ATP(GTP)binding protein 88.5 0.31 1.1E-05 51.5 4.4 25 196-220 12-36 (262)
429 2q6t_A DNAB replication FORK h 88.5 1.2 4E-05 51.2 9.5 51 198-251 200-250 (444)
430 1np6_A Molybdopterin-guanine d 88.4 0.23 7.8E-06 48.4 3.0 23 198-220 6-28 (174)
431 2xb4_A Adenylate kinase; ATP-b 88.4 0.23 7.7E-06 51.0 3.1 21 200-220 2-22 (223)
432 3vr4_A V-type sodium ATPase ca 88.4 1.1 3.8E-05 51.4 8.9 58 182-248 221-279 (600)
433 3exa_A TRNA delta(2)-isopenten 88.3 0.26 9E-06 52.4 3.6 23 198-220 3-25 (322)
434 3crm_A TRNA delta(2)-isopenten 88.3 0.24 8.3E-06 53.3 3.3 22 199-220 6-27 (323)
435 1q3t_A Cytidylate kinase; nucl 88.3 0.25 8.6E-06 51.2 3.4 25 196-220 14-38 (236)
436 3lnc_A Guanylate kinase, GMP k 88.3 0.17 5.7E-06 52.4 2.0 23 198-220 27-50 (231)
437 1ak2_A Adenylate kinase isoenz 88.2 0.24 8.4E-06 51.2 3.3 23 198-220 16-38 (233)
438 3sr0_A Adenylate kinase; phosp 88.2 0.24 8.4E-06 49.8 3.1 21 200-220 2-22 (206)
439 3v9p_A DTMP kinase, thymidylat 88.0 0.38 1.3E-05 49.1 4.4 24 198-221 25-48 (227)
440 2r9v_A ATP synthase subunit al 88.0 0.62 2.1E-05 52.8 6.5 94 182-286 164-276 (515)
441 3mfy_A V-type ATP synthase alp 88.0 1 3.5E-05 51.5 8.2 59 182-249 216-275 (588)
442 3gfo_A Cobalt import ATP-bindi 88.0 0.25 8.4E-06 52.3 3.1 22 199-220 35-56 (275)
443 1b0u_A Histidine permease; ABC 88.0 0.25 8.5E-06 52.0 3.1 23 198-220 32-54 (262)
444 4eaq_A DTMP kinase, thymidylat 87.9 0.41 1.4E-05 49.2 4.7 25 197-221 25-49 (229)
445 2qe7_A ATP synthase subunit al 87.9 0.71 2.4E-05 52.3 6.9 94 182-286 151-263 (502)
446 1ji0_A ABC transporter; ATP bi 87.7 0.27 9.1E-06 51.0 3.2 22 199-220 33-54 (240)
447 1sgw_A Putative ABC transporte 87.7 0.23 7.8E-06 50.3 2.6 22 199-220 36-57 (214)
448 2olj_A Amino acid ABC transpor 87.7 0.26 9E-06 51.7 3.1 23 198-220 50-72 (263)
449 3foz_A TRNA delta(2)-isopenten 87.7 0.33 1.1E-05 51.5 3.9 24 197-220 9-32 (316)
450 3vkw_A Replicase large subunit 87.6 1 3.5E-05 50.5 7.9 26 195-220 158-183 (446)
451 2v3c_C SRP54, signal recogniti 87.6 0.31 1.1E-05 55.3 3.8 43 179-221 77-122 (432)
452 1g6h_A High-affinity branched- 87.6 0.27 9.3E-06 51.6 3.2 23 198-220 33-55 (257)
453 4g1u_C Hemin import ATP-bindin 87.5 0.27 9.3E-06 51.8 3.1 23 198-220 37-59 (266)
454 1oix_A RAS-related protein RAB 87.5 0.34 1.2E-05 48.3 3.7 24 198-221 29-52 (191)
455 1mv5_A LMRA, multidrug resista 87.5 0.33 1.1E-05 50.5 3.7 23 198-220 28-50 (243)
456 3bgw_A DNAB-like replicative h 87.5 2.1 7.3E-05 48.7 10.8 50 198-251 197-246 (444)
457 2d2e_A SUFC protein; ABC-ATPas 87.5 0.29 9.9E-06 51.1 3.3 22 199-220 30-51 (250)
458 2vp4_A Deoxynucleoside kinase; 87.4 0.32 1.1E-05 50.2 3.5 25 196-220 18-42 (230)
459 1vpl_A ABC transporter, ATP-bi 87.3 0.29 9.8E-06 51.2 3.1 23 198-220 41-63 (256)
460 3cmw_A Protein RECA, recombina 87.3 0.62 2.1E-05 61.4 6.8 84 198-288 732-821 (1706)
461 2xau_A PRE-mRNA-splicing facto 87.3 2.3 7.9E-05 52.3 11.6 32 180-219 99-130 (773)
462 2ff7_A Alpha-hemolysin translo 87.3 0.29 1E-05 50.9 3.2 22 199-220 36-57 (247)
463 1a7j_A Phosphoribulokinase; tr 87.3 0.15 5.2E-06 54.6 1.0 24 197-220 4-27 (290)
464 4hlc_A DTMP kinase, thymidylat 87.3 0.81 2.8E-05 45.9 6.3 23 199-221 3-25 (205)
465 2zu0_C Probable ATP-dependent 87.2 0.3 1E-05 51.5 3.2 23 198-220 46-68 (267)
466 2wji_A Ferrous iron transport 87.2 0.37 1.3E-05 46.6 3.7 23 199-221 4-26 (165)
467 1ltq_A Polynucleotide kinase; 87.1 0.3 1E-05 52.8 3.3 22 199-220 3-24 (301)
468 2qi9_C Vitamin B12 import ATP- 87.0 0.31 1.1E-05 50.7 3.1 22 199-220 27-48 (249)
469 2ixe_A Antigen peptide transpo 86.8 0.32 1.1E-05 51.5 3.2 23 198-220 45-67 (271)
470 1svm_A Large T antigen; AAA+ f 86.8 0.5 1.7E-05 52.3 4.9 24 197-220 168-191 (377)
471 2zej_A Dardarin, leucine-rich 86.8 0.31 1E-05 48.2 2.9 22 200-221 4-25 (184)
472 3zvl_A Bifunctional polynucleo 86.8 0.32 1.1E-05 55.2 3.4 25 196-220 256-280 (416)
473 2ghi_A Transport protein; mult 86.7 0.34 1.2E-05 50.9 3.3 23 198-220 46-68 (260)
474 1xx6_A Thymidine kinase; NESG, 86.7 0.37 1.3E-05 47.7 3.3 109 198-317 8-118 (191)
475 2yz2_A Putative ABC transporte 86.6 0.33 1.1E-05 51.2 3.2 23 198-220 33-55 (266)
476 2ihy_A ABC transporter, ATP-bi 86.6 0.33 1.1E-05 51.5 3.1 22 199-220 48-69 (279)
477 2nq2_C Hypothetical ABC transp 86.6 0.33 1.1E-05 50.7 3.1 22 199-220 32-53 (253)
478 3oaa_A ATP synthase subunit al 86.5 1.5 5E-05 49.7 8.3 93 183-286 152-263 (513)
479 1fx0_A ATP synthase alpha chai 86.5 0.73 2.5E-05 52.3 6.0 82 199-286 164-264 (507)
480 2dr3_A UPF0273 protein PH0284; 86.4 0.43 1.5E-05 49.7 4.0 38 198-237 23-60 (247)
481 2v9p_A Replication protein E1; 86.4 0.35 1.2E-05 51.8 3.2 23 198-220 126-148 (305)
482 1cp2_A CP2, nitrogenase iron p 86.4 0.61 2.1E-05 49.4 5.2 39 199-239 2-40 (269)
483 1tf7_A KAIC; homohexamer, hexa 86.2 0.56 1.9E-05 55.2 5.2 24 198-221 281-304 (525)
484 2fz4_A DNA repair protein RAD2 86.2 2.7 9.1E-05 43.3 9.9 100 201-314 111-226 (237)
485 2j9r_A Thymidine kinase; TK1, 86.2 1 3.5E-05 45.0 6.2 110 198-318 28-139 (214)
486 2afh_E Nitrogenase iron protei 86.2 0.63 2.2E-05 49.9 5.2 40 198-239 2-41 (289)
487 2qmh_A HPR kinase/phosphorylas 86.1 0.38 1.3E-05 47.3 3.0 23 198-220 34-56 (205)
488 2ocp_A DGK, deoxyguanosine kin 86.0 0.43 1.5E-05 49.6 3.6 23 198-220 2-24 (241)
489 1u0j_A DNA replication protein 86.0 0.68 2.3E-05 48.1 5.0 37 180-220 90-126 (267)
490 1nlf_A Regulatory protein REPA 85.9 0.4 1.4E-05 51.2 3.4 23 198-220 30-52 (279)
491 2f9l_A RAB11B, member RAS onco 85.9 0.37 1.3E-05 48.3 3.0 24 198-221 5-28 (199)
492 2dyk_A GTP-binding protein; GT 85.8 0.44 1.5E-05 45.6 3.4 23 199-221 2-24 (161)
493 2ck3_A ATP synthase subunit al 85.8 0.9 3.1E-05 51.6 6.2 98 182-286 151-271 (510)
494 2wjg_A FEOB, ferrous iron tran 85.7 0.57 2E-05 46.3 4.3 24 198-221 7-30 (188)
495 2r8r_A Sensor protein; KDPD, P 85.6 0.91 3.1E-05 45.8 5.5 107 200-317 8-127 (228)
496 3dzd_A Transcriptional regulat 85.5 2.3 7.8E-05 47.2 9.4 129 172-316 130-272 (368)
497 3cmu_A Protein RECA, recombina 85.3 1 3.5E-05 60.3 7.4 84 197-287 382-471 (2050)
498 2pjz_A Hypothetical protein ST 85.3 0.42 1.4E-05 50.2 3.1 22 199-220 31-52 (263)
499 3cmw_A Protein RECA, recombina 85.1 0.97 3.3E-05 59.6 7.0 84 197-287 382-471 (1706)
500 2lkc_A Translation initiation 85.0 0.62 2.1E-05 45.5 4.1 25 197-221 7-31 (178)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-48 Score=469.45 Aligned_cols=315 Identities=16% Similarity=0.236 Sum_probs=256.6
Q ss_pred ccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc--ccccccccceeEEEEecCCC--ChHHHHHHH
Q 000983 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN--EERVREHFESRMWVCVTVDY--DLPRILKGM 249 (1199)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 249 (1199)
|||+.++++|.++|.... ....+||+|+||||+||||||++||+ +.+++.+|+.++||++++.+ +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997642 24589999999999999999999998 67899999999999999885 789999999
Q ss_pred HHhcccCCC-------CCCcHHHHHHHHHHHhCCC-eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhh
Q 000983 250 IEFHSKMEQ-------STSSISLLETRLLEFLTGQ-RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 250 ~~~~~~~~~-------~~~~~~~l~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1199)
+.+++.... ...+.+.+...+++.|+++ ||||||||||+.+...| + ..+||+||||||++.|+.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~-------~-~~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRW-------A-QELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHH-------H-HHTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcc-------c-ccCCCEEEEEcCCHHHHH
Confidence 999876522 1234567889999999996 99999999997532122 2 127999999999999998
Q ss_pred hhc-CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHHH
Q 000983 322 IMG-IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKIL 400 (1199)
Q Consensus 322 ~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l 400 (1199)
.++ ...+|+|++|+.++||+||.++||... .++.+++++++|+++|+|+||||+++|+.|+.+ . .+|...+
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~------~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l 351 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP------VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQL 351 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHh
Confidence 776 336799999999999999999998653 236778899999999999999999999999765 2 3444455
Q ss_pred hhhccccccCCCCCCCcccchhhcccCCChhhHHHHH-----------HhccCCCCcccCHHHHHHHHHHc--cccccCC
Q 000983 401 SSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFS-----------LCSIFPKSYAFDKAEMVKFWMAE--ALIQSRG 467 (1199)
Q Consensus 401 ~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~W~ae--g~i~~~~ 467 (1199)
.+..+... ..++.++|.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+
T Consensus 352 ~~~l~~~~-----~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~ 422 (549)
T 2a5y_B 352 NNKLESRG-----LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNE 422 (549)
T ss_dssp HHHHHHHC-----SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC------
T ss_pred HHHhhccc-----HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCC
Confidence 54444321 357999999999999999999999 999999999999 8999999 9997654
Q ss_pred CCCCccHHHHHHHHHHHHHhccCcccccCCCcceEEehHHHHHHHHHhcCCC
Q 000983 468 GGRQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVSSPY 519 (1199)
Q Consensus 468 ~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~i~~~~ 519 (1199)
++... +++++ ||++|+++|||++...++..+|+|||+||++|+.++.++
T Consensus 423 ~~~~~--~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 423 EEQLD--DEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp -CCCT--HHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred CCCCH--HHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 33333 77887 999999999999876555678999999999999998776
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.5e-39 Score=404.61 Aligned_cols=553 Identities=18% Similarity=0.121 Sum_probs=361.6
Q ss_pred CceeEEEEEeccCCCC---ccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCc-ccCc--ccc
Q 000983 538 PETRHVSLLCKHVEKP---ALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-VLPD--SVE 611 (1199)
Q Consensus 538 ~~~r~lsl~~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~--~i~ 611 (1199)
..++.+++....+... ....+..++.|+.+.+. .+.+.. .+..|..+++|++|+|++|.+. .+|. .++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~-----~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS-----NSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECT-----TSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCc-----CCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 4566666665554432 22345566667666665 111111 1234677888888888888876 5666 788
Q ss_pred cCccccEEeccCCCcc-ccchhh-cccCcccEEecCCCCcccccchh---hccccccceeecccccccccccCCCCcCCc
Q 000983 612 ELKLLRYLDLSRTEIK-VLPNSI-CNLYNLQTLKLIGCIWIMELPKD---LANLVKLRNLELEEMFWFKCSTLPAGIGKL 686 (1199)
Q Consensus 612 ~l~~Lr~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l 686 (1199)
++++|++|+|++|.+. .+|..+ .++++|++|++++|.+.+..|.. +.++++|++|++++|.+... . .++.+
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~--~~~~l 199 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V--DVSRC 199 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC--C--BCTTC
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc--C--CcccC
Confidence 8888888888888776 445544 77888888888888766666665 67788888888888866422 2 23677
Q ss_pred cccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHH
Q 000983 687 TNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEER 766 (1199)
Q Consensus 687 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 766 (1199)
++|++|++.++.. .+..+. ++.+++|+ .|.+.... ........+..+++|+.|+++.|......+
T Consensus 200 ~~L~~L~Ls~n~l-~~~~~~-l~~l~~L~-~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----------- 264 (768)
T 3rgz_A 200 VNLEFLDVSSNNF-STGIPF-LGDCSALQ-HLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIP----------- 264 (768)
T ss_dssp TTCCEEECCSSCC-CSCCCB-CTTCCSCC-EEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCC-----------
T ss_pred CcCCEEECcCCcC-CCCCcc-cccCCCCC-EEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccC-----------
Confidence 8888888876543 222222 66666666 55544322 112334456777788888887775542222
Q ss_pred HhhccCCCCCCcEEEEeecCCC-CCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecCC--C
Q 000983 767 LLEDLQPHPNLEELQIFNYFGN-SLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWPN--D 841 (1199)
Q Consensus 767 ~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~--~ 841 (1199)
. ..+++|+.|+++++... .+|.++. ..+++|+.|+|++|.+.... .++.+++|++|++++|.....++. +
T Consensus 265 ---~-~~l~~L~~L~L~~n~l~~~ip~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l 339 (768)
T 3rgz_A 265 ---P-LPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339 (768)
T ss_dssp ---C-CCCTTCCEEECCSSEEEESCCCCSC-TTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH
T ss_pred ---c-cccCCCCEEECcCCccCCccCHHHH-hhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH
Confidence 1 15667888888765443 6676663 23478888888888776544 577788888888888766545552 5
Q ss_pred CCcccccccccCCCCCCCcCCCc---C-CCcCeEEEecccccccCCC------CCchheeeeeccccccchhcccccccc
Q 000983 842 EDCRFLGRLKISNCPRLNELPEC---M-PNLTVMKIKKCCSLKALPV------TPFLQFLILVDNLELENWNERCLRVIP 911 (1199)
Q Consensus 842 ~~~~~L~~L~l~~~~~l~~~~~~---~-~~L~~L~l~~c~~l~~l~~------~~~l~~l~~~~~~~~~~~~~~~~~~i~ 911 (1199)
..++.|+.|++++|...+.+|.. + ++|+.|++.+|.-...+|. ++.++.+.+.++.....
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---------- 409 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK---------- 409 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE----------
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc----------
Confidence 66777888888888766566652 2 2777787777654333322 33455555444421100
Q ss_pred CCCCCCcccccccccccccEEEecCCCCCCCC----CCCCCCCcEEEccccccCCCCCc-ccccccceeeecCCC-CCcc
Q 000983 912 TSDNGQGQHLLLHSFQTLLEMKAINCPKLRGL----PQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCP-DGTL 985 (1199)
Q Consensus 912 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l----~~~~~l~~L~l~~~~~~~~~p~~-~~~~~L~~L~l~~~~-~~~~ 985 (1199)
....+..+++|+.|++.+|.-...+ ..+.+|+.|++++|...+.+|.. ..+++|++|++++|. ....
T Consensus 410 -------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 410 -------IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp -------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred -------cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 1112445677888888877433233 34557788888888877677664 456788888888887 3356
Q ss_pred ccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCC--
Q 000983 986 VRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG-- 1062 (1199)
Q Consensus 986 ~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~-- 1062 (1199)
+..+..+++|++|++++|.+.+.+|. +..+++|++|++++|.....+| ..+.++++|+.|++++|+....+|...
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 67777888888888888887777776 4778888888888887544566 467788888888888876554444211
Q ss_pred -------------------------------------------------------------------c--cCCcceEEec
Q 000983 1063 -------------------------------------------------------------------L--PTSLKCLIIA 1073 (1199)
Q Consensus 1063 -------------------------------------------------------------------~--~~sL~~L~l~ 1073 (1199)
+ .++|+.|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 0 1467888888
Q ss_pred cCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCC-CCCCCcCeEEccCCcchHHhhhcCCCCCCCCCcccccCceE
Q 000983 1074 SCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED-GLPENLQHLVIQNCPLLTQQCRDGEAEGPEWPKIKDIPDLE 1151 (1199)
Q Consensus 1074 ~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~~~~~~~~~g~~~~~i~~l~~l~ 1151 (1199)
+|.....+|. .++++++|+.|++++|..-..+|.. +-.++|++|++++|.. +|.++..+++++.++
T Consensus 641 ~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l----------~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 641 YNMLSGYIPK--EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL----------DGRIPQAMSALTMLT 707 (768)
T ss_dssp SSCCBSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC----------EECCCGGGGGCCCCS
T ss_pred CCcccccCCH--HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc----------cCcCChHHhCCCCCC
Confidence 8875567776 7888888888888888555577754 4457888888888876 666776666665554
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.5e-39 Score=383.06 Aligned_cols=285 Identities=19% Similarity=0.264 Sum_probs=228.1
Q ss_pred cccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccce-eEEEEecCCCChHHHHHHHHH
Q 000983 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
.|||+.++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997532 3789999999999999999999998788999997 899999999998888888776
Q ss_pred hcccCC---CC--------CCcHHHHHHHHHHHh---CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc
Q 000983 252 FHSKME---QS--------TSSISLLETRLLEFL---TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 252 ~~~~~~---~~--------~~~~~~l~~~l~~~l---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1199)
.+.... .. ..+.+.+...+++.| .+||+||||||||+. +.|+. ++ +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----FN---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----HH---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----hC---CCeEEEEeccCh
Confidence 543211 00 123455666777765 789999999999973 34443 33 789999999999
Q ss_pred hhhhhhcCCCceeCC------CCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCC
Q 000983 318 RVSQIMGIRSPYLLE------YLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYD 391 (1199)
Q Consensus 318 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~ 391 (1199)
.++..+.....|+++ +|+.+|||+||++.. +... .++..+| |+|+||||+++|+.|+.+.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~----------eeL~~eI---CgGLPLALkLaGs~Lr~k~ 341 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP----------QDLPREV---LTTNPRRLSIIAESIRDGL 341 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT----------TTHHHHH---CCCCHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH----------HHHHHHH---hCCCHHHHHHHHHHHhCCC
Confidence 998655444466777 999999999999984 3211 2233333 9999999999999999864
Q ss_pred -CHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhh-HHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCC
Q 000983 392 -DVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFL-KHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGG 469 (1199)
Q Consensus 392 -~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~ 469 (1199)
+.++|... ....+..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++|
T Consensus 342 ~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-------- 400 (1221)
T 1vt4_I 342 ATWDNWKHV-------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------- 400 (1221)
T ss_dssp SSHHHHHHC-------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC--------
T ss_pred CCHHHHhcC-------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC--------
Confidence 56788653 12468899999999999999 99999999999999999999999998876
Q ss_pred CCccHHHHHHHHHHHHHhccCcccccCCCcceEEehHHHHHHHH
Q 000983 470 RQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQ 513 (1199)
Q Consensus 470 ~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~ 513 (1199)
++.++.++++|+++|||+.. +...+|+|||++++++.
T Consensus 401 -----eedAe~~L~eLvdRSLLq~d--~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 401 -----KSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKV 437 (1221)
T ss_dssp -----SHHHHHHHHHHHTSSSSSBC--SSSSEEBCCCHHHHHHH
T ss_pred -----HHHHHHHHHHHHhhCCEEEe--CCCCEEEehHHHHHHhc
Confidence 12478899999999999984 23568999999999653
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.2e-38 Score=395.13 Aligned_cols=499 Identities=18% Similarity=0.154 Sum_probs=261.6
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhcccccccee
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 666 (1199)
+.++++|++|++++|.+....+ +..+++|++|+|++|.+...+..++++++|++|++++|.+.+.+|..+.++++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 4444555555555554442221 244555555555555554332225555555555555555444455555555555555
Q ss_pred ecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCC-CCCCCceeeCCccccccccccccccccccceeEE
Q 000983 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKEL-PYLTGKLHISKLENAVNGGEAKLSEKESLHKLVF 745 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l 745 (1199)
++++|.+. +.+|.. .+++|++|++.++. ..+..+..+..+ ++|+ .|.+.... ........+..+++|+.|++
T Consensus 253 ~Ls~n~l~--~~~~~~--~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~-~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 253 NISSNQFV--GPIPPL--PLKSLQYLSLAENK-FTGEIPDFLSGACDTLT-GLDLSGNH-FYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp ECCSSCCE--ESCCCC--CCTTCCEEECCSSE-EEESCCCCSCTTCTTCS-EEECCSSE-EEECCCGGGGGCTTCCEEEC
T ss_pred ECCCCccc--CccCcc--ccCCCCEEECcCCc-cCCccCHHHHhhcCcCC-EEECcCCc-CCCccchHHhcCCCccEEEC
Confidence 55555432 122222 44555555544322 111222222221 3333 22222111 01122223344444444444
Q ss_pred EecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCC-CCCcccccCccC-ceeEEEEeCccCcccc--CcCC-
Q 000983 746 EWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGN-SLPQWMRDGRLQ-NLVSLTLKGCTNCRIL--SLGQ- 820 (1199)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~-~L~~L~L~~~~~~~~~--~l~~- 820 (1199)
+.|......+ ...+..+++|+.|+++++... .+|.++ ..++ +|+.|++++|.+.... .+..
T Consensus 326 ~~n~l~~~ip------------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 326 SSNNFSGELP------------MDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp CSSEEEEECC------------HHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred CCCcccCcCC------------HHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 4432211000 011333444555555433322 344443 2233 4555555554443322 2222
Q ss_pred -cCCcCeEEecCCCCceecC-CCCCcccccccccCCCCCCCcCCC---cCCCcCeEEEecccccccCCCCCchheeeeec
Q 000983 821 -LSSLRVLNIKGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKKCCSLKALPVTPFLQFLILVD 895 (1199)
Q Consensus 821 -l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~ 895 (1199)
+++|++|++++|.....++ .+..++.|+.|++++|...+.+|. .+++|+.|++.+|.-...+|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p------------ 459 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP------------ 459 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC------------
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC------------
Confidence 4445555555544333333 233444455555555544333333 23344444444433221111
Q ss_pred cccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCCCCC----CCCCCCcEEEccccccCCCCCc-cccc
Q 000983 896 NLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLP----QIFAPQKLEISGCDLLSTLPNS-EFSQ 970 (1199)
Q Consensus 896 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~----~~~~l~~L~l~~~~~~~~~p~~-~~~~ 970 (1199)
..+..+++|+.|++.+|.-...+| .+.+|+.|++++|.....+|.. ..++
T Consensus 460 -------------------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 460 -------------------------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp -------------------------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred -------------------------HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 123345666666666665433333 3456667777777766666654 4456
Q ss_pred ccceeeecCCCC-CccccCCCCCCCCCEEeecCCCCCCCCCC--------------------------------------
Q 000983 971 RLQLLALEGCPD-GTLVRAIPETSSLNFLILSKISNLDSFPR-------------------------------------- 1011 (1199)
Q Consensus 971 ~L~~L~l~~~~~-~~~~~~l~~l~sL~~L~L~~n~~l~~~~~-------------------------------------- 1011 (1199)
+|++|++++|.. ...|..+..+++|+.|++++|.+.+.+|.
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 777777777763 35556666677777777777765544432
Q ss_pred ---------------------------------CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcC
Q 000983 1012 ---------------------------------WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETL 1058 (1199)
Q Consensus 1012 ---------------------------------~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l 1058 (1199)
+..+++|++|++++|.....+| ..++++++|+.|++++|.....+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--KEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--GGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC--HHHhccccCCEEeCcCCccCCCC
Confidence 3446789999999998555677 57899999999999999877677
Q ss_pred CCCC-ccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCcCeEEccCCcchH----Hhhhc
Q 000983 1059 PDEG-LPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPLLT----QQCRD 1133 (1199)
Q Consensus 1059 ~~~~-~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~----~~~~~ 1133 (1199)
|... -.++|+.|++++|.....+|. .+.++++|++|++++|+....+|..+...++....+.+||.|- ..|..
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~ 750 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCG--GGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCS
T ss_pred ChHHhCCCCCCEEECCCCcccCcCCh--HHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCC
Confidence 7542 238999999999986668887 8999999999999999777789987777777777788876542 27888
Q ss_pred CCCCCCCCCcccccCce
Q 000983 1134 GEAEGPEWPKIKDIPDL 1150 (1199)
Q Consensus 1134 ~~~~g~~~~~i~~l~~l 1150 (1199)
. .+++|++|+|.+.+
T Consensus 751 ~--~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 751 S--NADGYAHHQRSHHH 765 (768)
T ss_dssp C--C-------------
T ss_pred C--ccCCCCCCCCcccc
Confidence 8 89999999999875
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.5e-37 Score=413.96 Aligned_cols=314 Identities=23% Similarity=0.301 Sum_probs=248.1
Q ss_pred cCCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc-cccc-ceeEEEEecCCCC--hHH
Q 000983 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-REHF-ESRMWVCVTVDYD--LPR 244 (1199)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~~ 244 (1199)
....||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34579999999999999997653 45899999999999999999999997543 4445 5666999998654 334
Q ss_pred HHHHHHHhcccCCC----CCCcHHHHHHHHHHHhCCC--eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch
Q 000983 245 ILKGMIEFHSKMEQ----STSSISLLETRLLEFLTGQ--RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~----~~~~~~~l~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1199)
.+..++..+..... ...+.+.+...++..+.++ |+||||||||+. ..| ....+||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~-------~~~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVL-------KAFDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHH-------TTTCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHH-------HhhcCCCEEEEEcCCHH
Confidence 45666666654322 2467788899999999887 999999999864 222 22368999999999999
Q ss_pred hhhh-hcCCCceeCCC-CChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHH
Q 000983 319 VSQI-MGIRSPYLLEY-LPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKW 396 (1199)
Q Consensus 319 v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w 396 (1199)
|+.. ++....+++++ |+++||++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+. ..|
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--------~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--------KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--------STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--------hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9854 45567899996 99999999999988532 234456799999999999999999999998754 357
Q ss_pred HHHHhhhccccc---cCCCC--CCCcccchhhcccCCChhhHHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCCCC
Q 000983 397 RKILSSDIWELE---EGSSN--GPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQ 471 (1199)
Q Consensus 397 ~~~l~~~~~~~~---~~~~~--~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~ 471 (1199)
...++....... ..... ...+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 766654322111 00001 12478899999999999999999999999999999999999999543
Q ss_pred ccHHHHHHHHHHHHHhccCcccccCCCcceEEehHHHHHHHHHhcCCC
Q 000983 472 EREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVSSPY 519 (1199)
Q Consensus 472 ~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~i~~~~ 519 (1199)
++.++.++++|+++||++....++..+|+|||++|++++..+.++
T Consensus 408 ---~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ---TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 567899999999999999876555567999999999999987665
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-35 Score=373.36 Aligned_cols=544 Identities=18% Similarity=0.141 Sum_probs=372.8
Q ss_pred CCCceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCc-ccccCc
Q 000983 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELK 614 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~ 614 (1199)
.++.++++.+..+.+..+....+..+++|++|.+. .+.+....+..|.++++|++|+|++|.++.+|. .|++++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-----FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC-----SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECC-----CCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 45678999999888888777778889999999887 345556666778889999999999999998886 589999
Q ss_pred cccEEeccCCCccccc-hhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCC-Cc--CCccccC
Q 000983 615 LLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPA-GI--GKLTNLH 690 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~-~i--~~l~~L~ 690 (1199)
+|++|+|++|.+..+| ..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+. .++. .+ ..+++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ---ALKSEELDIFANSSLK 174 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC---CBCHHHHGGGTTCEES
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc---ccCHHHhhcccccccc
Confidence 9999999999998876 57899999999999999877777778889999999999988654 2332 22 3557888
Q ss_pred ccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccc--cccccccccceeEEEecCCCCCCCCCCCCccchHHHh
Q 000983 691 NLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGE--AKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL 768 (1199)
Q Consensus 691 ~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 768 (1199)
+|++.++ ...+..+..+..+.+++ .+.+........... .......+|+.|+++++......+
T Consensus 175 ~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~------------- 239 (680)
T 1ziw_A 175 KLELSSN-QIKEFSPGCFHAIGRLF-GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN------------- 239 (680)
T ss_dssp EEECTTC-CCCCBCTTGGGGSSEEC-EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-------------
T ss_pred EEECCCC-cccccChhhhhhhhhhh-hhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-------------
Confidence 8888764 34444455555665555 343333221110000 000123678888887765442221
Q ss_pred hccCCC--CCCcEEEEeecCCCCCC-cccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCce-----ec
Q 000983 769 EDLQPH--PNLEELQIFNYFGNSLP-QWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELE-----KW 838 (1199)
Q Consensus 769 ~~l~~~--~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~-----~~ 838 (1199)
..+..+ ++|+.|+++++....++ .++ ..+++|+.|++++|.+.... .++.+++|++|++++|.... .+
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred hHhhccCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 122222 35888888876655554 445 56888888888888776655 67888888888888764321 11
Q ss_pred C-----CCCCcccccccccCCCCCCCcCCC---cCCCcCeEEEeccc-ccccCCCC-------Cchheeeeeccccccch
Q 000983 839 P-----NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKKCC-SLKALPVT-------PFLQFLILVDNLELENW 902 (1199)
Q Consensus 839 ~-----~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~-~l~~l~~~-------~~l~~l~~~~~~~~~~~ 902 (1199)
+ .+..++.|+.+++++|......+. .+++|+.|++.+|. .+..++.. +.++.+.+.++. +..
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~- 395 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISK- 395 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCE-
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCe-
Confidence 2 345677888888888876554443 45677788877764 12222211 223333333321 100
Q ss_pred hccccccccCCCCCCcccccccccccccEEEecCCCCCC-----CCCCCCCCCcEEEccccccCCCCCc-ccccccceee
Q 000983 903 NERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLR-----GLPQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLA 976 (1199)
Q Consensus 903 ~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~l~~~~~l~~L~l~~~~~~~~~p~~-~~~~~L~~L~ 976 (1199)
.....+..+++|+.|+++++.-.. .+..+.+++.|++++|......+.. ..+++|+.|+
T Consensus 396 ---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 396 ---------------IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp ---------------ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred ---------------EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 011234567788888888876432 2345667888888888755444433 4468899999
Q ss_pred ecCCCC---CccccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEccCCCCCCCccc-------ccCCCCCCcc
Q 000983 977 LEGCPD---GTLVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGE-------GALQSLTSLN 1045 (1199)
Q Consensus 977 l~~~~~---~~~~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~-------~~l~~l~~L~ 1045 (1199)
+++|.. ...+..+..+++|+.|++++|.+....+. +..+++|++|++++|. ++.++.. ..+.++++|+
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCC
Confidence 988873 45667788888999999999887665544 5788899999999887 5544211 2377888999
Q ss_pred eEEecCCCCCCcCCCCCcc--CCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCCC---CCCCcCeEE
Q 000983 1046 LLSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDG---LPENLQHLV 1120 (1199)
Q Consensus 1046 ~L~l~~c~~l~~l~~~~~~--~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~---l~~sL~~L~ 1120 (1199)
+|++++|. ++.+|...+. ++|+.|++++|. ++.+|. ..+.++++|++|++++| .++.++... ..++|+.|+
T Consensus 540 ~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 540 ILNLESNG-FDEIPVEVFKDLFELKIIDLGLNN-LNTLPA-SVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEE
T ss_pred EEECCCCC-CCCCCHHHcccccCcceeECCCCC-CCcCCH-hHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEE
Confidence 99999875 6677765443 789999998875 777776 35678899999999998 777777542 247899999
Q ss_pred ccCCcc
Q 000983 1121 IQNCPL 1126 (1199)
Q Consensus 1121 i~~c~~ 1126 (1199)
+++||.
T Consensus 616 l~~N~~ 621 (680)
T 1ziw_A 616 MRFNPF 621 (680)
T ss_dssp CTTCCC
T ss_pred ccCCCc
Confidence 998886
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-34 Score=358.34 Aligned_cols=497 Identities=16% Similarity=0.130 Sum_probs=287.1
Q ss_pred CCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccEEeccCCCcccc-chhhcccCcc
Q 000983 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNL 639 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L 639 (1199)
+.++.|.+. .+.+..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|
T Consensus 32 ~~l~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLS-----FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECC-----CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 445555554 2333333444455555555555555555544 33455555555555555555544 4455555555
Q ss_pred cEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCC---
Q 000983 640 QTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG--- 716 (1199)
Q Consensus 640 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~--- 716 (1199)
++|++++|.+....|..++++++|++|++++|.+.. ..+|..++++++|++|+++++. ..+..+..++.+.+++.
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC-CCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCC
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccc-eechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccc
Confidence 555555555333333455555555555555554421 1345555555555555555432 22222222222222211
Q ss_pred ceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCC------C
Q 000983 717 KLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNS------L 790 (1199)
Q Consensus 717 ~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~ 790 (1199)
.+.+.. +.............+|+.|++++|... .......+..+++|+.+.+....... +
T Consensus 185 ~L~l~~--n~l~~~~~~~~~~~~L~~L~L~~n~~~------------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 185 SLDMSL--NPIDFIQDQAFQGIKLHELTLRGNFNS------------SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp EEECTT--CCCCEECTTTTTTCEEEEEEEESCCSC------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred eeeccC--CCcceeCcccccCceeeeeeccCCccc------------hhHHHHHhccccccccccccccccccCCccccc
Confidence 222211 111111111122236777777766432 12333445566677776665221111 1
Q ss_pred Cc-ccccCccCceeEEEEe-CccCcccc-CcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCC-cCC
Q 000983 791 PQ-WMRDGRLQNLVSLTLK-GCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE-CMP 866 (1199)
Q Consensus 791 p~-~~~~~~l~~L~~L~L~-~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~ 866 (1199)
+. ++..-.--.++.+++. .+...... .+..+++|+.|++++|.. ..++.+..++.|+.+++++|.. +.+|. .++
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~ 328 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLP 328 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCCCCCCS
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccccCCCC
Confidence 11 1100011245555653 33333333 566677777777777654 3444566667777777777765 55554 566
Q ss_pred CcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCC------
Q 000983 867 NLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKL------ 940 (1199)
Q Consensus 867 ~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L------ 940 (1199)
+|+.|++.+|..+..++ ...+++|+.|+++++.--
T Consensus 329 ~L~~L~l~~n~~~~~~~---------------------------------------~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISFK---------------------------------------KVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp SCCEEEEESCSSCEECC---------------------------------------CCCCTTCCEEECCSSCEEEEEECC
T ss_pred ccceeeccCCcCccchh---------------------------------------hccCCCCCEEECcCCccCCCcchh
Confidence 77777777764433221 123445555555554311
Q ss_pred CCCCCCCCCCcEEEccccccCCCCCcccccccceeeecCCCCCcc-c-cCCCCCCCCCEEeecCCCCCCCCCC-CCCCCc
Q 000983 941 RGLPQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTL-V-RAIPETSSLNFLILSKISNLDSFPR-WPNLPG 1017 (1199)
Q Consensus 941 ~~l~~~~~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~-~-~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~ 1017 (1199)
..+..+..++.|++++|......+....+++|++|++++|..... + ..+..+++|++|++++|.+....|. +..+++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 011234556778888876443222335578999999999983333 3 5788899999999999998877765 688999
Q ss_pred cceEEEccCCCCCC-CcccccCCCCCCcceEEecCCCCCCcCCCCCc--cCCcceEEeccCCCCcccCCCCCCCCCCCCC
Q 000983 1018 LKALYIRDCKDLVS-LSGEGALQSLTSLNLLSIRGCPKLETLPDEGL--PTSLKCLIIASCSGLKSLGPRGTLKSLNSLK 1094 (1199)
Q Consensus 1018 L~~L~l~~c~~L~~-l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~ 1094 (1199)
|++|++++|..... +| ..+.++++|++|++++|. ++.++...+ .++|++|++++|......|. .+.++++|+
T Consensus 450 L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~ 524 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLS--NVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSS--HYNQLYSLS 524 (606)
T ss_dssp CCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCEEGG--GTTTCTTCC
T ss_pred CCEEECCCCcCCCcchH--HhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCCcCCCcCHH--HccCCCcCC
Confidence 99999999983322 34 578899999999999986 444443333 28999999999974444465 789999999
Q ss_pred ceeecCCCCCCCCCCC--CCCCCcCeEEccCCcc
Q 000983 1095 DFYIEDCPLLQSFPED--GLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1095 ~L~i~~c~~l~~lp~~--~l~~sL~~L~i~~c~~ 1126 (1199)
+|++++| .++.+|.. .++++|++|++++||.
T Consensus 525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 9999999 58888875 3445799999999876
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-32 Score=345.11 Aligned_cols=541 Identities=16% Similarity=0.140 Sum_probs=383.2
Q ss_pred EEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccEEec
Q 000983 543 VSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDL 621 (1199)
Q Consensus 543 lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L 621 (1199)
+......+..++.. -.++++.|.+. .+.+..+++..|.++++|++|+|++|.+..+ |..|+++++|++|+|
T Consensus 9 ~~cs~~~L~~ip~~---~~~~l~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 9 ADCSHLKLTQVPDD---LPTNITVLNLT-----HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp EECCSSCCSSCCSC---SCTTCSEEECC-----SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred eECCCCCccccccc---cCCCCcEEECC-----CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC
Confidence 33444445554421 12689999987 4556666677899999999999999999865 677999999999999
Q ss_pred cCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEeccc
Q 000983 622 SRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSK 700 (1199)
Q Consensus 622 ~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 700 (1199)
++|.+..+|. .|+++++|++|++++|.+....|..+.++++|++|++++|.+. ...|..++++++|++|++.++. .
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~-l 157 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS--STKLGTQVQLENLQELLLSNNK-I 157 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS--CCCCCSSSCCTTCCEEECCSSC-C
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc--ccCchhhcccccCCEEEccCCc-c
Confidence 9999999987 6999999999999999865555578999999999999999765 3356778999999999998753 3
Q ss_pred CcCChhhhc--CCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCc
Q 000983 701 SGYRIEELK--ELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLE 778 (1199)
Q Consensus 701 ~~~~~~~l~--~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 778 (1199)
.+.....+. .+++|+ .+.+... .........+..+.+|+.|.+..+... ......+...+ ..++|+
T Consensus 158 ~~~~~~~~~~~~~~~L~-~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~---------~~~~~~~~~~l-~~~~L~ 225 (680)
T 1ziw_A 158 QALKSEELDIFANSSLK-KLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLG---------PSLTEKLCLEL-ANTSIR 225 (680)
T ss_dssp CCBCHHHHGGGTTCEES-EEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCH---------HHHHHHHHHHH-TTSCCC
T ss_pred cccCHHHhhcccccccc-EEECCCC-cccccChhhhhhhhhhhhhhccccccC---------hhhHHHHHHHh-hhcccc
Confidence 344344333 334454 4444332 112233344566777777776544321 01111222222 347899
Q ss_pred EEEEeecCCCCC-CcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecC-CCCCcccccccccCC
Q 000983 779 ELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLKISN 854 (1199)
Q Consensus 779 ~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~ 854 (1199)
.|+++++..... |.++.....++|+.|++++|.+.... .++.+++|++|++++|......+ .+..++.|+.+++++
T Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred EEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 999997765443 55553212245999999999887765 68899999999999997776655 567889999999987
Q ss_pred CCCCC-----cCC-------CcCCCcCeEEEeccccccc----CCCCCchheeeeecccc-ccchhccccccccCCCCCC
Q 000983 855 CPRLN-----ELP-------ECMPNLTVMKIKKCCSLKA----LPVTPFLQFLILVDNLE-LENWNERCLRVIPTSDNGQ 917 (1199)
Q Consensus 855 ~~~l~-----~~~-------~~~~~L~~L~l~~c~~l~~----l~~~~~l~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~ 917 (1199)
|.... .+| ..+++|+.|++.++.--.. +..++.++++.+.++.. ......
T Consensus 306 ~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~------------- 372 (680)
T 1ziw_A 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN------------- 372 (680)
T ss_dssp CBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT-------------
T ss_pred hhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcch-------------
Confidence 64332 222 1568899999888653222 23355666666654421 000000
Q ss_pred cccccccccccccEEEecCCCCCC----CCCCCCCCCcEEEccccccCCCCCc--ccccccceeeecCCC-CCccccCCC
Q 000983 918 GQHLLLHSFQTLLEMKAINCPKLR----GLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCP-DGTLVRAIP 990 (1199)
Q Consensus 918 ~~~~~~~~~~~L~~L~l~~c~~L~----~l~~~~~l~~L~l~~~~~~~~~p~~--~~~~~L~~L~l~~~~-~~~~~~~l~ 990 (1199)
........+.|+.|++.+|.-.. .+..+.+++.|++++|.....+|.. ..+++|++|++++|. ....+..+.
T Consensus 373 -~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 451 (680)
T 1ziw_A 373 -ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451 (680)
T ss_dssp -TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred -hhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh
Confidence 00000112578899998875332 2335568899999999877666643 456899999999998 333456788
Q ss_pred CCCCCCEEeecCCCCC--CCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCC-----
Q 000983 991 ETSSLNFLILSKISNL--DSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG----- 1062 (1199)
Q Consensus 991 ~l~sL~~L~L~~n~~l--~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~----- 1062 (1199)
.+++|+.|++++|... ..+|. +..+++|++|++++|. ++.++. ..+.++++|++|++++|. ++.++...
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANIND-DMLEGLEKLEILDLQHNN-LARLWKHANPGGP 528 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CGGGGSTTSTTSC
T ss_pred cCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCCh-hhhccccccCEEeCCCCC-ccccchhhccCCc
Confidence 8999999999999864 34454 6889999999999998 666664 578999999999999986 55443211
Q ss_pred ---c--cCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCCCC--CCCcCeEEccCCcc
Q 000983 1063 ---L--PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGL--PENLQHLVIQNCPL 1126 (1199)
Q Consensus 1063 ---~--~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~l--~~sL~~L~i~~c~~ 1126 (1199)
+ .++|+.|++++|. ++.+|. ..+.++++|++|++++| .++.+|...+ .++|++|++++|..
T Consensus 529 ~~~~~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNG-FDEIPV-EVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp CCTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred chhhcCCCCCCEEECCCCC-CCCCCH-HHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 1 2799999999985 778876 35899999999999998 7899987643 48999999999954
No 9
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=346.28 Aligned_cols=308 Identities=22% Similarity=0.313 Sum_probs=234.6
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc-ccccc-eeEEEEecCCCChHHHHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-REHFE-SRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~~~~~~~~~~ 247 (1199)
...||||+.+++++.++|.... ...++|+|+||||+||||||+++|++.++ +.+|+ .++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3569999999999999997542 45789999999999999999999997655 78894 7899999876 3344444
Q ss_pred HH---HHhcccC----CCCCCcHHHHHHHHHHHhCC--CeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch
Q 000983 248 GM---IEFHSKM----EQSTSSISLLETRLLEFLTG--QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1199)
Q Consensus 248 ~i---~~~~~~~----~~~~~~~~~l~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1199)
.+ +..++.. .....+.+.+...+.+.+.+ +++||||||||+. +.+ ....+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l----~~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL----KAFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH----HTTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH----HHhcCCCeEEEECCCcH
Confidence 43 3333321 11245667777788887766 7899999999863 222 22367899999999998
Q ss_pred hhhhhcCCCceeC---CCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHH
Q 000983 319 VSQIMGIRSPYLL---EYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNK 395 (1199)
Q Consensus 319 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~ 395 (1199)
++..+. ...+++ ++|+.+|+++||...++.. .+...+.+++|+++|+|+||||+.+|+.++.+. ..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~ 337 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK--------KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TC
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC--------cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hh
Confidence 876543 334444 5899999999999998642 122346788999999999999999999998753 36
Q ss_pred HHHHHhhhccccc----cC-CCCCCCcccchhhcccCCChhhHHHHHHhccCCCCcccCHHHHHHHHHHccccccCCCCC
Q 000983 396 WRKILSSDIWELE----EG-SSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGR 470 (1199)
Q Consensus 396 w~~~l~~~~~~~~----~~-~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~ 470 (1199)
|...++....... .. ......+..++.+||+.||++.|.||+++|+||+++.|+.+.++..|.++
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~---------- 407 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---------- 407 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC----------
Confidence 8777654322111 00 01123577899999999999999999999999999999999999999532
Q ss_pred CccHHHHHHHHHHHHHhccCcccccCCCcceEEehHHHHHHHHHhc
Q 000983 471 QEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVS 516 (1199)
Q Consensus 471 ~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~i~ 516 (1199)
.+.+..++++|+++|||+....+...+|+||+++|++++...
T Consensus 408 ----~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ----TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ----HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 445788999999999998765445568999999999998874
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-32 Score=338.49 Aligned_cols=498 Identities=17% Similarity=0.145 Sum_probs=307.2
Q ss_pred CccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccEEeccCCCcccc-chhhcccCccc
Q 000983 563 KLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQ 640 (1199)
Q Consensus 563 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~ 640 (1199)
.++.|.+. .+.+..+.+..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.+..+ |..|+++++|+
T Consensus 34 ~l~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 34 STECLEFS-----FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TCCEEECT-----TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred cCcEEEcc-----CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 56666665 3445555556677777777777777777644 56677777777777777777655 55777777777
Q ss_pred EEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceee
Q 000983 641 TLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHI 720 (1199)
Q Consensus 641 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l 720 (1199)
+|++++|.+....|..+.++++|++|++++|.+..+ ..|..+ .+++|++|++.++ ...+.....+..+++++ .+.+
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~-~l~L 184 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI-KLPKGF-PTEKLKVLDFQNN-AIHYLSKEDMSSLQQAT-NLSL 184 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC-CCCTTC-CCTTCCEEECCSS-CCCEECHHHHHTTTTCC-SEEE
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCccccc-Cccccc-CCcccCEEEcccC-cccccChhhhhhhcccc-eeEE
Confidence 777777774444456677777777777777755321 223333 3777777777653 33344445556666555 2222
Q ss_pred CCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecC---CCCCCcccccC
Q 000983 721 SKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYF---GNSLPQWMRDG 797 (1199)
Q Consensus 721 ~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~p~~~~~~ 797 (1199)
.--.+..............|+.|+++++.. ....+..+... .+..+.+.... ...++.... .
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~-------------~~~~~~~l~~~-~l~~l~~~~~~~~~~~~i~~~~~-~ 249 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQN-------------LLVIFKGLKNS-TIQSLWLGTFEDMDDEDISPAVF-E 249 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSC-------------HHHHHHHTTTC-EEEEEECCCCTTSCCCCCCGGGG-G
T ss_pred ecCCCccCccChhHhhhccccccccCCchh-------------HHHHhhhcccc-chhheechhhccccccccChhHh-c
Confidence 221222222222222234566666654421 11111222111 12222222111 111111111 1
Q ss_pred cc--CceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCC---cCCCcCe
Q 000983 798 RL--QNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE---CMPNLTV 870 (1199)
Q Consensus 798 ~l--~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~ 870 (1199)
.+ .+|+.|++++|.+.... .++.+++|++|++++|.....+..+..++.|+.|++++|......|. .+++|+.
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 11 26777777777666655 46777777777777775544334556677777777777765543332 5667777
Q ss_pred EEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCC------CCC
Q 000983 871 MKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLR------GLP 944 (1199)
Q Consensus 871 L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~------~l~ 944 (1199)
|++.+|.....+|. ..+..+++|+.|+++++.--. .+.
T Consensus 330 L~l~~n~~~~~~~~------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 330 LSIKGNTKRLELGT------------------------------------GCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp EECCSCSSCCBCCS------------------------------------STTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred EECCCCCcccccch------------------------------------hhhhccCcCCEEECCCCccccccCcchhcc
Confidence 77766543222221 012234556666666543211 233
Q ss_pred CCCCCCcEEEccccccCCCCCc-ccccccceeeecCCCCC-c-cccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccce
Q 000983 945 QIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDG-T-LVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKA 1020 (1199)
Q Consensus 945 ~~~~l~~L~l~~~~~~~~~p~~-~~~~~L~~L~l~~~~~~-~-~~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~ 1020 (1199)
.+.+++.|++++|......|.. ..+++|++|++++|... . .+..+..+++|+.|++++|.+....|. +..+++|++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 4556788888888765554543 45689999999999832 2 234478889999999999988776665 588999999
Q ss_pred EEEccCCCCCC--CcccccCCCCCCcceEEecCCCCCCcCCCCCcc--CCcceEEeccCCCCcccCCCCCCCCCCCCCce
Q 000983 1021 LYIRDCKDLVS--LSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDF 1096 (1199)
Q Consensus 1021 L~l~~c~~L~~--l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L 1096 (1199)
|++++|. ++. ++....+..+++|++|++++|. ++.++...+. ++|++|++++|......|. .+.++++| .|
T Consensus 454 L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L-~L 528 (606)
T 3t6q_A 454 LNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE--ALSHLKGI-YL 528 (606)
T ss_dssp EECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCGGGGG--GGTTCCSC-EE
T ss_pred EECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCCccCcCChh--HhCccccc-EE
Confidence 9999998 332 2222468889999999999986 4454433332 8999999999975555555 78899999 99
Q ss_pred eecCCCCCCCCCCCC--CCCCcCeEEccCCcc
Q 000983 1097 YIEDCPLLQSFPEDG--LPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1097 ~i~~c~~l~~lp~~~--l~~sL~~L~i~~c~~ 1126 (1199)
++++| .++.++... ..++|+.|++++||.
T Consensus 529 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 529 NLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp ECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 99999 666766542 237899999999886
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-32 Score=335.98 Aligned_cols=470 Identities=18% Similarity=0.096 Sum_probs=345.0
Q ss_pred CcccEEecCCCCCcccCc-ccccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
+.|++|+|++|.++.+|. .|.++++|++|+|++|.++.+ |..|+++++|++|++++|.+....|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 789999999999997765 899999999999999999987 568999999999999999966666999999999999999
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccc----eeE
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLH----KLV 744 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~----~L~ 744 (1199)
++|.+..+ .|..++++++|++|++.++.......+..++++++|+ .|.+.... ........+..+.+|+ .|+
T Consensus 112 ~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 112 VETKLASL--ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNY-IQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp TTSCCCCS--SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC-EEECCSSC-CCEECTTTTHHHHHCTTCCCEEE
T ss_pred cCCccccc--cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC-EEEccCCc-ceecChhhhhhhhccccccceee
Confidence 99976432 2366999999999999886544334567788888888 66655422 1122233344555444 688
Q ss_pred EEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCC--CCCcccccCccCceeEEEEeCccCcccc------
Q 000983 745 FEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGN--SLPQWMRDGRLQNLVSLTLKGCTNCRIL------ 816 (1199)
Q Consensus 745 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~L~~~~~~~~~------ 816 (1199)
++.|......+ ......+|+.|+++++... ..|.++ ..+++|+.+++.........
T Consensus 188 l~~n~l~~~~~--------------~~~~~~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 188 MSLNPIDFIQD--------------QAFQGIKLHELTLRGNFNSSNIMKTCL--QNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp CTTCCCCEECT--------------TTTTTCEEEEEEEESCCSCHHHHHHHH--HTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred ccCCCcceeCc--------------ccccCceeeeeeccCCccchhHHHHHh--ccccccccccccccccccCCcccccC
Confidence 87775542211 2223348999999977543 456666 56889998888654332211
Q ss_pred --CcCCcC--CcCeEEe-cCCCCceecCCCCCcccccccccCCCCCCCcCCC--cCCCcCeEEEecccccccCCCCCchh
Q 000983 817 --SLGQLS--SLRVLNI-KGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE--CMPNLTVMKIKKCCSLKALPVTPFLQ 889 (1199)
Q Consensus 817 --~l~~l~--~L~~L~L-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~l~ 889 (1199)
.+..+. .++.+.+ ..+.....++.+..++.++.+++++|.. ..+|. .+++|+.|++.+|.- ..+|.
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp~----- 324 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFPT----- 324 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCCC-----
T ss_pred hHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-ccccc-----
Confidence 112222 4556666 3444444555677788999999999875 44443 556889999988764 44442
Q ss_pred eeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCCC--CCCCCCCCcEEEccccccCC--CCC
Q 000983 890 FLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRG--LPQIFAPQKLEISGCDLLST--LPN 965 (1199)
Q Consensus 890 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--l~~~~~l~~L~l~~~~~~~~--~p~ 965 (1199)
. .+++|+.|++.+|..+.. +..+++++.|++++|..... ++.
T Consensus 325 ---------------------------------~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 370 (606)
T 3vq2_A 325 ---------------------------------L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY 370 (606)
T ss_dssp ---------------------------------C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCH
T ss_pred ---------------------------------C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhh
Confidence 1 357888888888865543 33567889999999976543 233
Q ss_pred c-ccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCC--CCCCCCccceEEEccCCCCCCCcccccCCCCC
Q 000983 966 S-EFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFP--RWPNLPGLKALYIRDCKDLVSLSGEGALQSLT 1042 (1199)
Q Consensus 966 ~-~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~--~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~ 1042 (1199)
. ..+++|++|++++|.....+..+..+++|+.|++++|.+....| .+..+++|++|++++|......+ ..+.+++
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~ 448 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD--GIFLGLT 448 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT--TTTTTCT
T ss_pred hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch--hhhcCCC
Confidence 2 45689999999999966677888999999999999998887766 46899999999999998444344 5789999
Q ss_pred CcceEEecCCCCCCc-CCCC-CccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCC-CCC-CCCCCcCe
Q 000983 1043 SLNLLSIRGCPKLET-LPDE-GLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSF-PED-GLPENLQH 1118 (1199)
Q Consensus 1043 ~L~~L~l~~c~~l~~-l~~~-~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~l-p~~-~l~~sL~~ 1118 (1199)
+|++|++++|..... +|.. .-.++|++|++++|......|. .+.++++|++|++++| .++.+ |.. ...++|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG--VFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCE
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh--hhcccccCCEEECCCC-cCCCcCHHHccCCCcCCE
Confidence 999999999874442 3432 2238999999999974444444 7999999999999999 56665 432 33479999
Q ss_pred EEccCCcc
Q 000983 1119 LVIQNCPL 1126 (1199)
Q Consensus 1119 L~i~~c~~ 1126 (1199)
|++++|..
T Consensus 526 L~l~~N~l 533 (606)
T 3vq2_A 526 LDCSFNRI 533 (606)
T ss_dssp EECTTSCC
T ss_pred EECCCCcC
Confidence 99999964
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-32 Score=335.05 Aligned_cols=505 Identities=15% Similarity=0.094 Sum_probs=326.7
Q ss_pred CCCceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCc
Q 000983 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELK 614 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~ 614 (1199)
.+..++++.+..+.+..+....+..+++|++|.+. .+.+..+.+..|.++++|++|+|++|.+..+ |..|++++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT-----RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECT-----TCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECC-----CCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 45688999999999988777778999999999998 4556666778899999999999999999855 77899999
Q ss_pred cccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccC--c
Q 000983 615 LLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLH--N 691 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~--~ 691 (1199)
+|++|+|++|.++.+ |..++++++|++|++++|.+...-+..+..+++|++|++++|.+..+ .|..++.+++|+ .
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLS 183 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE--CHHHHHTTTTCCSEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc--ChhhhhhhcccceeE
Confidence 999999999999988 67899999999999999985542223445599999999999976532 345578888888 5
Q ss_pred cCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhcc
Q 000983 692 LHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDL 771 (1199)
Q Consensus 692 L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 771 (1199)
|++.++. ..+.....+.. ..++ .+.+...... ...+..+..+....+.......... .......+..+
T Consensus 184 L~l~~n~-l~~~~~~~~~~-~~L~-~L~l~~~~~~----~~~~~~l~~~~l~~l~~~~~~~~~~-----~~i~~~~~~~l 251 (606)
T 3t6q_A 184 LNLNGND-IAGIEPGAFDS-AVFQ-SLNFGGTQNL----LVIFKGLKNSTIQSLWLGTFEDMDD-----EDISPAVFEGL 251 (606)
T ss_dssp EECTTCC-CCEECTTTTTT-CEEE-EEECTTCSCH----HHHHHHTTTCEEEEEECCCCTTSCC-----CCCCGGGGGGG
T ss_pred EecCCCc-cCccChhHhhh-cccc-ccccCCchhH----HHHhhhccccchhheechhhccccc-----cccChhHhchh
Confidence 5555432 22222222211 2222 2233222111 1112222223322332221111000 00111122222
Q ss_pred CCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCceecC-CCCCcccccc
Q 000983 772 QPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGR 849 (1199)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~ 849 (1199)
.+. +|+.|+++++....++.... ..+++|+.|++++|.+.... .++.+++|++|++++|......+ .+..++.|+.
T Consensus 252 ~~~-~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 252 CEM-SVESINLQKHYFFNISSNTF-HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGS-EEEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hcC-ceeEEEeecCccCccCHHHh-ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 221 56666666555555544321 44666666666666655444 55666666666666665443322 3455566666
Q ss_pred cccCCCCCCCcCCC----cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccc
Q 000983 850 LKISNCPRLNELPE----CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHS 925 (1199)
Q Consensus 850 L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 925 (1199)
|++++|.....++. .+++|+.|++.++.--. ++. ....+..
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~----------------------------------~~~~~~~ 374 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDC----------------------------------CNLQLRN 374 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEE----------------------------------STTTTTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCcccc-ccC----------------------------------cchhccc
Confidence 66666655444433 45666666666543211 000 0011234
Q ss_pred cccccEEEecCCCCCC----CCCCCCCCCcEEEccccccCCCCCc--ccccccceeeecCCCC-CccccCCCCCCCCCEE
Q 000983 926 FQTLLEMKAINCPKLR----GLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCPD-GTLVRAIPETSSLNFL 998 (1199)
Q Consensus 926 ~~~L~~L~l~~c~~L~----~l~~~~~l~~L~l~~~~~~~~~p~~--~~~~~L~~L~l~~~~~-~~~~~~l~~l~sL~~L 998 (1199)
+++|+.|++.+|.-.. .+..+.+++.|++++|......+.. ..+++|++|++++|.. ...+..+..+++|++|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 5666666666654221 2334567788899988876655443 4568999999999984 4456678889999999
Q ss_pred eecCCCCCCC-CC---CCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCcc--CCcceEEe
Q 000983 999 ILSKISNLDS-FP---RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLII 1072 (1199)
Q Consensus 999 ~L~~n~~l~~-~~---~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~l 1072 (1199)
++++|.+.+. ++ .+..+++|++|++++|. ++.+++ ..+.++++|++|++++|. +..++...+. ++| .|++
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEEC
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCc-cCccCh-hhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEEC
Confidence 9999987652 22 25789999999999997 555543 578999999999999986 4444333333 778 9999
Q ss_pred ccCCCCcccCCCCCCCCCCCCCceeecCCC
Q 000983 1073 ASCSGLKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1199)
Q Consensus 1073 ~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~ 1102 (1199)
++|. ++.+++ ..+..+++|++|++++||
T Consensus 531 ~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 531 ASNH-ISIILP-SLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CSSC-CCCCCG-GGHHHHHTSSEEECTTCC
T ss_pred cCCc-ccccCH-hhcccCCCCCEEeCCCCC
Confidence 9987 555554 267889999999999996
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=333.24 Aligned_cols=505 Identities=17% Similarity=0.104 Sum_probs=280.7
Q ss_pred CCCceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCc
Q 000983 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELK 614 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~ 614 (1199)
.++.++++.+..+.+..+....+..+++|+.|.+.. ......+.+..|.++++|++|+|++|.+..+ |..|+++.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~----n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS----QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT----TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC----CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 345677777777766665555566777777777651 1122233345566777777777777777644 66677777
Q ss_pred cccEEeccCCCccc-cchh--hcccCcccEEecCCCCcccccc-hhhccccccceeecccccccccccCCCCcCCc--cc
Q 000983 615 LLRYLDLSRTEIKV-LPNS--ICNLYNLQTLKLIGCIWIMELP-KDLANLVKLRNLELEEMFWFKCSTLPAGIGKL--TN 688 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l--~~ 688 (1199)
+|++|+|++|.+.. +|.. +++|++|++|++++|.+.+..| ..++++++|++|++++|.+.. ..|..++.+ ++
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~--~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPLQGKT 175 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC--CCSGGGHHHHHCS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe--eCHHHcccccCCc
Confidence 77777777777664 4443 6777777777777776444332 456777777777777765532 234455555 56
Q ss_pred cCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHh
Q 000983 689 LHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL 768 (1199)
Q Consensus 689 L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 768 (1199)
|+.|++..+.. .+.....+..+.+ .+.. ..|+.|+++.|......+. . +
T Consensus 176 L~~L~L~~n~l-~~~~~~~~~~~~~-------------------~~~~-~~L~~L~Ls~n~l~~~~~~---------~-~ 224 (844)
T 3j0a_A 176 LSFFSLAANSL-YSRVSVDWGKCMN-------------------PFRN-MVLEILDVSGNGWTVDITG---------N-F 224 (844)
T ss_dssp SCCCEECCSBS-CCCCCCCCCSSSC-------------------TTTT-CCBSEEBCSSCCSSTTTTS---------G-G
T ss_pred cceEECCCCcc-ccccccchhhcCC-------------------cccc-CceeEEecCCCcCchhHHH---------H-H
Confidence 66666655322 2211111222111 0111 1355555554433211110 0 0
Q ss_pred hccCCCCCCcEEEEeecCCC----------CCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCce
Q 000983 769 EDLQPHPNLEELQIFNYFGN----------SLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELE 836 (1199)
Q Consensus 769 ~~l~~~~~L~~L~l~~~~~~----------~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~ 836 (1199)
........+..|.+..+... ..+..+.....++|+.|++++|.+.... .++.+++|+.|+|++|....
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 01111233444444311100 0001111011245555555555544433 34555555555555554443
Q ss_pred ecC-CCCCcccccccccCCCCCCCcCCC---cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccC
Q 000983 837 KWP-NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPT 912 (1199)
Q Consensus 837 ~~~-~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~ 912 (1199)
..+ .+..++.|+.|++++|......+. .+++|+.|++.++. +..++.
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~---------------------------- 355 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQD---------------------------- 355 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCS----------------------------
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccCh----------------------------
Confidence 333 334455555555555544333232 34455555555431 221110
Q ss_pred CCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCcEEEccccccCCCCCcccccccceeeecCCCCCcc--ccCCC
Q 000983 913 SDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTL--VRAIP 990 (1199)
Q Consensus 913 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~--~~~l~ 990 (1199)
..+..+++|+.|+++++ .++.++..++++.|++++|... .+|.. ..+++.|++++|..... +..+.
T Consensus 356 --------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~L~~L~l~~N~l~-~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 356 --------QTFKFLEKLQTLDLRDN-ALTTIHFIPSIPDIFLSGNKLV-TLPKI--NLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp --------SCSCSCCCCCEEEEETC-CSCCCSSCCSCSEEEEESCCCC-CCCCC--CTTCCEEECCSCCCCSSTTHHHHT
T ss_pred --------hhhcCCCCCCEEECCCC-CCCcccCCCCcchhccCCCCcc-ccccc--ccccceeecccCccccCchhhhhh
Confidence 11233556666666664 3455555666778888887644 44443 45788888888873332 23345
Q ss_pred CCCCCCEEeecCCCCCCCCCC--CCCCCccceEEEccCCCCCCCcc----cccCCCCCCcceEEecCCCCCCcCCCCCcc
Q 000983 991 ETSSLNFLILSKISNLDSFPR--WPNLPGLKALYIRDCKDLVSLSG----EGALQSLTSLNLLSIRGCPKLETLPDEGLP 1064 (1199)
Q Consensus 991 ~l~sL~~L~L~~n~~l~~~~~--~~~l~~L~~L~l~~c~~L~~l~~----~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 1064 (1199)
.+++|+.|++++|.+....+. +..+++|+.|++++|. ++..+. ...+.++++|++|++++|. ++.++...+.
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 501 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFS 501 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSSS
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCCc-ccccChhHcc
Confidence 778888999998886654333 3567888888888887 432221 1357778888888888874 6666655443
Q ss_pred --CCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCcCeEEccCCcc
Q 000983 1065 --TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1065 --~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~l~~sL~~L~i~~c~~ 1126 (1199)
++|+.|++++|. ++.+|+ ..+. ++|+.|++++| .++.++...+ .+|+.|++++||.
T Consensus 502 ~l~~L~~L~Ls~N~-l~~l~~-~~~~--~~L~~L~Ls~N-~l~~~~~~~~-~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 502 HLTALRGLSLNSNR-LTVLSH-NDLP--ANLEILDISRN-QLLAPNPDVF-VSLSVLDITHNKF 559 (844)
T ss_dssp SCCSCSEEEEESCC-CSSCCC-CCCC--SCCCEEEEEEE-CCCCCCSCCC-SSCCEEEEEEECC
T ss_pred chhhhheeECCCCC-CCccCh-hhhh--ccccEEECCCC-cCCCCChhHh-CCcCEEEecCCCc
Confidence 788888888874 677765 1233 78888888888 5665554433 5788888888775
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.3e-31 Score=325.64 Aligned_cols=321 Identities=17% Similarity=0.178 Sum_probs=181.6
Q ss_pred CCCceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCc
Q 000983 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELK 614 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~ 614 (1199)
.++.++++.+..+.+..+....+..+++|++|.+. .+.+..+.+..|.++++|++|+|++|.+..+| ..|++++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-----~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-----RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECT-----TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECC-----CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 45678888888888877666667888888888887 34455566677888889999999988888665 6788888
Q ss_pred cccEEeccCCCccccch-hhcccCcccEEecCCCCccc-ccchhhccccccceeecccccccccccCCCCcCCcccc---
Q 000983 615 LLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNL--- 689 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L--- 689 (1199)
+|++|++++|.++.+|. .++++++|++|++++|.+.. .+|..+.++++|++|++++|.+..+ .|..++.+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLL 178 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE--CGGGGHHHHTCTTC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee--cHHHccchhccchh
Confidence 99999999888888876 68888899999998887554 4788888888999999888866422 23556666666
Q ss_pred -CccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHh
Q 000983 690 -HNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL 768 (1199)
Q Consensus 690 -~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 768 (1199)
+.|++.++. ........+..+ +|+ .+.+.............+..+..++.+.+.+........ ........+
T Consensus 179 ~~~L~l~~n~-l~~~~~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~----l~~~~~~~~ 251 (570)
T 2z63_A 179 NLSLDLSLNP-MNFIQPGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN----LEKFDKSAL 251 (570)
T ss_dssp CCEEECTTCC-CCEECTTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS----CEECCTTTT
T ss_pred hhhcccCCCC-ceecCHHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchh----hhhcchhhh
Confidence 445544321 122222222221 222 222222111111111223333444444443332111000 000000011
Q ss_pred hccCCCCCCcEEEEeec--CCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCceecCCCCCcc
Q 000983 769 EDLQPHPNLEELQIFNY--FGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDCR 845 (1199)
Q Consensus 769 ~~l~~~~~L~~L~l~~~--~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 845 (1199)
..+..+ .++.+.+.++ .....|.++ ..+++|+.|++++|...... .+..+ +|++|++++|... .++. ..++
T Consensus 252 ~~l~~l-~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~ 325 (570)
T 2z63_A 252 EGLCNL-TIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLK 325 (570)
T ss_dssp GGGGGS-EEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCS
T ss_pred cccccc-chhhhhhhcchhhhhhchhhh--cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc-cccc
Confidence 111111 2344444432 123334444 34566666666666555443 44445 6666666666433 2222 3455
Q ss_pred cccccccCCCCCCCcCCC-cCCCcCeEEEecc
Q 000983 846 FLGRLKISNCPRLNELPE-CMPNLTVMKIKKC 876 (1199)
Q Consensus 846 ~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c 876 (1199)
.|+.+++++|......+. .+++|+.|++.+|
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp SCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred ccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 666666666654433332 4566666666553
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=8.3e-31 Score=326.70 Aligned_cols=102 Identities=24% Similarity=0.249 Sum_probs=56.2
Q ss_pred ccceEEEccCCCCCCCcccccCC--CCCCcceEEecCCCCCCcCCCCCc-cCCcceEEecc------CCCCcccCCCCCC
Q 000983 1017 GLKALYIRDCKDLVSLSGEGALQ--SLTSLNLLSIRGCPKLETLPDEGL-PTSLKCLIIAS------CSGLKSLGPRGTL 1087 (1199)
Q Consensus 1017 ~L~~L~l~~c~~L~~l~~~~~l~--~l~~L~~L~l~~c~~l~~l~~~~~-~~sL~~L~l~~------c~~L~~lp~~~~l 1087 (1199)
+|+.|+|++|. ++.+|. .+. .+++|+.|+|++|. +..+|.... .++|+.|++++ |.....+|. .+
T Consensus 729 ~L~~L~Ls~N~-L~~lp~--~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l 802 (876)
T 4ecn_A 729 LLTTIDLRFNK-LTSLSD--DFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--GI 802 (876)
T ss_dssp GCCEEECCSSC-CCCCCG--GGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--TG
T ss_pred CccEEECCCCC-CccchH--HhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChH--HH
Confidence 45555555553 344442 222 45555555555543 223432211 14555555543 444455665 67
Q ss_pred CCCCCCCceeecCCCCCCCCCCCCCCCCcCeEEccCCcc
Q 000983 1088 KSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1088 ~~l~sL~~L~i~~c~~l~~lp~~~l~~sL~~L~i~~c~~ 1126 (1199)
.++++|++|++++| .++.+|.. +.++|+.|++++|+.
T Consensus 803 ~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 803 TTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp GGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred hcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 77777777777777 45777765 446777777777764
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.6e-30 Score=320.50 Aligned_cols=173 Identities=19% Similarity=0.218 Sum_probs=97.5
Q ss_pred CCccccchhhcccCcccEEecCCCCcccc-----------------cchhhc--cccccceeecccccccccccCCCCcC
Q 000983 624 TEIKVLPNSICNLYNLQTLKLIGCIWIME-----------------LPKDLA--NLVKLRNLELEEMFWFKCSTLPAGIG 684 (1199)
Q Consensus 624 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-----------------lp~~i~--~L~~L~~L~l~~n~~~~~~~lp~~i~ 684 (1199)
|.++.+|..++++++|++|+|++|.+.+. +|..++ ++++|++|++++|.+. +.+|..++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~~~p~~l~ 270 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--TKLPTFLK 270 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--SSCCTTTT
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--ccChHHHh
Confidence 45556777777777777777777765443 777776 7777777777777543 45677777
Q ss_pred CccccCccCeEEecccCc-CChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccc
Q 000983 685 KLTNLHNLHVFRVGSKSG-YRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGD 763 (1199)
Q Consensus 685 ~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 763 (1199)
++++|++|+++++...++ ..+..+..+. .+..+++|+.|+++.|... ..|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~--------------------~~~~l~~L~~L~L~~n~l~-~ip-------- 321 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALA--------------------DAPVGEKIQIIYIGYNNLK-TFP-------- 321 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHH--------------------HSGGGGTCCEEECCSSCCS-SCC--------
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhh--------------------ccccCCCCCEEECCCCcCC-ccC--------
Confidence 777777776655421222 1222222110 1122345556666555433 111
Q ss_pred hHHHhh--ccCCCCCCcEEEEeecCCC-CCCcccccCccCceeEEEEeCccCcccc-CcCCcCC-cCeEEecCCCCc
Q 000983 764 EERLLE--DLQPHPNLEELQIFNYFGN-SLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSS-LRVLNIKGMLEL 835 (1199)
Q Consensus 764 ~~~~~~--~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~-L~~L~L~~~~~~ 835 (1199)
. .+..+++|+.|+++++... .+| .+ ..+++|+.|++++|.+.... .++.+++ |++|++++|...
T Consensus 322 -----~~~~l~~l~~L~~L~L~~N~l~g~ip-~~--~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 322 -----VETSLQKMKKLGMLECLYNQLEGKLP-AF--GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp -----CHHHHTTCTTCCEEECCSCCCEEECC-CC--EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred -----chhhhccCCCCCEEeCcCCcCccchh-hh--CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc
Confidence 2 3445566666666655544 555 33 44666666666666555333 4556666 666666666533
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.7e-30 Score=313.56 Aligned_cols=202 Identities=19% Similarity=0.179 Sum_probs=142.3
Q ss_pred CcccEEecCCCCCccc-CcccccCccccEEeccCCCccccc-hhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
+.|++|+|++|.++.+ |..|+++++|++|+|++|.+..+| ..|+++++|++|++++|.+.+..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 7899999999999966 578999999999999999999775 68999999999999999866655666999999999999
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEec
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 748 (1199)
++|.+..+ .+|..++++++|++|++.++.......... +..+++|+.|++++|
T Consensus 106 s~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--------------------------~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 106 MGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRID--------------------------FAGLTSLNELEIKAL 158 (549)
T ss_dssp TTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTT--------------------------TTTCCEEEEEEEEET
T ss_pred CCCccccc-chhhhhhccCCccEEECCCCccccccCHhh--------------------------hhcccccCeeeccCC
Confidence 99976532 456788999999999998864222222122 334456666666666
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-----CcCCcCC
Q 000983 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-----SLGQLSS 823 (1199)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-----~l~~l~~ 823 (1199)
...... +..+..+++|+.|+++++....+|.++. ..+++|+.|++++|.+.... ....+++
T Consensus 159 ~l~~~~-------------~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 159 SLRNYQ-------------SQSLKSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp TCCEEC-------------TTTTTTCSEEEEEEEECSBSTTHHHHHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred cccccC-------------hhhhhccccCceEecccCcccccchhhH-hhcccccEEEccCCccccccccccchhhhhhc
Confidence 443211 1344555666666666655555555542 23666777777766655431 2234566
Q ss_pred cCeEEecCCC
Q 000983 824 LRVLNIKGML 833 (1199)
Q Consensus 824 L~~L~L~~~~ 833 (1199)
|+.|++++|.
T Consensus 225 L~~L~l~~n~ 234 (549)
T 2z81_A 225 MKKLAFRGSV 234 (549)
T ss_dssp CCEEEEESCE
T ss_pred ccceeccccc
Confidence 6666666653
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=311.23 Aligned_cols=476 Identities=18% Similarity=0.161 Sum_probs=310.9
Q ss_pred CCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCccccEEeccCCCccccc-hhhcccCcc
Q 000983 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLP-NSICNLYNL 639 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L 639 (1199)
+.++.|.+. .+.+..+.+..|.++++|++|+|++|.+..++ ..|+++++|++|+|++|.++.+| ..|+++++|
T Consensus 28 ~~l~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECC-----SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEcc-----CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 578899887 45555566667899999999999999999775 56999999999999999999886 689999999
Q ss_pred cEEecCCCCcccccch-hhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCC---
Q 000983 640 QTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLT--- 715 (1199)
Q Consensus 640 ~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--- 715 (1199)
++|++++|. +..+|. .++++++|++|++++|.+.. ..+|..++++++|++|++.++. ........++.+++|.
T Consensus 103 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 103 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCC
T ss_pred ccccccccc-cccCCCccccccccccEEecCCCccce-ecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhh
Confidence 999999998 445554 69999999999999997643 2478899999999999998653 3333334444444441
Q ss_pred CceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEee--cCC----CC
Q 000983 716 GKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFN--YFG----NS 789 (1199)
Q Consensus 716 ~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~--~~~----~~ 789 (1199)
..+.+.... ........+... +|+.|+++.+.... ..+...+..+++++.+.+.. ... ..
T Consensus 180 ~~L~l~~n~-l~~~~~~~~~~~-~L~~L~l~~n~~~~------------~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 180 LSLDLSLNP-MNFIQPGAFKEI-RLHKLTLRNNFDSL------------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp CEEECTTCC-CCEECTTTTTTC-EEEEEEEESCCSCT------------THHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred hhcccCCCC-ceecCHHHhccC-cceeEecccccccc------------cchhhhhcCccccceeeeccccccCchhhhh
Confidence 133332211 111112223333 68888888763321 12223344455666655542 111 11
Q ss_pred CCcccccCccC--ceeEEEEeCc-cCcccc--CcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCC-
Q 000983 790 LPQWMRDGRLQ--NLVSLTLKGC-TNCRIL--SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE- 863 (1199)
Q Consensus 790 ~p~~~~~~~l~--~L~~L~L~~~-~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~- 863 (1199)
++.... ..+. .++.+++.++ ...... .++.+++|+.|++++|........+..+ .|+.+++++|... .+|.
T Consensus 246 ~~~~~~-~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~ 322 (570)
T 2z63_A 246 FDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTL 322 (570)
T ss_dssp CCTTTT-GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBC
T ss_pred cchhhh-ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcc
Confidence 111111 1122 4567777766 333332 6778899999999988544333334444 6777777776544 3333
Q ss_pred cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCCCC
Q 000983 864 CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGL 943 (1199)
Q Consensus 864 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 943 (1199)
.+++|+.|.+.++......+ ...+++|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~---------------------------------------~~~~~~L-------------- 349 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFS---------------------------------------EVDLPSL-------------- 349 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCC---------------------------------------CCBCTTC--------------
T ss_pred cccccCEEeCcCCccccccc---------------------------------------cccCCCC--------------
Confidence 55666666666543211110 0122333
Q ss_pred CCCCCCCcEEEccccccCCC--CC-cccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCC--CCCCCCcc
Q 000983 944 PQIFAPQKLEISGCDLLSTL--PN-SEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFP--RWPNLPGL 1018 (1199)
Q Consensus 944 ~~~~~l~~L~l~~~~~~~~~--p~-~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~--~~~~l~~L 1018 (1199)
+.|++++|...... +. ...+++|++|++++|.....+..+..+++|+.|++++|.+....+ .+..+++|
T Consensus 350 ------~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 350 ------EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp ------CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ------CEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 55555555432221 11 134578888888888755555557788889999999888766555 35788889
Q ss_pred ceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCC-CcCCCC-CccCCcceEEeccCCCCcccCCCCCCCCCCCCCce
Q 000983 1019 KALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKL-ETLPDE-GLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDF 1096 (1199)
Q Consensus 1019 ~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l-~~l~~~-~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L 1096 (1199)
++|++++|......+ ..+.++++|++|++++|... ..+|.. .-.++|++|++++|......|. .+.++++|++|
T Consensus 424 ~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L 499 (570)
T 2z63_A 424 IYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--AFNSLSSLQVL 499 (570)
T ss_dssp CEEECTTSCCEECCT--TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEE
T ss_pred CEEeCcCCcccccch--hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh--hhhcccCCCEE
Confidence 999999887333333 56788899999999988743 245532 1237899999998874333355 78889999999
Q ss_pred eecCCCCCCCCCCCC--CCCCcCeEEccCCcc
Q 000983 1097 YIEDCPLLQSFPEDG--LPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1097 ~i~~c~~l~~lp~~~--l~~sL~~L~i~~c~~ 1126 (1199)
++++| .++.+|... ..++|++|++++|+.
T Consensus 500 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 500 NMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99998 677776543 347899999998875
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=306.97 Aligned_cols=426 Identities=18% Similarity=0.153 Sum_probs=259.5
Q ss_pred CcccEEecCCCCCcccC-cccccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
++|++|+|++|.+..+| ..|.++++|++|+|++|.++.+ |..|+++++|++|++++|. +..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 56777777777766554 4566677777777777776655 5566777777777777665 3456655 6667777777
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCcccccccccccccccccc--ceeEEE
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESL--HKLVFE 746 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L--~~L~l~ 746 (1199)
++|.+.. ..+|..++++++|++|+++++.. .+ ..+..+.+| +.|+++
T Consensus 98 ~~N~l~~-~~~p~~~~~l~~L~~L~L~~n~l-~~-----------------------------~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 98 SFNAFDA-LPICKEFGNMSQLKFLGLSTTHL-EK-----------------------------SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp CSSCCSS-CCCCGGGGGCTTCCEEEEEESSC-CG-----------------------------GGGGGGTTSCEEEEEEE
T ss_pred cCCcccc-ccchhhhccCCcceEEEecCccc-ch-----------------------------hhccccccceeeEEEee
Confidence 7765532 13456666677777776665321 10 112233344 777777
Q ss_pred ecCC--CCCCCCCCCCccchHHHhhccCCCCCCcEEEE--eecC-CCCCCcccccCccCceeEEEEeCcc-------Ccc
Q 000983 747 WSNN--RDSSPQSQDVSGDEERLLEDLQPHPNLEELQI--FNYF-GNSLPQWMRDGRLQNLVSLTLKGCT-------NCR 814 (1199)
Q Consensus 747 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l--~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~-------~~~ 814 (1199)
+|.. ....+ ..+..+.. +.+++ .++. ...++.... ..+++|+.|++++|. ...
T Consensus 147 ~n~l~~~~~~~-------------~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 147 LGETYGEKEDP-------------EGLQDFNT-ESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp ECTTTTSSCCT-------------TTTTTCCE-EEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ccccccccccc-------------cccccccc-ceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeec
Confidence 7655 21111 12222221 23333 2222 222332221 456777777777764 222
Q ss_pred cc-CcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCC--cCCCcCeEEEecccccccCCCCCchhee
Q 000983 815 IL-SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE--CMPNLTVMKIKKCCSLKALPVTPFLQFL 891 (1199)
Q Consensus 815 ~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~l~~l 891 (1199)
.. .++.+++|+.|++++|....... ..++. ..++|+.|++.+|.--..+|..-
T Consensus 212 ~~~~l~~l~~L~~L~l~~~~l~~~~~-------------------~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~----- 267 (520)
T 2z7x_B 212 ILAKLQTNPKLSNLTLNNIETTWNSF-------------------IRILQLVWHTTVWYFSISNVKLQGQLDFRD----- 267 (520)
T ss_dssp HHHGGGGCTTCCEEEEEEEEEEHHHH-------------------HHHHHHHHTSSCSEEEEEEEEEESCCCCCC-----
T ss_pred chhhhccccchhhccccccccCHHHH-------------------HHHHHHhhhCcccEEEeecccccCccccch-----
Confidence 22 56667777777776653221100 00000 12345555554442211222100
Q ss_pred eeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCC--------CCCCCcEEEccccccCCC
Q 000983 892 ILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQ--------IFAPQKLEISGCDLLSTL 963 (1199)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~--------~~~l~~L~l~~~~~~~~~ 963 (1199)
.......++.|+.+++..+.- .+|. ...++.|++++|.... .
T Consensus 268 ---------------------------~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~ 317 (520)
T 2z7x_B 268 ---------------------------FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-M 317 (520)
T ss_dssp ---------------------------CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-C
T ss_pred ---------------------------hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-c
Confidence 000002334455555554432 3331 1346778888876433 2
Q ss_pred CCcccccccceeeecCCCC-CccccCCCCCCCCCEEeecCCCCCC--CCCC-CCCCCccceEEEccCCCCCC-CcccccC
Q 000983 964 PNSEFSQRLQLLALEGCPD-GTLVRAIPETSSLNFLILSKISNLD--SFPR-WPNLPGLKALYIRDCKDLVS-LSGEGAL 1038 (1199)
Q Consensus 964 p~~~~~~~L~~L~l~~~~~-~~~~~~l~~l~sL~~L~L~~n~~l~--~~~~-~~~l~~L~~L~l~~c~~L~~-l~~~~~l 1038 (1199)
+....+++|++|++++|.. ...+..+..+++|++|++++|.+.. .+|. +..+++|++|++++|. ++. +|. ..+
T Consensus 318 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~-~~~ 395 (520)
T 2z7x_B 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK-GDC 395 (520)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG-CSC
T ss_pred cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCccccc-chh
Confidence 2224578999999999984 3467788899999999999998765 3333 5789999999999998 444 664 358
Q ss_pred CCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCCC--CCCCc
Q 000983 1039 QSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDG--LPENL 1116 (1199)
Q Consensus 1039 ~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~--l~~sL 1116 (1199)
..+++|++|++++|.....+|. .++++|+.|++++|. ++.+|. .+..+++|++|++++| .++.+|... ..++|
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~N~-l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNK-IKSIPK--QVVKLEALQELNVASN-QLKSVPDGIFDRLTSL 470 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGG-SCCTTCCEEECCSSC-CCCCCG--GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ccCccCCEEECcCCCCCcchhh-hhcccCCEEECCCCc-ccccch--hhhcCCCCCEEECCCC-cCCccCHHHhccCCcc
Confidence 8899999999999875455443 344799999999985 778887 6779999999999999 788998752 34799
Q ss_pred CeEEccCCcc
Q 000983 1117 QHLVIQNCPL 1126 (1199)
Q Consensus 1117 ~~L~i~~c~~ 1126 (1199)
++|++++||.
T Consensus 471 ~~L~l~~N~~ 480 (520)
T 2z7x_B 471 QKIWLHTNPW 480 (520)
T ss_dssp CEEECCSSCB
T ss_pred cEEECcCCCC
Confidence 9999999875
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=7.3e-29 Score=316.74 Aligned_cols=482 Identities=20% Similarity=0.179 Sum_probs=313.5
Q ss_pred CCceeEEEEEecc-CCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcc-cCcc--ccc
Q 000983 537 SPETRHVSLLCKH-VEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTV-LPDS--VEE 612 (1199)
Q Consensus 537 ~~~~r~lsl~~~~-~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~--i~~ 612 (1199)
-...+.+.+..+. ...+....+.++++|++|.+. .+.+....+..|..+++|++|+|++|.+.. +|.. +++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls-----~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-----SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT-----TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC-----CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 4578899998874 334445668899999999997 455666667889999999999999999984 5655 999
Q ss_pred CccccEEeccCCCcccc--chhhcccCcccEEecCCCCcccccchhhccc--cccceeecccccccccccCCCCcCCccc
Q 000983 613 LKLLRYLDLSRTEIKVL--PNSICNLYNLQTLKLIGCIWIMELPKDLANL--VKLRNLELEEMFWFKCSTLPAGIGKLTN 688 (1199)
Q Consensus 613 l~~Lr~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~l~~n~~~~~~~lp~~i~~l~~ 688 (1199)
+++|++|+|++|.+..+ +..|+++++|++|++++|.+....|..+..+ ++|+.|++++|.+. ...|..++.+++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~--~~~~~~~~~~~~ 199 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY--SRVSVDWGKCMN 199 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC--CCCCCCCCSSSC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc--cccccchhhcCC
Confidence 99999999999999866 3579999999999999999878888889888 89999999999775 345666666655
Q ss_pred ------cCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCcc
Q 000983 689 ------LHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSG 762 (1199)
Q Consensus 689 ------L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 762 (1199)
|+.|+++++. .++..+..+...-. ...+..+.+..+..... ........
T Consensus 200 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~-----------------------~~~l~~L~l~~~~~~~~-~~~~~l~~ 254 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNG-WTVDITGNFSNAIS-----------------------KSQAFSLILAHHIMGAG-FGFHNIKD 254 (844)
T ss_dssp TTTTCCBSEEBCSSCC-SSTTTTSGGGGTSC-----------------------SCCBSEEECCSSCCBCS-SSCSSSTT
T ss_pred ccccCceeEEecCCCc-CchhHHHHHHhhcC-----------------------cccccceeccccccccc-ccccccCC
Confidence 8888887642 22222222221100 01222222221100000 00000000
Q ss_pred chHHHhhccCCCCCCcEEEEeecCCCCC-CcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecC
Q 000983 763 DEERLLEDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP 839 (1199)
Q Consensus 763 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~ 839 (1199)
.....+..+ ..++|+.|+++++....+ |..+ ..+++|+.|+|++|.+.... .++.+++|++|++++|......+
T Consensus 255 ~~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 255 PDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp GGGTTTTTT-TTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred CChhhhhcc-ccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 011111111 125677777775554444 3333 45677777777777666554 56677777777777775544333
Q ss_pred -CCCCcccccccccCCCCCCCcCCC---cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCC
Q 000983 840 -NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDN 915 (1199)
Q Consensus 840 -~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~ 915 (1199)
.+..++.|+.|++++|......+. .+++|+.|++.++. ++.++.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~------------------------------- 379 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF------------------------------- 379 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS-------------------------------
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccC-------------------------------
Confidence 456667777777777754322222 35667777776642 333332
Q ss_pred CCcccccccccccccEEEecCCCCCCCCCC-CCCCCcEEEccccccCCCCCc---ccccccceeeecCCCCCccc--cCC
Q 000983 916 GQGQHLLLHSFQTLLEMKAINCPKLRGLPQ-IFAPQKLEISGCDLLSTLPNS---EFSQRLQLLALEGCPDGTLV--RAI 989 (1199)
Q Consensus 916 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~l~~L~l~~~~~~~~~p~~---~~~~~L~~L~l~~~~~~~~~--~~l 989 (1199)
+++|+.|.+.++. ++.+|. ...++.|++++|.... ++.. ..+++|++|++++|.....+ ..+
T Consensus 380 ----------~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 380 ----------IPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp ----------CCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCS-STTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred ----------CCCcchhccCCCC-cccccccccccceeecccCcccc-CchhhhhhcCCccceeeCCCCccccccccccc
Confidence 3344444444432 223332 2345677887776433 3322 24678899999988844332 235
Q ss_pred CCCCCCCEEeecCCCCCCCC-----C-CCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCc
Q 000983 990 PETSSLNFLILSKISNLDSF-----P-RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL 1063 (1199)
Q Consensus 990 ~~l~sL~~L~L~~n~~l~~~-----~-~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 1063 (1199)
..+++|+.|++++|.+.... + .+..+++|+.|+|++|. ++.++. ..+.++++|++|++++|. ++.++...+
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 524 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPP-GVFSHLTALRGLSLNSNR-LTVLSHNDL 524 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCT-TSSSSCCSCSEEEEESCC-CSSCCCCCC
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc-ccccCh-hHccchhhhheeECCCCC-CCccChhhh
Confidence 56788999999999765322 1 25778899999999986 666664 468889999999999974 777887777
Q ss_pred cCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCC
Q 000983 1064 PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQ 1105 (1199)
Q Consensus 1064 ~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~ 1105 (1199)
+++|+.|++++|. ++.+++ ..+.+|+.|++++||...
T Consensus 525 ~~~L~~L~Ls~N~-l~~~~~----~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 525 PANLEILDISRNQ-LLAPNP----DVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp CSCCCEEEEEEEC-CCCCCS----CCCSSCCEEEEEEECCCC
T ss_pred hccccEEECCCCc-CCCCCh----hHhCCcCEEEecCCCccc
Confidence 7899999999987 444433 134588899999887554
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.2e-30 Score=320.34 Aligned_cols=62 Identities=18% Similarity=0.042 Sum_probs=37.3
Q ss_pred cCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCC-cCeEEecCCCCc
Q 000983 771 LQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSS-LRVLNIKGMLEL 835 (1199)
Q Consensus 771 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~-L~~L~L~~~~~~ 835 (1199)
+..+++|+.|++++|....+| .+ +.+++|+.|+|++|.+.... .+..+++ |+.|+|++|...
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~--~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AF--GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CC--CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred hhcCCCCCEEECCCCCcccch-hh--cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC
Confidence 445556666666655555666 34 45666666777666665333 5666666 666666666533
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.9e-29 Score=308.11 Aligned_cols=452 Identities=19% Similarity=0.190 Sum_probs=225.5
Q ss_pred CCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCccccEEeccCCCccccchh-hcccCcc
Q 000983 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLPNS-ICNLYNL 639 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 639 (1199)
+.+++|.+. .+.+....+..|..+++|++|+|++|.+..++ ..|+++++|++|+|++|.+..+|.. |+++++|
T Consensus 26 ~~L~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLS-----FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECC-----SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECc-----CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 345555544 22233333334555555555555555555333 3455555555555555555544432 5555555
Q ss_pred cEEecCCCCccc-ccchhhccccccceeecccccccccccCC-CCcCCccccCccCeEEecccCcCChhhhcCCCCCCCc
Q 000983 640 QTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLP-AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGK 717 (1199)
Q Consensus 640 ~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~ 717 (1199)
++|++++|.+.. ..|..+.++++|++|++++|.. .+.+| ..++.+++|++|++.++ ...+..+..+..+++|+ .
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~-~ 176 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIH-H 176 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEE-E
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCcc--ccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCc-e
Confidence 555555554332 2344555555555555555531 12233 34555555555555543 22333333344444433 2
Q ss_pred eeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCC-----CCc
Q 000983 718 LHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNS-----LPQ 792 (1199)
Q Consensus 718 L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~ 792 (1199)
+.+...... ......+..+++|+.|+++.|......... ......+++|+.|++.++.... ++.
T Consensus 177 L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 177 LTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP----------LPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp EEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC----------CSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred EecccCccc-ccchhhHhhcccccEEEccCCccccccccc----------cchhhhhhcccceeccccccchhHHHHHHH
Confidence 332221110 011111234677888888887654321000 0112345688888888654321 222
Q ss_pred ccccCccCceeEEEEeCccCcccc--------CcCCcCCcCeEEecCCCCceecC--CC----CCcccccccccCCCCCC
Q 000983 793 WMRDGRLQNLVSLTLKGCTNCRIL--------SLGQLSSLRVLNIKGMLELEKWP--ND----EDCRFLGRLKISNCPRL 858 (1199)
Q Consensus 793 ~~~~~~l~~L~~L~L~~~~~~~~~--------~l~~l~~L~~L~L~~~~~~~~~~--~~----~~~~~L~~L~l~~~~~l 858 (1199)
.+ ..+++|+.|++++|...... .+..+++|+.|.+.++....... .. .....++.+++++|. +
T Consensus 246 ~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l 322 (549)
T 2z81_A 246 LL--RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-V 322 (549)
T ss_dssp GG--GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-C
T ss_pred Hh--hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-c
Confidence 22 34678888888888765432 34667888888888774322110 00 113567788888876 3
Q ss_pred CcCCC----cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEe
Q 000983 859 NELPE----CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKA 934 (1199)
Q Consensus 859 ~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l 934 (1199)
..+|. .+++|+.|++.++.-...+|.. ......+++
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------------------~~~~~~l~~------ 362 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKN----------------------------------SACKGAWPS------ 362 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHH----------------------------------HTCTTSSTT------
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccc----------------------------------hhhhhcccc------
Confidence 45554 3567777776664321111000 000011222
Q ss_pred cCCCCCCCCCCCCCCCcEEEccccccCCCCC----cccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCC
Q 000983 935 INCPKLRGLPQIFAPQKLEISGCDLLSTLPN----SEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFP 1010 (1199)
Q Consensus 935 ~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~----~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~ 1010 (1199)
++.|++++|.... ++. ...+++|++|++++|.....+..+..+++|++|++++|.+. .+|
T Consensus 363 --------------L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~ 426 (549)
T 2z81_A 363 --------------LQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVK 426 (549)
T ss_dssp --------------CCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCC
T ss_pred --------------CcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-ccc
Confidence 2444444443221 111 12345666666666665555555666666666666666533 233
Q ss_pred CCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCC
Q 000983 1011 RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSL 1090 (1199)
Q Consensus 1011 ~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l 1090 (1199)
. ...++|++|++++|. ++.+ ..++++|++|++++|. ++.+|.....++|+.|++++|. ++.+++ ..+..+
T Consensus 427 ~-~~~~~L~~L~Ls~N~-l~~~-----~~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l 496 (549)
T 2z81_A 427 T-CIPQTLEVLDVSNNN-LDSF-----SLFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRNQ-LKSVPD-GIFDRL 496 (549)
T ss_dssp T-TSCTTCSEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSSC-CCCCCT-TGGGGC
T ss_pred c-hhcCCceEEECCCCC-hhhh-----cccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCCc-cCCcCH-HHHhcC
Confidence 2 112466666666665 3322 2355666666666653 4455554444566666666654 444433 145566
Q ss_pred CCCCceeecCCC
Q 000983 1091 NSLKDFYIEDCP 1102 (1199)
Q Consensus 1091 ~sL~~L~i~~c~ 1102 (1199)
++|++|++++|+
T Consensus 497 ~~L~~L~l~~N~ 508 (549)
T 2z81_A 497 TSLQKIWLHTNP 508 (549)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEEecCCC
Confidence 666666666664
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.7e-28 Score=303.17 Aligned_cols=498 Identities=16% Similarity=0.114 Sum_probs=282.8
Q ss_pred CccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCc-ccccCccccEEeccCCCccccch-hhcccCccc
Q 000983 563 KLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQ 640 (1199)
Q Consensus 563 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~ 640 (1199)
.++.|.+. .|.+..+++..|.++++|++|||++|.|+.+|+ .|.+|++|++|+|++|+|+.+|. .|++|++|+
T Consensus 53 ~~~~LdLs-----~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEee-----CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 56666665 445555555666777777777777777776644 46677777777777777776654 467777777
Q ss_pred EEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCce-e
Q 000983 641 TLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKL-H 719 (1199)
Q Consensus 641 ~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L-~ 719 (1199)
+|++++|.+....|..|+++++|++|++++|.+.. ..+|..++.+++|++|++.++ ...+.....+..+.++.... .
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCcccc-CCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhh
Confidence 77777766333223346677777777777765532 234566666777777766653 22332333333322222100 0
Q ss_pred eCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCC---CCC----Cc
Q 000983 720 ISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFG---NSL----PQ 792 (1199)
Q Consensus 720 l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---~~~----p~ 792 (1199)
.....+..............+..+.+..+... .......+..+..++...+..... ..+ +.
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~------------~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS------------LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSS------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred hhcccCcccccCcccccchhhhhhhhhccccc------------ccccchhhcCCccccccccccccccccccccccccc
Confidence 00001111111111112223344444433211 111112233344555544432111 011 11
Q ss_pred ccccCccCceeEEEEeCccCcccc-----CcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCCcCCC
Q 000983 793 WMRDGRLQNLVSLTLKGCTNCRIL-----SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPN 867 (1199)
Q Consensus 793 ~~~~~~l~~L~~L~L~~~~~~~~~-----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 867 (1199)
.+ ..+..+..+.+..+...... .+..+++++.+.+.++... .+..+.....++.+++.+|......+..++.
T Consensus 274 ~~--~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 350 (635)
T 4g8a_A 274 AL--EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 350 (635)
T ss_dssp TT--GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGGGSCCCCSEEEEESCEESSCCCCBCTT
T ss_pred cc--ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cccccccchhhhhhhcccccccCcCcccchh
Confidence 11 22344444444433222111 3455666777777666432 2223333445566666666544433345666
Q ss_pred cCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCC------
Q 000983 868 LTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLR------ 941 (1199)
Q Consensus 868 L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~------ 941 (1199)
|+.+.+.........+ ...+++|+.+.++.+.-..
T Consensus 351 L~~l~l~~n~~~~~~~---------------------------------------~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAFS---------------------------------------EVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp CCEEEEESCCSCCBCC---------------------------------------CCBCTTCCEEECCSSCCBEEEECCH
T ss_pred hhhcccccccCCCCcc---------------------------------------cccccccccchhhcccccccccccc
Confidence 6666665533211110 1123444444444332110
Q ss_pred CCCCCCCCCcEEEccccccCCCCCcccccccceeeecCCC--CCccccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCcc
Q 000983 942 GLPQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCP--DGTLVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGL 1018 (1199)
Q Consensus 942 ~l~~~~~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L 1018 (1199)
......+++.+++..|......+....+++|+.+++.+|. .......+..+.+|+.+++++|.+....+. +..+++|
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 0112334566777766544444444556889999998887 333445677889999999999987776665 4788999
Q ss_pred ceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCcc--CCcceEEeccCCCCcccCCCCCCCCCCCCCce
Q 000983 1019 KALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDF 1096 (1199)
Q Consensus 1019 ~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L 1096 (1199)
+.|++++|.....+.+ ..+..+++|++|++++|. ++.++...+. ++|++|+|++|. ++.+++ ..+.++++|++|
T Consensus 472 ~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~L 547 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT-FPYKCLNSLQVL 547 (635)
T ss_dssp CEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCBCCC-GGGTTCTTCCEE
T ss_pred hhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCCc-CCCCCh-hHHhCCCCCCEE
Confidence 9999999986655443 578899999999999985 6666554443 899999999985 777765 368899999999
Q ss_pred eecCCCCCCCCCCC---CCCCCcCeEEccCCcc
Q 000983 1097 YIEDCPLLQSFPED---GLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1097 ~i~~c~~l~~lp~~---~l~~sL~~L~i~~c~~ 1126 (1199)
++++| .|+.++.. .++++|++|++++||.
T Consensus 548 ~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 548 DYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 99999 67777654 3457899999998775
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.5e-29 Score=311.77 Aligned_cols=129 Identities=21% Similarity=0.141 Sum_probs=77.1
Q ss_pred ccceeeecCCCCCccccCCC--CCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEcc------CCCCCCCcccccCCCC
Q 000983 971 RLQLLALEGCPDGTLVRAIP--ETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRD------CKDLVSLSGEGALQSL 1041 (1199)
Q Consensus 971 ~L~~L~l~~~~~~~~~~~l~--~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~------c~~L~~l~~~~~l~~l 1041 (1199)
+|++|++++|.....+..+. .+++|+.|++++|.+.. +|. +..+++|++|++++ |.....+| ..+.++
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p--~~l~~l 565 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP--EGITLC 565 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC--TTGGGC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh--HHHhcC
Confidence 45555555555444444444 66677777777776555 443 45667777777743 44344455 466777
Q ss_pred CCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCC-------CCCCCCCCCCceeecCCCCCC
Q 000983 1042 TSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPR-------GTLKSLNSLKDFYIEDCPLLQ 1105 (1199)
Q Consensus 1042 ~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~-------~~l~~l~sL~~L~i~~c~~l~ 1105 (1199)
++|++|++++|.. +.+|.. +.++|+.|++++|+.. .++.. .....+...+..+|.+|+.+.
T Consensus 566 ~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 566 PSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp SSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 7788888877663 777654 3377888888877633 32210 122334455677888887653
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.8e-28 Score=295.40 Aligned_cols=444 Identities=17% Similarity=0.136 Sum_probs=291.7
Q ss_pred eEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccEE
Q 000983 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYL 619 (1199)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L 619 (1199)
+++.+..+.+..++.... ++++.|.+. .+.+..+++..|..+++|++|+|++|.++.+ |..|+++++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNIS-----QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECC-----SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccccccccc---ccccEEECC-----CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 567777777776654322 789999987 5566677778899999999999999999966 7789999999999
Q ss_pred eccCCCccccchhhcccCcccEEecCCCCccc-ccchhhccccccceeecccccccccccCCCCcCCcccc--CccCeEE
Q 000983 620 DLSRTEIKVLPNSICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNL--HNLHVFR 696 (1199)
Q Consensus 620 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L--~~L~l~~ 696 (1199)
+|++|.++.+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.. ..++.+++| +.|++.+
T Consensus 75 ~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 75 DLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp ECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEE
T ss_pred ecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeec
Confidence 9999999999987 89999999999998665 578999999999999999997643 346677777 9999987
Q ss_pred eccc-CcCChhhhcCCCCCCCceeeCCccccc--cccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCC
Q 000983 697 VGSK-SGYRIEELKELPYLTGKLHISKLENAV--NGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQP 773 (1199)
Q Consensus 697 ~~~~-~~~~~~~l~~l~~L~~~L~l~~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (1199)
+... .+..+..+..+.. ..+.+....+.. ......+..+.+|+.|++++|..... .......+..+..
T Consensus 148 n~l~~~~~~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~~~~~~~~l~~ 218 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNT--ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK-------CSYFLSILAKLQT 218 (520)
T ss_dssp CTTTTSSCCTTTTTTCCE--EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT-------THHHHHHHHGGGG
T ss_pred cccccccccccccccccc--ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc-------cceeecchhhhcc
Confidence 5431 3333444444432 122221111111 12223344566666666666532100 0011122234555
Q ss_pred CCCCcEEEEeecCCCC-----CCcccccCccCceeEEEEeCccCcccc--Cc-----CCcCCcCeEEecCCCCceecCCC
Q 000983 774 HPNLEELQIFNYFGNS-----LPQWMRDGRLQNLVSLTLKGCTNCRIL--SL-----GQLSSLRVLNIKGMLELEKWPND 841 (1199)
Q Consensus 774 ~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l-----~~l~~L~~L~L~~~~~~~~~~~~ 841 (1199)
+++|+.|++.++.... ++.+. ..++|+.|++++|.+.+.. .+ +.+++|+.+++++|..
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~------- 288 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF------- 288 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHH---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-------
T ss_pred ccchhhccccccccCHHHHHHHHHHh---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-------
Confidence 5666666665432110 11110 1235555555555544222 22 4444444444444422
Q ss_pred CCcccccccccCCCCCCCcCCC-------cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCC
Q 000983 842 EDCRFLGRLKISNCPRLNELPE-------CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSD 914 (1199)
Q Consensus 842 ~~~~~L~~L~l~~~~~l~~~~~-------~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~ 914 (1199)
.+|. .-.+|+.|.+.++.- ..++
T Consensus 289 ------------------~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~------------------------------- 318 (520)
T 2z7x_B 289 ------------------GFPQSYIYEIFSNMNIKNFTVSGTRM-VHML------------------------------- 318 (520)
T ss_dssp ------------------CSCTHHHHHHHHTCCCSEEEEESSCC-CCCC-------------------------------
T ss_pred ------------------ecchhhhhcccccCceeEEEcCCCcc-cccc-------------------------------
Confidence 1110 012355555555321 0000
Q ss_pred CCCcccccccccccccEEEecCCCCCCCCCCCCCCCcEEEccccccCCCCCc-ccccccceeeecCCCCCc---cccCCC
Q 000983 915 NGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGT---LVRAIP 990 (1199)
Q Consensus 915 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~-~~~~~L~~L~l~~~~~~~---~~~~l~ 990 (1199)
....+..+++|++++|.....+|.. ..+++|++|++++|.... .+..+.
T Consensus 319 ---------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 319 ---------------------------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371 (520)
T ss_dssp ---------------------------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT
T ss_pred ---------------------------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh
Confidence 0012334477788888766655544 567899999999998653 345688
Q ss_pred CCCCCCEEeecCCCCCCCCCC--CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCc-cCCc
Q 000983 991 ETSSLNFLILSKISNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL-PTSL 1067 (1199)
Q Consensus 991 ~l~sL~~L~L~~n~~l~~~~~--~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~sL 1067 (1199)
.+++|++|++++|.+...+|. +..+++|++|++++|.....++ ..+. ++|++|++++|. ++.+|.... .++|
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L 446 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLP--PRIKVLDLHSNK-IKSIPKQVVKLEAL 446 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG--GSCC--TTCCEEECCSSC-CCCCCGGGGGCTTC
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh--hhhc--ccCCEEECCCCc-ccccchhhhcCCCC
Confidence 899999999999998775663 5788999999999998333333 1222 799999999985 668876433 3899
Q ss_pred ceEEeccCCCCcccCCCCCCCCCCCCCceeecCCC
Q 000983 1068 KCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1199)
Q Consensus 1068 ~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~ 1102 (1199)
++|++++|. ++.+|. ..+..+++|++|++++|+
T Consensus 447 ~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 447 QELNVASNQ-LKSVPD-GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCc-CCccCH-HHhccCCcccEEECcCCC
Confidence 999999985 778887 248899999999999996
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.9e-27 Score=288.71 Aligned_cols=427 Identities=17% Similarity=0.119 Sum_probs=262.2
Q ss_pred CcccEEecCCCCCcccC-cccccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
++|++|+|++|.+..+| ..|+++++|++|+|++|.++.+ |..|+++++|++||+++|. +..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 67777777777777655 4677777777777777777766 5567777777777777776 4466655 6777777777
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCcccccccccccccccc--ccceeEEE
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKE--SLHKLVFE 746 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~--~L~~L~l~ 746 (1199)
++|.+..+ .+|..++++++|++|++.++.. ... .+..+. +|+.|+++
T Consensus 129 s~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l-~~~-----------------------------~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 129 SFNDFDVL-PVCKEFGNLTKLTFLGLSAAKF-RQL-----------------------------DLLPVAHLHLSCILLD 177 (562)
T ss_dssp CSSCCSBC-CCCGGGGGCTTCCEEEEECSBC-CTT-----------------------------TTGGGTTSCEEEEEEE
T ss_pred CCCCcccc-CchHhhcccCcccEEecCCCcc-ccC-----------------------------chhhhhhceeeEEEee
Confidence 77755321 2345677777777777765321 110 112222 33777777
Q ss_pred ecCC--CCCCCCCCCCccchHHHhhccCCCCCCcEE--EEeecCC-CCCCcccccCccCceeEEEEeCccC-----cccc
Q 000983 747 WSNN--RDSSPQSQDVSGDEERLLEDLQPHPNLEEL--QIFNYFG-NSLPQWMRDGRLQNLVSLTLKGCTN-----CRIL 816 (1199)
Q Consensus 747 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L--~l~~~~~-~~~p~~~~~~~l~~L~~L~L~~~~~-----~~~~ 816 (1199)
.|.. ....+ ..+..+. .+.+ +++++.. ..++.... ..+++|+.|++++|.. ....
T Consensus 178 ~n~l~~~~~~~-------------~~l~~l~-~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~l~~~~ 242 (562)
T 3a79_B 178 LVSYHIKGGET-------------ESLQIPN-TTVLHLVFHPNSLFSVQVNMSV-NALGHLQLSNIKLNDENCQRLMTFL 242 (562)
T ss_dssp ESSCCCCSSSC-------------CEEEECC-EEEEEEEECSSSCCCCCCEEEE-SSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred cccccccccCc-------------ccccccC-cceEEEEecCccchhhhhhhcc-cccceEEEecccccccccchHHHHH
Confidence 7755 22111 1122111 1233 3333222 22333222 4577888888887641 1111
Q ss_pred -CcCCcCCcCeEEecCCCCce----ecCCCCCcccccccccCCCCCCCcCCCcC-----CCcCeEEEecccccccCCCCC
Q 000983 817 -SLGQLSSLRVLNIKGMLELE----KWPNDEDCRFLGRLKISNCPRLNELPECM-----PNLTVMKIKKCCSLKALPVTP 886 (1199)
Q Consensus 817 -~l~~l~~L~~L~L~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----~~L~~L~l~~c~~l~~l~~~~ 886 (1199)
.+..+++|+.|++.++.... .++.......|+.|++++|...+.+|..+ ++|+.|.+.++..... .+|
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p 320 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS 320 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecC
Confidence 45667777777777653211 00000112356666666665555555544 5555555544322110 000
Q ss_pred chheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCcEEEccccccCCCCCc
Q 000983 887 FLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS 966 (1199)
Q Consensus 887 ~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~ 966 (1199)
.-. ....+ ....++.|++++|.... .+..
T Consensus 321 ~~~--------------------------------~~~~~------------------~~~~L~~L~l~~n~~~~-~~~~ 349 (562)
T 3a79_B 321 KEA--------------------------------LYSVF------------------AEMNIKMLSISDTPFIH-MVCP 349 (562)
T ss_dssp HHH--------------------------------HHHHH------------------HTCCCSEEEEESSCCCC-CCCC
T ss_pred hhh--------------------------------hhhhh------------------ccCcceEEEccCCCccc-ccCc
Confidence 000 00000 01234666677665422 2211
Q ss_pred ccccccceeeecCCCC-CccccCCCCCCCCCEEeecCCCCCCC--CC-CCCCCCccceEEEccCCCCCC-CcccccCCCC
Q 000983 967 EFSQRLQLLALEGCPD-GTLVRAIPETSSLNFLILSKISNLDS--FP-RWPNLPGLKALYIRDCKDLVS-LSGEGALQSL 1041 (1199)
Q Consensus 967 ~~~~~L~~L~l~~~~~-~~~~~~l~~l~sL~~L~L~~n~~l~~--~~-~~~~l~~L~~L~l~~c~~L~~-l~~~~~l~~l 1041 (1199)
..+++|++|++++|.. ...+..+..+++|+.|++++|.+... +| .+..+++|++|++++|. ++. +|. ..+..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~-~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYD-RTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSS-CCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccCh-hhhcCc
Confidence 3568899999999984 34667788899999999999976542 12 26889999999999998 444 664 468889
Q ss_pred CCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCC--CCCCCcCeE
Q 000983 1042 TSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED--GLPENLQHL 1119 (1199)
Q Consensus 1042 ~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~--~l~~sL~~L 1119 (1199)
++|++|++++|.....+|. .++++|+.|++++|. ++.+|. .+..+++|++|++++| .++.+|.. ...++|+.|
T Consensus 428 ~~L~~L~l~~n~l~~~~~~-~l~~~L~~L~L~~N~-l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNR-IMSIPK--DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp TTCCEEECCSSCCCGGGGS-SCCTTCSEEECCSSC-CCCCCT--TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred ccCCEEECCCCCCCcchhh-hhcCcCCEEECCCCc-CcccCh--hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEE
Confidence 9999999999875444443 444799999999984 888987 6779999999999999 78899875 334799999
Q ss_pred EccCCcc
Q 000983 1120 VIQNCPL 1126 (1199)
Q Consensus 1120 ~i~~c~~ 1126 (1199)
++++||.
T Consensus 503 ~l~~N~~ 509 (562)
T 3a79_B 503 WLHDNPW 509 (562)
T ss_dssp ECCSCCB
T ss_pred EecCCCc
Confidence 9999875
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.8e-27 Score=293.14 Aligned_cols=507 Identities=17% Similarity=0.111 Sum_probs=306.1
Q ss_pred CCCceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCc-ccccCc
Q 000983 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELK 614 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~ 614 (1199)
.+..++++.+..|.+..++...|.++++|+.|.+. .+.+..+++++|.++++|++|+|++|.++.+|. .|.++.
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls-----~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-----RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-----TCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECC-----CCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 56789999999999998887889999999999998 566777778889999999999999999998875 589999
Q ss_pred cccEEeccCCCccccch-hhcccCcccEEecCCCCccc-ccchhhccccccceeecccccccccccCCCCcCCccccCcc
Q 000983 615 LLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNL 692 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L 692 (1199)
+|++|+|++|.++.+|. .|++|++|++|++++|.+.. .+|..+..+++|++|++++|.+..+ .|..+..+.+++.+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLL 202 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--CGGGGHHHHTCTTC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc--ccccccchhhhhhh
Confidence 99999999999999976 59999999999999998543 5788899999999999999976532 34556666666554
Q ss_pred CeEEec---ccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhh
Q 000983 693 HVFRVG---SKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLE 769 (1199)
Q Consensus 693 ~l~~~~---~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1199)
.....- ............+ .+. .+.+.............+..+..++...+..+.......... . ...
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~-~~~-~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~----~---~~~ 273 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK----F---DKS 273 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTC-EEE-EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC----C---CTT
T ss_pred hhhhhcccCcccccCcccccch-hhh-hhhhhcccccccccchhhcCCccccccccccccccccccccc----c---ccc
Confidence 433221 1111111111111 001 111111100111112223444555555554432221110000 0 001
Q ss_pred ccCCCCCCcEEEEeecCCCC----CCcccccCccCceeEEEEeCccCccccCcCCcCCcCeEEecCCCCceecCCCCCcc
Q 000983 770 DLQPHPNLEELQIFNYFGNS----LPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCR 845 (1199)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~----~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 845 (1199)
.+.....+..+.+....... .+..+ ..+.+++.+.+.++.......+....+|+.|++.+|....... ..+.
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~ 349 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLK 349 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTT--GGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC--CBCT
T ss_pred ccccccchhhhhhhhhhhcccccchhhhh--hhhcccccccccccccccccccccchhhhhhhcccccccCcCc--ccch
Confidence 12222334444444222111 11122 3356666777766655554455556667777777664322111 2234
Q ss_pred cccccccCCCCCCCcCCC-cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCccccccc
Q 000983 846 FLGRLKISNCPRLNELPE-CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLH 924 (1199)
Q Consensus 846 ~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 924 (1199)
.++.+.+.++......+. .+++|+.|.+.++.-.. ....+ ....
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~----------------------------------~~~~ 394 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF-KGCCS----------------------------------QSDF 394 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE-EEECC----------------------------------HHHH
T ss_pred hhhhcccccccCCCCcccccccccccchhhcccccc-ccccc----------------------------------cchh
Confidence 455555555543322221 45566666655432110 00000 0011
Q ss_pred ccccccEEEecCCCCCC---CCCCCCCCCcEEEccccccCCCCCc--ccccccceeeecCCCC-CccccCCCCCCCCCEE
Q 000983 925 SFQTLLEMKAINCPKLR---GLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCPD-GTLVRAIPETSSLNFL 998 (1199)
Q Consensus 925 ~~~~L~~L~l~~c~~L~---~l~~~~~l~~L~l~~~~~~~~~p~~--~~~~~L~~L~l~~~~~-~~~~~~l~~l~sL~~L 998 (1199)
...+|+.+.+..+.... .+.....++.+++.+|......+.. ..+.+++.++++.|.. ...+..+..+++|+.|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 12333344433332111 1223344566677666555444432 3457788888888873 3344566777888889
Q ss_pred eecCCCCCCC-CCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCcc--CCcceEEecc
Q 000983 999 ILSKISNLDS-FPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIAS 1074 (1199)
Q Consensus 999 ~L~~n~~l~~-~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~l~~ 1074 (1199)
++++|..... .|. +..+++|++|+|++|. ++.+++ ..|.++++|++|+|++|. ++.++...+. ++|+.|++++
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh-HHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCC
Confidence 9988875553 333 5788889999998886 666654 578888899999998875 6666654443 7899999988
Q ss_pred CCCCcccCCCCCCCCC-CCCCceeecCCC
Q 000983 1075 CSGLKSLGPRGTLKSL-NSLKDFYIEDCP 1102 (1199)
Q Consensus 1075 c~~L~~lp~~~~l~~l-~sL~~L~i~~c~ 1102 (1199)
|. ++.+++ ..+..+ ++|++|++++||
T Consensus 552 N~-l~~~~~-~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 552 NH-IMTSKK-QELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp SC-CCBCCS-SCTTCCCTTCCEEECTTCC
T ss_pred Cc-CCCCCH-HHHHhhhCcCCEEEeeCCC
Confidence 86 555543 267777 689999999986
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.1e-26 Score=272.84 Aligned_cols=389 Identities=21% Similarity=0.206 Sum_probs=158.6
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCcc-ccchhhcccCcc-------------cEEecCCCCcccccc
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNL-------------QTLKLIGCIWIMELP 654 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~lp 654 (1199)
+.+.|++|++++|.+..+|++|+++++|++|++++|.+. .+|.+++++.+| ++|++++|. +..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 357899999999999999999999999999999999887 789999988876 666666655 33444
Q ss_pred hhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCcccccccccccc
Q 000983 655 KDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKL 734 (1199)
Q Consensus 655 ~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l 734 (1199)
.. .++|++|++++|.+. .+|.. +++|++|+++++.. . .++. +
T Consensus 88 ~~---~~~L~~L~l~~n~l~---~lp~~---~~~L~~L~l~~n~l-~--------~l~~--------------------~ 129 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLT---ELPEL---PQSLKSLLVDNNNL-K--------ALSD--------------------L 129 (454)
T ss_dssp SC---CTTCSEEECCSSCCS---SCCCC---CTTCCEEECCSSCC-S--------CCCS--------------------C
T ss_pred CC---cCCCCEEEccCCcCC---ccccc---cCCCcEEECCCCcc-C--------cccC--------------------C
Confidence 31 245666666666443 24432 24455554433210 0 0000 0
Q ss_pred ccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcc
Q 000983 735 SEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCR 814 (1199)
Q Consensus 735 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 814 (1199)
.++|+.|+++.|.... . ..+..+++|+.|+++++....+|.. ..+|+.|++++|.+..
T Consensus 130 --~~~L~~L~L~~n~l~~-l--------------p~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 130 --PPLLEYLGVSNNQLEK-L--------------PELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE 187 (454)
T ss_dssp --CTTCCEEECCSSCCSS-C--------------CCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS
T ss_pred --CCCCCEEECcCCCCCC-C--------------cccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc
Confidence 0244444444443221 0 0234444555555554444444432 2345555555554444
Q ss_pred ccCcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCCcCCCcCeEEEecccccccCCCCCchheeeee
Q 000983 815 ILSLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILV 894 (1199)
Q Consensus 815 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~ 894 (1199)
...++.+++|++|++++| ... .+|..+++|+.|++.+| .+..+|.+
T Consensus 188 l~~~~~l~~L~~L~l~~N-----------------------~l~-~l~~~~~~L~~L~l~~n-~l~~lp~~--------- 233 (454)
T 1jl5_A 188 LPELQNLPFLTAIYADNN-----------------------SLK-KLPDLPLSLESIVAGNN-ILEELPEL--------- 233 (454)
T ss_dssp CCCCTTCTTCCEEECCSS-----------------------CCS-SCCCCCTTCCEEECCSS-CCSSCCCC---------
T ss_pred CccccCCCCCCEEECCCC-----------------------cCC-cCCCCcCcccEEECcCC-cCCccccc---------
Confidence 334445555555555554 322 23333345555555554 22222211
Q ss_pred ccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCC-CCCCcEEEccccccCCCCCcccccccc
Q 000983 895 DNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQI-FAPQKLEISGCDLLSTLPNSEFSQRLQ 973 (1199)
Q Consensus 895 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~l~~L~l~~~~~~~~~p~~~~~~~L~ 973 (1199)
..+++|+.|++.++ .++.+|.. .+++.|++++|.... +|. .+++|+
T Consensus 234 -----------------------------~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~-l~~--~~~~L~ 280 (454)
T 1jl5_A 234 -----------------------------QNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTD-LPE--LPQSLT 280 (454)
T ss_dssp -----------------------------TTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSC-CCC--CCTTCC
T ss_pred -----------------------------CCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccc-cCc--ccCcCC
Confidence 12334444444433 12222221 244555555554322 332 135566
Q ss_pred eeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCC
Q 000983 974 LLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCP 1053 (1199)
Q Consensus 974 ~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~ 1053 (1199)
+|++++|.....+. + .++|+.|++++|.+.. ++.+ .++|++|++++|. ++.+|. .+++|++|++++|.
T Consensus 281 ~L~ls~N~l~~l~~-~--~~~L~~L~l~~N~l~~-i~~~--~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 281 FLDVSENIFSGLSE-L--PPNLYYLNASSNEIRS-LCDL--PPSLEELNVSNNK-LIELPA-----LPPRLERLIASFNH 348 (454)
T ss_dssp EEECCSSCCSEESC-C--CTTCCEEECCSSCCSE-ECCC--CTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC
T ss_pred EEECcCCccCcccC-c--CCcCCEEECcCCcCCc-ccCC--cCcCCEEECCCCc-cccccc-----cCCcCCEEECCCCc
Confidence 66666665332221 1 1456666666665433 2211 1356666666655 444442 14566666666653
Q ss_pred CCCcCCCCCccCCcceEEeccCCCCc--ccCCCCCCCCC-------------CCCCceeecCCCCCCCCCCCCCCCCcCe
Q 000983 1054 KLETLPDEGLPTSLKCLIIASCSGLK--SLGPRGTLKSL-------------NSLKDFYIEDCPLLQSFPEDGLPENLQH 1118 (1199)
Q Consensus 1054 ~l~~l~~~~~~~sL~~L~l~~c~~L~--~lp~~~~l~~l-------------~sL~~L~i~~c~~l~~lp~~~l~~sL~~ 1118 (1199)
++.+|. .+++|++|++++|.... .+|. ++..+ ++|++|++++| .++.+|. +|++|+.
T Consensus 349 -l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~--~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~--iP~sl~~ 420 (454)
T 1jl5_A 349 -LAEVPE--LPQNLKQLHVEYNPLREFPDIPE--SVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPD--IPESVED 420 (454)
T ss_dssp -CSCCCC--CCTTCCEEECCSSCCSSCCCCCT--TCCEEECCC-------------------------------------
T ss_pred -cccccc--hhhhccEEECCCCCCCcCCCChH--HHHhhhhcccccccccccCcCCEEECCCC-cCCcccc--chhhHhh
Confidence 445554 34566666666654322 2333 34333 66777777776 3444443 5566777
Q ss_pred EEccCCc
Q 000983 1119 LVIQNCP 1125 (1199)
Q Consensus 1119 L~i~~c~ 1125 (1199)
|.+.+|.
T Consensus 421 L~~~~~~ 427 (454)
T 1jl5_A 421 LRMNSER 427 (454)
T ss_dssp -------
T ss_pred eeCcCcc
Confidence 7766654
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.2e-26 Score=280.90 Aligned_cols=442 Identities=17% Similarity=0.151 Sum_probs=299.1
Q ss_pred eeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccE
Q 000983 540 TRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRY 618 (1199)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~ 618 (1199)
.+++.+..+.+..++... .++++.|.+. .+.+..+++..|..+++|++|+|++|.++.+ |..|+++++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls-----~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL---PPRTKALSLS-----QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CCEEECTTSCCCSCCTTS---CTTCCEEECC-----SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CcEEEcCCCCCccCCCCC---CCCcCEEECC-----CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 378888888877766432 3789999987 5566667777899999999999999999976 677999999999
Q ss_pred EeccCCCccccchhhcccCcccEEecCCCCccc-ccchhhccccccceeecccccccccccCCCCcCCcccc--CccCeE
Q 000983 619 LDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNL--HNLHVF 695 (1199)
Q Consensus 619 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L--~~L~l~ 695 (1199)
|+|++|.++.+|.. .+++|++|++++|.+.. .+|..+.++++|++|++++|.+.. ..+..+++| ++|++.
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEEEEEE
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-----CchhhhhhceeeEEEee
Confidence 99999999999987 89999999999998554 356899999999999999997643 345556666 999988
Q ss_pred Eeccc-CcCChhhhcCCCCCCCceeeCCccccc--cccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccC
Q 000983 696 RVGSK-SGYRIEELKELPYLTGKLHISKLENAV--NGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQ 772 (1199)
Q Consensus 696 ~~~~~-~~~~~~~l~~l~~L~~~L~l~~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (1199)
++... .+..+..+..+.. ..+.+....+.. ......+..+.+|+.|++++|... .......+..+.
T Consensus 178 ~n~l~~~~~~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~---------~~~l~~~~~~l~ 246 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNT--TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN---------CQRLMTFLSELT 246 (562)
T ss_dssp ESSCCCCSSSCCEEEECCE--EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT---------HHHHHHHHHHHH
T ss_pred cccccccccCcccccccCc--ceEEEEecCccchhhhhhhcccccceEEEecccccccc---------cchHHHHHHHHh
Confidence 75431 3334444444431 122221111111 122233556677888888766321 112223344556
Q ss_pred CCCCCcEEEEeecCCC-----CCCcccccCccCceeEEEEeCccCcccc--Cc-----CCcCCcCeEEecCCCCceecCC
Q 000983 773 PHPNLEELQIFNYFGN-----SLPQWMRDGRLQNLVSLTLKGCTNCRIL--SL-----GQLSSLRVLNIKGMLELEKWPN 840 (1199)
Q Consensus 773 ~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l-----~~l~~L~~L~L~~~~~~~~~~~ 840 (1199)
.+++|+.|++.++... .++.++ ..++|++|++++|.+.... .+ ..++.|+.+++..+..
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~------ 317 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF------ 317 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC------
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee------
Confidence 6677777777654321 122222 2347888888887765333 22 3333333333333321
Q ss_pred CCCcccccccccCCCCCCCcCCC-------cCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCC
Q 000983 841 DEDCRFLGRLKISNCPRLNELPE-------CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTS 913 (1199)
Q Consensus 841 ~~~~~~L~~L~l~~~~~l~~~~~-------~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~ 913 (1199)
.+|. .-.+|+.|++.++.-. .++
T Consensus 318 -------------------~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~------------------------------ 347 (562)
T 3a79_B 318 -------------------LFSKEALYSVFAEMNIKMLSISDTPFI-HMV------------------------------ 347 (562)
T ss_dssp -------------------SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC------------------------------
T ss_pred -------------------ecChhhhhhhhccCcceEEEccCCCcc-ccc------------------------------
Confidence 1111 1245777777765311 000
Q ss_pred CCCCcccccccccccccEEEecCCCCCCCCCCCCCCCcEEEccccccCCCCCc-ccccccceeeecCCCCCc---cccCC
Q 000983 914 DNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGT---LVRAI 989 (1199)
Q Consensus 914 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~-~~~~~L~~L~l~~~~~~~---~~~~l 989 (1199)
. .....++++|++++|.....+|.. ..+++|++|++++|.... .+..+
T Consensus 348 --------------------~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 348 --------------------C--------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp --------------------C--------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred --------------------C--------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 0 011223367777777766655543 567899999999998553 34568
Q ss_pred CCCCCCCEEeecCCCCCCCCCC--CCCCCccceEEEccCCCCCCCcccccCCCC-CCcceEEecCCCCCCcCCCCCcc-C
Q 000983 990 PETSSLNFLILSKISNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSL-TSLNLLSIRGCPKLETLPDEGLP-T 1065 (1199)
Q Consensus 990 ~~l~sL~~L~L~~n~~l~~~~~--~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l-~~L~~L~l~~c~~l~~l~~~~~~-~ 1065 (1199)
..+++|+.|++++|.+...+|. +..+++|++|++++|..-..+ +..+ ++|++|++++|. ++.+|..... +
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~ 473 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-----FRCLPPKVKVLDLHNNR-IMSIPKDVTHLQ 473 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-----GSSCCTTCSEEECCSSC-CCCCCTTTTSSC
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-----hhhhcCcCCEEECCCCc-CcccChhhcCCC
Confidence 8999999999999998875664 588999999999999832222 3344 699999999984 7788865433 8
Q ss_pred CcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCC
Q 000983 1066 SLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1199)
Q Consensus 1066 sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~ 1102 (1199)
+|++|++++|. ++.+|. ..+..+++|+.|++++|+
T Consensus 474 ~L~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 474 ALQELNVASNQ-LKSVPD-GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCSEEECCSSC-CCCCCT-TSTTTCTTCCCEECCSCC
T ss_pred CCCEEECCCCC-CCCCCH-HHHhcCCCCCEEEecCCC
Confidence 99999999986 778887 238999999999999996
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=7.4e-26 Score=269.08 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=84.1
Q ss_pred ccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcce
Q 000983 967 EFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNL 1046 (1199)
Q Consensus 967 ~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~ 1046 (1199)
..+++|++|++++|.....+. +..+++|+.|++++|.+.. ++.+..+++|+.|++++|. ++.++ .+..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNN-ISDIS---PVSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSC-CSCCG---GGGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCc-CCCch---hhccCccCCE
Confidence 345677888888877444433 6677788888888876544 4446777788888888776 44444 2567777777
Q ss_pred EEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCC
Q 000983 1047 LSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPE 1109 (1199)
Q Consensus 1047 L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~ 1109 (1199)
|++++|. +..++...-.++|+.|++++|. +..+++ +..+++|++|++++| .++.+|.
T Consensus 336 L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 336 LFFYNNK-VSDVSSLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp EECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCE-EEECCCB
T ss_pred eECCCCc-cCCchhhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCC-cccCCch
Confidence 7777764 4444332223677777777775 444443 566777777777777 4555543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.3e-25 Score=262.51 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=55.1
Q ss_pred CCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecc
Q 000983 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1199)
Q Consensus 590 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (1199)
++.|+.|+++++.+..+|. +..+++|++|+|++|.++.+|. ++++++|++|++++|.+ ..+|. +.++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-ccChh-hcCCCCCCEEECC
Confidence 3455556666665555553 5556666666666666655554 56666666666665552 33333 5566666666666
Q ss_pred cccccccccCCCCcCCccccCccCeEEe
Q 000983 670 EMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
+|.+. .+|. ++++++|++|++.++
T Consensus 121 ~n~l~---~~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 121 NNQIT---DIDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp SSCCC---CCGG-GTTCTTCSEEEEEEE
T ss_pred CCCCC---CChH-HcCCCCCCEEECCCC
Confidence 65432 2222 555556666655554
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.4e-25 Score=260.47 Aligned_cols=224 Identities=21% Similarity=0.143 Sum_probs=147.8
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhcccccccee
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 666 (1199)
+..+++|++|++++|.++.+| .++.+++|++|+|++|.++.+| ++++++|++|++++|. +..+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEE
Confidence 456777888888888877776 5778888888888888887775 7788888888888877 33444 7778888888
Q ss_pred ecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEE
Q 000983 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~ 746 (1199)
++++|.+.. +| ++.+++|++|++.++.. ++. .+..+++|+.|+++
T Consensus 112 ~L~~N~l~~---l~--~~~l~~L~~L~l~~N~l-~~l-----------------------------~l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 112 NCDTNKLTK---LD--VSQNPLLTYLNCARNTL-TEI-----------------------------DVSHNTQLTELDCH 156 (457)
T ss_dssp ECCSSCCSC---CC--CTTCTTCCEEECTTSCC-SCC-----------------------------CCTTCTTCCEEECT
T ss_pred ECCCCcCCe---ec--CCCCCcCCEEECCCCcc-cee-----------------------------ccccCCcCCEEECC
Confidence 888875543 33 67777777777654321 110 12334456666665
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCCcCe
Q 000983 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRV 826 (1199)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~ 826 (1199)
.|...... .+..+++|+.|+++++....+| + ..+++|+.|++++|.+... .++.+++|++
T Consensus 157 ~n~~~~~~---------------~~~~l~~L~~L~ls~n~l~~l~--l--~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~ 216 (457)
T 3bz5_A 157 LNKKITKL---------------DVTPQTQLTTLDCSFNKITELD--V--SQNKLLNRLNCDTNNITKL-DLNQNIQLTF 216 (457)
T ss_dssp TCSCCCCC---------------CCTTCTTCCEEECCSSCCCCCC--C--TTCTTCCEEECCSSCCSCC-CCTTCTTCSE
T ss_pred CCCccccc---------------ccccCCcCCEEECCCCccceec--c--ccCCCCCEEECcCCcCCee-ccccCCCCCE
Confidence 55322110 2445677888888877766666 3 5578888888888876654 5777888888
Q ss_pred EEecCCCCceecCCCCCcccccccccCCCCCCCcCCCcCCCcCeEEE
Q 000983 827 LNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKI 873 (1199)
Q Consensus 827 L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l 873 (1199)
|++++|.... ++ +..++.|+.+++++|...+..+..+++|+.|.+
T Consensus 217 L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l 261 (457)
T 3bz5_A 217 LDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261 (457)
T ss_dssp EECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred EECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEec
Confidence 8888875444 44 556667777777777554433335555555554
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.3e-24 Score=255.23 Aligned_cols=180 Identities=17% Similarity=0.145 Sum_probs=82.1
Q ss_pred CcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCc
Q 000983 607 PDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKL 686 (1199)
Q Consensus 607 p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l 686 (1199)
|+.+ ...+|++|++++|.+..+|.+|++|++|++|++++|.+.+.+|..++++++|+.+++.+|..
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------- 70 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------- 70 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------
Confidence 4444 35788899999998888888899999999999988887778888888888876666655421
Q ss_pred cccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHH
Q 000983 687 TNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEER 766 (1199)
Q Consensus 687 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 766 (1199)
.++++|++.++. +..++. ..++|+.|++++|.... .+
T Consensus 71 ~~l~~L~l~~~~---------l~~lp~----------------------~~~~L~~L~l~~n~l~~-lp----------- 107 (454)
T 1jl5_A 71 RQAHELELNNLG---------LSSLPE----------------------LPPHLESLVASCNSLTE-LP----------- 107 (454)
T ss_dssp HTCSEEECTTSC---------CSCCCS----------------------CCTTCSEEECCSSCCSS-CC-----------
T ss_pred cCCCEEEecCCc---------cccCCC----------------------CcCCCCEEEccCCcCCc-cc-----------
Confidence 233444433221 000000 01245555555443331 11
Q ss_pred HhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCCcCeEEecCCCCceecCCCCCccc
Q 000983 767 LLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCRF 846 (1199)
Q Consensus 767 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 846 (1199)
. .+++|+.|+++++....+|.. .++|++|++++|.+.....++.+++|++|++++|.... ++.. ...
T Consensus 108 --~---~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~--~~~ 174 (454)
T 1jl5_A 108 --E---LPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDL--PPS 174 (454)
T ss_dssp --C---CCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCC--CTT
T ss_pred --c---ccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCC--ccc
Confidence 0 124666666666555555432 25677777777766553356666777777776664332 2211 235
Q ss_pred ccccccCCCC
Q 000983 847 LGRLKISNCP 856 (1199)
Q Consensus 847 L~~L~l~~~~ 856 (1199)
|+.|++++|.
T Consensus 175 L~~L~L~~n~ 184 (454)
T 1jl5_A 175 LEFIAAGNNQ 184 (454)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCc
Confidence 5555555553
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1e-24 Score=259.45 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=71.7
Q ss_pred cccceeeecCCCCCc-cccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceE
Q 000983 970 QRLQLLALEGCPDGT-LVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLL 1047 (1199)
Q Consensus 970 ~~L~~L~l~~~~~~~-~~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L 1047 (1199)
++|++|++++|.... .+..+..+++|+.|++++|.+....|. +..+++|++|++++|. ++.++. ..+.++++|++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS-RMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG-GGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh-hHhcCcccCCEE
Confidence 455666666665322 344566667777777777766555443 4666777777777765 444432 356666667777
Q ss_pred EecCCCCCCcCCCCCcc--CCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCC
Q 000983 1048 SIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1199)
Q Consensus 1048 ~l~~c~~l~~l~~~~~~--~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~ 1102 (1199)
++++|. ++.++...+. ++|++|++++|. ++.+|. ..+..+++|++|++++|+
T Consensus 353 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 353 DLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-ccccChhhccccccccEEECCCCc-cccCCH-hHhccCCcccEEEccCCC
Confidence 776664 3333222221 556666666553 444443 234556666666666664
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.1e-23 Score=250.54 Aligned_cols=125 Identities=20% Similarity=0.176 Sum_probs=68.9
Q ss_pred CcEEEccccccCCCCCc-ccccccceeeecCCCCCcc-ccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEccC
Q 000983 950 QKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGTL-VRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDC 1026 (1199)
Q Consensus 950 ~~L~l~~~~~~~~~p~~-~~~~~L~~L~l~~~~~~~~-~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c 1026 (1199)
+.|++++|......|.. ..+++|++|++++|..... +..+..+++|++|++++|.+....|. +..+++|++|++++|
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 34444444433333332 3345666666666663333 34556666667777766665444333 356666777777666
Q ss_pred CCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCcc--CCcceEEeccCCC
Q 000983 1027 KDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSG 1077 (1199)
Q Consensus 1027 ~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~l~~c~~ 1077 (1199)
. ++.+++ ..+.++++|++|++++|. ++.+|...+. ++|+.|++++|+.
T Consensus 358 ~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 358 H-IRALGD-QSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp C-CCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred c-ccccCh-hhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 5 333322 356666677777776654 5555543322 5677777776653
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=4e-23 Score=235.84 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=66.3
Q ss_pred ccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceee
Q 000983 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1199)
Q Consensus 588 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 667 (1199)
..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEE
Confidence 467888888888888888765 8888888888888888888876 8888888888888886 44555 578888888888
Q ss_pred cccccc
Q 000983 668 LEEMFW 673 (1199)
Q Consensus 668 l~~n~~ 673 (1199)
+++|.+
T Consensus 117 l~~n~i 122 (347)
T 4fmz_A 117 LNEDNI 122 (347)
T ss_dssp CTTSCC
T ss_pred CcCCcc
Confidence 888754
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.6e-23 Score=246.20 Aligned_cols=355 Identities=14% Similarity=0.090 Sum_probs=201.9
Q ss_pred ccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccC
Q 000983 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1199)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1199)
+..+++|+.|.+. .+.+..++ .|..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| +++++
T Consensus 38 ~~~l~~L~~L~Ls-----~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 38 EEQLATLTSLDCH-----NSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp HHHHTTCCEEECC-----SSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred hhHcCCCCEEEcc-----CCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCC
Confidence 4567778888876 23333332 4778889999999999888876 888899999999999888875 88899
Q ss_pred cccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCc
Q 000983 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGK 717 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~ 717 (1199)
+|++|++++|.+ ..+| +..+++|++|++++|.+.. +| ++.+++|++|++.++...... .+.
T Consensus 107 ~L~~L~L~~N~l-~~l~--~~~l~~L~~L~l~~N~l~~---l~--l~~l~~L~~L~l~~n~~~~~~---~~~-------- 167 (457)
T 3bz5_A 107 KLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLTE---ID--VSHNTQLTELDCHLNKKITKL---DVT-------- 167 (457)
T ss_dssp TCCEEECCSSCC-SCCC--CTTCTTCCEEECTTSCCSC---CC--CTTCTTCCEEECTTCSCCCCC---CCT--------
T ss_pred cCCEEECCCCcC-Ceec--CCCCCcCCEEECCCCccce---ec--cccCCcCCEEECCCCCccccc---ccc--------
Confidence 999999998874 4465 8888899999999886643 33 778888888887654322211 122
Q ss_pred eeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccC
Q 000983 718 LHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDG 797 (1199)
Q Consensus 718 L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 797 (1199)
.+++|+.|++++|..... .+..+++|+.|+++++....++ + +
T Consensus 168 ------------------~l~~L~~L~ls~n~l~~l----------------~l~~l~~L~~L~l~~N~l~~~~--l--~ 209 (457)
T 3bz5_A 168 ------------------PQTQLTTLDCSFNKITEL----------------DVSQNKLLNRLNCDTNNITKLD--L--N 209 (457)
T ss_dssp ------------------TCTTCCEEECCSSCCCCC----------------CCTTCTTCCEEECCSSCCSCCC--C--T
T ss_pred ------------------cCCcCCEEECCCCcccee----------------ccccCCCCCEEECcCCcCCeec--c--c
Confidence 233444555544433210 0333445555555554444432 2 3
Q ss_pred ccCceeEEEEeCccCccccCcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCCcCCCcCeEEEeccc
Q 000983 798 RLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKKCC 877 (1199)
Q Consensus 798 ~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~ 877 (1199)
.+++|+.|++++|.+... +++.+++|+.|++++|..... + ...++.|+.++++++ +|+.|++.+|.
T Consensus 210 ~l~~L~~L~Ls~N~l~~i-p~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n-----------~L~~L~l~~n~ 275 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQT-----------DLLEIDLTHNT 275 (457)
T ss_dssp TCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTC-----------CCSCCCCTTCT
T ss_pred cCCCCCEEECcCCccccc-CccccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCC-----------CCCEEECCCCc
Confidence 355555555555555442 355555555555555533221 1 122333333332221 23333333332
Q ss_pred ccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCC-CCCCCcEEEcc
Q 000983 878 SLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQ-IFAPQKLEISG 956 (1199)
Q Consensus 878 ~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~l~~L~l~~ 956 (1199)
.+..+| ...+++|+.|++++|+.+..+|. ...++.|++++
T Consensus 276 ~~~~~~---------------------------------------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 276 QLIYFQ---------------------------------------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp TCCEEE---------------------------------------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred cCCccc---------------------------------------ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 221111 01123333334444433332221 11223333333
Q ss_pred ccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEccCCCCCCCcccc
Q 000983 957 CDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEG 1036 (1199)
Q Consensus 957 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 1036 (1199)
| ++|++|++++|..... .+..+++|+.|++++|.+.+ ++.|..|.+++|. +.+
T Consensus 317 ~------------~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~----l~g-- 369 (457)
T 3bz5_A 317 N------------PKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNN----FEA-- 369 (457)
T ss_dssp C------------TTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTS----EEE--
T ss_pred c------------ccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCC-------ccccccccccCCc----EEe--
Confidence 3 4667777777764333 36777888888888887543 3455666666655 221
Q ss_pred cCCCCCCcceEEecCCCCCCcCCCC
Q 000983 1037 ALQSLTSLNLLSIRGCPKLETLPDE 1061 (1199)
Q Consensus 1037 ~l~~l~~L~~L~l~~c~~l~~l~~~ 1061 (1199)
...+.+|..+++++|.....+|..
T Consensus 370 -~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 370 -EGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -EEEEEECCCBCCBTTBEEEECCTT
T ss_pred -cceeeecCccccccCcEEEEcChh
Confidence 134566777888887765666653
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.7e-22 Score=234.43 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=75.3
Q ss_pred cCCcccEEecCCCCCcccCcc-cccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhcccccccee
Q 000983 589 QLKYLRLLDLSSSTLTVLPDS-VEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 666 (1199)
.+.+|++|+++++.+..+|.. +..+++|++|+|++|.+..+|. .|+++++|++|++++|.+....|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 367788888888888877765 5778888888888888877754 78888888888888887555555667788888888
Q ss_pred ecccccccccccCCCC-cCCccccCccCeEE
Q 000983 667 ELEEMFWFKCSTLPAG-IGKLTNLHNLHVFR 696 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~~-i~~l~~L~~L~l~~ 696 (1199)
++++|.+ ..+|.. ++++++|++|++.+
T Consensus 123 ~L~~n~l---~~l~~~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 123 VLERNDL---SSLPRGIFHNTPKLTTLSMSN 150 (390)
T ss_dssp ECCSSCC---CCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcc---CcCCHHHhcCCCCCcEEECCC
Confidence 8888754 345554 35566666655543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.1e-22 Score=233.74 Aligned_cols=130 Identities=16% Similarity=0.187 Sum_probs=108.5
Q ss_pred CCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCc-ccccCccccEEeccCCCccccc-hhhcccC
Q 000983 560 NSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLP-NSICNLY 637 (1199)
Q Consensus 560 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~ 637 (1199)
.+++++.+.+. .+.+..+++..|..+++|++|+|++|.+..+|. .|+.+++|++|+|++|.+..+| ..+++++
T Consensus 43 ~l~~l~~l~l~-----~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEE-----SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEec-----CCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 46788888887 455666777888999999999999999997764 7999999999999999999885 4689999
Q ss_pred cccEEecCCCCcccccchh-hccccccceeecccccccccccCCCCcCCccccCccCeEEe
Q 000983 638 NLQTLKLIGCIWIMELPKD-LANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
+|++|++++|. +..+|.. +.++++|++|++++|.+.. ..|..++.+++|++|++.++
T Consensus 118 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCCEEECCCC
Confidence 99999999998 5577766 5899999999999997642 23456888999999988654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.5e-22 Score=246.18 Aligned_cols=104 Identities=21% Similarity=0.276 Sum_probs=67.8
Q ss_pred CCcccEEecCCCCCcccCcc-cccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceee
Q 000983 590 LKYLRLLDLSSSTLTVLPDS-VEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1199)
Q Consensus 590 l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 667 (1199)
+.++++|++++|.+..+|.. +.++++|++|+|++|.+..+|. .|+++++|++|+|++|.+.+..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56677777777777766654 5667777777777777776643 677777777777777765454455567777777777
Q ss_pred cccccccccccCCCC-cCCccccCccCeEE
Q 000983 668 LEEMFWFKCSTLPAG-IGKLTNLHNLHVFR 696 (1199)
Q Consensus 668 l~~n~~~~~~~lp~~-i~~l~~L~~L~l~~ 696 (1199)
|++|.+ ..+|.. ++++++|++|++++
T Consensus 130 L~~n~l---~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 130 LERNDL---SSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CCSSCC---CCCCTTTTTTCTTCCEEECCS
T ss_pred eeCCCC---CCCCHHHhccCCCCCEEEeeC
Confidence 777744 344444 35555555555543
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=8.4e-22 Score=235.46 Aligned_cols=83 Identities=22% Similarity=0.206 Sum_probs=52.9
Q ss_pred ccccceeeecCCCCCccc-cCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcce
Q 000983 969 SQRLQLLALEGCPDGTLV-RAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNL 1046 (1199)
Q Consensus 969 ~~~L~~L~l~~~~~~~~~-~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~ 1046 (1199)
+++|++|++++|.....+ ..+..+++|+.|++++|.+....|. +..+++|++|++++|. ++.++. ..|..+++|++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~ 324 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEE-SVFHSVGNLET 324 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCG-GGBSCGGGCCE
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCH-hHcCCCcccCE
Confidence 456666666666533322 3456667777777777766655443 4667777777777775 555554 35667777777
Q ss_pred EEecCCC
Q 000983 1047 LSIRGCP 1053 (1199)
Q Consensus 1047 L~l~~c~ 1053 (1199)
|++++|+
T Consensus 325 L~l~~N~ 331 (477)
T 2id5_A 325 LILDSNP 331 (477)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 7777765
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.7e-22 Score=244.60 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=109.0
Q ss_pred CCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCccccEEeccCCCccccch-hhcccC
Q 000983 560 NSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLPN-SICNLY 637 (1199)
Q Consensus 560 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~ 637 (1199)
.+++++.+.+. .+.+..+++..|..+++|++|+|++|.+..+| ..|+.+++|++|+|++|.+..+|. .|++++
T Consensus 49 ~l~~l~~l~l~-----~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEES-----SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEee-----CCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 45778888876 45667777888999999999999999999766 489999999999999999998865 579999
Q ss_pred cccEEecCCCCcccccchh-hccccccceeecccccccccccCCCCcCCccccCccCeEEe
Q 000983 638 NLQTLKLIGCIWIMELPKD-LANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
+|++|+|++|. +..+|.. +.++++|++|++++|.+.. ..|..++.+++|++|+++++
T Consensus 124 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 124 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTTS
T ss_pred CCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcCC
Confidence 99999999998 4566665 5899999999999997642 34556899999999988654
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=5.2e-22 Score=226.65 Aligned_cols=125 Identities=24% Similarity=0.283 Sum_probs=93.9
Q ss_pred ccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccC
Q 000983 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1199)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1199)
+..+++++.|.+. .+.+..+. .+..+++|++|++++|.+..+|. +..+++|++|++++|.++.+| .+.+++
T Consensus 40 ~~~l~~L~~L~l~-----~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVA-----GEKVASIQ--GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECC-----SSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred chhcccccEEEEe-----CCccccch--hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 3456777777776 22222221 26789999999999999998877 899999999999999998886 589999
Q ss_pred cccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEE
Q 000983 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
+|++|++++|. +..+|. +..+++|++|++++|... .. +..++.+++|++|++.+
T Consensus 111 ~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~--~~-~~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNL--SD-LSPLSNMTGLNYLTVTE 164 (347)
T ss_dssp TCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTC--CC-CGGGTTCTTCCEEECCS
T ss_pred cCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCc--cc-ccchhhCCCCcEEEecC
Confidence 99999999988 555665 889999999999988432 22 23366666666666543
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=223.22 Aligned_cols=292 Identities=18% Similarity=0.148 Sum_probs=210.3
Q ss_pred CCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccEEeccCCCccccch-hhcccCcc
Q 000983 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNL 639 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 639 (1199)
+.++.|.+. .+.+..+.+..|..+++|++|+|++|.+..+ |..|+++++|++|+|++|.++.+|. .|+++++|
T Consensus 32 ~~l~~L~L~-----~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLG-----KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECC-----SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECC-----CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 577888876 4455555566788899999999999988865 7788999999999999999988876 47889999
Q ss_pred cEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCcee
Q 000983 640 QTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLH 719 (1199)
Q Consensus 640 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~ 719 (1199)
++|++++|.+....|..+..+++|++|++++|.+..+ .|..++.+++|++|++.++ .........+..+++|+ .|.
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~-~L~ 182 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI--SHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLI-VLR 182 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE--CTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCC-EEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCcccee--ChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCc-EEe
Confidence 9999999887777778888999999999998866532 3567888899999988774 34444555677777776 555
Q ss_pred eCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCcc
Q 000983 720 ISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRL 799 (1199)
Q Consensus 720 l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l 799 (1199)
+..... .......+..+.+|+.|+++.+......+ .......+|+.|+++++....+|.... ..+
T Consensus 183 l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l 247 (477)
T 2id5_A 183 LRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMT-------------PNCLYGLNLTSLSITHCNLTAVPYLAV-RHL 247 (477)
T ss_dssp EESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEEC-------------TTTTTTCCCSEEEEESSCCCSCCHHHH-TTC
T ss_pred CCCCcC-cEeChhhcccCcccceeeCCCCccccccC-------------cccccCccccEEECcCCcccccCHHHh-cCc
Confidence 543221 12233456777888888888765432211 122233488999998887777775422 568
Q ss_pred CceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecC-CCCCcccccccccCCCCCCCcCCC---cCCCcCeEEE
Q 000983 800 QNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKI 873 (1199)
Q Consensus 800 ~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l 873 (1199)
++|+.|+|++|.+.... .+..+++|+.|+|++|......+ .+..++.|+.|++++|......+. .+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 88999999988877655 57888899999998887665544 456778888888888865433222 3456777776
Q ss_pred eccc
Q 000983 874 KKCC 877 (1199)
Q Consensus 874 ~~c~ 877 (1199)
.+++
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=2.8e-19 Score=202.21 Aligned_cols=97 Identities=23% Similarity=0.298 Sum_probs=77.7
Q ss_pred CcccEEecCCCCCcccCcccccCccccEEeccCCCccccc-hhhcccCcccEEecCCCCcccccchhhccccccceeecc
Q 000983 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (1199)
..|++++++++.++.+|..+. ++|++|+|++|.+..+| ..|+++++|++|++++|.+....|..+.++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999998774 68999999999999885 579999999999999998666668889999999999999
Q ss_pred cccccccccCCCCcCCccccCccCe
Q 000983 670 EMFWFKCSTLPAGIGKLTNLHNLHV 694 (1199)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l 694 (1199)
+|.+ ..+|..+. ++|++|++
T Consensus 111 ~n~l---~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 111 KNHL---VEIPPNLP--SSLVELRI 130 (332)
T ss_dssp SSCC---CSCCSSCC--TTCCEEEC
T ss_pred CCcC---CccCcccc--ccCCEEEC
Confidence 8854 34554433 34444443
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2e-20 Score=210.12 Aligned_cols=226 Identities=25% Similarity=0.338 Sum_probs=176.0
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
....+++|+|++|.+..+|..++++++|++|+|++|.+..+|..++++++|++|++++|.+ ..+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 3588999999999999999999999999999999999999999999999999999999984 489999999999999999
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEec
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 748 (1199)
++|... +.+|..++... + ...+..+.+|+.|++++|
T Consensus 158 ~~n~~~--~~~p~~~~~~~------~------------------------------------~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 158 RACPEL--TELPEPLASTD------A------------------------------------SGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp EEETTC--CCCCSCSEEEC-------------------------------------------CCCEEESTTCCEEEEEEE
T ss_pred CCCCCc--cccChhHhhcc------c------------------------------------hhhhccCCCCCEEECcCC
Confidence 998543 56666554300 0 001233445666666666
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCe
Q 000983 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRV 826 (1199)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~ 826 (1199)
... .. +..+..+++|+.|++++|....+|..+ ..+++|+.|+|++|...... .++.+++|++
T Consensus 194 ~l~-~l-------------p~~l~~l~~L~~L~L~~N~l~~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 194 GIR-SL-------------PASIANLQNLKSLKIRNSPLSALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp CCC-CC-------------CGGGGGCTTCCEEEEESSCCCCCCGGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CcC-cc-------------hHhhcCCCCCCEEEccCCCCCcCchhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 443 11 134556778888888888777888776 56889999999998877766 6788899999
Q ss_pred EEecCCCCceecC-CCCCcccccccccCCCCCCCcCCCcCCCcCeEEEec
Q 000983 827 LNIKGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKK 875 (1199)
Q Consensus 827 L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~ 875 (1199)
|++++|.....++ .+..++.|+.|++++|+.++.+|..+.+|..|....
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 9999988777776 457788888888999888888888666655544443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=2.6e-19 Score=202.30 Aligned_cols=98 Identities=31% Similarity=0.336 Sum_probs=78.6
Q ss_pred CCcccEEecCCCCCcccCcccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 590 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
..+|++++++++.++.+|..+. .+|++|+|++|.++.+|. .|+++++|++|++++|.+....|..+..+++|++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3478999999999999998765 689999999999998876 7999999999999999866666889999999999999
Q ss_pred ccccccccccCCCCcCCccccCccCe
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHV 694 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l 694 (1199)
++|.+ ..+|..+. ++|++|++
T Consensus 108 s~n~l---~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 108 SKNQL---KELPEKMP--KTLQELRV 128 (330)
T ss_dssp CSSCC---SBCCSSCC--TTCCEEEC
T ss_pred CCCcC---CccChhhc--ccccEEEC
Confidence 99854 34555443 34444444
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.2e-20 Score=208.62 Aligned_cols=231 Identities=17% Similarity=0.189 Sum_probs=146.7
Q ss_pred HhccCCcccEEecCC-CCCc-ccCcccccCccccEEeccCCCcc-ccchhhcccCcccEEecCCCCcccccchhhccccc
Q 000983 586 IFHQLKYLRLLDLSS-STLT-VLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVK 662 (1199)
Q Consensus 586 ~~~~l~~Lr~L~L~~-~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 662 (1199)
.|..+++|++|+|++ |.+. .+|..|+++++|++|+|++|.+. .+|..|+++++|++|++++|.+.+.+|..+..+++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 455666677777763 5555 56666666777777777776666 56666667777777777766655566666666777
Q ss_pred cceeecccccccccccCCCCcCCcc-ccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccc
Q 000983 663 LRNLELEEMFWFKCSTLPAGIGKLT-NLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLH 741 (1199)
Q Consensus 663 L~~L~l~~n~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~ 741 (1199)
|++|++++|.+. +.+|..+++++ +|++|++.++. ..+..+.. +..+. |+
T Consensus 151 L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~--------------------------~~~l~-L~ 200 (313)
T 1ogq_A 151 LVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT--------------------------FANLN-LA 200 (313)
T ss_dssp CCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSSE-EEEECCGG--------------------------GGGCC-CS
T ss_pred CCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCCe-eeccCChH--------------------------HhCCc-cc
Confidence 777777666543 34566666665 66666665432 11111111 11122 55
Q ss_pred eeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcC
Q 000983 742 KLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLG 819 (1199)
Q Consensus 742 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~ 819 (1199)
.|+++.|..... ....+..+++|+.|+++++.....+..+ ..+++|+.|+|++|.+.... .++
T Consensus 201 ~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 201 FVDLSRNMLEGD-------------ASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EEECCSSEEEEC-------------CGGGCCTTSCCSEEECCSSEECCBGGGC--CCCTTCCEEECCSSCCEECCCGGGG
T ss_pred EEECcCCcccCc-------------CCHHHhcCCCCCEEECCCCceeeecCcc--cccCCCCEEECcCCcccCcCChHHh
Confidence 555554432211 1234566778888888766555444444 45788888888888877444 678
Q ss_pred CcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcC
Q 000983 820 QLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNEL 861 (1199)
Q Consensus 820 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 861 (1199)
.+++|++|++++|.....+|....++.|+.+++++|+.+...
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCC
Confidence 888899999998877777777777788888888888765443
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=3.2e-20 Score=207.35 Aligned_cols=105 Identities=25% Similarity=0.307 Sum_probs=94.2
Q ss_pred CcccEEecCCCCCc---ccCcccccCccccEEeccC-CCcc-ccchhhcccCcccEEecCCCCcccccchhhccccccce
Q 000983 591 KYLRLLDLSSSTLT---VLPDSVEELKLLRYLDLSR-TEIK-VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 665 (1199)
..+++|+|++|.+. .+|..|+++++|++|+|++ |.+. .+|..|+++++|++|++++|.+.+.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999999998 6899999999999999995 8887 78999999999999999999977799999999999999
Q ss_pred eecccccccccccCCCCcCCccccCccCeEEe
Q 000983 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
|++++|.+. +.+|..++.+++|++|++.++
T Consensus 130 L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 130 LDFSYNALS--GTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EECCSSEEE--SCCCGGGGGCTTCCEEECCSS
T ss_pred EeCCCCccC--CcCChHHhcCCCCCeEECcCC
Confidence 999999775 367888888999999888654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=6.3e-21 Score=235.11 Aligned_cols=232 Identities=15% Similarity=0.075 Sum_probs=139.1
Q ss_pred hHHHHhccCCcccEEecCCCCCc-ccCcccccC--ccccEEeccCCC-cc--ccchhhcccCcccEEecCCCCcccc---
Q 000983 582 ALDKIFHQLKYLRLLDLSSSTLT-VLPDSVEEL--KLLRYLDLSRTE-IK--VLPNSICNLYNLQTLKLIGCIWIME--- 652 (1199)
Q Consensus 582 ~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~l--~~Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~--- 652 (1199)
.+...+..+++|++|+|++|.+. ..+..+..+ .+|++|+|++|. +. .++..+.++++|++|+|++|.+...
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred HHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence 34455567888888888888776 334445553 348888888875 22 3444556788888888888875433
Q ss_pred -cchhhccccccceeecccccccc--cccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccc
Q 000983 653 -LPKDLANLVKLRNLELEEMFWFK--CSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNG 729 (1199)
Q Consensus 653 -lp~~i~~L~~L~~L~l~~n~~~~--~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~ 729 (1199)
++..+..+++|++|++++|.+.. ...++..+.++++|++|++.++... + ...
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~-l~~----------------------- 237 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-E-LVG----------------------- 237 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-G-GHH-----------------------
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-H-HHH-----------------------
Confidence 44455678888888888876541 1233444456677777776543211 1 111
Q ss_pred cccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeC
Q 000983 730 GEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKG 809 (1199)
Q Consensus 730 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~ 809 (1199)
.+..+++|+.|.++....... .......+..+++|+.|.+++.....+|..+ ..+++|++|+|++
T Consensus 238 ---~~~~~~~L~~L~l~~~~~~~~----------~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~--~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 238 ---FFKAAANLEEFCGGSLNEDIG----------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILF--PFAAQIRKLDLLY 302 (592)
T ss_dssp ---HHHHCTTCCEEEECBCCCCTT----------CTTSSSCCCCCTTCCEEEETTCCTTTGGGGG--GGGGGCCEEEETT
T ss_pred ---HHhhhhHHHhhcccccccccc----------hHHHHHHhhccccccccCccccchhHHHHHH--hhcCCCcEEecCC
Confidence 233344555665553211100 0011234566778888888876666777766 5688999999998
Q ss_pred ccCcccc---CcCCcCCcCeEEecCCCCceecCCC-CCcccccccccC
Q 000983 810 CTNCRIL---SLGQLSSLRVLNIKGMLELEKWPND-EDCRFLGRLKIS 853 (1199)
Q Consensus 810 ~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~ 853 (1199)
|...... .+..+++|++|+++++.....++.+ ..++.|+.|+++
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 8743332 3578889999998843221111111 224455555555
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=5e-21 Score=235.96 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=72.2
Q ss_pred HHHHhccCCcccEEecCCCCC----cccCcccc------------cCccccEEeccCCCcc-ccchhhccc--CcccEEe
Q 000983 583 LDKIFHQLKYLRLLDLSSSTL----TVLPDSVE------------ELKLLRYLDLSRTEIK-VLPNSICNL--YNLQTLK 643 (1199)
Q Consensus 583 ~~~~~~~l~~Lr~L~L~~~~l----~~lp~~i~------------~l~~Lr~L~L~~~~i~-~lp~~i~~L--~~L~~L~ 643 (1199)
++..+..+++|+.|+|+++.. ..+|..++ .+++|++|+|++|.+. ..+..++.+ .+|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 456677888899999987542 12333322 7889999999999876 335556664 4599999
Q ss_pred cCCCCcc--cccchhhccccccceeeccccccccccc--CCCCcCCccccCccCeE
Q 000983 644 LIGCIWI--MELPKDLANLVKLRNLELEEMFWFKCST--LPAGIGKLTNLHNLHVF 695 (1199)
Q Consensus 644 L~~~~~l--~~lp~~i~~L~~L~~L~l~~n~~~~~~~--lp~~i~~l~~L~~L~l~ 695 (1199)
+++|... ..++..+..+++|++|++++|.+...+. ++.....+++|++|+++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 200 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY 200 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECT
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEee
Confidence 9988632 2234444578999999999886532110 11222345566666554
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=7.8e-18 Score=203.33 Aligned_cols=93 Identities=26% Similarity=0.280 Sum_probs=74.7
Q ss_pred ccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceee
Q 000983 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1199)
Q Consensus 588 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 667 (1199)
+...++++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|+
T Consensus 37 c~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 37 CLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELS 107 (622)
T ss_dssp HHHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEE
T ss_pred ccCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEE
Confidence 334569999999999999998876 899999999999999987 67999999999998 567886 778999999
Q ss_pred cccccccccccCCCCcCCccccCccCeE
Q 000983 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVF 695 (1199)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~ 695 (1199)
+++|.+. .+|. .+++|++|++.
T Consensus 108 Ls~N~l~---~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 108 IFSNPLT---HLPA---LPSGLCKLWIF 129 (622)
T ss_dssp ECSCCCC---CCCC---CCTTCCEEECC
T ss_pred CcCCcCC---CCCC---CCCCcCEEECC
Confidence 9998553 3444 34555555543
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=2.3e-18 Score=194.71 Aligned_cols=282 Identities=16% Similarity=0.163 Sum_probs=176.9
Q ss_pred ceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCcccc
Q 000983 539 ETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLR 617 (1199)
Q Consensus 539 ~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr 617 (1199)
..+.+.+..+.+..++... .++++.|.+. .+.+..+.+..|..+++|++|+|++|.++.+ |..|+++++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQ-----NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECC-----CCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 3455666655555554322 3578888776 3445555566788888888888888888865 67788888888
Q ss_pred EEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEe
Q 000983 618 YLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 618 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
+|+|++|.++.+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+...+..|..++.+ +|+.|++.++
T Consensus 106 ~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 88888888888887766 78888888888744433445788888888888888765444556667777 8888887654
Q ss_pred cccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCC
Q 000983 698 GSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNL 777 (1199)
Q Consensus 698 ~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 777 (1199)
.. .. ++ ..+ .++|+.|++++|......+ ..+..+++|
T Consensus 183 ~l-~~--------l~-------------------~~~--~~~L~~L~l~~n~i~~~~~-------------~~l~~l~~L 219 (332)
T 2ft3_A 183 KL-TG--------IP-------------------KDL--PETLNELHLDHNKIQAIEL-------------EDLLRYSKL 219 (332)
T ss_dssp BC-SS--------CC-------------------SSS--CSSCSCCBCCSSCCCCCCT-------------TSSTTCTTC
T ss_pred CC-Cc--------cC-------------------ccc--cCCCCEEECCCCcCCccCH-------------HHhcCCCCC
Confidence 21 11 00 000 1356666666654432221 245556677
Q ss_pred cEEEEeecCCCCCCc-ccccCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCceecC-CCCC------ccccc
Q 000983 778 EELQIFNYFGNSLPQ-WMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWP-NDED------CRFLG 848 (1199)
Q Consensus 778 ~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~------~~~L~ 848 (1199)
+.|+++++....++. ++ ..+++|+.|++++|.+.... .++.+++|++|++++|....... .+.. ...++
T Consensus 220 ~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp SCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CEEECCCCcCCcCChhHh--hCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 777777665555544 34 45677777777777666544 56677777777777765433222 1111 34566
Q ss_pred ccccCCCCCC--CcCCC---cCCCcCeEEEecc
Q 000983 849 RLKISNCPRL--NELPE---CMPNLTVMKIKKC 876 (1199)
Q Consensus 849 ~L~l~~~~~l--~~~~~---~~~~L~~L~l~~c 876 (1199)
.+++.+|+.. ...|. .+++|+.+.+.++
T Consensus 298 ~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6777777654 22222 3455666666554
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.4e-18 Score=196.45 Aligned_cols=281 Identities=16% Similarity=0.119 Sum_probs=173.5
Q ss_pred eeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccE
Q 000983 540 TRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRY 618 (1199)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~ 618 (1199)
.+.+.+..+.+..++.. -.+.++.|.+. .+.+..+++..|..+++|++|+|++|.+..+ |..|+++++|++
T Consensus 33 l~~l~~~~~~l~~lp~~---~~~~l~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKD---LPPDTALLDLQ-----NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp TTEEECTTSCCCSCCCS---CCTTCCEEECC-----SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CeEEEecCCCccccCcc---CCCCCeEEECC-----CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 34444444444444321 23567777776 3445555555677888888888888888865 777888888888
Q ss_pred EeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEec
Q 000983 619 LDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 619 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~ 698 (1199)
|+|++|.++.+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+...+..|..++.+++|++|++.++.
T Consensus 105 L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 105 LYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp EECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 8888888888887665 68888888888755555556788888888888888765444556677778888888776532
Q ss_pred ccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCc
Q 000983 699 SKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLE 778 (1199)
Q Consensus 699 ~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 778 (1199)
.. . ++ ..+ .++|+.|+++.|...... ...+..+++|+
T Consensus 183 l~-~--------l~-------------------~~~--~~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~ 219 (330)
T 1xku_A 183 IT-T--------IP-------------------QGL--PPSLTELHLDGNKITKVD-------------AASLKGLNNLA 219 (330)
T ss_dssp CC-S--------CC-------------------SSC--CTTCSEEECTTSCCCEEC-------------TGGGTTCTTCC
T ss_pred cc-c--------CC-------------------ccc--cccCCEEECCCCcCCccC-------------HHHhcCCCCCC
Confidence 11 0 00 000 145666666665443211 13455667777
Q ss_pred EEEEeecCCCCCCc-ccccCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCceecCC-CC------Ccccccc
Q 000983 779 ELQIFNYFGNSLPQ-WMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPN-DE------DCRFLGR 849 (1199)
Q Consensus 779 ~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~-~~------~~~~L~~ 849 (1199)
.|+++++....++. ++ ..+++|+.|+|++|.+.... .+..+++|++|++++|......+. +. ....+..
T Consensus 220 ~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~ 297 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297 (330)
T ss_dssp EEECCSSCCCEECTTTG--GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred EEECCCCcCceeChhhc--cCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccc
Confidence 77777665555543 34 45677777777777766554 566777777777777754332221 11 1345666
Q ss_pred cccCCCCCCC--cCCC---cCCCcCeEEEec
Q 000983 850 LKISNCPRLN--ELPE---CMPNLTVMKIKK 875 (1199)
Q Consensus 850 L~l~~~~~l~--~~~~---~~~~L~~L~l~~ 875 (1199)
+++++|+... ..|. .+++++.+++.+
T Consensus 298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp EECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred eEeecCcccccccCccccccccceeEEEecc
Confidence 7777776532 1222 344555665554
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=7.8e-18 Score=189.02 Aligned_cols=229 Identities=22% Similarity=0.240 Sum_probs=138.3
Q ss_pred CCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCceecC-CCCCcccccccc
Q 000983 774 HPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLK 851 (1199)
Q Consensus 774 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~ 851 (1199)
.++++.|+++++....+|..+ ..+++|++|+|++|.+.... .++.+++|++|++++|... .++ .+.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l--~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~--------- 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQA--FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIA--------- 147 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCG--GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGG---------
T ss_pred ccceeEEEccCCCchhcChhh--hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHh---------
Confidence 468888999888878888877 45888888888888877544 6788888888888887543 222 111
Q ss_pred cCCCCCCCcCCCcCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccE
Q 000983 852 ISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLE 931 (1199)
Q Consensus 852 l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ 931 (1199)
.+++|+.|++.+|..+..+|..-. .
T Consensus 148 ------------~l~~L~~L~L~~n~~~~~~p~~~~-------------------------------------------~ 172 (328)
T 4fcg_A 148 ------------SLNRLRELSIRACPELTELPEPLA-------------------------------------------S 172 (328)
T ss_dssp ------------GCTTCCEEEEEEETTCCCCCSCSE-------------------------------------------E
T ss_pred ------------cCcCCCEEECCCCCCccccChhHh-------------------------------------------h
Confidence 344555665555544443332100 0
Q ss_pred EEecCCCCCCCCCCCCCCCcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCC
Q 000983 932 MKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPR 1011 (1199)
Q Consensus 932 L~l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~ 1011 (1199)
..+ . .....+++|++|++++|.....+..+..+++|++|++++|.+....+.
T Consensus 173 ~~~--------------------~--------~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 173 TDA--------------------S--------GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp EC---------------------C--------CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred ccc--------------------h--------hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 000 0 000123445555555555444445555666677777777665543334
Q ss_pred CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCC-ccCCcceEEeccCCCCcccCCCCCCCCC
Q 000983 1012 WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG-LPTSLKCLIIASCSGLKSLGPRGTLKSL 1090 (1199)
Q Consensus 1012 ~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~sL~~L~l~~c~~L~~lp~~~~l~~l 1090 (1199)
+..+++|++|++++|.....+| ..+.++++|++|++++|+.++.+|... -.++|+.|+|++|+.++.+|. ++.++
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L 300 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYP--PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQL 300 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCC--CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGS
T ss_pred hccCCCCCEEECcCCcchhhhH--HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhc
Confidence 5666677777777766555555 356666777777777766666665431 126666777776666666666 66777
Q ss_pred CCCCceeecCC
Q 000983 1091 NSLKDFYIEDC 1101 (1199)
Q Consensus 1091 ~sL~~L~i~~c 1101 (1199)
++|+.+++..+
T Consensus 301 ~~L~~l~l~~~ 311 (328)
T 4fcg_A 301 PANCIILVPPH 311 (328)
T ss_dssp CTTCEEECCGG
T ss_pred cCceEEeCCHH
Confidence 77777766654
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.5e-16 Score=190.16 Aligned_cols=134 Identities=28% Similarity=0.283 Sum_probs=71.6
Q ss_pred CCCcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEccCC
Q 000983 948 APQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCK 1027 (1199)
Q Consensus 948 ~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~c~ 1027 (1199)
+++.|++++|... .+| ..+++|+.|++++|.....+.. +++|+.|++++|.+. .+|. .+++|++|++++|.
T Consensus 162 ~L~~L~L~~N~l~-~l~--~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 162 ELCKLWAYNNQLT-SLP--MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNR 232 (622)
T ss_dssp TCCEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCC-CCc--ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC--CCCCCCEEEccCCc
Confidence 3455555555422 233 2345666666666654333322 255666666666533 3332 23566666666654
Q ss_pred CCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCC
Q 000983 1028 DLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1199)
Q Consensus 1028 ~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~ 1102 (1199)
++.+| ..+++|+.|++++|. ++.+|. .+++|+.|++++|. ++.+|. .+.++++|+.|++++|+
T Consensus 233 -L~~lp-----~~l~~L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N~-L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 233 -LTSLP-----VLPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-LTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -CSCCC-----CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CCSCCG--GGGGSCTTCEEECCSCC
T ss_pred -cCcCC-----CCCCcCcEEECCCCC-CCcCCc--ccccCcEEeCCCCC-CCcCCH--HHhhccccCEEEecCCC
Confidence 44444 234566666666653 555554 34566666666653 555555 56666666666666664
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=8.4e-20 Score=217.41 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=70.1
Q ss_pred ceeEEEEEeccCCCCccc-cccCCCCccEEecccCCCcccchh----hhHHHHhccCCcccEEecCCCCCcc-cCccc-c
Q 000983 539 ETRHVSLLCKHVEKPALS-VVENSKKLRTFLVPSFGEHLKDFG----RALDKIFHQLKYLRLLDLSSSTLTV-LPDSV-E 611 (1199)
Q Consensus 539 ~~r~lsl~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~----~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i-~ 611 (1199)
..+++.+.++.+...... .+..+++|++|.+. .+.+. ..++..+..+++|++|+|++|.+.. .+..+ .
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-----~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-----DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-----SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEcc-----CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 455566655554432221 13445556665554 11111 1234445555666666666665542 11111 2
Q ss_pred cCc----cccEEeccCCCcc-----ccchhhcccCcccEEecCCCCcccccchhhcc-----ccccceeecccccccccc
Q 000983 612 ELK----LLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCIWIMELPKDLAN-----LVKLRNLELEEMFWFKCS 677 (1199)
Q Consensus 612 ~l~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~-----L~~L~~L~l~~n~~~~~~ 677 (1199)
.+. +|++|+|++|.+. .+|..+.++++|++|++++|.+....+..+.. .++|++|++++|.+....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 233 4666666666555 34555566666666666665533222222221 335666666655443211
Q ss_pred --cCCCCcCCccccCccCeE
Q 000983 678 --TLPAGIGKLTNLHNLHVF 695 (1199)
Q Consensus 678 --~lp~~i~~l~~L~~L~l~ 695 (1199)
.++..+..+++|++|++.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHhhCCCCCEEECc
Confidence 122333344455555444
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=3.6e-19 Score=219.51 Aligned_cols=212 Identities=18% Similarity=0.077 Sum_probs=111.4
Q ss_pred HHHhccCCcccEEecCCCCCc-ccCcccc-cCccccEEeccCC-Cccc--cchhhcccCcccEEecCCCCcccccchhh-
Q 000983 584 DKIFHQLKYLRLLDLSSSTLT-VLPDSVE-ELKLLRYLDLSRT-EIKV--LPNSICNLYNLQTLKLIGCIWIMELPKDL- 657 (1199)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~-~l~~Lr~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i- 657 (1199)
...+..+++|+.|+|++|.+. ..+..+. .+++|++|+|++| .+.. ++..+.++++|++|++++|.+....+..+
T Consensus 98 ~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 344456667777777776665 2233343 4667777777776 4443 45555567777777777766332222222
Q ss_pred ---ccccccceeeccccc--ccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCcccccccccc
Q 000983 658 ---ANLVKLRNLELEEMF--WFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEA 732 (1199)
Q Consensus 658 ---~~L~~L~~L~l~~n~--~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~ 732 (1199)
..+++|++|++++|. +. ...++..+.++++|++|++.++....+ ...
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~~~~~L~~L~L~~~~~~~~---------------------------l~~ 229 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVS-FSALERLVTRCPNLKSLKLNRAVPLEK---------------------------LAT 229 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCC-HHHHHHHHHHCTTCCEEECCTTSCHHH---------------------------HHH
T ss_pred HHhhcCCcCcEEEecccCCcCC-HHHHHHHHHhCCCCcEEecCCCCcHHH---------------------------HHH
Confidence 345567777776653 10 011111122345555555543211111 122
Q ss_pred ccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEE-EEeecCCCCCCcccccCccCceeEEEEeCcc
Q 000983 733 KLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEEL-QIFNYFGNSLPQWMRDGRLQNLVSLTLKGCT 811 (1199)
Q Consensus 733 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~ 811 (1199)
.+..+++|+.|.+..+.... .......+...+..+++|+.| .+.+.....+|..+ ..+++|+.|+|++|.
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~-------~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEV-------RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY--SVCSRLTTLNLSYAT 300 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCC-------CHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH--HHHTTCCEEECTTCC
T ss_pred HHhcCCcceEcccccccCcc-------chhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH--HhhCCCCEEEccCCC
Confidence 23344556666654332110 011223344456677788887 33333333444443 357888888888887
Q ss_pred Ccccc---CcCCcCCcCeEEecCC
Q 000983 812 NCRIL---SLGQLSSLRVLNIKGM 832 (1199)
Q Consensus 812 ~~~~~---~l~~l~~L~~L~L~~~ 832 (1199)
+.... .+..+++|++|++++|
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 43322 3567788888888876
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=1.3e-20 Score=224.35 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=74.0
Q ss_pred CCccEEecccCCCcccchhh-hHHHHhccCCcccEEecCCCCCc-----ccCcccccCccccEEeccCCCcccc-chhh-
Q 000983 562 KKLRTFLVPSFGEHLKDFGR-ALDKIFHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIKVL-PNSI- 633 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i- 633 (1199)
+.++.|.+. .+.+.. .....+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+... +..+
T Consensus 3 ~~l~~L~Ls-----~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQ-----CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEE-----SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhh-----hcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 456677775 222322 23445777888888888888876 4567777888888888888887642 3333
Q ss_pred cccC----cccEEecCCCCccc----ccchhhccccccceeeccccccc
Q 000983 634 CNLY----NLQTLKLIGCIWIM----ELPKDLANLVKLRNLELEEMFWF 674 (1199)
Q Consensus 634 ~~L~----~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~n~~~ 674 (1199)
..+. +|++|++++|.+.. .+|..+..+++|++|++++|.+.
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 3355 68888888887542 56777888888888888887653
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=4.3e-18 Score=190.66 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=49.7
Q ss_pred cchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccch
Q 000983 577 KDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPK 655 (1199)
Q Consensus 577 ~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 655 (1199)
+.+...+...+..+++|++|+|++|.++.++ ..|+++++|++|+|++|.+..++. +..+++|++|++++|. +..+|
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-
Confidence 3445555555556666666666666666443 456666666666666666655443 5666666666666654 22222
Q ss_pred hhccccccceeecccc
Q 000983 656 DLANLVKLRNLELEEM 671 (1199)
Q Consensus 656 ~i~~L~~L~~L~l~~n 671 (1199)
.+++|++|++++|
T Consensus 97 ---~~~~L~~L~l~~n 109 (317)
T 3o53_A 97 ---VGPSIETLHAANN 109 (317)
T ss_dssp ---ECTTCCEEECCSS
T ss_pred ---CCCCcCEEECCCC
Confidence 2345555555554
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=186.87 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=162.5
Q ss_pred CcccEEecCCCCCcccCc-ccccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchh-hccccccceee
Q 000983 591 KYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLE 667 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 667 (1199)
++|++|+|++|.++.+|. .+.++++|++|+|++|.++.+ |..|+++++|++|++++|.+ ..+|.. +.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEE
Confidence 589999999999998876 799999999999999999987 45799999999999999984 456655 89999999999
Q ss_pred cccccccccccCCC--CcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEE
Q 000983 668 LEEMFWFKCSTLPA--GIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVF 745 (1199)
Q Consensus 668 l~~n~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l 745 (1199)
+++|.+ ..+|. .++.+++|++|++.+++......... +..+++|+.|++
T Consensus 131 L~~n~l---~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------------~~~l~~L~~L~l 181 (353)
T 2z80_A 131 LLGNPY---KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD--------------------------FAGLTFLEELEI 181 (353)
T ss_dssp CTTCCC---SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT--------------------------TTTCCEEEEEEE
T ss_pred CCCCCC---cccCchhhhccCCCCcEEECCCCccccccCHHH--------------------------ccCCCCCCEEEC
Confidence 999965 45665 68899999999998864333222222 334456666777
Q ss_pred EecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc-----CcCC
Q 000983 746 EWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-----SLGQ 820 (1199)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-----~l~~ 820 (1199)
+.|...... +..+..+++|+.|+++++....+|..+. ..+++|+.|++++|.+.... ....
T Consensus 182 ~~n~l~~~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 182 DASDLQSYE-------------PKSLKSIQNVSHLILHMKQHILLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp EETTCCEEC-------------TTTTTTCSEEEEEEEECSCSTTHHHHHH-HHTTTEEEEEEESCBCTTCCCC------C
T ss_pred CCCCcCccC-------------HHHHhccccCCeecCCCCccccchhhhh-hhcccccEEECCCCccccccccccccccc
Confidence 666543211 1345556677777777666665555432 34667777777777655432 1223
Q ss_pred cCCcCeEEecCCCCce----ecC-CCCCcccccccccCCCCCCCcCCC----cCCCcCeEEEeccc
Q 000983 821 LSSLRVLNIKGMLELE----KWP-NDEDCRFLGRLKISNCPRLNELPE----CMPNLTVMKIKKCC 877 (1199)
Q Consensus 821 l~~L~~L~L~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~ 877 (1199)
.+.++.++++++.... .++ .+..++.|+.|++++|... .+|. .+++|+.|++.+++
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 4556666666653221 111 2234566677777776543 4443 35667777777664
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=2.3e-17 Score=184.12 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=50.3
Q ss_pred HHHhccCCcccEEecCCCCCccc---CcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccc--hhhc
Q 000983 584 DKIFHQLKYLRLLDLSSSTLTVL---PDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELP--KDLA 658 (1199)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~~~l~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~ 658 (1199)
...|.++++|++|+|++|.+..+ |..+..+.+|++|+|++|.+..+|..+.++++|++|++++|.+ ..+| ..+.
T Consensus 45 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~ 123 (306)
T 2z66_A 45 HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFL 123 (306)
T ss_dssp TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTT
T ss_pred HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc-cccccchhhh
Confidence 33444555555555555554432 3344445555555555555555555555555555555555442 2222 2444
Q ss_pred cccccceeecccccccccccCCCCcCCccccCccCe
Q 000983 659 NLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHV 694 (1199)
Q Consensus 659 ~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l 694 (1199)
.+++|++|++++|.+. ...|..++.+++|++|++
T Consensus 124 ~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 124 SLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp TCTTCCEEECTTSCCE--ECSTTTTTTCTTCCEEEC
T ss_pred hccCCCEEECCCCcCC--ccchhhcccCcCCCEEEC
Confidence 5555555555554332 122333444444444444
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=187.77 Aligned_cols=252 Identities=17% Similarity=0.144 Sum_probs=148.5
Q ss_pred CCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccEEeccCCCccccchh-hcccCcc
Q 000983 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNS-ICNLYNL 639 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 639 (1199)
++|+.|.+. .+.+..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. ++++++|
T Consensus 52 ~~L~~L~l~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLS-----NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECC-----CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 356666655 3334444444566666666666666666644 34466666666666666666666554 6666666
Q ss_pred cEEecCCCCcccccch--hhccccccceeecccccccccccC-CCCcCCccccCccCeEEecccCcCChhhhcCCCCCCC
Q 000983 640 QTLKLIGCIWIMELPK--DLANLVKLRNLELEEMFWFKCSTL-PAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG 716 (1199)
Q Consensus 640 ~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~n~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 716 (1199)
++|++++|. +..+|. .+..+++|++|++++|.. +..+ |..++.+++|++|++.++ ...+..+..+..+++|+
T Consensus 127 ~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~- 201 (353)
T 2z80_A 127 TFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVS- 201 (353)
T ss_dssp SEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEE-
T ss_pred CEEECCCCC-CcccCchhhhccCCCCcEEECCCCcc--ccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCC-
Confidence 666666665 334554 456666666666666521 1222 345566666666666653 23333344455555444
Q ss_pred ceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCC-----CCC
Q 000983 717 KLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGN-----SLP 791 (1199)
Q Consensus 717 ~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p 791 (1199)
.+.+..... .......+..+++|+.|+++.|......+. .+........++.+++.++... .+|
T Consensus 202 ~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 202 HLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS----------ELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp EEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred eecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccc----------ccccccccchhhccccccccccCcchhhhH
Confidence 333332211 111112234467899999998866532221 0112234567888888865443 356
Q ss_pred cccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCce
Q 000983 792 QWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELE 836 (1199)
Q Consensus 792 ~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~ 836 (1199)
.++ ..+++|+.|++++|.+.... .++.+++|++|++++|+...
T Consensus 271 ~~l--~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 271 KLL--NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHH--HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHH--hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 666 56899999999999888665 36899999999999996543
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=2e-17 Score=182.49 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=100.2
Q ss_pred cccEEecCCCCCcccC-cccccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCccccc-chhhccccccceeec
Q 000983 592 YLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMEL-PKDLANLVKLRNLEL 668 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 668 (1199)
+|++|+|++|.++.+| ..|..+++|++|+|++|.+..+ |..|+++++|++|++++|..+..+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 4455555555554443 2344555555555555555444 344555555555555554422222 444455555555555
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEec
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 748 (1199)
++|.+.. ..|..++++++|++|++.++.. ..... ..+..+++|+.|+++.|
T Consensus 113 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l-~~~~~--------------------------~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 113 DRCGLQE--LGPGLFRGLAALQYLYLQDNAL-QALPD--------------------------DTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTSCCCC--CCTTTTTTCTTCCEEECCSSCC-CCCCT--------------------------TTTTTCTTCCEEECCSS
T ss_pred CCCcCCE--ECHhHhhCCcCCCEEECCCCcc-cccCH--------------------------hHhccCCCccEEECCCC
Confidence 5543321 1133344455555554443210 00000 11222333444444443
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCC-CcccccCccCceeEEEEeCccCcccc--CcCCcCCcC
Q 000983 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLR 825 (1199)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~ 825 (1199)
......+ ..+..+++|+.|+++++....+ |.++ ..+++|+.|++++|.+.... .+..+++|+
T Consensus 164 ~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 164 RISSVPE-------------RAFRGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp CCCEECT-------------TTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred cccccCH-------------HHhcCccccCEEECCCCcccccCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 3221110 1244566777777776655544 5555 45778888888888776655 477788888
Q ss_pred eEEecCCCCc
Q 000983 826 VLNIKGMLEL 835 (1199)
Q Consensus 826 ~L~L~~~~~~ 835 (1199)
.|++++|+..
T Consensus 229 ~L~l~~N~~~ 238 (285)
T 1ozn_A 229 YLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCEE
T ss_pred EEeccCCCcc
Confidence 8888887644
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=2.1e-16 Score=186.70 Aligned_cols=197 Identities=23% Similarity=0.252 Sum_probs=121.4
Q ss_pred CcccEEecCCCCCccc-CcccccCccccEEeccCCCccccc-hhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
++|++|+|++|.++.+ |..|.++++|++|+|++|.|..++ ..|.++++|++|+|++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5788889998888855 567888889999999988888775 57888889999999888744433445788888999998
Q ss_pred ccccccccccCC-CCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEe
Q 000983 669 EEMFWFKCSTLP-AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEW 747 (1199)
Q Consensus 669 ~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~ 747 (1199)
++|.+. .+| ..+.++++|+.|++.+++...... ...+..+.+|+.|+++.
T Consensus 155 ~~N~l~---~~~~~~~~~l~~L~~L~l~~~~~l~~i~--------------------------~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 155 RNNPIE---SIPSYAFNRVPSLMRLDLGELKKLEYIS--------------------------EGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CSCCCC---EECTTTTTTCTTCCEEECCCCTTCCEEC--------------------------TTTTTTCTTCCEEECTT
T ss_pred CCCCcc---eeCHhHHhcCCcccEEeCCCCCCccccC--------------------------hhhccCCCCCCEEECCC
Confidence 888654 333 356778888888776543221111 11233344555555555
Q ss_pred cCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCC-CcccccCccCceeEEEEeCccCcccc--CcCCcCCc
Q 000983 748 SNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSL 824 (1199)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L 824 (1199)
|..... ..+..+++|+.|++++|....+ |.++ ..+++|+.|+|++|.+.... .+..+++|
T Consensus 206 n~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 206 CNIKDM---------------PNLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp SCCSSC---------------CCCTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred Cccccc---------------ccccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 433211 1234445555555555444433 2233 34555555555555554443 44555555
Q ss_pred CeEEecCCC
Q 000983 825 RVLNIKGML 833 (1199)
Q Consensus 825 ~~L~L~~~~ 833 (1199)
+.|+|++|.
T Consensus 269 ~~L~L~~N~ 277 (452)
T 3zyi_A 269 VELNLAHNN 277 (452)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 555555553
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=184.50 Aligned_cols=104 Identities=25% Similarity=0.355 Sum_probs=77.6
Q ss_pred CcccEEecCCCCCcccC-cccccCccccEEeccCCCccccc-hhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
+++++|+|++|.+..++ ..|.++++|++|+|++|.|..++ ..|.++++|++|+|++|.+....+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67888888888888654 66888888888888888888775 57888888888888888744333346788888888888
Q ss_pred ccccccccccCC-CCcCCccccCccCeEEe
Q 000983 669 EEMFWFKCSTLP-AGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 669 ~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~ 697 (1199)
++|.+. .+| ..+.++++|++|++.++
T Consensus 144 ~~N~i~---~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 144 RNNPIE---SIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp CSCCCC---EECTTTTTTCTTCCEEECCCC
T ss_pred CCCccc---ccCHHHhhhCcccCEeCCCCC
Confidence 888654 333 35677788887777653
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=8.9e-17 Score=179.39 Aligned_cols=102 Identities=22% Similarity=0.243 Sum_probs=76.6
Q ss_pred CcccEEecCCCCCcccCcc-cccCccccEEeccCCCcccc---chhhcccCcccEEecCCCCcccccchhhcccccccee
Q 000983 591 KYLRLLDLSSSTLTVLPDS-VEELKLLRYLDLSRTEIKVL---PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 666 (1199)
++|++|+|++|.++.+|.. |.++++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 5788888888888877765 67888888888888887755 5677778888888888877 55677778888888888
Q ss_pred ecccccccccccCC--CCcCCccccCccCeEE
Q 000983 667 ELEEMFWFKCSTLP--AGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp--~~i~~l~~L~~L~l~~ 696 (1199)
++++|.+. .+| ..+..+++|++|++.+
T Consensus 107 ~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 107 DFQHSNLK---QMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp ECTTSEEE---SSTTTTTTTTCTTCCEEECTT
T ss_pred ECCCCccc---ccccchhhhhccCCCEEECCC
Confidence 88887654 333 3566777777776654
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=184.87 Aligned_cols=240 Identities=19% Similarity=0.198 Sum_probs=152.8
Q ss_pred eEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCccccEE
Q 000983 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYL 619 (1199)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L 619 (1199)
+.+......+..++.. -.++++.|.+. .+.+..+.+..|.++++|++|+|++|.+..++ ..|.++.+|++|
T Consensus 46 ~~v~c~~~~l~~iP~~---~~~~l~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 46 SKVICVRKNLREVPDG---ISTNTRLLNLH-----ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp CEEECCSCCCSSCCSC---CCTTCSEEECC-----SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CEEEeCCCCcCcCCCC---CCCCCcEEEcc-----CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 3444444455555532 23678888887 45566666677899999999999999998765 678999999999
Q ss_pred eccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCC-CcCCccccCccCeEEe
Q 000983 620 DLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 620 ~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~ 697 (1199)
+|++|.++.+|. .|.++++|++|++++|.+....+..+.++++|++|++++|.. +..+|. .+..+++|++|++.++
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTTS
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeecCCCC
Confidence 999999998876 699999999999999985544455788999999999998532 244444 5778888888877653
Q ss_pred cccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCC
Q 000983 698 GSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNL 777 (1199)
Q Consensus 698 ~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 777 (1199)
... .++ .+..+.+|+.|+++.|......+ ..+..+++|
T Consensus 196 ~l~---------~~~--------------------~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~L 233 (440)
T 3zyj_A 196 NLR---------EIP--------------------NLTPLIKLDELDLSGNHLSAIRP-------------GSFQGLMHL 233 (440)
T ss_dssp CCS---------SCC--------------------CCTTCSSCCEEECTTSCCCEECT-------------TTTTTCTTC
T ss_pred cCc---------ccc--------------------ccCCCcccCEEECCCCccCccCh-------------hhhccCccC
Confidence 210 110 12233455555555553331111 234445555
Q ss_pred cEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCC
Q 000983 778 EELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGML 833 (1199)
Q Consensus 778 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~ 833 (1199)
+.|+++++....++.... ..+++|+.|+|++|.+.... .+..+++|+.|+|++|+
T Consensus 234 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 555555444444332211 34555555555555544433 34455555555555553
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=4.2e-16 Score=184.16 Aligned_cols=240 Identities=17% Similarity=0.151 Sum_probs=182.0
Q ss_pred eEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCccccEE
Q 000983 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYL 619 (1199)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L 619 (1199)
+.+......+..++.. -.++++.|.+. .+.+..+.+..|.++++|++|+|++|.+..++ ..|.++.+|++|
T Consensus 57 ~~v~c~~~~l~~iP~~---~~~~l~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQG---IPSNTRYLNLM-----ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp CEEECCSSCCSSCCSC---CCTTCSEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cEEEECCCCcCccCCC---CCCCccEEECc-----CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 3444444445554421 23688999987 45666666778999999999999999999665 679999999999
Q ss_pred eccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCC-CcCCccccCccCeEEe
Q 000983 620 DLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 620 ~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~ 697 (1199)
+|++|.++.+|. .|.++++|++|+|++|.+....+..+.++++|++|++++|. .+..+|. .+..+++|++|+++++
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCCC
Confidence 999999999876 48999999999999998554444578999999999999863 2345554 4788999999988664
Q ss_pred cccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCC
Q 000983 698 GSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNL 777 (1199)
Q Consensus 698 ~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 777 (1199)
... .+ ..+..+.+|+.|+++.|...... ...+..+++|
T Consensus 207 ~l~---------~~--------------------~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~l~~L 244 (452)
T 3zyi_A 207 NIK---------DM--------------------PNLTPLVGLEELEMSGNHFPEIR-------------PGSFHGLSSL 244 (452)
T ss_dssp CCS---------SC--------------------CCCTTCTTCCEEECTTSCCSEEC-------------GGGGTTCTTC
T ss_pred ccc---------cc--------------------ccccccccccEEECcCCcCcccC-------------cccccCccCC
Confidence 211 11 11344567888888877554222 2457778899
Q ss_pred cEEEEeecCCCCCC-cccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCC
Q 000983 778 EELQIFNYFGNSLP-QWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLE 834 (1199)
Q Consensus 778 ~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~ 834 (1199)
+.|+++++....++ ..+ ..+++|+.|+|++|.+.... .+..+++|+.|+|++|+.
T Consensus 245 ~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99999987766654 344 56899999999999887765 578899999999999853
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=3.2e-17 Score=183.53 Aligned_cols=242 Identities=14% Similarity=0.060 Sum_probs=161.5
Q ss_pred ccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcc
Q 000983 556 SVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICN 635 (1199)
Q Consensus 556 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 635 (1199)
..+..+++|+.|.+. .+.+...++..|..+++|++|+|++|.+..+++ +..+++|++|+|++|.++.+|.
T Consensus 28 ~~~~~~~~L~~L~L~-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~---- 97 (317)
T 3o53_A 28 SLRQSAWNVKELDLS-----GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV---- 97 (317)
T ss_dssp HHHTTGGGCSEEECT-----TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----
T ss_pred HHhccCCCCCEEECc-----CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----
Confidence 345567789999997 456666777889999999999999999987665 9999999999999999988763
Q ss_pred cCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCC
Q 000983 636 LYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLT 715 (1199)
Q Consensus 636 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 715 (1199)
+++|++|++++|.+.. +|. ..+++|++|++++|.+..+ .|..++.+++|++|+++++.. ....+..
T Consensus 98 ~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~-------- 163 (317)
T 3o53_A 98 GPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEI-DTVNFAE-------- 163 (317)
T ss_dssp CTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSG--GGBCTGGGSSEEEEECTTSCC-CEEEGGG--------
T ss_pred CCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCCCc--cchhhhccCCCCEEECCCCCC-CcccHHH--------
Confidence 4899999999998544 432 2468899999999976532 234677888888888765421 1111111
Q ss_pred CceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccc
Q 000983 716 GKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMR 795 (1199)
Q Consensus 716 ~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 795 (1199)
....+++|+.|++++|..... .....+++|+.|++++|....+|..+
T Consensus 164 -----------------~~~~l~~L~~L~L~~N~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~l~~~~- 210 (317)
T 3o53_A 164 -----------------LAASSDTLEHLNLQYNFIYDV---------------KGQVVFAKLKTLDLSSNKLAFMGPEF- 210 (317)
T ss_dssp -----------------GGGGTTTCCEEECTTSCCCEE---------------ECCCCCTTCCEEECCSSCCCEECGGG-
T ss_pred -----------------HhhccCcCCEEECCCCcCccc---------------ccccccccCCEEECCCCcCCcchhhh-
Confidence 112345666666666644311 12223567777777777666666665
Q ss_pred cCccCceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCc-eecC-CCCCcccccccccCCC
Q 000983 796 DGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLEL-EKWP-NDEDCRFLGRLKISNC 855 (1199)
Q Consensus 796 ~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~-~~~~-~~~~~~~L~~L~l~~~ 855 (1199)
..+++|+.|+|++|.+.... .+..+++|+.|++++|+.. ..++ .+..++.++.+++.++
T Consensus 211 -~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 211 -QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp -GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 45677777777777666544 5666777777777777554 1111 1233444555544433
No 71
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=5.1e-15 Score=172.96 Aligned_cols=312 Identities=13% Similarity=0.050 Sum_probs=184.9
Q ss_pred CccccchhhHHHHHHHH-hCCCCCCCCCcEEEEE--EeCCCCcHHHHHHHHhcccccc---cccc-eeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHML-LSDEFDEEDDAFVIPI--IGMPGLGKTTLAQLLFNEERVR---EHFE-SRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~~ 243 (1199)
..++||+.+++++..++ .....+.......+.| +|++|+||||||+++++..... ..|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 4211000012445666 9999999999999999842211 0122 35677777777888
Q ss_pred HHHHHHHHhcccCCCC-CCcHHHHHHHHHHHhC--CCeEEEEEecCCCcCc------cChHHHHHhhhCC---C--CCcE
Q 000983 244 RILKGMIEFHSKMEQS-TSSISLLETRLLEFLT--GQRFLLVLDDVWNEDY------RKWEPLQQLLKQG---H--KGSR 309 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~l~--~k~~LlVlDdvw~~~~------~~~~~l~~~l~~~---~--~gs~ 309 (1199)
.++..++..++..... ..+...+...+.+.+. +++++||+||+|.... ..+..+...+... + .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999888654322 3344555666666664 7899999999975321 2233333333321 2 3455
Q ss_pred EEEecCCchhhhhhc---------CCCceeCCCCChhHHHHHHHHHh---cCCCCCCccccchhHHHHHHHHHHhcC---
Q 000983 310 VLVTSRTARVSQIMG---------IRSPYLLEYLPEDQCWSIFKKIA---FNQGNFSSRMQQQNLEAIGREIVGKCK--- 374 (1199)
Q Consensus 310 iivTtR~~~v~~~~~---------~~~~~~l~~L~~~~~~~lf~~~a---~~~~~~~~~~~~~~~~~~~~~i~~~c~--- 374 (1199)
||+||+...+...+. ....+.+.+++.++++++|...+ +..... ..+....|++.|+
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW--------EPRHLELISDVYGEDK 253 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC--------CHHHHHHHHHHHCGGG
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC--------ChHHHHHHHHHHHHhc
Confidence 888887655332111 12238999999999999997654 221111 1356778889999
Q ss_pred ---CChHHHHHHHHhh---c---cC--CCHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhccCC
Q 000983 375 ---GLPLAVKAIAGFL---R---KY--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFP 443 (1199)
Q Consensus 375 ---glPLai~~~~~~l---~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp 443 (1199)
|.|..+..+.... + .. -+.+.+..++.... . ...+.-++..||++.+.++..++.+.
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------~-~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-----------A-ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----------c-cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9997655544321 1 11 12344444443210 0 23345577889999999999888653
Q ss_pred --CCcccCHHHHHHHHHHc--cccccCCCCCCccHHHHHHHHHHHHHhccCcccccC--CCcceEEehHH
Q 000983 444 --KSYAFDKAEMVKFWMAE--ALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSNI--DDKVKYQMHDL 507 (1199)
Q Consensus 444 --~~~~i~~~~li~~W~ae--g~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~~~mhdl 507 (1199)
.+..+....+...|... .... ..... ......++++|++.++|..... ++.+.|++|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 322 LGGMEWINAGLLRQRYEDASLTMYN----VKPRG-YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRL 386 (412)
T ss_dssp HTTCSSBCHHHHHHHHHHHHHHHSC----CCCCC-HHHHHHHHHHHHHTTSEEEECC-------CCEEEE
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcC----CCCCC-HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEe
Confidence 33355566655554221 1111 00111 4556788999999999986532 23334545444
No 72
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.63 E-value=6.6e-16 Score=140.08 Aligned_cols=81 Identities=30% Similarity=0.359 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHhc--ccCChHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000983 13 IVEKAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEER--QLKVPQLKDWLGKLRNAAYDAEDILETFATQ 90 (1199)
Q Consensus 13 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~ 90 (1199)
+++.+++|+.+++.+|+..+.|+++++++|+++|++|++||.+|+++ +..++.++.|+++|||+|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999988 5678999999999999999999999999998
Q ss_pred HHH
Q 000983 91 VAM 93 (1199)
Q Consensus 91 ~~~ 93 (1199)
...
T Consensus 82 ~~~ 84 (115)
T 3qfl_A 82 VDG 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 764
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=7.2e-19 Score=216.85 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=77.7
Q ss_pred HHHHhccCCcccEEecCCCCC-cc---cCc------------ccccCccccEEeccCCCccc-cchhhc-ccCcccEEec
Q 000983 583 LDKIFHQLKYLRLLDLSSSTL-TV---LPD------------SVEELKLLRYLDLSRTEIKV-LPNSIC-NLYNLQTLKL 644 (1199)
Q Consensus 583 ~~~~~~~l~~Lr~L~L~~~~l-~~---lp~------------~i~~l~~Lr~L~L~~~~i~~-lp~~i~-~L~~L~~L~L 644 (1199)
+...+..+++|+.|+|+++.. .. .|. ....+++|++|+|++|.+.. .+..+. .+++|++|++
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence 446678899999999998752 21 121 13467899999999998773 345565 7899999999
Q ss_pred CCCCcccc--cchhhccccccceeecccccccccc--cCCCCcCCccccCccCeEE
Q 000983 645 IGCIWIME--LPKDLANLVKLRNLELEEMFWFKCS--TLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 645 ~~~~~l~~--lp~~i~~L~~L~~L~l~~n~~~~~~--~lp~~i~~l~~L~~L~l~~ 696 (1199)
++|..+.. ++..+.++++|++|++++|.+.... .++.....+++|++|++.+
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~ 193 (594)
T 2p1m_B 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193 (594)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTT
T ss_pred CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecc
Confidence 99854544 5555668999999999998654311 1222233555666665543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=5.3e-16 Score=184.00 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=41.2
Q ss_pred CcccEEecCCCCCcccC-cccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecc
Q 000983 591 KYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (1199)
++|++|+|++|.+..+| ..|+.+++|++|+|++|.+..++. ++++++|++|+|++|. +..+| ..++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECc
Confidence 35666666666665443 456666666666666666654443 5666666666666554 23232 12455555555
Q ss_pred cc
Q 000983 670 EM 671 (1199)
Q Consensus 670 ~n 671 (1199)
+|
T Consensus 108 ~N 109 (487)
T 3oja_A 108 NN 109 (487)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=2.1e-16 Score=176.42 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=52.5
Q ss_pred ccEEecCCCCCc--ccCcccc-------cCccccEEeccCCCcc-ccchhh--cccCcccEEecCCCCcccccchhhccc
Q 000983 593 LRLLDLSSSTLT--VLPDSVE-------ELKLLRYLDLSRTEIK-VLPNSI--CNLYNLQTLKLIGCIWIMELPKDLANL 660 (1199)
Q Consensus 593 Lr~L~L~~~~l~--~lp~~i~-------~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~L 660 (1199)
|++|+|++|.+. .+|..+. ++.+|++|+|++|.+. .+|..+ +++++|++|++++|.+.+. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 555555555553 3444443 4555666666665555 445544 5555666666655553332 5555554
Q ss_pred -----cccceeecccccccccccCCCCcCCccccCccCeEE
Q 000983 661 -----VKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 661 -----~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
++|++|++++|.+.. ..|..++.+++|++|++++
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLN--FSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCC--CCTTTCCCCSSCCEEECCS
T ss_pred HHhhcCCCcEEEeeCCCCcc--chHHHhccCCCCCEEECCC
Confidence 556666665554421 1224455555555555544
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=3.2e-15 Score=164.77 Aligned_cols=195 Identities=19% Similarity=0.173 Sum_probs=129.3
Q ss_pred ccEEecCCCCCcccCcccccCccccEEeccCCCccccc-hhhcccCcccEEecCCCCcccccchhhccccccceeecccc
Q 000983 593 LRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1199)
Q Consensus 593 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 671 (1199)
-++++.+++.++.+|..+ ..+|++|+|++|.++.+| ..|.++++|++|++++|.+....|..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 368899999999999765 479999999999999887 46999999999999999866666889999999999999998
Q ss_pred cccccccC-CCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCC
Q 000983 672 FWFKCSTL-PAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNN 750 (1199)
Q Consensus 672 ~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~ 750 (1199)
.. +..+ |..+..+++|++|++.++.. .... ...+..+++|+.|+++.|..
T Consensus 91 ~~--l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--------------------------~~~~~~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 91 AQ--LRSVDPATFHGLGRLHTLHLDRCGL-QELG--------------------------PGLFRGLAALQYLYLQDNAL 141 (285)
T ss_dssp TT--CCCCCTTTTTTCTTCCEEECTTSCC-CCCC--------------------------TTTTTTCTTCCEEECCSSCC
T ss_pred CC--ccccCHHHhcCCcCCCEEECCCCcC-CEEC--------------------------HhHhhCCcCCCEEECCCCcc
Confidence 51 2344 56788888888888765321 1110 11233344555666655543
Q ss_pred CCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcc-cccCccCceeEEEEeCccCcccc--CcCCcCCcCeE
Q 000983 751 RDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQW-MRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVL 827 (1199)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L 827 (1199)
....+ ..+..+++|+.|+++++....+|.. + ..+++|+.|++++|.+.... .++.+++|+.|
T Consensus 142 ~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 142 QALPD-------------DTFRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp CCCCT-------------TTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccCH-------------hHhccCCCccEEECCCCcccccCHHHh--cCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 32111 1244455666666665555544442 3 34556666666666554443 45555666666
Q ss_pred EecCCC
Q 000983 828 NIKGML 833 (1199)
Q Consensus 828 ~L~~~~ 833 (1199)
++++|.
T Consensus 207 ~l~~n~ 212 (285)
T 1ozn_A 207 YLFANN 212 (285)
T ss_dssp ECCSSC
T ss_pred eCCCCc
Confidence 665553
No 77
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=3.3e-14 Score=162.13 Aligned_cols=294 Identities=12% Similarity=0.117 Sum_probs=178.1
Q ss_pred cCCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC------Ch
Q 000983 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY------DL 242 (1199)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~~ 242 (1199)
....|+||+.+++++.+++... +++.|+|++|+|||||++++++.. + .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 3467999999999999998642 489999999999999999999742 1 6777765432 45
Q ss_pred HHHHHHHHHhccc---------------C-CC--CCCcHHHHHHHHHHHhCC-CeEEEEEecCCCcCc-------cChHH
Q 000983 243 PRILKGMIEFHSK---------------M-EQ--STSSISLLETRLLEFLTG-QRFLLVLDDVWNEDY-------RKWEP 296 (1199)
Q Consensus 243 ~~~~~~i~~~~~~---------------~-~~--~~~~~~~l~~~l~~~l~~-k~~LlVlDdvw~~~~-------~~~~~ 296 (1199)
..+...+.+.+.. . .. .......+.+.+.+..+. ++.+||+||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666554432 0 00 013445555666555543 389999999965331 11222
Q ss_pred HHHhhhCCCCCcEEEEecCCchhhhhh-----------cC-CCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHH
Q 000983 297 LQQLLKQGHKGSRVLVTSRTARVSQIM-----------GI-RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEA 364 (1199)
Q Consensus 297 l~~~l~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~ 364 (1199)
+..... ...+.++|+|++...+...+ +. ...+++.+|+.+|+.+++.......+.. .-.+
T Consensus 155 L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-------~~~~ 226 (350)
T 2qen_A 155 FAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-------VPEN 226 (350)
T ss_dssp HHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-------CCHH
T ss_pred HHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-------CCHH
Confidence 333222 23578899998875432111 11 2368899999999999998754322210 1135
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHH-HHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhccCC
Q 000983 365 IGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRK-ILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFP 443 (1199)
Q Consensus 365 ~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp 443 (1199)
.+.+|++.++|+|+++..++..+....+...+.. +.+.....+. ..+ -.+.+ + ++..+..+..+|.
T Consensus 227 ~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l---~~l~~-~-~~~~~~~l~~la~-- 293 (350)
T 2qen_A 227 EIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM------GEL---EELRR-R-SPRYVDILRAIAL-- 293 (350)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------HHH---HHHHH-H-CHHHHHHHHHHHT--
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH------HHH---HHHHh-C-ChhHHHHHHHHHh--
Confidence 6789999999999999999876532222222221 1111000000 011 11112 2 7888999999987
Q ss_pred CCcccCHHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHhccCcccccCCCcceEEe-hHHHHHHHH
Q 000983 444 KSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQM-HDLFHDLAQ 513 (1199)
Q Consensus 444 ~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~m-hdlv~~~a~ 513 (1199)
. ......+.....+. . + ..+ ......+++.|.+.++|.... ..|.+ |++++++.+
T Consensus 294 g--~~~~~~l~~~~~~~-~-----~--~~~-~~~~~~~l~~L~~~gli~~~~----~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 G--YNRWSLIRDYLAVK-G-----T--KIP-EPRLYALLENLKKMNWIVEED----NTYKIADPVVATVLR 349 (350)
T ss_dssp T--CCSHHHHHHHHHHT-T-----C--CCC-HHHHHHHHHHHHHTTSEEEET----TEEEESSHHHHHHHT
T ss_pred C--CCCHHHHHHHHHHH-h-----C--CCC-HHHHHHHHHHHHhCCCEEecC----CEEEEecHHHHHHHc
Confidence 2 23445554443221 0 0 011 455678999999999998652 34554 778877643
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=1.6e-15 Score=166.23 Aligned_cols=54 Identities=15% Similarity=-0.018 Sum_probs=37.2
Q ss_pred EEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCC
Q 000983 779 ELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLE 834 (1199)
Q Consensus 779 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~ 834 (1199)
.|+++++....+|.... ...+|+.|++++|.+.... .++.+++|+.|++++|+.
T Consensus 181 ~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred eeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 56666666666665542 2447888888888776655 467788888888888754
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=2.2e-16 Score=176.22 Aligned_cols=241 Identities=20% Similarity=0.170 Sum_probs=153.7
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCcc--ccchhhc-------ccCcccEEecCCCCcccccchhh
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIK--VLPNSIC-------NLYNLQTLKLIGCIWIMELPKDL 657 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~l~~lp~~i 657 (1199)
++..++|+.|++++|.+ .+|..+... |++|+|++|.+. .+|..+. ++++|++|++++|.+.+.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45678899999999999 889877765 999999999986 4677766 89999999999999777899887
Q ss_pred --ccccccceeecccccccccccCCCCcCCc-----cccCccCeEEecccCcCChhhhcCCCCCCCceeeCCcccccccc
Q 000983 658 --ANLVKLRNLELEEMFWFKCSTLPAGIGKL-----TNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGG 730 (1199)
Q Consensus 658 --~~L~~L~~L~l~~n~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~ 730 (1199)
..+++|++|++++|.+. .+|..++.+ ++|++|++.++. ..+.....+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~---~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~-------------------- 171 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWA---TRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV-------------------- 171 (312)
T ss_dssp SSCCSCCCSEEEEESCBCS---SSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC--------------------
T ss_pred HHhcCCCccEEEccCCCCc---chhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc--------------------
Confidence 89999999999999764 347777777 899999998753 23333333333
Q ss_pred ccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhcc--CCCCCCcEEEEeecCCCCCCc---ccccCccCceeEE
Q 000983 731 EAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDL--QPHPNLEELQIFNYFGNSLPQ---WMRDGRLQNLVSL 805 (1199)
Q Consensus 731 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~L~~L 805 (1199)
+++|+.|+++.|... .....+..+ ..+++|+.|+++++....++. .+. ..+++|+.|
T Consensus 172 ------l~~L~~L~Ls~N~l~-----------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~l~~L~~L 233 (312)
T 1wwl_A 172 ------FPALSTLDLSDNPEL-----------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-AARVQLQGL 233 (312)
T ss_dssp ------CSSCCEEECCSCTTC-----------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH-HTTCCCSEE
T ss_pred ------CCCCCEEECCCCCcC-----------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH-hcCCCCCEE
Confidence 445555555554322 111122222 455666666666555543322 111 234666666
Q ss_pred EEeCccCcccc---CcCCcCCcCeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCC--cCCCcCeEEEec
Q 000983 806 TLKGCTNCRIL---SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE--CMPNLTVMKIKK 875 (1199)
Q Consensus 806 ~L~~~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~ 875 (1199)
++++|.+.... .+..+++|++|++++|... .++..-. +.|+.|++++|.... +|. .+++|+.|++.+
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKG 305 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCS-CCCTTTSCEEEEEECTT
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCC-ChhHhhCCCCCEEeccC
Confidence 66666655533 3344566666666666543 3332111 566666666665432 233 334444555444
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=3.1e-15 Score=166.28 Aligned_cols=191 Identities=20% Similarity=0.221 Sum_probs=128.4
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
.+++|++|++++|.+..+| .+..+++|++|+|++|.+..+|. +.++++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4667778888888777776 47778888888888888877776 7788888888888776 44454 5777888888888
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEec
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 748 (1199)
++|.+.. +| .++.+++|++|++.++.. .+. ..+..+++|+.|+++.|
T Consensus 115 ~~n~l~~---~~-~l~~l~~L~~L~l~~n~l-~~~----------------------------~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 115 TSTQITD---VT-PLAGLSNLQVLYLDLNQI-TNI----------------------------SPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp TTSCCCC---CG-GGTTCTTCCEEECCSSCC-CCC----------------------------GGGGGCTTCCEEECCSS
T ss_pred CCCCCCC---ch-hhcCCCCCCEEECCCCcc-CcC----------------------------ccccCCCCccEEEccCC
Confidence 8775543 33 366777777777655321 000 01334455666666655
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCCcCeEE
Q 000983 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLN 828 (1199)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~ 828 (1199)
..... ..+..+++|+.|+++++....++. + ..+++|+.|++++|.+....++..+++|+.|+
T Consensus 162 ~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 162 QVSDL---------------TPLANLSKLTTLKADDNKISDISP-L--ASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223 (308)
T ss_dssp CCCCC---------------GGGTTCTTCCEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEE
T ss_pred cCCCC---------------hhhcCCCCCCEEECCCCccCcChh-h--cCCCCCCEEEccCCccCccccccCCCCCCEEE
Confidence 43310 115566778888887776666665 3 45788888888888776666777788888888
Q ss_pred ecCCCC
Q 000983 829 IKGMLE 834 (1199)
Q Consensus 829 L~~~~~ 834 (1199)
+++|..
T Consensus 224 l~~N~i 229 (308)
T 1h6u_A 224 LTNQTI 229 (308)
T ss_dssp EEEEEE
T ss_pred ccCCee
Confidence 887753
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=6.4e-15 Score=160.77 Aligned_cols=207 Identities=20% Similarity=0.174 Sum_probs=135.7
Q ss_pred ccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceee
Q 000983 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1199)
Q Consensus 588 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 667 (1199)
..+++|+.|++++|.+..++ .+..+++|++|+|++|.+..++ .++++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 45677888888888877765 3777888888888888877764 677888888888888875444444567788888888
Q ss_pred cccccccccccCCC-CcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEE
Q 000983 668 LEEMFWFKCSTLPA-GIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1199)
Q Consensus 668 l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~ 746 (1199)
+++|.+. .+|. .++.+++|++|++.++.. .+.
T Consensus 116 L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l-~~~------------------------------------------- 148 (272)
T 3rfs_A 116 LVENQLQ---SLPDGVFDKLTNLTYLNLAHNQL-QSL------------------------------------------- 148 (272)
T ss_dssp CTTSCCC---CCCTTTTTTCTTCCEEECCSSCC-CCC-------------------------------------------
T ss_pred CCCCcCC---ccCHHHhccCCCCCEEECCCCcc-Ccc-------------------------------------------
Confidence 8887553 3333 356677777766654310 000
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCc
Q 000983 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSL 824 (1199)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L 824 (1199)
.+ ..+..+++|+.|+++++....+|.... ..+++|+.|++++|.+.... .++.+++|
T Consensus 149 -------~~-------------~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 149 -------PK-------------GVFDKLTNLTELDLSYNQLQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp -------CT-------------TTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -------CH-------------HHhccCccCCEEECCCCCcCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 00 123344566666666655555554322 45778888888888776655 46778888
Q ss_pred CeEEecCCCCceecCCCCCcccccccccCCCCCCCcCCCcCCCcCe
Q 000983 825 RVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTV 870 (1199)
Q Consensus 825 ~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~ 870 (1199)
++|++++|+... .++.++.++++.|...+.+|..+.++..
T Consensus 208 ~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 208 QYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 888888885432 2456777777777766777766655543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=1.6e-14 Score=158.77 Aligned_cols=103 Identities=22% Similarity=0.195 Sum_probs=74.1
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchhhccccccce
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 665 (1199)
+.++++|+.++++++.++.+|..+. .+|++|+|++|.+..+ |..|.++++|++|++++|. +..+|.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 3567778888888888887777664 6788888888888766 4567888888888888877 4445543 67778888
Q ss_pred eecccccccccccCCCCcCCccccCccCeEE
Q 000983 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
|++++|.+ ..+|..+..+++|++|++.+
T Consensus 82 L~Ls~N~l---~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 82 LDLSHNQL---QSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp EECCSSCC---SSCCCCTTTCTTCCEEECCS
T ss_pred EECCCCcC---CcCchhhccCCCCCEEECCC
Confidence 88888754 45666667777777776654
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=4e-15 Score=176.44 Aligned_cols=218 Identities=16% Similarity=0.085 Sum_probs=148.7
Q ss_pred CCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcc
Q 000983 560 NSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNL 639 (1199)
Q Consensus 560 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 639 (1199)
.+++|+.|.+. .+.+..+++..|..+++|++|+|++|.+..+++ ++.+++|++|+|++|.|+.+|.. ++|
T Consensus 32 ~~~~L~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L 101 (487)
T 3oja_A 32 SAWNVKELDLS-----GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSI 101 (487)
T ss_dssp TGGGCCEEECC-----SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTC
T ss_pred cCCCccEEEee-----CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCc
Confidence 44589999997 455666667789999999999999999987665 99999999999999999988743 899
Q ss_pred cEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCcee
Q 000983 640 QTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLH 719 (1199)
Q Consensus 640 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~ 719 (1199)
++|++++|.+.+..+ ..+++|++|++++|.+.. ..|..++.+++|++|+++++. .++..+..+
T Consensus 102 ~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l----------- 164 (487)
T 3oja_A 102 ETLHAANNNISRVSC---SRGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL----------- 164 (487)
T ss_dssp CEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCS--GGGBCGGGGSSEEEEECTTSC-CCEEEGGGG-----------
T ss_pred CEEECcCCcCCCCCc---cccCCCCEEECCCCCCCC--CCchhhcCCCCCCEEECCCCC-CCCcChHHH-----------
Confidence 999999998554433 346899999999997653 245677888899988886542 111111111
Q ss_pred eCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCcc
Q 000983 720 ISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRL 799 (1199)
Q Consensus 720 l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l 799 (1199)
...+++|+.|++++|..... ..+..+++|+.|++++|....+|..+ ..+
T Consensus 165 --------------~~~l~~L~~L~Ls~N~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~l 213 (487)
T 3oja_A 165 --------------AASSDTLEHLNLQYNFIYDV---------------KGQVVFAKLKTLDLSSNKLAFMGPEF--QSA 213 (487)
T ss_dssp --------------GGGTTTCCEEECTTSCCCEE---------------ECCCCCTTCCEEECCSSCCCEECGGG--GGG
T ss_pred --------------hhhCCcccEEecCCCccccc---------------cccccCCCCCEEECCCCCCCCCCHhH--cCC
Confidence 11334566666665544311 11223556666666666666666554 446
Q ss_pred CceeEEEEeCccCcccc-CcCCcCCcCeEEecCCCCc
Q 000983 800 QNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLEL 835 (1199)
Q Consensus 800 ~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~ 835 (1199)
++|+.|+|++|.+.... .++.+++|+.|++++|+..
T Consensus 214 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 66666666666665544 4556666666666666543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=6.3e-14 Score=149.78 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=136.1
Q ss_pred CCCcEEEccccccCCCCCc--ccccccceeeecC-CCCCccc-cCCCCCCCCCEEeecCCCCCCCCCCCCCCCccc---e
Q 000983 948 APQKLEISGCDLLSTLPNS--EFSQRLQLLALEG-CPDGTLV-RAIPETSSLNFLILSKISNLDSFPRWPNLPGLK---A 1020 (1199)
Q Consensus 948 ~l~~L~l~~~~~~~~~p~~--~~~~~L~~L~l~~-~~~~~~~-~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~---~ 1020 (1199)
.++.|++++|..++.++.. ..+++|++|++++ |.....+ ..+.++++|++|++++|.+.. +|.+..+++|+ +
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~ 134 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFI 134 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEE
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccE
Confidence 4466777777644445442 4568899999998 6654444 467788999999999998655 77788888888 9
Q ss_pred EEEccCCCCCCCcccccCCCCCCcc-eEEecCCCCCCcCCCCCcc-CCcceEEeccCCCCcccCCCCCCCCC-CCCCcee
Q 000983 1021 LYIRDCKDLVSLSGEGALQSLTSLN-LLSIRGCPKLETLPDEGLP-TSLKCLIIASCSGLKSLGPRGTLKSL-NSLKDFY 1097 (1199)
Q Consensus 1021 L~l~~c~~L~~l~~~~~l~~l~~L~-~L~l~~c~~l~~l~~~~~~-~sL~~L~l~~c~~L~~lp~~~~l~~l-~sL~~L~ 1097 (1199)
|++++|+.++.++. ..+.++++|+ +|++++|. ++.+|...+. ++|+.|++++|+.++.++. ..+..+ ++|++|+
T Consensus 135 L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 135 LEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEESCTTCCEECT-TTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEE
T ss_pred EECCCCcchhhcCc-ccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEE
Confidence 99999966888875 4688999999 99999976 6677765443 7899999999977888876 368888 9999999
Q ss_pred ecCCCCCCCCCCCCCCCCcCeEEccCCcch
Q 000983 1098 IEDCPLLQSFPEDGLPENLQHLVIQNCPLL 1127 (1199)
Q Consensus 1098 i~~c~~l~~lp~~~l~~sL~~L~i~~c~~L 1127 (1199)
+++| .++.+|.. ..++|+.|++.+++.|
T Consensus 212 l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 212 VSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCCC-ccccCChh-HhccCceeeccCccCC
Confidence 9998 78899876 4579999999998764
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=4e-14 Score=154.33 Aligned_cols=99 Identities=27% Similarity=0.353 Sum_probs=56.1
Q ss_pred cccEEecCCCCCcccCcccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchh-hccccccceeecc
Q 000983 592 YLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLELE 669 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 669 (1199)
.++.++++++.++.+|..+. .+|++|+|++|.+..+|. .|.++++|++|++++|. +..+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence 35566666666666665443 456666666666666544 56666666666666665 3344433 3556666666666
Q ss_pred cccccccccCCC-CcCCccccCccCeEE
Q 000983 670 EMFWFKCSTLPA-GIGKLTNLHNLHVFR 696 (1199)
Q Consensus 670 ~n~~~~~~~lp~-~i~~l~~L~~L~l~~ 696 (1199)
+|.+. .+|. .+..+++|++|++.+
T Consensus 94 ~n~l~---~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 94 DNKLQ---ALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp SSCCC---CCCTTTTTTCSSCCEEECCS
T ss_pred CCcCC---cCCHhHcccccCCCEEECCC
Confidence 66432 2332 335555555555543
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=7.9e-15 Score=163.59 Aligned_cols=208 Identities=16% Similarity=0.044 Sum_probs=144.1
Q ss_pred cCCcccEEecCCCCCc-ccCccc--ccCccccEEeccCCCcccc-c----hhhcccCcccEEecCCCCcccccchhhccc
Q 000983 589 QLKYLRLLDLSSSTLT-VLPDSV--EELKLLRYLDLSRTEIKVL-P----NSICNLYNLQTLKLIGCIWIMELPKDLANL 660 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~-~lp~~i--~~l~~Lr~L~L~~~~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 660 (1199)
.+++|++|+|++|.+. ..|..+ +.+.+|++|+|++|.+... | ..+..+++|++|++++|.+....|..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4567999999999988 667777 8999999999999998852 2 356689999999999999766677889999
Q ss_pred cccceeecccccccccccCC--CCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCcccccccccccccccc
Q 000983 661 VKLRNLELEEMFWFKCSTLP--AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKE 738 (1199)
Q Consensus 661 ~~L~~L~l~~n~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~ 738 (1199)
++|++|++++|.+.....++ ..++.+++|++|+++++.. +. +. ......+..+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~--l~---------------------~~~~~l~~~l~ 224 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ET--PT---------------------GVCAALAAAGV 224 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CC--HH---------------------HHHHHHHHHTC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-Cc--hH---------------------HHHHHHHhcCC
Confidence 99999999999764322232 3347889999999876421 10 00 00001123456
Q ss_pred ccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCc
Q 000983 739 SLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSL 818 (1199)
Q Consensus 739 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l 818 (1199)
+|+.|++++|......|.. +..+..+++|+.|++++|....+|..+ +++|+.|+|++|.+.....+
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~----------~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~~~~ 290 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPS----------APRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRAPQP 290 (310)
T ss_dssp CCSSEECTTSCCCCCCCSC----------CSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSCCCT
T ss_pred CCCEEECCCCCCCccchhh----------HHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCCchh
Confidence 7777777777655432210 012223367888888877777777655 36777888887777664445
Q ss_pred CCcCCcCeEEecCCCC
Q 000983 819 GQLSSLRVLNIKGMLE 834 (1199)
Q Consensus 819 ~~l~~L~~L~L~~~~~ 834 (1199)
..+++|+.|++++|+.
T Consensus 291 ~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 291 DELPEVDNLTLDGNPF 306 (310)
T ss_dssp TSCCCCSCEECSSTTT
T ss_pred hhCCCccEEECcCCCC
Confidence 6677777777777753
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=2.3e-14 Score=157.00 Aligned_cols=104 Identities=30% Similarity=0.248 Sum_probs=72.9
Q ss_pred CcccEEecCCCCCcccCc-ccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
+.|++|+|++|.++.++. .|.++++|++|+|++|.+..+|. .+.++++|++|++++|.+....|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357788888888876654 67788888888888888877654 6788888888888887755555567778888888888
Q ss_pred ccccccccccCCCCcCCccccCccCeEE
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
++|.+..+ .+..++.+++|++|++.+
T Consensus 108 ~~n~l~~~--~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 108 VETNLASL--ENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp TTSCCCCS--TTCCCTTCTTCCEEECCS
T ss_pred CCCCcccc--CchhcccCCCCCEEECcC
Confidence 87755322 112355666666665543
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=3.8e-13 Score=153.77 Aligned_cols=289 Identities=12% Similarity=0.107 Sum_probs=173.0
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC-----CChHH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-----YDLPR 244 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~ 244 (1199)
...|+||+.+++.+.+ +.. +++.|+|++|+|||||++++++. ... ..+|+.+... .+...
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHH
Confidence 4579999999999998 632 48999999999999999999974 222 2578877643 34444
Q ss_pred HHHHHHHhccc--------------------CC---C------CCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc---c
Q 000983 245 ILKGMIEFHSK--------------------ME---Q------STSSISLLETRLLEFLTGQRFLLVLDDVWNEDY---R 292 (1199)
Q Consensus 245 ~~~~i~~~~~~--------------------~~---~------~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~---~ 292 (1199)
....+.+.+.. .. . .......+.+.+.+.-+ ++++||+||++..+. .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 44444433210 00 0 11234455555544322 499999999965321 2
Q ss_pred ChHHHHHhhhCCCCCcEEEEecCCchhhhh----------h-cC-CCceeCCCCChhHHHHHHHHHhcCCCCCCccccch
Q 000983 293 KWEPLQQLLKQGHKGSRVLVTSRTARVSQI----------M-GI-RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQ 360 (1199)
Q Consensus 293 ~~~~l~~~l~~~~~gs~iivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~ 360 (1199)
+|..+...+.....+.++|+|+|....... + +. ...+++.+|+.+|+.+++...+...+. ..+
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-----~~~ 230 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-----DFK 230 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-----CCC
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-----CCC
Confidence 333333333222347889999997653221 1 11 246889999999999999875421111 111
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHhhccCCCHHHHHHH-HhhhccccccCCCCCCCcccch-hhcc--cCCChhhHHHH
Q 000983 361 NLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKI-LSSDIWELEEGSSNGPHILPPL-KLSY--DHLPPFLKHCF 436 (1199)
Q Consensus 361 ~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~~~~i~~~l-~~sy--~~L~~~~k~cf 436 (1199)
. . .+|++.|+|+|+++..++..+....+...|..- .+.... .+...+ .+.+ ..||+..+..+
T Consensus 231 ~---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~~~~~l 296 (357)
T 2fna_A 231 D---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARKRYLNIM 296 (357)
T ss_dssp C---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred c---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccHHHHHHH
Confidence 1 1 789999999999999999876533333344321 111000 000111 1111 16889999999
Q ss_pred HHhccCCCCcccCHHHHHHHHH-HccccccCCCCCCccHHHHHHHHHHHHHhccCcccccCCCcceEE-ehHHHHHH
Q 000983 437 SLCSIFPKSYAFDKAEMVKFWM-AEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQ-MHDLFHDL 511 (1199)
Q Consensus 437 l~~s~fp~~~~i~~~~li~~W~-aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~-mhdlv~~~ 511 (1199)
..+|. +. +...+....- ..|. ..+ ......+++.|++.++|.... ..|. .|++++++
T Consensus 297 ~~la~---g~--~~~~l~~~~~~~~g~--------~~~-~~~~~~~L~~L~~~gli~~~~----~~y~f~~~~~~~~ 355 (357)
T 2fna_A 297 RTLSK---CG--KWSDVKRALELEEGI--------EIS-DSEIYNYLTQLTKHSWIIKEG----EKYCPSEPLISLA 355 (357)
T ss_dssp HHHTT---CB--CHHHHHHHHHHHHCS--------CCC-HHHHHHHHHHHHHTTSEEESS----SCEEESSHHHHHH
T ss_pred HHHHc---CC--CHHHHHHHHHHhcCC--------CCC-HHHHHHHHHHHHhCCCEEecC----CEEEecCHHHHHh
Confidence 99998 22 4444433211 1121 011 455678999999999997653 3466 47888775
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=2.1e-14 Score=153.40 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=106.8
Q ss_pred cccEEecCCCCCcccCc-ccccCccccEEeccCCC-ccccch-hhcccCcccEEecCC-CCcccccc-hhhcccccccee
Q 000983 592 YLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTE-IKVLPN-SICNLYNLQTLKLIG-CIWIMELP-KDLANLVKLRNL 666 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~~l~~lp-~~i~~L~~L~~L 666 (1199)
.|++|+|++|.++.+|. .|.++++|++|++++|. ++.+|. .|.++++|++|++++ |. +..+| ..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence 67788888888887665 57778888888888886 777765 677888888888887 55 44444 456778888888
Q ss_pred ecccccccccccCCCCcCCccccC---ccCeEEecccCcCChhhhcCCCCCCCceeeCCcccccccccccccccccccee
Q 000983 667 ELEEMFWFKCSTLPAGIGKLTNLH---NLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKL 743 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L 743 (1199)
++++|.+. .+|. ++.+++|+ +|++.++.
T Consensus 111 ~l~~n~l~---~lp~-~~~l~~L~~L~~L~l~~N~--------------------------------------------- 141 (239)
T 2xwt_C 111 GIFNTGLK---MFPD-LTKVYSTDIFFILEITDNP--------------------------------------------- 141 (239)
T ss_dssp EEEEECCC---SCCC-CTTCCBCCSEEEEEEESCT---------------------------------------------
T ss_pred eCCCCCCc---cccc-cccccccccccEEECCCCc---------------------------------------------
Confidence 88877543 3454 55555555 44443320
Q ss_pred EEEecCCCCCCCCCCCCccchHHHhhccCCCCCCc-EEEEeecCCCCCCcccccCccCceeEEEEeCcc-Ccccc--CcC
Q 000983 744 VFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLE-ELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCT-NCRIL--SLG 819 (1199)
Q Consensus 744 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~-~~~~~--~l~ 819 (1199)
...... ...+..+++|+ .|+++++....+|..... .++|+.|++++|. +.... .+.
T Consensus 142 -----~l~~i~-------------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 142 -----YMTSIP-------------VNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp -----TCCEEC-------------TTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCTTCCEECTTTTT
T ss_pred -----chhhcC-------------cccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCCCcccCCHHHhh
Confidence 111000 01233455666 666666555566655432 2577777777774 44433 456
Q ss_pred Cc-CCcCeEEecCCC
Q 000983 820 QL-SSLRVLNIKGML 833 (1199)
Q Consensus 820 ~l-~~L~~L~L~~~~ 833 (1199)
.+ ++|+.|++++|.
T Consensus 202 ~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTS 216 (239)
T ss_dssp TCSBCCSEEECTTCC
T ss_pred ccccCCcEEECCCCc
Confidence 66 777777776664
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=2.1e-13 Score=149.77 Aligned_cols=194 Identities=26% Similarity=0.266 Sum_probs=153.0
Q ss_pred cccccccEEEecCCCCCCCCCCC--CCCCcEEEccccccCCCCCc-ccccccceeeecCCCCCccccCCCCCCCCCEEee
Q 000983 924 HSFQTLLEMKAINCPKLRGLPQI--FAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGTLVRAIPETSSLNFLIL 1000 (1199)
Q Consensus 924 ~~~~~L~~L~l~~c~~L~~l~~~--~~l~~L~l~~~~~~~~~p~~-~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L 1000 (1199)
..+++++++.+.+ ..++.+|.. ..++.|++++|......+.. ..+++|++|++++|.....+.. ..+++|++|++
T Consensus 7 ~~l~~l~~l~~~~-~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTT-SCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cccCCccEEECCC-CCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 3467788887776 356677643 46789999999865443332 4568999999999986555443 78899999999
Q ss_pred cCCCCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCcc--CCcceEEeccCCC
Q 000983 1001 SKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSG 1077 (1199)
Q Consensus 1001 ~~n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~l~~c~~ 1077 (1199)
++|.+. .+|. +..+++|++|++++|. ++.++. ..|.++++|++|++++|. ++.++...+. ++|+.|++++|.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~- 159 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPL-GALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN- 159 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSC-CCCCCS-STTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCc-CcccCH-HHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-
Confidence 999866 4554 6889999999999997 677764 578999999999999975 7777765543 899999999986
Q ss_pred CcccCCCCCCCCCCCCCceeecCCCCCCCCCCCC-CCCCcCeEEccCCcc
Q 000983 1078 LKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDG-LPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1078 L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~-l~~sL~~L~i~~c~~ 1126 (1199)
++.+|. ..+..+++|++|++++| .++.+|... -..+|+.|++++||.
T Consensus 160 l~~l~~-~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPA-GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCH-HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 778876 35788999999999999 788998762 236899999998875
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=2.6e-15 Score=170.12 Aligned_cols=256 Identities=17% Similarity=0.124 Sum_probs=165.7
Q ss_pred CCccEEecccCCCcccchhhhHHHHhccC--CcccEEecCCCCCcccCcccccCccccEEeccCCCccc--cchhhcccC
Q 000983 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQL--KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKV--LPNSICNLY 637 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~ 637 (1199)
..++.+.+. .+.+. +..+..+ +.+++|++++|.+...+..+..+++|++|+|++|.+.. +|..+.+++
T Consensus 47 ~~~~~l~l~-----~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 47 SLWQTLDLT-----GKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TTSSEEECT-----TCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hhheeeccc-----cccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 346777776 22222 3445566 88999999999988777778889999999999998873 788899999
Q ss_pred cccEEecCCCCcccccchhhccccccceeecccc-cccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCC
Q 000983 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM-FWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG 716 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n-~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 716 (1199)
+|++|++++|.+....|..+..+++|++|++++| .+.. ..+|..+..+++|++|++.++...++..
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~------------ 185 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKH------------ 185 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHH------------
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCcChHH------------
Confidence 9999999999876778888999999999999998 3331 2345556778888888877652222110
Q ss_pred ceeeCCcccccccccccccccc-ccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecC-C-CCCCcc
Q 000983 717 KLHISKLENAVNGGEAKLSEKE-SLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYF-G-NSLPQW 793 (1199)
Q Consensus 717 ~L~l~~l~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~-~~~p~~ 793 (1199)
....+..++ +|+.|++++|... -....+...+..+++|+.|+++++. . ...+..
T Consensus 186 -------------~~~~~~~l~~~L~~L~l~~~~~~----------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 186 -------------VQVAVAHVSETITQLNLSGYRKN----------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp -------------HHHHHHHSCTTCCEEECCSCGGG----------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred -------------HHHHHHhcccCCCEEEeCCCccc----------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 111233344 6666776655210 0112333444556788888887665 2 344545
Q ss_pred cccCccCceeEEEEeCccCcccc---CcCCcCCcCeEEecCCCCceecCCCCCc-ccccccccCCCCCCCcCCCcCC
Q 000983 794 MRDGRLQNLVSLTLKGCTNCRIL---SLGQLSSLRVLNIKGMLELEKWPNDEDC-RFLGRLKISNCPRLNELPECMP 866 (1199)
Q Consensus 794 ~~~~~l~~L~~L~L~~~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~ 866 (1199)
+ ..+++|+.|++++|...... .++.+++|+.|++++| +.. ..+..+ ..+..|++++|...+..|..+.
T Consensus 243 l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~-~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 243 F--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD-GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp G--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT-TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred H--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCH-HHHHHHHhhCcceEEecccCccccCCccc
Confidence 5 45788888888888533222 4677888888888887 110 011112 2355666666665555554443
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=1.5e-13 Score=155.94 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=74.7
Q ss_pred cEEecCCCCCcccCcccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccch-hhccccccce-eeccc
Q 000983 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRN-LELEE 670 (1199)
Q Consensus 594 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~-L~l~~ 670 (1199)
++++.++++++.+|..+ ..++++|+|++|+|+.+|. .|.+|++|++|+|++|.+.+.+|. .|.++++|.+ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56778888888888776 3678889999998888876 588889999999988886676765 4677888775 44455
Q ss_pred ccccccccC-CCCcCCccccCccCeEEec
Q 000983 671 MFWFKCSTL-PAGIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 671 n~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 698 (1199)
|.+ ..+ |..++.+++|++|++.++.
T Consensus 90 N~l---~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 90 NNL---LYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TTC---CEECTTSBCCCTTCCEEEEEEEC
T ss_pred Ccc---cccCchhhhhccccccccccccc
Confidence 544 344 4556888888888887753
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=4e-13 Score=152.42 Aligned_cols=235 Identities=20% Similarity=0.176 Sum_probs=133.6
Q ss_pred cEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecCC--CCCcccccccccC
Q 000983 778 EELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWPN--DEDCRFLGRLKIS 853 (1199)
Q Consensus 778 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~l~ 853 (1199)
+.++.+++....+|..+ .+++++|+|++|.+.... .+.++++|++|+|++|...+.++. +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~---------- 77 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN---------- 77 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS----------
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc----------
Confidence 34555666667777654 467888888888777665 578888888888888876555441 111
Q ss_pred CCCCCCcCCCcCCCcCeEEEecccccccCCCCCchheeeeeccccccchhccccccccCCCCCCcccccccccccccEEE
Q 000983 854 NCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMK 933 (1199)
Q Consensus 854 ~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~ 933 (1199)
++++..+.+.++.++..++.- .+..++
T Consensus 78 -----------L~~l~~~l~~~~N~l~~l~~~------------------------------------~f~~l~------ 104 (350)
T 4ay9_X 78 -----------LPKLHEIRIEKANNLLYINPE------------------------------------AFQNLP------ 104 (350)
T ss_dssp -----------CTTCCEEEEEEETTCCEECTT------------------------------------SBCCCT------
T ss_pred -----------chhhhhhhcccCCcccccCch------------------------------------hhhhcc------
Confidence 223333333333333322110 001111
Q ss_pred ecCCCCCCCCCCCCCCCcEEEccccccCCCCCccc--ccccceeeecCCC-CCccc-cCCCCC-CCCCEEeecCCCCCCC
Q 000983 934 AINCPKLRGLPQIFAPQKLEISGCDLLSTLPNSEF--SQRLQLLALEGCP-DGTLV-RAIPET-SSLNFLILSKISNLDS 1008 (1199)
Q Consensus 934 l~~c~~L~~l~~~~~l~~L~l~~~~~~~~~p~~~~--~~~L~~L~l~~~~-~~~~~-~~l~~l-~sL~~L~L~~n~~l~~ 1008 (1199)
+|+.|++++|... .++...+ ..++..|++.++. ....+ ..+..+ ..|+.|++++|.+...
T Consensus 105 --------------~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 105 --------------NLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp --------------TCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred --------------ccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 2244444444422 2222211 2344455554443 22222 223333 3466777777765443
Q ss_pred CCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCC
Q 000983 1009 FPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLK 1088 (1199)
Q Consensus 1009 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~ 1088 (1199)
.+......+|+.|++.+|..++.+|. ..|.++++|++|++++|. ++.+|...+ .+|+.|.+.+|.+++.+|. +.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~lp~~~~-~~L~~L~~l~~~~l~~lP~---l~ 243 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSLPSYGL-ENLKKLRARSTYNLKKLPT---LE 243 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCCCSSSC-TTCCEEECTTCTTCCCCCC---TT
T ss_pred ChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCccChhhh-ccchHhhhccCCCcCcCCC---ch
Confidence 33334456777777777666777775 456777777777777764 777766443 5777777777777777774 67
Q ss_pred CCCCCCceeecC
Q 000983 1089 SLNSLKDFYIED 1100 (1199)
Q Consensus 1089 ~l~sL~~L~i~~ 1100 (1199)
++++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 777777777765
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=9.7e-13 Score=143.28 Aligned_cols=192 Identities=26% Similarity=0.284 Sum_probs=143.3
Q ss_pred cccEEEecCCCCCCCCCCC--CCCCcEEEccccccCCCCC-cccccccceeeecCCCCCcccc-CCCCCCCCCEEeecCC
Q 000983 928 TLLEMKAINCPKLRGLPQI--FAPQKLEISGCDLLSTLPN-SEFSQRLQLLALEGCPDGTLVR-AIPETSSLNFLILSKI 1003 (1199)
Q Consensus 928 ~L~~L~l~~c~~L~~l~~~--~~l~~L~l~~~~~~~~~p~-~~~~~~L~~L~l~~~~~~~~~~-~l~~l~sL~~L~L~~n 1003 (1199)
..+.+++++ ..++.+|.. ..++.|++++|......+. ...+++|++|++++|.....+. .+..+++|++|++++|
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccC-CCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 345555544 345566642 3578899999875443332 2457899999999998555554 3577899999999999
Q ss_pred CCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCc--cCCcceEEeccCCCCcc
Q 000983 1004 SNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL--PTSLKCLIIASCSGLKS 1080 (1199)
Q Consensus 1004 ~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~l~~c~~L~~ 1080 (1199)
.+....+. +..+++|++|++++|. ++.++. ..+..+++|++|++++|. ++.++...+ .++|++|++++|. ++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 171 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPP-RVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-LKR 171 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSC
T ss_pred cCCcCCHhHcccccCCCEEECCCCc-cCeeCH-HHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCc-CcE
Confidence 86654443 5788999999999987 666654 468899999999999975 667776543 3899999999885 666
Q ss_pred cCCCCCCCCCCCCCceeecCCCCCCCCCCCCC--CCCcCeEEccCCcc
Q 000983 1081 LGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGL--PENLQHLVIQNCPL 1126 (1199)
Q Consensus 1081 lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~l--~~sL~~L~i~~c~~ 1126 (1199)
++. ..+..+++|++|++++| .++.+|...+ .++|+.|++++||.
T Consensus 172 ~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPE-GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eCh-hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 765 35888999999999999 7888886533 47899999999875
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=4.3e-15 Score=171.67 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=32.9
Q ss_pred hccCCcccEEecCCCCCc----ccCccc-------ccCccccEEeccCCCccc-----cchhhcccCcccEEecCCCCc
Q 000983 587 FHQLKYLRLLDLSSSTLT----VLPDSV-------EELKLLRYLDLSRTEIKV-----LPNSICNLYNLQTLKLIGCIW 649 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~----~lp~~i-------~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~ 649 (1199)
|..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.+.. +|..+.++++|++|+|++|.+
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 445555555555554332 223222 455555555555555543 455555555555555555553
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=7.5e-13 Score=144.28 Aligned_cols=169 Identities=25% Similarity=0.372 Sum_probs=99.6
Q ss_pred CcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEccCCC
Q 000983 950 QKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKD 1028 (1199)
Q Consensus 950 ~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~~ 1028 (1199)
+.|++++|. ...++....+++|++|++++|..... ..+..+++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 44 ~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~- 120 (272)
T 3rfs_A 44 DQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ- 120 (272)
T ss_dssp CEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred eeeeeCCCC-cccccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-
Confidence 444555443 23344444556677777776663332 3566667777777777765543333 4666777777777766
Q ss_pred CCCCcccccCCCCCCcceEEecCCCCCCcCCCCCc--cCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCC
Q 000983 1029 LVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL--PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQS 1106 (1199)
Q Consensus 1029 L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~ 1106 (1199)
++.++. ..+.++++|++|++++|. ++.++...+ .++|+.|++++|. ++.++. ..+..+++|++|++++| .++.
T Consensus 121 l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~ 195 (272)
T 3rfs_A 121 LQSLPD-GVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQLKDLRLYQN-QLKS 195 (272)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCSC
T ss_pred CCccCH-HHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCH-HHhcCCccCCEEECCCC-cCCc
Confidence 444443 346667777777777763 555554332 2667777777764 555544 24566777777777777 4555
Q ss_pred CCCC--CCCCCcCeEEccCCcc
Q 000983 1107 FPED--GLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1107 lp~~--~l~~sL~~L~i~~c~~ 1126 (1199)
++.. +..++|++|++++|+.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred cCHHHHhCCcCCCEEEccCCCc
Confidence 5543 2346777777777654
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=8.9e-15 Score=165.73 Aligned_cols=248 Identities=17% Similarity=0.185 Sum_probs=166.1
Q ss_pred eeEEEEEeccCCCCccccccCC--CCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcc--cCcccccCcc
Q 000983 540 TRHVSLLCKHVEKPALSVVENS--KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTV--LPDSVEELKL 615 (1199)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~--lp~~i~~l~~ 615 (1199)
.+++.+..+.+. ...+..+ ++++.+.+. .+.+...++. +..+++|++|+|++|.+.. +|..+..+++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~-----~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCP-----RSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECT-----TCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcC-----Cccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 466777655544 2224444 788888886 2333333222 4478999999999999873 8888999999
Q ss_pred ccEEeccCCCcc-ccchhhcccCcccEEecCCCCccc--ccchhhccccccceeecccc-cccccccCCCCcCCcc-ccC
Q 000983 616 LRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIM--ELPKDLANLVKLRNLELEEM-FWFKCSTLPAGIGKLT-NLH 690 (1199)
Q Consensus 616 Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~n-~~~~~~~lp~~i~~l~-~L~ 690 (1199)
|++|+|++|.+. ..|..++++++|++|++++|..+. .+|..+..+++|++|++++| .+.. ..+|..+..++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-HHHHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-HHHHHHHHhcccCCC
Confidence 999999999988 678899999999999999994344 47878899999999999999 6642 23456677888 999
Q ss_pred ccCeEEec-ccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhh
Q 000983 691 NLHVFRVG-SKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLE 769 (1199)
Q Consensus 691 ~L~l~~~~-~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1199)
+|++.++. ..+.. .....+..+++|+.|+++.|... ....+.
T Consensus 199 ~L~l~~~~~~~~~~-------------------------~l~~~~~~~~~L~~L~l~~~~~l------------~~~~~~ 241 (336)
T 2ast_B 199 QLNLSGYRKNLQKS-------------------------DLSTLVRRCPNLVHLDLSDSVML------------KNDCFQ 241 (336)
T ss_dssp EEECCSCGGGSCHH-------------------------HHHHHHHHCTTCSEEECTTCTTC------------CGGGGG
T ss_pred EEEeCCCcccCCHH-------------------------HHHHHHhhCCCCCEEeCCCCCcC------------CHHHHH
Confidence 99887653 11111 11112334456777777666421 011223
Q ss_pred ccCCCCCCcEEEEeecCCCCCCc---ccccCccCceeEEEEeCccCccccCcCCc-CCcCeEEecCCCCceecC
Q 000983 770 DLQPHPNLEELQIFNYFGNSLPQ---WMRDGRLQNLVSLTLKGCTNCRILSLGQL-SSLRVLNIKGMLELEKWP 839 (1199)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~ 839 (1199)
.+..+++|+.|+++++. ...+. .+ ..+++|+.|++++| ... ..+..+ .+|..|++++|......+
T Consensus 242 ~l~~l~~L~~L~l~~~~-~~~~~~~~~l--~~~~~L~~L~l~~~-i~~-~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCY-DIIPETLLEL--GEIPTLKTLQVFGI-VPD-GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGGCTTCCEEECTTCT-TCCGGGGGGG--GGCTTCCEEECTTS-SCT-TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHhCCCCCCEeeCCCCC-CCCHHHHHHH--hcCCCCCEEeccCc-cCH-HHHHHHHhhCcceEEecccCccccC
Confidence 45566888888888764 22222 23 45889999999988 222 123333 246677788776555444
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=3.2e-13 Score=150.00 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=149.5
Q ss_pred cccccccccEEEecCCCCCCCC---CCCCCCCcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEE
Q 000983 922 LLHSFQTLLEMKAINCPKLRGL---PQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFL 998 (1199)
Q Consensus 922 ~~~~~~~L~~L~l~~c~~L~~l---~~~~~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L 998 (1199)
....+++|+.|.+.+|. ++.+ ..+.+++.|++++|.... ++....+++|++|++++|..... ..+..+++|+.|
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTL 112 (308)
T ss_dssp CHHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEE
T ss_pred cHHHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCcCCCc-hhhcCCCCCCEE
Confidence 34567899999998874 4444 445688999999997544 44356678999999999985444 468889999999
Q ss_pred eecCCCCCCCCCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCC
Q 000983 999 ILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGL 1078 (1199)
Q Consensus 999 ~L~~n~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L 1078 (1199)
++++|.+.. ++.+..+++|++|++++|. ++.++ .+..+++|++|++++|. ++.++...-.++|+.|++++|. +
T Consensus 113 ~l~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l 185 (308)
T 1h6u_A 113 DLTSTQITD-VTPLAGLSNLQVLYLDLNQ-ITNIS---PLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNK-I 185 (308)
T ss_dssp ECTTSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG---GGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-C
T ss_pred ECCCCCCCC-chhhcCCCCCCEEECCCCc-cCcCc---cccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCc-c
Confidence 999998654 5668899999999999997 66665 37889999999999985 6666543333899999999986 6
Q ss_pred cccCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCcCeEEccCCcc
Q 000983 1079 KSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1079 ~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~l~~sL~~L~i~~c~~ 1126 (1199)
+.++. +..+++|++|++++| .++.++.-...++|+.|++++|+.
T Consensus 186 ~~~~~---l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 186 SDISP---LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCGG---GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred CcChh---hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCee
Confidence 77764 788999999999999 677776545568999999999875
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=1.4e-13 Score=151.45 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=74.2
Q ss_pred ccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceee
Q 000983 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1199)
Q Consensus 588 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 667 (1199)
..+++|+.|++++|.+..+|. +..+++|++|+|++|.++.+|. ++++++|++|++++|. +..+| .+..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 356778888888888887754 7788888888888888887776 8888888888888877 44454 478888888888
Q ss_pred cccccccccccCCCCcCCccccCccCeEE
Q 000983 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
+++|.+..+ ..++.+++|+.|++++
T Consensus 119 L~~n~i~~~----~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 119 LEHNGISDI----NGLVHLPQLESLYLGN 143 (291)
T ss_dssp CTTSCCCCC----GGGGGCTTCCEEECCS
T ss_pred CCCCcCCCC----hhhcCCCCCCEEEccC
Confidence 888765432 3455666666666544
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=6.5e-13 Score=142.90 Aligned_cols=173 Identities=20% Similarity=0.197 Sum_probs=123.1
Q ss_pred CcccEEecCCCCCcccCcccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeecc
Q 000983 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (1199)
...++++++++.++.+|..+. .+|++|+|++|.+..++. .|+++++|++|++++|.+....|..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 467889999999999998776 689999999999987754 68999999999999998666666678899999999999
Q ss_pred cccccccccCC-CCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEec
Q 000983 670 EMFWFKCSTLP-AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1199)
Q Consensus 670 ~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 748 (1199)
+|.+. .+| ..++.+++|++|++.++.
T Consensus 92 ~n~l~---~~~~~~~~~l~~L~~L~L~~N~-------------------------------------------------- 118 (251)
T 3m19_A 92 NNQLA---SLPLGVFDHLTQLDKLYLGGNQ-------------------------------------------------- 118 (251)
T ss_dssp TSCCC---CCCTTTTTTCTTCCEEECCSSC--------------------------------------------------
T ss_pred CCccc---ccChhHhcccCCCCEEEcCCCc--------------------------------------------------
Confidence 98664 344 345677777777665431
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCc-ccccCccCceeEEEEeCccCcccc--CcCCcCCcC
Q 000983 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQ-WMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLR 825 (1199)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~ 825 (1199)
.....+ ..+..+++|+.|+++++....+|. .+ ..+++|+.|+|++|.+.... .+..+++|+
T Consensus 119 -l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 119 -LKSLPS-------------GVFDRLTKLKELRLNTNQLQSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp -CCCCCT-------------TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -CCCcCh-------------hHhccCCcccEEECcCCcCCccCHHHc--CcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 110000 123345566677776666556655 33 45677777777777766555 566777777
Q ss_pred eEEecCCCC
Q 000983 826 VLNIKGMLE 834 (1199)
Q Consensus 826 ~L~L~~~~~ 834 (1199)
+|++++|+.
T Consensus 183 ~L~l~~N~~ 191 (251)
T 3m19_A 183 TITLFGNQF 191 (251)
T ss_dssp EEECCSCCB
T ss_pred EEEeeCCce
Confidence 777777753
No 101
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=3.3e-12 Score=147.45 Aligned_cols=289 Identities=15% Similarity=0.059 Sum_probs=179.8
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc--------cceeEEEEecCCC-C
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH--------FESRMWVCVTVDY-D 241 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~~~~-~ 241 (1199)
..++||+.+++++..++.... .....+.+.|+|++|+||||||+++++. .... ....+|+.+.... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCC
Confidence 679999999999988775421 1123558899999999999999999983 2221 2345788877766 7
Q ss_pred hHHHHHHHHHhcccCCCC--CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccC-hHH-HHHhhhCCCCCcEEEEecCCc
Q 000983 242 LPRILKGMIEFHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK-WEP-LQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 242 ~~~~~~~i~~~~~~~~~~--~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~-~~~-l~~~l~~~~~gs~iivTtR~~ 317 (1199)
...++..++..+...... ......+...+.+.++.++.+|||||++...... .+. +...+... .+..||+||+..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 888888888877332211 3334566677777787776799999996533222 233 33333333 678899999875
Q ss_pred hhh----hhh--cCCCceeCCCCChhHHHHHHHHHhc---CCCCCCccccchhHHHHHHHHHHhcC---CChH-HHHHHH
Q 000983 318 RVS----QIM--GIRSPYLLEYLPEDQCWSIFKKIAF---NQGNFSSRMQQQNLEAIGREIVGKCK---GLPL-AVKAIA 384 (1199)
Q Consensus 318 ~v~----~~~--~~~~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~ 384 (1199)
... ..+ .....+++.+++.++..++|...+. .... .. .+..+.|++.++ |.|. |+.++.
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-----~~---~~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT-----YD---DEILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS-----CC---SHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC-----cC---HHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 321 111 1123899999999999999998753 2111 11 244566777776 8886 444433
Q ss_pred Hhh--c---cCCCHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhccCCCCcccCHHHHHHHHHH
Q 000983 385 GFL--R---KYDDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMA 459 (1199)
Q Consensus 385 ~~l--~---~~~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a 459 (1199)
... + ..-+.+.+..++.... ...+.-++..|+++.|..+..++....+..+. ... .-++
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~--~~~~ 310 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMY--TDLC 310 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHH--HHHH
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHH--HHHH
Confidence 322 2 1235677777765421 12355677889988888877776611101111 011 1122
Q ss_pred ccc-cccCCCCCCccHHHHHHHHHHHHHhccCccccc
Q 000983 460 EAL-IQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN 495 (1199)
Q Consensus 460 eg~-i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 495 (1199)
+.+ +. ..+ .....+++..|..+++++...
T Consensus 311 ~~~g~~------~~~-~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 311 NKFKQK------PLS-YRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHTTCC------CCC-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHcCCC------CCC-HHHHHHHHHHHHhCCCEEEEe
Confidence 211 11 111 456778999999999998653
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=4.5e-12 Score=136.32 Aligned_cols=169 Identities=23% Similarity=0.308 Sum_probs=124.7
Q ss_pred CcEEEccccccCCCCCcccccccceeeecCCCCCc-cccCCCCCCCCCEEeecCCCCCCCCCC-CCCCCccceEEEccCC
Q 000983 950 QKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGT-LVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCK 1027 (1199)
Q Consensus 950 ~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~ 1027 (1199)
+.++++++. +..+|.. ..++++.|++++|.... .+..+..+++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 17 ~~l~~~~~~-l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKS-LDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCC-CSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCC-ccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 445555544 3445543 33678888888888433 344678888999999999887765554 5788899999999887
Q ss_pred CCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCc--cCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCC
Q 000983 1028 DLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL--PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQ 1105 (1199)
Q Consensus 1028 ~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~ 1105 (1199)
++.++. ..+..+++|++|++++|. ++.++...+ .++|++|++++|. ++.++. ..+..+++|++|++++| .++
T Consensus 95 -l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~ 168 (251)
T 3m19_A 95 -LASLPL-GVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPA-GAFDKLTNLQTLSLSTN-QLQ 168 (251)
T ss_dssp -CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCS
T ss_pred -ccccCh-hHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCH-HHcCcCcCCCEEECCCC-cCC
Confidence 666654 467888999999999874 667766543 3889999999885 677765 35888999999999998 677
Q ss_pred CCCCCC--CCCCcCeEEccCCcc
Q 000983 1106 SFPEDG--LPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1106 ~lp~~~--l~~sL~~L~i~~c~~ 1126 (1199)
.+|... ..++|++|++++|+.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCHHHHhCCCCCCEEEeeCCce
Confidence 777642 347899999998876
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=2.9e-14 Score=164.65 Aligned_cols=242 Identities=16% Similarity=0.101 Sum_probs=159.1
Q ss_pred HHHhccCCcccEEecCCCCCcc-----cCcccccCccccEEeccCCCcc----ccchhh-------cccCcccEEecCCC
Q 000983 584 DKIFHQLKYLRLLDLSSSTLTV-----LPDSVEELKLLRYLDLSRTEIK----VLPNSI-------CNLYNLQTLKLIGC 647 (1199)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~ 647 (1199)
...+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3456778888888888887763 4455778888888888887554 334443 67888888888888
Q ss_pred Cccc----ccchhhccccccceeeccccccccc--ccCCCCcCCc---------cccCccCeEEecccCcCCh---hhhc
Q 000983 648 IWIM----ELPKDLANLVKLRNLELEEMFWFKC--STLPAGIGKL---------TNLHNLHVFRVGSKSGYRI---EELK 709 (1199)
Q Consensus 648 ~~l~----~lp~~i~~L~~L~~L~l~~n~~~~~--~~lp~~i~~l---------~~L~~L~l~~~~~~~~~~~---~~l~ 709 (1199)
.+.. .+|..+..+++|++|+|++|.+... ..++..+..+ ++|++|+++++........ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 7554 4777888888888888888866421 1223333344 7888888876543212212 3455
Q ss_pred CCCCCCCceeeCCccccccc---ccc-ccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeec
Q 000983 710 ELPYLTGKLHISKLENAVNG---GEA-KLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNY 785 (1199)
Q Consensus 710 ~l~~L~~~L~l~~l~~~~~~---~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 785 (1199)
.+++|+ .|.+....-...+ ... .+..+++|+.|++++|... ......++..+..+++|+.|++++|
T Consensus 185 ~~~~L~-~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~---------~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 185 SHRLLH-TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT---------HLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HCTTCC-EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH---------HHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred hCCCcC-EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC---------cHHHHHHHHHHccCCCcCEEECCCC
Confidence 666666 5555443222111 122 5667788888888877542 1112345566777889999999977
Q ss_pred CCCCC-----CcccccCccCceeEEEEeCccCccc----c--Cc-CCcCCcCeEEecCCCCc
Q 000983 786 FGNSL-----PQWMRDGRLQNLVSLTLKGCTNCRI----L--SL-GQLSSLRVLNIKGMLEL 835 (1199)
Q Consensus 786 ~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~~----~--~l-~~l~~L~~L~L~~~~~~ 835 (1199)
..... |.++..+.+++|+.|+|++|.+... + .+ .++++|++|++++|...
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 65443 4444223478999999999988772 2 34 56899999999998654
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=3e-14 Score=162.63 Aligned_cols=247 Identities=13% Similarity=0.073 Sum_probs=134.4
Q ss_pred cchhhhHHHHhccCCcccEEecCCCCCcccC-----cccccCc-cccEEeccCCCcccc-chhhccc-----CcccEEec
Q 000983 577 KDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-----DSVEELK-LLRYLDLSRTEIKVL-PNSICNL-----YNLQTLKL 644 (1199)
Q Consensus 577 ~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L 644 (1199)
+.+...++.++...++|++|+|++|.+...+ ..+..++ +|++|+|++|.+... +..+..+ ++|++|++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 3445556666666677888888888877655 5567777 788888888887754 5556665 78888888
Q ss_pred CCCCcccccchhhcc----c-cccceeeccccccccccc--CCCCcCC-ccccCccCeEEecccCcCChhhhcCCCCCCC
Q 000983 645 IGCIWIMELPKDLAN----L-VKLRNLELEEMFWFKCST--LPAGIGK-LTNLHNLHVFRVGSKSGYRIEELKELPYLTG 716 (1199)
Q Consensus 645 ~~~~~l~~lp~~i~~----L-~~L~~L~l~~n~~~~~~~--lp~~i~~-l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 716 (1199)
++|.+....+..+.. + ++|++|++++|.+..... +...+.. .++|++|+++++. .+......+.
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~------- 159 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELI------- 159 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHH-------
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHH-------
Confidence 888755555554443 3 788888888876543210 0011223 2467777665532 1111111110
Q ss_pred ceeeCCccccccccccccccc-cccceeEEEecCCCCCCCCCCCCccchHHHhhccCCC-CCCcEEEEeecCCCC-----
Q 000983 717 KLHISKLENAVNGGEAKLSEK-ESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPH-PNLEELQIFNYFGNS----- 789 (1199)
Q Consensus 717 ~L~l~~l~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~----- 789 (1199)
..+... .+|+.|++++|..... ....+...+... ++|+.|++++|....
T Consensus 160 ---------------~~l~~~~~~L~~L~Ls~n~l~~~---------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 160 ---------------QILAAIPANVNSLNLRGNNLASK---------NCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp ---------------HHHHTSCTTCCEEECTTSCGGGS---------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred ---------------HHHhcCCccccEeeecCCCCchh---------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 111112 2566666665543211 111222233333 367777777655443
Q ss_pred CCcccccCccCceeEEEEeCccCcccc------CcCCcCCcCeEEecCCCCc-------e-ecCCCCCcccccccccCCC
Q 000983 790 LPQWMRDGRLQNLVSLTLKGCTNCRIL------SLGQLSSLRVLNIKGMLEL-------E-KWPNDEDCRFLGRLKISNC 855 (1199)
Q Consensus 790 ~p~~~~~~~l~~L~~L~L~~~~~~~~~------~l~~l~~L~~L~L~~~~~~-------~-~~~~~~~~~~L~~L~l~~~ 855 (1199)
++..+. ...++|+.|+|++|.+.... .+..+++|++|++++|... . ....+..++.|+.+++++|
T Consensus 216 l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 216 LAYIFS-SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHH-HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHh-cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 333331 11346777777777665532 3456677777777776410 0 1112334555556666655
Q ss_pred C
Q 000983 856 P 856 (1199)
Q Consensus 856 ~ 856 (1199)
+
T Consensus 295 ~ 295 (362)
T 3goz_A 295 E 295 (362)
T ss_dssp B
T ss_pred c
Confidence 4
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=4.7e-13 Score=161.49 Aligned_cols=101 Identities=24% Similarity=0.253 Sum_probs=68.0
Q ss_pred ccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceee
Q 000983 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1199)
Q Consensus 588 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 667 (1199)
..+..|+.|+|++|.+..+| .+..+++|++|+|++|.+..+|. +++|++|+.|+|++|. +..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 35666777777777777765 47777777777777777777665 7777777777777776 34444 577777777777
Q ss_pred cccccccccccCCCCcCCccccCccCeEE
Q 000983 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
|++|.+.. + +.++.+++|+.|++++
T Consensus 116 Ls~N~l~~---l-~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 116 LEHNGISD---I-NGLVHLPQLESLYLGN 140 (605)
T ss_dssp CTTSCCCC---C-GGGGGCTTCSEEECCS
T ss_pred ecCCCCCC---C-ccccCCCccCEEECCC
Confidence 77775543 2 3455666666666544
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=7.5e-13 Score=136.42 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=53.2
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
.+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+.++++|++|++++|.+....|..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4556666777776666666 5666667777777766655554 5666666777777666654545666666666666666
Q ss_pred ccccc
Q 000983 669 EEMFW 673 (1199)
Q Consensus 669 ~~n~~ 673 (1199)
++|.+
T Consensus 120 s~n~i 124 (197)
T 4ezg_A 120 SHSAH 124 (197)
T ss_dssp CSSBC
T ss_pred cCCcc
Confidence 66644
No 107
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=1.4e-11 Score=142.36 Aligned_cols=291 Identities=12% Similarity=0.051 Sum_probs=179.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc------cceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH------FESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~~~~~~~ 244 (1199)
..++||+.+++++..++...- .......+.|+|++|+||||+|+++++. .... -...+|+.+....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 679999999999999885431 1133557889999999999999999973 3221 12356788777778888
Q ss_pred HHHHHHHhcccCCCC-CCcHHHHHHHHHHHh--CCCeEEEEEecCCCcCcc--ChHHHHHhhhCC-----CCCcEEEEec
Q 000983 245 ILKGMIEFHSKMEQS-TSSISLLETRLLEFL--TGQRFLLVLDDVWNEDYR--KWEPLQQLLKQG-----HKGSRVLVTS 314 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~l--~~k~~LlVlDdvw~~~~~--~~~~l~~~l~~~-----~~gs~iivTt 314 (1199)
++..++..++..... ..+...+...+.+.+ .+++.+|||||++..... ..+.+...+... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 899999888654332 334555566666666 456899999999653322 223343333221 4456788888
Q ss_pred CCchhhh----h-hcC-C-CceeCCCCChhHHHHHHHHHhc---CCCCCCccccchhHHHHHHHHHHhcC---CChH-HH
Q 000983 315 RTARVSQ----I-MGI-R-SPYLLEYLPEDQCWSIFKKIAF---NQGNFSSRMQQQNLEAIGREIVGKCK---GLPL-AV 380 (1199)
Q Consensus 315 R~~~v~~----~-~~~-~-~~~~l~~L~~~~~~~lf~~~a~---~~~~~~~~~~~~~~~~~~~~i~~~c~---glPL-ai 380 (1199)
+...... . ... . ..+.+.+++.++..+++...+. .... .. .+..+.|+++++ |.|- |+
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV-----LD---PDVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT-----BC---SSHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC-----CC---HHHHHHHHHHHHHhccCHHHHH
Confidence 7653211 1 111 1 3688999999999999988753 2211 11 234566777777 9993 33
Q ss_pred HHHHHhhc-----c--CCCHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhc-cCCCCcccCHHH
Q 000983 381 KAIAGFLR-----K--YDDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCS-IFPKSYAFDKAE 452 (1199)
Q Consensus 381 ~~~~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~~ 452 (1199)
.++..+.. . .-+.+.+..++..... ..+.-++..|+++.+..+..++ ++-+...+....
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~ 313 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGE 313 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 33332221 1 1245666666653211 1345567889988888777666 443223444454
Q ss_pred HHHHHHH----ccccccCCCCCCccHHHHHHHHHHHHHhccCcccc
Q 000983 453 MVKFWMA----EALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSS 494 (1199)
Q Consensus 453 li~~W~a----eg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 494 (1199)
+.+.... .| +. ..+ ......+++.|...++++..
T Consensus 314 ~~~~~~~~~~~~~-~~------~~~-~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 314 IYERYKELTSTLG-LE------HVT-LRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHHTT-CC------CCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC-CC------CCC-HHHHHHHHHHHHhCCCeEEE
Confidence 4443321 12 11 111 56678899999999999874
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=3.6e-13 Score=162.53 Aligned_cols=192 Identities=22% Similarity=0.195 Sum_probs=146.4
Q ss_pred CCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecc
Q 000983 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1199)
Q Consensus 590 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (1199)
+..+..+.+..+.+..++. +..|.+|++|++++|.|..+| .++.|++|++|+|++|. +..+|. +..+++|++|+|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECc
Confidence 3445556777777776543 678999999999999999997 59999999999999998 445554 9999999999999
Q ss_pred cccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecC
Q 000983 670 EMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSN 749 (1199)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~ 749 (1199)
+|.+.. +| .++.+++|+.|+++++.... + ..+..+++|+.|+|+.|.
T Consensus 96 ~N~l~~---l~-~l~~l~~L~~L~Ls~N~l~~---l--------------------------~~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 96 ENKIKD---LS-SLKDLKKLKSLSLEHNGISD---I--------------------------NGLVHLPQLESLYLGNNK 142 (605)
T ss_dssp SSCCCC---CT-TSTTCTTCCEEECTTSCCCC---C--------------------------GGGGGCTTCSEEECCSSC
T ss_pred CCCCCC---Ch-hhccCCCCCEEEecCCCCCC---C--------------------------ccccCCCccCEEECCCCc
Confidence 997643 33 68889999999886542110 1 124455677888887775
Q ss_pred CCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCCcCeEEe
Q 000983 750 NRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNI 829 (1199)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L 829 (1199)
.... ..+..+++|+.|+|++|....++. + ..+++|+.|+|++|.+.....+..+++|+.|+|
T Consensus 143 l~~l---------------~~l~~l~~L~~L~Ls~N~l~~~~~-l--~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 143 ITDI---------------TVLSRLTKLDTLSLEDNQISDIVP-L--AGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 204 (605)
T ss_dssp CCCC---------------GGGGSCTTCSEEECCSSCCCCCGG-G--TTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred cCCc---------------hhhcccCCCCEEECcCCcCCCchh-h--ccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence 5421 346677899999999887777665 4 568899999999998776657888899999999
Q ss_pred cCCCCce
Q 000983 830 KGMLELE 836 (1199)
Q Consensus 830 ~~~~~~~ 836 (1199)
++|....
T Consensus 205 ~~N~l~~ 211 (605)
T 1m9s_A 205 FSQECLN 211 (605)
T ss_dssp CSEEEEC
T ss_pred cCCcCcC
Confidence 8886543
No 109
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.36 E-value=4.1e-11 Score=138.58 Aligned_cols=294 Identities=13% Similarity=0.058 Sum_probs=183.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccccc-ceeEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF-ESRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 249 (1199)
+.++||+.+++++..++...........+.+.|+|++|+||||||+.+++. ..... ...+|+.++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 579999999999999886521001122348899999999999999999973 32221 245677777777788888888
Q ss_pred HHhcccCCCC-CCcHHHHHHHHHHHhC--CCeEEEEEecCCCcCccChHHHHHhhhCCC----CCcEEEEecCCchhhhh
Q 000983 250 IEFHSKMEQS-TSSISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKWEPLQQLLKQGH----KGSRVLVTSRTARVSQI 322 (1199)
Q Consensus 250 ~~~~~~~~~~-~~~~~~l~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~v~~~ 322 (1199)
+..++..... ......+...+.+.+. +++.+|||||++..+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 8887654322 3344555555555553 668999999997654444455555543211 46778888876643322
Q ss_pred hc-------CCCceeCCCCChhHHHHHHHHHhcC---CCCCCccccchhHHHHHHHHHHhc---------CCChHHHHHH
Q 000983 323 MG-------IRSPYLLEYLPEDQCWSIFKKIAFN---QGNFSSRMQQQNLEAIGREIVGKC---------KGLPLAVKAI 383 (1199)
Q Consensus 323 ~~-------~~~~~~l~~L~~~~~~~lf~~~a~~---~~~~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~ 383 (1199)
+. ....+.+.+++.++..+++...+.. .... -.+..+.|++.+ +|.|-.+..+
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY--------SEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS--------CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC--------CHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 21 1236899999999999999887642 1111 135667788888 7887544433
Q ss_pred HHh-hc-----cC--CCHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhccCC---CCcccCHHH
Q 000983 384 AGF-LR-----KY--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFP---KSYAFDKAE 452 (1199)
Q Consensus 384 ~~~-l~-----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~ 452 (1199)
... .. .. -+.+....+..... ...+.-.+..|+.+.+.++..++.+. .+-.+....
T Consensus 247 l~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~ 313 (389)
T 1fnn_A 247 LYRSAYAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGD 313 (389)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHH
Confidence 322 21 11 12333333333210 12234456778888888887777654 221455666
Q ss_pred HHHHHHH----ccccccCCCCCCccHHHHHHHHHHHHHhccCccccc
Q 000983 453 MVKFWMA----EALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN 495 (1199)
Q Consensus 453 li~~W~a----eg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 495 (1199)
+...+.. .|.. ..+ ......++++|.++++|....
T Consensus 314 i~~~~~~~~~~~~~~-------~~~-~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 314 AEESYKIVCEEYGER-------PRV-HSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHHHHHTTCC-------CCC-HHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHcCCC-------CCC-HHHHHHHHHHHHhCCCeEEee
Confidence 6655533 1211 111 455678999999999998754
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=2.7e-12 Score=143.03 Aligned_cols=192 Identities=14% Similarity=0.145 Sum_probs=87.6
Q ss_pred ccccEEEecCCCCCCCC------CCCCCCCcEEEccccccCCCCCc-----ccccccceeeecCCCCCc-cccCCCCCCC
Q 000983 927 QTLLEMKAINCPKLRGL------PQIFAPQKLEISGCDLLSTLPNS-----EFSQRLQLLALEGCPDGT-LVRAIPETSS 994 (1199)
Q Consensus 927 ~~L~~L~l~~c~~L~~l------~~~~~l~~L~l~~~~~~~~~p~~-----~~~~~L~~L~l~~~~~~~-~~~~l~~l~s 994 (1199)
++|++|++.+|.-.... ....+++.|++++|......+.. ..+++|++|++++|.... .+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 44666666655422222 22334555566555544333211 124555555555555322 2234455555
Q ss_pred CCEEeecCCCCCCC--C-CC--CCCCCccceEEEccCCCCCCCccc--ccCCCCCCcceEEecCCCCCCcCCCC--Cc--
Q 000983 995 LNFLILSKISNLDS--F-PR--WPNLPGLKALYIRDCKDLVSLSGE--GALQSLTSLNLLSIRGCPKLETLPDE--GL-- 1063 (1199)
Q Consensus 995 L~~L~L~~n~~l~~--~-~~--~~~l~~L~~L~l~~c~~L~~l~~~--~~l~~l~~L~~L~l~~c~~l~~l~~~--~~-- 1063 (1199)
|++|++++|.+.+. + +. +..+++|++|++++|. ++.++.. ..+.++++|++|++++|......|.. .+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555554321 1 11 1345555555555554 3333310 01234455555555555422222221 11
Q ss_pred cCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCcCeEEccCCc
Q 000983 1064 PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCP 1125 (1199)
Q Consensus 1064 ~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~l~~sL~~L~i~~c~ 1125 (1199)
+++|++|++++|. ++.+|. .+. ++|++|++++| .++.+|.....++|+.|++++|+
T Consensus 250 ~~~L~~L~Ls~N~-l~~lp~--~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAG-LEQVPK--GLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSC-CCSCCS--CCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCC-CCchhh--hhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 1455555555543 445544 332 45555555555 44444433333555555555554
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=1.8e-12 Score=154.46 Aligned_cols=179 Identities=20% Similarity=0.202 Sum_probs=133.2
Q ss_pred CcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeeccc
Q 000983 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 670 (1199)
.+|++|+|++|.++.+|..+. ++|++|+|++|.|+.+| +.+++|++|++++|.+ ..+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCC
Confidence 489999999999999998774 89999999999999999 5689999999999984 45887 665 999999999
Q ss_pred ccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCC
Q 000983 671 MFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNN 750 (1199)
Q Consensus 671 n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~ 750 (1199)
|.+. .+|. .+++|+.|+++++.. ++ ++. .+++|+.|+++.|..
T Consensus 130 N~l~---~lp~---~l~~L~~L~Ls~N~l-~~--------lp~----------------------~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 130 NQLT---MLPE---LPALLEYINADNNQL-TM--------LPE----------------------LPTSLEVLSVRNNQL 172 (571)
T ss_dssp SCCS---CCCC---CCTTCCEEECCSSCC-SC--------CCC----------------------CCTTCCEEECCSSCC
T ss_pred CcCC---CCCC---cCccccEEeCCCCcc-Cc--------CCC----------------------cCCCcCEEECCCCCC
Confidence 9664 4666 678899988876421 11 000 235677888877755
Q ss_pred CCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCce-------eEEEEeCccCcccc-CcCCcC
Q 000983 751 RDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNL-------VSLTLKGCTNCRIL-SLGQLS 822 (1199)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~~-~l~~l~ 822 (1199)
.. .+ . +. ++|+.|++++|....+|. +. .+| +.|+|++|.+.... .+..++
T Consensus 173 ~~-lp-------------~-l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 173 TF-LP-------------E-LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLD 230 (571)
T ss_dssp SC-CC-------------C-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred CC-cc-------------h-hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCC
Confidence 42 11 1 22 688888888887778887 42 266 88888888877665 566788
Q ss_pred CcCeEEecCCCCcee
Q 000983 823 SLRVLNIKGMLELEK 837 (1199)
Q Consensus 823 ~L~~L~L~~~~~~~~ 837 (1199)
+|+.|+|++|.....
T Consensus 231 ~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 231 PTCTIILEDNPLSSR 245 (571)
T ss_dssp TTEEEECCSSSCCHH
T ss_pred CCCEEEeeCCcCCCc
Confidence 888888888865543
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=3.1e-12 Score=140.58 Aligned_cols=164 Identities=16% Similarity=0.248 Sum_probs=96.0
Q ss_pred CcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEccCCCC
Q 000983 950 QKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDL 1029 (1199)
Q Consensus 950 ~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~c~~L 1029 (1199)
+.|++++|. +..++....+++|++|++++|.....+. +..+++|++|++++|.+.. ++.+..+++|++|++++|. +
T Consensus 49 ~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-i 124 (291)
T 1h6t_A 49 DQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG-I 124 (291)
T ss_dssp CEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC-C
T ss_pred cEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCc-C
Confidence 444444443 2233444445666777777666444333 6666677777777765433 4556666777777777765 4
Q ss_pred CCCcccccCCCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCC
Q 000983 1030 VSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPE 1109 (1199)
Q Consensus 1030 ~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~ 1109 (1199)
+.++ .+..+++|++|++++|. ++.++.-.-.++|+.|++++|. ++.+++ +..+++|++|++++| .++.+|.
T Consensus 125 ~~~~---~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 125 SDIN---GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp CCCG---GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCBCGG
T ss_pred CCCh---hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCc-cccchh---hcCCCccCEEECCCC-cCCCChh
Confidence 4443 45666677777777654 4444322223667777777664 555543 666677777777776 5666654
Q ss_pred CCCCCCcCeEEccCCcc
Q 000983 1110 DGLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1110 ~~l~~sL~~L~i~~c~~ 1126 (1199)
..-.++|+.|++++|+.
T Consensus 196 l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GTTCTTCSEEEEEEEEE
T ss_pred hccCCCCCEEECcCCcc
Confidence 33446677777776653
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=9.3e-13 Score=142.28 Aligned_cols=168 Identities=25% Similarity=0.221 Sum_probs=111.1
Q ss_pred cCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 589 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
.+..+..++++++.++.++ .+..+.+|++|++++|.++.+| .++.+++|++|++++|. +..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 4556777778888888776 5778888888888888888887 68888888888888887 455555 888888888888
Q ss_pred ccccccccccCCCCcCCccccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccccccceeEEEec
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 748 (1199)
++|.+.. +|... . ++|++|++.++.
T Consensus 93 ~~N~l~~---l~~~~-~-~~L~~L~L~~N~-------------------------------------------------- 117 (263)
T 1xeu_A 93 NRNRLKN---LNGIP-S-ACLSRLFLDNNE-------------------------------------------------- 117 (263)
T ss_dssp CSSCCSC---CTTCC-C-SSCCEEECCSSC--------------------------------------------------
T ss_pred CCCccCC---cCccc-c-CcccEEEccCCc--------------------------------------------------
Confidence 8885543 33222 2 555555554321
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCCcCeEE
Q 000983 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLN 828 (1199)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~ 828 (1199)
... +..+..+++|+.|++++|....+| .+ ..+++|+.|++++|.+.....+..+++|+.|+
T Consensus 118 -l~~---------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l--~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 118 -LRD---------------TDSLIHLKNLEILSIRNNKLKSIV-ML--GFLSKLEVLDLHGNEITNTGGLTRLKKVNWID 178 (263)
T ss_dssp -CSB---------------SGGGTTCTTCCEEECTTSCCCBCG-GG--GGCTTCCEEECTTSCCCBCTTSTTCCCCCEEE
T ss_pred -cCC---------------ChhhcCcccccEEECCCCcCCCCh-HH--ccCCCCCEEECCCCcCcchHHhccCCCCCEEe
Confidence 100 012334456666666655555554 23 45677777777777666555667777777777
Q ss_pred ecCCCC
Q 000983 829 IKGMLE 834 (1199)
Q Consensus 829 L~~~~~ 834 (1199)
+++|..
T Consensus 179 l~~N~~ 184 (263)
T 1xeu_A 179 LTGQKC 184 (263)
T ss_dssp EEEEEE
T ss_pred CCCCcc
Confidence 777643
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=1.8e-12 Score=135.85 Aligned_cols=148 Identities=22% Similarity=0.209 Sum_probs=115.6
Q ss_pred EEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCccc-CcccccCccccEEe
Q 000983 542 HVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLD 620 (1199)
Q Consensus 542 ~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~ 620 (1199)
.+....+.+..++.. -.+.++.|.+. .+.+..+++..|..+++|++|+|++|.+..+ |..|.++++|++|+
T Consensus 15 ~v~c~~~~l~~iP~~---l~~~l~~L~l~-----~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN---LPETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp EEECTTSCCSSCCSS---CCTTCCEEECC-----SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred EEEcCCCCcCcCCCc---cCcCCCEEECC-----CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 344444445554432 12578888887 4555666666788999999999999999866 77899999999999
Q ss_pred ccCCCccccchh-hcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCC-CcCCccccCccCeEEec
Q 000983 621 LSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 621 L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 698 (1199)
|++|.|+.+|.. |.++++|++|+|++|.+....|..+..+++|++|+|++|.+. .+|. .+..+++|++|++.++.
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ---TIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC---EECHHHHhCCCCCCEEEeCCCC
Confidence 999999998875 688999999999999866666788999999999999999664 4443 57889999999887764
Q ss_pred cc
Q 000983 699 SK 700 (1199)
Q Consensus 699 ~~ 700 (1199)
..
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=2.1e-12 Score=134.49 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=56.8
Q ss_pred ceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcc-cccCcccc
Q 000983 539 ETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDS-VEELKLLR 617 (1199)
Q Consensus 539 ~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr 617 (1199)
.++++.+..+.+..+....+..+++|+.|.+. .+.+..+++..|..+++|++|+|++|.++.+|.. +.++++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-----GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECC-----CCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 44455555444444433334444445554444 2223333333344445555555555544444332 34445555
Q ss_pred EEeccCCCccccchh-hcccCcccEEecCCCCcccccchhhccccccceeecccc
Q 000983 618 YLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1199)
Q Consensus 618 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 671 (1199)
+|+|++|.++.+|.. +.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 555555544444332 444455555555544422222222444445555555444
No 116
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=3.3e-11 Score=139.25 Aligned_cols=295 Identities=13% Similarity=0.084 Sum_probs=174.6
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccccc---ceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF---ESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~ 247 (1199)
..++||+.+++.+.+++.... .......+.|+|++|+||||||+++++. ....+ ...+|+.+....+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 679999999999999887421 0123557889999999999999999983 33332 2456777777777778888
Q ss_pred HHHHhcccCCCC-CCcHHHHHHHHHHHhC--CCeEEEEEecCCCcC----ccChHHHHHhhhC-CCCCcEEEEecCCchh
Q 000983 248 GMIEFHSKMEQS-TSSISLLETRLLEFLT--GQRFLLVLDDVWNED----YRKWEPLQQLLKQ-GHKGSRVLVTSRTARV 319 (1199)
Q Consensus 248 ~i~~~~~~~~~~-~~~~~~l~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~~v 319 (1199)
.++..++..... ..+...+...+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 888777543322 2334555555555554 458999999996422 1223344444432 2345667888876543
Q ss_pred hhhhc-----C--CCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcC---CChHHH-HHHHHhhc
Q 000983 320 SQIMG-----I--RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCK---GLPLAV-KAIAGFLR 388 (1199)
Q Consensus 320 ~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPLai-~~~~~~l~ 388 (1199)
...+. . ...+.+.+++.++..+++...+..... ...-..++.+.|++.++ |.|..+ .++.....
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-----PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-----SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22211 1 137899999999999999876531110 00112345566777776 999744 33332221
Q ss_pred -----c--CCCHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhccCCC-C-cccCHHHHHHHH--
Q 000983 389 -----K--YDDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPK-S-YAFDKAEMVKFW-- 457 (1199)
Q Consensus 389 -----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~-~-~~i~~~~li~~W-- 457 (1199)
. .-+.+.+..++.... ...+.-++..||++.+..+..++...+ + ..+....+.+..
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~ 317 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLN 317 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHH
Confidence 1 124555655554321 123455677889888887776664222 1 123333333322
Q ss_pred HHccc-cccCCCCCCccHHHHHHHHHHHHHhccCcccc
Q 000983 458 MAEAL-IQSRGGGRQEREEEIGIEYFDELLGRSFFQSS 494 (1199)
Q Consensus 458 ~aeg~-i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 494 (1199)
+++.+ +. ..+ ......+++.|...++++..
T Consensus 318 ~~~~~g~~------~~~-~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 318 ICKKLGVE------AVT-QRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHTCC------CCC-HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHhcCCC------CCC-HHHHHHHHHHHHhCCCEEEE
Confidence 12111 11 111 34567889999999999764
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=2.9e-11 Score=144.09 Aligned_cols=173 Identities=26% Similarity=0.307 Sum_probs=139.1
Q ss_pred cccEEEecCCCCCCCCCC--CCCCCcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCC
Q 000983 928 TLLEMKAINCPKLRGLPQ--IFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISN 1005 (1199)
Q Consensus 928 ~L~~L~l~~c~~L~~l~~--~~~l~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~ 1005 (1199)
+++.|++.++. ++.+|. ..+++.|++++|... .+| ..+++|++|++++|....++. +.. +|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLPPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC
Confidence 78899998864 666664 357899999999855 677 567999999999998666666 554 999999999986
Q ss_pred CCCCCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCC
Q 000983 1006 LDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRG 1085 (1199)
Q Consensus 1006 l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~ 1085 (1199)
.. +|. .+++|+.|++++|. ++.+|. .+++|++|++++|. ++.+|. +.++|+.|++++|. ++.+|.
T Consensus 133 ~~-lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~-L~~lp~--l~~~L~~L~Ls~N~-L~~lp~-- 197 (571)
T 3cvr_A 133 TM-LPE--LPALLEYINADNNQ-LTMLPE-----LPTSLEVLSVRNNQ-LTFLPE--LPESLEALDVSTNL-LESLPA-- 197 (571)
T ss_dssp SC-CCC--CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCC--
T ss_pred CC-CCC--cCccccEEeCCCCc-cCcCCC-----cCCCcCEEECCCCC-CCCcch--hhCCCCEEECcCCC-CCchhh--
Confidence 66 776 78999999999998 676773 57899999999986 777887 55999999999985 778875
Q ss_pred CCCCCCCC-------CceeecCCCCCCCCCCC-CCCCCcCeEEccCCcc
Q 000983 1086 TLKSLNSL-------KDFYIEDCPLLQSFPED-GLPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1086 ~l~~l~sL-------~~L~i~~c~~l~~lp~~-~l~~sL~~L~i~~c~~ 1126 (1199)
+.. +| +.|++++| .|+.+|.. .-.++|+.|++++|+.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred -HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 333 66 99999999 78899874 3358999999999976
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=134.10 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=116.3
Q ss_pred eEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhH-HHHhccCCcccEEecCCCCCcccCc-ccccCccccE
Q 000983 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRAL-DKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRY 618 (1199)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~ 618 (1199)
+.+.+..+.+..++.. -...++.|.+. .+.+..+. ...|..+++|++|+|++|.++.++. .|.++.+|++
T Consensus 14 ~~l~~s~n~l~~iP~~---~~~~~~~L~L~-----~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH---IPQYTAELRLN-----NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCSEEECC-----SSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcccCccC---CCCCCCEEEcC-----CCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 3566666666665532 13456777776 34444442 3457889999999999999997765 7999999999
Q ss_pred EeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEe
Q 000983 619 LDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 619 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
|+|++|.++.+|. .|+++++|++|+|++|.+....|..+..+++|++|+|++|.+.. ..|..+..+++|++|++.++
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC--BCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE--ECHHHhcCCCCCCEEEecCc
Confidence 9999999998865 58999999999999998766668889999999999999997642 23677889999999998876
Q ss_pred cccCc
Q 000983 698 GSKSG 702 (1199)
Q Consensus 698 ~~~~~ 702 (1199)
.....
T Consensus 164 ~l~c~ 168 (220)
T 2v70_A 164 PFNCN 168 (220)
T ss_dssp CEECS
T ss_pred CCcCC
Confidence 54333
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=8.1e-13 Score=150.76 Aligned_cols=250 Identities=12% Similarity=0.081 Sum_probs=154.9
Q ss_pred eccCCCCccccccCCCCccEEecccCCCcccchhhhHH----HHhccCC-cccEEecCCCCCccc-CcccccC-----cc
Q 000983 547 CKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALD----KIFHQLK-YLRLLDLSSSTLTVL-PDSVEEL-----KL 615 (1199)
Q Consensus 547 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~l~~l-p~~i~~l-----~~ 615 (1199)
.+.+...........++|+.|.+. .+.+..... ..|..++ +|++|+|++|.+... +..+..+ .+
T Consensus 7 ~n~~~~~~~~~~~~~~~L~~L~Ls-----~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 7 LHPGSNPVEEFTSIPHGVTSLDLS-----LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp CCTTCCHHHHHHTSCTTCCEEECT-----TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccchHHHHHHHhCCCCceEEEcc-----CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 344444333334455668888887 344444333 6778888 899999999998854 5556654 89
Q ss_pred ccEEeccCCCccccc-hh----hccc-CcccEEecCCCCcccccchhhc----c-ccccceeecccccccccc--cCCCC
Q 000983 616 LRYLDLSRTEIKVLP-NS----ICNL-YNLQTLKLIGCIWIMELPKDLA----N-LVKLRNLELEEMFWFKCS--TLPAG 682 (1199)
Q Consensus 616 Lr~L~L~~~~i~~lp-~~----i~~L-~~L~~L~L~~~~~l~~lp~~i~----~-L~~L~~L~l~~n~~~~~~--~lp~~ 682 (1199)
|++|+|++|.+...+ .. +..+ ++|++|++++|.+....+..+. . .++|++|++++|.+...+ .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988553 33 4444 8999999999985544444443 3 258999999998765321 23333
Q ss_pred cCCcc-ccCccCeEEecccCcCChhhhcCCCCCCCceeeCCccccccccccccccc-cccceeEEEecCCCCCCCCCCCC
Q 000983 683 IGKLT-NLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEK-ESLHKLVFEWSNNRDSSPQSQDV 760 (1199)
Q Consensus 683 i~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~ 760 (1199)
+..++ +|++|+++++. .++.....+. ..+... .+|+.|++++|.....
T Consensus 162 l~~~~~~L~~L~Ls~n~-l~~~~~~~l~----------------------~~l~~~~~~L~~L~Ls~N~i~~~------- 211 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN-LASKNCAELA----------------------KFLASIPASVTSLDLSANLLGLK------- 211 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHH----------------------HHHHTSCTTCCEEECTTSCGGGS-------
T ss_pred HhcCCccccEeeecCCC-CchhhHHHHH----------------------HHHHhCCCCCCEEECCCCCCChh-------
Confidence 44444 78888776542 2221111111 112223 3677777777654311
Q ss_pred ccchHHHhhccCC-CCCCcEEEEeecCCCCCCc-----ccccCccCceeEEEEeCccCcccc---------CcCCcCCcC
Q 000983 761 SGDEERLLEDLQP-HPNLEELQIFNYFGNSLPQ-----WMRDGRLQNLVSLTLKGCTNCRIL---------SLGQLSSLR 825 (1199)
Q Consensus 761 ~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~-----~~~~~~l~~L~~L~L~~~~~~~~~---------~l~~l~~L~ 825 (1199)
....+...+.. .++|+.|++++|.....+. .+ ..+++|+.|+|++|.+.... .+..+++|+
T Consensus 212 --~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~--~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 212 --SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK--DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp --CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT--TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred --HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH--hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 12223334433 3588888888776655443 22 45788999999988732221 566788899
Q ss_pred eEEecCCCCc
Q 000983 826 VLNIKGMLEL 835 (1199)
Q Consensus 826 ~L~L~~~~~~ 835 (1199)
.|++++|...
T Consensus 288 ~LdL~~N~l~ 297 (362)
T 3goz_A 288 LVDKNGKEIH 297 (362)
T ss_dssp EECTTSCBCC
T ss_pred EEecCCCcCC
Confidence 9999988643
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=1.9e-11 Score=127.29 Aligned_cols=97 Identities=29% Similarity=0.317 Sum_probs=67.0
Q ss_pred cEEecCCCCCcccCcccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeeccccc
Q 000983 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMF 672 (1199)
Q Consensus 594 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~ 672 (1199)
+.++++++.++.+|..+ ..+|++|++++|.++.+|. .++++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46777888888888655 3588888888888887765 46888888888888887443333346788888888888875
Q ss_pred ccccccCCCC-cCCccccCccCeE
Q 000983 673 WFKCSTLPAG-IGKLTNLHNLHVF 695 (1199)
Q Consensus 673 ~~~~~~lp~~-i~~l~~L~~L~l~ 695 (1199)
+. .+|.. ++.+++|++|++.
T Consensus 88 l~---~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 88 LQ---SLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp CC---CCCTTTTTTCTTCCEEECC
T ss_pred CC---ccCHhHhcCccCCCEEEcC
Confidence 43 33332 3555555555443
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=1.7e-11 Score=126.25 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=64.6
Q ss_pred CcEEEccccccCCCCCcccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCC-CCCCCCCCccceEEEccCCC
Q 000983 950 QKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDS-FPRWPNLPGLKALYIRDCKD 1028 (1199)
Q Consensus 950 ~~L~l~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~-~~~~~~l~~L~~L~l~~c~~ 1028 (1199)
+.|++++|... .+|....+++|++|++++|. ...+..+..+++|++|++++|.+... .+.+..+++|++|++++|.
T Consensus 47 ~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~- 123 (197)
T 4ezg_A 47 TYITLANINVT-DLTGIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA- 123 (197)
T ss_dssp CEEEEESSCCS-CCTTGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-
T ss_pred cEEeccCCCcc-ChHHHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-
Confidence 44444444322 33333444555555555553 22233455555555555555554432 2234555555555555554
Q ss_pred CCC-CcccccCCCCCCcceEEecCCCCCCcCCCCCccCCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCC
Q 000983 1029 LVS-LSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDC 1101 (1199)
Q Consensus 1029 L~~-l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c 1101 (1199)
++. .+ ..+..+++|++|++++|..++.++.-.-.++|+.|++++|. ++.++ .+..+++|++|++++|
T Consensus 124 i~~~~~--~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 124 HDDSIL--TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CBGGGH--HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC
T ss_pred cCcHhH--HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCc
Confidence 221 12 23445555555555555434444321112444444444443 33332 2444444444444444
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=1.1e-11 Score=130.97 Aligned_cols=145 Identities=23% Similarity=0.324 Sum_probs=111.1
Q ss_pred EEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcc-cccCccccEEec
Q 000983 543 VSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDS-VEELKLLRYLDL 621 (1199)
Q Consensus 543 lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L 621 (1199)
+....+.+..++.. -.++|+.|.+. .+.+..+.+..|..+++|++|+|++|.+..+|.. |..+++|++|+|
T Consensus 24 v~c~~~~l~~ip~~---~~~~L~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 24 VDCRSKRHASVPAG---IPTNAQILYLH-----DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EECTTSCCSSCCSC---CCTTCSEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eEccCCCcCccCCC---CCCCCCEEEcC-----CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 33334444444422 23778888887 4555566667788899999999999999888754 688999999999
Q ss_pred cCCCccccchh-hcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCC-CCcCCccccCccCeEEecc
Q 000983 622 SRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLP-AGIGKLTNLHNLHVFRVGS 699 (1199)
Q Consensus 622 ~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~ 699 (1199)
++|.|+.+|.. |..+++|++|++++|. +..+|..+..+++|++|++++|.+. .+| ..+..+++|+.|++.++..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK---SIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCC---ccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999988664 6889999999999987 5588989999999999999998664 444 4578888999988876543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=8.9e-12 Score=154.62 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=99.2
Q ss_pred CCceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccc
Q 000983 537 SPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLL 616 (1199)
Q Consensus 537 ~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L 616 (1199)
.+.++++++..+.+..... ......+|+.+.+.......+.+ ..++..|..++.|++|+|++|.+..+|..+.++.+|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~-~~l~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQ-ALLQHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchh-hHhhcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 3457778877666555332 12233445554443222222222 256778999999999999999999999999999999
Q ss_pred cEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEE
Q 000983 617 RYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 617 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
++|+|++|.|+.+|..|++|++|++|+|++|.+ ..+|..|+.|++|++|+|++|.+ ..+|..+++|++|++|++.+
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l---~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMV---TTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCSSCC---CCCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCCCCC---CccChhhhcCCCccEEeCCC
Confidence 999999999999999999999999999999984 58999999999999999999965 57899999999999999987
Q ss_pred e
Q 000983 697 V 697 (1199)
Q Consensus 697 ~ 697 (1199)
+
T Consensus 326 N 326 (727)
T 4b8c_D 326 N 326 (727)
T ss_dssp S
T ss_pred C
Confidence 5
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=1.2e-10 Score=122.85 Aligned_cols=127 Identities=25% Similarity=0.349 Sum_probs=61.2
Q ss_pred CCCCEEeecCCCCCCCCCC-CCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCc--cCCcce
Q 000983 993 SSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL--PTSLKC 1069 (1199)
Q Consensus 993 ~sL~~L~L~~n~~l~~~~~-~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~ 1069 (1199)
++|++|++++|.+....|. +..+++|++|+|++|. ++.++. ..+.++++|++|++++|. ++.++...+ .++|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence 4444444444444433332 3444455555555544 333332 234445555555555542 334433222 145555
Q ss_pred EEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCCC--CCCCcCeEEccCCcc
Q 000983 1070 LIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDG--LPENLQHLVIQNCPL 1126 (1199)
Q Consensus 1070 L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~--l~~sL~~L~i~~c~~ 1126 (1199)
|++++|. ++.+|. .+..+++|++|++++| .++.+|... ..++|+.|++.+||.
T Consensus 117 L~Ls~N~-l~~lp~--~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 117 LFMCCNK-LTELPR--GIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSC-CCSCCT--TGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EeccCCc-ccccCc--ccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 5555543 445554 4555666666666665 455555431 225666666666553
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=1.5e-11 Score=128.90 Aligned_cols=134 Identities=21% Similarity=0.220 Sum_probs=116.6
Q ss_pred CCCceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcc-cccCc
Q 000983 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDS-VEELK 614 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~ 614 (1199)
.++.++.+.+..+.+..+....+..+++|+.|.+. .+.+..+.+..|..+++|++|+|++|.++.+|.. |.++.
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-----~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-----NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-----SSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-----CCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 44678999999999888777778899999999997 5566666677899999999999999999998876 68899
Q ss_pred cccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchhhccccccceeeccccccc
Q 000983 615 LLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWF 674 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~ 674 (1199)
+|++|+|++|.|+.+ |..|.++++|++|+|++|.+....+..+..+++|++|++++|.+.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999999999987 568999999999999999865555556899999999999999764
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=128.51 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=115.6
Q ss_pred CCCceeEEEEEeccCCCCc-cccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCc-ccccC
Q 000983 536 CSPETRHVSLLCKHVEKPA-LSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEEL 613 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l 613 (1199)
.+..++++.+..+.+..+. ...+..+++|+.|.+. .+.+..+.+..|..+++|++|+|++|.++.+|. .|.++
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-----~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-----NNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-----CCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 3456789999999887763 3457889999999997 455666667789999999999999999997765 48999
Q ss_pred ccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchhhccccccceeeccccccc
Q 000983 614 KLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWF 674 (1199)
Q Consensus 614 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~ 674 (1199)
++|++|+|++|.|..+ |..|.++++|++|+|++|.+.+..|..+..+++|++|++++|.+.
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999999987 678999999999999999976666889999999999999999764
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=2.5e-11 Score=138.08 Aligned_cols=98 Identities=24% Similarity=0.271 Sum_probs=63.0
Q ss_pred cEEecCCCCCcccCcccccCccccEEeccCCCccccchh-hc-ccCcccEEecCCCCcccccchhhccccccceeecccc
Q 000983 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNS-IC-NLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1199)
Q Consensus 594 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n 671 (1199)
++++++++.++.+|..+. ..+++|+|++|.|+.+|.. +. ++++|++|+|++|.+....|..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 467777777777776554 3567777777777766553 44 7777777777777644444456777777777777777
Q ss_pred cccccccCC-CCcCCccccCccCeEE
Q 000983 672 FWFKCSTLP-AGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 672 ~~~~~~~lp-~~i~~l~~L~~L~l~~ 696 (1199)
.+. .+| ..+..+++|+.|++++
T Consensus 99 ~l~---~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 99 HLH---TLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp CCC---EECTTTTTTCTTCCEEECCS
T ss_pred cCC---cCCHHHhCCCcCCCEEECCC
Confidence 543 233 2355666666665544
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.4e-11 Score=123.28 Aligned_cols=107 Identities=24% Similarity=0.256 Sum_probs=75.0
Q ss_pred HhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccc-cchhhcccCcccEEecCCCCcccccc--hhhccccc
Q 000983 586 IFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKV-LPNSICNLYNLQTLKLIGCIWIMELP--KDLANLVK 662 (1199)
Q Consensus 586 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~ 662 (1199)
.+..+++|++|+|++|.+..+ ..++.+++|++|+|++|.+.. +|..+.++++|++|++++|. +..+| ..+..+++
T Consensus 44 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 44 LTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLEC 121 (168)
T ss_dssp CCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSC
T ss_pred HHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCC
Confidence 356677777777777777766 667777777777777777776 66666677777777777776 44444 56777777
Q ss_pred cceeecccccccccccCCC----CcCCccccCccCeEEe
Q 000983 663 LRNLELEEMFWFKCSTLPA----GIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 663 L~~L~l~~n~~~~~~~lp~----~i~~l~~L~~L~l~~~ 697 (1199)
|++|++++|.+ ..+|. .+..+++|++|++.++
T Consensus 122 L~~L~l~~N~l---~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 122 LKSLDLFNCEV---TNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCEEECCSSGG---GTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCEEEeeCCcC---cchHHHHHHHHHhCccCcEecCCCC
Confidence 77777777754 34444 5677777777777665
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.19 E-value=3.2e-10 Score=121.78 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=122.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
..++||+..++.+..++.... ..+++.|+|++|+||||||+++++.......+.. ..+ ..... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~---~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPC---GVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCC---SCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCC---cccHH-HHHHh
Confidence 468999999999999997643 2347889999999999999999874221111100 000 00000 00111
Q ss_pred Hhc-----ccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchh-h
Q 000983 251 EFH-----SKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV-S 320 (1199)
Q Consensus 251 ~~~-----~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~ 320 (1199)
... ..........+.+...+... ..+++.+||+||++..+...++.+...+.....+.++|+||+.... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000 00000011122222222211 2356899999999766556677787777766678889998876432 1
Q ss_pred h-hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 321 Q-IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 321 ~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
. .......+++.+++.++..+++...+...+.. . ..+..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----H---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC----B---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC----C---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 12223578999999999999999887543221 1 13567789999999999988776544
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=8.9e-12 Score=121.82 Aligned_cols=104 Identities=24% Similarity=0.230 Sum_probs=64.1
Q ss_pred HhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccc-cchhhcccCcccEEecCCCCccccc--chhhccccc
Q 000983 586 IFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKV-LPNSICNLYNLQTLKLIGCIWIMEL--PKDLANLVK 662 (1199)
Q Consensus 586 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~ 662 (1199)
.+..+++|++|++++|.+..+ ..++.+++|++|+|++|.+.. +|..++++++|++|++++|.+ ..+ |..+..+++
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i-~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI-KDLSTIEPLKKLEN 114 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC-CSHHHHGGGGGCTT
T ss_pred HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC-CChHHHHHHhhCCC
Confidence 345566666777766666655 556666667777777766665 566666666777777766663 333 256666666
Q ss_pred cceeecccccccccccCCC----CcCCccccCccCe
Q 000983 663 LRNLELEEMFWFKCSTLPA----GIGKLTNLHNLHV 694 (1199)
Q Consensus 663 L~~L~l~~n~~~~~~~lp~----~i~~l~~L~~L~l 694 (1199)
|++|++++|.+. .+|. .++.+++|+.|++
T Consensus 115 L~~L~l~~N~l~---~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 115 LKSLDLFNCEVT---NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTCGGG---GSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEeCcCCccc---chHHHHHHHHHHCCCcccccC
Confidence 777777666443 3333 3555666666654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=2.5e-11 Score=122.31 Aligned_cols=130 Identities=20% Similarity=0.159 Sum_probs=102.5
Q ss_pred ccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhh-ccc
Q 000983 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSI-CNL 636 (1199)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L 636 (1199)
+..+.+|+.|.+. .+.+..+ +......++|++|+|++|.++.+ +.++.+++|++|+|++|.|+.+|..+ +++
T Consensus 15 ~~~~~~L~~L~l~-----~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLR-----GYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECT-----TSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCcCCceEEEee-----CCCCchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 4567778888776 2333332 22223334999999999999988 67999999999999999999988654 999
Q ss_pred CcccEEecCCCCcccccch--hhccccccceeecccccccccccCCCC----cCCccccCccCeEEec
Q 000983 637 YNLQTLKLIGCIWIMELPK--DLANLVKLRNLELEEMFWFKCSTLPAG----IGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 637 ~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~n~~~~~~~lp~~----i~~l~~L~~L~l~~~~ 698 (1199)
++|++|++++|. +..+|. .+..+++|++|++++|.+. .+|.. ++.+++|+.|++..+.
T Consensus 88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~---~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT---NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG---GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC---CcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999999998 577886 7889999999999999664 55664 7889999999988764
No 132
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=7.3e-11 Score=127.36 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=110.8
Q ss_pred CceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCcccc
Q 000983 538 PETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLR 617 (1199)
Q Consensus 538 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 617 (1199)
+.++++.+..+.+..++ .+..+++|+.|.+. .+.+..+.+ |..+++|++|+|++|.++.+|.... .+|+
T Consensus 41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~-----~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLS-----HNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp TTCSEEECTTSCCCCCT--TGGGCTTCCEEECC-----SSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred CcCcEEECcCCCcccch--HHhhCCCCCEEECC-----CCccCCChh--hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 45677777777766654 36778889988887 344444444 7888999999999999888876433 8899
Q ss_pred EEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCcCCccccCccCeEEe
Q 000983 618 YLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 618 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
+|+|++|.++.+| .++++++|++|++++|. +..+| .+..+++|++|++++|.+... ..+..+++|+.|++.++
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEE
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCC
Confidence 9999999888876 58889999999999887 45565 688899999999999876543 56788888999988876
Q ss_pred c
Q 000983 698 G 698 (1199)
Q Consensus 698 ~ 698 (1199)
.
T Consensus 183 ~ 183 (263)
T 1xeu_A 183 K 183 (263)
T ss_dssp E
T ss_pred c
Confidence 4
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=6.4e-13 Score=159.43 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=55.5
Q ss_pred cCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCccccCcCCcCCcCeEEecCCCCcee--cCCCCCccccc
Q 000983 771 LQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEK--WPNDEDCRFLG 848 (1199)
Q Consensus 771 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~L~ 848 (1199)
+..+++|+.|++++|....+|..+ +.+++|+.|+|++|.+.....++.+++|++|+|++|..... +..+..++.|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~--~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGG--GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhh--hcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 334456666666655555666555 44666666666666655544556666666666666644443 22445556666
Q ss_pred ccccCCCCCCCcCCC------cCCCcCeEE
Q 000983 849 RLKISNCPRLNELPE------CMPNLTVMK 872 (1199)
Q Consensus 849 ~L~l~~~~~l~~~~~------~~~~L~~L~ 872 (1199)
.|++++|+.....+. .+|+|+.|+
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 666666654333222 356666653
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=3e-11 Score=118.02 Aligned_cols=109 Identities=19% Similarity=0.167 Sum_probs=94.9
Q ss_pred ccCCcccEEecCCCCCc--ccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccce
Q 000983 588 HQLKYLRLLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1199)
Q Consensus 588 ~~l~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 665 (1199)
...++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.+.+.+|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34688999999999998 8999999999999999999999988 78999999999999999966668988889999999
Q ss_pred eecccccccccccCCCCcCCccccCccCeEEec
Q 000983 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~ 698 (1199)
|++++|.+..+ ..|..++.+++|++|++.++.
T Consensus 93 L~ls~N~i~~~-~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 93 LNLSGNKIKDL-STIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp EECTTSCCCSH-HHHGGGGGCTTCCEEECTTCG
T ss_pred EECCCCcCCCh-HHHHHHhhCCCCCEEeCcCCc
Confidence 99999976432 123678899999999998753
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=6.5e-11 Score=118.34 Aligned_cols=134 Identities=20% Similarity=0.179 Sum_probs=110.5
Q ss_pred CCCceeEEEEEeccCC--CCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcc-cCccccc
Q 000983 536 CSPETRHVSLLCKHVE--KPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTV-LPDSVEE 612 (1199)
Q Consensus 536 ~~~~~r~lsl~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~ 612 (1199)
.++.++++.+..+.+. .++ ..+..+++|+.|.+. .+.+..+ ..|..+++|++|+|++|.+.. +|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~-----~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLI-----NVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEE-----SSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCc-----CCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 4567899999988876 443 336788999999997 3344444 568899999999999999997 7887888
Q ss_pred CccccEEeccCCCccccc--hhhcccCcccEEecCCCCcccccch----hhccccccceeecccccccccccCCC
Q 000983 613 LKLLRYLDLSRTEIKVLP--NSICNLYNLQTLKLIGCIWIMELPK----DLANLVKLRNLELEEMFWFKCSTLPA 681 (1199)
Q Consensus 613 l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~n~~~~~~~lp~ 681 (1199)
+++|++|+|++|.++.+| ..++++++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~---~~~~~ 164 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED---QEAPD 164 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS---CBCCS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh---hhccc
Confidence 999999999999999987 789999999999999998 455565 789999999999999854 44454
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=1.3e-09 Score=114.99 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=117.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEe--cCCCChHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV--TVDYDLPRILKG 248 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~ 248 (1199)
..++|++..++.+..++.... ...+.|+|.+|+|||++|+.+++. .........++.+ +.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHH
Confidence 468999999999999997643 223889999999999999999873 2222212223333 322222222111
Q ss_pred HHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchh-hh-hhcCC
Q 000983 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV-SQ-IMGIR 326 (1199)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~-~~~~~ 326 (1199)
+....... ..-.+++.+||+||++......++.+...+.....+.++|+||+.... .. .....
T Consensus 89 ~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IKEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 11110000 001367899999999766555566777777666677889999876532 11 11223
Q ss_pred CceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHh
Q 000983 327 SPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGF 386 (1199)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 386 (1199)
..+++.+++.++..+++...+...+.. --.+..+.|++.++|.|..+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK-------ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC-------BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478999999999999998877532211 11356678889999999865554443
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=4.9e-11 Score=121.98 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=53.7
Q ss_pred cccEEecCCCCCcccCcc--cccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 592 YLRLLDLSSSTLTVLPDS--VEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 592 ~Lr~L~L~~~~l~~lp~~--i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
.|++|+|++|.+..+|.. |+.+++|++|+|++|.|+.+ |..|+++++|++|+|++|.+.+..|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555544432 55555555555555555544 445555555555555555544433444555555555555
Q ss_pred ccccccccccCCCCcCCccccCccCeEE
Q 000983 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1199)
++|.+.. ..|..++.+++|++|++.+
T Consensus 110 ~~N~l~~--~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 110 YDNQISC--VMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CSSCCCE--ECTTSSTTCTTCCEEECTT
T ss_pred CCCcCCe--eCHHHhhcCCCCCEEEeCC
Confidence 5554431 2344455555555555544
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=6.9e-11 Score=134.49 Aligned_cols=146 Identities=21% Similarity=0.227 Sum_probs=109.0
Q ss_pred eEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhc-cCCcccEEecCCCCCcccC-cccccCccccE
Q 000983 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFH-QLKYLRLLDLSSSTLTVLP-DSVEELKLLRY 618 (1199)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~ 618 (1199)
+.+....+.+..++.. -.+.++.|.+. .+.+..+.+..|. .+++|++|+|++|.|..++ ..|.++++|++
T Consensus 21 ~~l~c~~~~l~~iP~~---~~~~l~~L~Ls-----~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS---LPSYTALLDLS-----HNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCCSS---CCTTCSEEECC-----SSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCccCcc---CCCCCCEEECC-----CCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 3455555556655432 23457778776 4556666666676 8899999999999998776 45889999999
Q ss_pred EeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeecccccccccccCCCCc----CCccccCccC
Q 000983 619 LDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGI----GKLTNLHNLH 693 (1199)
Q Consensus 619 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i----~~l~~L~~L~ 693 (1199)
|+|++|.|+.+|. .|.++++|++|+|++|.+....|..|..+++|++|+|++|.+ ..+|..+ ..+++|+.|+
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI---SRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---CSCCGGGTC----CTTCCEEE
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC---CeeCHHHhcCcccCCcCCEEE
Confidence 9999999988865 588999999999999886666677888999999999999865 4456554 5688888888
Q ss_pred eEEe
Q 000983 694 VFRV 697 (1199)
Q Consensus 694 l~~~ 697 (1199)
+.++
T Consensus 170 L~~N 173 (361)
T 2xot_A 170 LSSN 173 (361)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8764
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=6.8e-12 Score=155.69 Aligned_cols=112 Identities=22% Similarity=0.317 Sum_probs=90.6
Q ss_pred ccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcc
Q 000983 556 SVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICN 635 (1199)
Q Consensus 556 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 635 (1199)
..+..++.|+.|.+. .+.+..++... ..+++|++|+|++|.|+.+|..|++|++|++|+|++|.|+.+|..|++
T Consensus 218 ~~~~~l~~L~~L~Ls-----~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 218 DSKYDDQLWHALDLS-----NLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ----CCCCCCEEECT-----TSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhhccCCCCcEEECC-----CCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 446678888888887 33344333333 378999999999999999999899999999999999999999999999
Q ss_pred cCcccEEecCCCCcccccchhhccccccceeeccccccc
Q 000983 636 LYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWF 674 (1199)
Q Consensus 636 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~ 674 (1199)
|++|++|+|++|. +..+|..|++|++|++|+|++|.+.
T Consensus 292 l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 9999999999987 5688988999999999999998764
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=1e-10 Score=119.61 Aligned_cols=126 Identities=22% Similarity=0.301 Sum_probs=102.8
Q ss_pred eEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHH-HhccCCcccEEecCCCCCccc-CcccccCccccE
Q 000983 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDK-IFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRY 618 (1199)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~ 618 (1199)
+.+.+..+.+..++... ...++.|.+. .+.+..+.+. .|..+++|++|+|++|.++.+ |..|.++.+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~-----~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLN-----DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECC-----SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECC-----CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 45666666666655322 2378888887 3444444442 588999999999999999966 778999999999
Q ss_pred EeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeeccccccc
Q 000983 619 LDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWF 674 (1199)
Q Consensus 619 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~ 674 (1199)
|+|++|.|+.+|. .|.++++|++|+|++|.+.+..|..+..+++|++|++++|.+.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999998865 5999999999999999977788999999999999999999764
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=2e-10 Score=117.31 Aligned_cols=105 Identities=27% Similarity=0.298 Sum_probs=76.4
Q ss_pred CcccEEecCCCCCcccCcccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeecc
Q 000983 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (1199)
++|++|+|++|.++.+|..|.++.+|++|+|++|.|+.++. .|.++++|++|+|++|.+....|..|..+++|++|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 46777888888888777778888888888888888877753 57788888888888877555455567778888888888
Q ss_pred cccccccccCCC-CcCCccccCccCeEEec
Q 000983 670 EMFWFKCSTLPA-GIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 670 ~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 698 (1199)
+|.+. .+|. .+..+++|+.|++.++.
T Consensus 111 ~N~l~---~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDIS---VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCC---BCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCC---eeChhhhhcCccccEEEeCCCC
Confidence 87553 4454 36677777777776654
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=2.1e-10 Score=137.56 Aligned_cols=86 Identities=27% Similarity=0.292 Sum_probs=54.6
Q ss_pred hccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCccccc-chhhccccccce
Q 000983 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMEL-PKDLANLVKLRN 665 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~ 665 (1199)
|..+++|++|+|++|.++.+|..|+++++|++|+|++|.|+.+| .+++|++|++|+|++|.+.+.. |..+..+++|++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 55566666666666666666666666666666666666666666 5666666666666666533333 666666666666
Q ss_pred eecccccc
Q 000983 666 LELEEMFW 673 (1199)
Q Consensus 666 L~l~~n~~ 673 (1199)
|++++|.+
T Consensus 538 L~L~~N~l 545 (567)
T 1dce_A 538 LNLQGNSL 545 (567)
T ss_dssp EECTTSGG
T ss_pred EEecCCcC
Confidence 66666644
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=8.2e-10 Score=112.69 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=87.2
Q ss_pred cEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccceeecccccc
Q 000983 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFW 673 (1199)
Q Consensus 594 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~ 673 (1199)
++++++++.++.+|..+. .+|++|+|++|.|+.+|..|.++++|++|++++|.+....|..|..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 689999999999998765 689999999999999999999999999999999996665566799999999999999976
Q ss_pred cccccCCCCcCCccccCccCeEEe
Q 000983 674 FKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 674 ~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
..+ .|..++.+++|++|++.++
T Consensus 91 ~~i--~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 91 RCI--PPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CBC--CTTTTTTCTTCCEEECCSS
T ss_pred CEe--CHHHhCCCCCCCEEECCCC
Confidence 532 2346899999999998774
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=3.3e-10 Score=114.06 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=106.2
Q ss_pred CCceeEEEEEeccCCCCccccccCC-CCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCccc-ccCc
Q 000983 537 SPETRHVSLLCKHVEKPALSVVENS-KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSV-EELK 614 (1199)
Q Consensus 537 ~~~~r~lsl~~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~l~ 614 (1199)
....+++.+..+.+..++. +... ++|+.|.+. .+.+..+ ..|..+++|++|+|++|.++.+|..+ +.++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls-----~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFS-----DNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECC-----SSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCceEEEeeCCCCchhHH--hhhcCCCCCEEECC-----CCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 4567889998888876532 4444 499999997 3444444 46889999999999999999988665 8999
Q ss_pred cccEEeccCCCccccch--hhcccCcccEEecCCCCcccccchh----hccccccceeecccccc
Q 000983 615 LLRYLDLSRTEIKVLPN--SICNLYNLQTLKLIGCIWIMELPKD----LANLVKLRNLELEEMFW 673 (1199)
Q Consensus 615 ~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~n~~ 673 (1199)
+|++|+|++|.|..+|. .++++++|++|++++|. +..+|.. +..+++|++|++++|..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999999999987 89999999999999998 5577775 89999999999999854
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.97 E-value=6.6e-09 Score=116.35 Aligned_cols=268 Identities=16% Similarity=0.117 Sum_probs=148.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
..++|++..++.+..++..... .......+.|+|++|+|||++|+++++. .... .+++..+......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChH-------
Confidence 4689999998888877753110 0012346789999999999999999873 2222 2333332221111
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC------------------CCcEEEE
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH------------------KGSRVLV 312 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 312 (1199)
.+...+...+ .+..+|++||+..........+...+.... .+.++|.
T Consensus 79 --------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 79 --------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1112121111 345689999997654444455555554321 2356776
Q ss_pred ecCCch-hhhhh-cC-CCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhhcc
Q 000983 313 TSRTAR-VSQIM-GI-RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRK 389 (1199)
Q Consensus 313 TtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~ 389 (1199)
||.... +...+ .. ...+.+.+++.++..+++...+...+.. --.+..+.|++.++|.|-.+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-------ITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-------CCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 666432 21111 11 2478999999999999998877543221 11356778999999999887776654421
Q ss_pred ------C--CCHHHHHHHHhhhccccccCCCCCCCcccchhhcccCCChhhHHHHHHhc-cCCCC----------cccCH
Q 000983 390 ------Y--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCS-IFPKS----------YAFDK 450 (1199)
Q Consensus 390 ------~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~----------~~i~~ 450 (1199)
. -+.+....++.. +...+..++...+..+..+. .|..+ ..+++
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~------------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~ 278 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAA------------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDP 278 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHH------------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCH
T ss_pred HHHHhcCCCCCHHHHHHHHHH------------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCH
Confidence 1 123334443332 11223455655555554433 33222 11334
Q ss_pred HHHHH----HHHHccccccCCCCCCccHHHHHHHHHH-HHHhccCccc
Q 000983 451 AEMVK----FWMAEALIQSRGGGRQEREEEIGIEYFD-ELLGRSFFQS 493 (1199)
Q Consensus 451 ~~li~----~W~aeg~i~~~~~~~~~~~~~~~~~~~~-~L~~~sll~~ 493 (1199)
..+.+ +-+..|++.....+... .+.|.+||. ++.+|+|||+
T Consensus 279 ~tl~~~l~~~~i~~~li~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 279 GTLEEVHEPYLIRQGLLKRTPRGRVP--TELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHHTHHHHHHTTSEEEETTEEEE--CHHHHHHTTCCCCC------
T ss_pred HHHHHHHhHHHHHhcchhcCCcccee--cHHHHHHHhcCCCCCCCCCC
Confidence 33333 34567888755544444 788999997 8999999985
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=1e-09 Score=110.63 Aligned_cols=104 Identities=26% Similarity=0.349 Sum_probs=52.2
Q ss_pred CcccEEecCCCCCcccCcc-cccCccccEEeccCCCccccchh-hcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVLPDS-VEELKLLRYLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
++|++|++++|.++.+|.. ++.+++|++|+|++|.++.+|.. ++++++|++|++++|.+....|..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3455555555555544432 45555555555555555555432 455555555555555533222223455555555555
Q ss_pred ccccccccccCCCC-cCCccccCccCeEEe
Q 000983 669 EEMFWFKCSTLPAG-IGKLTNLHNLHVFRV 697 (1199)
Q Consensus 669 ~~n~~~~~~~lp~~-i~~l~~L~~L~l~~~ 697 (1199)
++|.+. .+|.. +..+++|++|++.++
T Consensus 108 ~~N~l~---~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 108 DTNQLK---SVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CSSCCS---CCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcce---EeCHHHhcCCcccCEEEecCC
Confidence 555432 33333 344555555555443
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=1.8e-09 Score=107.71 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=73.2
Q ss_pred ccEEecCCCCCcccCcccccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccch-hhccccccceeeccc
Q 000983 593 LRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEE 670 (1199)
Q Consensus 593 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 670 (1199)
.++|+++++.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|.+. .+|. .+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCC
Confidence 4678888888888887664 7788888888888877 556888888888888888744 4444 457888888888888
Q ss_pred ccccccccCCC-CcCCccccCccCeEEec
Q 000983 671 MFWFKCSTLPA-GIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 671 n~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 698 (1199)
|.+ ..+|. .++.+++|++|++.++.
T Consensus 88 N~l---~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQL---KSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCC---CCCCTTTTTTCTTCCEEECCSSC
T ss_pred Ccc---CEeCHHHhcCCCCCCEEEeCCCC
Confidence 855 34554 37778888888777653
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.3e-08 Score=114.01 Aligned_cols=186 Identities=13% Similarity=0.172 Sum_probs=116.0
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1199)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+. ..+++..+....... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 568999999999999997643 22388999999999999999997321 11111 123333332222211 1111
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHh-CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch-hhhh-hcCC
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI-MGIR 326 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~ 326 (1199)
++.+.... ..+ .+++.+||+||++......++.+...+.....++++|+||+... +... ....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 11111000 011 45689999999976555556667777766567788888887542 2111 2233
Q ss_pred CceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHH-HHHHHH
Q 000983 327 SPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLA-VKAIAG 385 (1199)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~ 385 (1199)
..+++.+++.++..+++...+...+.. --.+....|++.++|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK-------YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC-------BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478999999999999998876432211 1135667899999999954 444443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=2.2e-09 Score=107.39 Aligned_cols=98 Identities=22% Similarity=0.397 Sum_probs=53.3
Q ss_pred cEEecCCCCCcccCcccccCccccEEeccCCCcccc-chhhcccCcccEEecCCCCcccccchh-hccccccceeecccc
Q 000983 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLELEEM 671 (1199)
Q Consensus 594 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~n 671 (1199)
+.++++++.+..+|..+. .+|++|+|++|.|..+ |..|+++++|++|+|++|. +..+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 455666666665555443 5566666666666555 3455566666666666655 3334433 355666666666665
Q ss_pred cccccccCCCC-cCCccccCccCeEEe
Q 000983 672 FWFKCSTLPAG-IGKLTNLHNLHVFRV 697 (1199)
Q Consensus 672 ~~~~~~~lp~~-i~~l~~L~~L~l~~~ 697 (1199)
.+ ..+|.. ++.+++|++|++.++
T Consensus 92 ~l---~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HL---KSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CC---CCCCTTTTTTCTTCSEEECCSS
T ss_pred cc---ceeCHHHhccccCCCEEEeCCC
Confidence 43 233433 555566666555543
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=2.5e-11 Score=124.97 Aligned_cols=109 Identities=24% Similarity=0.248 Sum_probs=81.4
Q ss_pred HhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchhhccccccce
Q 000983 586 IFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1199)
Q Consensus 586 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 665 (1199)
.|..+++|++|+|++|.+..+| .+.++++|++|++++|.+..+|..+..+++|++|++++|. +..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 5677888888888888888777 7888888888888888888888777778888888888876 44466 6778888888
Q ss_pred eecccccccccccCCCCcCCccccCccCeEEec
Q 000983 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG 698 (1199)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~ 698 (1199)
|++++|.+..+..+ ..+..+++|++|++.++.
T Consensus 120 L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 120 LYMSNNKITNWGEI-DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEESEEECCCHHHH-HHHTTTTTCSEEEECSCH
T ss_pred EECCCCcCCchhHH-HHHhcCCCCCEEEecCCc
Confidence 88888765432111 256777888888776653
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.84 E-value=4.4e-09 Score=105.95 Aligned_cols=125 Identities=21% Similarity=0.283 Sum_probs=98.1
Q ss_pred eEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcc-cccCccccEE
Q 000983 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDS-VEELKLLRYL 619 (1199)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L 619 (1199)
+.+....+.+..++. .-.++++.|.+. .+.+..+++..|..+++|++|+|++|.++.+|.. ++.+.+|++|
T Consensus 10 ~~l~~~~~~l~~~p~---~~~~~l~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT---GIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSSCCSSCCT---TCCTTCSEEECC-----SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCCccCCC---CCCCCCcEEEeC-----CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 345555555555542 223688999887 3445556666788999999999999999988765 6899999999
Q ss_pred eccCCCccccchh-hcccCcccEEecCCCCcccccchh-hccccccceeeccccccc
Q 000983 620 DLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLELEEMFWF 674 (1199)
Q Consensus 620 ~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~n~~~ 674 (1199)
+|++|.++.+|.. ++++++|++|++++|.+ ..+|.. +..+++|++|++++|.+.
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCee
Confidence 9999999988764 78999999999999984 456655 578999999999999654
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=1.4e-10 Score=119.43 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=58.1
Q ss_pred ccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCcccccCccccEEeccCCCccccchhhcccC
Q 000983 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1199)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1199)
+..+++|+.|.+. .+.+..++ .+..+++|++|+|++|.+..+|..+..+++|++|+|++|.+..+| .+++++
T Consensus 44 ~~~l~~L~~L~ls-----~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 44 LSTLKACKHLALS-----TNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp HHHTTTCSEEECS-----EEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred HhcCCCCCEEECC-----CCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 4455556665554 23333322 445556666666666665555555555556666666666665555 455566
Q ss_pred cccEEecCCCCcccccch--hhccccccceeecccccc
Q 000983 638 NLQTLKLIGCIWIMELPK--DLANLVKLRNLELEEMFW 673 (1199)
Q Consensus 638 ~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~n~~ 673 (1199)
+|++|++++|. +..+|. .+..+++|++|++++|.+
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 66666666555 333332 455566666666665544
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=1.2e-08 Score=114.20 Aligned_cols=244 Identities=12% Similarity=0.114 Sum_probs=129.5
Q ss_pred CCcccEEecCCCCCcccCcccccCccccEEeccCCCccccch-hhcc--------cCcccEEecCCCCcccccc-hhhcc
Q 000983 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICN--------LYNLQTLKLIGCIWIMELP-KDLAN 659 (1199)
Q Consensus 590 l~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~--------L~~L~~L~L~~~~~l~~lp-~~i~~ 659 (1199)
+++|++|||++|.+......-+.+..++++.+..+ .+|. .|.+ +++|+.|+|.. . +..++ ..|..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhc
Confidence 88899999999998822111122333555555555 3433 4566 78888888876 4 44444 35777
Q ss_pred ccccceeecccccccccccCCCCcCCccccCccCeEEec---ccCcCChhhhcCCCCCCCceeeCCcccccccccccccc
Q 000983 660 LVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG---SKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSE 736 (1199)
Q Consensus 660 L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~ 736 (1199)
|++|+.|++.+|.+..+. +..+..+.++..+...... .........+..+..+...+.+.............-..
T Consensus 123 ~~~L~~l~l~~n~i~~i~--~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLL--PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp CTTCCEEEBCCSSCCEEC--TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred CcccceEEcCCCCccccc--hhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 888888888777543322 1334444444444322100 00000011122222332222222222221111111122
Q ss_pred ccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc
Q 000983 737 KESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL 816 (1199)
Q Consensus 737 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~ 816 (1199)
..++..+.+...... .....+. ..+++|+.|++.++....+|...+ ..+.+|+.|+|.++ .....
T Consensus 201 ~~~~~~l~~~~~l~~-----------~~~~~l~--~~~~~L~~l~L~~n~i~~I~~~aF-~~~~~L~~l~l~~n-i~~I~ 265 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-----------ADFKLIR--DYMPNLVSLDISKTNATTIPDFTF-AQKKYLLKIKLPHN-LKTIG 265 (329)
T ss_dssp GGGCSEEEEEECCCH-----------HHHHHHH--HHCTTCCEEECTTBCCCEECTTTT-TTCTTCCEEECCTT-CCEEC
T ss_pred ccccceEEEeeeecH-----------HHHHHHH--HhcCCCeEEECCCCCcceecHhhh-hCCCCCCEEECCcc-cceeh
Confidence 345555555543110 1111111 125788888888777777777654 56888888888876 33333
Q ss_pred --CcCCcCCcC-eEEecCCCCceecC--CCCCcccccccccCCCCC
Q 000983 817 --SLGQLSSLR-VLNIKGMLELEKWP--NDEDCRFLGRLKISNCPR 857 (1199)
Q Consensus 817 --~l~~l~~L~-~L~L~~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 857 (1199)
.|.++++|+ .+.+.+ .+..++ .+.++..|+.+++.++..
T Consensus 266 ~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 266 QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCcc
Confidence 678888888 888877 344443 567777888887766543
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=5.2e-09 Score=104.60 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=71.8
Q ss_pred CcccEEecCCCCCccc-CcccccCccccEEeccCCCccccchh-hcccCcccEEecCCCCcccccchh-hccccccceee
Q 000983 591 KYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLE 667 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 667 (1199)
++|++|+|++|.++.+ |..|+++++|++|+|++|.|+.+|.. |.++++|++|+|++|. +..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 6789999999999977 56789999999999999999999875 6899999999999998 4456654 88999999999
Q ss_pred ccccccc
Q 000983 668 LEEMFWF 674 (1199)
Q Consensus 668 l~~n~~~ 674 (1199)
|++|.+.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 9999663
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=1.6e-08 Score=113.32 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=52.6
Q ss_pred CCCCCEEeecCCCCCCCCCC--CCCCCccceEEEccCCCCCCCcccccCCCCCCcc-eEEecCCCCCCcCCCCCcc--CC
Q 000983 992 TSSLNFLILSKISNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLN-LLSIRGCPKLETLPDEGLP--TS 1066 (1199)
Q Consensus 992 l~sL~~L~L~~n~~l~~~~~--~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~-~L~l~~c~~l~~l~~~~~~--~s 1066 (1199)
+++|+.|+|++|.+. .+|. |.++++|+.|++.++ ++.++. ..|.++++|+ .|++.+ .++.++...|. ++
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n--i~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN--LKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT--CCEECT-TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc--cceehH-HHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence 456666666666533 3332 455666666666654 555554 4566666666 666655 35555444333 45
Q ss_pred cceEEeccCCCCcccCCCCCCCCCCCCCcee
Q 000983 1067 LKCLIIASCSGLKSLGPRGTLKSLNSLKDFY 1097 (1199)
Q Consensus 1067 L~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~ 1097 (1199)
|+.|++.++. ++.++. ..|.++++|+.++
T Consensus 299 L~~l~l~~n~-i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 299 LRYVLATGDK-ITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEEECSSC-CCEECT-TTTCTTCCCCEEE
T ss_pred CCEEEeCCCc-cCccch-hhhcCCcchhhhc
Confidence 5555554432 445544 3455555555543
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=6.3e-09 Score=103.68 Aligned_cols=84 Identities=26% Similarity=0.293 Sum_probs=70.7
Q ss_pred CcccEEecCCCCCccc-CcccccCccccEEeccCCCccccchh-hcccCcccEEecCCCCcccccchhhccccccceeec
Q 000983 591 KYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1199)
Q Consensus 591 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 668 (1199)
+.|++|+|++|.|+.+ |..|.++.+|++|+|++|+|+.+|.. |.++++|++|+|++|.+....|..+..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6789999999999977 56789999999999999999988764 689999999999999844433445889999999999
Q ss_pred cccccc
Q 000983 669 EEMFWF 674 (1199)
Q Consensus 669 ~~n~~~ 674 (1199)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 998663
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=7.8e-08 Score=107.84 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++. +........++.+... +...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~-~~~~------ 89 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNAS-DERG------ 89 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETT-CHHH------
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeecc-ccCc------
Confidence 458999999999999987643 334889999999999999999973 2111111112222211 1100
Q ss_pred HhcccCCCCCCcHHHHHHHHHHH-----h-CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchh-hhh-
Q 000983 251 EFHSKMEQSTSSISLLETRLLEF-----L-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV-SQI- 322 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~-----l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~- 322 (1199)
.+.+...+.+. + .+++.++|+||++......++.+...+.....++++|+||....- ...
T Consensus 90 ------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 157 (327)
T 1iqp_A 90 ------------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 157 (327)
T ss_dssp ------------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred ------------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHH
Confidence 00001111111 1 267889999999776555667777777666677889988876431 111
Q ss_pred hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 323 MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 323 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
......+.+.+++.++..+++...+...+. .--.+..+.|++.++|.|..+..+...+
T Consensus 158 ~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-------~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 158 QSRCAIFRFRPLRDEDIAKRLRYIAENEGL-------ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHTEEEEECCCCCHHHHHHHHHHHHHTTTC-------EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhCcEEEecCCCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 112247889999999999999887754322 1113566788999999998765554433
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.63 E-value=4.4e-07 Score=98.31 Aligned_cols=212 Identities=11% Similarity=0.022 Sum_probs=128.3
Q ss_pred CCccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc------ccceeEEEEecCCCChH
Q 000983 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE------HFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~~~~~~~~~ 243 (1199)
...+.||+++.+++...|...- .......+.|+|++|+|||++|++|++...... .| ..+.|.+....+..
T Consensus 19 ~~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~ 95 (318)
T 3te6_A 19 RELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--H
T ss_pred ccccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHH
Confidence 3448899999999987776432 123466788999999999999999998432111 12 34566666777888
Q ss_pred HHHHHHHHhcccCCCC-CCcHHHHHHHHHHH--hCCCeEEEEEecCCCcCccChHHHHHhhhCC-CCCc--EEEEecCCc
Q 000983 244 RILKGMIEFHSKMEQS-TSSISLLETRLLEF--LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGS--RVLVTSRTA 317 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~--l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs--~iivTtR~~ 317 (1199)
.++..|++++...... ....+.+...+... -+++++++|||+++.-. .-+.+...+.+. ..++ -||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCc
Confidence 8999999988654322 23334444444332 24678999999996543 334455444311 1222 333344332
Q ss_pred hh---------hhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCC--------------------------C------cc
Q 000983 318 RV---------SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNF--------------------------S------SR 356 (1199)
Q Consensus 318 ~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~--------------------------~------~~ 356 (1199)
+. ...++ ...+.+.+++.+|-.+++..++-..... . ..
T Consensus 174 d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (318)
T 3te6_A 174 VTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHK 252 (318)
T ss_dssp CCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEE
T ss_pred ccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 21 11221 1468899999999999998876432110 0 00
Q ss_pred ccchhHHHHHHHHHHhcCCChHHHHHHHHhh
Q 000983 357 MQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1199)
Q Consensus 357 ~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 387 (1199)
..+..++-+|++++...|-.-.|+.++-.+.
T Consensus 253 i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 253 INNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp CCHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 1234456666667777777777777776554
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=4.3e-08 Score=110.94 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=54.1
Q ss_pred EecCCC-CCcccCcccccCccccEEeccC-CCccccc-hhhcccCcccEEecCCCCcccccchhhccccccceeeccccc
Q 000983 596 LDLSSS-TLTVLPDSVEELKLLRYLDLSR-TEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMF 672 (1199)
Q Consensus 596 L~L~~~-~l~~lp~~i~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~ 672 (1199)
++++++ .++.+|. |..+.+|++|+|++ |.|..+| ..|++|++|++|+|++|.+.+..|..|.+|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 355555 5666666 66666666666664 6666554 346666666666666665444444455666666666666664
Q ss_pred ccccccCCCCcCCccccCccCeEEe
Q 000983 673 WFKCSTLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 673 ~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1199)
+ ..+|..+.....|+.|++.++
T Consensus 92 l---~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 L---ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp C---SCCCSTTTCSCCCCEEECCSS
T ss_pred c---ceeCHHHcccCCceEEEeeCC
Confidence 3 334443322223555555543
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.56 E-value=8.4e-07 Score=101.39 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|++..++.+..++.... ....+.|+|++|+||||+|+.+++.......+.. ..+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHh
Confidence 358999999999999987543 2347789999999999999999874221111100 000000 0011111
Q ss_pred Hh-------cccCC-CCCCcHHHHHHHHHHH-hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch-hh
Q 000983 251 EF-------HSKME-QSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VS 320 (1199)
Q Consensus 251 ~~-------~~~~~-~~~~~~~~l~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 320 (1199)
.. +.... ........+...+... ..+++.+||+||++..+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 00000 0112222222222111 135678999999976655566777777776666777777776432 21
Q ss_pred h-hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHH
Q 000983 321 Q-IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1199)
Q Consensus 321 ~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 385 (1199)
. .......+++.+++.++..+++...+...+.. -..+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-------~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-------HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-------BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1 12233578999999999999998766332211 1135567899999999987766543
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=1.4e-06 Score=99.53 Aligned_cols=119 Identities=14% Similarity=0.208 Sum_probs=71.5
Q ss_pred CCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccCc-ccccCccccEEeccCCCccccc-hhhcccCc
Q 000983 561 SKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLP-NSICNLYN 638 (1199)
Q Consensus 561 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~ 638 (1199)
+..+..+.+. +.+..+...+|.++ +|+.++|..+ ++.++. .|.+ .+|+.+.+.. .++.++ ..|.+|.+
T Consensus 112 ~~~l~~i~ip------~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILP------NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp CSSCSEEECC------TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTT
T ss_pred cCCccEEEEC------CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCccc
Confidence 4556666655 22333445556664 5777777654 655543 3555 3577777775 566664 36777888
Q ss_pred ccEEecCCCCcccccchhhccccccceeecccccccccccCC-CCcCCccccCccCe
Q 000983 639 LQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLP-AGIGKLTNLHNLHV 694 (1199)
Q Consensus 639 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp-~~i~~l~~L~~L~l 694 (1199)
|+.+++.+|. +..+|.......+|+.+.+..+ + ..++ ..+..+++|+.+.+
T Consensus 182 L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l---~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 182 LKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-L---KEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-C---CEECTTTTTTCTTCCCEEC
T ss_pred CCeeecCCCc-ceEechhhEeecccCEEEeCCc-h---heehhhHhhCCCCCCEEec
Confidence 8888887665 5556655444677777777643 2 2232 34556666666654
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.47 E-value=1.1e-06 Score=97.80 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=112.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1199)
.+++|++..++.+..++.... ...+.++|++|+|||++|+.+++... ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 458999999999988886533 22378999999999999999987311 11111 1122333221110
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHH--h-CCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch-hhhh-hc
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEF--L-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI-MG 324 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~--l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~ 324 (1199)
.........+... + .+++.++|+||++.......+.+...+.....+.++|+||.... +... ..
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 0111111111111 1 25688999999976544445556666655556778888876543 2111 12
Q ss_pred CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHH
Q 000983 325 IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1199)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 385 (1199)
....+++.+++.++..+++...+...+.. --.+....|++.++|.+-.+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-------i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK-------ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC-------BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23478999999999999998877543221 1135567888999999976554443
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.43 E-value=1.9e-07 Score=105.58 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=76.2
Q ss_pred chhhhHHHHhccCCcccEEecCC-CCCcccC-cccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCcccccc
Q 000983 578 DFGRALDKIFHQLKYLRLLDLSS-STLTVLP-DSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELP 654 (1199)
Q Consensus 578 ~~~~~~~~~~~~l~~Lr~L~L~~-~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp 654 (1199)
.+..++. +..+++|++|+|++ |.+..+| ..|++|.+|++|+|++|.|+.+|. .|++|++|++|+|++|. +..+|
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLS 96 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCC
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeC
Confidence 3444444 78889999999996 9999877 569999999999999999998755 78999999999999998 45666
Q ss_pred hhhccccccceeeccccccc
Q 000983 655 KDLANLVKLRNLELEEMFWF 674 (1199)
Q Consensus 655 ~~i~~L~~L~~L~l~~n~~~ 674 (1199)
..+....+|++|+|.+|.+.
T Consensus 97 ~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp STTTCSCCCCEEECCSSCCC
T ss_pred HHHcccCCceEEEeeCCCcc
Confidence 65544444999999998664
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=2.2e-06 Score=97.90 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=138.7
Q ss_pred CCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCccccEEeccCCCccc
Q 000983 550 VEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKV 628 (1199)
Q Consensus 550 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~ 628 (1199)
+..+....|.++ +|+.+.+. +.+..+...+|.++ .|+.+.|.+ .+..++ ..|.++.+|+.++|++|.++.
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~------~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~ 194 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLN------EGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK 194 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECC------TTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE
T ss_pred cCEehHhhcccC-CccEEEeC------CCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE
Confidence 444455566665 68888876 22444555677775 699999986 666665 568899999999999999999
Q ss_pred cchhhcccCcccEEecCCCCccccc-chhhccccccceeecccccccccccCCCC-cCCccccCccCeEEecccCcCChh
Q 000983 629 LPNSICNLYNLQTLKLIGCIWIMEL-PKDLANLVKLRNLELEEMFWFKCSTLPAG-IGKLTNLHNLHVFRVGSKSGYRIE 706 (1199)
Q Consensus 629 lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~n~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~ 706 (1199)
+|...-...+|+.+.+..+ +..+ ...|.++++|+.+++..+ +..++.. +.. .+|+.+.+. +.
T Consensus 195 I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~----l~~I~~~aF~~-~~L~~i~lp--~~------- 258 (401)
T 4fdw_A 195 LPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN----VSTIGQEAFRE-SGITTVKLP--NG------- 258 (401)
T ss_dssp ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT----CCEECTTTTTT-CCCSEEEEE--TT-------
T ss_pred echhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC----ccCcccccccc-CCccEEEeC--CC-------
Confidence 9875444789999999854 4444 446788999999998764 2333332 333 556655542 11
Q ss_pred hhcCCCCCCCceeeCCccccccccccccccccccceeEEEecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeecC
Q 000983 707 ELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYF 786 (1199)
Q Consensus 707 ~l~~l~~L~~~L~l~~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 786 (1199)
+.......+.++.+|+.+.+..+....... ..--...+..+++|+.+.+.+.
T Consensus 259 -------------------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~--------~~I~~~aF~~c~~L~~l~l~~~- 310 (401)
T 4fdw_A 259 -------------------VTNIASRAFYYCPELAEVTTYGSTFNDDPE--------AMIHPYCLEGCPKLARFEIPES- 310 (401)
T ss_dssp -------------------CCEECTTTTTTCTTCCEEEEESSCCCCCTT--------CEECTTTTTTCTTCCEECCCTT-
T ss_pred -------------------ccEEChhHhhCCCCCCEEEeCCccccCCcc--------cEECHHHhhCCccCCeEEeCCc-
Confidence 111223345556666666665543220000 0000134556677777777643
Q ss_pred CCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCC
Q 000983 787 GNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGML 833 (1199)
Q Consensus 787 ~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~ 833 (1199)
...++...+ ..+.+|+.+.|..+ ..... .|..+ +|+.+.+.++.
T Consensus 311 i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 311 IRILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCEECTTTT-TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred eEEEhhhhh-cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 344444332 45677788887554 22222 56667 78888887764
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.39 E-value=5.9e-07 Score=95.59 Aligned_cols=175 Identities=16% Similarity=0.144 Sum_probs=101.1
Q ss_pred Cccccc---hhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGR---DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
++++|. +..++.+..+.... ..+.+.|+|++|+||||||+.+++. .......+.|+.+......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 356663 24455555555432 2457889999999999999999973 3322334566665432110
Q ss_pred HHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccC--hHHHHHhhhCC-CCC-cEEEEecCCch-----
Q 000983 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK--WEPLQQLLKQG-HKG-SRVLVTSRTAR----- 318 (1199)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~~----- 318 (1199)
+. +.+ +.+ .+..+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~~-------------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----ST-------------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----CG-------------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----HH-------------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 000 011 345689999997543322 33444443221 122 25777776422
Q ss_pred ----hhhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHH
Q 000983 319 ----VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1199)
Q Consensus 319 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 385 (1199)
+...+.....+++.+++.++..+++...+...+.. --.+....|++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-------LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-------CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 12222223578999999999999998877532211 1145667888999999876655443
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.35 E-value=1.2e-06 Score=89.47 Aligned_cols=45 Identities=31% Similarity=0.502 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..++||+.+++++.+++.... ...+.|+|.+|+|||++|+++++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999986533 445789999999999999999873
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=5.6e-06 Score=95.62 Aligned_cols=181 Identities=18% Similarity=0.108 Sum_probs=106.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccce--eEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFES--RMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
...+.|+|.+|+||||||+++++ .....|.. .++++.. .+..++...+... ... .+.+.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CHH----HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cHH----HHHHHhc
Confidence 55788999999999999999998 34333322 2344332 2333444333221 111 2333334
Q ss_pred CCeEEEEEecCCCcCc--cChHHHHHhhhC-CCCCcEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHHH
Q 000983 276 GQRFLLVLDDVWNEDY--RKWEPLQQLLKQ-GHKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIF 343 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1199)
.+.-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3667999999965432 122344444422 23567888888752 23333444467899999999999999
Q ss_pred HHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHHHhh------ccC-CCHHHHHHHHhh
Q 000983 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL------RKY-DDVNKWRKILSS 402 (1199)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l------~~~-~~~~~w~~~l~~ 402 (1199)
.+.+...+.. .+ .++...|++.++|.+-.+.-+...+ ..+ -+.+.++.++..
T Consensus 273 ~~~~~~~~~~----i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHGE----LP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTCC----CC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCCC----CC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8877432210 11 2456678899999986544332221 122 356677777764
No 168
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.32 E-value=2.2e-05 Score=88.03 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|++..++.+..++..... .......|.|+|++|+|||++|+++++. ....| +.+......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~---------- 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIE---------- 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCC----------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhcc----------
Confidence 5689999999999888864210 0122445789999999999999999873 33222 222222111
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC------------------CCcEEEE
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH------------------KGSRVLV 312 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 312 (1199)
....+...+.. ..+..+|+||++..........+...+.... ++..+|.
T Consensus 93 -----------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 93 -----------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -----------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -----------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 11122222221 2456789999997655444555666554322 1245666
Q ss_pred ecCCch-hhhh-h-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 313 TSRTAR-VSQI-M-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 313 TtR~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
||.... +... . .....+.+.+++.++..+++...+..... .--.+..+.|++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-------~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-------TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-------EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 1111 1 12357899999999999999887754321 1124566788889999995554443
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=5.8e-06 Score=93.56 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=113.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1199)
.+++|++..++.+..++.... ...+.|+|++|+||||+|+.+++.......+. ..+.+..+....... +++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 568999999999999986543 22378999999999999999997421111121 122233332222222 2222
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch-hhhh-hcCCC
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI-MGIRS 327 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~ 327 (1199)
+.............. .....-.+++-+|++|++..........+...+.......++|++|.... +... .....
T Consensus 110 ~~~~~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHHhhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 211111000000000 00011124567999999976554555667776765556677777775432 2111 11124
Q ss_pred ceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 328 PYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
.+.+.+++.++..+.+...+...+.. --.+..+.|++.++|.|-.+..+.
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~-------i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVK-------CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC-------CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78899999999999998876433211 114567889999999997655443
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.26 E-value=1.5e-05 Score=91.63 Aligned_cols=183 Identities=15% Similarity=0.161 Sum_probs=104.5
Q ss_pred CccccchhhH---HHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDK---ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
+++||.+..+ ..+...+.... ...+.|+|.+|+||||+|+.+++. .... ++.++.......-.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHH
Confidence 4678888777 66777776544 467889999999999999999983 3222 233332221111122
Q ss_pred HHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE-ecCCch--h-hhhh
Q 000983 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTAR--V-SQIM 323 (1199)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~--v-~~~~ 323 (1199)
.++... ......+++.+|++|+++.......+.+...+..+ ...+|. ||.+.. + ....
T Consensus 93 ~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 222111 11112467889999999876555566677666642 233443 555432 2 1222
Q ss_pred cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
.....+.+++++.++..+++.+.+.............--.+..+.|++.++|.+-.+..+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 3335788999999999999988765421100000111224566778888999886555443
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=4e-05 Score=87.88 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=53.0
Q ss_pred CCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCcc--C
Q 000983 988 AIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--T 1065 (1199)
Q Consensus 988 ~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~ 1065 (1199)
.+..+.+|+.+....+.+.. ..+..+.+|+.+.+.++ ++.++. ..|.++++|+.++|.+. ++.+....+. +
T Consensus 271 ~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~-~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGE-EAFESCTSLVSIDLPYL--VEEIGKRSFRGCT 343 (394)
T ss_dssp TTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECT-TTTTTCTTCCEECCCTT--CCEECTTTTTTCT
T ss_pred ccccccccceeccCceeecc--ccccccccccccccccc--cceech-hhhcCCCCCCEEEeCCc--ccEEhHHhccCCC
Confidence 34444555555544332110 11344555666655432 444443 45666666666666432 5555544443 5
Q ss_pred CcceEEeccCCCCcccCCCCCCCCCCCCCceeecC
Q 000983 1066 SLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIED 1100 (1199)
Q Consensus 1066 sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~ 1100 (1199)
+|+.+.+..+ ++.++. ..|.+|++|+++++..
T Consensus 344 ~L~~i~lp~~--l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 344 SLSNINFPLS--LRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTT--CCEECT-TTBTTCTTCCEEEEEG
T ss_pred CCCEEEECcc--ccEehH-HHhhCCCCCCEEEECC
Confidence 6666666432 555554 3566777777776654
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.21 E-value=2.9e-05 Score=83.50 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=98.7
Q ss_pred CccccchhhHHHHHHHHh---CCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLL---SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.+..++.+.+++. .... ......+-+.|+|++|+|||++|+++++. ....| +.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVPF---LAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCCE---EEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEechHHHHh---
Confidence 467899888777755542 2110 00123445779999999999999999973 22222 2333332111
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc------------CccChH---HHHHhhhC--CCCC
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE------------DYRKWE---PLQQLLKQ--GHKG 307 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~------------~~~~~~---~l~~~l~~--~~~g 307 (1199)
.........+...+.........+|++||++.. +..... .+...+.. ...+
T Consensus 78 ------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 ------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000111222333333333456789999999643 111112 22322322 2235
Q ss_pred cEEEEecCCchhh-hh-h---cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH-HHH
Q 000983 308 SRVLVTSRTARVS-QI-M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVK 381 (1199)
Q Consensus 308 s~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~ 381 (1199)
..||.||...... .. . .....+.+...+.++..+++...+...... .........+++.+.|.+- .|.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~------~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT------QSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC------BTHHHHHHHHHHTCTTCCHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC------cchhhHHHHHHHHCCCCCHHHHH
Confidence 5677777654321 11 1 123467789999999999998877543221 1112234678888888754 444
Q ss_pred HH
Q 000983 382 AI 383 (1199)
Q Consensus 382 ~~ 383 (1199)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=6.2e-06 Score=90.00 Aligned_cols=184 Identities=17% Similarity=0.129 Sum_probs=100.8
Q ss_pred CccccchhhHHHHHHHHhCCCCC-------CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFD-------EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
.+++|.+..++++.+.+...... ......-+.|+|++|+|||+||+++++. ....| +.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHH--
Confidence 56899999999998776431000 0022446889999999999999999973 22222 2222221110
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc-----------CccChHHHHHhhh-----CCCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-----------DYRKWEPLQQLLK-----QGHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~-----~~~~g 307 (1199)
. ........+...+......+..+|+|||++.. +......+...+. ....+
T Consensus 90 ------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 ------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp ------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred ------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 0 00111122233333333456789999999532 1111123333332 22346
Q ss_pred cEEEEecCCchhhh-h-h---cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCC-ChHHHH
Q 000983 308 SRVLVTSRTARVSQ-I-M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG-LPLAVK 381 (1199)
Q Consensus 308 s~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~ 381 (1199)
..||.||....... . . .....+.+...+.++..++|...+...... .... ...+++.+.| .|-.|.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA----EDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC----TTCC----HHHHHHHCTTCCHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC----CcCC----HHHHHHHcCCCCHHHHH
Confidence 67888887543221 1 1 122368899999999999998887543221 1111 3466777766 453444
Q ss_pred H
Q 000983 382 A 382 (1199)
Q Consensus 382 ~ 382 (1199)
.
T Consensus 229 ~ 229 (285)
T 3h4m_A 229 A 229 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.16 E-value=3.2e-05 Score=87.87 Aligned_cols=197 Identities=12% Similarity=0.070 Sum_probs=105.0
Q ss_pred CccccchhhHHH---HHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEec----CCCChH
Q 000983 171 ANVFGRDDDKER---ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT----VDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~ 243 (1199)
+.+||++..++. +...+.... ...+.+.|+|++|+|||++|+++++. ...... .+.+... ......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchh
Confidence 579999988766 455555433 22357889999999999999999984 222111 1112211 122333
Q ss_pred HHHHHHHHhcccC-----------------------------CC-CCCcHHHHHHHHHHHh-----CCC----eEEEEEe
Q 000983 244 RILKGMIEFHSKM-----------------------------EQ-STSSISLLETRLLEFL-----TGQ----RFLLVLD 284 (1199)
Q Consensus 244 ~~~~~i~~~~~~~-----------------------------~~-~~~~~~~l~~~l~~~l-----~~k----~~LlVlD 284 (1199)
+.+.+........ .. .......+...+.+.. .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3333333221100 00 0001222222222211 233 3499999
Q ss_pred cCCCcCccChHHHHHhhhCCCCCcEEEEecC-C-----------c-hh-hhhhcCCCceeCCCCChhHHHHHHHHHhcCC
Q 000983 285 DVWNEDYRKWEPLQQLLKQGHKGSRVLVTSR-T-----------A-RV-SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1199)
Q Consensus 285 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~-----------~-~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1199)
++...+......+...+...... .++++|. . . .+ .........+.+.+++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99766555556666666543333 3444442 1 0 11 1111222357899999999999998877543
Q ss_pred CCCCccccchhHHHHHHHHHHhcC-CChHHHHH
Q 000983 351 GNFSSRMQQQNLEAIGREIVGKCK-GLPLAVKA 382 (1199)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~i~~~c~-glPLai~~ 382 (1199)
+.. --.+....|++.+. |.|-.+..
T Consensus 276 ~~~-------~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 276 DVE-------MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TCC-------BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCC-------CCHHHHHHHHHHhcCCCHHHHHH
Confidence 221 11356677888887 77754443
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.9e-05 Score=93.47 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhCCC------C-----CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC
Q 000983 171 ANVFGRDDDKERILHMLLSDE------F-----DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~------~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1199)
.+++|++..++++..++.... . ......+.+.|+|++|+||||+|+++++.. . + ..+.+.++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCCc
Confidence 568999999999999987510 0 001134688999999999999999999832 1 2 1233444443
Q ss_pred CChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccC---hHHHHHhhhCCCCCcEEEEecCC
Q 000983 240 YDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK---WEPLQQLLKQGHKGSRVLVTSRT 316 (1199)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~---~~~l~~~l~~~~~gs~iivTtR~ 316 (1199)
... .+....+...........-...... .....+++.+||+|+++.....+ +..+...+... +..||+++..
T Consensus 114 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chH-HHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 332 2333322222111100000000000 00123678899999996543222 24555555432 3345555543
Q ss_pred ch---hhhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh-HHHHHHH
Q 000983 317 AR---VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIA 384 (1199)
Q Consensus 317 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 384 (1199)
.. +.........+.+.+++.++..+.+...+...+.. .. .+....|++.++|.+ -|+..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~----i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK----LD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----CC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC----CC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 22 22222233468899999999999988776533211 11 234668889999954 5555543
No 176
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=1.7e-07 Score=106.02 Aligned_cols=131 Identities=17% Similarity=0.114 Sum_probs=77.3
Q ss_pred CCccEEecccCCCcccchhhh-HHHHhccCCcccEEecCCCCCccc-----Cccc-ccCccccEEeccCCCccc-----c
Q 000983 562 KKLRTFLVPSFGEHLKDFGRA-LDKIFHQLKYLRLLDLSSSTLTVL-----PDSV-EELKLLRYLDLSRTEIKV-----L 629 (1199)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~l~~l-----p~~i-~~l~~Lr~L~L~~~~i~~-----l 629 (1199)
+.|+.|.+. .+.+... .......+++|+.|+|++|.+... ...+ ....+|++|+|++|.|.. +
T Consensus 101 ~~L~~L~Ls-----~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLA-----SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECT-----TCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred CCceEEEec-----CCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence 577777776 2223221 222334456777888887777522 1222 235677888888877753 4
Q ss_pred chhhcccCcccEEecCCCCccc----ccchhhccccccceeecccccccccc--cCCCCcCCccccCccCeEEe
Q 000983 630 PNSICNLYNLQTLKLIGCIWIM----ELPKDLANLVKLRNLELEEMFWFKCS--TLPAGIGKLTNLHNLHVFRV 697 (1199)
Q Consensus 630 p~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~n~~~~~~--~lp~~i~~l~~L~~L~l~~~ 697 (1199)
+..+..+++|++|||++|.+.. .++..+...++|++|+|++|.+...+ .++..+...++|++|++++|
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 5556677778888888776432 23455666777888888777654321 23333445567777777654
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.1e-05 Score=91.10 Aligned_cols=197 Identities=10% Similarity=0.069 Sum_probs=106.7
Q ss_pred CccccchhhHHHHHHHH-hCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc--cc--ccceeE-------------
Q 000983 171 ANVFGRDDDKERILHML-LSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV--RE--HFESRM------------- 232 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~--~F~~~~------------- 232 (1199)
.+++|.+..++.+..++ .... ... +.|+|+.|+||||+|+.++....- .+ .++...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46889998888888877 4322 233 889999999999999998862100 00 000000
Q ss_pred -----EEEecCC-C--ChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC
Q 000983 233 -----WVCVTVD-Y--DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG 304 (1199)
Q Consensus 233 -----wv~~~~~-~--~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (1199)
++.+... . ......+++++.+....... ... .+ ..+.+++-++|+|++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111100 0 00001122222211100000 000 00 001336679999999776555566677777655
Q ss_pred CCCcEEEEecCCc-hhhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHH
Q 000983 305 HKGSRVLVTSRTA-RVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1199)
Q Consensus 305 ~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 382 (1199)
..+..+|++|... .+... ......+++.+++.++..+.+...+...+.. .. ..+....|++.++|.+-.+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~--~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ----LE--TKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE----EC--CSHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC----CC--cHHHHHHHHHHcCCCHHHHHH
Confidence 5677788777653 23222 2233578999999999999998876432210 01 024567888999998865554
Q ss_pred HHH
Q 000983 383 IAG 385 (1199)
Q Consensus 383 ~~~ 385 (1199)
+..
T Consensus 236 ~l~ 238 (354)
T 1sxj_E 236 MLE 238 (354)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 178
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=6.6e-07 Score=87.20 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=52.3
Q ss_pred ccceEEEccCCCCCCCcccccCCCCCCcceEEecCCCCCCcCCCCCc------cCCcceEEeccCCCCcccCCCCCCCCC
Q 000983 1017 GLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL------PTSLKCLIIASCSGLKSLGPRGTLKSL 1090 (1199)
Q Consensus 1017 ~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~------~~sL~~L~l~~c~~L~~lp~~~~l~~l 1090 (1199)
.|+.|++++|. ++.... ..+.++++|++|+|++|..++.-....+ .++|++|+|++|+++++-.- ..+.++
T Consensus 62 ~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred eEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence 56777777766 443322 3456677777777777776554211111 13678888888877776432 124566
Q ss_pred CCCCceeecCCCCCCC
Q 000983 1091 NSLKDFYIEDCPLLQS 1106 (1199)
Q Consensus 1091 ~sL~~L~i~~c~~l~~ 1106 (1199)
++|++|++++|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 7777777777766554
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.06 E-value=3.4e-05 Score=85.18 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=92.1
Q ss_pred ccccchhhHHHHHHHHhCC---------CCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 172 NVFGRDDDKERILHMLLSD---------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
.++|.+..++.+.+++... ..........+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4789988888887665321 0001133456789999999999999988873222222212223444311
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc---------CccChHHHHHhhhCCCCCcEEEEe
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE---------DYRKWEPLQQLLKQGHKGSRVLVT 313 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 313 (1199)
.+... ........+...+... +.-+|++|+++.. .......+...+.....+..||+|
T Consensus 109 ---------~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 01000 0111122233333332 2349999999632 323345666666656667788888
Q ss_pred cCCch----------hhhhhcCCCceeCCCCChhHHHHHHHHHhcC
Q 000983 314 SRTAR----------VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1199)
Q Consensus 314 tR~~~----------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1199)
|.... +...+ ...+.+.+++.++..+++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 86432 22222 257889999999999999887754
No 180
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.05 E-value=1.2e-05 Score=89.58 Aligned_cols=175 Identities=14% Similarity=0.156 Sum_probs=102.5
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
++++|.+..++.+..++.... ...++.+.|++|+|||++|+++++. .. ...+.+..+. .... ..+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CKID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CCHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cCHH-HHHHHH
Confidence 578999999999999997543 3457778888999999999999873 22 1223344322 1221 111111
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC-ccChHHHHHhhhCCCCCcEEEEecCCch-----hhhhhc
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED-YRKWEPLQQLLKQGHKGSRVLVTSRTAR-----VSQIMG 324 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~-----v~~~~~ 324 (1199)
....... ...+++-+||+||++... ....+.+...+.....+.++|+||.... +...
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR-- 156 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR-- 156 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--
Confidence 1110000 012477899999997654 4455566666654445678888887543 2222
Q ss_pred CCCceeCCCCChhHHHHHH-------HHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHH
Q 000983 325 IRSPYLLEYLPEDQCWSIF-------KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1199)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf-------~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 381 (1199)
...+++++++.++-.+++ ...+...+. . ..+ .+....|++.++|.+-.+.
T Consensus 157 -~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~---~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 -CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-A---IAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-C---BSC--HHHHHHHHHHTCSCTTHHH
T ss_pred -CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-C---CCc--HHHHHHHHHhCCCCHHHHH
Confidence 246889999988743332 222221111 0 000 2566778888888765433
No 181
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.04 E-value=0.00016 Score=82.92 Aligned_cols=142 Identities=12% Similarity=0.127 Sum_probs=93.0
Q ss_pred cccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCCCCCCCccceEEEccCCCCCCCcccccCCCCCCcceEEe
Q 000983 970 QRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSI 1049 (1199)
Q Consensus 970 ~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~L~l 1049 (1199)
.+|+.+.+...........+.++.+|+.+.+..+...-....+..+..|+.+...... ++. ..+.++.+|+.+.+
T Consensus 230 ~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~-~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPE-KTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECT-TTTTTCTTCCEEEE
T ss_pred CCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee----ecc-cccccccccccccc
Confidence 5667776655433333445677788888888766332222235667777777765543 333 46788888998888
Q ss_pred cCCCCCCcCCCCCcc--CCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCCCCC--CCCcCeEEccC
Q 000983 1050 RGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGL--PENLQHLVIQN 1123 (1199)
Q Consensus 1050 ~~c~~l~~l~~~~~~--~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~~~l--~~sL~~L~i~~ 1123 (1199)
.++ ++.++...+. ++|+.++|.+ .++.++. ..|.+|++|+.+.+..+ ++.++...+ ..+|+.+++..
T Consensus 305 ~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 305 LDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK-RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT-TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccc--cceechhhhcCCCCCCEEEeCC--cccEEhH-HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 753 6777666554 6888888864 3777765 46888888888888653 677765533 25777777653
No 182
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.01 E-value=0.00011 Score=81.64 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccc--------------------ccceeEEEEe
Q 000983 177 DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE--------------------HFESRMWVCV 236 (1199)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~ 236 (1199)
++..+.+...+..+. -.+.+.++|+.|+||||+|+.+++...-.. +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 445566777776543 345788999999999999999987321110 111 112211
Q ss_pred cCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHH----hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEE
Q 000983 237 TVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV 312 (1199)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 312 (1199)
.. .......+.+.+.+... ..+++-++|+|+++..+....+.+...+.....++.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 00112223332222111 135678999999976655556777777766666777777
Q ss_pred ecCCch-hhhh-hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 313 TSRTAR-VSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 313 TtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
+|.... +... ......+++.+++.++..+.+.... ... .+.+..+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~--------~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TMS--------QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CCC--------HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CCC--------HHHHHHHHHHcCCCHHHHHHHh
Confidence 776542 3222 2333578999999999999888765 111 2455778999999997665443
No 183
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=3.9e-06 Score=88.61 Aligned_cols=88 Identities=25% Similarity=0.234 Sum_probs=64.5
Q ss_pred hhhhHHHHhccCCcccEEecCCCCCccc---CcccccCccccEEeccCCCccccchhhcccC--cccEEecCCCCccccc
Q 000983 579 FGRALDKIFHQLKYLRLLDLSSSTLTVL---PDSVEELKLLRYLDLSRTEIKVLPNSICNLY--NLQTLKLIGCIWIMEL 653 (1199)
Q Consensus 579 ~~~~~~~~~~~l~~Lr~L~L~~~~l~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~l 653 (1199)
+...+.-....+++|+.|+|++|.|..+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+.+.+
T Consensus 158 ~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 158 MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred HHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcccc
Confidence 3334444456788999999999988754 45677899999999999988877 3355555 8999999998866655
Q ss_pred ch-------hhccccccceee
Q 000983 654 PK-------DLANLVKLRNLE 667 (1199)
Q Consensus 654 p~-------~i~~L~~L~~L~ 667 (1199)
|. .+..+++|+.||
T Consensus 237 ~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEES
T ss_pred CcchhHHHHHHHHCcccCeEC
Confidence 52 356777777775
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.99 E-value=0.0001 Score=79.43 Aligned_cols=195 Identities=19% Similarity=0.222 Sum_probs=99.5
Q ss_pred ccccchhhHHHHHH-------HHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 172 NVFGRDDDKERILH-------MLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.++|.....++++. .+.... ......+.|+|.+|+|||++|+++++. ....| +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~---- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKM---- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGC----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHh----
Confidence 46677666555554 333211 234678889999999999999999983 22211 222222111
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc------CccC----hHHHHHhhhC---CCCCcEEE
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE------DYRK----WEPLQQLLKQ---GHKGSRVL 311 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~------~~~~----~~~l~~~l~~---~~~gs~ii 311 (1199)
.+ .........+...+......+..+|++||++.. .... .+.+...+.. ......||
T Consensus 102 --------~g--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 102 --------IG--FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------TT--CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------cC--CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 00 000011122333344444567899999998532 1111 1223333322 22234567
Q ss_pred EecCCchhhhh---hcC-CCceeCCCCCh-hHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCC------ChHHH
Q 000983 312 VTSRTARVSQI---MGI-RSPYLLEYLPE-DQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG------LPLAV 380 (1199)
Q Consensus 312 vTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai 380 (1199)
.||........ .+. ...+++.+++. ++..+++.... .. . .+....|++.+.| .+-++
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~----~----~~~~~~l~~~~~g~~~~g~ir~l~ 239 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF----K----DKERTTIAQQVKGKKVWIGIKKLL 239 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS----C----HHHHHHHHHHHTTSEEEECHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC----C----HHHHHHHHHHhcCCCccccHHHHH
Confidence 77776644332 111 34678888887 66666655431 11 1 2445677888877 44444
Q ss_pred HHHHHhhccCCCHHHHHHHHh
Q 000983 381 KAIAGFLRKYDDVNKWRKILS 401 (1199)
Q Consensus 381 ~~~~~~l~~~~~~~~w~~~l~ 401 (1199)
.++-.... ......+..++.
T Consensus 240 ~~l~~a~~-~~~~~~~~~~~~ 259 (272)
T 1d2n_A 240 MLIEMSLQ-MDPEYRVRKFLA 259 (272)
T ss_dssp HHHHHHTT-SCGGGHHHHHHH
T ss_pred HHHHHHhh-hchHHHHHHHHH
Confidence 44433322 223345555554
No 185
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.99 E-value=2.7e-06 Score=96.19 Aligned_cols=133 Identities=19% Similarity=0.140 Sum_probs=96.8
Q ss_pred CceeEEEEEeccCCCCccc-cccCCCCccEEecccCCCcccchhhh----HHHHh-ccCCcccEEecCCCCCcc-----c
Q 000983 538 PETRHVSLLCKHVEKPALS-VVENSKKLRTFLVPSFGEHLKDFGRA----LDKIF-HQLKYLRLLDLSSSTLTV-----L 606 (1199)
Q Consensus 538 ~~~r~lsl~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~----~~~~~-~~l~~Lr~L~L~~~~l~~-----l 606 (1199)
...+.+.+..+.+...... ....+++|+.|.+. .+.+... +...+ .....|++|+|++|.++. +
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls-----~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQ-----LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECC-----SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcC-----CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence 4677788877766432211 12345678999887 3334332 22333 357899999999999863 5
Q ss_pred CcccccCccccEEeccCCCcc-----ccchhhcccCcccEEecCCCCccc----ccchhhccccccceeecccccccc
Q 000983 607 PDSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCIWIM----ELPKDLANLVKLRNLELEEMFWFK 675 (1199)
Q Consensus 607 p~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L~~L~~L~l~~n~~~~ 675 (1199)
+..+..+++|++|+|++|.|. .++..+...++|++|+|++|.+.. .++..+...++|++|+|++|.+..
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 666788999999999999987 346778889999999999998543 345566678999999999997643
No 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.96 E-value=1.3e-05 Score=81.07 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..++||+.+++.+.+.+.... ...+.|+|.+|+||||+|+++++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996532 445689999999999999999873
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.94 E-value=8.2e-05 Score=82.64 Aligned_cols=155 Identities=17% Similarity=0.081 Sum_probs=86.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
...+.|+|++|+||||||+.+++. ....-...+++++ ..+...+...+... ..... .+.+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG-----TINEF----RNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHHHH----HHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHHHH----HHHhc-C
Confidence 456789999999999999999983 2211112344443 23333333332211 11222 22222 3
Q ss_pred eEEEEEecCCCcCc--cChHHHHHhhhC-CCCCcEEEEecCCc---------hhhhhhcCCCceeCCCCChhHHHHHHHH
Q 000983 278 RFLLVLDDVWNEDY--RKWEPLQQLLKQ-GHKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIFKK 345 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (1199)
.-+|++||+..... ...+.+...+.. ...|.+||+||... .+...+.....+++.+ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999965332 112334444321 12456788887632 2223333445789999 99999999988
Q ss_pred HhcCCCCCCccccchhHHHHHHHHHHhcCCChHH
Q 000983 346 IAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLA 379 (1199)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 379 (1199)
.+...+.. . -.++...|++.+ |..-.
T Consensus 178 ~~~~~~~~----l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNLE----L---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTCC----C---CHHHHHHHHHHC-SSHHH
T ss_pred HHHhcCCC----C---CHHHHHHHHHhC-CCHHH
Confidence 87533221 1 135566788888 76643
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.90 E-value=2e-05 Score=75.56 Aligned_cols=114 Identities=23% Similarity=0.151 Sum_probs=68.5
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
.++|+...+.++.+.+..-. .... -|.|+|.+|+|||++|+.+++.... .... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a---~~~~-~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS---ETDI-AVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT---TCCS-CEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh---CCCC-CEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 47899999998888775422 1122 3579999999999999999973211 1111 23 555433221
Q ss_pred hcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCC
Q 000983 252 FHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1199)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1199)
.. ....+... +.-.|++|+++.........+...+.......+||.||..
T Consensus 66 ---------~~---~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQ---LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SC---HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hh---hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 01 11111111 2246899999776655556677777655556788888774
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.90 E-value=0.00015 Score=80.30 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=104.0
Q ss_pred CCccccchhhHHHHHHHHhCC---C---CCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 170 TANVFGRDDDKERILHMLLSD---E---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
-.+++|.+..++.+.+.+... . .......+-+.++|++|+|||+||+++++. ....| +.++. .
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~-----~~v~~----~ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF-----FSVSS----S 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE-----EEEEH----H
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE-----EEEch----H
Confidence 357899999999998877210 0 001223456889999999999999999983 32222 22221 1
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCcc-------C----hHHHHHhhh---CCCCCcE
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR-------K----WEPLQQLLK---QGHKGSR 309 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~-------~----~~~l~~~l~---~~~~gs~ 309 (1199)
.+ .... .......+...+...-..+..+|+||+++..... . ...+...+. ....+..
T Consensus 86 ~l----~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 86 DL----VSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp HH----HTTT-----GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred HH----hhcc-----cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 11 1100 0111122222333333456789999999642110 0 233333332 2334556
Q ss_pred EEEecCCchhhh-h--hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCC-hHHHHHHH
Q 000983 310 VLVTSRTARVSQ-I--MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAIA 384 (1199)
Q Consensus 310 iivTtR~~~v~~-~--~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 384 (1199)
||.||....... . -.....+.+...+.++-.++|..++....... -......|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-------~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-------TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-------CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-------CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776532211 0 02234677888999999999998875432211 123456788888874 54454444
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.89 E-value=0.00035 Score=77.02 Aligned_cols=189 Identities=17% Similarity=0.129 Sum_probs=102.3
Q ss_pred CccccchhhHHHHHHHHhC----CC-C-CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLS----DE-F-DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~-~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
++++|.+..++.+.+.+.. .. . ......+-|.++|++|+|||+||+++++... ...| +.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHHh---
Confidence 5688999888888776531 00 0 0112346788999999999999999997320 1111 2222221110
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc------cC-----hHHHHHhhhC---CCCCcEE
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY------RK-----WEPLQQLLKQ---GHKGSRV 310 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~------~~-----~~~l~~~l~~---~~~gs~i 310 (1199)
.........+...+...-..++.+|++|+++.... .. ...+...+.. ...+..|
T Consensus 85 ------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 ------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 00112222233333333346788999999964211 01 1122222322 2344556
Q ss_pred EEecCCchhh-hh-h-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCC-hHHHHHHHH
Q 000983 311 LVTSRTARVS-QI-M-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAIAG 385 (1199)
Q Consensus 311 ivTtR~~~v~-~~-~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 385 (1199)
|.||...... .. . .....+.+...+.++..+++..++...... -.......|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-------l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-------LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-------CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6566543221 11 1 233567888889999999998876433211 0134567888999887 444555443
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=0.00014 Score=81.18 Aligned_cols=175 Identities=14% Similarity=0.208 Sum_probs=103.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccce-eEEEEecCCCChHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDYDLPRILKGM 249 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 249 (1199)
..++|.+..++.+..++..+. ...+.++|++|+||||+|+.+++... ...+.. ..-+..+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 457898888888888887543 22378999999999999999987321 111111 11122221111
Q ss_pred HHhcccCCCCCCcHHHHHHHHHHH------hCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch-hhhh
Q 000983 250 IEFHSKMEQSTSSISLLETRLLEF------LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI 322 (1199)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~------l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 322 (1199)
.+.+.+.+... +.+.+-++|+|+++.......+.+...+.......++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 12222222111 123467899999966554555666666655556677777765432 2111
Q ss_pred -hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHH
Q 000983 323 -MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1199)
Q Consensus 323 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 380 (1199)
......+.+.+++.++..+.+...+-..+.. . ..+..+.|++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~----i---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLK----L---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC----B---CHHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCC----C---CHHHHHHHHHHcCCCHHHH
Confidence 1223468899999999888887766322210 1 1345677888888887643
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.86 E-value=0.00017 Score=81.04 Aligned_cols=188 Identities=11% Similarity=0.076 Sum_probs=101.9
Q ss_pred CccccchhhHHHHHHHHhC----CCC-C-CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLS----DEF-D-EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~-~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.+..++.+.+.+.. ... . .....+.|.|+|++|+|||+||+++++. ....| +.+.++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGATF---FSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCEE---EEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCeE---EEEehHHhhcc--
Confidence 4689999999988877642 000 0 0123457889999999999999999973 22222 33333321110
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-----------cChHHHHHhhhCC----CCCcE
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQG----HKGSR 309 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~----~~gs~ 309 (1199)
........+...+...-..++.+|+||+++.... .....+...+... ..+..
T Consensus 157 -------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 -------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 0011111122222222235678999999942110 1122333333321 23445
Q ss_pred EEEecCCch-hhhhh--cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCC-ChHHHHHHHH
Q 000983 310 VLVTSRTAR-VSQIM--GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG-LPLAVKAIAG 385 (1199)
Q Consensus 310 iivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 385 (1199)
||.||.... +...+ .....+.+...+.++..+++...+...... -..+....|++.+.| .+-.|..+..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-------l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-------LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-------CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-------ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665432 21111 122467788889999999988776433211 113456778888888 4555555443
No 193
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=4e-06 Score=84.40 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=46.4
Q ss_pred hhHHHHhccCCcccEEecCCC-CCc-----ccCcccccCccccEEeccCCCcc-----ccchhhcccCcccEEecCCCCc
Q 000983 581 RALDKIFHQLKYLRLLDLSSS-TLT-----VLPDSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCIW 649 (1199)
Q Consensus 581 ~~~~~~~~~l~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~ 649 (1199)
..+...+...+.|++|+|++| .+. .+...+....+|++|+|++|.|. .+...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 334445555555566666555 543 23334444555556666655554 2333444455556666655553
Q ss_pred ccc----cchhhccccccceeec--ccccc
Q 000983 650 IME----LPKDLANLVKLRNLEL--EEMFW 673 (1199)
Q Consensus 650 l~~----lp~~i~~L~~L~~L~l--~~n~~ 673 (1199)
... +...+...+.|++|+| ++|.+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 221 3334444555555655 44543
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=5e-06 Score=80.96 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=50.2
Q ss_pred ccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCCCCC--CCCC----CCccceEEEccCCCCCCCcccccCCCCCC
Q 000983 971 RLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLDSFP--RWPN----LPGLKALYIRDCKDLVSLSGEGALQSLTS 1043 (1199)
Q Consensus 971 ~L~~L~l~~~~-~~~~~~~l~~l~sL~~L~L~~n~~l~~~~--~~~~----l~~L~~L~l~~c~~L~~l~~~~~l~~l~~ 1043 (1199)
+|++|++++|. .......+.++++|+.|+|++|..+++-. .+.. .++|++|+|++|.++++-.. ..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 56677777766 22334455667777777777776544211 1222 23677777777776665433 24455666
Q ss_pred cceEEecCCCCCCc
Q 000983 1044 LNLLSIRGCPKLET 1057 (1199)
Q Consensus 1044 L~~L~l~~c~~l~~ 1057 (1199)
|++|+|++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 66666666665543
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.81 E-value=0.00036 Score=78.09 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=100.6
Q ss_pred CccccchhhHHHHHHHHhCC----CC--CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSD----EF--DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.+..++.+...+... .. ......+-|.|+|++|+|||+||+++++. ....| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46899999999888776311 00 01122345779999999999999999983 32222 122221 1
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCcc-----------ChHHHHHhhhC---CCCCcEE
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR-----------KWEPLQQLLKQ---GHKGSRV 310 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~-----------~~~~l~~~l~~---~~~gs~i 310 (1199)
+. ... .......+...+...-..++.+|+||+++..... ....+...+.. ...+..|
T Consensus 120 l~----~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV----SKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh----hhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 110 0111222222333333467889999999643211 02233333321 2345566
Q ss_pred EEecCCch-----hhhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCC-hHHHHHHH
Q 000983 311 LVTSRTAR-----VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAIA 384 (1199)
Q Consensus 311 ivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 384 (1199)
|.||.... +.. .....+.+...+.++-.+++..++....... -......|++.+.|. +-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-------~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL-------TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-------CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-------CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66776442 222 2335678888999999999988775432110 123456788888884 44444444
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=2.8e-05 Score=78.15 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=88.2
Q ss_pred cccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCc-----ccCcccccCccccEEeccCCCccc---
Q 000983 557 VVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIKV--- 628 (1199)
Q Consensus 557 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~--- 628 (1199)
.+...+.|++|.+.........-...+...+...+.|++|+|++|.+. .+...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 356778899999872101111223345667788899999999999986 355667777899999999999873
Q ss_pred --cchhhcccCcccEEec--CCCCcccc----cchhhccccccceeeccccccc
Q 000983 629 --LPNSICNLYNLQTLKL--IGCIWIME----LPKDLANLVKLRNLELEEMFWF 674 (1199)
Q Consensus 629 --lp~~i~~L~~L~~L~L--~~~~~l~~----lp~~i~~L~~L~~L~l~~n~~~ 674 (1199)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6778888999999999 77875433 4455667789999999998654
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.78 E-value=0.00044 Score=75.61 Aligned_cols=185 Identities=16% Similarity=0.123 Sum_probs=99.5
Q ss_pred CccccchhhHHHHHHHHhCCC-----C-CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDE-----F-DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~-----~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.+..++.+.+++.... . .-....+.+.|+|++|+||||+|+++++. ....| +.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHhh---
Confidence 468999999999888763210 0 00112457789999999999999999973 22222 2233322110
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCcc-------C----hHHHHHhhhCC-----CCCc
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR-------K----WEPLQQLLKQG-----HKGS 308 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~-------~----~~~l~~~l~~~-----~~gs 308 (1199)
. ............+......++.+|++|++...... . ...+...+... +.+.
T Consensus 93 -----------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 -----------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp -----------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred -----------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 0 00111122222222333456789999999542110 0 11222222211 1345
Q ss_pred EEEEecCCch-----hhhhhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH-HHHH
Q 000983 309 RVLVTSRTAR-----VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKA 382 (1199)
Q Consensus 309 ~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 382 (1199)
.||.||.... +... ....+.+...+.++..+++...+...... -..+....|++.+.|.+- ++..
T Consensus 161 ~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~-------~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSP-------LDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp EEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCC-------SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHcCCCCHHHHHH
Confidence 5666776542 2222 23467778888888888887766432211 113456678888988875 4544
Q ss_pred HH
Q 000983 383 IA 384 (1199)
Q Consensus 383 ~~ 384 (1199)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 198
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=3.5e-05 Score=77.28 Aligned_cols=122 Identities=15% Similarity=0.235 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhccc
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK 255 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 255 (1199)
....++.+.+++..-. ......+.|+|++|+||||||+++++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 3444555555554332 1224588999999999999999999842212222 223433 33444444433322
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccCh--HHHHHhhhCC-CCCcEEEEecCCc
Q 000983 256 MEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKW--EPLQQLLKQG-HKGSRVLVTSRTA 317 (1199)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTtR~~ 317 (1199)
... ......+ . +.-+|||||++....+.| +.+...+... ..|..||+||...
T Consensus 89 ~~~-----~~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKD-----TKFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCC-----SHHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chH-----HHHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 1222222 2 445899999974333334 2344444322 2567888888753
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=4.3e-05 Score=78.25 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=62.4
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ 258 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~ 258 (1199)
.++.+..++.... .......+.|+|.+|+||||||+++++. .......++|+.+. .+...+......
T Consensus 37 ~~~~~~~~~~~~~--~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYE--PGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCC--SSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhh--hccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 4455566665432 1112257889999999999999999983 33333445666543 344444332211
Q ss_pred CCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHH--HH-HhhhCC-CCCcEEEEecCC
Q 000983 259 STSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEP--LQ-QLLKQG-HKGSRVLVTSRT 316 (1199)
Q Consensus 259 ~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~-~~l~~~-~~gs~iivTtR~ 316 (1199)
.....+...+.+ . -+|||||++......|.. +. ..+... ..+.++|+||..
T Consensus 104 --~~~~~~~~~~~~----~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDYIKK----V-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHHHHH----S-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHHhcC----C-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112223333322 2 399999997644344422 22 223221 245578888874
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.74 E-value=0.0003 Score=76.84 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=99.7
Q ss_pred CccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
.+++|.+..++++.+++...-. -.-...+.|.|+|++|+|||+||+++++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4688999888888777642100 00123457889999999999999999983 3222 22332 22
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc--------------cChHHHHHhhhC--CCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------------RKWEPLQQLLKQ--GHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~g 307 (1199)
.+..... +. ....+...+.......+.+|++|++..... .....+...+.. ...+
T Consensus 84 ~l~~~~~---g~------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMWF---GE------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHHH---TT------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhhc---Cc------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 3332221 11 111223333333345679999999952100 012344444432 2345
Q ss_pred cEEEEecCCchhh-hh-h---cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHH
Q 000983 308 SRVLVTSRTARVS-QI-M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLA 379 (1199)
Q Consensus 308 s~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 379 (1199)
..||.||...... .. . .....+.+...+.++-.+++...+...... ....+ ..+++.+.|.|=+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~----~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA----KDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC----SSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC----ccchH----HHHHHHcCCCCHH
Confidence 6777777654322 11 1 123468899999999889887776432211 11122 3556677777643
No 201
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.64 E-value=3.7e-05 Score=73.46 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=62.1
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
.++|++..+.++.+.+.... .... -|.|+|.+|+|||++|+.+++... -|+.+.-. . +....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~---~~~~-~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~---~~~~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA---KRTS-PVFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-E---YLIDM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH---TCSS-CEEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-T---HHHHC--
T ss_pred CceeCCHHHHHHHHHHHHHh---CCCC-cEEEECCCCccHHHHHHHHHHhCC--------CeEEechh-h---CChHh--
Confidence 57899888888877765321 0112 366999999999999999987322 22222211 1 10000
Q ss_pred hcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC-CCCcEEEEecCC
Q 000983 252 FHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGSRVLVTSRT 316 (1199)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 316 (1199)
. ..+.+.. +.-.|++|++.....+....+...+... ..+.+||+||..
T Consensus 67 --------------~-~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 --------------P-MELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------H-HHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------h-hhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0 1111111 2347899999766555555566655433 345788888764
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.62 E-value=0.0028 Score=70.19 Aligned_cols=177 Identities=18% Similarity=0.198 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
..++|.+..++.+...+.... ........+.|+|++|+||||||+.++.. ....|. ..-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~-~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~----~~sg~~~~--------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAK-MRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH----VTSGPVLV--------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHH-HHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE----EEETTTCC---------
T ss_pred HHccCcHHHHHHHHHHHHHHH-hcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE----EEechHhc---------
Confidence 457888877777665554320 00122457899999999999999999973 222221 11111110
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC--------C----------CcEEE-
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH--------K----------GSRVL- 311 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~--------~----------gs~ii- 311 (1199)
....+...+ ..+ .++-++++|++........+.+...+.... . ...++
T Consensus 89 -----------~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 89 -----------KQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -----------SHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -----------CHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 011111111 112 234477889885443223344433332211 0 11222
Q ss_pred EecCCchhhhhhc--CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHH
Q 000983 312 VTSRTARVSQIMG--IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1199)
Q Consensus 312 vTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 383 (1199)
.|++...+...+. ....+.+++.+.++-.+++.+.+-.... .-..+.+..|+++++|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-------~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-------EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-------CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-------CcCHHHHHHHHHhcCCChHHHHHH
Confidence 3444333322111 1225789999999999999887643221 112466889999999999655433
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=0.00034 Score=75.98 Aligned_cols=148 Identities=9% Similarity=0.037 Sum_probs=92.3
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc-cccccceeEEEEecC-CCChHHHHHHHHHhc
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTV-DYDLPRILKGMIEFH 253 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~ 253 (1199)
-++-++.+...+..+. ...+.++|++|+||||+|+.+++... .........++..+. ...+.. .+++++.+
T Consensus 2 ~~~~~~~L~~~i~~~~------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~ 74 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFL 74 (305)
T ss_dssp --CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHCCC------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHH
Confidence 3445566666665432 67888999999999999999986310 111122223443322 222222 22333332
Q ss_pred ccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc-hhhhhhcCCCceeCC
Q 000983 254 SKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIMGIRSPYLLE 332 (1199)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l~ 332 (1199)
.... ..+++-++|+|+++..+....+.+...+......+.+|++|.+. .+....... .+++.
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2110 12556789999998766666778888887766778877776543 444444444 89999
Q ss_pred CCChhHHHHHHHHHh
Q 000983 333 YLPEDQCWSIFKKIA 347 (1199)
Q Consensus 333 ~L~~~~~~~lf~~~a 347 (1199)
++++++..+.+.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999888776
No 204
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00083 Score=74.49 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=98.9
Q ss_pred CccccchhhHHHHHHHHhCC----CC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSD----EF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
+++.|.++.+++|.+.+.-+ +. -.-...+-|.++|++|.|||.||+++++ .....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 56788888888876654321 00 0112345677999999999999999998 333333 2333332211
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc--------cC------hHHHHHhhhC--CCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------RK------WEPLQQLLKQ--GHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~--------~~------~~~l~~~l~~--~~~g 307 (1199)
.....+...+...+...-+..+++|++|+++.--. .+ ...+...+.. ...+
T Consensus 221 -------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 01122223333333333456789999999963210 01 1122222332 2344
Q ss_pred cEEEEecCCchhhh-----hhcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 308 SRVLVTSRTARVSQ-----IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 308 s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
..||.||...+..+ .-..+..+.+...+.++-.++|+.+.-...-. ..-+ ..+|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~----~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT----RGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC----SSCC----HHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC----ccCC----HHHHHHHCCCCC
Confidence 45677776544321 11345678898888888889998776432211 1112 346677777754
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.60 E-value=0.00082 Score=76.49 Aligned_cols=188 Identities=14% Similarity=0.138 Sum_probs=98.6
Q ss_pred CCccccchhhHHHHHHHHhCCC----C-C-CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 170 TANVFGRDDDKERILHMLLSDE----F-D-EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~----~-~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
-.+++|.+..++.+..++.... . . .....+-|.|+|.+|+|||+||+++++. ....| +.+.++.-..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~-- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTS-- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhc--
Confidence 3578999999999988773210 0 0 0112457789999999999999999873 22222 2222221111
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC-------ccCh----HHHHHhhhC----CCCCc
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED-------YRKW----EPLQQLLKQ----GHKGS 308 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~-------~~~~----~~l~~~l~~----~~~gs 308 (1199)
.. .......+...+...-..+..+|+||+++... .... ..+...+.. .....
T Consensus 187 ~~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 187 KY-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred cc-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 00 00111222222222223456799999995320 0011 122222221 12334
Q ss_pred EEEEecCCch-hhhh-hc-CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCChH-HHHHHH
Q 000983 309 RVLVTSRTAR-VSQI-MG-IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKAIA 384 (1199)
Q Consensus 309 ~iivTtR~~~-v~~~-~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 384 (1199)
.||.||.... +-.. .. ....+.+...+.++..+++...+...... -..+....|++.+.|..- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-------l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-------LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-------SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666665432 2111 11 22357888899999999998877543221 113456788888888554 554443
No 206
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.60 E-value=0.00084 Score=77.55 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=100.0
Q ss_pred CccccchhhHHHHHHHHhC----CC-C-CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLS----DE-F-DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~-~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.+..++.+...+.. .. . ......+-|.|+|++|+|||+||+++++. . ...-++.++.. .
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~----~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSS----D 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHH----H
Confidence 5689999999888877631 00 0 00123467889999999999999999983 2 11223333322 1
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-------cChHHHHH-hh---hC---CCCCcEE
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-------RKWEPLQQ-LL---KQ---GHKGSRV 310 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-------~~~~~l~~-~l---~~---~~~gs~i 310 (1199)
+.... .+. .......+ +...-..++.+|+||+++.... .....+.. .+ .. ...+..|
T Consensus 204 l~~~~---~g~---~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVSKW---LGE---SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHhhh---cch---HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11110 010 11122222 2222235678999999964311 11122222 22 11 1345667
Q ss_pred EEecCCchhhh-h-h-cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCC-hHHHHHHH
Q 000983 311 LVTSRTARVSQ-I-M-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAIA 384 (1199)
Q Consensus 311 ivTtR~~~v~~-~-~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 384 (1199)
|.||....... . . .....+.+...+.++..++|..++..... .--......|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-------~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-------SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-------ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-------CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 76776543211 1 1 22346778888888888899887643221 00124456788888884 44444443
No 207
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.58 E-value=2.7e-05 Score=87.01 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=39.9
Q ss_pred hccCCcccEEecCCCCCc----------ccCcccccCccccEEeccCCCccccchhhcccCcccEEecCCCCcccccchh
Q 000983 587 FHQLKYLRLLDLSSSTLT----------VLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKD 656 (1199)
Q Consensus 587 ~~~l~~Lr~L~L~~~~l~----------~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 656 (1199)
...+++|+.|.+.+.... .++..+..+++|+.|+|++|.-..+|. + .+++|++|++..|.+.......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 344556666666443211 233334455666666666652123333 3 2566666666655533222223
Q ss_pred hc--cccccceeecc
Q 000983 657 LA--NLVKLRNLELE 669 (1199)
Q Consensus 657 i~--~L~~L~~L~l~ 669 (1199)
+. .+++|++|+|+
T Consensus 213 l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHSBCTTCCEEEEE
T ss_pred HHHccCCCCcEEEEe
Confidence 32 45666666654
No 208
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.54 E-value=0.00055 Score=75.45 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=74.3
Q ss_pred ccccchhhHHHHHHHHhCCC---CCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 172 NVFGRDDDKERILHMLLSDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
.++|.+..++.+...+.... .........+.++|.+|+|||++|+.+++. ....-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 46788888888877765421 011223468899999999999999999973 22111123444544332221 1222
Q ss_pred HHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000983 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1199)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1199)
++..... .........+...+.. ...-+|+||++..........+...+..+. ....||+||..
T Consensus 95 l~g~~~~-~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 95 LIGAPPG-YVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHCCCTT-STTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred hcCCCCc-cccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 2211000 0001111223333322 345699999997766555666766664321 23447777765
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=1.8e-05 Score=83.55 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=66.2
Q ss_pred EecCCCCCcccCcc----cccCccccEEeccCCCcccc---chhhcccCcccEEecCCCCcccccchhhcccc--cccee
Q 000983 596 LDLSSSTLTVLPDS----VEELKLLRYLDLSRTEIKVL---PNSICNLYNLQTLKLIGCIWIMELPKDLANLV--KLRNL 666 (1199)
Q Consensus 596 L~L~~~~l~~lp~~----i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L 666 (1199)
++++.|....++.. ..++++|+.|+|++|.|..+ |..+.++++|++|+|++|.+. .+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceE
Confidence 55666654443322 24688999999999988865 467789999999999998843 33 3455555 89999
Q ss_pred ecccccccccccCCC-------CcCCccccCccCeE
Q 000983 667 ELEEMFWFKCSTLPA-------GIGKLTNLHNLHVF 695 (1199)
Q Consensus 667 ~l~~n~~~~~~~lp~-------~i~~l~~L~~L~l~ 695 (1199)
+|++|.+. ..+|. .+..+++|+.|+..
T Consensus 226 ~L~~Npl~--~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 226 WLDGNSLC--DTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp ECTTSTTG--GGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred EccCCcCc--cccCcchhHHHHHHHHCcccCeECCc
Confidence 99999764 23331 24566777777643
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.52 E-value=0.00066 Score=78.86 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=101.6
Q ss_pred CccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
..++|.+..++++.+++..... -.....+-|.|+|.+|+|||++|+++++. ....| +.+.++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 4689999999998877643100 00122345789999999999999999873 32222 222221
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-----------cChHHHHHhhhC--CCCCcEE
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQ--GHKGSRV 310 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~--~~~gs~i 310 (1199)
. +.... .......+...+.....+++.+|+||+++.... .....+...+.. ...+.+|
T Consensus 273 ~----l~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 E----IMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp H----HHTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred H----hhhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1 11110 112223334444445567788999999932110 112334444432 2334566
Q ss_pred EEecCCch-hhhhh----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCC-hHHHHHH
Q 000983 311 LVTSRTAR-VSQIM----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAI 383 (1199)
Q Consensus 311 ivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 383 (1199)
|.||.... +-..+ .....+.+...+.++-.+++..++...... .... ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~----~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA----DDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC----TTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc----chhh----HHHHHHHccCCcHHHHHHH
Confidence 66776542 21111 223468899999999999998876432211 1112 24566777764 4444433
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.50 E-value=0.0012 Score=72.71 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=83.6
Q ss_pred CccccchhhHHHHHHHHhCC----CCC----CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC-
Q 000983 171 ANVFGRDDDKERILHMLLSD----EFD----EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD- 241 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~- 241 (1199)
..++|.+..++.+...+... ... ......-+.|+|.+|+|||++|+.+++. .... .+.+.++.-.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~~---~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANAP---FIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEcchhcccC
Confidence 45889999999888777541 000 0012345679999999999999999973 2221 23333332211
Q ss_pred ------hHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccC------------hHHHHHhhhC
Q 000983 242 ------LPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK------------WEPLQQLLKQ 303 (1199)
Q Consensus 242 ------~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~------------~~~l~~~l~~ 303 (1199)
....++++...... .+.. .+++.+|++|+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11112222211100 0100 1235799999997544333 4555555543
Q ss_pred C----------CCCcEEEEecC----Cc-----hhhhhhcCCCceeCCCCChhHHHHHHHH
Q 000983 304 G----------HKGSRVLVTSR----TA-----RVSQIMGIRSPYLLEYLPEDQCWSIFKK 345 (1199)
Q Consensus 304 ~----------~~gs~iivTtR----~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (1199)
. ..+..+|.|+. .. .+...+ ...+.+.+++.++..+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12455666642 11 122222 24689999999998888874
No 212
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.50 E-value=0.00034 Score=88.33 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=80.6
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc---cccc-c-eeEEEEecCCCChHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV---REHF-E-SRMWVCVTVDYDLPRI 245 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F-~-~~~wv~~~~~~~~~~~ 245 (1199)
+.+|||+.++.+++..|.... ..-+.++|.+|+||||+|+.+++...- .... + ..+++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 568999999999999997643 234579999999999999999973210 0011 1 122332211100
Q ss_pred HHHHHHhcccCCCCCCcHHHHHHHHHHHhC-CCeEEEEEecCCCcC--------ccChHHHHHhhhCCCCCcEEEEecCC
Q 000983 246 LKGMIEFHSKMEQSTSSISLLETRLLEFLT-GQRFLLVLDDVWNED--------YRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1199)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1199)
...........+...+...-. +++.+|++|++.... .+....+...+.. .+..+|.+|..
T Consensus 240 ---------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~ 308 (854)
T 1qvr_A 240 ---------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTL 308 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECH
T ss_pred ---------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCc
Confidence 000001111222233332222 468999999996432 1112234444432 23345555543
Q ss_pred chh-----hh-hhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 317 ARV-----SQ-IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 317 ~~v-----~~-~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
... .. .......+.+.+++.++..+++....
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 322 11 11222458899999999999886543
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0016 Score=73.55 Aligned_cols=180 Identities=12% Similarity=0.098 Sum_probs=98.9
Q ss_pred CCccccchhhHHHHHHHHhCC---CC----CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSD---EF----DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
-+++.|.++.+++|.+.+.-. .. ..-...+-|.++|++|.|||+||+++++. ....| +.|..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc-
Confidence 356788988888876655321 00 01234567789999999999999999983 33222 2333332211
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC-------c--cC-----hHHHHHhhhC--CCC
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED-------Y--RK-----WEPLQQLLKQ--GHK 306 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~-------~--~~-----~~~l~~~l~~--~~~ 306 (1199)
.........+...+...-...+++|++|+++..- . +. ...+...+.. ...
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 0112222233333333335678999999996311 0 00 1223333332 234
Q ss_pred CcEEEEecCCchhhhh--hc---CCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 307 GSRVLVTSRTARVSQI--MG---IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 307 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
+..||.||...+..+. .. .+..+.+...+.++-.++|+.+....... ..-+ ...|++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~----~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT----GEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC----SCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC----cccC----HHHHHHhCCCCC
Confidence 5577778875543321 11 23467788888888888888776443211 1112 246677777754
No 214
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.0012 Score=75.39 Aligned_cols=109 Identities=11% Similarity=0.113 Sum_probs=62.0
Q ss_pred ccccccCCC-CccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCC---CcccC-cccccCccccEEeccCCCccc
Q 000983 554 ALSVVENSK-KLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSST---LTVLP-DSVEELKLLRYLDLSRTEIKV 628 (1199)
Q Consensus 554 ~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---l~~lp-~~i~~l~~Lr~L~L~~~~i~~ 628 (1199)
...+|.+++ .|.++.++ +.+..+-..+|.++.+|+.+.+..+. ++.+. ..|.++..|+.+.+..+ ++.
T Consensus 55 g~~aF~~~~~~L~sI~iP------~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIP------DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp CTTTTTTCCSCCCEEEEC------TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred CHhhccCCCCcCEEEEEC------CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 334466653 47777765 12333445567777777777776543 44443 34666777777666554 455
Q ss_pred cch-hhcccCcccEEecCCCCcccccchhhccccccceeeccc
Q 000983 629 LPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1199)
Q Consensus 629 lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 670 (1199)
++. .|.++.+|+.+.+..+. ...-...+..+.+|+.+.+..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCT
T ss_pred ehhhhhhhhccccccccccee-eeecccceecccccccccccc
Confidence 543 46677777777775421 222223455666666666654
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.41 E-value=0.00063 Score=79.18 Aligned_cols=148 Identities=15% Similarity=0.230 Sum_probs=78.9
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccccccc-----ceeEEEEecCCCChHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF-----ESRMWVCVTVDYDLPRI 245 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~~~~~~~~~~~ 245 (1199)
+.+|||+.+++.++..+.... ..-+.|+|.+|+|||++|+.++.. +...+ ...-++.+.-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 469999999999999997543 224569999999999999999973 21111 11112211111
Q ss_pred HHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhh----
Q 000983 246 LKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ---- 321 (1199)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~---- 321 (1199)
....+ ....... ..+...-..++.+|++|. ..+....+...+.. ...++|.+|.......
T Consensus 246 ----~~~~g---~~e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 ----TKYRG---EFEDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred ----ccccc---hHHHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 00000 0011222 222222345678899991 11222233333321 2345666655443111
Q ss_pred ---hhcCCCceeCCCCChhHHHHHHHHHhc
Q 000983 322 ---IMGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 322 ---~~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
.......+.+...+.++..+++...+-
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 111223688999999999999987653
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.40 E-value=0.00053 Score=73.49 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=32.8
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+.++|.+..+.++.+.+.... .....|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 357899988888877665422 11234679999999999999999973
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=0.0021 Score=68.36 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=92.9
Q ss_pred CccccchhhHHHHHHHH---hCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHML---LSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
++++|.+..++++.+.+ ..... -.....+-+.|+|.+|+||||||+++++. ....| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 56889988777765543 22110 00011334789999999999999999973 22222 2222211100
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc---------c-----ChHHHHHhhhC--CCCCc
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY---------R-----KWEPLQQLLKQ--GHKGS 308 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~---------~-----~~~~l~~~l~~--~~~gs 308 (1199)
.........+...+.........++++|+++.... . ....+...+.. ...+.
T Consensus 84 ------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 ------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp ------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred ------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00112223333444444455678999999832110 0 11122222322 23445
Q ss_pred EEEEecCCch-hhhhh----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCC-ChHHHH
Q 000983 309 RVLVTSRTAR-VSQIM----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG-LPLAVK 381 (1199)
Q Consensus 309 ~iivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~ 381 (1199)
.||.||.... +...+ .....+.+...+.++-.+++...+-...- .++ .....++..+.| .+--|.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l------~~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL------APD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB------CTT--CCHHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC------Ccc--ccHHHHHHHcCCCCHHHHH
Confidence 6777776543 21111 12346778888888888888776533211 111 112356777777 554333
No 218
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.38 E-value=8.7e-05 Score=71.17 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=50.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
...++|+|..|+|||||++.++...... .+ ..+++....-... .. ..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-----------------------------~~-~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-----------------------------DA-AFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-----------------------------GG-GGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-----------------------------HH-HhC
Confidence 4488999999999999999999843221 11 2455544332211 01 124
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhCC-CCCc-EEEEecCC
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGS-RVLVTSRT 316 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~ 316 (1199)
.-+|||||+...+...-+.+...+... ..|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 458899999654332233344443321 2233 58888884
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0025 Score=71.70 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=97.2
Q ss_pred CccccchhhHHHHHHHHhC----CCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLS----DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
+++.|.++.+++|.+.+.- ... -.-...+-|.++|++|.|||+||+++++ .....| +.|..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 4688888888888665421 000 0113456778999999999999999998 333333 2233322111
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc------c--C------hHHHHHhhhC--CCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY------R--K------WEPLQQLLKQ--GHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~------~--~------~~~l~~~l~~--~~~g 307 (1199)
.........+...+...-...+++|++|+++..-. . . ...+...+.. ...+
T Consensus 282 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 -------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 01122223333334444456789999999963210 0 0 1112222222 2234
Q ss_pred cEEEEecCCchhhhh--h---cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 308 SRVLVTSRTARVSQI--M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 308 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
..||.||...+.... . ..+..+.+...+.++-.++|+.+.-..... ..-+ ...|++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~----~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE----RGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC----SSCC----HHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC----CCCC----HHHHHHHCCCCC
Confidence 456667765433211 1 234578888888888889998776432211 1112 245677777753
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0015 Score=73.62 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=92.9
Q ss_pred CCccccchhhHHHHHHHHhCC---CC----CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSD---EF----DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
-+++.|.++.+++|.+.+... .. -+-...+-|.++|++|+|||+||+++++. ....| +.|..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc-
Confidence 356889998888886655321 00 01233556789999999999999999983 33333 2333332211
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc--------Cc-c-C----hHHHHHhhhC--CCC
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE--------DY-R-K----WEPLQQLLKQ--GHK 306 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~--------~~-~-~----~~~l~~~l~~--~~~ 306 (1199)
.........+...+...-...+.+|++|+++.. .. + . ...+...+.. ...
T Consensus 245 --------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 --------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp --------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred --------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 011222233333343344567899999999420 00 1 1 1223333322 234
Q ss_pred CcEEEEecCCchhhh-h-h---cCCCceeCCCCCh-hHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 307 GSRVLVTSRTARVSQ-I-M---GIRSPYLLEYLPE-DQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 307 gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
+..||.||...+..+ . . ..+..+++..++. ++-.++|..+.-.... . ..-++ ..|++.+.|.-
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~---~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-A---PEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-C---TTCCH----HHHHHHTTTCC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-C---cccCH----HHHHHHCCCCC
Confidence 556777776543321 1 1 1223567765654 4555666665533221 1 11122 45666776653
No 221
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.31 E-value=0.014 Score=66.18 Aligned_cols=130 Identities=14% Similarity=0.138 Sum_probs=80.8
Q ss_pred ccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCCCCC--CCCCCccceEEEccCCCCCCCcccccCCCCCCcce
Q 000983 969 SQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNL 1046 (1199)
Q Consensus 969 ~~~L~~L~l~~~~~~~~~~~l~~l~sL~~L~L~~n~~l~~~~~--~~~l~~L~~L~l~~c~~L~~l~~~~~l~~l~~L~~ 1046 (1199)
..+|+.+.+..+-.......+.++.+|+.+.+..+ +..+.. +..+.+|+.+.+.. .++.++. ..|.++++|+.
T Consensus 216 ~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~-~aF~~c~~L~~ 290 (379)
T 4h09_A 216 GKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPY-LLCSGCSNLTK 290 (379)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECT-TTTTTCTTCCE
T ss_pred ccccceeeeccceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccc-ccccccccccc
Confidence 35566666654433333345667778888887665 333332 46677788887754 2555554 57778888888
Q ss_pred EEecCCCCCCcCCCCCcc--CCcceEEeccCCCCcccCCCCCCCCCCCCCceeecCCCCCCCCCC
Q 000983 1047 LSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPE 1109 (1199)
Q Consensus 1047 L~l~~c~~l~~l~~~~~~--~sL~~L~l~~c~~L~~lp~~~~l~~l~sL~~L~i~~c~~l~~lp~ 1109 (1199)
+.+.++ .++.++...+. .+|+.+.|.. +++.++. ..|.+|++|+++.+.. .++.+..
T Consensus 291 i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 291 VVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV-YAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCCCCCCT--TCCEECT
T ss_pred cccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH-HHhhCCCCCCEEEECC--ccCEEch
Confidence 888763 36666665554 6788888753 3667765 4677777777777643 2444443
No 222
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.29 E-value=0.00048 Score=76.89 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=61.9
Q ss_pred CceeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHh--ccCCcccEEecCCC--C------CcccC
Q 000983 538 PETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIF--HQLKYLRLLDLSSS--T------LTVLP 607 (1199)
Q Consensus 538 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~--~------l~~lp 607 (1199)
+..+.|.+..+....+. .+ ..++|+.|.+.. +.+....-..+ ..+++|+.|+|+.+ . +..+.
T Consensus 172 P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~-----~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIIS-----GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TTCCEEEEECCBTCBCC--SC-BCTTCSEEEEEC-----SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred CCCcEEEEeCCCCceec--cc-cCCCCcEEEEec-----CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 45666666554211111 12 256666666651 11111111122 25677777776421 1 11121
Q ss_pred ccc--ccCccccEEeccCCCccc-cchhh---cccCcccEEecCCCCcccc----cchhhccccccceeecccccc
Q 000983 608 DSV--EELKLLRYLDLSRTEIKV-LPNSI---CNLYNLQTLKLIGCIWIME----LPKDLANLVKLRNLELEEMFW 673 (1199)
Q Consensus 608 ~~i--~~l~~Lr~L~L~~~~i~~-lp~~i---~~L~~L~~L~L~~~~~l~~----lp~~i~~L~~L~~L~l~~n~~ 673 (1199)
..+ ..+++|++|+|++|.+.. .+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|+++.|.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 122 235677777777766542 22222 2466677777766653321 344445566677777766644
No 223
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.27 E-value=0.0025 Score=72.75 Aligned_cols=124 Identities=11% Similarity=0.138 Sum_probs=73.7
Q ss_pred eeEEEEEeccCCCCccccccCCCCccEEecccCCCcccchhhhHHHHhccCCcccEEecCCCCCcccC-cccccCccccE
Q 000983 540 TRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRY 618 (1199)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~ 618 (1199)
...+.+.. .+..+...+|.++.+|+++.+. ......+..+...+|..+..|+.+.+..+ ++.++ ..|..+.+|+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~--~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQ--DNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEG--GGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeec--CCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 45555542 3555666677888888887764 11111233344556777777777766543 44443 34677788888
Q ss_pred EeccCCCccccch-hhcccCcccEEecCCCCcccccchhhccccccceeeccc
Q 000983 619 LDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1199)
Q Consensus 619 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 670 (1199)
+.+..+ +..++. .+..+.+|+.+.+..+ +..+........+|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 888654 444433 5777888888887653 334443333345677776654
No 224
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.20 E-value=0.00049 Score=75.05 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+.++|+...+.++.+.+.... ....-|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 357899998888888775532 11234669999999999999999973
No 225
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0039 Score=69.33 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=95.0
Q ss_pred CccccchhhHHHHHHHHhC----CCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLS----DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
+++.|.++.+++|.+.+.- ... ..-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 4677888888877665432 100 01233566789999999999999999983 33333 2222222111
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc--------cC------hHHHHHhhhC--CCCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------RK------WEPLQQLLKQ--GHKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~--------~~------~~~l~~~l~~--~~~g 307 (1199)
.....+...+...+...-+..+++|++|+++..-. .. ...+...+.. ...+
T Consensus 255 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 255 -------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred -------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 01122222233333333346789999999963110 00 1122222222 2344
Q ss_pred cEEEEecCCchhhhh-h----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 308 SRVLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 308 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
..||.||-..+..+. + ..+..+.+...+.++-.++|..+.-...- . ..-++ ..|++.+.|.-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~---~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-S---EDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-C---SCCCH----HHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-C---CcCCH----HHHHHhCCCCC
Confidence 566777765544322 1 12235778877888888888877643221 1 11122 45666776653
No 226
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0015 Score=73.82 Aligned_cols=179 Identities=14% Similarity=0.098 Sum_probs=95.1
Q ss_pred CccccchhhHHHHHHHHhC----CCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLS----DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
+++.|.++.+++|.+.+.. ... ..-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh--
Confidence 5688999888888765321 100 01233567789999999999999999983 33322 2233222111
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCc-------Ccc---C----hHHHHHhhhCC--CCC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-------DYR---K----WEPLQQLLKQG--HKG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~-------~~~---~----~~~l~~~l~~~--~~g 307 (1199)
.........+...+...-...+++|++|+++.. ... . ...+...+... ..+
T Consensus 254 -------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 254 -------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 011122222233333333456899999999521 000 1 11223333222 234
Q ss_pred cEEEEecCCchhhhh-h----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 308 SRVLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 308 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
-.||.||...+..+. + ..+..+.+...+.++-.++|+.+.-..... ..-+ ..+|++.+.|.-
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~----~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD----DDIN----WQELARSTDEFN 387 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC----SCCC----HHHHHHHCSSCC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC----CcCC----HHHHHHhCCCCC
Confidence 456667776543321 1 223467888888888888887665432211 1112 245677777653
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.17 E-value=0.0028 Score=73.63 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=58.4
Q ss_pred EEEEecCCCcCccChHHHHHhhhCCCCCcEEE-Ee---------cC----Cchhh-hhhcCCCceeCCCCChhHHHHHHH
Q 000983 280 LLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL-VT---------SR----TARVS-QIMGIRSPYLLEYLPEDQCWSIFK 344 (1199)
Q Consensus 280 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vT---------tR----~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1199)
++++|++...+.+.++.+...+...... -+| .| |. ...+. ........+.+.+++.++..+.+.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999877666777777777654444 344 44 32 11111 111222357899999999999998
Q ss_pred HHhcCCCCCCccccchhHHHHHHHHHHhc-CCChHHHHHHH
Q 000983 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKC-KGLPLAVKAIA 384 (1199)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPLai~~~~ 384 (1199)
..+-..+.. --.+....|++.+ +|.|-.+..+.
T Consensus 377 ~~~~~~~~~-------~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTEGIN-------ISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHTCC-------BCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHhCCC-------CCHHHHHHHHHHccCCCHHHHHHHH
Confidence 776321110 1134566777777 78776544443
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.13 E-value=0.003 Score=72.58 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=95.7
Q ss_pred CccccchhhHHHHHHHHh---CCC---CCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLL---SDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.+..++++.+.+. ... .-.....+-|.|+|++|+|||+||++++.. ....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 468899887776655432 210 000111234779999999999999999973 22222 22333221110
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc--------------cChHHHHHhhhC--CCCCc
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------------RKWEPLQQLLKQ--GHKGS 308 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~gs 308 (1199)
........+...+.+.....+.+|+||+++.... .....+...+.. ...+.
T Consensus 89 -------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 -------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred -------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0011122333444444556789999999954211 012233333321 23456
Q ss_pred EEEEecCCchhhh-h-h---cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 309 RVLVTSRTARVSQ-I-M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 309 ~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
.||.||...+... . . .....+.+...+.++-.+++..++-...-. ...+ ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~----~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA----EDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC----TTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc----chhh----HHHHHHhcCCCc
Confidence 6777777654432 1 1 122367888888888888887766432211 1111 234777888876
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.13 E-value=0.0023 Score=79.88 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhccccc---cc-ccceeEEEEecCCCChHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV---RE-HFESRMWVCVTVDYDLPRIL 246 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~~~~~~~~~~~ 246 (1199)
+.++||+.+++++++.|.... ..-+.|+|.+|+||||+|+.+++...- .. .+...+|. +. ...+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~----~~~l- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LD----IGSL- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CC----CC---
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-Ec----HHHH-
Confidence 568999999999999997543 334579999999999999999873210 00 11222221 11 0000
Q ss_pred HHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-----cChHHHHHhhhC--CCCCcEEEEecCCchh
Q 000983 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----RKWEPLQQLLKQ--GHKGSRVLVTSRTARV 319 (1199)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-----~~~~~l~~~l~~--~~~gs~iivTtR~~~v 319 (1199)
.........-...+...+...-..++.+|++||+..... ..-......+.. ...+.++|.+|.....
T Consensus 254 ------~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 ------LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_dssp -------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHH
T ss_pred ------hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHH
Confidence 000011111122233333333344678999999964310 011222223321 1234566666654332
Q ss_pred hhhh-------cCCCceeCCCCChhHHHHHHHHHh
Q 000983 320 SQIM-------GIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 320 ~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
...+ .....+.+...+.++..+++...+
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1111 111358899999999988887654
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.12 E-value=0.0023 Score=79.74 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=79.6
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccc---cccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER---VREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
+.+|||+.+++++...+.... ..-+.++|.+|+|||++|+.+++... +.......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 469999999999999997643 22357999999999999999987310 000001111221111
Q ss_pred HHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhh------
Q 000983 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ------ 321 (1199)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~------ 321 (1199)
+.. ........+...+......++.+|++|.- . +....+...+. ....++|.||.......
T Consensus 245 ------g~~-~~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 ------GTK-YRGEFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred ------ccc-ccchHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 000 00001112223333333467789999921 1 12222333332 22356666665443111
Q ss_pred -hhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 322 -IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 322 -~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
.......+.+...+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11122468899999999999998654
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.03 E-value=0.0015 Score=81.49 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..++|.+..++.+...+..... ........+.++|++|+|||++|+++++. ....-...+-+.++.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4688999988888777764321 11233447889999999999999999973 21111122334433221100
Q ss_pred HHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC-----------CCCcEEEEecCC
Q 000983 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-----------HKGSRVLVTSRT 316 (1199)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 316 (1199)
......+...+++ ...-+|+||++.....+....+...+..+ ....+||+||..
T Consensus 565 ------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0001111222222 23348999999776666666777766542 135688888873
Q ss_pred ch-----h----hhhh-----c-CCCceeCCCCChhHHHHHHHHHh
Q 000983 317 AR-----V----SQIM-----G-IRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 317 ~~-----v----~~~~-----~-~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
.. + ...+ . ....+.+.+++.++-.+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 1 1111 1 12467788888777766665543
No 232
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.96 E-value=0.00041 Score=74.56 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=79.5
Q ss_pred CccccchhhHHHHHHHHhCCCCC------CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFD------EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.+..++.+.+.+..-... .....+-+.|+|.+|+|||+||+++++. ....|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHHH---
Confidence 46889888877776655310000 0011223679999999999999999983 222221 111111000
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCcc---------------ChHHHHHhhhCC---CC
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR---------------KWEPLQQLLKQG---HK 306 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~---------------~~~~l~~~l~~~---~~ 306 (1199)
..... .......+ +......+..+|++||++..... ....+...+... ..
T Consensus 83 -------~~~~~--~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGL--GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSS--CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcch--HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 00000 01111111 22222345679999999532110 122232222211 12
Q ss_pred CcEEEEecCCchhhh-h-h---cCCCceeCCCCChhHHHHHHHHHhc
Q 000983 307 GSRVLVTSRTARVSQ-I-M---GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 307 gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
...||.||....... . . .....+.+...+.++-.+++...+.
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 246777777553211 1 1 1234678888888888888877653
No 233
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.95 E-value=0.0015 Score=72.53 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=84.7
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
.++|++..++.+...+.... -+.++|.+|+|||+||+.+++ .....| ..+.+.......++. .
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~----g 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLI----G 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHH----E
T ss_pred ceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcC----C
Confidence 47899999988888876542 467999999999999999987 332222 223333333333221 1
Q ss_pred hcccCCCCCCcHHHHHHHHHHHhCC--CeEEEEEecCCCcCccChHHHHHhhhCC-----------CCCcEEEEecCCch
Q 000983 252 FHSKMEQSTSSISLLETRLLEFLTG--QRFLLVLDDVWNEDYRKWEPLQQLLKQG-----------HKGSRVLVTSRTAR 318 (1199)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~~ 318 (1199)
........ ... ..-.+ ...++++|++..........+...+... .....||.|+....
T Consensus 91 ~~~~~~~~-~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 91 TMIYNQHK-GNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp EEEEETTT-TEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred ceeecCCC-Cce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 11000000 000 00001 1258999999766555555555555422 23455665665221
Q ss_pred ------hhhh-hcCCC-ceeCCCCChhHHHHHHHHHhcC
Q 000983 319 ------VSQI-MGIRS-PYLLEYLPEDQCWSIFKKIAFN 349 (1199)
Q Consensus 319 ------v~~~-~~~~~-~~~l~~L~~~~~~~lf~~~a~~ 349 (1199)
+... ..... .+.+...+.++-.+++...+..
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1111 11122 4788889999988888877643
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.86 E-value=0.0044 Score=67.08 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...+.+.++|++|+|||+||+++++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999983
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.83 E-value=0.00066 Score=74.08 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...+.+.+++.... ......+.|+|.+|+|||+||+++++.
T Consensus 135 ~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 135 EAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445556665432 112356789999999999999999984
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.82 E-value=0.018 Score=65.27 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=44.9
Q ss_pred ccCCCCCCcEEEEeecCCCCCCcccccCccCceeEEEEeCccCcccc--CcCCcCCcCeEEecCCCCceecC--CCCCcc
Q 000983 770 DLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP--NDEDCR 845 (1199)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~--~~~~~~ 845 (1199)
.+..+.+|+.+.+.+. ...++...+ ..+.+|+.+.+.++...... .+.++.+|+.+.|..+ ++.++ .+.++.
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~ 333 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLC-SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTT-TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ccceeehhcccccccc-ceecccccc-ccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCC
Confidence 3445667777777543 233333322 45677888888766544433 6777788888877543 33333 344555
Q ss_pred ccccccc
Q 000983 846 FLGRLKI 852 (1199)
Q Consensus 846 ~L~~L~l 852 (1199)
+|+.+.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 5555543
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.0023 Score=75.76 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=77.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
.+++|.+.-+..+.+.+.-..........++.++|++|+||||||+.++.. ....|- -+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~~---~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKFV---RISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEEE---EECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCeE---EEEecccchhhhhhhHHH
Confidence 457888877776654432111001124558999999999999999999973 322221 222222111111111100
Q ss_pred HhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCcc----ChHHHHHhhhCCC---------------CCcEEE
Q 000983 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR----KWEPLQQLLKQGH---------------KGSRVL 311 (1199)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~ii 311 (1199)
...+ .....+...+... ....-+++||+++..... ....+...+.... ....||
T Consensus 156 ~~ig------~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVG------AMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhc------cCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 0011 1111122222222 223348889999754322 1233333332111 335677
Q ss_pred EecCCch-----hhhhhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 312 VTSRTAR-----VSQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 312 vTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
.||.... +...+ ..+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 7776532 22222 367888888888888777654
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.75 E-value=0.012 Score=71.84 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=98.6
Q ss_pred CCccccchhhHHHHHHHHh----CCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLL----SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
-+++.|.++.+++|.+++. .... -.....+-|.++|++|+|||+||+++++. ...+| +.|..+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH-----
Confidence 3567888888877766543 2110 11234567889999999999999999983 33332 233222
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-------cCh----HHHHHhhhCC--CCCcE
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-------RKW----EPLQQLLKQG--HKGSR 309 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-------~~~----~~l~~~l~~~--~~gs~ 309 (1199)
+ +.. .........+...+....+..+.+|++|+++.--. +.- ..+...+... ..+..
T Consensus 273 -~----l~s-----k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 -E----IMS-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -H----HHS-----SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -H----hhc-----ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1 111 11122334444555555567789999999953110 111 1222222221 23345
Q ss_pred EEEecCCchhh-hhh----cCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 310 VLVTSRTARVS-QIM----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 310 iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
||.||...+.. ..+ .....+++...+.++-.++|..+....... ...+ ..+|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~----~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA----DDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC----TTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC----cccC----HHHHHHhcCCCC
Confidence 56666654322 111 223468888888888888888765332110 1112 345777777764
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.59 E-value=0.0014 Score=70.08 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=44.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEe--cCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV--TVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
.+++.|+|++|+||||||.+++.. .-..++|+++ ....+. . ..+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 457789999999999999999873 1224567777 222110 0 1334555555555565
Q ss_pred CCeEEEEEecCC
Q 000983 276 GQRFLLVLDDVW 287 (1199)
Q Consensus 276 ~k~~LlVlDdvw 287 (1199)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 555 99999994
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.37 E-value=0.012 Score=73.46 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=72.5
Q ss_pred CccccchhhHHHHHHHHhCCC---CCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000983 171 ANVFGRDDDKERILHMLLSDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..++|.+..++.+...+.... .........+.++|.+|+|||++|+.+++. .. ...+-+.++.-....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~---- 528 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH---- 528 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSS----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchh----
Confidence 457899988888877665321 011234457889999999999999999973 22 122333333221100
Q ss_pred HHHHhcccCCCC-C-CcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEec
Q 000983 248 GMIEFHSKMEQS-T-SSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTS 314 (1199)
Q Consensus 248 ~i~~~~~~~~~~-~-~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (1199)
.+.+.++..... . .....+...+++ ....+|+||++.....+....+...+..+. ....||+||
T Consensus 529 ~~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 529 TVSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp CCSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred hHhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 000001110000 0 001122333322 346799999997766666667777665321 335577777
Q ss_pred CC
Q 000983 315 RT 316 (1199)
Q Consensus 315 R~ 316 (1199)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 241
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.34 E-value=0.0068 Score=59.79 Aligned_cols=117 Identities=20% Similarity=0.096 Sum_probs=64.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC---CChHHHHHHHHH---hcccCC-CCC-------CcHHH
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD---YDLPRILKGMIE---FHSKME-QST-------SSISL 265 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~---~~~~~~-~~~-------~~~~~ 265 (1199)
.|-|++..|.||||.|-..+- +..++=..+.++.+.+. .....++..+.- ..+... ... .....
T Consensus 30 ~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 455666677999999987775 33333334555554442 222233322200 000000 000 11122
Q ss_pred HHHHHHHHhCCCeE-EEEEecCCC---cCccChHHHHHhhhCCCCCcEEEEecCCch
Q 000983 266 LETRLLEFLTGQRF-LLVLDDVWN---EDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1199)
Q Consensus 266 l~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1199)
.....++.+.+.+| |||||++-. -..-..+.+...+.......-||+|+|...
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 23345556666666 999999821 122455778888877777788999999853
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.32 E-value=0.021 Score=60.32 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=77.3
Q ss_pred CccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000983 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1199)
++++|.+..+.++.+....-.. .-.-... +.|+|.+|+||||||+.++... .. ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~--~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA--RV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHT--TC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHh--CC---CEEEeeHH------
Confidence 4678887666555443321000 0011122 8899999999999999999732 21 11222211
Q ss_pred HHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC----------ccCh----HHHHHhhhCCC--CC
Q 000983 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKW----EPLQQLLKQGH--KG 307 (1199)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~----~~l~~~l~~~~--~g 307 (1199)
.+ .... .......+...+...-.....++++|++.... ...+ ..+...+..+. ..
T Consensus 84 ~~----~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 DF----VEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp HH----HHSC-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HH----HHHH-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 1100 00111122222222222456899999993210 0111 22333333222 22
Q ss_pred cEEEEecCCchhhhh--h---cCCCceeCCCCChhHHHHHHHHHh
Q 000983 308 SRVLVTSRTARVSQI--M---GIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 308 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
.-++.||..+++... . .....+.+...+.++-.+++...+
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 334456665544321 1 233467888888888888887665
No 243
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.28 E-value=0.0037 Score=63.82 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=63.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCC--CCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS--TSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~l~~~l~ 275 (1199)
-.++.|+|..|.||||++..+++ +...+-..++.+....+ .+ -...++..++..... ......+.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 56889999999999999988887 33333233444433322 11 112333333322111 2233455556655555
Q ss_pred CCeE-EEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch
Q 000983 276 GQRF-LLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1199)
Q Consensus 276 ~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1199)
+.++ +||+|.+..-+.+..+.+.. +.+ .|-.||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 4545 99999995433233333333 332 3788999998653
No 244
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.26 E-value=0.018 Score=61.85 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=78.6
Q ss_pred CCccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
-++++|.+..+.++.+....-.. .-.-... +.|+|.+|+||||||+.++... .. ..+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~--~~---~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA--RV---PFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT--TC---CEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc--CC---CEEEecHH-----
Confidence 35688988776666544321100 0001122 8899999999999999999732 21 12222211
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC----------ccCh----HHHHHhhhCCCC--
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKW----EPLQQLLKQGHK-- 306 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~----~~l~~~l~~~~~-- 306 (1199)
.+ .... .......+...+...-.....++|+|++.... ...+ ..+...+..+..
T Consensus 108 -~~----~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DF----VEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HH----HHST-----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HH----HHHH-----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 11 1100 00011112222222223456899999994210 0111 122222322222
Q ss_pred CcEEEEecCCchhhhh-----hcCCCceeCCCCChhHHHHHHHHHhc
Q 000983 307 GSRVLVTSRTARVSQI-----MGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 307 gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
...++.||..+++... ......+.+...+.++-.+++...+-
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 2334446665544221 12345788988898888888887653
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.24 E-value=0.0088 Score=74.34 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=85.7
Q ss_pred CCccccchhhHHHHHHHHhCC----CC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSD----EF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
-++++|.+..++++.+++... .. -.-.....|.|+|.+|+||||||+.++. .....| +.+....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE---EEEEchH----
Confidence 357899999988888776430 00 0112345688999999999999999987 333222 2232211
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-----------cChHHHHHhhhCC--CCCcE
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQG--HKGSR 309 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~--~~gs~ 309 (1199)
+. . .........+...+.........++++|++..... .....+...+... ..+..
T Consensus 274 ------l~----~-~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ------IM----S-KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HS----S-SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ------hh----h-hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 10 0 00011122233333333345678999999942110 0112333333322 23445
Q ss_pred EEEecCCchhh-hhh----cCCCceeCCCCChhHHHHHHHHHhc
Q 000983 310 VLVTSRTARVS-QIM----GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1199)
Q Consensus 310 iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1199)
||.||....-. ..+ .....+.+...+.++-.+++...+-
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 66666653221 111 1123567888888888888887653
No 246
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.23 E-value=0.016 Score=59.78 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=50.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhccc-----------CCC-CCCcHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK-----------MEQ-STSSISL 265 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~-----------~~~-~~~~~~~ 265 (1199)
-.++.|+|.+|+||||||..++. ..-..++|++....++...+.. +.+..+. ... .......
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45899999999999999999986 1223567887766556555443 3322211 111 1122223
Q ss_pred HHHHHHHHhCCCeEEEEEecCC
Q 000983 266 LETRLLEFLTGQRFLLVLDDVW 287 (1199)
Q Consensus 266 l~~~l~~~l~~k~~LlVlDdvw 287 (1199)
....++..++.+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 3344444444457799999874
No 247
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.21 E-value=0.01 Score=74.84 Aligned_cols=136 Identities=16% Similarity=0.203 Sum_probs=71.9
Q ss_pred ccccchhhHHHHHHHHhCCC---CCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000983 172 NVFGRDDDKERILHMLLSDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1199)
.++|.+..++.+...+.... .+.......+.|+|.+|+|||++|+.+++. ....-...+.+.++.-.... ....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~~s~ 635 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 635 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-GGGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-HHHH
Confidence 57899998888877765421 011233467889999999999999999973 21111112333333221110 0000
Q ss_pred HHHhcccCCC--CCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCC-----------CCcEEEEecC
Q 000983 249 MIEFHSKMEQ--STSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSR 315 (1199)
Q Consensus 249 i~~~~~~~~~--~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 315 (1199)
+ ++.... .......+...++. ...-+|+||++...+.+....+...+..+. .+..||+||.
T Consensus 636 l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 636 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp C-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred H---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 0 000000 00001123333332 234689999997766666677777775431 3455788877
Q ss_pred C
Q 000983 316 T 316 (1199)
Q Consensus 316 ~ 316 (1199)
.
T Consensus 710 ~ 710 (854)
T 1qvr_A 710 L 710 (854)
T ss_dssp T
T ss_pred c
Confidence 4
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.20 E-value=0.035 Score=59.13 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=78.6
Q ss_pred CccccchhhHHHHHHHHhCCC--------CCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 171 ANVFGRDDDKERILHMLLSDE--------FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
.++.|.++.++++.+.+...- ..-..... +.++|++|+||||||+.++... .. ..+.+....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhh
Confidence 356677777766655432100 00011122 8999999999999999999732 21 2233332221110
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcCc-----------cChHHHHHhhhCCC--CCcE
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQGH--KGSR 309 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~~--~gs~ 309 (1199)
........+...+...-.....++++|+++.... .....+...+..+. ...-
T Consensus 84 ---------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 84 ---------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ---------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 0000001111112221134578999999953110 01122233333222 2344
Q ss_pred EEEecCCchhhhhh-----cCCCceeCCCCChhHHHHHHHHHh
Q 000983 310 VLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 310 iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
++.+|..+++.+.. ..+..+.+...+.++-.++|+...
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 55677766553321 234567888888888888888765
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.10 E-value=0.067 Score=60.25 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=34.1
Q ss_pred CccccchhhHHHHHHHHh----CCC--------------------CCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 171 ANVFGRDDDKERILHMLL----SDE--------------------FDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~----~~~--------------------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..++|.+..++.+...+. ... .........+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 347888888888776662 000 00011234577999999999999999997
No 250
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.07 E-value=0.034 Score=62.10 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=32.4
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..++|.+..+..+...+.... ..-+.|+|.+|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458898886665544443322 123779999999999999999973
No 251
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.85 E-value=0.043 Score=63.43 Aligned_cols=175 Identities=13% Similarity=0.123 Sum_probs=89.3
Q ss_pred CccccchhhHHHHHHHH---hCCCC-C--CCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000983 171 ANVFGRDDDKERILHML---LSDEF-D--EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L---~~~~~-~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1199)
.+++|.+..+.++.+.. ..... . .-.-.+-+.|+|++|+||||||++++... ... .+.+..+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~~---~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RVP---FITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCC---EEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEehhHHHH---
Confidence 56889887766665443 22110 0 00112238899999999999999999732 211 22333221110
Q ss_pred HHHHHHHhcccCCCCCCcHHHHHHHHHHHhC----CCeEEEEEecCCCcC----------ccCh----HHHHHhhhCC--
Q 000983 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLT----GQRFLLVLDDVWNED----------YRKW----EPLQQLLKQG-- 304 (1199)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~----~k~~LlVlDdvw~~~----------~~~~----~~l~~~l~~~-- 304 (1199)
. ........+...++ ....++++|++.... .+.+ ..+...+..+
T Consensus 103 -----------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 -----------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 00111122333332 234799999995321 0111 2233333322
Q ss_pred CCCcEEEEecCCchhhhh-----hcCCCceeCCCCChhHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHhcCCCh
Q 000983 305 HKGSRVLVTSRTARVSQI-----MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1199)
Q Consensus 305 ~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 377 (1199)
..+..|+.||..+++.+. ......+.+...+.++-.+++..++-...- . .... ...|++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~---~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-A---EDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-C---CSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-C---hHHH----HHHHHHhcCCCC
Confidence 234456667776654321 122346788888888888888766532211 1 1111 335677777765
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.64 E-value=0.03 Score=58.70 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=51.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHhcccCC---------CCCCcHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFHSKME---------QSTSSIS 264 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~ 264 (1199)
-.++.|+|.+|+||||||+.++....... .-..++|+.....++...+. .+++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 45899999999999999999986321211 12467888777655554433 2333332211 0111222
Q ss_pred H---HHHHHHHHhC-CCeEEEEEecCC
Q 000983 265 L---LETRLLEFLT-GQRFLLVLDDVW 287 (1199)
Q Consensus 265 ~---l~~~l~~~l~-~k~~LlVlDdvw 287 (1199)
. +...+.+.+. .+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 2223444443 467799999985
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.59 E-value=0.024 Score=62.35 Aligned_cols=84 Identities=19% Similarity=0.103 Sum_probs=52.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC-----CCCcHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1199)
.-.++.|.|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4569999999999999999999873 22222346788776666543 2333332211 1334555555555
Q ss_pred HHhC-CCeEEEEEecCC
Q 000983 272 EFLT-GQRFLLVLDDVW 287 (1199)
Q Consensus 272 ~~l~-~k~~LlVlDdvw 287 (1199)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 4443 445589999883
No 254
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.53 E-value=0.016 Score=53.58 Aligned_cols=54 Identities=28% Similarity=0.318 Sum_probs=43.7
Q ss_pred cEEecCCCCCc--ccCcccccCccccEEeccCCCccccch-hhcccCcccEEecCCCCc
Q 000983 594 RLLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIW 649 (1199)
Q Consensus 594 r~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~ 649 (1199)
.+++.++++++ .+|..+. .+|++|+|++|.|+.+|. .|..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888888888 8886554 468999999999998876 478888899999988764
No 255
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.52 E-value=0.16 Score=56.34 Aligned_cols=158 Identities=14% Similarity=-0.030 Sum_probs=99.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHH-HhCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTG 276 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~l~~ 276 (1199)
.++..++|..|.||++.|+.+.+... ...|+....+.+....+. ..+.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCcc
Confidence 55888999999999999999887321 223432211222222222 223222221 1346
Q ss_pred CeEEEEEecCCC-cCccChHHHHHhhhCCCCCcEEEEecCC-------chhhhhh-cCCCceeCCCCChhHHHHHHHHHh
Q 000983 277 QRFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRT-------ARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 277 k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
++-++|+|++.. .+...++.+...+.....++.+|++|.. ..+...+ .....++..+++.++....+...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999966 4445678888888766677877776543 2343333 233578899999999888887776
Q ss_pred cCCCCCCccccchhHHHHHHHHHHhcCCChHHHHHHH
Q 000983 348 FNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1199)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 384 (1199)
-..+- .-..+.+..+++.++|...++...-
T Consensus 156 ~~~g~-------~i~~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 156 KQLNL-------ELDDAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp HHTTC-------EECHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHcCC-------CCCHHHHHHHHHHhchHHHHHHHHH
Confidence 43321 1124667889999999988776543
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.34 E-value=0.033 Score=57.95 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=60.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC-------------------
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ------------------- 258 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------------- 258 (1199)
-.+++|+|.+|+|||||++.++.... ..=..++|+... .....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTE--ESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESS--SCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcc--cCHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 35899999999999999999985321 111234555443 23444433332 2221100
Q ss_pred ----CCCcHHHHHHHHHHHh---CCCeEEEEEecCCCc---CccChHHHHHhhhC--CCCCcEEEEecCCc
Q 000983 259 ----STSSISLLETRLLEFL---TGQRFLLVLDDVWNE---DYRKWEPLQQLLKQ--GHKGSRVLVTSRTA 317 (1199)
Q Consensus 259 ----~~~~~~~l~~~l~~~l---~~k~~LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 317 (1199)
...+..++...+.+.+ +-+..+||+|..-.. +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0114455555554443 233459999998521 22233444444432 13477888888765
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.32 E-value=0.066 Score=52.66 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 258
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.16 E-value=0.061 Score=57.18 Aligned_cols=81 Identities=7% Similarity=0.098 Sum_probs=51.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccc--cceeEEEEecCCCChHHHHHHHHHhcccCCCC-----CCcHHHH-HHHHH
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREH--FESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLL-ETRLL 271 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l-~~~l~ 271 (1199)
++-|.|.+|+||||||.+++.. .... =..++||+....++.. .+++++..... ..+.+++ ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888763 2222 2457899888777653 24555543221 3344544 33222
Q ss_pred HH--h-CCCeEEEEEecCC
Q 000983 272 EF--L-TGQRFLLVLDDVW 287 (1199)
Q Consensus 272 ~~--l-~~k~~LlVlDdvw 287 (1199)
.. + .++.-+||+|-|-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4567899999984
No 259
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.11 E-value=0.044 Score=60.76 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=52.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC-----CCCcHHHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLLE 272 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~~ 272 (1199)
..++.|.|.+|+||||||.+++... ...-..++|++....++.. .++.++.... ...+.+++...+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4588899999999999999988632 2222367899888766543 1333332211 12345566566655
Q ss_pred HhCC-CeEEEEEecCC
Q 000983 273 FLTG-QRFLLVLDDVW 287 (1199)
Q Consensus 273 ~l~~-k~~LlVlDdvw 287 (1199)
..+. +--+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 5543 34589999884
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.09 E-value=0.042 Score=60.66 Aligned_cols=84 Identities=17% Similarity=0.055 Sum_probs=51.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC-----CCCcHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1199)
.-.++.|.|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.+++...+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3458999999999999999999863 22222357888887766543 2333332211 1234455555454
Q ss_pred HHhC-CCeEEEEEecCC
Q 000983 272 EFLT-GQRFLLVLDDVW 287 (1199)
Q Consensus 272 ~~l~-~k~~LlVlDdvw 287 (1199)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 345689999884
No 261
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.99 E-value=0.093 Score=57.96 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=37.6
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHH
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILK 247 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~ 247 (1199)
..-.++.|+|.+|+||||||.+++....... .-..++|++....++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 3456999999999999999999886422211 224678998888777666543
No 262
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.91 E-value=0.036 Score=61.26 Aligned_cols=83 Identities=14% Similarity=0.054 Sum_probs=50.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC-----CCCcHHHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLLE 272 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~~ 272 (1199)
-+++.|.|.+|+||||||.+++... ...=..++|++....++... +..++.... ...+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4589999999999999999988632 22223678998877766432 233332211 12234444444443
Q ss_pred Hh-CCCeEEEEEecCC
Q 000983 273 FL-TGQRFLLVLDDVW 287 (1199)
Q Consensus 273 ~l-~~k~~LlVlDdvw 287 (1199)
.. ..+--+||+|.+-
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 33 2344589999883
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.91 E-value=0.054 Score=58.26 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=44.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC-CCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhC
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV-DYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~ 275 (1199)
...+++|+|.+|+||||++..++........ ..+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3569999999999999999999863221111 1334444322 1122222333333333222112233445444443 3
Q ss_pred CCeEEEEEecC
Q 000983 276 GQRFLLVLDDV 286 (1199)
Q Consensus 276 ~k~~LlVlDdv 286 (1199)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 33347788843
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.88 E-value=0.028 Score=56.86 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
|++.++.+.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566777777776542 23467999999999999999999986
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.73 E-value=0.066 Score=58.79 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=53.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhccccccc---------cc-----ceeEEEEecCCCChHHHHHHHHHhcccCC-----
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVRE---------HF-----ESRMWVCVTVDYDLPRILKGMIEFHSKME----- 257 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~~~~~~----- 257 (1199)
.-.++.|.|.+|+||||||.+++....... .. ..++|++....++..++... ++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 356999999999999999999886322211 11 46789988887777666533 33333211
Q ss_pred ----CCCCcHH---HHHHHHHHHhC--CCeEEEEEecC
Q 000983 258 ----QSTSSIS---LLETRLLEFLT--GQRFLLVLDDV 286 (1199)
Q Consensus 258 ----~~~~~~~---~l~~~l~~~l~--~k~~LlVlDdv 286 (1199)
....+.+ .+...+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23334444443 34558888887
No 266
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.63 E-value=0.072 Score=58.44 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=38.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccc----cceeEEEEecCCCChHHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREH----FESRMWVCVTVDYDLPRILKGMIEFH 253 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1199)
-.++.|+|.+|+||||||.+++........ -..++|++....++..++.. +++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 458999999999999999998864221111 24678998888777666543 34444
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.40 E-value=0.091 Score=56.89 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+++|+|.+|+|||||++.++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 448999999999999999998863
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.28 E-value=0.28 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999986
No 269
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.26 E-value=0.7 Score=64.10 Aligned_cols=138 Identities=16% Similarity=0.154 Sum_probs=73.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeE
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRF 279 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~ 279 (1199)
-+.++|++|+|||++|+.+... . ..+ ..+.+.++...+...+++.+...+.......... ..-.-.+|+.
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~~ 1338 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKNL 1338 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSCE
T ss_pred eEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCceE
Confidence 5679999999999999777652 1 122 2345677777666666555544332111000000 0000046789
Q ss_pred EEEEecCCCcCcc------ChHHHHHhhhCCC-----C-------CcEEEEecCCch------hhhh-hcCCCceeCCCC
Q 000983 280 LLVLDDVWNEDYR------KWEPLQQLLKQGH-----K-------GSRVLVTSRTAR------VSQI-MGIRSPYLLEYL 334 (1199)
Q Consensus 280 LlVlDdvw~~~~~------~~~~l~~~l~~~~-----~-------gs~iivTtR~~~------v~~~-~~~~~~~~l~~L 334 (1199)
++.+||+.-...+ ..+-+...+..++ . +..+|.+|-... +-.. ......+.+...
T Consensus 1339 VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P 1418 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYP 1418 (2695)
T ss_dssp EEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCC
T ss_pred EEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCC
Confidence 9999997433322 2345555554321 1 123444443221 1111 122245778888
Q ss_pred ChhHHHHHHHHHh
Q 000983 335 PEDQCWSIFKKIA 347 (1199)
Q Consensus 335 ~~~~~~~lf~~~a 347 (1199)
+.++-..+|....
T Consensus 1419 ~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1419 SGKSLSQIYEIYY 1431 (2695)
T ss_dssp TTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8877777777655
No 270
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.21 E-value=0.15 Score=55.10 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=31.9
Q ss_pred ccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|-...+..+...+.... ......+|+|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444445555554554432 245678999999999999999999875
No 271
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.16 E-value=0.088 Score=52.14 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=28.0
Q ss_pred HHHhccCCcccEEecCCCCCc-----ccCcccccCccccEEeccCCCcc-----ccchhhcccCcccEEecCC
Q 000983 584 DKIFHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIG 646 (1199)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~ 646 (1199)
...+..-+.|+.|+|++|.|. .+-+.+..-+.|+.|+|++|.|. .|-+.+..-+.|++|+|++
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 334444445555555555543 12233333444555555555443 2223333334455555543
No 272
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.11 E-value=0.018 Score=57.13 Aligned_cols=108 Identities=11% Similarity=-0.011 Sum_probs=51.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC--CCCcHHHHHHHHHHHhCC
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ--STSSISLLETRLLEFLTG 276 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~l~~~l~~ 276 (1199)
.++.|+|..|+||||++..++.....++ . .+.++....+. +.-...+....+.... ...+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 4788999999999999966665322121 1 23333322110 0000000000010000 011111 12233344
Q ss_pred CeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc
Q 000983 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 277 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1199)
+.-+|++|.+..-+. +|......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 567999999965432 354444433322 77899988754
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.02 E-value=0.37 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999986
No 274
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.99 E-value=0.063 Score=53.17 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=66.2
Q ss_pred hhhhHHHHhccCCcccEEecCCC-CCc-----ccCcccccCccccEEeccCCCcc-----ccchhhcccCcccEEecCCC
Q 000983 579 FGRALDKIFHQLKYLRLLDLSSS-TLT-----VLPDSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGC 647 (1199)
Q Consensus 579 ~~~~~~~~~~~l~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~ 647 (1199)
....+...+..-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.|. .|-+.+..-+.|++|+|++|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34456667777889999999985 665 34455677788999999999886 45566777788999999988
Q ss_pred Ccccc----cchhhccccccceeecccc
Q 000983 648 IWIME----LPKDLANLVKLRNLELEEM 671 (1199)
Q Consensus 648 ~~l~~----lp~~i~~L~~L~~L~l~~n 671 (1199)
.+... +-+.+..=+.|++|+|++|
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 75422 2333444456888887654
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.97 E-value=0.046 Score=63.27 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.++|++..++.+...+..+. -|.++|.+|+|||+||+++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 36899998888888876543 5779999999999999999983
No 276
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.88 E-value=0.043 Score=55.87 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=28.2
Q ss_pred hHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.++|.+.+... .....+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 23467999999999999999999986
No 277
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.83 E-value=0.084 Score=57.57 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccc-cccceeEEEEecCCCChHHHHHHHHHhccc----
Q 000983 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-EHFESRMWVCVTVDYDLPRILKGMIEFHSK---- 255 (1199)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~---- 255 (1199)
-++++.+..-. .-..++|+|..|+|||||++.+.+..... ..+.+ +++-+.+.. +++ .++.+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~--~Ev-~~~~~~~~~~vV~ 232 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP--EEV-TEMQRLVKGEVVA 232 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH--HHH-HHHHTTCSSEEEE
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh--HHH-HHHHHHhCeEEEE
Confidence 34556665443 34578999999999999999988732111 12333 345555443 222 223333311
Q ss_pred CCCCCCcHH---------HHHHHHHHHhCCCeEEEEEecC
Q 000983 256 MEQSTSSIS---------LLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 256 ~~~~~~~~~---------~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
...+..... ...+.+++ +++.+||++||+
T Consensus 233 atadep~~~r~~~a~~alt~AEyfrd--~G~dVLil~Dsl 270 (422)
T 3ice_A 233 STFDEPASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSI 270 (422)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCc
Confidence 001111111 12233333 589999999999
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.71 E-value=0.2 Score=53.88 Aligned_cols=43 Identities=37% Similarity=0.404 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhCCCCC--CCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 178 DDKERILHMLLSDEFD--EEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 178 ~~~~~l~~~L~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.-.+++.+.+.....- ......+|.|+|.+|+||||++..++.
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3445555555432210 124568999999999999999999987
No 279
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.60 E-value=0.042 Score=55.00 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+++|+|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999987
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.51 E-value=0.4 Score=54.03 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=22.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+..||.++|.+|+||||++.+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999998886
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.50 E-value=0.033 Score=55.05 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 282
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.45 E-value=0.28 Score=50.57 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=30.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccc---c-ccceeEEEEecCCCCh
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVR---E-HFESRMWVCVTVDYDL 242 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~ 242 (1199)
.-.+++|+|..|+|||||++.++...... . .-...+|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 35699999999999999999997521111 0 1234677766554443
No 283
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.39 E-value=0.07 Score=57.96 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=32.1
Q ss_pred ccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
|+.+.-.+++++.+...- .......|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 445556666776664322 123456788999999999999999987
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.39 E-value=0.037 Score=55.87 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|+|+.|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 285
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.38 E-value=0.038 Score=54.46 Aligned_cols=19 Identities=63% Similarity=0.992 Sum_probs=18.3
Q ss_pred EEEEEeCCCCcHHHHHHHH
Q 000983 200 VIPIIGMPGLGKTTLAQLL 218 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v 218 (1199)
+|.|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.35 E-value=0.035 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.108 Sum_probs=20.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.33 E-value=0.023 Score=59.89 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=54.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
-.+++|+|+.|.|||||++.+..- ....+...+++.-. ... .+.+.....+.. .....+...+...+...|..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~-~i~--~~~~~~~~~v~q-~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED-PIE--YVFKHKKSIVNQ-REVGEDTKSFADALRAALRED 98 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEES-SCC--SCCCCSSSEEEE-EEBTTTBSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCC-cce--eecCCcceeeeH-HHhCCCHHHHHHHHHHHHhhC
Confidence 569999999999999999998862 22111233333211 100 000000000000 000001122344555555556
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhh
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVS 320 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 320 (1199)
+=+|++|..- +......+.... ..|.-|++||-+..+.
T Consensus 99 p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 99 PDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 6688889984 222222222222 3466788888876543
No 288
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.26 E-value=0.2 Score=54.50 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=35.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHh
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1199)
..++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 458889999999999999999874322 1124555544 55667777766544
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.23 E-value=0.056 Score=57.92 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999886
No 290
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.16 E-value=0.11 Score=58.62 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=31.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHH
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMI 250 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~ 250 (1199)
.++|+|..|+|||||+..+....... .-+..+++-+.+..+ ..++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 58899999999999999998742221 223445555555432 334444443
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.14 E-value=0.046 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 292
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.12 E-value=0.24 Score=54.71 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=32.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhccccccccc----ceeEEEEecCCCChHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHF----ESRMWVCVTVDYDLPR 244 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~ 244 (1199)
.-.++.|+|.+|+|||||++.++......... ..++|++....+...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 46799999999999999999998632111111 2448888766554333
No 293
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.11 E-value=0.64 Score=56.76 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=79.6
Q ss_pred CCccccchhhHHHHHHHHhCCCC-------CCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000983 170 TANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1199)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1199)
...+.|.++.++++.+.+.-... ......+-|.++|++|.|||.+|+++++. .... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEec----c
Confidence 45677888888877665542210 01123445679999999999999999983 3322 23332 1
Q ss_pred HHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCeEEEEEecCCCcC----------ccC----hHHHHHhhhCCC--C
Q 000983 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRK----WEPLQQLLKQGH--K 306 (1199)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~----------~~~----~~~l~~~l~~~~--~ 306 (1199)
.++ +.. ....+...+.+.+...-+..+.+|++|+++.-- ... ..++...+.... .
T Consensus 545 ~~l----~s~-----~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 PEL----LTM-----WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HHH----HTT-----TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred chh----hcc-----ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 121 111 112333444444444445678999999995310 001 123333333222 2
Q ss_pred CcEEEEecCCchhh-----hhhcCCCceeCCCCChhHHHHHHHHHh
Q 000983 307 GSRVLVTSRTARVS-----QIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1199)
Q Consensus 307 gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1199)
+--||-||..++.. ..-..+..+.+...+.++-.++|+.+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 32334355543321 111234567777767777777776655
No 294
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.05 E-value=0.067 Score=59.08 Aligned_cols=113 Identities=10% Similarity=0.093 Sum_probs=61.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k 277 (1199)
..+++|+|+.|.|||||.+.+... +.......+ +++....... .......+. ..............+...|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~~~~v~-q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESKKCLVN-QREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCSSSEEE-EEEBTTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhcccccee-eeeeccccCCHHHHHHHHhhhC
Confidence 349999999999999999998762 221111222 2222221100 000000000 0000111123445788888888
Q ss_pred eEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhhh
Q 000983 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1199)
Q Consensus 278 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1199)
+=+|++|.+-+ .+.++.+.... ..|.-||+||-....+.
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 88999999953 33444444433 23666899988766553
No 295
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.95 E-value=0.5 Score=51.33 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=36.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHh
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1199)
-.++.|.|.+|+||||+|..++.+...++ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 45888999999999999999886432222 456777654 5566776666544
No 296
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.95 E-value=0.07 Score=59.73 Aligned_cols=50 Identities=28% Similarity=0.301 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHhC-------CC--CCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 172 NVFGRDDDKERILHMLLS-------DE--FDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.++|.+..++.+...+.. .. .........+.++|++|+|||++|+++++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 468998888888777720 00 000123456789999999999999999973
No 297
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.94 E-value=0.28 Score=54.90 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=35.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1199)
-.++.|+|.+|+|||||+..++-...... .-..++|+.....++..++. .+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 45899999999999999997653111111 22457888877666554443 3444443
No 298
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.93 E-value=0.31 Score=53.13 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-++++.+..-. +-.-++|+|.+|+|||+|+.++.+.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 46677776543 3446789999999999999999873
No 299
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.93 E-value=0.053 Score=57.13 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.93 E-value=0.061 Score=54.27 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=21.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|+|+|+.|.||||+|+.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.86 E-value=0.072 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 302
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.82 E-value=0.11 Score=47.97 Aligned_cols=54 Identities=28% Similarity=0.393 Sum_probs=44.0
Q ss_pred cEEeccCCCcc--ccchhhcccCcccEEecCCCCcccccch-hhccccccceeecccccc
Q 000983 617 RYLDLSRTEIK--VLPNSICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFW 673 (1199)
Q Consensus 617 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~n~~ 673 (1199)
..++.+++.++ .+|..+. .+|++|+|++|. +..+|. .|..+++|+.|+|.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 47889999998 8887543 479999999998 556665 467899999999999865
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.81 E-value=0.42 Score=54.19 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=30.3
Q ss_pred hHHHHHHHHhCCCC---CCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 179 DKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 179 ~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+++.+++..... ....+.++|.|+|.+|+||||+|..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34566666653321 01245789999999999999999999863
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.77 E-value=0.53 Score=53.05 Aligned_cols=25 Identities=40% Similarity=0.475 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999863
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.74 E-value=0.047 Score=53.63 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|+|+|+.|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 306
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.72 E-value=0.05 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+.|.|+|+.|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.70 E-value=0.071 Score=53.38 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 308
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.69 E-value=0.22 Score=56.16 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..+|.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998863
No 309
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.58 E-value=0.057 Score=53.43 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 310
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.48 E-value=0.065 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.45 E-value=0.063 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|+|+.|+|||||++.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.40 E-value=0.055 Score=54.77 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.35 E-value=0.077 Score=53.65 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.6
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.34 E-value=0.06 Score=52.53 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=20.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|+|.|+.|+||||+|+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.31 E-value=0.084 Score=53.61 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=22.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|+|+|+.|.||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 316
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.30 E-value=0.074 Score=57.66 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=28.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecC
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1199)
.+.+||+|.|-|||||||.|-.++. .....=..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 4578999999999999999887765 2222222455566553
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.22 E-value=0.078 Score=52.64 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.21 E-value=0.13 Score=55.04 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.++++..+.... .......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~-~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGK-KAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTC-CCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhccc-cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444332 1234467899999999999999999986
No 319
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.20 E-value=0.32 Score=55.05 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=59.2
Q ss_pred HHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHhcccC-----
Q 000983 183 ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEFHSKM----- 256 (1199)
Q Consensus 183 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~----- 256 (1199)
+++.|..-. +-.-++|.|..|+|||+|+..+.+.. .+.+-+.++++-+.+... ..++.+++.+.-...
T Consensus 155 vID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~ 228 (498)
T 1fx0_B 155 VVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIA 228 (498)
T ss_dssp THHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTC
T ss_pred Eeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhccccccccccc
Confidence 456665443 34467899999999999999998731 123446778887877653 456666665431111
Q ss_pred --CC------CCCc------HHHHHHHHHHHhC---CCeEEEEEecC
Q 000983 257 --EQ------STSS------ISLLETRLLEFLT---GQRFLLVLDDV 286 (1199)
Q Consensus 257 --~~------~~~~------~~~l~~~l~~~l~---~k~~LlVlDdv 286 (1199)
.. .... .....-.+.++++ ++.+||++||+
T Consensus 229 ~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 229 ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 00 0111 1122233445554 58999999999
No 320
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.20 E-value=0.077 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 321
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.11 E-value=0.086 Score=53.33 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|.|.|+.|+||||+|+.+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.10 E-value=0.072 Score=52.69 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.++|.|+|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 323
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.08 E-value=0.087 Score=53.68 Aligned_cols=24 Identities=54% Similarity=0.599 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999986
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.07 E-value=0.071 Score=53.29 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.04 E-value=0.077 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.03 E-value=0.083 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997654
No 327
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.00 E-value=0.084 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 328
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.97 E-value=0.4 Score=49.60 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=45.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccc-ccccc-ceeEEEEecCCCChHHHHHHHHHhcccCCC---------------C---
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEER-VREHF-ESRMWVCVTVDYDLPRILKGMIEFHSKMEQ---------------S--- 259 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------------~--- 259 (1199)
.+.|+|..|.||||+.....-+.. ..... ...+.+..........+.+.+....+.... .
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHAS 157 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSE
T ss_pred EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCe
Confidence 788999999999987655543211 11112 223333333332333444444433322100 0
Q ss_pred --CCcHHHHHHHHHHHhCCCeEEEEEecCCC
Q 000983 260 --TSSISLLETRLLEFLTGQRFLLVLDDVWN 288 (1199)
Q Consensus 260 --~~~~~~l~~~l~~~l~~k~~LlVlDdvw~ 288 (1199)
..+...+.+.+...+.+- -+||+|.++.
T Consensus 158 Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 158 IMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 123455556665544443 3789999964
No 329
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.96 E-value=0.078 Score=55.73 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 330
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.92 E-value=0.083 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 331
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.90 E-value=0.12 Score=54.42 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+.++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334445555554432 334567899999999999999999986
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.90 E-value=0.083 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 333
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.89 E-value=0.079 Score=53.67 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 789999999999999999986
No 334
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.89 E-value=0.1 Score=51.92 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...+|.|.|++|+||||+|+.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 335
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.88 E-value=0.2 Score=55.90 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=56.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeE-EEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRM-WVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~ 276 (1199)
..+++|+|..|.||||+++.+... +.......+ ++. ..... ..+.-...+. ......+...+...+...|..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e--~~~e~--~~~~~~~~v~-Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE--DPIEY--VFKHKKSIVN-QREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE--SSCCS--CCCCSSSEEE-EEEBTTTBSCSHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec--ccHhh--hhccCceEEE-eeecCCCHHHHHHHHHHHhhh
Confidence 568999999999999999999862 221112223 222 11110 0000000000 000000112234556666766
Q ss_pred CeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchhh
Q 000983 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVS 320 (1199)
Q Consensus 277 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 320 (1199)
..=+|++|.+-+ . +.+..++.....|..|+.|+-...+.
T Consensus 209 ~pd~illdE~~d--~---e~~~~~l~~~~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 209 DPDVIFVGEMRD--L---ETVETALRAAETGHLVFGTLHTNTAI 247 (372)
T ss_dssp CCSEEEESCCCS--H---HHHHHHHHHHTTTCEEEECCCCCSHH
T ss_pred CcCEEEECCCCC--H---HHHHHHHHHHhcCCEEEEEECcchHH
Confidence 777899999942 2 22323332223566788888765543
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.85 E-value=0.077 Score=53.70 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 337
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.79 E-value=0.66 Score=52.28 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=42.4
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHh
Q 000983 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEF 252 (1199)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~ 252 (1199)
++++.|..-. +-.-++|.|..|+|||+|+..+.+.. .+.+-+.++++-+.+... +.++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566665432 34468999999999999999998732 123335567777776543 45566666543
No 338
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.78 E-value=0.069 Score=52.54 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|.|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.75 E-value=0.083 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 366999999999999999999987
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.75 E-value=0.093 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.74 E-value=0.09 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 342
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.74 E-value=0.76 Score=52.98 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCC---CCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 180 KERILHMLLSDEFD---EEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++.+.+...... ...+.++|+|+|.+|+||||++.+++.
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555655443211 124578999999999999999999986
No 343
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.74 E-value=0.069 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 355889999999999999999986
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.61 E-value=0.12 Score=52.49 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.9
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+.+||.|.|++|+||||.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 345
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.60 E-value=0.41 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999873
No 346
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.59 E-value=0.095 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 347
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.58 E-value=0.48 Score=51.49 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+..+++|+|..|+||||+++.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.54 E-value=0.12 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 349
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.53 E-value=0.49 Score=50.68 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+++++|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999986
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.51 E-value=0.067 Score=53.15 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 351
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.48 E-value=0.25 Score=49.39 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|+|=|..|+||||.++.+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999999987
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.48 E-value=0.1 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|++|+||||+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 353
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.45 E-value=0.4 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.45 E-value=0.1 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999986
No 355
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.40 E-value=0.076 Score=52.84 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 356
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.38 E-value=0.16 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999874
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.37 E-value=0.11 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 358
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.31 E-value=0.22 Score=55.79 Aligned_cols=87 Identities=14% Similarity=0.297 Sum_probs=49.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhccccccc-ccc-eeEEEEecCCC-ChHHHHHHHHHhcccC-------CCCCCcHH-----
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVRE-HFE-SRMWVCVTVDY-DLPRILKGMIEFHSKM-------EQSTSSIS----- 264 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~~~~~~----- 264 (1199)
-++|.|..|+|||+|+.++++...... +=+ .++++-+.+.. .+.++.+++.+.-... ..+.....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 468999999999999999998543311 111 45566666543 3455555554321000 01111111
Q ss_pred HHHHHHHHHh---CCCeEEEEEecC
Q 000983 265 LLETRLLEFL---TGQRFLLVLDDV 286 (1199)
Q Consensus 265 ~l~~~l~~~l---~~k~~LlVlDdv 286 (1199)
...-.+.+++ +++.+||++||+
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1122334444 378999999999
No 359
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.31 E-value=0.077 Score=52.33 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|.|+|+.|+|||||++++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999876
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.30 E-value=0.094 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 361
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.28 E-value=0.099 Score=54.77 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|+|+.|+|||||++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 362
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.23 E-value=0.1 Score=51.94 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 363
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.20 E-value=0.1 Score=52.49 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 364
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.17 E-value=0.56 Score=53.42 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=29.7
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD 241 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 241 (1199)
....+++|+|..|+|||||++.++.. .+. -...+++.....+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 34679999999999999999999863 221 23445554444444
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.13 E-value=0.081 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.10 E-value=0.12 Score=55.87 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3467999999999999999999986
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.08 E-value=0.11 Score=50.70 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 368
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.02 E-value=0.28 Score=56.68 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..++.+...+.... ..+.|.|.+|+||||++.++...
T Consensus 32 ~av~~~~~~i~~~~-------~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 32 NAFNIVMKAIKEKK-------HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHSSS-------CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-------CEEEEEeCCCCCHHHHHHHHHHH
Confidence 34455555554432 27889999999999999998873
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.01 E-value=0.11 Score=53.44 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...|.|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.99 E-value=0.12 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+..+++|+|.+|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999986
No 371
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.91 E-value=1.7 Score=60.88 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=48.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHh-CCCe
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQR 278 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l-~~k~ 278 (1199)
-|.++|++|+|||++++.+.. +..+ + ..+.+.++...+...++..+-............. +..-. .+|+
T Consensus 1306 pvLL~GptGtGKT~li~~~L~--~l~~-~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~------~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLR--AFPD-F-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET------VLRPTQLGKW 1375 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGG--GCTT-E-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE------EEEESSTTCE
T ss_pred cEEEECCCCCCHHHHHHHHHH--hCCC-C-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc------ccCCCcCCce
Confidence 356899999999998877665 2222 2 2357778887777777766644332111000000 00001 2788
Q ss_pred EEEEEecCCCcCc
Q 000983 279 FLLVLDDVWNEDY 291 (1199)
Q Consensus 279 ~LlVlDdvw~~~~ 291 (1199)
.++++||+.-...
T Consensus 1376 ~VlFiDDiNmp~~ 1388 (3245)
T 3vkg_A 1376 LVVFCDEINLPST 1388 (3245)
T ss_dssp EEEEETTTTCCCC
T ss_pred EEEEecccCCCCc
Confidence 9999999954443
No 372
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.90 E-value=0.14 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999876
No 373
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.89 E-value=0.074 Score=52.70 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=16.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 374
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.84 E-value=0.15 Score=48.83 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999986
No 375
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.83 E-value=0.095 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 376
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.79 E-value=0.17 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|.|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 377
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.77 E-value=0.14 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=21.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999986
No 378
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.76 E-value=0.12 Score=51.81 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 379
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.74 E-value=0.13 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.66 E-value=0.17 Score=51.83 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555555332 3779999999999999999998863
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.63 E-value=0.15 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999973
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.62 E-value=0.13 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 383
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.54 E-value=0.24 Score=55.41 Aligned_cols=88 Identities=16% Similarity=0.291 Sum_probs=49.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccc--------cccc-eeEEEEecCCC-ChHHHHHHHHHhcccC-------CCCCC
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVR--------EHFE-SRMWVCVTVDY-DLPRILKGMIEFHSKM-------EQSTS 261 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~~~ 261 (1199)
.-++|.|..|+|||+|+.++++..... ++=+ .++++-+.+.. .+.++.+++.+.-... ..+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 356799999999999999999854431 1111 45566666544 3445555544321000 01111
Q ss_pred cHHH-----HHHHHHHHh---CCCeEEEEEecC
Q 000983 262 SISL-----LETRLLEFL---TGQRFLLVLDDV 286 (1199)
Q Consensus 262 ~~~~-----l~~~l~~~l---~~k~~LlVlDdv 286 (1199)
.... ..-.+.+++ +++.+||++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 122334444 378999999999
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.53 E-value=0.15 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999987
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.49 E-value=0.13 Score=53.89 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.48 E-value=0.12 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...|.|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 387
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.46 E-value=0.14 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 44899999999999999999986
No 388
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.33 E-value=0.25 Score=49.42 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 389
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.23 E-value=0.32 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 390
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.15 E-value=0.19 Score=49.64 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+..+..++..- ++...+.|+|++|+||||+|.++++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55566666432 22346889999999999999999873
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.07 E-value=0.42 Score=52.21 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=53.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHhCCCe
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~~k~ 278 (1199)
.+++|+|..|.|||||++.+..- +. .-...+.+.-......... -+.+..... .-......+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~~----~~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKHH----KNYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSSC----SSEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeeccccccc----hhEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 38899999999999999999873 21 1233444432221110000 000000000 11223345666677777
Q ss_pred EEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCchh
Q 000983 279 FLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV 319 (1199)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 319 (1199)
=+|++|++-.. +.++.+ ..+..+ +.-+|+||....+
T Consensus 242 ~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccHH
Confidence 88999999542 333333 333322 2225666665443
No 392
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.05 E-value=0.13 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34899999999999999999986
No 393
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.04 E-value=0.17 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 394
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.03 E-value=0.27 Score=55.58 Aligned_cols=50 Identities=28% Similarity=0.394 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhCC--------CCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 171 ANVFGRDDDKERILHMLLSD--------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..++|.+..++.+...+... ........+-|.++|++|+||||+|++++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45789888888886665321 000111234578999999999999999997
No 395
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.99 E-value=0.33 Score=64.76 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=52.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC-----CCCcHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1199)
..++|-|+|++|+|||+||.++.... ...=..++|+++...++... ++..+.... .....+...+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 35688999999999999999998732 22223567888887776555 233331110 1223344444444
Q ss_pred HHh-CCCeEEEEEecCC
Q 000983 272 EFL-TGQRFLLVLDDVW 287 (1199)
Q Consensus 272 ~~l-~~k~~LlVlDdvw 287 (1199)
+.. ..+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 443 2556699999993
No 396
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.97 E-value=0.19 Score=50.65 Aligned_cols=21 Identities=33% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+++|+|..|.|||||++.++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999985
No 397
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.94 E-value=0.16 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 398
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.92 E-value=0.14 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.92 E-value=0.18 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.90 E-value=0.18 Score=54.33 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356999999999999999999986
No 401
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.86 E-value=0.29 Score=54.35 Aligned_cols=37 Identities=35% Similarity=0.540 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+++..+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 445555554332 4578999999999999999999875
No 402
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.84 E-value=0.61 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999873
No 403
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.79 E-value=0.14 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998863
No 404
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.74 E-value=0.72 Score=53.99 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=35.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHh
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1199)
.-.++.|.|.+|+||||+|.+++.+.... +=..++|++. ..+..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~--E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML--EESVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES--SSCHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec--cCCHHHHHHHHHHH
Confidence 34588899999999999999998743222 1124566655 34566777666543
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.69 E-value=0.16 Score=51.86 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 406
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.67 E-value=0.17 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999986
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.57 E-value=0.2 Score=60.21 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..++|.+..++.+...+..+. .+.|+|.+|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~--------~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR--------HVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC--------CEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCCC--------EEEEEeCCCCCHHHHHHHHhc
Confidence 468899888888877776543 788999999999999999987
No 408
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.54 E-value=0.21 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 409
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.51 E-value=0.096 Score=53.47 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 410
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.49 E-value=0.17 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 411
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.49 E-value=0.14 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 412
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.19 E-value=0.13 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 413
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.15 E-value=0.35 Score=52.48 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD 241 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 241 (1199)
...++|+|+|-||+||||+|..++.. ....=..++-|......+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCCC
Confidence 45789999999999999999988863 222222456666654433
No 414
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.09 E-value=0.19 Score=50.89 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|+|.|+.|+||||+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 415
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.06 E-value=0.2 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 416
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.01 E-value=0.2 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.00 E-value=0.2 Score=51.29 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999985
No 418
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.90 E-value=0.17 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..|.|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 419
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.90 E-value=0.2 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..+|+|.|++|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 420
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.89 E-value=0.36 Score=54.41 Aligned_cols=99 Identities=12% Similarity=0.194 Sum_probs=55.1
Q ss_pred HHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccc--cceeEEEEecCCC-ChHHHHHHHHHhcccCC--
Q 000983 183 ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH--FESRMWVCVTVDY-DLPRILKGMIEFHSKME-- 257 (1199)
Q Consensus 183 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-- 257 (1199)
+++.|..-. +-.-++|.|..|+|||+|+.+++++....+. =+.++++-+.+.. .+.++.+++.+.-....
T Consensus 142 ~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtv 216 (469)
T 2c61_A 142 TIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAV 216 (469)
T ss_dssp HHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEE
T ss_pred eeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceE
Confidence 455555432 2335678999999999999999986443221 1345666666554 34555555554311110
Q ss_pred -----CCCCcHH-----HHHHHHHHHh---CCCeEEEEEecC
Q 000983 258 -----QSTSSIS-----LLETRLLEFL---TGQRFLLVLDDV 286 (1199)
Q Consensus 258 -----~~~~~~~-----~l~~~l~~~l---~~k~~LlVlDdv 286 (1199)
.+..... ...-.+.+++ +++.+||++||+
T Consensus 217 vV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 217 VFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0111111 1112233343 479999999997
No 421
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.89 E-value=0.95 Score=52.07 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=33.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1199)
-.++.|.|.+|+||||+|..++....... =..++|++.. .+..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 45889999999999999999987432211 1245666543 34556655554
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.76 E-value=0.32 Score=48.40 Aligned_cols=26 Identities=35% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457889999999999999999874
No 423
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.75 E-value=0.24 Score=54.49 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=22.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999999987
No 424
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.71 E-value=0.21 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999999998873
No 425
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.62 E-value=0.39 Score=56.86 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+++.|.|.+|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999999886
No 426
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.58 E-value=0.22 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|+.|.|||||.+.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34899999999999999999985
No 427
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.56 E-value=0.22 Score=50.68 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 428
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.48 E-value=0.31 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567999999999999999999985
No 429
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.46 E-value=1.2 Score=51.15 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=34.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
..++.|.|.+|+||||+|..++...... .=..++|++.. .+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHH
Confidence 4588899999999999999998743221 11245666553 456667666654
No 430
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.45 E-value=0.23 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.39 E-value=0.23 Score=51.03 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 432
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.37 E-value=1.1 Score=51.39 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHH
Q 000983 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKG 248 (1199)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~ 248 (1199)
++++.|..-. +-.-++|.|..|+|||+|+.++++.. +-+.++++-+.+.. .+.+++++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4567775543 34478999999999999999998742 23566777777653 23344443
No 433
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.31 E-value=0.26 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45889999999999999999986
No 434
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.30 E-value=0.24 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.29 E-value=0.25 Score=51.22 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4466899999999999999999986
No 436
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.29 E-value=0.17 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=16.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHh-c
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLF-N 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~-~ 220 (1199)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.21 E-value=0.24 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...|.|.|++|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999999987
No 438
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.20 E-value=0.24 Score=49.79 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999986
No 439
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.05 E-value=0.38 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=18.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...|.|.|+.|+||||+++.+++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999873
No 440
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.00 E-value=0.62 Score=52.82 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=53.2
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHH-HHHhcccccccccce-eEEEEecCCCC-hHHHHHHHHHhcccC--
Q 000983 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERVREHFES-RMWVCVTVDYD-LPRILKGMIEFHSKM-- 256 (1199)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~~~~~-- 256 (1199)
++++.|..-. +-.-++|.|..|+|||+|| ..+.+.. .-+. ++++-+.+..+ +.++.+.+.+.-...
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 3456665432 2346789999999999995 5787742 2343 46666766543 445555554321110
Q ss_pred -----CCCCCcHH---------HHHHHHHHHhCCCeEEEEEecC
Q 000983 257 -----EQSTSSIS---------LLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 257 -----~~~~~~~~---------~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
..+..... .+.+.++. +++.+||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 01111111 12233433 589999999999
No 441
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.00 E-value=1 Score=51.47 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=40.2
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHH
Q 000983 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGM 249 (1199)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 249 (1199)
++++.|..-. +-.-++|.|..|+|||+|+.++++.. +-+.++++-+.+..+ +.++.+++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665432 34467999999999999999998732 234677777877665 34455544
No 442
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.99 E-value=0.25 Score=52.30 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|+.|.|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999985
No 443
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.96 E-value=0.25 Score=52.01 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999986
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.91 E-value=0.41 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
....|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999873
No 445
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.87 E-value=0.71 Score=52.34 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=53.2
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHH-HHHhcccccccccce-eEEEEecCCCC-hHHHHHHHHHhcccCC-
Q 000983 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERVREHFES-RMWVCVTVDYD-LPRILKGMIEFHSKME- 257 (1199)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~~~~~~- 257 (1199)
++++.|..-. +-.-++|.|..|+|||+|| ..+.+.. .-+. ++++-+.+..+ +.++.+++.+.-....
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 3456665433 2345789999999999995 5777732 2342 36666766543 4455555544211110
Q ss_pred ------CCCCcHH---------HHHHHHHHHhCCCeEEEEEecC
Q 000983 258 ------QSTSSIS---------LLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 258 ------~~~~~~~---------~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
.+..... .+.+.++. +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 0111111 22333433 589999999999
No 446
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.74 E-value=0.27 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 447
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.72 E-value=0.23 Score=50.34 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4889999999999999999986
No 448
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.71 E-value=0.26 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 34899999999999999999986
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.71 E-value=0.33 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.245 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
..++|.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999986
No 450
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.62 E-value=1 Score=50.53 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 195 EDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45688999999999999999999875
No 451
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.60 E-value=0.31 Score=55.28 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=29.2
Q ss_pred hHHHHHHHHhCCC--C-CCCCCcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 179 DKERILHMLLSDE--F-DEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 179 ~~~~l~~~L~~~~--~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..+++.+++.... . .......+|.|+|.+|+||||+|.+++..
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455566664331 1 01134579999999999999999998873
No 452
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.57 E-value=0.27 Score=51.57 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999986
No 453
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.54 E-value=0.27 Score=51.77 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||++.++-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34899999999999999999986
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.54 E-value=0.34 Score=48.26 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 455
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.51 E-value=0.33 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 456
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.48 E-value=2.1 Score=48.72 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=33.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1199)
..++.|.|.+|+||||+|.+++.+...+ =..++|++.. -+..++...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHH
Confidence 4588899999999999999998743222 1245565444 445556555544
No 457
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.46 E-value=0.29 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 458
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.36 E-value=0.32 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|+|.|..|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999986
No 459
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.33 E-value=0.29 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999986
No 460
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.30 E-value=0.62 Score=61.43 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=52.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCC-----CCCCcHHHHHHHHHH
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME-----QSTSSISLLETRLLE 272 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l~~~l~~ 272 (1199)
-.++.|.|.+|+||||||.+++... ...=..++|++........ . ++.++... ....+.+++...+++
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~a--a~~g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHH--HHcCCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 4589999999999999999998743 2222356777776665432 1 34443211 113355566666654
Q ss_pred HhC-CCeEEEEEecCCC
Q 000983 273 FLT-GQRFLLVLDDVWN 288 (1199)
Q Consensus 273 ~l~-~k~~LlVlDdvw~ 288 (1199)
..+ .+.-+||+|.+..
T Consensus 805 lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHccCCCEEEEechhh
Confidence 332 4556999999853
No 461
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.29 E-value=2.3 Score=52.34 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHh
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLF 219 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 219 (1199)
.+.+...+... .++.|+|..|.||||++..+.
T Consensus 99 ~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 99 RDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp HHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHH
Confidence 44555555443 378899999999999666554
No 462
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.27 E-value=0.29 Score=50.92 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||++.++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 463
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.26 E-value=0.15 Score=54.60 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=18.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 464
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.25 E-value=0.81 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+-|+|-|..|+||||+++.+++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999999873
No 465
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.17 E-value=0.3 Score=51.51 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||++.++-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999986
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.17 E-value=0.37 Score=46.56 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 467
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.12 E-value=0.3 Score=52.84 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 468
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.02 E-value=0.31 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.464 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 469
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.84 E-value=0.32 Score=51.46 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||++.++-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999986
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.83 E-value=0.5 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=21.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+++|+|++|.|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999986
No 471
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.82 E-value=0.31 Score=48.20 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcc
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999873
No 472
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.77 E-value=0.32 Score=55.22 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
....+|.|+|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 473
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.74 E-value=0.34 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.++-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999986
No 474
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=86.66 E-value=0.37 Score=47.74 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=53.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC--CCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ--STSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~l~~~l~ 275 (1199)
-++..++|..|.||||.+..+.+....+ ... ++.+....+ .+.-...+...++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~k-V~v~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA-KQK-IQVFKPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-TCC-EEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCE-EEEEEeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 4689999999999999998887743212 222 222322211 01000111222221100 011111 2333344
Q ss_pred CCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCc
Q 000983 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1199)
++-=+|++|.+..-+.+..+.+....+ .|..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 433389999885433333444433333 267899998865
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.62 E-value=0.33 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|..|.|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999986
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.59 E-value=0.33 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 477
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.58 E-value=0.33 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.686 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 478
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=86.53 E-value=1.5 Score=49.66 Aligned_cols=93 Identities=18% Similarity=0.294 Sum_probs=53.5
Q ss_pred HHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHH-HHHhcccccccccc-eeEEEEecCCCC-hHHHHHHHHHhcccCC--
Q 000983 183 ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERVREHFE-SRMWVCVTVDYD-LPRILKGMIEFHSKME-- 257 (1199)
Q Consensus 183 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~~~-- 257 (1199)
.++.|..-. +-.-++|.|..|+|||+|| ..+.+. + +-+ .++++-+.+..+ +.++.+++.+.-....
T Consensus 152 aID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~---~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tv 222 (513)
T 3oaa_A 152 AVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ---R-DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTI 222 (513)
T ss_dssp HHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT---S-SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEE
T ss_pred eeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh---c-cCCceEEEEEecCChHHHHHHHHHHhhcCcccceE
Confidence 456665443 2335789999999999996 577763 1 223 346777776643 4555555443211110
Q ss_pred ----CCCCc-H---------HHHHHHHHHHhCCCeEEEEEecC
Q 000983 258 ----QSTSS-I---------SLLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 258 ----~~~~~-~---------~~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
...+. . -.+.+.+++ +++..||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 223 VVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 00111 1 123344443 689999999999
No 479
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=86.51 E-value=0.73 Score=52.29 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=47.4
Q ss_pred EEEEEEeCCCCcHHHHH-HHHhcccccccccc-eeEEEEecCCCC-hHHHHHHHHHhccc--------CCCC----CC--
Q 000983 199 FVIPIIGMPGLGKTTLA-QLLFNEERVREHFE-SRMWVCVTVDYD-LPRILKGMIEFHSK--------MEQS----TS-- 261 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~--------~~~~----~~-- 261 (1199)
.-++|.|..|+|||+|| ..+.+.. . -+ .++++-+.+..+ +.++.+.+.+.-.. ..+. ..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45689999999999995 5887742 2 34 346666666543 33444444331100 0000 01
Q ss_pred --cHHHHHHHHHHHhCCCeEEEEEecC
Q 000983 262 --SISLLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 262 --~~~~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
..-.+.+.++. +++.+||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 11223444544 689999999998
No 480
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.39 E-value=0.43 Score=49.71 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=26.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEec
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT 237 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 237 (1199)
-.++.|.|.+|+||||||.+++... ...=..++|++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcc
Confidence 4489999999999999998887532 1222355666644
No 481
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.36 E-value=0.35 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 45899999999999999999986
No 482
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.36 E-value=0.61 Score=49.37 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=27.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1199)
++|+|.|-||+||||+|..++.. ....=..+.-|.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCC
Confidence 57888999999999999988863 2222224556665543
No 483
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.24 E-value=0.56 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
-.+++|.|..|+|||||++.++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 484
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=86.24 E-value=2.7 Score=43.30 Aligned_cols=100 Identities=20% Similarity=0.126 Sum_probs=51.5
Q ss_pred EEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcc---cC-C-------C---C--CCcHH
Q 000983 201 IPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHS---KM-E-------Q---S--TSSIS 264 (1199)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~---~~-~-------~---~--~~~~~ 264 (1199)
+.|+|..|.|||.+|..+.... . ..++++ +... .+..++.+.+. .. . . . ..+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv-~P~~----~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIV-VPTL----ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEE-ESSH----HHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEE-eCCH----HHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 6689999999999998887632 1 123333 3221 23333332221 11 0 0 0 11223
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEec
Q 000983 265 LLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS 314 (1199)
Q Consensus 265 ~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt 314 (1199)
.+..... .+..+--+||+|++.......+..+...++ ...++.+|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333332 334445699999997655456666655443 233455453
No 485
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.22 E-value=1 Score=45.00 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=52.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC--CCCcHHHHHHHHHHHhC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ--STSSISLLETRLLEFLT 275 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~l~~~l~ 275 (1199)
-.+..++|.-|.||||.|...+... ...-..++.+....+ .+.-...+...++.... ...+.. .+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT--QFAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 4688899999999999998887633 222223333332221 11111123333322111 011111 2223333
Q ss_pred CCeEEEEEecCCCcCccChHHHHHhhhCCCCCcEEEEecCCch
Q 000983 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1199)
Q Consensus 276 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1199)
++--+|++|.+-.-+.+..+.+....+ .|-.||+|-++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 333399999995543333433333222 3678999999654
No 486
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.22 E-value=0.63 Score=49.90 Aligned_cols=40 Identities=28% Similarity=0.226 Sum_probs=27.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCC
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1199)
.++|+|.|-||+||||+|..++.. ....=..+.-|.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 468889999999999999988863 2222124455665543
No 487
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.15 E-value=0.38 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-+.|.|.|..|+||||||.++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 488
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.03 E-value=0.43 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...|.|.|..|+||||+++.++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 489
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.96 E-value=0.68 Score=48.10 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhc
Q 000983 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
...+..|+.... .+...|.++|++|.|||.+|.++++
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344666665431 2345688999999999999999997
No 490
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.88 E-value=0.4 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
-.++.|+|.+|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34899999999999999999885
No 491
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.88 E-value=0.37 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 492
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.82 E-value=0.44 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhcc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 493
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=85.76 E-value=0.9 Score=51.62 Aligned_cols=98 Identities=18% Similarity=0.290 Sum_probs=54.2
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHH-HHHhccccc----ccccc-eeEEEEecCCCC-hHHHHHHHHHhcc
Q 000983 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERV----REHFE-SRMWVCVTVDYD-LPRILKGMIEFHS 254 (1199)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~ 254 (1199)
++++.|..-. +-.-++|.|..|+|||+|| ..+.+.... ..+-+ .++++-+.+..+ +.++.+.+.+.-.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 3566665543 2345789999999999994 567763221 01234 356777776543 4455555544211
Q ss_pred cC-------CCCCCcHH---------HHHHHHHHHhCCCeEEEEEecC
Q 000983 255 KM-------EQSTSSIS---------LLETRLLEFLTGQRFLLVLDDV 286 (1199)
Q Consensus 255 ~~-------~~~~~~~~---------~l~~~l~~~l~~k~~LlVlDdv 286 (1199)
.. ..+..... .+.+.++. +++.+||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCH
Confidence 10 00111111 12233433 589999999999
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.68 E-value=0.57 Score=46.25 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 495
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.59 E-value=0.91 Score=45.77 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=54.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCC-----C-C-CCcHHHHHHHHHH
Q 000983 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME-----Q-S-TSSISLLETRLLE 272 (1199)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~-~-~~~~~~l~~~l~~ 272 (1199)
.|.+.|.||+||||+|..++... ....++ +.++.+...-+... ...+..+.... . . ......+...+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L-- 81 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDALL-- 81 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHHH--
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHHH--
Confidence 46789999999999998888732 222333 34444443322221 11222222110 0 0 00101122222
Q ss_pred HhCCCeEEEEEecCCCcC------ccChHHHHHhhhCCCCCcEEEEecCCc
Q 000983 273 FLTGQRFLLVLDDVWNED------YRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1199)
Q Consensus 273 ~l~~k~~LlVlDdvw~~~------~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1199)
..+.=++|+|++-... ...|..+...++ .|-.|+.|+...
T Consensus 82 --~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 82 --KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp --HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred --hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2244589999874321 135677766555 355688887643
No 496
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=85.45 E-value=2.3 Score=47.20 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=63.7
Q ss_pred ccccchhhHHHHHHHHhCCCCCCCCCcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHH
Q 000983 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMI 250 (1199)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~ 250 (1199)
.++|....+.++...+..-. .... .|.|+|.+|+||+++|+.++....-... ||.+.-.. ....+...+.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a---~~~~-~vli~GesGtGKe~lAr~ih~~s~r~~~-----fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA---KSKA-PVLITGESGTGKEIVARLIHRYSGRKGA-----FVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH---TSCS-CEEEECCTTSSHHHHHHHHHHHHCCCSC-----EEEEESSSSCTTTHHHHHH
T ss_pred cccccchHHHHHHhhhhhhh---ccch-hheEEeCCCchHHHHHHHHHHhccccCC-----cEEEEcccCChHHHHHHhc
Confidence 46676666555554443211 1113 3569999999999999999863221111 44433221 2122222222
Q ss_pred HhcccCCCC--CCcHHHHHHHHHHHhCCCeEEEEEecCCCcCccChHHHHHhhhCC------C-----CCcEEEEecCC
Q 000983 251 EFHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG------H-----KGSRVLVTSRT 316 (1199)
Q Consensus 251 ~~~~~~~~~--~~~~~~l~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iivTtR~ 316 (1199)
..-.+.... ...... +.. .+. -.|+||+|.+........+...+..+ + ...|||.||..
T Consensus 201 g~~~g~~tga~~~~~g~----~~~--a~~-gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 201 GHEKGAFTGALTRKKGK----LEL--ADQ-GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp EECSCSSSSCCCCEECH----HHH--TTT-SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS
T ss_pred CccccccCCcccccCCh----Hhh--cCC-CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC
Confidence 211111111 111111 111 122 25899999776656667777777432 1 13567777663
No 497
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.32 E-value=1 Score=60.25 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=54.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC-----CCCcHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1199)
.-.++.|.|.+|+||||||.+++... ...=..++|++....++... ++.++.... ...+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 35589999999999999999998743 22223578888777666432 344443211 1345566655555
Q ss_pred HHh-CCCeEEEEEecCC
Q 000983 272 EFL-TGQRFLLVLDDVW 287 (1199)
Q Consensus 272 ~~l-~~k~~LlVlDdvw 287 (1199)
... +.+.-+||+|-+-
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 433 2445699999884
No 498
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.32 E-value=0.42 Score=50.15 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhc
Q 000983 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1199)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1199)
.+++|+|..|.|||||.+.++-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999986
No 499
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.12 E-value=0.97 Score=59.65 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=53.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHhcccCCC-----CCCcHHHHHHHHH
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1199)
.-+++-|.|.+|+||||||.+++... ...=..++|++....++... ++.++.... ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 35589999999999999999998742 22234678888877776532 334432211 1334555555555
Q ss_pred HHh-CCCeEEEEEecCC
Q 000983 272 EFL-TGQRFLLVLDDVW 287 (1199)
Q Consensus 272 ~~l-~~k~~LlVlDdvw 287 (1199)
... +.+.-+||+|-+-
T Consensus 455 ~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHhcCCCEEEECCHH
Confidence 433 2445599999984
No 500
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.95 E-value=0.62 Score=45.46 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHhcc
Q 000983 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1199)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1199)
+...|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557889999999999999999764
Done!