Query 000984
Match_columns 1198
No_of_seqs 535 out of 4801
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 12:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 8E-178 2E-182 1616.0 116.7 1109 43-1177 12-1121(1228)
2 PTZ00265 multidrug resistance 100.0 3E-143 7E-148 1416.6 138.1 1120 42-1177 43-1353(1466)
3 KOG0054 Multidrug resistance-a 100.0 7E-145 2E-149 1360.8 111.6 995 127-1177 262-1270(1381)
4 PLN03130 ABC transporter C fam 100.0 2E-130 4E-135 1307.0 131.3 982 129-1176 367-1368(1622)
5 PLN03232 ABC transporter C fam 100.0 7E-129 2E-133 1294.6 128.5 985 129-1177 367-1366(1495)
6 TIGR00957 MRP_assoc_pro multi 100.0 5E-125 1E-129 1259.2 132.1 1019 127-1177 382-1416(1522)
7 PTZ00243 ABC transporter; Prov 100.0 4E-119 9E-124 1197.9 130.6 995 131-1177 309-1440(1560)
8 TIGR01271 CFTR_protein cystic 100.0 1E-116 2E-121 1174.9 130.5 1009 132-1177 147-1348(1490)
9 KOG0058 Peptide exporter, ABC 100.0 1E-100 3E-105 888.7 68.5 576 44-626 133-708 (716)
10 KOG0055 Multidrug/pheromone ex 100.0 1.5E-96 3E-101 901.4 71.6 579 42-623 648-1226(1228)
11 COG2274 SunT ABC-type bacterio 100.0 2.4E-85 5.1E-90 798.6 72.4 550 61-622 159-708 (709)
12 KOG0054 Multidrug resistance-a 100.0 6.3E-86 1.4E-90 829.0 62.0 574 36-620 793-1373(1381)
13 PRK11174 cysteine/glutathione 100.0 2.5E-80 5.4E-85 770.5 75.9 567 46-623 10-585 (588)
14 PTZ00265 multidrug resistance 100.0 4.3E-80 9.4E-85 816.6 76.0 570 46-622 813-1465(1466)
15 TIGR00958 3a01208 Conjugate Tr 100.0 7.9E-80 1.7E-84 775.7 74.8 565 43-618 146-710 (711)
16 COG1132 MdlB ABC-type multidru 100.0 6E-79 1.3E-83 753.5 75.6 551 60-623 15-565 (567)
17 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.4E-78 1.6E-82 759.4 77.4 563 44-621 121-684 (686)
18 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-78 3.1E-83 812.4 73.8 569 42-621 948-1519(1522)
19 KOG0058 Peptide exporter, ABC 100.0 1.8E-79 3.9E-84 712.7 53.2 465 706-1176 134-598 (716)
20 PLN03130 ABC transporter C fam 100.0 5.9E-78 1.3E-82 803.8 73.7 569 40-623 895-1475(1622)
21 TIGR01193 bacteriocin_ABC ABC- 100.0 4.5E-77 9.8E-82 754.8 75.5 565 44-620 142-707 (708)
22 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.5E-77 9.7E-82 755.9 75.2 561 46-619 142-709 (710)
23 COG4988 CydD ABC-type transpor 100.0 2.3E-76 5.1E-81 675.7 70.6 548 68-624 9-557 (559)
24 PRK11160 cysteine/glutathione 100.0 4E-76 8.6E-81 726.3 75.4 566 46-620 4-572 (574)
25 TIGR03375 type_I_sec_LssB type 100.0 2.8E-76 6.1E-81 745.9 74.9 532 70-610 158-689 (694)
26 PRK11176 lipid transporter ATP 100.0 8.6E-76 1.9E-80 729.6 76.5 547 66-622 32-579 (582)
27 PTZ00243 ABC transporter; Prov 100.0 3.8E-76 8.3E-81 785.8 75.6 512 108-622 1003-1546(1560)
28 PLN03232 ABC transporter C fam 100.0 2.1E-76 4.5E-81 790.4 72.4 512 105-622 952-1471(1495)
29 PRK10790 putative multidrug tr 100.0 4.3E-75 9.3E-80 723.5 77.4 564 48-625 13-578 (592)
30 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-74 2.8E-79 718.5 76.1 562 49-621 5-567 (571)
31 TIGR01846 type_I_sec_HlyB type 100.0 1.7E-74 3.7E-79 728.9 76.8 538 75-622 155-692 (694)
32 KOG0057 Mitochondrial Fe/S clu 100.0 8.6E-75 1.9E-79 649.6 61.0 546 69-623 40-587 (591)
33 KOG0056 Heavy metal exporter H 100.0 3.1E-77 6.8E-82 650.4 37.8 506 116-626 272-778 (790)
34 PRK13657 cyclic beta-1,2-gluca 100.0 2.4E-73 5.2E-78 706.6 77.6 565 46-623 7-571 (588)
35 TIGR02204 MsbA_rel ABC transpo 100.0 1.6E-73 3.5E-78 708.9 75.9 552 64-621 23-574 (576)
36 TIGR02868 CydC thiol reductant 100.0 3.9E-74 8.4E-79 706.0 69.5 524 49-581 4-529 (529)
37 PRK10789 putative multidrug tr 100.0 2E-73 4.3E-78 702.4 73.0 539 77-624 13-552 (569)
38 TIGR01271 CFTR_protein cystic 100.0 7.2E-74 1.6E-78 764.4 73.0 498 115-623 937-1453(1490)
39 COG4987 CydC ABC-type transpor 100.0 3.4E-73 7.4E-78 636.7 64.5 503 111-620 66-571 (573)
40 TIGR01192 chvA glucan exporter 100.0 2.3E-72 5E-77 693.6 77.0 564 46-622 7-570 (585)
41 TIGR02857 CydD thiol reductant 100.0 9.9E-72 2.1E-76 684.7 71.1 523 63-593 7-529 (529)
42 TIGR01842 type_I_sec_PrtD type 100.0 6.2E-70 1.3E-74 669.2 73.8 522 72-609 19-542 (544)
43 COG5265 ATM1 ABC-type transpor 100.0 2.7E-70 5.9E-75 593.2 41.8 490 126-620 5-496 (497)
44 TIGR01194 cyc_pep_trnsptr cycl 100.0 8E-66 1.7E-70 632.3 67.8 534 45-601 4-551 (555)
45 COG4618 ArpD ABC-type protease 100.0 3.4E-65 7.4E-70 566.0 53.9 519 77-610 41-561 (580)
46 COG2274 SunT ABC-type bacterio 100.0 5.7E-65 1.2E-69 620.0 57.7 462 707-1176 142-603 (709)
47 PRK10522 multidrug transporter 100.0 2.5E-61 5.3E-66 592.8 67.0 464 117-601 62-530 (547)
48 TIGR02868 CydC thiol reductant 100.0 1.5E-61 3.3E-66 594.4 58.0 458 710-1177 4-465 (529)
49 TIGR00958 3a01208 Conjugate Tr 100.0 1.3E-60 2.8E-65 601.4 59.2 465 706-1177 148-612 (711)
50 COG1132 MdlB ABC-type multidru 100.0 7.2E-60 1.6E-64 583.5 58.7 448 717-1177 13-460 (567)
51 PRK11174 cysteine/glutathione 100.0 1.4E-59 3.1E-64 584.4 58.3 461 707-1176 10-479 (588)
52 TIGR01193 bacteriocin_ABC ABC- 100.0 3.4E-59 7.4E-64 591.7 58.6 463 707-1177 144-606 (708)
53 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-58 3.2E-63 583.9 59.8 453 714-1177 131-583 (686)
54 TIGR00954 3a01203 Peroxysomal 100.0 4.7E-58 1E-62 570.3 62.9 530 46-595 79-653 (659)
55 PRK11160 cysteine/glutathione 100.0 3.8E-58 8.3E-63 566.6 58.5 461 709-1177 6-470 (574)
56 TIGR03375 type_I_sec_LssB type 100.0 3.9E-58 8.6E-63 580.7 58.9 461 707-1176 135-595 (694)
57 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.3E-58 1.1E-62 581.6 58.7 464 707-1177 142-610 (710)
58 TIGR02857 CydD thiol reductant 100.0 5.2E-57 1.1E-61 554.4 59.1 451 718-1176 2-452 (529)
59 TIGR01846 type_I_sec_HlyB type 100.0 9.1E-57 2E-61 567.7 59.6 462 707-1177 127-588 (694)
60 KOG0056 Heavy metal exporter H 100.0 1.1E-59 2.3E-64 513.4 27.7 446 721-1177 217-669 (790)
61 PRK11176 lipid transporter ATP 100.0 2.9E-56 6.4E-61 554.5 59.1 461 709-1177 15-475 (582)
62 TIGR02203 MsbA_lipidA lipid A 100.0 6.1E-56 1.3E-60 551.2 58.8 460 710-1177 5-464 (571)
63 PRK10790 putative multidrug tr 100.0 6.8E-56 1.5E-60 551.4 58.1 458 708-1176 12-470 (592)
64 TIGR02204 MsbA_rel ABC transpo 100.0 1.3E-54 2.8E-59 539.5 59.2 463 709-1176 8-470 (576)
65 TIGR01192 chvA glucan exporter 100.0 1.7E-54 3.6E-59 534.8 58.6 459 707-1176 7-465 (585)
66 COG4988 CydD ABC-type transpor 100.0 3.8E-54 8.2E-59 493.2 55.5 446 724-1177 5-451 (559)
67 PRK10789 putative multidrug tr 100.0 1.8E-54 3.9E-59 534.0 56.6 437 732-1176 8-445 (569)
68 PRK13657 cyclic beta-1,2-gluca 100.0 5.7E-54 1.2E-58 533.2 58.7 459 707-1176 7-465 (588)
69 KOG0057 Mitochondrial Fe/S clu 100.0 1.8E-54 4E-59 486.0 46.2 444 724-1176 35-481 (591)
70 COG4987 CydC ABC-type transpor 100.0 5.4E-53 1.2E-57 474.1 51.3 451 717-1176 14-468 (573)
71 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.9E-53 1.7E-57 517.3 53.4 452 707-1175 5-468 (555)
72 TIGR01842 type_I_sec_PrtD type 100.0 4.2E-52 9.1E-57 511.3 58.4 445 716-1176 3-448 (544)
73 COG5265 ATM1 ABC-type transpor 100.0 2.7E-52 5.8E-57 453.2 31.8 392 782-1178 3-395 (497)
74 PRK13549 xylose transporter AT 100.0 1.3E-50 2.7E-55 493.3 32.7 212 383-604 5-227 (506)
75 COG1123 ATPase components of v 100.0 2E-49 4.4E-54 457.2 37.0 227 383-615 5-250 (539)
76 PRK10261 glutathione transport 100.0 1.9E-49 4.2E-54 491.5 36.9 221 382-609 11-258 (623)
77 PRK09700 D-allose transporter 100.0 1.4E-49 3E-54 485.1 34.9 214 383-606 5-231 (510)
78 PRK15134 microcin C ABC transp 100.0 5.5E-49 1.2E-53 481.5 37.7 218 383-607 5-244 (529)
79 PRK10762 D-ribose transporter 100.0 3.9E-49 8.5E-54 479.6 32.1 212 383-604 4-225 (501)
80 TIGR01257 rim_protein retinal- 100.0 2.4E-46 5.2E-51 491.9 60.0 220 382-610 927-1150(2272)
81 TIGR02633 xylG D-xylose ABC tr 100.0 5.3E-49 1.1E-53 479.3 32.3 209 384-602 2-223 (500)
82 TIGR03269 met_CoM_red_A2 methy 100.0 3.9E-49 8.4E-54 482.3 28.5 211 384-604 1-253 (520)
83 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-48 2.5E-53 433.4 27.2 236 382-621 1-236 (275)
84 PRK11288 araG L-arabinose tran 100.0 2E-48 4.3E-53 473.5 31.9 209 383-601 4-221 (501)
85 PRK10938 putative molybdenum t 100.0 3.3E-48 7.2E-53 471.0 33.6 210 383-608 3-223 (490)
86 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-46 2.3E-51 499.3 48.5 206 399-608 74-299 (1394)
87 PRK15439 autoinducer 2 ABC tra 100.0 7.6E-48 1.6E-52 468.4 33.9 213 383-607 11-227 (510)
88 PRK10982 galactose/methyl gala 100.0 4.6E-48 1E-52 469.5 30.6 209 386-604 1-218 (491)
89 PRK10522 multidrug transporter 100.0 1E-45 2.2E-50 454.5 51.5 429 713-1166 7-439 (547)
90 COG1126 GlnQ ABC-type polar am 100.0 1.8E-48 3.9E-53 390.9 21.8 216 383-612 2-228 (240)
91 COG4618 ArpD ABC-type protease 100.0 2.5E-45 5.4E-50 407.9 44.3 434 729-1177 33-467 (580)
92 PRK15064 ABC transporter ATP-b 100.0 1.7E-46 3.7E-51 459.7 38.6 208 384-609 2-242 (530)
93 PRK11819 putative ABC transpor 100.0 2.6E-46 5.6E-51 459.3 36.9 209 383-609 6-250 (556)
94 TIGR00954 3a01203 Peroxysomal 100.0 1.1E-44 2.4E-49 450.6 50.3 452 707-1175 79-576 (659)
95 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.5E-46 1.6E-50 455.2 37.4 209 383-609 4-248 (552)
96 PRK14257 phosphate ABC transpo 100.0 3E-46 6.6E-51 424.9 26.5 227 378-612 75-316 (329)
97 COG1135 AbcC ABC-type metal io 100.0 1.7E-46 3.8E-51 395.9 21.3 218 384-612 2-234 (339)
98 COG1117 PstB ABC-type phosphat 100.0 1.5E-46 3.3E-51 374.5 19.0 220 382-611 6-239 (253)
99 PLN03140 ABC transporter G fam 100.0 4.1E-44 8.8E-49 471.9 47.5 207 399-608 178-426 (1470)
100 COG1125 OpuBA ABC-type proline 100.0 2.4E-46 5.2E-51 382.2 19.8 223 384-616 2-232 (309)
101 COG4172 ABC-type uncharacteriz 100.0 1.1E-44 2.3E-49 390.5 31.2 229 383-619 6-257 (534)
102 PRK10636 putative ABC transpor 100.0 1.6E-43 3.5E-48 438.6 35.3 207 384-608 2-235 (638)
103 cd03252 ABCC_Hemolysin The ABC 100.0 7E-44 1.5E-48 391.8 27.5 234 384-619 1-234 (237)
104 cd03288 ABCC_SUR2 The SUR doma 100.0 2.1E-43 4.6E-48 391.7 28.2 240 379-620 15-254 (257)
105 PRK11147 ABC transporter ATPas 100.0 1.5E-42 3.3E-47 431.5 36.2 207 383-609 3-243 (635)
106 cd03254 ABCC_Glucan_exporter_l 100.0 9.6E-43 2.1E-47 380.8 27.2 227 382-610 1-227 (229)
107 COG3839 MalK ABC-type sugar tr 100.0 3.3E-43 7.1E-48 388.8 22.8 217 383-615 3-229 (338)
108 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-42 2.3E-47 381.9 26.7 226 384-610 1-226 (234)
109 COG1120 FepC ABC-type cobalami 100.0 2.1E-43 4.6E-48 375.8 20.3 214 383-610 2-229 (258)
110 cd03253 ABCC_ATM1_transporter 100.0 1.3E-42 2.9E-47 381.6 27.2 232 384-618 1-232 (236)
111 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.4E-42 3E-47 381.7 26.9 227 384-610 1-227 (238)
112 COG1127 Ttg2A ABC-type transpo 100.0 6.3E-43 1.4E-47 356.6 21.8 223 382-618 7-244 (263)
113 COG0488 Uup ATPase components 100.0 8.8E-42 1.9E-46 404.0 33.6 208 383-609 3-240 (530)
114 cd03244 ABCC_MRP_domain2 Domai 100.0 2.9E-42 6.2E-47 374.9 26.4 220 382-603 1-220 (221)
115 COG1116 TauB ABC-type nitrate/ 100.0 7E-43 1.5E-47 363.3 20.4 195 383-596 3-207 (248)
116 PLN03073 ABC transporter F fam 100.0 3.2E-42 7E-47 426.9 28.7 220 382-608 176-430 (718)
117 TIGR02314 ABC_MetN D-methionin 100.0 2.9E-42 6.2E-47 392.4 24.9 219 384-613 2-234 (343)
118 COG4615 PvdE ABC-type sideroph 100.0 4.3E-39 9.4E-44 345.7 47.0 462 117-601 62-529 (546)
119 COG1122 CbiO ABC-type cobalt t 100.0 2.6E-42 5.7E-47 368.9 21.7 215 383-610 3-229 (235)
120 cd03245 ABCC_bacteriocin_expor 100.0 1.1E-41 2.4E-46 370.1 26.6 219 383-602 2-220 (220)
121 COG3840 ThiQ ABC-type thiamine 100.0 3.3E-42 7.1E-47 333.9 19.8 209 384-610 2-220 (231)
122 COG3842 PotA ABC-type spermidi 100.0 1.4E-42 3E-47 385.9 19.2 217 383-615 5-232 (352)
123 COG1136 SalX ABC-type antimicr 100.0 6.4E-42 1.4E-46 357.3 22.5 205 384-599 2-221 (226)
124 COG2884 FtsE Predicted ATPase 100.0 1.9E-42 4.1E-47 339.0 17.2 207 384-603 2-220 (223)
125 COG1124 DppF ABC-type dipeptid 100.0 4.7E-42 1E-46 352.8 20.7 226 383-618 3-240 (252)
126 COG3638 ABC-type phosphate/pho 100.0 6.3E-42 1.4E-46 348.4 20.9 213 383-608 3-236 (258)
127 PRK13631 cbiO cobalt transport 100.0 1.2E-41 2.7E-46 386.1 25.7 222 382-610 20-266 (320)
128 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.1E-41 2.4E-46 360.3 23.5 210 383-610 4-228 (254)
129 cd03248 ABCC_TAP TAP, the Tran 100.0 2E-41 4.3E-46 369.5 24.4 220 379-598 7-226 (226)
130 PRK13409 putative ATPase RIL; 100.0 4.9E-41 1.1E-45 409.8 26.8 193 387-596 77-287 (590)
131 COG1118 CysA ABC-type sulfate/ 100.0 1.4E-41 3.1E-46 357.5 18.6 217 383-615 2-233 (345)
132 cd03260 ABC_PstB_phosphate_tra 100.0 3.3E-41 7.1E-46 368.1 21.9 210 384-607 1-227 (227)
133 PRK14269 phosphate ABC transpo 100.0 9.6E-41 2.1E-45 368.4 24.5 218 383-610 2-231 (246)
134 cd03261 ABC_Org_Solvent_Resist 100.0 1.1E-40 2.4E-45 365.7 24.8 217 384-610 1-227 (235)
135 COG3845 ABC-type uncharacteriz 100.0 2.1E-39 4.7E-44 362.6 34.8 208 383-600 4-220 (501)
136 PRK13650 cbiO cobalt transport 100.0 1.2E-40 2.6E-45 373.4 24.7 217 383-610 4-230 (279)
137 TIGR01186 proV glycine betaine 100.0 7.1E-41 1.5E-45 382.8 22.6 207 399-616 6-226 (363)
138 COG1129 MglA ABC-type sugar tr 100.0 9E-40 2E-44 375.2 31.6 209 383-601 8-226 (500)
139 PRK11432 fbpC ferric transport 100.0 1.5E-40 3.2E-45 380.8 24.6 216 383-614 6-231 (351)
140 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-40 3.7E-45 381.4 25.2 218 383-615 3-230 (356)
141 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.9E-40 6.3E-45 355.0 25.4 204 381-604 4-207 (207)
142 PRK13637 cbiO cobalt transport 100.0 2.4E-40 5.2E-45 372.1 24.8 220 384-610 3-235 (287)
143 PRK11153 metN DL-methionine tr 100.0 2.2E-40 4.9E-45 380.4 25.0 222 384-612 2-233 (343)
144 PRK14250 phosphate ABC transpo 100.0 4.3E-40 9.3E-45 361.8 25.8 220 383-616 3-228 (241)
145 cd03219 ABC_Mj1267_LivG_branch 100.0 2E-40 4.4E-45 364.2 23.1 222 384-610 1-233 (236)
146 PRK13643 cbiO cobalt transport 100.0 2.6E-40 5.6E-45 372.1 24.4 220 384-610 2-234 (288)
147 TIGR03265 PhnT2 putative 2-ami 100.0 1.9E-40 4.2E-45 380.6 23.5 221 383-615 4-230 (353)
148 COG4178 ABC-type uncharacteriz 100.0 1.1E-36 2.3E-41 356.4 54.4 414 163-594 150-587 (604)
149 TIGR00972 3a0107s01c2 phosphat 100.0 6.2E-40 1.3E-44 362.4 25.8 218 384-611 2-234 (247)
150 PRK14273 phosphate ABC transpo 100.0 5.7E-40 1.2E-44 364.3 25.4 221 383-613 7-242 (254)
151 PRK13647 cbiO cobalt transport 100.0 4.6E-40 9.9E-45 367.7 24.5 212 383-607 4-225 (274)
152 PRK13646 cbiO cobalt transport 100.0 4E-40 8.8E-45 370.5 24.1 220 384-610 3-236 (286)
153 PRK10744 pstB phosphate transp 100.0 6.4E-40 1.4E-44 364.7 25.3 221 381-611 11-246 (260)
154 PRK14242 phosphate transporter 100.0 4.4E-40 9.5E-45 365.2 23.8 218 383-610 6-238 (253)
155 PRK13634 cbiO cobalt transport 100.0 5.5E-40 1.2E-44 369.8 23.8 220 384-610 3-236 (290)
156 PRK13635 cbiO cobalt transport 100.0 6.9E-40 1.5E-44 366.9 24.4 216 383-610 5-230 (279)
157 cd03224 ABC_TM1139_LivF_branch 100.0 5.6E-40 1.2E-44 357.3 23.0 217 384-609 1-221 (222)
158 cd03296 ABC_CysA_sulfate_impor 100.0 7.2E-40 1.6E-44 360.0 23.9 216 383-610 2-227 (239)
159 PRK14235 phosphate transporter 100.0 9.6E-40 2.1E-44 364.3 24.9 220 381-610 17-252 (267)
160 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.4E-40 1.8E-44 360.2 23.9 218 384-610 1-226 (242)
161 PRK10851 sulfate/thiosulfate t 100.0 9.5E-40 2.1E-44 374.8 25.2 221 383-615 2-232 (353)
162 TIGR03258 PhnT 2-aminoethylpho 100.0 6.5E-40 1.4E-44 376.4 23.5 223 381-615 3-234 (362)
163 cd03256 ABC_PhnC_transporter A 100.0 8.8E-40 1.9E-44 360.5 23.6 215 384-608 1-233 (241)
164 TIGR00960 3a0501s02 Type II (G 100.0 3.8E-40 8.3E-45 356.8 20.3 203 384-598 2-216 (216)
165 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.6E-39 1E-43 358.1 29.4 212 380-610 36-248 (282)
166 cd03250 ABCC_MRP_domain1 Domai 100.0 1E-39 2.2E-44 350.0 23.3 200 384-597 1-204 (204)
167 PRK09452 potA putrescine/sperm 100.0 9.5E-40 2.1E-44 376.3 24.7 217 383-615 14-240 (375)
168 cd03258 ABC_MetN_methionine_tr 100.0 8.7E-40 1.9E-44 358.3 23.1 220 384-610 2-231 (233)
169 PRK13651 cobalt transporter AT 100.0 9.6E-40 2.1E-44 368.6 24.1 220 384-610 3-255 (305)
170 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6E-40 1.3E-44 366.0 21.8 217 385-615 26-256 (269)
171 cd03263 ABC_subfamily_A The AB 100.0 7E-40 1.5E-44 355.9 21.5 215 384-607 1-219 (220)
172 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-39 2.7E-44 359.6 23.6 214 384-607 2-233 (243)
173 PRK09536 btuD corrinoid ABC tr 100.0 1.4E-39 3E-44 376.6 24.9 214 383-610 3-229 (402)
174 PRK13636 cbiO cobalt transport 100.0 1.3E-39 2.8E-44 365.9 23.8 219 383-610 5-232 (283)
175 PRK14259 phosphate ABC transpo 100.0 2.2E-39 4.8E-44 361.5 25.4 220 382-611 12-255 (269)
176 PRK14267 phosphate ABC transpo 100.0 1.4E-39 3E-44 361.2 23.4 218 383-610 4-238 (253)
177 PRK14274 phosphate ABC transpo 100.0 2.4E-39 5.2E-44 360.1 24.9 219 383-611 12-245 (259)
178 cd03218 ABC_YhbG The ABC trans 100.0 1.6E-39 3.4E-44 356.2 22.7 216 384-609 1-222 (232)
179 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.8E-39 3.9E-44 356.1 23.2 216 384-610 2-222 (236)
180 PRK11000 maltose/maltodextrin 100.0 1.6E-39 3.5E-44 376.2 23.9 219 383-613 3-227 (369)
181 PRK14247 phosphate ABC transpo 100.0 2.9E-39 6.2E-44 358.0 24.7 219 383-611 3-236 (250)
182 COG0410 LivF ABC-type branched 100.0 2.9E-39 6.4E-44 330.1 22.4 220 383-610 3-227 (237)
183 PRK13632 cbiO cobalt transport 100.0 2.5E-39 5.4E-44 361.7 24.1 220 383-610 7-232 (271)
184 PRK15079 oligopeptide ABC tran 100.0 3.6E-39 7.7E-44 367.3 25.7 228 383-617 8-259 (331)
185 PRK11629 lolD lipoprotein tran 100.0 2.5E-39 5.4E-44 354.3 23.5 214 383-603 5-228 (233)
186 PRK14251 phosphate ABC transpo 100.0 2E-39 4.4E-44 359.4 23.1 220 383-612 4-238 (251)
187 PRK13642 cbiO cobalt transport 100.0 2.7E-39 5.8E-44 362.4 24.2 217 383-610 4-230 (277)
188 cd03266 ABC_NatA_sodium_export 100.0 1.7E-39 3.7E-44 352.4 21.9 211 384-602 2-218 (218)
189 PRK13640 cbiO cobalt transport 100.0 3.5E-39 7.5E-44 362.1 25.1 217 382-610 4-233 (282)
190 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-39 2.7E-44 351.9 20.8 207 384-602 1-213 (213)
191 PRK14236 phosphate transporter 100.0 3.8E-39 8.3E-44 360.4 25.1 220 381-610 23-257 (272)
192 PRK13537 nodulation ABC transp 100.0 1.9E-39 4.1E-44 367.2 22.9 217 383-610 7-228 (306)
193 PRK14248 phosphate ABC transpo 100.0 3.7E-39 7.9E-44 360.3 24.9 218 383-610 21-253 (268)
194 cd03247 ABCC_cytochrome_bd The 100.0 1.9E-39 4.1E-44 339.5 21.2 178 384-602 1-178 (178)
195 PRK14240 phosphate transporter 100.0 4E-39 8.7E-44 356.8 24.9 219 382-610 2-235 (250)
196 PRK14237 phosphate transporter 100.0 4.5E-39 9.8E-44 358.8 25.4 219 382-610 19-252 (267)
197 PRK11831 putative ABC transpor 100.0 2.9E-39 6.3E-44 360.8 23.5 219 383-611 7-235 (269)
198 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-39 2.7E-44 353.5 19.9 208 384-598 1-218 (218)
199 PRK14268 phosphate ABC transpo 100.0 3.4E-39 7.5E-44 358.4 23.9 219 383-611 12-244 (258)
200 cd03226 ABC_cobalt_CbiO_domain 100.0 1.3E-39 2.8E-44 349.5 19.8 199 385-599 1-205 (205)
201 PRK11614 livF leucine/isoleuci 100.0 4.2E-39 9.1E-44 353.7 24.1 218 383-609 5-226 (237)
202 PRK11607 potG putrescine trans 100.0 3E-39 6.6E-44 372.9 24.1 222 382-615 18-245 (377)
203 PRK14249 phosphate ABC transpo 100.0 6E-39 1.3E-43 355.4 25.4 218 383-610 4-236 (251)
204 PRK13644 cbiO cobalt transport 100.0 4.3E-39 9.3E-44 359.8 24.4 218 384-610 2-225 (274)
205 PRK14245 phosphate ABC transpo 100.0 2.9E-39 6.2E-44 357.8 22.8 219 383-611 3-236 (250)
206 cd03264 ABC_drug_resistance_li 100.0 2.4E-39 5.3E-44 349.1 21.6 203 384-602 1-211 (211)
207 PRK13645 cbiO cobalt transport 100.0 3.9E-39 8.5E-44 363.6 24.0 223 381-610 4-241 (289)
208 PRK14239 phosphate transporter 100.0 4.7E-39 1E-43 356.9 24.2 219 383-611 5-238 (252)
209 PRK13648 cbiO cobalt transport 100.0 5.4E-39 1.2E-43 358.9 24.7 220 383-610 7-232 (269)
210 PRK13633 cobalt transporter AT 100.0 4.1E-39 8.9E-44 361.5 23.8 217 383-610 4-234 (280)
211 PRK09493 glnQ glutamine ABC tr 100.0 7.7E-39 1.7E-43 352.3 25.5 217 384-610 2-226 (240)
212 TIGR03005 ectoine_ehuA ectoine 100.0 4.9E-39 1.1E-43 356.3 24.0 219 384-612 1-239 (252)
213 PRK10575 iron-hydroxamate tran 100.0 4.1E-39 8.9E-44 359.0 23.4 213 383-609 11-237 (265)
214 TIGR02211 LolD_lipo_ex lipopro 100.0 3.5E-39 7.6E-44 350.7 22.1 209 384-599 2-220 (221)
215 TIGR03410 urea_trans_UrtE urea 100.0 3.9E-39 8.4E-44 352.4 22.6 214 384-607 1-219 (230)
216 PRK14238 phosphate transporter 100.0 6.8E-39 1.5E-43 357.9 24.9 219 383-611 24-257 (271)
217 TIGR02769 nickel_nikE nickel i 100.0 5E-39 1.1E-43 358.3 23.8 220 384-610 3-241 (265)
218 PRK11264 putative amino-acid A 100.0 1.1E-38 2.4E-43 353.5 26.3 219 383-611 3-235 (250)
219 PRK14256 phosphate ABC transpo 100.0 6.8E-39 1.5E-43 355.2 24.5 221 382-612 3-239 (252)
220 PRK14244 phosphate ABC transpo 100.0 3E-39 6.4E-44 357.9 21.6 219 384-612 6-240 (251)
221 PRK14261 phosphate ABC transpo 100.0 6.9E-39 1.5E-43 355.4 24.4 219 383-611 6-239 (253)
222 PRK14243 phosphate transporter 100.0 9.6E-39 2.1E-43 355.6 25.5 219 383-611 10-250 (264)
223 PRK13641 cbiO cobalt transport 100.0 5.8E-39 1.3E-43 361.3 24.0 221 383-610 2-235 (287)
224 PRK14262 phosphate ABC transpo 100.0 5.8E-39 1.3E-43 355.6 23.6 219 383-611 3-236 (250)
225 PRK10619 histidine/lysine/argi 100.0 6.1E-39 1.3E-43 356.5 23.7 220 381-610 3-242 (257)
226 PRK10070 glycine betaine trans 100.0 5.4E-39 1.2E-43 371.5 24.2 205 400-615 42-260 (400)
227 TIGR03411 urea_trans_UrtD urea 100.0 6.8E-39 1.5E-43 353.3 23.9 221 384-609 3-231 (242)
228 PRK13649 cbiO cobalt transport 100.0 5.7E-39 1.2E-43 361.2 23.7 220 384-610 3-235 (280)
229 cd03268 ABC_BcrA_bacitracin_re 100.0 4.1E-39 8.9E-44 346.5 21.5 203 384-602 1-208 (208)
230 PRK14270 phosphate ABC transpo 100.0 7.6E-39 1.7E-43 354.6 24.3 219 383-611 4-237 (251)
231 cd03265 ABC_DrrA DrrA is the A 100.0 4.1E-39 8.9E-44 349.5 21.6 209 384-607 1-219 (220)
232 PRK13652 cbiO cobalt transport 100.0 8.1E-39 1.8E-43 358.5 24.3 215 383-610 3-228 (277)
233 cd03290 ABCC_SUR1_N The SUR do 100.0 9.9E-39 2.2E-43 346.0 23.9 210 385-597 2-218 (218)
234 PRK10895 lipopolysaccharide AB 100.0 8.9E-39 1.9E-43 352.0 23.7 217 383-609 3-226 (241)
235 PRK14253 phosphate ABC transpo 100.0 1.3E-38 2.8E-43 352.5 24.9 218 383-610 3-234 (249)
236 TIGR03415 ABC_choXWV_ATP choli 100.0 6.7E-39 1.5E-43 367.9 23.3 207 399-616 37-261 (382)
237 PRK14271 phosphate ABC transpo 100.0 1.3E-38 2.9E-43 355.9 24.7 220 383-610 21-252 (276)
238 PRK11231 fecE iron-dicitrate t 100.0 1E-38 2.3E-43 354.2 23.6 212 384-609 3-227 (255)
239 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.4E-39 1.2E-43 348.6 20.7 209 384-604 1-218 (220)
240 PRK11247 ssuB aliphatic sulfon 100.0 1.2E-38 2.7E-43 351.3 23.9 204 383-605 12-219 (257)
241 PRK11308 dppF dipeptide transp 100.0 1.4E-38 3E-43 362.3 24.8 229 383-618 5-253 (327)
242 TIGR01288 nodI ATP-binding ABC 100.0 7.6E-39 1.7E-43 363.2 22.6 217 383-610 4-225 (303)
243 PRK14266 phosphate ABC transpo 100.0 1.7E-38 3.8E-43 351.7 24.8 221 383-613 3-238 (250)
244 cd03246 ABCC_Protease_Secretio 100.0 9.1E-39 2E-43 332.6 21.1 172 384-598 1-173 (173)
245 cd03301 ABC_MalK_N The N-termi 100.0 7.7E-39 1.7E-43 345.9 21.2 207 384-602 1-213 (213)
246 PRK11300 livG leucine/isoleuci 100.0 1.7E-38 3.7E-43 353.1 24.4 222 383-609 5-243 (255)
247 PRK14252 phosphate ABC transpo 100.0 1.9E-38 4.2E-43 353.9 24.8 220 381-610 14-250 (265)
248 cd03257 ABC_NikE_OppD_transpor 100.0 9.6E-39 2.1E-43 349.3 21.9 212 384-602 2-228 (228)
249 PRK10247 putative ABC transpor 100.0 1.3E-38 2.8E-43 346.3 22.7 212 383-605 7-223 (225)
250 PRK11124 artP arginine transpo 100.0 1.6E-38 3.4E-43 350.2 23.7 217 383-609 2-230 (242)
251 PRK14254 phosphate ABC transpo 100.0 2.3E-38 5E-43 355.4 25.4 219 382-610 38-270 (285)
252 PRK14260 phosphate ABC transpo 100.0 1.3E-38 2.8E-43 354.0 23.2 219 382-610 6-244 (259)
253 TIGR02673 FtsE cell division A 100.0 7.6E-39 1.6E-43 346.2 20.7 201 384-597 2-214 (214)
254 PRK13638 cbiO cobalt transport 100.0 1.5E-38 3.2E-43 355.8 23.7 217 384-610 2-226 (271)
255 PRK13536 nodulation factor exp 100.0 1.1E-38 2.4E-43 364.2 22.9 217 383-610 41-262 (340)
256 PRK09473 oppD oligopeptide tra 100.0 1.3E-38 2.8E-43 363.0 23.4 231 383-618 12-260 (330)
257 PRK11022 dppD dipeptide transp 100.0 1.5E-38 3.2E-43 362.4 23.7 228 383-618 3-252 (326)
258 cd03225 ABC_cobalt_CbiO_domain 100.0 7.5E-39 1.6E-43 345.5 20.2 205 385-597 1-211 (211)
259 PRK14272 phosphate ABC transpo 100.0 2.1E-38 4.6E-43 351.7 24.2 221 383-613 4-240 (252)
260 PRK14275 phosphate ABC transpo 100.0 1.4E-38 3.1E-43 357.6 23.1 221 382-612 38-273 (286)
261 PRK13548 hmuV hemin importer A 100.0 2.6E-38 5.6E-43 350.9 24.7 213 383-609 2-230 (258)
262 PRK13639 cbiO cobalt transport 100.0 1.7E-38 3.7E-43 355.5 23.5 218 384-610 2-227 (275)
263 TIGR03522 GldA_ABC_ATP gliding 100.0 1.4E-38 3E-43 360.4 22.6 216 384-610 3-222 (301)
264 PRK10253 iron-enterobactin tra 100.0 3.1E-38 6.8E-43 352.0 24.9 214 382-609 6-233 (265)
265 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-38 3.2E-43 347.8 21.7 211 384-610 1-221 (232)
266 PRK14263 phosphate ABC transpo 100.0 3.4E-38 7.4E-43 350.0 24.6 219 383-611 8-247 (261)
267 COG4175 ProV ABC-type proline/ 100.0 6.1E-39 1.3E-43 337.2 17.5 224 383-617 4-262 (386)
268 TIGR03873 F420-0_ABC_ATP propo 100.0 2.8E-38 6E-43 351.0 23.7 215 384-609 2-226 (256)
269 TIGR00968 3a0106s01 sulfate AB 100.0 3E-38 6.6E-43 346.2 23.6 215 384-610 1-221 (237)
270 PRK14265 phosphate ABC transpo 100.0 5.7E-38 1.2E-42 350.8 26.2 219 383-611 20-260 (274)
271 PRK14241 phosphate transporter 100.0 3E-38 6.6E-43 351.1 23.9 218 383-610 4-243 (258)
272 cd03292 ABC_FtsE_transporter F 100.0 1.5E-38 3.3E-43 344.0 20.8 202 384-598 1-214 (214)
273 PRK14264 phosphate ABC transpo 100.0 4.1E-38 8.8E-43 356.9 25.2 219 382-610 44-290 (305)
274 cd03235 ABC_Metallic_Cations A 100.0 1E-38 2.2E-43 344.8 19.2 197 386-602 2-213 (213)
275 PRK11701 phnK phosphonate C-P 100.0 4E-38 8.6E-43 350.2 24.4 224 383-616 6-248 (258)
276 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.3E-38 7.1E-43 340.3 22.9 201 384-602 1-211 (211)
277 PRK14258 phosphate ABC transpo 100.0 3.7E-38 8E-43 350.5 23.9 221 382-612 6-248 (261)
278 PRK13547 hmuV hemin importer A 100.0 3.4E-38 7.4E-43 350.8 23.4 216 384-609 2-244 (272)
279 PRK14255 phosphate ABC transpo 100.0 3.5E-38 7.6E-43 349.7 23.3 219 383-611 5-238 (252)
280 PRK10771 thiQ thiamine transpo 100.0 5.9E-38 1.3E-42 343.2 24.6 209 384-610 2-220 (232)
281 PRK10908 cell division protein 100.0 3.8E-38 8.3E-43 342.4 22.7 207 384-599 2-216 (222)
282 cd03269 ABC_putative_ATPase Th 100.0 1.8E-38 3.9E-43 342.1 19.8 205 384-602 1-210 (210)
283 PRK10584 putative ABC transpor 100.0 4.6E-38 1E-42 343.5 23.2 208 383-601 6-227 (228)
284 PRK14246 phosphate ABC transpo 100.0 3.9E-38 8.5E-43 348.7 22.7 224 383-616 10-248 (257)
285 cd03262 ABC_HisP_GlnQ_permease 100.0 2.6E-38 5.7E-43 341.9 20.2 205 384-598 1-213 (213)
286 COG1137 YhbG ABC-type (unclass 100.0 4.7E-39 1E-43 317.2 12.7 224 382-611 3-230 (243)
287 PRK11144 modC molybdate transp 100.0 7.1E-38 1.5E-42 361.0 24.7 212 384-612 2-221 (352)
288 PRK15093 antimicrobial peptide 100.0 6.6E-38 1.4E-42 358.5 24.2 228 383-618 3-257 (330)
289 cd03234 ABCG_White The White s 100.0 3.7E-38 8E-43 343.4 21.0 214 384-602 4-226 (226)
290 PRK15112 antimicrobial peptide 100.0 9.1E-38 2E-42 348.4 24.4 219 383-611 4-241 (267)
291 COG4619 ABC-type uncharacteriz 100.0 1.2E-38 2.6E-43 304.6 14.5 192 398-599 15-213 (223)
292 cd03299 ABC_ModC_like Archeal 100.0 9.4E-38 2E-42 341.9 23.9 210 384-610 1-220 (235)
293 PRK09984 phosphonate/organopho 100.0 1.1E-37 2.4E-42 347.5 24.7 220 383-607 4-240 (262)
294 TIGR01978 sufC FeS assembly AT 100.0 6.5E-38 1.4E-42 346.1 22.6 215 384-608 1-233 (243)
295 COG4555 NatA ABC-type Na+ tran 100.0 1.5E-38 3.3E-43 314.0 15.5 219 384-610 2-223 (245)
296 TIGR01277 thiQ thiamine ABC tr 100.0 1.1E-37 2.4E-42 336.4 23.3 201 385-603 2-212 (213)
297 TIGR01188 drrA daunorubicin re 100.0 5.7E-38 1.2E-42 355.9 20.9 204 399-610 6-214 (302)
298 COG1131 CcmA ABC-type multidru 100.0 8E-38 1.7E-42 350.1 21.3 214 383-610 4-227 (293)
299 PRK10419 nikE nickel transport 100.0 1.8E-37 3.9E-42 345.9 23.9 221 383-610 3-242 (268)
300 PRK11248 tauB taurine transpor 100.0 1.3E-37 2.9E-42 344.0 22.2 207 384-605 2-216 (255)
301 TIGR02142 modC_ABC molybdenum 100.0 1.8E-37 3.9E-42 358.4 24.2 214 388-613 4-225 (354)
302 cd03233 ABC_PDR_domain1 The pl 100.0 1.8E-37 3.9E-42 331.0 21.5 191 383-602 3-202 (202)
303 cd03228 ABCC_MRP_Like The MRP 100.0 2E-37 4.3E-42 321.9 21.0 171 384-597 1-171 (171)
304 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-37 3.9E-42 336.5 21.0 208 384-598 2-219 (220)
305 cd03230 ABC_DR_subfamily_A Thi 100.0 2E-37 4.3E-42 322.5 20.2 170 384-598 1-173 (173)
306 TIGR02323 CP_lyasePhnK phospho 100.0 3.7E-37 8.1E-42 341.7 23.7 224 383-616 3-245 (253)
307 PRK10418 nikD nickel transport 100.0 4.2E-37 9E-42 340.9 24.0 216 383-612 4-233 (254)
308 cd03229 ABC_Class3 This class 100.0 3.5E-37 7.7E-42 322.2 20.0 172 384-597 1-178 (178)
309 cd03297 ABC_ModC_molybdenum_tr 100.0 5.4E-37 1.2E-41 331.4 22.0 202 388-602 5-214 (214)
310 cd03223 ABCD_peroxisomal_ALDP 100.0 5.4E-37 1.2E-41 316.4 20.6 163 384-596 1-163 (166)
311 cd03213 ABCG_EPDR ABCG transpo 100.0 4.8E-37 1E-41 325.5 20.6 183 383-602 3-194 (194)
312 COG1123 ATPase components of v 100.0 6.1E-37 1.3E-41 354.0 23.1 227 382-619 279-529 (539)
313 TIGR03740 galliderm_ABC gallid 100.0 6.1E-37 1.3E-41 333.3 21.7 205 384-606 1-210 (223)
314 COG0444 DppD ABC-type dipeptid 100.0 9.2E-37 2E-41 328.7 21.5 228 384-619 2-253 (316)
315 cd03215 ABC_Carb_Monos_II This 100.0 6.3E-37 1.4E-41 321.6 19.8 172 383-598 4-182 (182)
316 COG0411 LivG ABC-type branched 100.0 4.3E-37 9.2E-42 316.7 17.8 220 384-611 5-241 (250)
317 cd03232 ABC_PDR_domain2 The pl 100.0 7E-37 1.5E-41 323.9 20.1 182 383-602 3-192 (192)
318 cd03217 ABC_FeS_Assembly ABC-t 100.0 2E-36 4.4E-41 322.6 22.0 185 384-608 1-192 (200)
319 TIGR03608 L_ocin_972_ABC putat 100.0 8.3E-37 1.8E-41 328.4 18.6 198 386-593 1-206 (206)
320 PRK15056 manganese/iron transp 100.0 2.2E-36 4.7E-41 338.2 22.7 210 383-609 6-230 (272)
321 CHL00131 ycf16 sulfate ABC tra 100.0 3E-36 6.4E-41 334.5 23.5 218 383-607 7-239 (252)
322 PRK09580 sufC cysteine desulfu 100.0 3.1E-36 6.8E-41 333.6 22.4 218 384-607 2-233 (248)
323 PRK03695 vitamin B12-transport 100.0 4.3E-36 9.3E-41 331.1 22.9 210 385-609 2-222 (248)
324 TIGR02770 nickel_nikD nickel i 100.0 2.9E-36 6.2E-41 329.2 21.3 206 401-615 1-221 (230)
325 COG4181 Predicted ABC-type tra 100.0 1.4E-36 3.1E-41 291.4 16.0 210 383-600 6-226 (228)
326 COG4598 HisP ABC-type histidin 100.0 1E-36 2.3E-41 294.1 15.1 219 383-613 6-245 (256)
327 cd03214 ABC_Iron-Siderophores_ 100.0 2.2E-36 4.8E-41 316.8 19.0 177 385-602 1-180 (180)
328 PRK09544 znuC high-affinity zi 100.0 1E-35 2.3E-40 327.5 23.8 208 383-619 4-217 (251)
329 COG4559 ABC-type hemin transpo 100.0 5.3E-36 1.1E-40 298.4 18.8 213 384-610 2-231 (259)
330 cd03231 ABC_CcmA_heme_exporter 100.0 1.2E-35 2.6E-40 317.1 22.5 195 384-593 1-198 (201)
331 TIGR01184 ntrCD nitrate transp 100.0 8.2E-36 1.8E-40 325.2 21.6 194 402-607 1-202 (230)
332 cd03216 ABC_Carb_Monos_I This 100.0 9.4E-36 2E-40 306.1 20.7 159 384-600 1-162 (163)
333 PRK10261 glutathione transport 100.0 1E-35 2.2E-40 369.1 24.9 228 383-617 313-561 (623)
334 cd03267 ABC_NatA_like Similar 100.0 5.7E-36 1.2E-40 327.8 19.5 196 399-602 34-236 (236)
335 COG4172 ABC-type uncharacteriz 100.0 1.4E-35 3.1E-40 320.2 21.5 227 381-618 274-525 (534)
336 PRK13540 cytochrome c biogenes 100.0 1.5E-35 3.3E-40 316.2 20.5 194 384-592 2-198 (200)
337 COG4525 TauB ABC-type taurine 100.0 1.1E-35 2.3E-40 291.6 17.2 210 384-604 4-219 (259)
338 PRK13538 cytochrome c biogenes 100.0 2.2E-35 4.8E-40 316.0 21.1 195 384-593 2-202 (204)
339 KOG0060 Long-chain acyl-CoA tr 100.0 8.3E-33 1.8E-37 312.2 40.4 417 165-595 186-641 (659)
340 PRK15134 microcin C ABC transp 100.0 4.1E-35 9E-40 359.2 22.1 221 383-611 275-517 (529)
341 COG4608 AppF ABC-type oligopep 100.0 3.5E-35 7.6E-40 310.0 18.4 197 383-619 4-209 (268)
342 PRK13543 cytochrome c biogenes 100.0 9.6E-35 2.1E-39 313.4 22.2 196 383-595 11-212 (214)
343 TIGR01189 ccmA heme ABC export 100.0 5.6E-35 1.2E-39 311.6 19.8 193 384-592 1-197 (198)
344 COG4604 CeuD ABC-type enteroch 100.0 1.2E-35 2.5E-40 292.1 12.6 221 384-610 2-226 (252)
345 PRK13539 cytochrome c biogenes 100.0 1E-34 2.2E-39 311.4 21.2 195 383-595 2-200 (207)
346 TIGR00955 3a01204 The Eye Pigm 100.0 2.4E-35 5.2E-40 365.4 18.1 203 398-608 37-255 (617)
347 PRK13546 teichoic acids export 100.0 1.4E-34 2.9E-39 320.2 22.0 208 383-610 4-233 (264)
348 COG4161 ArtP ABC-type arginine 100.0 6.1E-35 1.3E-39 276.7 15.8 219 383-616 2-237 (242)
349 PLN03211 ABC transporter G-25; 100.0 1.3E-34 2.8E-39 357.8 22.1 202 399-609 81-296 (659)
350 PRK13545 tagH teichoic acids e 100.0 3.1E-34 6.8E-39 333.0 23.7 208 383-610 21-233 (549)
351 TIGR02324 CP_lyasePhnL phospho 100.0 1.6E-34 3.5E-39 314.6 20.1 203 384-593 2-222 (224)
352 COG4148 ModC ABC-type molybdat 100.0 7.8E-35 1.7E-39 301.0 16.3 197 404-611 16-220 (352)
353 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-34 3.6E-39 353.4 22.3 220 383-609 279-517 (520)
354 PRK13549 xylose transporter AT 100.0 1.5E-34 3.2E-39 352.3 21.4 218 383-607 259-492 (506)
355 PRK10535 macrolide transporter 100.0 2.8E-34 6.1E-39 357.4 23.9 219 383-608 4-231 (648)
356 TIGR03771 anch_rpt_ABC anchore 100.0 2.2E-34 4.8E-39 312.4 19.8 186 407-609 1-201 (223)
357 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.1E-34 4.6E-39 312.6 19.1 197 384-602 23-224 (224)
358 TIGR01166 cbiO cobalt transpor 100.0 1.5E-34 3.3E-39 306.2 17.5 174 399-583 5-189 (190)
359 PRK13541 cytochrome c biogenes 100.0 3.1E-34 6.7E-39 304.9 19.6 189 384-591 2-193 (195)
360 TIGR01257 rim_protein retinal- 100.0 1.6E-32 3.5E-37 362.0 36.7 220 382-610 1936-2160(2272)
361 TIGR02633 xylG D-xylose ABC tr 100.0 9.1E-34 2E-38 345.5 21.5 217 383-606 257-489 (500)
362 PRK09700 D-allose transporter 100.0 1.4E-33 3.1E-38 344.3 22.8 210 383-604 265-493 (510)
363 TIGR01187 potA spermidine/putr 100.0 1.3E-33 2.9E-38 322.4 19.9 190 417-615 1-196 (325)
364 PRK10762 D-ribose transporter 100.0 1.7E-33 3.6E-38 342.7 21.2 210 383-607 257-482 (501)
365 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.9E-33 8.4E-38 305.6 19.9 193 391-608 1-206 (246)
366 TIGR00956 3a01205 Pleiotropic 100.0 2.2E-33 4.7E-38 372.7 21.5 213 383-606 759-990 (1394)
367 PRK11288 araG L-arabinose tran 100.0 3E-33 6.6E-38 340.4 20.7 212 383-608 257-484 (501)
368 COG4615 PvdE ABC-type sideroph 100.0 3.6E-30 7.9E-35 277.2 41.3 405 766-1188 53-468 (546)
369 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 5.8E-33 1.3E-37 278.8 17.9 143 384-597 1-144 (144)
370 PRK15064 ABC transporter ATP-b 100.0 1.2E-32 2.5E-37 337.6 23.4 201 383-610 319-526 (530)
371 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.6E-33 1.4E-37 304.8 17.4 201 387-602 4-220 (255)
372 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-32 2.4E-37 335.5 21.0 211 383-608 268-491 (510)
373 COG1101 PhnK ABC-type uncharac 100.0 1E-32 2.2E-37 275.6 16.3 202 398-601 18-230 (263)
374 PRK15177 Vi polysaccharide exp 100.0 2.6E-32 5.6E-37 293.4 18.8 185 401-608 2-191 (213)
375 COG4167 SapF ABC-type antimicr 100.0 3E-32 6.4E-37 263.9 14.7 218 384-612 5-242 (267)
376 PRK10982 galactose/methyl gala 100.0 7E-32 1.5E-36 327.9 21.6 211 383-605 250-476 (491)
377 PRK10938 putative molybdenum t 100.0 4.1E-32 8.9E-37 330.2 19.2 208 383-601 260-484 (490)
378 COG4152 ABC-type uncharacteriz 100.0 4.2E-32 9.2E-37 276.0 13.4 214 383-610 2-220 (300)
379 PLN03073 ABC transporter F fam 100.0 2.5E-31 5.3E-36 330.1 22.7 200 382-607 507-712 (718)
380 COG4136 ABC-type uncharacteriz 100.0 1.2E-31 2.6E-36 251.6 14.9 195 383-593 2-207 (213)
381 cd03222 ABC_RNaseL_inhibitor T 100.0 1.4E-31 3E-36 275.9 16.9 145 387-599 4-151 (177)
382 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.9E-31 6.3E-36 272.0 18.8 154 386-597 2-157 (157)
383 PRK10636 putative ABC transpor 100.0 3.1E-31 6.7E-36 329.1 22.5 199 383-608 312-516 (638)
384 PRK11819 putative ABC transpor 100.0 3.7E-31 8.1E-36 325.2 22.4 202 382-610 323-534 (556)
385 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.8E-31 1E-35 324.3 23.0 200 383-609 322-531 (552)
386 KOG0927 Predicted transporter 100.0 2.7E-30 5.9E-35 289.9 26.4 215 382-610 74-310 (614)
387 COG1119 ModF ABC-type molybden 100.0 8.4E-31 1.8E-35 270.0 19.3 211 382-603 30-256 (257)
388 PRK11147 ABC transporter ATPas 100.0 6.9E-31 1.5E-35 327.2 22.1 198 383-607 319-526 (635)
389 cd03238 ABC_UvrA The excision 100.0 6.9E-31 1.5E-35 270.4 18.2 155 399-598 8-166 (176)
390 PLN03140 ABC transporter G fam 100.0 1.6E-30 3.5E-35 343.4 24.5 214 383-606 867-1107(1470)
391 PRK13409 putative ATPase RIL; 100.0 1.1E-30 2.3E-35 319.1 21.0 192 383-603 340-536 (590)
392 COG4674 Uncharacterized ABC-ty 100.0 7.8E-31 1.7E-35 257.7 15.6 215 383-611 5-237 (249)
393 KOG0065 Pleiotropic drug resis 100.0 8E-29 1.7E-33 305.1 36.5 206 399-609 128-351 (1391)
394 COG0396 sufC Cysteine desulfur 100.0 8.1E-30 1.8E-34 259.1 20.2 215 383-609 3-233 (251)
395 COG1134 TagH ABC-type polysacc 100.0 1.3E-29 2.9E-34 261.9 19.6 187 399-609 40-236 (249)
396 KOG0064 Peroxisomal long-chain 100.0 6.8E-25 1.5E-29 244.2 44.8 437 132-593 182-681 (728)
397 COG4586 ABC-type uncharacteriz 100.0 1E-28 2.2E-33 255.7 13.0 201 400-610 38-247 (325)
398 COG4107 PhnK ABC-type phosphon 100.0 4.3E-28 9.2E-33 233.2 16.2 227 383-619 6-251 (258)
399 KOG0061 Transporter, ABC super 100.0 2.1E-28 4.6E-33 299.3 18.0 220 382-609 24-260 (613)
400 PF00005 ABC_tran: ABC transpo 100.0 5.6E-29 1.2E-33 249.2 10.6 136 402-551 1-137 (137)
401 COG0488 Uup ATPase components 99.9 6.3E-27 1.4E-31 277.7 23.8 203 382-610 320-526 (530)
402 COG4178 ABC-type uncharacteriz 99.9 6.8E-24 1.5E-28 249.1 45.8 390 764-1170 89-508 (604)
403 COG4133 CcmA ABC-type transpor 99.9 2.7E-27 5.8E-32 233.1 12.9 188 384-586 3-195 (209)
404 cd03270 ABC_UvrA_I The excisio 99.9 7E-27 1.5E-31 253.5 17.3 193 398-602 7-226 (226)
405 cd03271 ABC_UvrA_II The excisi 99.9 1.3E-26 2.8E-31 252.9 16.7 193 401-604 10-261 (261)
406 PRK00635 excinuclease ABC subu 99.9 1.1E-25 2.5E-30 292.9 26.7 210 383-608 600-905 (1809)
407 cd03278 ABC_SMC_barmotin Barmo 99.9 2.1E-26 4.6E-31 243.6 13.3 164 403-595 14-190 (197)
408 cd03289 ABCC_CFTR2 The CFTR su 99.9 2.4E-26 5.3E-31 255.1 13.9 132 1041-1176 1-132 (275)
409 KOG0062 ATPase component of AB 99.9 5.7E-26 1.2E-30 254.0 12.6 197 382-607 79-283 (582)
410 COG4778 PhnL ABC-type phosphon 99.9 4.2E-25 9E-30 212.2 11.8 202 384-594 5-226 (235)
411 KOG0059 Lipid exporter ABCA1 a 99.9 6.9E-25 1.5E-29 280.4 17.3 216 382-610 563-788 (885)
412 cd03279 ABC_sbcCD SbcCD and ot 99.9 6.7E-25 1.5E-29 236.3 11.6 192 383-598 5-211 (213)
413 PF00664 ABC_membrane: ABC tra 99.9 1.4E-21 3E-26 218.7 37.8 273 722-996 2-275 (275)
414 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.2E-24 4.7E-29 238.2 12.9 191 384-594 4-234 (243)
415 COG4138 BtuD ABC-type cobalami 99.9 1.1E-24 2.3E-29 210.2 7.0 208 384-610 4-222 (248)
416 KOG0927 Predicted transporter 99.9 2.3E-24 5E-29 242.6 9.6 198 383-605 389-592 (614)
417 COG1129 MglA ABC-type sugar tr 99.9 3.2E-23 7E-28 239.0 18.3 213 383-604 263-485 (500)
418 cd03240 ABC_Rad50 The catalyti 99.9 1.2E-23 2.5E-28 224.1 11.4 163 405-595 16-197 (204)
419 COG2884 FtsE Predicted ATPase 99.9 6E-24 1.3E-28 209.3 8.2 128 1043-1172 2-138 (223)
420 PRK00349 uvrA excinuclease ABC 99.9 3.5E-22 7.6E-27 251.5 21.5 102 511-612 818-930 (943)
421 cd03273 ABC_SMC2_euk Eukaryoti 99.9 5.4E-23 1.2E-27 227.5 12.0 182 412-594 25-242 (251)
422 COG1117 PstB ABC-type phosphat 99.9 4.5E-23 9.6E-28 206.9 9.3 122 1042-1166 7-140 (253)
423 PRK14257 phosphate ABC transpo 99.9 8.4E-23 1.8E-27 232.9 12.6 124 1038-1162 76-212 (329)
424 COG1125 OpuBA ABC-type proline 99.9 4E-23 8.8E-28 212.3 8.7 127 1043-1172 2-136 (309)
425 KOG0065 Pleiotropic drug resis 99.9 4.3E-23 9.4E-28 254.9 10.7 199 398-606 803-1018(1391)
426 cd03244 ABCC_MRP_domain2 Domai 99.9 1.6E-22 3.4E-27 220.0 13.9 133 1041-1176 1-133 (221)
427 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.2E-23 6.9E-28 221.8 8.0 184 383-595 5-204 (212)
428 cd03288 ABCC_SUR2 The SUR doma 99.9 3.4E-22 7.3E-27 222.0 14.1 135 1039-1176 16-150 (257)
429 COG1126 GlnQ ABC-type polar am 99.9 2E-22 4.2E-27 203.6 10.5 128 1042-1172 2-137 (240)
430 cd03248 ABCC_TAP TAP, the Tran 99.9 7.8E-22 1.7E-26 215.2 14.1 137 1038-1175 7-143 (226)
431 cd03254 ABCC_Glucan_exporter_l 99.9 9E-22 1.9E-26 215.3 13.4 132 1041-1175 1-132 (229)
432 TIGR00630 uvra excinuclease AB 99.9 3.8E-21 8.2E-26 241.7 20.7 97 511-607 816-923 (924)
433 cd03252 ABCC_Hemolysin The ABC 99.9 9.5E-22 2.1E-26 216.2 13.3 131 1043-1175 1-131 (237)
434 KOG0066 eIF2-interacting prote 99.9 3.5E-21 7.5E-26 209.3 16.9 189 383-598 264-487 (807)
435 PF00664 ABC_membrane: ABC tra 99.9 1.9E-18 4.1E-23 193.3 39.8 267 63-332 3-270 (275)
436 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.5E-22 1.2E-26 218.6 9.1 183 413-595 23-233 (247)
437 COG3845 ABC-type uncharacteriz 99.9 1.6E-20 3.5E-25 211.5 20.9 214 382-606 256-489 (501)
438 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.3E-21 5.1E-26 213.2 13.5 133 1043-1176 1-133 (238)
439 COG3839 MalK ABC-type sugar tr 99.9 1.7E-21 3.6E-26 216.4 12.3 126 1042-1172 3-134 (338)
440 cd03245 ABCC_bacteriocin_expor 99.9 3.6E-21 7.9E-26 209.1 14.6 134 1041-1176 1-134 (220)
441 cd03253 ABCC_ATM1_transporter 99.9 2.4E-21 5.1E-26 213.0 13.3 131 1043-1176 1-131 (236)
442 cd03251 ABCC_MsbA MsbA is an e 99.8 4.2E-21 9.1E-26 210.7 13.8 131 1043-1175 1-131 (234)
443 KOG0066 eIF2-interacting prote 99.8 8.2E-21 1.8E-25 206.4 15.4 190 383-598 586-779 (807)
444 COG3842 PotA ABC-type spermidi 99.8 2.7E-21 5.8E-26 216.0 11.3 134 1042-1180 5-149 (352)
445 COG1135 AbcC ABC-type metal io 99.8 3E-21 6.4E-26 205.2 10.4 129 1043-1171 2-141 (339)
446 cd03250 ABCC_MRP_domain1 Domai 99.8 5.5E-21 1.2E-25 205.0 12.6 119 1043-1176 1-121 (204)
447 KOG0062 ATPase component of AB 99.8 9.3E-21 2E-25 212.5 14.7 194 382-600 361-559 (582)
448 cd03369 ABCC_NFT1 Domain 2 of 99.8 2.4E-21 5.2E-26 208.3 9.4 136 1040-1181 4-139 (207)
449 KOG0060 Long-chain acyl-CoA tr 99.8 1.6E-18 3.4E-23 197.3 32.2 341 824-1176 186-563 (659)
450 PRK13650 cbiO cobalt transport 99.8 6.7E-21 1.4E-25 213.8 12.2 129 1042-1170 4-139 (279)
451 COG3638 ABC-type phosphate/pho 99.8 8.2E-21 1.8E-25 194.5 11.5 135 1042-1178 3-158 (258)
452 COG1120 FepC ABC-type cobalami 99.8 5.9E-21 1.3E-25 204.1 10.7 136 1043-1181 3-152 (258)
453 COG1122 CbiO ABC-type cobalt t 99.8 9.2E-21 2E-25 203.2 12.1 138 1042-1181 3-152 (235)
454 TIGR00960 3a0501s02 Type II (G 99.8 6.3E-21 1.4E-25 206.5 11.0 137 1043-1180 2-151 (216)
455 COG4170 SapD ABC-type antimicr 99.8 2.1E-20 4.6E-25 185.5 12.8 226 385-618 5-257 (330)
456 TIGR02314 ABC_MetN D-methionin 99.8 8.6E-21 1.9E-25 216.6 11.1 138 1043-1180 2-153 (343)
457 COG3840 ThiQ ABC-type thiamine 99.8 9.3E-21 2E-25 185.0 8.9 123 1043-1172 2-130 (231)
458 PRK13647 cbiO cobalt transport 99.8 1.4E-20 3.1E-25 210.5 11.6 127 1042-1170 4-137 (274)
459 COG1127 Ttg2A ABC-type transpo 99.8 1.7E-20 3.7E-25 192.7 10.1 136 1042-1180 8-158 (263)
460 COG1245 Predicted ATPase, RNas 99.8 8.4E-20 1.8E-24 201.3 16.2 171 401-595 351-531 (591)
461 cd03290 ABCC_SUR1_N The SUR do 99.8 3.7E-20 8.1E-25 200.7 12.7 129 1044-1176 2-134 (218)
462 COG1116 TauB ABC-type nitrate/ 99.8 2.4E-20 5.1E-25 195.2 10.7 130 1042-1179 3-142 (248)
463 PRK13631 cbiO cobalt transport 99.8 2.7E-20 6E-25 211.7 11.9 139 1042-1180 21-189 (320)
464 cd03276 ABC_SMC6_euk Eukaryoti 99.8 5.3E-20 1.1E-24 195.0 13.3 172 402-597 12-192 (198)
465 PRK14269 phosphate ABC transpo 99.8 2.3E-20 5E-25 206.1 10.8 135 1042-1179 2-154 (246)
466 cd03261 ABC_Org_Solvent_Resist 99.8 2.4E-20 5.3E-25 204.6 10.9 136 1043-1181 1-150 (235)
467 PRK11629 lolD lipoprotein tran 99.8 2.8E-20 6.1E-25 203.8 11.3 139 1042-1180 5-158 (233)
468 PRK13635 cbiO cobalt transport 99.8 3E-20 6.5E-25 208.4 11.7 127 1043-1170 6-139 (279)
469 cd03260 ABC_PstB_phosphate_tra 99.8 2.4E-20 5.2E-25 203.6 10.6 136 1043-1181 1-155 (227)
470 cd03266 ABC_NatA_sodium_export 99.8 3.9E-20 8.5E-25 200.7 11.9 138 1043-1181 2-150 (218)
471 PRK14250 phosphate ABC transpo 99.8 4.5E-20 9.7E-25 203.1 12.1 137 1042-1181 3-145 (241)
472 TIGR02673 FtsE cell division A 99.8 3.6E-20 7.7E-25 200.4 10.9 137 1043-1181 2-151 (214)
473 PRK13632 cbiO cobalt transport 99.8 4.7E-20 1E-24 206.4 11.5 137 1042-1179 7-154 (271)
474 cd03226 ABC_cobalt_CbiO_domain 99.8 3.4E-20 7.4E-25 199.0 9.9 133 1044-1181 1-140 (205)
475 PRK13642 cbiO cobalt transport 99.8 6.1E-20 1.3E-24 206.0 12.3 140 1042-1181 4-154 (277)
476 PRK13646 cbiO cobalt transport 99.8 4.2E-20 9.2E-25 208.1 11.1 137 1043-1179 3-157 (286)
477 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 3.7E-20 8E-25 200.9 10.2 139 1043-1181 1-154 (218)
478 PRK13643 cbiO cobalt transport 99.8 3.3E-20 7.2E-25 209.0 10.2 137 1043-1179 2-156 (288)
479 PRK13637 cbiO cobalt transport 99.8 4.7E-20 1E-24 207.7 11.3 137 1043-1179 3-156 (287)
480 cd03292 ABC_FtsE_transporter F 99.8 4.8E-20 1E-24 199.5 10.8 136 1043-1180 1-149 (214)
481 cd03264 ABC_drug_resistance_li 99.8 5.1E-20 1.1E-24 198.7 10.8 134 1043-1181 1-144 (211)
482 cd03263 ABC_subfamily_A The AB 99.8 5.6E-20 1.2E-24 199.8 11.2 137 1043-1181 1-147 (220)
483 PRK10575 iron-hydroxamate tran 99.8 6.7E-20 1.5E-24 204.6 11.4 136 1042-1180 11-160 (265)
484 cd03268 ABC_BcrA_bacitracin_re 99.8 6.6E-20 1.4E-24 197.3 10.9 134 1043-1181 1-140 (208)
485 PRK10908 cell division protein 99.8 7.6E-20 1.6E-24 198.9 11.1 136 1043-1180 2-150 (222)
486 cd03258 ABC_MetN_methionine_tr 99.8 8E-20 1.7E-24 200.4 11.4 139 1043-1181 2-154 (233)
487 cd03225 ABC_cobalt_CbiO_domain 99.8 6.6E-20 1.4E-24 197.9 10.5 137 1044-1181 1-148 (211)
488 COG1136 SalX ABC-type antimicr 99.8 1.4E-19 2.9E-24 189.9 12.4 137 1043-1179 2-154 (226)
489 PRK13640 cbiO cobalt transport 99.8 1.3E-19 2.9E-24 203.7 13.3 129 1041-1170 4-142 (282)
490 PRK13652 cbiO cobalt transport 99.8 9.3E-20 2E-24 204.5 11.9 126 1043-1170 4-136 (277)
491 PRK13540 cytochrome c biogenes 99.8 1.1E-19 2.5E-24 193.9 12.0 134 1043-1180 2-140 (200)
492 cd03256 ABC_PhnC_transporter A 99.8 1E-19 2.2E-24 200.8 11.8 137 1043-1181 1-158 (241)
493 PRK10247 putative ABC transpor 99.8 1.5E-19 3.2E-24 196.8 12.8 137 1042-1181 7-151 (225)
494 TIGR02315 ABC_phnC phosphonate 99.8 1.2E-19 2.5E-24 200.5 12.1 138 1043-1182 2-160 (243)
495 cd03259 ABC_Carb_Solutes_like 99.8 6.1E-20 1.3E-24 198.3 9.6 134 1043-1181 1-144 (213)
496 PRK10584 putative ABC transpor 99.8 1.3E-19 2.9E-24 197.9 12.1 139 1042-1180 6-159 (228)
497 cd03231 ABC_CcmA_heme_exporter 99.8 1.6E-19 3.5E-24 192.9 12.3 133 1043-1180 1-138 (201)
498 PRK11432 fbpC ferric transport 99.8 6.2E-20 1.3E-24 210.8 9.8 132 1042-1178 6-147 (351)
499 TIGR02211 LolD_lipo_ex lipopro 99.8 1.2E-19 2.6E-24 197.4 11.4 139 1043-1181 2-155 (221)
500 PRK11153 metN DL-methionine tr 99.8 9.8E-20 2.1E-24 209.7 11.3 139 1043-1181 2-154 (343)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.4e-178 Score=1616.02 Aligned_cols=1109 Identities=56% Similarity=0.916 Sum_probs=1008.2
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
..+++++|+|..++++.+++++++++++.++.+|++.+++|++.+.+....+. ...+....++++++++|++.+++.|+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~lg~~~~~~~~~ 90 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-IASSEVSKVALYFVYLGVGVFISGFI 90 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999988654432 22345667888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+..||++.+.|...++|..++++++|++++|||.. .+|++.+++++|++.|++.+++.+..+++.+.+++++++++|+.
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 67999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|+++++++.+.|++.+....+.+.+.+...+.++.++++.+...|++.++|||.+|+.|+...++|.+.++...+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
..++.++..++..++.++.+++.+|+|+.++..+..++|.++++++.++.....+++..|++..+..+..++.++++.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
..|+.++....+......+|.|+|+||+|+||++++.++|+|+||+|++|+++||||||||||||++++|.|+|+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 98887665433334455689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||.|+++++.+|+|++||.|.|+|.||++||+|||.||.|+++.+++.++|++++++++|..+|+|++|.+||+|.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||||||||+++|+||||||||||||+++++.+|++|++..++||+|+||||++++++||+|+||++|+|+|.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCC
Q 000984 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQ 682 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1198)
+|+||++.+ |.|.++++.|+.....++...+.+ . .+....+. .... ...+ .. +.. .. ...
T Consensus 570 ~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~--~--~~~~~~s~---~~s~--~~~~---~~-~~~-~~-~~~---- 629 (1228)
T KOG0055|consen 570 THDELIALG-GIYSSLVRLQELEKAAEDEEEEES--L--KEERSRSL---KSSS--SSPS---LS-RGS-NR-SNL---- 629 (1228)
T ss_pred CHHHHHhcc-chHHHHHHHHhhhhhhhccccccc--h--hhhhhhcc---cccc--cccc---cc-CCc-cc-ccc----
Confidence 999999985 999999999876554321000000 0 00000000 0000 0000 00 000 00 000
Q ss_pred CCcccCCCCCCCCCCCcccCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhhhhH
Q 000984 683 FADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSR 761 (1198)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 761 (1198)
.....+++.. ..+..+......+++++++.+|+|++++++.+++++.++..|++.+++++++..+..+++ .......
T Consensus 630 ~~~~~~~e~~--~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~ 707 (1228)
T KOG0055|consen 630 LSVKPEGEDP--EEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVR 707 (1228)
T ss_pred cccccccccc--ccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 0000000000 000011114567889999999999999999999999999999999999999999875433 2333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHH
Q 000984 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1198)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l 841 (1198)
.|.++|++++++..++.+++.+++..+++++..++|.++|+++++++++|||+++|+ |.|.+|+.+|...++..+.+.+
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl 786 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRL 786 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999888 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcch
Q 000984 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1198)
Q Consensus 842 ~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e 921 (1198)
..+++++..+++++++.++++|+|+++++++.|++++..+.+.+++....++.++...+++....|++++++||++|++|
T Consensus 787 ~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e 866 (1228)
T KOG0055|consen 787 SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAE 866 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhh
Q 000984 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1198)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~ 1001 (1198)
+++.+.|.+.++...+...+...+.+..+++++.+.++.+++++|+|++++.+|.+++.+++.++..+.+....+++...
T Consensus 867 ~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s 946 (1228)
T KOG0055|consen 867 EKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASS 946 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCC
Q 000984 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081 (1198)
Q Consensus 1002 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SG 1081 (1198)
+.+++.++..|+.++++++|++|.+++..+.+...+..+|+|+|+||+|+||+||+.+||+|+||+|++||+||||||||
T Consensus 947 ~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 947 YAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred hCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCC
Confidence 99999999999999999999999776654334445668999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcch
Q 000984 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161 (1198)
Q Consensus 1082 SGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l 1161 (1198)
|||||++.||.|||||++|.|.|||+||+++++++||++|++|.|||.||++||||||.||.. ++|++||.+|||.||+
T Consensus 1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999943 5999999999999999
Q ss_pred HHHHHhccccccceee
Q 000984 1162 HKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1162 ~dfI~~LP~g~dt~v~ 1177 (1198)
|+||.+||+||||+|-
T Consensus 1106 H~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVG 1121 (1228)
T ss_pred HHHHhcCcCcccCccC
Confidence 9999999999999984
No 2
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.2e-143 Score=1416.58 Aligned_cols=1120 Identities=28% Similarity=0.462 Sum_probs=911.7
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1198)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1198)
.++++..+|+|+.+.++.+++++++++++.+++.|+++++++.+++.+... +....+++.+++++++.+++.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-------~~~~~~~~~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-------ENVNDIIFSLVLIGIFQFILSF 115 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999988999999999999999999999999999976321 1122334556677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
++.+++.+.+.++..++|..++++++++|++|||.. +.|+++++++.|++.+++.+...+..++..+..++++++++++
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975 8899999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
++|.+++++++++|+++++..++.+..++..+..++..++..+.+.|+++|+++||+|+.|+.+.++|.+......+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888888888899999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~--------~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1198)
+.....++..++..++.++.+++.+|+|+.++..+ .++++.++++++..+.....+..+.+.+..+..+..+
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777778888899999999998875 4788888877766666666667777888899999999
Q ss_pred HHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
+.|+++.++.+++.++.. .+...+. .+.|+++||+|+||++++.++|+|+||+|++||+++||||||||||||+++|+
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999998776543211 1111112 24799999999998655557999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEE-CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC---------------------------
Q 000984 434 RFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--------------------------- 485 (1198)
Q Consensus 434 g~~~~~~G~i~i-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--------------------------- 485 (1198)
|+|+|++|+|.+ ||+|+++++.+++|++|+||+|+|.||++||+|||.+|..
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 5799999999999999999999999999999999998742
Q ss_pred ------------------------------CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 486 ------------------------------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 486 ------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+.++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 24568899999999999999999999999999999999999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCC-----------------
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRG----------------- 596 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G----------------- 596 (1198)
|++++|+|||||||||+||+++++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999886 479999999999999999999999986
Q ss_pred ------------------------------EEEEecChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhh
Q 000984 597 ------------------------------KIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLR 646 (1198)
Q Consensus 597 ------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1198)
+|+|+|+|+||++..++.|+.+++.|........................
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYK 752 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccc
Confidence 59999999999986689999999877543221100000000000000000
Q ss_pred cccccccccccccCCCCCCCCCCcccccccCCCCCCCCcccCCCCCCCCCCCc----ccCCcchhHhhhhhcCChhHHHH
Q 000984 647 HSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTE----EVAPEVPTRRLAYLNKPEIPVIL 722 (1198)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 722 (1198)
.................. ..... .... .....................+ ........++++++.+++++.++
T Consensus 753 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1466)
T PTZ00265 753 DSERGYDPDEMNGNSKHE-NESAS--NKKS-CKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT 828 (1466)
T ss_pred cccccccccccccccccc-ccccc--cccc-cccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH
Confidence 000000000000000000 00000 0000 0000000000000000000000 00011123334444455666688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFE 802 (1198)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 802 (1198)
++++++++.+++.|+++++++.+++.++.. .........|.+++++++++.+++.+++.++..+++.++..++|.++|+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~ 907 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFE 907 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999977532 1112224456777778888888999999999999999999999999999
Q ss_pred HHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000984 803 KVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882 (1198)
Q Consensus 803 ~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~ 882 (1198)
+++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++..+...
T Consensus 908 ~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 987 (1466)
T PTZ00265 908 NILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAI 987 (1466)
T ss_pred HHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999656899999999999999999999999999999999999999999999999988876555444333222
Q ss_pred HHHHHhhhH-H-H-------------HHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHh
Q 000984 883 QMKFMKGFS-A-D-------------AKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1198)
Q Consensus 883 ~~~~~~~~~-~-~-------------~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1198)
..+...... + . .++..++.+..++|++.|+++||+|+.|+++.++|.+..+...+...+.....+
T Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1466)
T PTZ00265 988 RARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNS 1067 (1466)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111000 0 0 123355678899999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCC
Q 000984 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1198)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 1027 (1198)
...++...+..+..++++|+|++++..|.+++|++++++.+..+...++..+..+..+++++..+++|++++++.+++.+
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~ 1147 (1466)
T PTZ00265 1068 MLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNID 1147 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 89999998888889999999999999999999999998877776667788899999999999999999999999876442
Q ss_pred CCCCCCCc---ccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-------
Q 000984 1028 PSDESGTI---LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP------- 1097 (1198)
Q Consensus 1028 ~~~~~~~~---~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp------- 1097 (1198)
..+..... ++...|.|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||||++||+|||||
T Consensus 1148 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~ 1227 (1466)
T PTZ00265 1148 VRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227 (1466)
T ss_pred CCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccc
Confidence 21111111 12346889999999999876666899999999999999999999999999999999999999
Q ss_pred -----------------------------------------------CCCeEEECCcccCCCChHHHHhhcceecccccc
Q 000984 1098 -----------------------------------------------DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1198)
Q Consensus 1098 -----------------------------------------------~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1198)
++|+|+|||+||+++++++||++|++|||||+|
T Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1228 FKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc
Confidence 699999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1131 F~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|+|||||||+||+ +++|||||++||+.|++||||++||+||||.|-
T Consensus 1308 F~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VG 1353 (1466)
T PTZ00265 1308 FNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVG 1353 (1466)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccC
Confidence 9999999999995 479999999999999999999999999999873
No 3
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.3e-145 Score=1360.81 Aligned_cols=995 Identities=22% Similarity=0.268 Sum_probs=766.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhh---ccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 127 WMITGERQATRIRGLYLKTILRQDVAFFD---NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~---~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
+.+...+.+.++|..+...++++.+..-. ...+.|+|+|.|++|++++++........|...+..+++...+...++
T Consensus 262 ~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG 341 (1381)
T KOG0054|consen 262 YFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG 341 (1381)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566899999999887777776654321 124799999999999999999887666666666665565556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
|. +++.++++.+++.+..++.+..++.+.+.++..++|.+.++|.++|||+||+|+||+.|.+++.+.++++.+...+.
T Consensus 342 ~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~ 420 (1381)
T KOG0054|consen 342 PS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS 420 (1381)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 45555566677778888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKL-ILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
.+..++...+..+...++.+ +.++.+. ...+.+++..+|+.+..+.....++..++..+..+.++.++.+|+.+++.
T Consensus 421 ~~~~~~~~~~~~~~p~lv~~--~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~ 498 (1381)
T KOG0054|consen 421 AYLSALNSFLNFFSPVLVSV--VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLL 498 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88877666554333222221 1222222 33556788788887777766777888877789999999999999999997
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.++ .++......+..+.+..|+++|.+|+|+....++.|+||||+|++|+++||||++|||||||+++|+|++++.+|+
T Consensus 499 ~~e-~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~ 577 (1381)
T KOG0054|consen 499 SEE-LDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS 577 (1381)
T ss_pred Ccc-cCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccce
Confidence 643 3322221112223345699999999997644456999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
+.++| .++||||+||||+|||||||+||.| +++++++++.+.|+|.+|++.||.||.|+|||+|.|
T Consensus 578 v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGin 643 (1381)
T KOG0054|consen 578 VAVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGIN 643 (1381)
T ss_pred EEEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccC
Confidence 99999 7999999999999999999999987 789999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHH-HHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~-~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
|||||||||+||||+|+|+||||||||+||||+|+.+ .+.+||+.++++||+|+|||+++++++||+|++|++|+|.+.
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 9999999999999999999999999999999999866 567899999999999999999999999999999999999999
Q ss_pred cChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCC
Q 000984 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSG 681 (1198)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1198)
|+|+||++. +..|.++....+.+.+.+.... . ....+.... ........... .. +.
T Consensus 724 Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~------~~~~~~~~~~~-~~--~~---------- 779 (1381)
T KOG0054|consen 724 GTYEELLKS-GGDFAELAHEEESEQEEEASEK--D--LESGESSRE------SESRSLESLSS-EE--EK---------- 779 (1381)
T ss_pred cCHHHHHhc-chhHHHHhhccchhhccccccc--c--ccccccccc------hhhhhhhhhcc-cc--cc----------
Confidence 999999976 6677776332221111100000 0 000000000 00000000000 00 00
Q ss_pred CCCcccCCCCCCCCCCCcccCCcchhHhhhhhcCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhh
Q 000984 682 QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKP-E-IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKD 759 (1198)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1198)
... .+.......+.+++..+.+.++.++.|.+. + +..++..+++.+...++.....+|+++|.+.-...... ..+
T Consensus 780 ~~~--~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~-~~~ 856 (1381)
T KOG0054|consen 780 SKD--EKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT-TVS 856 (1381)
T ss_pred ccc--ccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-CCC
Confidence 000 000000000011112334444444444333 2 22222233444444455555666777776643211100 024
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHH
Q 000984 760 SRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839 (1198)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~ 839 (1198)
..++.++|.+++++..++..++.+++...+.++++.||++|+++++|+||+||| .+|+|||+|||++|++.+|..+|.
T Consensus 857 ~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~ 934 (1381)
T KOG0054|consen 857 TSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPF 934 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHH
Confidence 567889999999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHhchhHHH
Q 000984 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE----EASQVANDAVGSIRTV 915 (1198)
Q Consensus 840 ~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~E~l~gi~tI 915 (1198)
.+..++.+++.+++.++++.+..|++ +++++|+.+++ +++++++.+.+|+.++..+ ...+|+.|+++|+.||
T Consensus 935 ~~~~~~~~~~~~l~~~~vi~~~~P~f---li~~~pl~v~~-~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTI 1010 (1381)
T KOG0054|consen 935 TLEFFLQSLLNVLGILVVISYVTPWF---LIAIIPLGVIY-YFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTI 1010 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHH---HHHHHHHHHHH-HHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCccee
Confidence 99999999999999999999888864 44555655554 4455555566888877554 4589999999999999
Q ss_pred HHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Q 000984 916 ASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS-FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994 (1198)
Q Consensus 916 raf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~ 994 (1198)
|||++|++|.+++.+..|.+.+..+-..... .|+++. ..+..+...++..+. .+...+..+.|..-..+.|...+..
T Consensus 1011 RAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~-RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~ 1088 (1381)
T KOG0054|consen 1011 RAFGKEERFIQENDELIDENSRAFFLSISAN-RWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTG 1088 (1381)
T ss_pred eeccccHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999998766443332 233332 222222222222222 2222222556777777888888888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCC
Q 000984 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGK 1072 (1198)
Q Consensus 995 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~Ge 1072 (1198)
.+..+.....+.++.+.|+||+.+|.+.++|.+...+. +++.+|.+|+|+|+|++.+|.++ .++|||||||+|+|||
T Consensus 1089 ~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1089 LLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGE 1167 (1381)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCc
Confidence 88999999999999999999999999987763222211 34457789999999999999754 4579999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHH
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei 1152 (1198)
|||||||||||||||+++|+|+.||.+|+|.|||+||++++|++||+++++|||||+||+||+|+||++ .+++||+||
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP--f~e~sD~~I 1245 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP--FDEYSDDEI 1245 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc--ccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999965 568999999
Q ss_pred HHHHHHcchHHHHHhccccccceee
Q 000984 1153 QAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1153 ~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|+|+|+|+++++|+++|+|+|++|.
T Consensus 1246 W~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1246 WEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred HHHHHHhChHHHHhhCCcCCCceec
Confidence 9999999999999999999999874
No 4
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-130 Score=1307.00 Aligned_cols=982 Identities=18% Similarity=0.229 Sum_probs=714.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH
Q 000984 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IKGWLLT 207 (1198)
Q Consensus 129 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~l~ 207 (1198)
..+.++...++..+++++++.+...+++ .++|+++|++++|++++++.... +..++...+.++..+++++ .++|. +
T Consensus 367 ~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~-~ 443 (1622)
T PLN03130 367 RVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVA-S 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445555566667889999999998876 48999999999999999998743 3333333333333332222 23332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
++.++++.+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++.+.++++.+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333444455566777778888888889999999999999999999999999999999999888777666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000984 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1198)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1198)
++...+..... ..+.++++|.+++..+.++++.+++++..+.....++..++..+..+..+..+.+|+.+++..+++.
T Consensus 524 ~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 524 AFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 44332222111 1234455677777788999999988777666667788777778899999999999999998754332
Q ss_pred CccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-CeEEEC
Q 000984 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLID 446 (1198)
Q Consensus 368 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-G~i~i~ 446 (1198)
.... . ...+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+ |+|.+.
T Consensus 602 ~~~~--~-~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~ 678 (1622)
T PLN03130 602 LLPN--P-PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678 (1622)
T ss_pred cccC--C-cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc
Confidence 1111 1 11112346999999999986545679999999999999999999999999999999999999999 999865
Q ss_pred CeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
| +|+||+|+||||+|||||||+||.| +++++++++++.|+++++++.||+|++|.|||+|.+||||
T Consensus 679 ~-------------~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 679 G-------------TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred C-------------eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 4 8999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
|||||+||||+|++|+||||||||||||+++++.+ +++++..++++|+|+|||+++.++.||+|++|++|+|+++|+|+
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999998765 57788778899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCCCc
Q 000984 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD 685 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1198)
||+++ ++.|.++...+....+..+.... +. ..+ . . .. ........ ......... ...
T Consensus 825 eL~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~-~~~-~---~------~~-~~~~~~~~-~~~~~~~~~-------~~~- 881 (1622)
T PLN03130 825 ELSNN-GPLFQKLMENAGKMEEYVEENGE-EE-DDQ-T---S------SK-PVANGNAN-NLKKDSSSK-------KKS- 881 (1622)
T ss_pred HHHhc-chhHHHHHHhccccccccccccc-cc-ccc-c---c------cc-cccccccc-ccccccccc-------ccc-
Confidence 99976 67788877543211111000000 00 000 0 0 00 00000000 000000000 000
Q ss_pred ccCCCCCCCCCCCcccCCcchhHhhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 000984 686 TALGEPAGPSQPTEEVAPEVPTRRLAYLNKP--EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW 763 (1198)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1198)
... . ......+++..+.+.+..+.+|.+. ..+.+++.+++.++..++....++|++.|.+..... ......|
T Consensus 882 ~~~-~-~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~----~~~~~~~ 955 (1622)
T PLN03130 882 KEG-K-SVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK----THGPLFY 955 (1622)
T ss_pred ccc-c-hhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CCchhHH
Confidence 000 0 0000001111222334444444322 222222223333333444445556677666543211 1123456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHH
Q 000984 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALAR 843 (1198)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~ 843 (1198)
+++|++++++..++.+++.+++...+.++++++|++++++++++|++||| ++|+|+|+|||++|++.++..++..+..
T Consensus 956 ~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 956 NLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888899999999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHhchhHHHHHhc
Q 000984 844 IVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK----MKYEEASQVANDAVGSIRTVASFC 919 (1198)
Q Consensus 844 ~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~E~l~gi~tIraf~ 919 (1198)
++..++.+++.++++++++|...+ +++|+.++++... +++.+..++.+ ...+...+++.|+++|++|||+|+
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~~---~~~pl~~~~~~~~-~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~ 1109 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISLW---AIMPLLVLFYGAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1109 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCc
Confidence 999999999999888888874332 3333333322222 22223333333 344567899999999999999999
Q ss_pred chHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------cCHHHHHHHHHHHH
Q 000984 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGK---------ATFSDVFKVFFSLT 990 (1198)
Q Consensus 920 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~---------~t~g~l~~~~~~~~ 990 (1198)
.++++.+++.+..+...+..+..............+ +..+++++.+...+..+. .++|.+++ +..
T Consensus 1110 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~ 1183 (1622)
T PLN03130 1110 AYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YAL 1183 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHH
Confidence 999888888777776655433222211111111111 111222222333333321 23343333 444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCcccCCcccEEEeeeeEECCCCCCccccccceEEe
Q 000984 991 MTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDE--SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKI 1068 (1198)
Q Consensus 991 ~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I 1068 (1198)
.+..++..+......++..+.+++|+.++++.++|.+...+ .+++.++.+|.|+|+||+|+|+++ .++||+||||+|
T Consensus 1184 ~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I 1262 (1622)
T PLN03130 1184 NITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEI 1262 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEE
Confidence 55556666666777889999999999999988766432111 111223467899999999999643 347999999999
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDAT 1148 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~t 1148 (1198)
+||||||||||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ ++|
T Consensus 1263 ~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~t 1340 (1622)
T PLN03130 1263 SPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHN 1340 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 689
Q ss_pred HHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1149 EAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1149 deei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|||+|+||++|+++|||++||+||||+|
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~V 1368 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEV 1368 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccc
Confidence 9999999999999999999999999987
No 5
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.4e-129 Score=1294.65 Aligned_cols=985 Identities=18% Similarity=0.230 Sum_probs=715.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH
Q 000984 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IKGWLLT 207 (1198)
Q Consensus 129 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~l~ 207 (1198)
..+.++...++..+++++++.+...+++ .++|+++|++++|++++++... .+..++...+.++.++++++ .++|. +
T Consensus 367 ~~~~~ir~~l~~~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~~lg~~-~ 443 (1495)
T PLN03232 367 RVGFRLRSTLVAAIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQQLGVA-S 443 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHH-H
Confidence 4455555666668889999999988876 4899999999999999999753 23333333222222222211 11121 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
++.++++.+++++..++.+..++..++.++..+++.+.++|.++|+++||+|+||+.+.+++.+.++++.+...+.....
T Consensus 444 l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~ 523 (1495)
T PLN03232 444 LFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLS 523 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222333345566777888888888899999999999999999999999999999999999888887777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000984 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1198)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1198)
++...+.... ...+.++++|.+++..+.++++.+++++..+.....++..++..+..+..+..+.+|+.++++.+++.
T Consensus 524 ~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~ 601 (1495)
T PLN03232 524 AFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI 601 (1495)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 4433222111 11223456677777788899999998877776667778777778899999999999999999765432
Q ss_pred CccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 368 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.... ....+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+|.+.
T Consensus 602 ~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 602 LAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred cccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 2111 1111123469999999999864456899999999999999999999999999999999999999998763
Q ss_pred eecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 448 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
.+|++|+||+|+||||+|||||||+||.+ +++++++++++.|+++++++.+|+||+|.|||+|.+|||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 24679999999999999999999999986 78999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||||+||||+|++|+||||||||||||+++++.+ +++++...+++|+|+||||++.++.||+|++|++|+|++.|+|+|
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999998866 566777778999999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCCCcc
Q 000984 607 LVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADT 686 (1198)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1198)
++++ ++.|.++++.+...++..+ .. +..+ .... ....... ... . .. .. .....
T Consensus 826 L~~~-~~~~~~l~~~~~~~~~~~~-~~--~~~~----~~~~------~~~~~~~-~~~--~-~~-~~--------~~~~~ 878 (1495)
T PLN03232 826 LSKS-GSLFKKLMENAGKMDATQE-VN--TNDE----NILK------LGPTVTI-DVS--E-RN-LG--------STKQG 878 (1495)
T ss_pred HHhc-chhHHHHHHhccccccccc-cc--cccc----cccc------ccccccc-ccc--c-cc-cc--------ccccc
Confidence 9976 6788888764432111100 00 0000 0000 0000000 000 0 00 00 00000
Q ss_pred cCCCCCCCCCCCcccCCcchhHhhhhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH
Q 000984 687 ALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE--IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA 764 (1198)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1198)
.. ......+.+++..+.+.++.+++|.+.. ++.+.+.+++.++..++.....+|++.|.+.... .......|+
T Consensus 879 ~~-~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~----~~~~~~~~l 953 (1495)
T PLN03232 879 KR-GRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP----KSYSPGFYI 953 (1495)
T ss_pred cc-chhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CCCCcchHH
Confidence 00 0000000011112223344444444332 2222222233333333333344555555432110 011234678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHH
Q 000984 765 LIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARI 844 (1198)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~ 844 (1198)
++|++++++..++.+++.+++...+.++++++|++++++++++|++||| ++++|+|+|||++|++.++..++..+..+
T Consensus 954 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~ 1031 (1495)
T PLN03232 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMF 1031 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcch
Q 000984 845 VQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQM---KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1198)
Q Consensus 845 i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e 921 (1198)
+..++.+++.+++++++++...+ +++|+.+++..... +..+...+......+...+++.|+++|++|||+|+++
T Consensus 1032 ~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~ 1108 (1495)
T PLN03232 1032 MNQLWQLLSTFALIGTVSTISLW---AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAY 1108 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcH
Confidence 99998888888888777753322 23343333222222 2222233333445566789999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----CHHH-HHHHHHHHHHHHHH
Q 000984 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE-DGKA----TFSD-VFKVFFSLTMTAIG 995 (1198)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~g~~----t~g~-l~~~~~~~~~~~~~ 995 (1198)
+++.+++.+..+...+..+...... .+..... ..+..+++++.+...+. .+.+ .++. +..++.+...+..+
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~wl~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 1185 (1495)
T PLN03232 1109 DRMAKINGKSMDNNIRFTLANTSSN-RWLTIRL--ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTL 1185 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 9988888887776665544322221 1111111 11112222222333333 2322 1122 22345566667778
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCE
Q 000984 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKT 1073 (1198)
Q Consensus 996 l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~Gek 1073 (1198)
+..+......++.++.+++|+.++++.++|.+...+. .++.++.+|+|+|+||+|+|+++ .++||+|+||+|+||||
T Consensus 1186 l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gek 1264 (1495)
T PLN03232 1186 LSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEK 1264 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCE
Confidence 8888888999999999999999999887664321111 11123457899999999999643 34799999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHH
Q 000984 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQ 1153 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~ 1153 (1198)
||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ ++||||+|
T Consensus 1265 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~ 1342 (1495)
T PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLW 1342 (1495)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974 69999999
Q ss_pred HHHHHcchHHHHHhccccccceee
Q 000984 1154 AASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1154 ~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|+++|+++|||++||+||||+|.
T Consensus 1343 ~al~~a~l~~~I~~lp~GLdt~v~ 1366 (1495)
T PLN03232 1343 EALERAHIKDVIDRNPFGLDAEVS 1366 (1495)
T ss_pred HHHHHcCCHHHHHhCcCCCCceec
Confidence 999999999999999999999874
No 6
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.4e-125 Score=1259.17 Aligned_cols=1019 Identities=18% Similarity=0.200 Sum_probs=740.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHH
Q 000984 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IKGWL 205 (1198)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~ 205 (1198)
....+.++...++..+++++++.+...++.. ++|+++|++++|++++.+.... +..++...+.++.++++++ ..+|
T Consensus 382 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~ll~~~~g~- 458 (1522)
T TIGR00957 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLATY-INMIWSAPLQVILALYFLWLNLGP- 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 3345666667777788999999999988864 8999999999999999886543 2233333333333222222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
.+++.++++++++++..++.+..++..++.++..+++.+.+.|.++||++||+|+||+.+.+++.+.+.++.+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 538 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAY 538 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666677777888888888899999999999999999999999999999999999999888776655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLIL--EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~--~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1198)
...+.......... .+..+.++.+.+. .+.++.+.+++.+..+.....++..++..+..+..+..+.+|+.+++..
T Consensus 539 ~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 616 (1522)
T TIGR00957 539 LHAVGTFTWVCTPF--LVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616 (1522)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44332222111111 1112223334443 3457888888766555555667888888899999999999999999976
Q ss_pred CCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
+++...............+.|+++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 617 EELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred cccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 543211100000001112369999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
.+|| +|+||||+||+|++||||||.||.+ .++++++++++.|++.+++..+|+|++|.+|++|.+|
T Consensus 696 ~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~L 761 (1522)
T TIGR00957 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNL 761 (1522)
T ss_pred EECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCC
Confidence 9998 6999999999999999999999875 5678889999999999999999999999999999999
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHH---HHhCCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1198)
|||||||++||||+|++|+|+|||||||+||+++++.+.+.+. +..+++|+|+|||+++.+..||+|++|++|++++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 9999999999999999999999999999999999999988875 3467899999999999999999999999999999
Q ss_pred ecChhhHhcCCCchhHHHHHHHhhcccccccccc-ccccchhhhhhhcccccccccccccCC--CCCCCCCCcccccccC
Q 000984 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDG-QRKSEISMESLRHSSHRMSLRRSISRG--SSIGNSSRHSISVSFG 677 (1198)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 677 (1198)
.|+++++.++ ++.|.++...+....+.+...+. ........................... ................
T Consensus 842 ~g~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1522)
T TIGR00957 842 MGSYQELLQR-DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRH 920 (1522)
T ss_pred eCCHHHHHhc-chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 9999999875 56777776543221111000000 000000000000000000000000000 0000000000000000
Q ss_pred CCCCCCCcccCCCCCCCCC---CCcccCCcchhHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000984 678 LPSGQFADTALGEPAGPSQ---PTEEVAPEVPTRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPP 753 (1198)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1198)
..+............... .+++..+.+.+..+++|.+ .++...++.+++.++..++....++|++.|.+......
T Consensus 921 -~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~ 999 (1522)
T TIGR00957 921 -HGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNG 999 (1522)
T ss_pred -ccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 000000000000000000 0001112223333333332 23333333333333444445556677777776422110
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHH
Q 000984 754 HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASV 833 (1198)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i 833 (1198)
. .....+|..+|++++++..++.++..+++...+.++++++|++++++++++|++||| ++++|+|+|||++|++.+
T Consensus 1000 ~--~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~i 1075 (1522)
T TIGR00957 1000 T--QNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTV 1075 (1522)
T ss_pred C--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHH
Confidence 0 111234566788888888888888889999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhH
Q 000984 834 RALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIR 913 (1198)
Q Consensus 834 ~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~ 913 (1198)
|..++..+..++..++.+++.++++++.+|++++++++++++++++..++.+..+...+......+...+++.|+++|++
T Consensus 1076 d~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~ 1155 (1522)
T TIGR00957 1076 DSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVS 1155 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcH
Confidence 99999999999999999999999988888877666555544444443333333344344444556677899999999999
Q ss_pred HHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCHHHHHHHHHHHHHH
Q 000984 914 TVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV-EDGKATFSDVFKVFFSLTMT 992 (1198)
Q Consensus 914 tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~g~~t~g~l~~~~~~~~~~ 992 (1198)
|||+|++|+++.+++.+..+...+..+.......+......++.. +++++.+...+ ..|.++.|.+.+++.+...+
T Consensus 1156 tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~ 1232 (1522)
T TIGR00957 1156 VIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQV 1232 (1522)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888766554444333333222222 23333444444 35789999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeC
Q 000984 993 AIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRA 1070 (1198)
Q Consensus 993 ~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~ 1070 (1198)
..++..+......++.++.+++|+.++++.+++.+...+. .+..++.+|+|+|+||+|+|+++ .++||+||||+|+|
T Consensus 1233 ~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~ 1311 (1522)
T TIGR00957 1233 TFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHG 1311 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcC
Confidence 9999999999999999999999999999877654311111 11123467899999999999754 24799999999999
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHH
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEA 1150 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tde 1150 (1198)
|||||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+|||||||++. +++|||
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sde 1389 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDE 1389 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 269999
Q ss_pred HHHHHHHHcchHHHHHhccccccceee
Q 000984 1151 EIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1151 ei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|||+|+++|+++|||.+||+||||+|.
T Consensus 1390 ei~~al~~a~l~~~I~~lp~GLdt~v~ 1416 (1522)
T TIGR00957 1390 EVWWALELAHLKTFVSALPDKLDHECA 1416 (1522)
T ss_pred HHHHHHHHcCcHHHHhhCccCCCceec
Confidence 999999999999999999999999973
No 7
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.9e-119 Score=1197.88 Aligned_cols=995 Identities=17% Similarity=0.199 Sum_probs=720.4
Q ss_pred HHHHHHHHH----HHHHHHHHhCChhhhhc-cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 131 GERQATRIR----GLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 131 ~~~~~~~lr----~~~~~~ll~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
..+.+.++| ..+++++++.+...+.. ..++|+++|++++|++++.+.+......+...+..+++.+++..+++|
T Consensus 309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~- 387 (1560)
T PTZ00243 309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGW- 387 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 345555555 55667777766655531 136899999999999999999866554444434333444455555565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
.+++.++++++++.+..++.+...+.+++..+..+++.+.++|.++|||+||+++||+.+.+++.+.++++.+...+...
T Consensus 388 ~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~ 467 (1560)
T PTZ00243 388 CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777888888888888888999999999999999999999999999999999999999988888766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
...+...+......+. ..+.++.+.+..+.++++.+|+.+..+-....++..++..+..+..+.++..|+.+++..++
T Consensus 468 ~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e 545 (1560)
T PTZ00243 468 ARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDN 545 (1560)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 6554443332222222 22234556667788999999998877777777888888889999999999999999997543
Q ss_pred CCC----c-cC------------C------C-------Cc--c-------------------------cCCCcccEEEEe
Q 000984 366 EID----A-YD------------T------K-------GK--I-------------------------LDDIRGDIELRD 388 (1198)
Q Consensus 366 ~~~----~-~~------------~------~-------~~--~-------------------------~~~~~g~i~~~~ 388 (1198)
... + .+ . + +. + .....+.+.++|
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1560)
T PTZ00243 546 ATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVED 625 (1560)
T ss_pred ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccc
Confidence 100 0 00 0 0 00 0 000113467788
Q ss_pred EEEEcCCC-------------------------------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 000984 389 VYFSYPAR-------------------------------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1198)
Q Consensus 389 v~~~y~~~-------------------------------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~ 431 (1198)
++|.|+.. .++++|+|+||+|++|++++|+||||||||||+++
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~ 705 (1560)
T PTZ00243 626 TDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQS 705 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHH
Confidence 87765420 12458999999999999999999999999999999
Q ss_pred HhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 000984 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1198)
Q Consensus 432 l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 511 (1198)
|+|+++|++|+|.+++ +|+||||+||+|++||+|||.|+.+ .+.+++.++++.|+++++++.+|+|
T Consensus 706 i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g 771 (1560)
T PTZ00243 706 LLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGG 771 (1560)
T ss_pred HhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhcc
Confidence 9999999999998753 7999999999999999999999765 4567788899999999999999999
Q ss_pred ccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHhCCCeEEEEecCcchhhccCEE
Q 000984 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ-EALDRIMVNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 512 ~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~-~~i~~~~~~~t~i~itH~~~~~~~~d~i 590 (1198)
++|.+|++|.+|||||||||+||||+|++|+|||||||||+||+++.+.+. +++....+++|+|+|||+++.+..||+|
T Consensus 772 ~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~i 851 (1560)
T PTZ00243 772 LETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYV 851 (1560)
T ss_pred chHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999877664 5565566789999999999999999999
Q ss_pred EEEeCCEEEEecChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCCc
Q 000984 591 AVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRH 670 (1198)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1198)
++|++|++++.|+++++++. +.|..+........+..+ ..... +. +........ ........ ..
T Consensus 852 i~l~~G~i~~~G~~~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~--~~~~~~~~-~~------ 915 (1560)
T PTZ00243 852 VALGDGRVEFSGSSADFMRT--SLYATLAAELKENKDSKE-GDADA--EV--AEVDAAPGG--AVDHEPPV-AK------ 915 (1560)
T ss_pred EEEECCEEEEecCHHHHHhC--hHHHHHHHhhcccccccc-ccccc--cc--ccccccccc--cccccccc-cc------
Confidence 99999999999999999864 456666543221111000 00000 00 000000000 00000000 00
Q ss_pred ccccccCCCCCCCCcccCCCCCCCCCCCcccCCcchhHhhhhhcCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 671 SISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKP-E-IPVILAGTIAAMANGVILPIYGLLISSVIET 748 (1198)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1198)
+. .....................+++..+.+.++.+..|.+. + +...+..+++.++..++.....+|++.|.+.
T Consensus 916 --~~--~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~ 991 (1560)
T PTZ00243 916 --QE--GNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTR 991 (1560)
T ss_pred --cc--cccccccccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00 0000000000000000000000111222344433333322 1 1111111122222223333344455554432
Q ss_pred hcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHh
Q 000984 749 FFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSA 828 (1198)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~ 828 (1198)
.. ......|+.+|+++.++..++.+++.+.....+.+..+++|++++++++++|++||| ++++|+|+|||++
T Consensus 992 ~~------~~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~ 1063 (1560)
T PTZ00243 992 SF------KLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSR 1063 (1560)
T ss_pred cc------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHh
Confidence 11 111234566677666666666677777777788888999999999999999999999 5899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHH
Q 000984 829 DAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK----MKYEEASQV 904 (1198)
Q Consensus 829 D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 904 (1198)
|++.++..++..+..++..++.+++.++++++.+|.+.+ +++|+.+++. .+.+++.+..++.+ ...+...++
T Consensus 1064 Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~---~~i~~~~~~~-~i~~~~~~~~r~~~r~~~~~~s~l~s~ 1139 (1560)
T PTZ00243 1064 DIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLV---ALVPCGYLYY-RLMQFYNSANREIRRIKSVAKSPVFTL 1139 (1560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 999999999999999999999999999998888885433 3334333332 22233333344443 455667899
Q ss_pred HHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcCHHHH
Q 000984 905 ANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR--LVEDGKATFSDV 982 (1198)
Q Consensus 905 ~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--l~~~g~~t~g~l 982 (1198)
+.|+++|+++||+|++++.+.++|.+..+.+.+..+.......+......++..+..+++.+++.. +...+.+++|.+
T Consensus 1140 ~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l 1219 (1560)
T PTZ00243 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLV 1219 (1560)
T ss_pred HHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 999999999999999999999999999999988877665555444444444444443333334433 333455788988
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCC-CC-------------------------CCCCC--
Q 000984 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID-PS-------------------------DESGT-- 1034 (1198)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~-~~-------------------------~~~~~-- 1034 (1198)
..++.+...+..++..+......++..+.+++|+.++++..++.+ +. +...+
T Consensus 1220 ~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1299 (1560)
T PTZ00243 1220 SLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSA 1299 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCccc
Confidence 888888889999999999999999999999999999996433211 00 00000
Q ss_pred -cccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 000984 1035 -ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1198)
Q Consensus 1035 -~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~ 1113 (1198)
+.++..|.|+|+||+|+|+++ .++||+||||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||++++
T Consensus 1300 ~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1300 APHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC
Confidence 112246899999999999753 346999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+++||++|++|||||+||+||||+||+++ +++||+|||+||++|+++|||.+||+||||.|.
T Consensus 1379 l~~LR~~I~iVpQdp~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vg 1440 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVL 1440 (1560)
T ss_pred HHHHHhcceEECCCCccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCccccccccc
Confidence 99999999999999999999999999875 379999999999999999999999999999874
No 8
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-116 Score=1174.94 Aligned_cols=1009 Identities=17% Similarity=0.202 Sum_probs=703.1
Q ss_pred HHHHHHHHHH----HHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000984 132 ERQATRIRGL----YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1198)
Q Consensus 132 ~~~~~~lr~~----~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~ 207 (1198)
.+.+.++|.. +++++++.+...+++ .++|+++|++++|++++.+.+......|...+..+++.+++...++| .+
T Consensus 147 ~~~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~-~~ 224 (1490)
T TIGR01271 147 HHLGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEV-NG 224 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3455555554 589999999888876 48999999999999999998766554444444344444444555555 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
++.++++++++++..++.+.+.+..++.++..+++.+.++|.++|||+||+|+||+.+.+++.+.++++.+...+.....
T Consensus 225 l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~ 304 (1490)
T TIGR01271 225 FCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR 304 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778888888889999999999999999999999999999999999999999999999999998888776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 000984 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG-EASPCLSAFGAGQAAAFKMFETINRKPE 366 (1198)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 366 (1198)
.+...+..... ..+..+.++.+.+. +..+.+.+|+++..+.....++. .++..+..+..+.++..|+.+++..++.
T Consensus 305 ~~~~~~~~~~~--~~~~~~~f~~y~~~-~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~ 381 (1490)
T TIGR01271 305 YFYSSAFFFSG--FFVVFLSVVPYALI-KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY 381 (1490)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 33322221111 12223334444443 33577777776655544444543 4555678888899999999999976432
Q ss_pred CCccCCCCcccCCCcccEEEEeEEEEcCCCC-------------------------------CCccccceeEEEeCCCEE
Q 000984 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARP-------------------------------NEQIFSGFSISISSGTTA 415 (1198)
Q Consensus 367 ~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~-------------------------------~~~~l~~i~l~i~~g~~~ 415 (1198)
+... . ......|+++|++|.|+... .+++|+|+||+|++||++
T Consensus 382 -~~~~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~ 455 (1490)
T TIGR01271 382 -KTLE---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLL 455 (1490)
T ss_pred -cccc---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEE
Confidence 1111 0 01123599999999995310 136899999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHH
Q 000984 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495 (1198)
Q Consensus 416 ~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~ 495 (1198)
+|+||+|||||||+++|+|+++|.+|+|.++| +|+||+|+||+|++||+|||.||.+ ++++++.++
T Consensus 456 ~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~ 521 (1490)
T TIGR01271 456 AVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSV 521 (1490)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHH
Confidence 99999999999999999999999999999998 6999999999999999999999865 566778888
Q ss_pred HHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHH-HHHHHhCCCeE
Q 000984 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE-ALDRIMVNRTT 574 (1198)
Q Consensus 496 ~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~-~i~~~~~~~t~ 574 (1198)
++.|++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|||||||||+||+++++.+.+ ++.++.+++|+
T Consensus 522 ~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tv 601 (1490)
T TIGR01271 522 IKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTR 601 (1490)
T ss_pred HHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 57777789999
Q ss_pred EEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhhcc----cc------c-------c-cc----
Q 000984 575 VIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK----ES------E-------Q-TI---- 632 (1198)
Q Consensus 575 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~----~~------~-------~-~~---- 632 (1198)
|+|||+++.+..||+|++|++|++++.|+++++.+. ++.|...+...+... +. + + ..
T Consensus 602 ilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1490)
T TIGR01271 602 ILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFS 680 (1490)
T ss_pred EEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999875 445555542110000 00 0 0 00
Q ss_pred -cccccc---chhhhh-h-h-------cc-c------------------ccccccccc-------cCCCCCCC-CCCccc
Q 000984 633 -DGQRKS---EISMES-L-R-------HS-S------------------HRMSLRRSI-------SRGSSIGN-SSRHSI 672 (1198)
Q Consensus 633 -~~~~~~---~~~~~~-~-~-------~~-~------------------~~~~~~~~~-------~~~~~~~~-~~~~~~ 672 (1198)
++.... .+..+. . + .. + ......+.. ...+..+. ......
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1490)
T TIGR01271 681 GPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQ 760 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccc
Confidence 000000 000000 0 0 00 0 000000000 00000000 000000
Q ss_pred ---------cccc---CCCCC----------------------C-----CCcc--cCC-CCC------CC---CC-----
Q 000984 673 ---------SVSF---GLPSG----------------------Q-----FADT--ALG-EPA------GP---SQ----- 696 (1198)
Q Consensus 673 ---------~~~~---~~~~~----------------------~-----~~~~--~~~-~~~------~~---~~----- 696 (1198)
.... ....+ . .... ... ... .+ ..
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1490)
T TIGR01271 761 YHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECF 840 (1490)
T ss_pred cccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 0000 00000 0 0000 000 000 00 00
Q ss_pred C--CcccCCcchhHhhhhhcCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c---CCCch-h---------h
Q 000984 697 P--TEEVAPEVPTRRLAYLNKP-E-IPVILAGTIAAMANGVILPIYGLLISSVIETF--F---KPPHE-L---------K 757 (1198)
Q Consensus 697 ~--~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~---------~ 757 (1198)
. ++...+.+.++.+++|.+. + +..+++.+++.++..++..+..+|+..|.... + ..... . .
T Consensus 841 ~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1490)
T TIGR01271 841 ADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIIT 920 (1490)
T ss_pred hHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCcccccccccc
Confidence 0 0001112333334333322 1 22222222223333334444445554443210 0 00000 0 0
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHH
Q 000984 758 KDSRFW-ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRAL 836 (1198)
Q Consensus 758 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~ 836 (1198)
....+| +.+|++++++..++.+++.+++...+.+++.++|.+++++++++|++||+ .+|+|+++|||++|++.+|+.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~ 998 (1490)
T TIGR01271 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDM 998 (1490)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHH
Confidence 011222 34455555556677788889999999999999999999999999999999 599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHH
Q 000984 837 VGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVA 916 (1198)
Q Consensus 837 l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIr 916 (1198)
++..+..++..++.+++.++++++++|++++++++++.+++++..++.+..+...+......+...+++.|+++|+.|||
T Consensus 999 l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIr 1078 (1490)
T TIGR01271 999 LPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIR 1078 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999876554333322222222222222233333334445667899999999999999
Q ss_pred HhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Q 000984 917 SFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY--AASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994 (1198)
Q Consensus 917 af~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~ 994 (1198)
+|++++++.++|.+..+...+..+.......+......++..+.. +++++++.. .++.|.+..++.+...+..
T Consensus 1079 af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~ 1153 (1490)
T TIGR01271 1079 AFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILS 1153 (1490)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHH
Confidence 999999999999999987665544333322222222222111111 111222222 2233444444555566667
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC----------------CCcccCCcccEEEeeeeEECCCCCCc
Q 000984 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES----------------GTILEDVKGEIELHHVSFKYPSRPDV 1058 (1198)
Q Consensus 995 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~~G~I~f~nVsf~Y~~~~~~ 1058 (1198)
++..+......++..+.+++|+.++++.+++.....+. .++.++..|+|+|+||+|+|+++ .+
T Consensus 1154 ~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~ 1232 (1490)
T TIGR01271 1154 TLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GR 1232 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-Cc
Confidence 77778888889999999999999999876653211100 01123457899999999999753 45
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHH
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1198)
+||+||||+|+||||||||||||||||||+++|+|+|+ .+|+|+|||+||+++++++||++|++|||||+||+||||+|
T Consensus 1233 ~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 79999999999999999999999999999999999998 79999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1139 IAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1139 I~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|++. .+++|+|+|+|++.++++++|.++|+||||.|-
T Consensus 1312 Ldp~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1312 LDPY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred hCcc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 9875 368999999999999999999999999999884
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-100 Score=888.74 Aligned_cols=576 Identities=39% Similarity=0.641 Sum_probs=527.0
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1198)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1198)
..+++++.|+++..+.+ ..+.++.++......+.|.+.|+++|.+....+. .......+..+..+.++.+++.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l-~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWL-VAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred hHHHHHHHHhchhHHHH-HHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999987754433 3444444444455666777899999987651111 2223334556667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
.+++.+.+.++..++|.++|+++++++++|||. +.+|++++|++.|++.+.+.++..+...+..+...++++.+++.++
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 999999999999999999999999999999997 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
|.++++.++.+|++.++..+++++.++..++.++..++.++...|.+++|||||+|+.|+.+.++|.+..++..+...+.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1198)
....+.......+...+..+.++++|++++..+.++.|.+.+++++......++..+...+..++++..|++|+||++++
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 88888888888888888889999999999999999999999988888877778888888999999999999999999999
Q ss_pred CCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
+|..+... ...+...+|.|+|+||+|+||++++.++|+|+||+|+|||.||+|||||+||||++++|.++|+|++|+|
T Consensus 448 ~P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 98876542 1122256899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
.+||+||++++.++||++||+|.|||.||++||+|||.||.++.++|+++.|+++++.|+||..+|+||+|.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
||||||||||||||++||.||||||+|||||+++|..+++++.+..+++|||+|+||++++++||+|+|+++|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhcCCCchhHHHHHHHhhcc
Q 000984 604 HSKLVEDPEGAYSQLIRLQEANK 626 (1198)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~ 626 (1198)
|+||++++++.|+++++.|....
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred HHHHhhCcccHHHHHHHHhcccC
Confidence 99999998899999998775443
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-96 Score=901.45 Aligned_cols=579 Identities=46% Similarity=0.781 Sum_probs=542.2
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1198)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1198)
.+.++++++++..+ .|.+++++++++++.++..|++.+.++.++..+...+ .+........|+++++++|++.+++.+
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~-~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPD-DDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999988766 7888899999999999999999999999998876432 222223333478888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
++++++.+.++++.+|+|..+|++++++++.|||...++|.+.+|+++|...++..+...+..+++.+..++.+++++|+
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997655699999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
++|.+++++++..|++++......+.+.....+..+..++..+...|++.+||||++|+.|+++.+.|.+..++..+...
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~ 885 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF 885 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1198)
+..++.++.+++.+.+.++.+++.+|+|++++..+.+++..++.++..+......+++.....+.+..+..|+.++++.+
T Consensus 886 ~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~ 965 (1228)
T KOG0055|consen 886 KRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEIL 965 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888877778888888889999999999999999999
Q ss_pred ccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+++|++++++..+...+..+|+|+++||+|+||++|+.++|+|+||+|++|+.+||||||||||||++.+|.|+|+|.+|
T Consensus 966 dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen 966 DRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG 1045 (1228)
T ss_pred cCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 99987766543333445678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCC
Q 000984 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1198)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~ 521 (1198)
.|.|||.|++++++++||++||.|+|||.||++||||||+||.+..+.+++.+|++.+++|+||.+||+||||.|||+|.
T Consensus 1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred eEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 99999999999999999999999999999999999999999966689999999999999999999999999999999999
Q ss_pred CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
+||||||||||||||++|||+||||||+|||||.++|+.+|+++++...+||+|+||||++++++||.|.|+++|+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHhcCCCchhHHHHHHHh
Q 000984 602 GTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|+|++|+++ +|.|.+|++.|.
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhcc
Confidence 999999995 899999987653
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.4e-85 Score=798.57 Aligned_cols=550 Identities=32% Similarity=0.515 Sum_probs=497.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1198)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1198)
+++..++..+.+++.|+ +...++|......+ .+.+...+++++..++..+++.+++.+...+.+.|....+-.
T Consensus 159 v~~~sl~l~i~~l~~p~---~~q~viD~Vl~~~~----~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~ 231 (709)
T COG2274 159 VLLASLLLQLLALATPL---FSQIVIDKVLPDAS----RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSG 231 (709)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhccCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444555566666666 44556777654432 234445556667778888899999999999999999999999
Q ss_pred HHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000984 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1198)
Q Consensus 141 ~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~ 220 (1198)
.+++|++++|+.||+++ ++|++++|++ |.+.|++++.......+..+.+++..++++++++|.++++.++.+|++++.
T Consensus 232 ~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~ 309 (709)
T COG2274 232 RFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLI 309 (709)
T ss_pred HHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 9999999996 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1198)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1198)
..++.+..++..++..+..++..+.+.|+++|+++||+.+.|.++..+|++...+..+...+.............++..+
T Consensus 310 ~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 389 (709)
T COG2274 310 TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888877777777788888
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCC
Q 000984 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1198)
Q Consensus 301 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1198)
+.++++|+|+.++.++.+|.|.++++.+..-....++..+......+.....+.+|+.+.++.++|.+.... ....+..
T Consensus 390 ~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~ 468 (709)
T COG2274 390 SSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKL 468 (709)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-ccccccc
Confidence 889999999999999999999998876555555668888888899999999999999999998877443221 2344566
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
+|+|+++||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|+|.|+|+|++|+|.+||.|+++++++.+|+
T Consensus 469 ~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 469 QGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred CceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 8999999999999765 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|+||+||+.||+|||||||+++.|+.++|+++++|+.++++++|+++|.||+|.+||+|.+|||||||||+||||++++
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHH
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1198)
|+||||||||||||+++|+.|.+.+.+..++||+|+||||++++++||||+|||+|+|+++|+|+||++. +|.|.++++
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 899999887
Q ss_pred HH
Q 000984 621 LQ 622 (1198)
Q Consensus 621 ~~ 622 (1198)
.|
T Consensus 707 ~q 708 (709)
T COG2274 707 QQ 708 (709)
T ss_pred cc
Confidence 54
No 12
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.3e-86 Score=829.02 Aligned_cols=574 Identities=22% Similarity=0.325 Sum_probs=488.0
Q ss_pred ccccccccchHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHH
Q 000984 36 KQTEKTESVPFYKLFTFADS-ADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGI 114 (1198)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 114 (1198)
.++++.+.+++..|..|++. .++...++.+++.++..++.....+|+..|.+.-...... . .....+..+|.++++
T Consensus 793 ~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~-~~~~~~~~vY~~l~~ 869 (1381)
T KOG0054|consen 793 EEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--T-VSTSFYLGVYALLGV 869 (1381)
T ss_pred HHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--C-CCcchHHHHHHHHHH
Confidence 34446677888888888876 4444444445556666666666666766665542111100 0 112345567788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 115 GSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG 194 (1198)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~ 194 (1198)
+..++.+++.+.+.+.+.++++++|..++++++|.||+|||+ ||+|+|+||||+|++.+|+.+|..+..+++.++.+++
T Consensus 870 ~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~ 948 (1381)
T KOG0054|consen 870 ASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLG 948 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 000984 195 GFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274 (1198)
Q Consensus 195 ~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 274 (1198)
.++++.+..|+..++++++..+++.+..+|....+...+.....+++..+|++|+++|+.|||+|+.|++|.+++.+..+
T Consensus 949 ~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D 1028 (1381)
T KOG0054|consen 949 ILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELID 1028 (1381)
T ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhh
Confidence 99999999998888887777777788888888888888888888999999999999999999999999999999988877
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 275 TAYKSG---VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQ 351 (1198)
Q Consensus 275 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 351 (1198)
.+.+.. ....+|.++++.+...+..+..++...+. ..+..++|.+.-.+.+.+.....+++.......+...+
T Consensus 1029 ~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~----~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m 1104 (1381)
T KOG0054|consen 1029 ENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL----PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNM 1104 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 766553 34566677777765444333333222221 12225567666666677777788888888899999999
Q ss_pred HHHHHHHHHHccCCCCCccCC---CCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHH
Q 000984 352 AAAFKMFETINRKPEIDAYDT---KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTV 428 (1198)
Q Consensus 352 ~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl 428 (1198)
.+++|+.++.+.++| .+... .+++.||.+|.|+|+|++.+|... .++|||||||+|+|||+|||||+||||||||
T Consensus 1105 ~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL 1182 (1381)
T KOG0054|consen 1105 VSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSL 1182 (1381)
T ss_pred hhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHH
Confidence 999999999987666 22221 135568889999999999999643 5789999999999999999999999999999
Q ss_pred HHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhC
Q 000984 429 ISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508 (1198)
Q Consensus 429 ~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l 508 (1198)
+++|+|+.+|.+|+|.|||+||+++++++||++++++||||.||+||+|.||+ +..+++|+++|+|++.|++.+.++++
T Consensus 1183 ~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~ 1261 (1381)
T KOG0054|consen 1183 ILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSL 1261 (1381)
T ss_pred HHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHHHhChHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999 67789999999999999999999999
Q ss_pred CCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccC
Q 000984 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588 (1198)
Q Consensus 509 ~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d 588 (1198)
|+|+|+.|.|+|.|||.||||.+||||||+|+++||+||||||++|++|+..||+.|++.+++||||+|+||++++.++|
T Consensus 1262 p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~D 1341 (1381)
T KOG0054|consen 1262 PGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSD 1341 (1381)
T ss_pred CcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEEEecChhhHhcCCCchhHHHHH
Q 000984 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 589 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1198)
||+|||+|+|+|+|+|++|++++++.|++++.
T Consensus 1342 rVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1342 RVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred eEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999999998888875554
No 13
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-80 Score=770.50 Aligned_cols=567 Identities=22% Similarity=0.297 Sum_probs=458.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++.+++|.++..+. +++++++.++..++.+..|++++.++|........ ......+...++++.++..++.+++.+
T Consensus 10 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK11174 10 TRWLKQQSKPAKRW-LNLSILLGFLSGLLLIAQAWLLATILQALIIENIP---REALLPPFILLILLFVLRALLAWLRER 85 (588)
T ss_pred hHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566676665443 33455555556666667777888888865321111 111222233344445556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
.....+.+...++|..+++++++.|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 86 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 86 VGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999874 99999999999999999999888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999888888888888888888888899999999999999999999999999999998888877766665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQV------VNV---MVAVLTGSMSLGEASPCLSAFGAGQAAAFK 356 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~------~~~---~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r 356 (1198)
..+....+..++..+..++.+++++.... +.++.|.+ +.. +........++..+...+..+..+..+++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333333333233233333322 55555543 111 112222345666777777888899999999
Q ss_pred HHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 357 MFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.++++.+++..... ....+....+.|+++||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|++
T Consensus 324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999997654321111 11111112356999999987763 357999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh
Q 000984 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516 (1198)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v 516 (1198)
|++|+|.+||+|+++++.+++|++|+||||+|+||+|||||||.+|.|++++++++++|+.++++++++++|+|+||.+
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCC
Q 000984 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1198)
Q Consensus 517 ~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1198)
||+|.+|||||||||+||||++++|+|||||||||+||+++++.+++++++..+++|+|+||||++++..||+|++|++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred EEEEecChhhHhcCCCchhHHHHHHHh
Q 000984 597 KIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
+|+|.|+|+||+++ ++.|+++++.|+
T Consensus 560 ~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 560 QIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred eEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 99999999999987 689999987654
No 14
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.3e-80 Score=816.58 Aligned_cols=570 Identities=29% Similarity=0.463 Sum_probs=477.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
+..++++..++.. .++++++++++.+++.|+++++++.+++.+.... ........+++++++++++.+++.+++.+
T Consensus 813 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 813 LRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA---NLEANSNKYSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554433332 2556667778888999999999999998764321 11122334556667777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 204 (1198)
+..+.+.++..++|..++++++++|++|||. .+++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999984 347999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH
Q 000984 205 LLTLVMLSSIPLLAMSGGVMAIMISKMS-SR-----------------GQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266 (1198)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 266 (1198)
.+++++++++++ +...+.+..+... .+ .++...+....+.|++.|+++||+|+.|+.+.
T Consensus 969 ~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 1045 (1466)
T PTZ00265 969 IVAAVLTGTYFI---FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFC 1045 (1466)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHH
Confidence 887766543333 2333333222111 11 12234566889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1198)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 346 (1198)
++|.+..++..+...+.....++..++..++..+..++++|+|+.++..+.++.|.++.++.+++....++..+...+..
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~ 1125 (1466)
T PTZ00265 1046 NLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777777777777777777888899999999999999999887665544443455666777888
Q ss_pred HHHHHHHHHHHHHHHccCCCCCccCCCCcc---cCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 000984 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKI---LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1198)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1198)
+..+..+++|+++.++.+++.+..+..... +.+..|.|+|+||+|+||++++.++|+|+||+|+||+++||||||||
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCC
Confidence 889999999999999876543221111111 12345789999999999876666899999999999999999999999
Q ss_pred cHHHHHHHHhccCCC------------------------------------------------------CCCeEEECCee
Q 000984 424 GKSTVISLIERFYDP------------------------------------------------------QAGEVLIDGIN 449 (1198)
Q Consensus 424 GKStl~~~l~g~~~~------------------------------------------------------~~G~i~i~g~~ 449 (1198)
|||||+++|+|+|+| ++|+|.+||+|
T Consensus 1206 GKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~d 1285 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285 (1466)
T ss_pred CHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEE
Confidence 999999999999998 69999999999
Q ss_pred cCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 450 ~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+++++.+++|++|+||||+|+||+|||||||.+|.++++++++++||+.++++++|.+||+||||.|||+|.+|||||||
T Consensus 1286 i~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ 1365 (1466)
T PTZ00265 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365 (1466)
T ss_pred HHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeC----CEEE-Eec
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHR----GKIV-EKG 602 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~----G~i~-~~g 602 (1198)
||||||||+++|+||||||||||||+++++.|+++|.+.. +++|+|+||||+++++.||+|+||++ |+++ |+|
T Consensus 1366 RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999884 68999999999999999999999999 9955 899
Q ss_pred ChhhHhcCCCchhHHHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~ 622 (1198)
+|+||++..++.|+++++.+
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhc
Confidence 99999985478999998754
No 15
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7.9e-80 Score=775.66 Aligned_cols=565 Identities=36% Similarity=0.556 Sum_probs=481.1
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
...+++++++.++... .+++.+++.++..++....|++.+.++|......+. .......+.++++.++..++.++
T Consensus 146 ~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l 220 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWP-WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP----PALASAIFFMCLLSIASSVSAGL 220 (711)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777765433 334444455555566666777888888876533221 11112223334445556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+..++.+.+.+...++|..++++++++|+++|++ +++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 221 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~ 299 (711)
T TIGR00958 221 RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999997 499999999999999999999988888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 300 s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888999888888899888888888888999999999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
.....+....+..++..+..++.+++|.+++..+.++.|.+++++.+......++..+......+..+..+.+|++++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 459 (711)
T TIGR00958 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65555554444444555556666778888899999999999888777777777888888889999999999999999998
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.+... ...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|+
T Consensus 460 ~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 460 RKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 765532211 112223456799999999998765578999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++|+||||||++|++||||||.++.++.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||+||||++++|+|||||||||+||+++++.+++ ....+++|+|+||||++++..||+|++|++|+|+|.|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999988 3345789999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHH
Q 000984 603 THSKLVEDPEGAYSQL 618 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~ 618 (1198)
+|+||+++ ++.|+++
T Consensus 696 t~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 696 THKQLMED-QGCYKHL 710 (711)
T ss_pred CHHHHHhC-CCchHhc
Confidence 99999987 5777765
No 16
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6e-79 Score=753.53 Aligned_cols=551 Identities=34% Similarity=0.592 Sum_probs=474.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIR 139 (1198)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 139 (1198)
.+.++.++.++...+....+++++.+++.... .. .....+...++++.++..++.++..+...+.+.+...++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DL----GELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555666677777776541 11 1122233334444556666777777777777799999999
Q ss_pred HHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000984 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219 (1198)
Q Consensus 140 ~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~ 219 (1198)
..+++++++.|+++|+. +++|++++|+++|++.++..+......+...+..+++.+++++..+|.+++++++..|++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999997 48999999999999999999988755555567888889999999999999999888899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299 (1198)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1198)
...++.++.++..+..++..++..+.+.|.++|++++|+|+.++...+++.+..++..+...+.....+....+...+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877788888888889999999999999999999999999998888888877777766666666666566666777
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCC
Q 000984 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379 (1198)
Q Consensus 300 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (1198)
+.+.+.+++|...+..+.++.|.+..++.+......++..+......+..+..+++|+++.++.+++....... ...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~ 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKD 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCC
Confidence 77778888888888888899999888777777767788888888888889999999999999886653322211 223
Q ss_pred CcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh
Q 000984 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 380 ~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
..+.|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4577999999999974 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
++|++|||||+||++||+|||.+|.|++++++++++|+.++++++++++|+|+||.+||+|.+||||||||||||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
+|+|||||||||+||+++|+.+++.+.++.++||+|+||||++++++||+|+|||+|+|+|.|+|+||+++ ++.|++++
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999998 89999999
Q ss_pred HHHh
Q 000984 620 RLQE 623 (1198)
Q Consensus 620 ~~~~ 623 (1198)
+.+.
T Consensus 562 ~~~~ 565 (567)
T COG1132 562 QAQG 565 (567)
T ss_pred HHhh
Confidence 8654
No 17
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.4e-78 Score=759.41 Aligned_cols=563 Identities=27% Similarity=0.360 Sum_probs=473.1
Q ss_pred chHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 44 VPFYKLFTF-ADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 44 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
..++.++++ ..+.++. ++..+++.++..++....|++++.++|......+ .+.....++.++++.++..++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~ 195 (686)
T TIGR03797 121 LGLRDLLRFALRGARRD-LLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD----RSLLVQIALALLAAAVGAAAFQLA 195 (686)
T ss_pred ccHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655 2322222 2222233333333344445577777876643221 122333334444555566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+.+.....+.++..++|..+++++++.|+.+|+.. ++|++++|++ |++.+++.+...+...+..+..+++.+++++++
T Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (686)
T TIGR03797 196 QSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYY 273 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999874 9999999997 899999998877777777777777788889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|++++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+++.|+.+..+|.+...+..+...+
T Consensus 274 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 353 (686)
T TIGR03797 274 SWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS 353 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888888889999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
..........+..++..+..++.+++|++++..+.++.|.++++.........++..+...+..+..+..+.+|+.+.++
T Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 433 (686)
T TIGR03797 354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILE 433 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77666665555555666667777888999999999999999887766666667788888888899999999999999987
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.+... ..+.+..+.|+++||+|+|+.. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus 434 ~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 434 ALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred CCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 655432111 1112235679999999999743 367999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++|+||||||++|+|||||||.++.| .++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred EEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 9999999999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||+||||++++|+|||||||||+||+++++.+.+.+++. ++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999886 68999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~ 621 (1198)
+|+||+++ ++.|+++++.
T Consensus 667 ~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 667 TYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CHHHHHhC-CcHHHHHHHh
Confidence 99999986 7889988764
No 18
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-78 Score=812.35 Aligned_cols=569 Identities=20% Similarity=0.282 Sum_probs=455.7
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1198)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1198)
+.+++..|+.|++..++...++.+++.++..++..+.++|++.|.+.-...... .....+..+|++++++..++.+
T Consensus 948 g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~----~~~~~~~~iy~~l~i~~~~~~~ 1023 (1522)
T TIGR00957 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQ----NNTSLRLSVYGALGILQGFAVF 1023 (1522)
T ss_pred CcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC----CCcchHHHHHHHHHHHHHHHHH
Confidence 445556666666554433333333333333344444555666665532111011 0011233356667777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
+..+++.+.+.+++.++|..++++++++|++||++ +++|+++||+++|++.+++.++..+..++..++.+++.++++++
T Consensus 1024 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~ 1102 (1522)
T TIGR00957 1024 GYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILL 1102 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87888888899999999999999999999999997 59999999999999999999999999999999999999888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
.+|++++++++++++++++..++.+..++..+......++..+++.|+++|+++||+|++|+.+.+++.+..+...+...
T Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1182 (1522)
T TIGR00957 1103 ATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88877766666666666666666666666666667778899999999999999999999999999999888777766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL-EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 360 (1198)
.......+......++.. ++.++.+...+. .+.+++|.+...+.+.+....++..+...+..+..+..+++|+.++
T Consensus 1183 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~ 1259 (1522)
T TIGR00957 1183 PSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEY 1259 (1522)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222221111111111 111222222232 4668888887777777777778888888899999999999999999
Q ss_pred HccCCCCCcc--CCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 361 INRKPEIDAY--DTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 361 ~~~~~~~~~~--~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
++.++|.+.. .......++.+|.|+|+||+|+|+.+ .+++|+|+||+|+|||++|||||||||||||+++|+|+++|
T Consensus 1260 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1260 SETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred hcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 9766553211 11111234567899999999999754 25799999999999999999999999999999999999999
Q ss_pred CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 000984 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1198)
Q Consensus 439 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~ 518 (1198)
++|+|.|||+|+++++++++|++|++|||||.||+||||+||+.. .++++++++++++.+++++++.++|+|+||.+||
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 999999999999999999999999999999999999999999943 3689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||||+||++|+|
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhHhcCCCchhHHHHHH
Q 000984 599 VEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
+|.|+|+||+++ ++.|+++++.
T Consensus 1498 vE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1498 AEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999987 6899998864
No 19
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-79 Score=712.70 Aligned_cols=465 Identities=33% Similarity=0.521 Sum_probs=436.3
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
.+++++.+.+++++++..++++.++......+.|++++.++|....... ......-.+.++.++.++..++.+++.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~-~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD-SADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999998875111 112223345566677888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
..++.++..++|..+|+++++++++||| .|.+|+|++|++.|+..+.+.++..+...+.+.++.++++++|++++|+|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
+++.++.+|++.++..++.+++++.+++.|++.++++....|.+.+++|||+|+.|+++.++|.+..+...+...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1198)
.+.+++...+..++..+.++++|++++..|.+|.|++++|++|...++.++..+..+..++.++..+.+|++|++|.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1026 ~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
.++. +...+...+|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||+++||+|||||++|+|++|
T Consensus 451 i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 451 IPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 7654 22222257899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|+||++++.++||++|++|.|||+||+|||+|||+||.+ ++|||||.+|||+||+||||+++|+||||.|
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~V 598 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVV 598 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 999999999999999999999999999999999999965 8999999999999999999999999999987
No 20
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.9e-78 Score=803.81 Aligned_cols=569 Identities=20% Similarity=0.278 Sum_probs=429.7
Q ss_pred ccccchHHHHHHhhchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 000984 40 KTESVPFYKLFTFADSADTA-LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGI 118 (1198)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (1198)
..+.+++..|.+|++..+.. ++++.+++.++..++....++|++.|.+....... ....+..+|++++++..+
T Consensus 895 ~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~------~~~~~~~i~~~l~~~~~i 968 (1622)
T PLN03130 895 ETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH------GPLFYNLIYALLSFGQVL 968 (1622)
T ss_pred hcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC------chhHHHHHHHHHHHHHHH
Confidence 34455666677776543221 22222222333333333444555555553211111 112234456667777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 119 ASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLI 198 (1198)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~ 198 (1198)
+.+++.+++.+.+.+++.++|.+++++++++|++|||+ +++|+|+||+++|++.+++.++..+..++..+..+++.+++
T Consensus 969 ~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1047 (1622)
T PLN03130 969 VTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVL 1047 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999997 59999999999999999999999999999988888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 000984 199 AFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278 (1198)
Q Consensus 199 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 278 (1198)
++++.|...+++++++.+++.+..++.+..++..+......++..+++.|+++|+++||+|++++++.+.+.+..+...+
T Consensus 1048 i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1127 (1622)
T PLN03130 1048 IGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIR 1127 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 77777744333322222222233344444455555555667888999999999999999999999888777766655544
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 279 SGVQEG---LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEG-YN-----GGQVVNVMVAVLTGSMSLGEASPCLSAFGA 349 (1198)
Q Consensus 279 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 349 (1198)
...... .+.+....+.. .+++++.+...+..+. .. .+.+..++.+.+.....+..+......+..
T Consensus 1128 ~~~~~~~~~~wl~~~l~~~~------~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~ 1201 (1622)
T PLN03130 1128 FTLVNMSSNRWLAIRLETLG------GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAEN 1201 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 12222111111 1111111112222221 11 122222222233333445555556667788
Q ss_pred HHHHHHHHHHHHccCCCCCccC--CCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHH
Q 000984 350 GQAAAFKMFETINRKPEIDAYD--TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKST 427 (1198)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSt 427 (1198)
...+.+|+.++++.++|.+... ..+.+.++.+|.|+|+||+|+|+.+ .+++|+|+||+|+|||++||||||||||||
T Consensus 1202 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKST 1280 (1622)
T PLN03130 1202 SLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSS 1280 (1622)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999987765532211 1112234556889999999999643 357999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh
Q 000984 428 VISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507 (1198)
Q Consensus 428 l~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 507 (1198)
|+++|+|+++|++|+|.|||+|+++++++++|++|++|||||.||+|||||||+++. ++++++++++++.+++++++++
T Consensus 1281 Ll~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1281 MLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999875 5799999999999999999999
Q ss_pred CCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Q 000984 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNA 587 (1198)
Q Consensus 508 l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~ 587 (1198)
+|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.+++||+|+||||++++.+|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHh
Q 000984 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|||+||++|+|+|.|+|+||++++++.|+++++...
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999876789999987543
No 21
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.5e-77 Score=754.83 Aligned_cols=565 Identities=28% Similarity=0.410 Sum_probs=473.1
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1198)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1198)
.++..++.+..+....+ +..+++.++..++....|++++.++|....... .+.+......++++.++..++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~ 216 (708)
T TIGR01193 142 NSLLKFIPLITRQKKLI-VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM----MGTLGIISIGLIIAYIIQQILSYIQ 216 (708)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655433322 222333333334444555677788887653321 1222222333344455566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
.++..+.+.+...++|..+++++++.|+.+|++. ++|++++|++ |++.+.+.+.......+..+..+++.++++++++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (708)
T TIGR01193 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQN 294 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999999999999999999874 9999999998 9999999888777777777777777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
|++++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||++++|+.+.+++.+...+..+...+.
T Consensus 295 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 374 (708)
T TIGR01193 295 MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKY 374 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999988888899999999999999999999999999999999998888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1198)
....+....+..++..+..++++++|+.++..+.++.|.++++.........++..+...+..+..+..+.+|+.+.++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 375 QKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66555555455555556667778889999999999999998877666666678888888889999999999999999876
Q ss_pred CCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
++|.+.... ....++..+.|+++||+|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|
T Consensus 455 ~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 455 DSEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred CCccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 554322111 0112234578999999999973 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
.+||+|+++++.+++|++|+||||||++|+|||||||.++ .++.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9999999999999999999999999999999999999998 577899999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||+||||++++|+|||||||||+||+++++.+.+.+++. +++|+|+||||+++++.||+|++|++|++++.|
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1198)
+|+||+++ ++.|+++++
T Consensus 691 ~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 691 SHDELLDR-NGFYASLIH 707 (708)
T ss_pred CHHHHHhc-CCcHHHHhh
Confidence 99999987 688888763
No 22
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.5e-77 Score=755.93 Aligned_cols=561 Identities=25% Similarity=0.360 Sum_probs=471.6
Q ss_pred HHHHHHhhchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADT--ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1198)
Q Consensus 46 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1198)
++.++.+..+... ...+++.++..+..++. |++.+.++|........ .........++++.++..++.+++
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~---p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 214 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVI---PAFSQIFVDEILVQGRQ----DWLRPLLLGMGLTALLQGVLTWLQ 214 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555443322 22333333333334444 44667777765432211 112223333444455567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
.+.....+.++..++|..+++++++.|+++|++. ++|++++|++.| +.+.+.+...+...+..+..+++.++++++++
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 292 (710)
T TIGR03796 215 LYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYD 292 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999875 999999999988 68999988888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
|++++++++++|+.+++..++.+..++..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+.
T Consensus 293 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 372 (710)
T TIGR03796 293 PVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQEL 372 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888899999999999999999999999999999998888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1198)
.........+..++..+..++.+++|++++..+.++.|.++++.........++..+...+..+..+..+.+|+.++++.
T Consensus 373 ~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~ 452 (710)
T TIGR03796 373 GVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRN 452 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66666655555566666677778889999999999999998877666666678888888889999999999999999877
Q ss_pred CCCCCccCC---C-Cccc-CCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 364 KPEIDAYDT---K-GKIL-DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 364 ~~~~~~~~~---~-~~~~-~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
+++.+.... . .... +...+.|+++||+|+|+.. ++++|+|+||+|++||+++||||||||||||+++|+|+|+|
T Consensus 453 ~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 531 (710)
T TIGR03796 453 PVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP 531 (710)
T ss_pred CCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 554322110 0 0111 2335789999999999853 36799999999999999999999999999999999999999
Q ss_pred CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 000984 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1198)
Q Consensus 439 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~ 518 (1198)
++|+|.+||+|+++++.+++|++|+||||+|++|+|||||||.++.|+.++++++++++.+++++++.++|+|++|.+||
T Consensus 532 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 532 WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred CCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++ .++|+|+||||+++++.||+|++|++|+|
T Consensus 612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i 689 (710)
T TIGR03796 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKV 689 (710)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999986 58999999999999999999999999999
Q ss_pred EEecChhhHhcCCCchhHHHH
Q 000984 599 VEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
++.|+|+||+++ ++.|++++
T Consensus 690 ~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 690 VQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EEecCHHHHHHc-CCcHHHHh
Confidence 999999999986 67888765
No 23
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-76 Score=675.67 Aligned_cols=548 Identities=26% Similarity=0.409 Sum_probs=458.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 68 AIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTIL 147 (1198)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 147 (1198)
..+.+++.....+++...++.+..... ...+..+...++++.++..+..+.+.......+.++...+|..+++++.
T Consensus 9 ~~l~~i~~i~qa~llA~~l~~l~~~~~----~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 9 AVLSGIAIIAQAALLADILTKLIEGQL----FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555443211 1222333344445555667777777777777788888999999999999
Q ss_pred hCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 148 RQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIM 227 (1198)
Q Consensus 148 ~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 227 (1198)
+.++.+-.. .++|+..+.+..-++.++..+...++..+.+.+..+..++.+++++|..++++++++|++.++...+++.
T Consensus 85 ~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~ 163 (559)
T COG4988 85 KLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLA 163 (559)
T ss_pred hCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 228 ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVW 307 (1198)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (1198)
.++..++....+....+++-+.++|+.|+|.|+..+...+++.+..++.++..++.-...-+...+.-++++...+++..
T Consensus 164 a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv 243 (559)
T COG4988 164 AKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAV 243 (559)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888877666655555555555555554433
Q ss_pred -HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEE
Q 000984 308 -YGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIEL 386 (1198)
Q Consensus 308 -~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 386 (1198)
.|-.++..|.++....+.++...=-.+.++..+...++.-..+..++++++.+++.+++..+........+.....+..
T Consensus 244 ~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~ 323 (559)
T COG4988 244 YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISL 323 (559)
T ss_pred HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeee
Confidence 4444433256665544444333333456888888888888888888888888887655432222111111222334556
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~ 466 (1198)
+|++|.||+. +++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.+||+++.+++.+.+|++++||+
T Consensus 324 ~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~ 401 (559)
T COG4988 324 ENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401 (559)
T ss_pred cceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence 6999999854 37999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEE
Q 000984 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1198)
Q Consensus 467 Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illl 546 (1198)
|+|+||.|||||||.+++++.++++++++++.+++.+++.. |+|+||.+||+|.+|||||+||++||||+++++++|||
T Consensus 402 Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ll 480 (559)
T COG4988 402 QNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLL 480 (559)
T ss_pred CCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhh
Q 000984 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1198)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1198)
|||||+||.++|+.|.+.|.++.+++|+|+||||++.+.++|+|+|||+|+++|.|+|++|.++ ++.|++++..|+.
T Consensus 481 DEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 481 DEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred cCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999987 7899999987653
No 24
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4e-76 Score=726.32 Aligned_cols=566 Identities=22% Similarity=0.320 Sum_probs=462.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSE-TVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1198)
++++++|.++..+. +++++++.++..++....+++++.+++.......... ..... .....+++++++..++.++..
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRHWFM-LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYM-LPAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 33455665544332 2233334444444444455567777775421111000 00111 112223345566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000984 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1198)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 204 (1198)
++....+.+...++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999874 9999999999999999999998888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 000984 205 LLTLVMLSSIPLLAM-SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1198)
Q Consensus 205 ~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1198)
.+++++++.+|++++ ...++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999888777776554 3456667777777788888899999999999999999999999999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT-GSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~-~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
....+....+..++..+..++.+++|..+ ..+.++.|.+++++.+... ...++..+...+..+..+..+.+|+.+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666666666666666667778777 4677888887665433322 233455555667788888999999999998
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.+.... ....+..+.|+++||+|+|++. ++++|+|+||+++|||+++||||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 7654321111 1112234679999999999753 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++|+||||||++|++||+|||.++.++.++++++++++.+++++++++ |+|+||.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999 99999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
|||||||||+||||++++|+|||||||||+||+++++.+++.+.+..+++|+|+||||+++++.||+|++|++|+++|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1198)
+|+||+++ ++.|+++++
T Consensus 556 ~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CHHHHHhc-CcHHHHHHh
Confidence 99999987 789998875
No 25
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.8e-76 Score=745.93 Aligned_cols=532 Identities=26% Similarity=0.399 Sum_probs=459.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000984 70 GNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQ 149 (1198)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 149 (1198)
+..++....|++++.++|......+. .......+.++.+.++..++.+++.++..+.+.++..++|..+++++++.
T Consensus 158 ~~~l~~l~~p~~~~~iiD~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 233 (694)
T TIGR03375 158 LINLLALASPLFVMNVYDRVVPNQAF----ETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGL 233 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33334444555777778865432211 12222233333445556677888888888899999999999999999999
Q ss_pred ChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 150 DVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMIS 229 (1198)
Q Consensus 150 ~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 229 (1198)
|+.+ ++ .++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|.++++.++.+|+++++..++.+..+
T Consensus 234 ~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 310 (694)
T TIGR03375 234 RMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLS 310 (694)
T ss_pred Cccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 55 4899999999 7999999998877777777777777777888899999999999999999888888999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 230 KMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYG 309 (1198)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 309 (1198)
+..++..+..++..+.+.|.++|+++||.|++|+.+.++|.+...+..+...+.....+....+..++..+..++.+++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 390 (694)
T TIGR03375 311 RLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999998888888777777776666666666666677778889
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeE
Q 000984 310 GKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDV 389 (1198)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v 389 (1198)
+.++..+.++.|.+++++.+......++..+...+..+..+..+.+|+.++++.+++.+... .........+.|+++||
T Consensus 391 ~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~~~~~~~~~I~~~~v 469 (694)
T TIGR03375 391 VYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT-RFLHRPRLQGEIEFRNV 469 (694)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCccceEEEEEE
Confidence 99999999999999887766666667888888888899999999999999998765432211 11111233567999999
Q ss_pred EEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC
Q 000984 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1198)
Q Consensus 390 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1198)
+|+|++. ++++|+|+||+|+|||+++|||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|
T Consensus 470 sf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~ 548 (694)
T TIGR03375 470 SFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548 (694)
T ss_pred EEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCCh
Confidence 9999743 357999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCC
Q 000984 470 VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1198)
Q Consensus 470 ~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1198)
++|+|||+|||.++.+++++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++++|+|||||||
T Consensus 549 ~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~ 628 (694)
T TIGR03375 549 RLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEP 628 (694)
T ss_pred hhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+||++.
T Consensus 629 Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 629 TSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999889999999999999999999999999999999999999864
No 26
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.6e-76 Score=729.60 Aligned_cols=547 Identities=32% Similarity=0.530 Sum_probs=464.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 66 IGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKT 145 (1198)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 145 (1198)
++.++..++....++++..+++........ .......+.+++++++..++.+++.++..+.+.+....+|..++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 107 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADR----SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGH 107 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555666666654422111 1111222223345556667777777777788889999999999999
Q ss_pred HHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000984 146 ILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMA 225 (1198)
Q Consensus 146 ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 225 (1198)
+++.|..+|++. +.|++++|+++|++.+.+.+...+..++..+..+++.++++++++|++++++++.+|+.+++.....
T Consensus 108 l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~ 186 (582)
T PRK11176 108 MMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVS 186 (582)
T ss_pred HHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 9999999999999999999888888888888999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 226 IMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALS 305 (1198)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (1198)
+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..........+..++..+..++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 266 (582)
T PRK11176 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFV 266 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999998888887777766666555555555555566666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEE
Q 000984 306 VWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIE 385 (1198)
Q Consensus 306 ~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 385 (1198)
+++|+..+..+.++.|.++.++.++.....++..+......+..+..+.+|+.+.++.+++.+... ...++..+.|+
T Consensus 267 ~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~---~~~~~~~~~i~ 343 (582)
T PRK11176 267 LYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK---RVIERAKGDIE 343 (582)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC---cCCCCCCCeEE
Confidence 778888888899999998777666666677888888888888899999999999887644322111 11122345799
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
++||+|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||
T Consensus 344 ~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 344 FRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred EEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 99999999753 36799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEE
Q 000984 466 SQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 466 ~Q~~~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~il 544 (1198)
||||++|++||||||.++.++ +++++++++++.++++++++++|+|+||.+|++|.+|||||||||+||||++++|+||
T Consensus 423 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~il 502 (582)
T PRK11176 423 SQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_pred ccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999998754 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 545 LLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
|||||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|+++|.|+|++|+++ ++.|++++..+
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 999999999999999999999998889999999999999999999999999999999999999987 68899988644
No 27
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.8e-76 Score=785.82 Aligned_cols=512 Identities=20% Similarity=0.279 Sum_probs=412.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000984 108 KFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQ 187 (1198)
Q Consensus 108 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~ 187 (1198)
+|++++++..++.+++.+.....+.+.+.++|..++++++++|+.|||+ +++|+++||+++|++.+++.++..+..++.
T Consensus 1003 ~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~ 1081 (1560)
T PTZ00243 1003 VYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQ 1081 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555667788999999999999999999997 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHH
Q 000984 188 LMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMS 267 (1198)
Q Consensus 188 ~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 267 (1198)
.+..+++.++++++..|.+++++++++.+++.+..++.+..++..+......++..+++.|++.|+++||+|++++.+.+
T Consensus 1082 ~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~ 1161 (1560)
T PTZ00243 1082 CLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQ 1161 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHH
Confidence 99998988888888888554444333333334445555555666666667788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 268 NYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGG--KLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLS 345 (1198)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 345 (1198)
++.+..+...+..........+......++..+..++..+++. .+...+..+.|.+..++.+......++..+...+.
T Consensus 1162 ~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~ 1241 (1560)
T PTZ00243 1162 EALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVA 1241 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877776655443322222221222222221112222222 12223345666665555555555667777777888
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCccC-------------------------C-CCc---ccCCCcccEEEEeEEEEcCCC
Q 000984 346 AFGAGQAAAFKMFETINRKPEIDAYD-------------------------T-KGK---ILDDIRGDIELRDVYFSYPAR 396 (1198)
Q Consensus 346 ~~~~~~~~~~r~~~~~~~~~~~~~~~-------------------------~-~~~---~~~~~~g~i~~~~v~~~y~~~ 396 (1198)
.+..++.+.+|+.++++..++++... . .+. +.++..|.|+|+||+|+|++.
T Consensus 1242 ~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~ 1321 (1560)
T PTZ00243 1242 TVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG 1321 (1560)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC
Confidence 89999999999999986433221000 0 000 112245789999999999753
Q ss_pred CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccH
Q 000984 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476 (1198)
Q Consensus 397 ~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 476 (1198)
.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.|||+|+++++++++|++|+||||||.||+|||
T Consensus 1322 -~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTI 1400 (1560)
T PTZ00243 1322 -LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTV 1400 (1560)
T ss_pred -CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccH
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC-CCEEEEeCCCCCCCH
Q 000984 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD-PRILLLDEATSALDA 555 (1198)
Q Consensus 477 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~-~~illlDe~ts~lD~ 555 (1198)
|+||+++ .++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+||+
T Consensus 1401 reNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~ 1479 (1560)
T PTZ00243 1401 RQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP 1479 (1560)
T ss_pred HHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCH
Confidence 9999964 46899999999999999999999999999999999999999999999999999996 899999999999999
Q ss_pred HhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
++++.|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1480 ~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1480 ALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999987688999998754
No 28
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.1e-76 Score=790.44 Aligned_cols=512 Identities=20% Similarity=0.299 Sum_probs=405.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHH
Q 000984 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGK 184 (1198)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~ 184 (1198)
+...|++++++..++.+++.+++.+.+.+++.++|.+++++++++|++||++ +++|+++||+++|++.+++.++..+..
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHH
Confidence 4455667777778888888888888999999999999999999999999997 599999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHH
Q 000984 185 FLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264 (1198)
Q Consensus 185 ~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 264 (1198)
++..++.+++.+++++.+.+...++++++..++++...++.+..++..+......++..+++.|+++|+++||+|++++.
T Consensus 1031 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~ 1110 (1495)
T PLN03232 1031 FMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR 1110 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHH
Confidence 88888888887777776665433332222222222233333444445555566778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC----C-HHHHHHHHHHHHHHHHHHH
Q 000984 265 AMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE-EGY----N-GGQVVNVMVAVLTGSMSLG 338 (1198)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~----~-~~~~~~~~~~~l~~~~~l~ 338 (1198)
+.+++.+..+...+..........+ ..... .....++.++.+...+.. +.. . ++.+..++.+......++.
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~w-l~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 1187 (1495)
T PLN03232 1111 MAKINGKSMDNNIRFTLANTSSNRW-LTIRL--ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLS 1187 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 8887777666555443322211111 11100 001111111112222221 211 1 1111112222333344566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCC--CcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEE
Q 000984 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTK--GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAA 416 (1198)
Q Consensus 339 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ 416 (1198)
.+...+..+..+..+.+|+.++++.++|.+..... +.+.++..|.|+|+||+|+|+.+ .+++|+|+||+|+|||++|
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekva 1266 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVG 1266 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEE
Confidence 66777888889999999999999876553321111 11224556889999999999533 3579999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHH
Q 000984 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496 (1198)
Q Consensus 417 ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~ 496 (1198)
||||||||||||+++|+|+++|++|+|.|||+|+++++++++|++|+||||||.||+|||||||+++. +++++++++++
T Consensus 1267 IVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al 1345 (1495)
T PLN03232 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEAL 1345 (1495)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 68999999999
Q ss_pred HHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEE
Q 000984 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576 (1198)
Q Consensus 497 ~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ 576 (1198)
+.++++++++++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.++++|+|+
T Consensus 1346 ~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232 1346 ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 577 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1426 IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1426 IAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999999999999988667999998754
No 29
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.3e-75 Score=723.51 Aligned_cols=564 Identities=25% Similarity=0.359 Sum_probs=457.8
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 48 KLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCW 127 (1198)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (1198)
+++.|..++.+. +++.+++.++...+....|.+++.++|......+.. . .....+++.++++.++..++.+++.+..
T Consensus 13 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 13 RLLAYGSPWRKP-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-L-GLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433332 233444445555556666778888888654321110 1 1111122223344445566777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000984 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1198)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~ 207 (1198)
...+.+...++|..+++++++.|.++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|+++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA 168 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999874 9999999999999999999998888888888888888888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
+++++.+|++++...+..+..++..++.++..++..+.+.|.+.|+++||.|+.|+.+.+++.+...+..+...+.....
T Consensus 169 li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (592)
T PRK10790 169 LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLD 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777677777777777777788888999999999999999999999999999888777666655544443
Q ss_pred HHHH-HHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 288 GIGL-GMVMLIVF-CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 288 ~~~~-~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
+... .+..++.. ...+++++.| . +..+.++.|.+++++.+......++..+......+..+..+++|+.+.++.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 249 GFLLRPLLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3321 11112111 1222223333 3 46788999988877666666667888888888999999999999999987544
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+... . ...+...+.|+++|++|+|+. ++++|+|+||++++||+++|||+||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~-~---~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYG-N---DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCC-C---CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 3111 1 111223467999999999974 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
||+|+++++.+++|++|+||||||++|+|||||||.++. ++++++++++++.++++++++.+|+|+||.+|++|.+|||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 999999999999999999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHHhhc
Q 000984 606 KLVEDPEGAYSQLIRLQEAN 625 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~ 625 (1198)
||+++ ++.|+++++.+...
T Consensus 560 ~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 560 QLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHhC-CCHHHHHHHHHhhh
Confidence 99987 68999998766443
No 30
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-74 Score=718.48 Aligned_cols=562 Identities=33% Similarity=0.527 Sum_probs=484.5
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1198)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1198)
++.+.+... ..+++++++.++..++.+..+++++.+++....... ..........++++.++..++.+++.+...
T Consensus 5 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (571)
T TIGR02203 5 LWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD----RSVLWWVPLVVIGLAVLRGICSFVSTYLLS 79 (571)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332 344555566666677777777788777775433211 112222233344556667778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000984 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1198)
Q Consensus 129 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l 208 (1198)
..+.+...++|..+++++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.++++++++|++++
T Consensus 80 ~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 89999999999999999999999999874 89999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG 288 (1198)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1198)
++++.+|+.+++..++.+..++...+..+..++..+.+.|.++|+++||.++.++.+.+++.+..++..+...+.....+
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899888888888889999999999999999999999999999999999988888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 000984 289 IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID 368 (1198)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 368 (1198)
....+..++..+..++.+++|+.++..+.++.|.++++..++.....++..+......+..+..+.+|+.+.++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 66656666666667777888888888999999999888777777777888888888999999999999999987655432
Q ss_pred ccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe
Q 000984 369 AYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1198)
Q Consensus 369 ~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1198)
... ....+..+.|+++||+|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 319 ~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 111 1111234679999999999754 357999999999999999999999999999999999999999999999999
Q ss_pred ecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 449 ~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
|+++++.+++|++++||||+|++|+|||||||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+|||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhH
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+++
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHH
Q 000984 608 VEDPEGAYSQLIRL 621 (1198)
Q Consensus 608 ~~~~~~~~~~~~~~ 621 (1198)
+++ ++.|++++..
T Consensus 555 ~~~-~~~~~~~~~~ 567 (571)
T TIGR02203 555 LAR-NGLYAQLHNM 567 (571)
T ss_pred HHc-CCHHHHHHHH
Confidence 986 6788877653
No 31
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-74 Score=728.94 Aligned_cols=538 Identities=29% Similarity=0.439 Sum_probs=464.9
Q ss_pred HHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Q 000984 75 LPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFF 154 (1198)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f 154 (1198)
....|++++.++|......+. .......+.++++.++..++.+++.++....+.+...++|..+++++++.|+.+|
T Consensus 155 ~l~~p~~~~~iid~v~~~~~~----~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f 230 (694)
T TIGR01846 155 ALVTPLLFQVVIDKVLVHRGL----STLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYF 230 (694)
T ss_pred HHHHHHHHHHHHHHhhccCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHc
Confidence 344455777778865432211 2222333344455556677888888888889999999999999999999999999
Q ss_pred hccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 155 DNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR 234 (1198)
Q Consensus 155 ~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1198)
++. ++|++++|+ +|++.+++.+...+...+..+..++..++++++++|.+++++++++|+++++..++.+..++..++
T Consensus 231 ~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~ 308 (694)
T TIGR01846 231 ESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVED 308 (694)
T ss_pred CCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 874 999999999 699999999877776666666666666788899999999998888898888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 235 GQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL 314 (1198)
Q Consensus 235 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 314 (1198)
..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+.....+.......++..+..++.+++|+.++.
T Consensus 309 ~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~ 388 (694)
T TIGR01846 309 KFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVI 388 (694)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888899999999999999999999999999999999888887777777766666556566666667777889999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcC
Q 000984 315 EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYP 394 (1198)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~ 394 (1198)
.+.++.|.++++.........++..+......+..+..+.+|+.+.++.+++.+.. .....+...+.|+++||+|+|+
T Consensus 389 ~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~ 466 (694)
T TIGR01846 389 GGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAALPELRGAITFENIRFRYA 466 (694)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCCeEEEEEEEEEcC
Confidence 99999999988776666666788888888889999999999999998765543221 1111223356899999999997
Q ss_pred CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc
Q 000984 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1198)
Q Consensus 395 ~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1198)
.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|++|++
T Consensus 467 ~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ 545 (694)
T TIGR01846 467 PD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR 545 (694)
T ss_pred CC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh
Confidence 43 35799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1198)
||||||.++.++.++++++++|+.++++++++++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||
T Consensus 546 ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD 625 (694)
T TIGR01846 546 SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625 (694)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 555 ~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|+|++|+++ ++.|+++++.+
T Consensus 626 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 626 YESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 99999999999998889999999999999999999999999999999999999987 68999988643
No 32
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-75 Score=649.62 Aligned_cols=546 Identities=27% Similarity=0.405 Sum_probs=440.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 69 IGNGLCLPLMTLLFGDLINTFGD-NQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTIL 147 (1198)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 147 (1198)
+++....-..|.++...++.... ...+ ............|.+..++..++..++...+.+..++.-...-++++.+.+
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~ 118 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLM 118 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666665421 1111 112222334455667777888999999999999999999999999999999
Q ss_pred hCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 148 RQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG-GFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAI 226 (1198)
Q Consensus 148 ~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~-~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 226 (1198)
..+.++|.+. .+|.+.+.+..-...|.+.+.-.+..++..++-+.. ...+..-++...+++++..+..+..+......
T Consensus 119 ~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 119 SLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred hhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 9999999875 899999999988888888877666665555443322 23444445565666666666566666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 227 MISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSV 306 (1198)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1198)
+..+.+.+..++.+.+.+.+-+.|.|-.+||.||.|+.+.++|.....+..+...+.....++....-..+..+..+.++
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im 277 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIM 277 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888999999999999999999999999999999999999988888777666555544333344444455555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEE
Q 000984 307 WYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIEL 386 (1198)
Q Consensus 307 ~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 386 (1198)
+.+..-+.++.++.+.++.+.....++..++..+......+.++..-+...+........+. ..+.+....++.|+|
T Consensus 278 ~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~---~~~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 278 VLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ---EAALPIELFGGSIEF 354 (591)
T ss_pred HHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh---hccCCcccCCCcEEE
Confidence 56665567788999888766656666666776666666666666665555544332211111 111222334577999
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~ 466 (1198)
+||+|+|+. ++++|+++||+|++||+|||||+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+.|||||
T Consensus 355 ~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 999999973 4679999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEE
Q 000984 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1198)
Q Consensus 467 Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illl 546 (1198)
||..||++||.+||.+|++..+++++.++|+.+++||-+.++|+||+|.|||+|..||||||||++||||+++||+|+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHh
Q 000984 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++++|++.|.|+|+||++ +.+.|+.++..|.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999999999999999889999999999999999999999999999999999999999 5889999987543
No 33
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-77 Score=650.43 Aligned_cols=506 Identities=29% Similarity=0.418 Sum_probs=423.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 116 SGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGG 195 (1198)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~ 195 (1198)
.+++.-+++++|..+.+-..+++-..+++|+...++.|.-++ .+|+++.-|.+-.+.+. .+...+..+...+.-+..+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 345666777888888888899999999999999999998765 89999988877666665 4444444444444433333
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 000984 196 FLI-AFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274 (1198)
Q Consensus 196 ~i~-~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 274 (1198)
++. ...++||..+++++++.++..+...+.....+.+++....+.+....-.+++-+..|+|-|+.|+.+.++|++...
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 322 2346678888777666665555545555556666677777777888889999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354 (1198)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 354 (1198)
+..+...+......+...+-..+.....+....+..+.+..+..+.|..+.+..+.++...++..+......++.+..-.
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 88777666544433333233333333333333334455667788888877766777888889999888899999999999
Q ss_pred HHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 355 FKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 355 ~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++.+.+++|..+.+ ...+....+|.|+|+||+|.|. +++|+|+||||++.||+.+|+|||||+||||++++|+|
T Consensus 510 Enmfdllkee~eVvd~P-~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVDLP-GAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHhhcCchhhcCC-CCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 99999999888765433 2233445679999999999995 46799999999999999999999999999999999999
Q ss_pred cCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 000984 435 FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1198)
Q Consensus 435 ~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 514 (1198)
+++.++|.|.|||+||+++..+.+|++||+||||..|||+||.+||.+++|.+++|++.+|++.+++||.|.++|+|++|
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEe
Q 000984 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1198)
Q Consensus 515 ~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1198)
.|||+|-.||||||||+|+||+++++|.|++|||+|||||..||+.||.++.++.++||.|+|+||++++.+||.|+|++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChhhHhcCCCchhHHHHHHHhhcc
Q 000984 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK 626 (1198)
Q Consensus 595 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 626 (1198)
+|+|+|.|+|+||+.+.+|.|++|++.|....
T Consensus 747 ~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g 778 (790)
T KOG0056|consen 747 NGRIVERGRHEELLKRDGGAYADMWQAQQAMG 778 (790)
T ss_pred CCeEeecCcHHHHHhccCCcHHHHHHHHHhcC
Confidence 99999999999999988999999998776544
No 34
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.4e-73 Score=706.59 Aligned_cols=565 Identities=29% Similarity=0.414 Sum_probs=458.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
+++++++.++... .+.+.+++.++..++....+++++.++|...... ......+.+++++++..+..++...
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
T PRK13657 7 YARVLQYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAISGKG-------DIFPLLAAWAGFGLFNIIAGVLVAR 78 (588)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555543322 2223333344444455555667778888654321 0111112222223333333443444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
...+...+...+++..+++++++.|..+|++. ++|++++|+++|++.+.+.+...+..++..+..+++.+++++.++|+
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 79 HADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566677799999999999999874 99999999999999998887777777777777777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++++|+.+++..++.+..++..++..+..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888888888888888888889999999999999999999999999999999888887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++.+++|.+++..+.++.|.+++++.++.....++..+...+..+..+..+.+|+.+.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 55555555555555566677778888899999999999887766666667777777788888888889999988887644
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.+... ......+..+.|+++||+|+||++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 318 DVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred ccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 321111 111112234579999999999742 46999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
||+|+++++.+++|++|+||||+|++|+|||||||.++.|+.++++++.+++.+++++++.++|+|+||.+|++|.+|||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHHh
Q 000984 606 KLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~ 623 (1198)
++++. ++.|.+++..+.
T Consensus 555 ~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 555 ELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHC-CChHHHHHHHhh
Confidence 99977 688999887543
No 35
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.6e-73 Score=708.94 Aligned_cols=552 Identities=35% Similarity=0.564 Sum_probs=462.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143 (1198)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 143 (1198)
.+++.++..++....+++++.+++......+. ........+++++.++..++.+.+.+.....+.+....+|..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 98 (576)
T TIGR02204 23 ALVALLITAAATLSLPYAVRLMIDHGFSKDSS----GLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVF 98 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666777888764322111 11222222233334445566677777778888999999999999
Q ss_pred HHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000984 144 KTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223 (1198)
Q Consensus 144 ~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~ 223 (1198)
+++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.+++++.++|++++++++.+|+.+++..+
T Consensus 99 ~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~ 177 (576)
T TIGR02204 99 AHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILL 177 (576)
T ss_pred HHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999874 89999999999999999998888888888888888888899999999988888888888777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA 303 (1198)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1198)
+.+..++..++..+..++..+.+.|.++|+++||.+++|+.+..++.+..++......+..........+..++..+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (576)
T TIGR02204 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIV 257 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999888777666555554444433333344445556
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCccc
Q 000984 304 LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGD 383 (1198)
Q Consensus 304 ~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~ 383 (1198)
+.+++|++++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+..........+..+.
T Consensus 258 ~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 337 (576)
T TIGR02204 258 GVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGE 337 (576)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCce
Confidence 66778888888999999988877766666677888888889999999999999999987654422111111111223457
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++||+|+||.+.++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++++
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 417 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA 417 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhce
Confidence 99999999998643467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|+||+|++|+|||||||.++.|+.++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++||||++++|++
T Consensus 418 ~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~i 497 (576)
T TIGR02204 418 LVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI 497 (576)
T ss_pred EEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHH
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
||||||||+||+++++.+.+.+++..+++|+|+||||++.+..+|+|++|++|++++.|+|+++.++ ++.|++++..
T Consensus 498 lilDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 498 LLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARL 574 (576)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHhh
Confidence 9999999999999999999999998889999999999999999999999999999999999999886 6788887754
No 36
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.9e-74 Score=705.99 Aligned_cols=524 Identities=23% Similarity=0.326 Sum_probs=426.8
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1198)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1198)
+++|.++.++. +++.+++.++..++....+++++.++|....... .. ........++++.++..++.++..++..
T Consensus 4 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02868 4 ILPLLQPRTRR-LVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VL-YLSVAAVAVRAFGIGRAVFRYLERLVGH 78 (529)
T ss_pred HHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443332 2233333344444444555677777776432111 00 0011111122344556667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000984 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1198)
Q Consensus 129 ~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l 208 (1198)
..+.++..++|.++++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++
T Consensus 79 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 79 DAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999874 99999999999999999999888888888888888888999999999988
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 209 VMLSSIPLLAMSGGVMA-IMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1198)
Q Consensus 209 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1198)
++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777665554444 33455556667778899999999999999999999999999999998888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000984 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1198)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1198)
+....+..++..+..++.+++|+.++..+.++.|.+++++.+......++..+......+..+..+.+|+.+.++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 66666666666666677778888888899999998887776666666677777777888889999999999998765542
Q ss_pred CccCCC-CcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 368 DAYDTK-GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 368 ~~~~~~-~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
+..... .....+..+.|+++||+|+|+++ +++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 211110 11112234579999999999753 469999999999999999999999999999999999999999999999
Q ss_pred CeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
|+|++++ .+++|++|+||||+|++|+|||||||.+|.|++++++++++++.++++++++++|+|+||.+||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCc
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~ 581 (1198)
||||||||||++++|+|||||||||+||+++++.|++.+.+..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988899999999995
No 37
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-73 Score=702.39 Aligned_cols=539 Identities=25% Similarity=0.376 Sum_probs=452.4
Q ss_pred HHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc
Q 000984 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDN 156 (1198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~ 156 (1198)
+.|++++.++|........ ......+...++++.++..++.++..+.....+.+...++|..+++++++.|+++|++
T Consensus 13 ~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~ 89 (569)
T PRK10789 13 IPPKVVGIIVDGVTEQHMT---TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR 89 (569)
T ss_pred HHHHHHHHHHHHhccCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC
Confidence 3344677777765322111 1112222233333444555666777777777889999999999999999999999987
Q ss_pred cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 157 ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA-FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG 235 (1198)
Q Consensus 157 ~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1198)
. ++|++++|+++|++.+.......+..++..+..+++.++++ ++++|.+++++++.+|+++++...+.+..++..++.
T Consensus 90 ~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 168 (569)
T PRK10789 90 H-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLA 168 (569)
T ss_pred C-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 99999999999999999877776777777655555555444 579999999888888988888888888888777778
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 236 QGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE 315 (1198)
Q Consensus 236 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 315 (1198)
++..++..+.+.|.++|+++||+|++|+.+.+++.+...+..+...+.....+....+...+..+..++.+++|.+++..
T Consensus 169 ~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~ 248 (569)
T PRK10789 169 QAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVN 248 (569)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888899999999999999999999999999999888877777666666555544444444555556667788888889
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCC
Q 000984 316 EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395 (1198)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~ 395 (1198)
+.++.|.+++++.+......++..+...+..+..+..+.+|+.+.++.+++.+... ...++..+.|+++|++|+|+.
T Consensus 249 g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~~ 325 (569)
T PRK10789 249 GSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQ 325 (569)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECCC
Confidence 99999999887776666667777778888889999999999999987654422111 111223467999999999975
Q ss_pred CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCccc
Q 000984 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1198)
Q Consensus 396 ~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 475 (1198)
. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++++||||+|++|++|
T Consensus 326 ~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t 404 (569)
T PRK10789 326 T-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404 (569)
T ss_pred C-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecccc
Confidence 3 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 476 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
+||||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+||+
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhh
Q 000984 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1198)
++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ ++.|++++..++.
T Consensus 485 ~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 9999999999998889999999999999999999999999999999999999987 6889999876643
No 38
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7.2e-74 Score=764.40 Aligned_cols=498 Identities=19% Similarity=0.295 Sum_probs=407.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 115 GSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG 194 (1198)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~ 194 (1198)
+..++.+++.+++.+.+.+++.++|..++++++++|++||++ +++|+++||+++|++.+++.++..+..++..+..+++
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777888889999999999999999999999997 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 000984 195 GFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274 (1198)
Q Consensus 195 ~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 274 (1198)
.++++++++|++++++++++.+++++..++.+..++..+......++..+++.|++.|+.+||+|++++.+.+++.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 88888888887665544444444445555666666666666777888999999999999999999999999999988877
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 275 TAYKSGVQEG---LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQ 351 (1198)
Q Consensus 275 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 351 (1198)
...+...... .+.+....+...+..+. ++.++++.. ....|.+..++.+.+....++..+...+..+...+
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~-~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~ 1169 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIA-VTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLM 1169 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544332222 22222222211111111 111122221 22333333333344444455666667777888899
Q ss_pred HHHHHHHHHHccCCCCCccCC----------------CCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEE
Q 000984 352 AAAFKMFETINRKPEIDAYDT----------------KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTA 415 (1198)
Q Consensus 352 ~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~ 415 (1198)
.+.+|+.++++.++|...... ..++.|+..|.|+|+||+|+|+.. .+++|+|+||+|+|||++
T Consensus 1170 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gekv 1248 (1490)
T TIGR01271 1170 RSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRV 1248 (1490)
T ss_pred HHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEE
Confidence 999999999876554321100 011124556899999999999753 468999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHH
Q 000984 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495 (1198)
Q Consensus 416 ~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~ 495 (1198)
||||+||||||||+++|+|+++ .+|+|.|||+|+++++++++|++|+||||||.||+||||+||+.. ..++++++|++
T Consensus 1249 aIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei~~a 1326 (1490)
T TIGR01271 1249 GLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWKV 1326 (1490)
T ss_pred EEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHHHHH
Confidence 9999999999999999999997 799999999999999999999999999999999999999999854 46799999999
Q ss_pred HHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEE
Q 000984 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575 (1198)
Q Consensus 496 ~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i 575 (1198)
++.+++++++.++|+|+||.|||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.++++|+|
T Consensus 1327 L~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI 1406 (1490)
T TIGR01271 1327 AEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVI 1406 (1490)
T ss_pred HHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHh
Q 000984 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 576 ~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
+||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++...
T Consensus 1407 ~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 99999999999999999999999999999999975 789999987554
No 39
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-73 Score=636.68 Aligned_cols=503 Identities=23% Similarity=0.365 Sum_probs=420.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000984 111 YLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMA 190 (1198)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~ 190 (1198)
++|++..+..|......+-...++-..+|.++|+++...+..-.... .+|+++||+..|++.+|+.+-..+..++..+.
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~ 144 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALV 144 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHH
Confidence 57788888899988888888899999999999999999888777654 89999999999999999999888888888877
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHH
Q 000984 191 TFLGGFLIAFIKGWLLTLVMLSSI-PLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNY 269 (1198)
Q Consensus 191 ~~i~~~i~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 269 (1198)
.+++..+...+++|.+++.+...+ .+.+++..++.++-++..++....++...+.+.|.+.|....+.||.++.+.+.+
T Consensus 145 ~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l 224 (573)
T COG4987 145 LIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTAL 224 (573)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHH
Confidence 777776777677887766444333 3344455556666677777777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000984 270 KKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA-LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS-PCLSAF 347 (1198)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~ 347 (1198)
.+.-....+...+...+.++......++.....+ ..+|.++. +..|..+.......++.++....++..+. ..+...
T Consensus 225 ~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 225 EATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence 9888887777777777777766655544443333 44555432 23344442222222222233333333333 345677
Q ss_pred HHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHH
Q 000984 348 GAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKST 427 (1198)
Q Consensus 348 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSt 427 (1198)
.+...++.|+.+..+++++...++ .+.+.+.+ .++++||+|+||++ .+++|+|+||++++||++||+|+|||||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~~--~~~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFPD--EQTATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCCc--cccCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 788889999999998877654331 11111222 69999999999865 468999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh
Q 000984 428 VISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507 (1198)
Q Consensus 428 l~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 507 (1198)
|+++|.|-++|++|+|.++|.+++.++.+++|+.|++++|.+++|++|+|||+.+++|+++||+++++++.+++++.+++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Q 000984 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNA 587 (1198)
Q Consensus 508 l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~ 587 (1198)
.|+|++|.+||+|.+||||||||++|||++++|++++||||||.+||+.||+.+.+.+.+..++||+|+||||+..++.|
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~ 539 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM 539 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhhHhcCCCchhHHHHH
Q 000984 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1198)
|||+|||+|+++|+|+|.+|+++ ++.|+++++
T Consensus 540 drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 540 DRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred CEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999999999996 789988875
No 40
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.3e-72 Score=693.57 Aligned_cols=564 Identities=27% Similarity=0.387 Sum_probs=460.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++++++|.++.++ .+++++++.++..++....|++++.++|....... .. ...+.+++++++..+..++...
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VL-PTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566554433 33345555556666677777788888887543211 01 1111112222333333344344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
.......+...++|..++++++++|+++|++. ++|++++|+++|++.+.+.+...+...+..+..+++.+++++.++|.
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677799999999999999874 89999999999999999888877777777777777777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888898888888888888887777788888999999999999999999999999999998888777666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++++++|++++..+.++.|.+++++.+......++..+...+..+..+..+.+|+.+.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 55555444445555556667778888888999999998887666666666777777778888888899999998887644
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.+... .........+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 322111 111111234579999999999742 46899999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
||.|+++++.+++|++++||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
|||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHH
Q 000984 606 KLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1198)
+++++ ++.|++++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 68899988754
No 41
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=9.9e-72 Score=684.70 Aligned_cols=523 Identities=24% Similarity=0.342 Sum_probs=434.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 63 IGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142 (1198)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 142 (1198)
+++++.++..++.+..+++++.++|........ ......+...+++++++..++.+++.+.....+.+...++|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 83 (529)
T TIGR02857 7 LLGLLGALGALLIIAQAWLLARVIDGLISAGEP---LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERL 83 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666777888888865311111 12222333444556666778888888888889999999999999
Q ss_pred HHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000984 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1198)
Q Consensus 143 ~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~ 222 (1198)
++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|+..++..
T Consensus 84 ~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~ 162 (529)
T TIGR02857 84 LAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMI 162 (529)
T ss_pred HHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 9999999999999999999888788888888888888888999999999888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1198)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1198)
++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..........+..++..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02857 163 LIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSV 242 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888899999999999999999999999999999988777766665555444443333333333333
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcc
Q 000984 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382 (1198)
Q Consensus 303 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g 382 (1198)
++.+.+++..+..+.++.|.+++++.+......++..+...+..+..+..+.+|+.+.++.+++... . .....+..+
T Consensus 243 ~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~--~~~~~~~~~ 319 (529)
T TIGR02857 243 ALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-K--APVTAAPAP 319 (529)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C--cCCCCCCCC
Confidence 3333344555567889999887766655555667777777888899999999999999875432111 1 111111235
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++||+|+||+. ++++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|+++
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 79999999999854 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+||+|+|++|++||||||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999988899999999999999999999986
No 42
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.2e-70 Score=669.21 Aligned_cols=522 Identities=22% Similarity=0.298 Sum_probs=433.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q 000984 72 GLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDV 151 (1198)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 151 (1198)
.++....|++++.++|......+. .....+...++++.++..++.+++.++....+.+...++|.++++++++.|+
T Consensus 19 ~~~~l~~p~~~~~iid~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 94 (544)
T TIGR01842 19 NILMLAPPLYMLQVYDRVLTSGSV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATL 94 (544)
T ss_pred HHHHHHHHHHHHHHHHHhccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 334444555777788865422111 1222233334444555667778888888888999999999999999999998
Q ss_pred hhhhccCCcchHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 152 AFFDNETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISK 230 (1198)
Q Consensus 152 ~~f~~~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 230 (1198)
. ..+...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|+++++..+..+..++
T Consensus 95 ~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~ 167 (544)
T TIGR01842 95 R------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKK 167 (544)
T ss_pred c------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3 2356688899999999988766 4445555555444 346678889998888887778777776677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 231 MSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGG 310 (1198)
Q Consensus 231 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (1198)
..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+....+..++.....++.+++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 247 (544)
T TIGR01842 168 PLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGA 247 (544)
T ss_pred HHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888899999999999999999999999999999998888877776666655555555444554555556677888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEE
Q 000984 311 KLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVY 390 (1198)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~ 390 (1198)
.++..+.++.|.+++++.+......++..+......+..+..+.+|+.++++.+++.++. ...++..+.|+++|++
T Consensus 248 ~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~~i~~~~v~ 323 (544)
T TIGR01842 248 YLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEPEGHLSVENVT 323 (544)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCCCCeEEEEEEE
Confidence 889999999999988777666666788888888888999999999999998765442211 1112234579999999
Q ss_pred EEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCC
Q 000984 391 FSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1198)
Q Consensus 391 ~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1198)
|+|++. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+.+|++++||||+|+
T Consensus 324 ~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 402 (544)
T TIGR01842 324 IVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE 402 (544)
T ss_pred EEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcc
Confidence 999743 3579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC
Q 000984 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1198)
Q Consensus 471 l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1198)
+|++|++|||.++.++.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++|||||||
T Consensus 403 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt 482 (544)
T TIGR01842 403 LFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN 482 (544)
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhc
Q 000984 551 SALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 551 s~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|+||+++++.+.+.++++. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 483 s~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 483 SNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999875 6799999999999999999999999999999999999865
No 43
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-70 Score=593.18 Aligned_cols=490 Identities=31% Similarity=0.441 Sum_probs=410.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMAT-FLGGFLIAFIKGW 204 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~-~i~~~i~~~~~~~ 204 (1198)
.|...++.+...+--..|.|+.++++.|.-++ .+|.+...+..-...|+..+...+...+..++- .+..++....++|
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34445556666666677889999999988764 677666555555555555544444444444433 3445566677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1198)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1198)
+.+++.++++.++.++............+...+..++......++|-+..++|.|+.|+.+..+|.+.++...+...+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99988888887777776666666666666777788889999999999999999999999999999999998888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000984 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1198)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1198)
...++....-..+...........+...+..+.+|.|.++..-...++.+.++..+......+.++....+++++.+..+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 55444332223333334444455566667788999999887766677777787777777888888999999999998876
Q ss_pred CCCCccCCCCcccC-CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 365 PEIDAYDTKGKILD-DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 365 ~~~~~~~~~~~~~~-~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
.+..+.. +.++.+ ...|.|.|+||+|.|. +.+++|+++||++++|++++|||++|+||||++++|.|+|++++|.|
T Consensus 244 ~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 244 AEVSDAP-DAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred hhhccCC-CCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 6554322 222333 3467899999999995 35789999999999999999999999999999999999999999999
Q ss_pred EECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
.+||.|+++...+.+|+.||.||||..||++|+..||.+|.|..++++++.+++.++++++|+.+|+|++|.|||+|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
|||||||+|+||+++++|+||+|||+|||||.+||+.||.++++..+++|.++|+||++++.+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhcCCCchhHHHHH
Q 000984 604 HSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 604 ~~~l~~~~~~~~~~~~~ 620 (1198)
|+||++. +|.|++||.
T Consensus 481 h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHHc-CChHHHHhc
Confidence 9999998 899999884
No 44
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8e-66 Score=632.26 Aligned_cols=534 Identities=17% Similarity=0.138 Sum_probs=414.2
Q ss_pred hHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 45 PFYKLFTFAD-SADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1198)
Q Consensus 45 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1198)
..+.++++++ +.++ .+++++++.++.+++....+++++.+++... . .. . .. ...++++.++.+++.++.
T Consensus 4 ~~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~-~-~~-~--~~----~~~~~~~~~~~~~~~~~~ 73 (555)
T TIGR01194 4 AIGEILALLRSPFPA-ITAFSIALGLAGGLAIIALLASINNAIHEEN-F-LG-Q--GS----LFSFGGLCLLALLFRIGA 73 (555)
T ss_pred hHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-cc-c--hH----HHHHHHHHHHHHHHHHHH
Confidence 3556666666 4333 3333344444444444455556665554311 0 00 0 01 111333445556777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1198)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 203 (1198)
.++....+.+...++|..+++++++.|+.+|++. ++|++++|+++|++.+++.+.. +..++..+..+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 151 (555)
T TIGR01194 74 DIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLS 151 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999999999999999999999974 9999999999999999998864 6667777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHHHHHHHHHHHHHH
Q 000984 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK--QAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~ 281 (1198)
|.+++++++.+|+.+++..+..++.++...+.++..++..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...
T Consensus 152 ~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
T TIGR01194 152 VPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHI 231 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999998888888877777666666677777777788899999999999999999999854 446667766666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1198)
+..........+..++..+...++++++... +.++.|.+++++.+......++..+...+..+..+..+.+|+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll 308 (555)
T TIGR01194 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFG 308 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333322222233333333334444332 5788888888777777777788888888999999999999999987
Q ss_pred ccCCC--CCcc-CC-CCc---ccCCCcccEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 000984 362 NRKPE--IDAY-DT-KGK---ILDDIRGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432 (1198)
Q Consensus 362 ~~~~~--~~~~-~~-~~~---~~~~~~g~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l 432 (1198)
+.+.+ ...+ .. ... +.....+.|+++||+|+|++.+ .+++|+|+||++++||+++||||||||||||+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll 388 (555)
T TIGR01194 309 ERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLF 388 (555)
T ss_pred hhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 53111 1100 00 000 1112246799999999997532 23699999999999999999999999999999999
Q ss_pred hccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc
Q 000984 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1198)
Q Consensus 433 ~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 512 (1198)
+|+++|++|+|.+||+|+++++.+++|++++||+|||++|++|+++|+ .++.++++++++++.++++++++.+|+|+
T Consensus 389 ~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 389 CGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred hCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccccc
Confidence 999999999999999999999999999999999999999999999995 35678899999999999999999999999
Q ss_pred cchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHH-HH-hCCCeEEEEecCcchhhccCEE
Q 000984 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD-RI-MVNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 513 ~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~-~~-~~~~t~i~itH~~~~~~~~d~i 590 (1198)
+|. .+|||||||||+||||++++|+|||||||||+||+++++.+++.+. .. .+++|+|+||||++++..||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 994 7899999999999999999999999999999999999999988764 33 3689999999999999999999
Q ss_pred EEEeCCEEEEe
Q 000984 591 AVIHRGKIVEK 601 (1198)
Q Consensus 591 ~~l~~G~i~~~ 601 (1198)
++|++|+++|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999864
No 45
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.4e-65 Score=566.01 Aligned_cols=519 Identities=22% Similarity=0.303 Sum_probs=426.9
Q ss_pred HHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc
Q 000984 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDN 156 (1198)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~ 156 (1198)
..+.++-.+-|......+. ..+....+..+++.++..++-+++.......+.++-.++...++.+.++.+...-
T Consensus 41 ~~~lyMLQVyDRVL~S~s~----~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~-- 114 (580)
T COG4618 41 TGPLYMLQVYDRVLPSRSV----PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR-- 114 (580)
T ss_pred hhhHHHHHHHhhhccCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc--
Confidence 3444555666765543221 2222223333444555667788888888888888888888888888887776532
Q ss_pred cCCcchHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 157 ETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG 235 (1198)
Q Consensus 157 ~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1198)
..|+=..-+ +|.+.++.++.. ....++...|+ ...+.++|.+++++.++.++...+++.+.++-.+..++-.++.
T Consensus 115 --~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~-P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA 190 (580)
T COG4618 115 --GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWM-PLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEA 190 (580)
T ss_pred --CCCccccch-hhHHHHHHHHcCCCcchhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 333222222 699999999875 45555555565 4456788888988888888777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 236 QGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE 315 (1198)
Q Consensus 236 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 315 (1198)
.+...+++.....+..|..+|+++|+.....++|.+.............-..+....+.-.+-......++..|++++..
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 88888899999999999999999999999999999888887777666666666666666666667777778889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCC
Q 000984 316 EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395 (1198)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~ 395 (1198)
+.+|+|.++...+..-....++......+.++..++.+..|+.+.+...|+..+ ..+.+..+|.+.++++++.-|.
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg 346 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPG 346 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCC
Confidence 999999887643333223346667777788888999999999999987664321 2334445789999999998665
Q ss_pred CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCccc
Q 000984 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1198)
Q Consensus 396 ~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 475 (1198)
. ++++|+|+||++++||-++|+||||||||||.++|.|..+|.+|.|++||-|+++++.+.+-++|||.|||-.||.||
T Consensus 347 ~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 347 Q-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred C-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 4 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 476 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
|+|||+-..++.+++.+.++++.++.||.|.++|+||||.||++|..|||||||||+||||+|.+|.+++||||-|+||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 99999866668899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+.|..+.++|...+ +++|+|+||||++.+..+|+|++|++|++..+|+.+|.+++
T Consensus 506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 506 EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999998775 57999999999999999999999999999999999998765
No 46
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.7e-65 Score=619.98 Aligned_cols=462 Identities=26% Similarity=0.366 Sum_probs=421.0
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
..+++....+++..+.-.++.+++..++..+.|++...++|....... ........+.++++++...++.+++.+++.
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~--~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS--RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667777666777777777777788888888887764321 222334455566677888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++-.++|+|++++|++||. ++++|++++|+. |++.|++++...+...+..+.+.++.+++|++++|+|+
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++.+|++++...+..+++++..++.....++.++.+.|++.|++|||+.+.|.++..+|++..+++.+..++.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+..++..+..++++|+|++++.+|.+|+|.+++|.++...+..|+.++.++..++++...+.+|+.++++.++|.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.+.. ....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||
T Consensus 457 ~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 457 EGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred ccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 43321 12345578999999999999865 34799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|++++++++||++|++||||++||+|||||||++|+ +++++||+++||+.|++||||++||.||||+|
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 9999999999999999999999999999999999996 58999999999999999999999999999998
No 47
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-61 Score=592.82 Aligned_cols=464 Identities=19% Similarity=0.200 Sum_probs=358.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196 (1198)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 196 (1198)
.++.++..++..+.+.+...++|..+++++++.|+++|++. ++|++++|+++|++.+...+. .+..++..++.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44566777777888899999999999999999999999974 999999999999999998665 4566777778888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcH---HHHHHHHHHHH
Q 000984 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE---KQAMSNYKKFL 273 (1198)
Q Consensus 197 i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 273 (1198)
+++++++|.+++++++++|+.+++..++.+..++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 8999999999999888888888888888888888888888889999999999999999996 4433 34566776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 274 VTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1198)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1198)
++..+...+..........+..++......++++.++... ..+.+.+..+....+....++..+...+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLG---WADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444443333222222211122222222333332211 1122222222222233345777777788888899999
Q ss_pred HHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
.+|+.+....+++.+... .... +..+.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+
T Consensus 296 ~~ri~~l~~~~~~~~~~~--~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 296 FNKLNKLALAPYKAEFPR--PQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHhcccccccccc--cccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999998865433211111 1111 11357999999999974 246999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 000984 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513 (1198)
Q Consensus 434 g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 513 (1198)
|+++|++|+|.+||+|+++++.+++|++++||+|||++|++|+++| + +..++++++++++.+++.+++. .|+|.
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~- 444 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR- 444 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-
Confidence 9999999999999999999999999999999999999999999999 2 3456677776666666554443 23221
Q ss_pred chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEE
Q 000984 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIA 591 (1198)
Q Consensus 514 t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~ 591 (1198)
.+|.+||||||||++||||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 1478999999999999999999999999999999999999999999987654 4799999999999999999999
Q ss_pred EEeCCEEEEe
Q 000984 592 VIHRGKIVEK 601 (1198)
Q Consensus 592 ~l~~G~i~~~ 601 (1198)
+|++|+++|.
T Consensus 521 ~l~~G~i~e~ 530 (547)
T PRK10522 521 EMRNGQLSEL 530 (547)
T ss_pred EEECCEEEEe
Confidence 9999999976
No 48
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.5e-61 Score=594.44 Aligned_cols=458 Identities=20% Similarity=0.237 Sum_probs=392.4
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW--ALIYLALGAGSFLLSPAQSYFFAV 787 (1198)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1198)
++.+.+++++.++..+++.++..++....+++++.++|....... ...++ ...++++.++..++.++..++...
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777778888888888886543211 11111 111223455667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000984 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1198)
Q Consensus 788 ~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l 867 (1198)
.+.++..++|.++|+|++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 868 IILVMLPLIGVSGYTQ-MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 868 ~~l~~~pl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
++++.+|++.++...+ .+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888876665444 444455667777888899999999999999999999999999999999999999998888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
+...++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88788888888888888889999999999999999999999999999999999999999999999999999999876643
Q ss_pred CCCCCC-CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1027 DPSDES-GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1027 ~~~~~~-~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
+..... ....++..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221111 11112234679999999999753 369999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|+|++++ .+++|++|++|||||+||+|||||||+||+ ++++|||+++|++.|+++|||++||+||||.|-
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 465 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLG 465 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhc
Confidence 9999999 999999999999999999999999999995 479999999999999999999999999999863
No 49
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.3e-60 Score=601.42 Aligned_cols=465 Identities=28% Similarity=0.388 Sum_probs=411.2
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
..++++.+.++.++.+...+++.++.+++....+++++.++|....... ........++++++.++..++.+++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888888888899999999987753221 11122233344455666778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++.+++.+++.+++++.++|++
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
++++++.+|+.+++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1198)
.+....+...+..+..++++++|++++..|.+++|+++++..+...+..|+..+......++++..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66666666666667777888999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1026 ~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
.+... ...+.+..|+|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 464 ~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 464 IPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred CCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 43221 1112234678999999999986655689999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|+|+++++.+++|++|++|||||+||+|||||||+||. ++++|||+++|++.|++++||++||+||||.+-
T Consensus 542 g~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 612 (711)
T TIGR00958 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVG 612 (711)
T ss_pred CEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCccc
Confidence 99999999999999999999999999999999999995 478999999999999999999999999999863
No 50
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.2e-60 Score=583.49 Aligned_cols=448 Identities=30% Similarity=0.473 Sum_probs=399.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRI 796 (1198)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 796 (1198)
++ .+..+.++.++...+....++++..+++..... ......+...++++.++..++.++..++..+.+.+...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 666777777777777788888888888876511 1122233444555555777888888888888889999999
Q ss_pred HHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000984 797 RSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLI 876 (1198)
Q Consensus 797 r~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~ 876 (1198)
|.+++++++++|++||+ ++++|++++|+++|++.++..+.+....+...++.+++.+++++..+|.+++++++.+|++
T Consensus 88 r~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 88 RRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999 5889999999999999999999999666776888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHH
Q 000984 877 GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956 (1198)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1198)
.+...+..++.++..+..++..++.++.+.|+++|+++||+|+.++.+.++|.+..+...+...+.....+...++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888889999999999999999999999999999999999999999999999998888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 000984 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL 1036 (1198)
Q Consensus 957 ~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 1036 (1198)
..+...+++++|.+++..+.+++|.+++++.+...+..|+..+......++.+..+.+|++++++.+++..+.+.. .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~ 322 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---L 322 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999987654332211 2
Q ss_pred cCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH
Q 000984 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1198)
Q Consensus 1037 ~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~ 1116 (1198)
....|+|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|||||++|+|+|||+||+++++++
T Consensus 323 ~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 323 KDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHH
Confidence 334578999999999974 347999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1117 LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
||++|++|||||+||+|||+|||+||++ ++||||+++|||.|++||||++||+||||.|-
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg 460 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVG 460 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceec
Confidence 9999999999999999999999999964 79999999999999999999999999999985
No 51
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.4e-59 Score=584.39 Aligned_cols=461 Identities=19% Similarity=0.219 Sum_probs=389.7
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.+++++++.++..++....++++..++|....+... ......+..+++++.++..++.+++.++..
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888898899888898888888999999999876421111 111223344455566677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.+...++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+..++..++.+++.++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+.+++.....++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888899999999999999999999999999999999999999998888777776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV---------FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 1017 (1198)
....++...+..+..+++++++++.+. |.+|+|.+ +.+..+...+..|+..+......++++..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555455455554443 67776654 22335556678899999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC
Q 000984 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1198)
Q Consensus 1018 ~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp 1097 (1198)
++++.+++.+... ....+.+..++|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+| |
T Consensus 326 ~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 326 TFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9998765422111 11111123457999999998863 346999999999999999999999999999999999999 9
Q ss_pred CCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1098 ~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++|+|++||+|+++++.+++|++|++|||||+||+|||||||+||+ +++||||+++|++.|++||||++||+||||.|
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999995 47999999999999999999999999999986
No 52
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.4e-59 Score=591.68 Aligned_cols=463 Identities=19% Similarity=0.265 Sum_probs=405.4
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.+...++++++..++....++++..++|....... ......+.+.++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677777777777777777778888999999987653221 112222333444556667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++||+ ++++|++++|++ |.+.+.+++...+..++..++.+++.++++++++|+++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999 589999999998 99999999988888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++.+|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+||.|+.+.++|.+..++..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+..++..+..++++++|++++..|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777777888999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.... ....+...|.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 459 ~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 459 INKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 32211 0112334678999999999973 34799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|+++++++++|++|++|||||+||+|||||||++|..++++|||+++|++.|+++|||++||+||||.|.
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~ 606 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec
Confidence 99999999999999999999999999999999999843479999999999999999999999999999874
No 53
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-58 Score=583.91 Aligned_cols=453 Identities=20% Similarity=0.211 Sum_probs=401.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 714 NKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLI 793 (1198)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1198)
.++.++.+...++++++..++....++++..++|....... ......+.+.++++.++..++.+++.++....+.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (686)
T TIGR03797 131 LRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMD 208 (686)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777788888888898887653211 1122333444555666778889999999999999999
Q ss_pred HHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000984 794 QRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873 (1198)
Q Consensus 794 ~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~ 873 (1198)
.++|.++|+|++++|++||+ ++++|++++|++ |++.+++++...+...+..+..+++.++++++++|++++++++++
T Consensus 209 ~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 285 (686)
T TIGR03797 209 ASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA 285 (686)
T ss_pred HHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 589999999998 899999999988888888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHH
Q 000984 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1198)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1198)
|+.+++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+..........+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (686)
T TIGR03797 286 LVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFN 365 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888999998888899999999999999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000984 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1198)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 1033 (1198)
.++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.+...
T Consensus 366 ~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--- 442 (686)
T TIGR03797 366 AVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK--- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---
Confidence 78888888899999999999999999999999999999999999999999999999999999999998766532211
Q ss_pred CcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 000984 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1198)
Q Consensus 1034 ~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~ 1113 (1198)
..+....|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|+++++
T Consensus 443 ~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 443 TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1122345789999999999743 357999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
.+++|++|++|||||+||+|||||||++|+ + ++|||+++|++.|+++|+|++||+||||.+-
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ig 583 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGA-P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVIS 583 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCC-C-CCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 999999999999999999999999999995 3 8999999999999999999999999999874
No 54
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.7e-58 Score=570.26 Aligned_cols=530 Identities=14% Similarity=0.116 Sum_probs=413.0
Q ss_pred HHHHHHhhchhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADT----ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1198)
Q Consensus 46 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1198)
+.++++|+.+..+ .++++.+++.++..++....+++.+.+++..... +...+......+.+.++++.++..+..|
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~-~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR-SPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777765443 3455555556666667777888889988876532 1111221122223333344445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
+...+......++..++|..++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++..+.++.
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677788888888888877788888874 6899999999999999999999999999999988877776665
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Q 000984 202 -KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280 (1198)
Q Consensus 202 -~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 280 (1198)
.+|.+++++++.+|+.+++.+++.+.+.+...+.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999899999999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-h----CCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000984 281 VQEGLAAGIGLGMVMLIVF--CSYALSVWYGGKLIL-E----EGYNGGQVVNVMVA----VLTGSMSLGEASPCLSAFGA 349 (1198)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~~-~----~~~~~~~~~~~~~~----~l~~~~~l~~~~~~~~~~~~ 349 (1198)
.+...+.+....+..++.. ...+++++.|...+. . +.++.|.++..+.. +.....++..+......+..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666555544444332 122222333332322 2 56777765542222 23335577777788888999
Q ss_pred HHHHHHHHHHHHccCCCCCcc------CCC---C-------------cccCCCcccEEEEeEEEEcCCCCCCccccceeE
Q 000984 350 GQAAAFKMFETINRKPEIDAY------DTK---G-------------KILDDIRGDIELRDVYFSYPARPNEQIFSGFSI 407 (1198)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~------~~~---~-------------~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l 407 (1198)
+..+..|++++++.+++.+.. ... . .......+.|+++|++|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 999999999998653321100 000 0 001112356999999999974 2469999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC---
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--- 484 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~--- 484 (1198)
++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999875 56899999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHH
Q 000984 485 ----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1198)
Q Consensus 485 ----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1198)
+..++++++++++.+++++++.. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 33567889999999999998877 999999876 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 561 i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+.+.+++. ++|+|+||||++.++.||+|++|++
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99998773 8999999999999999999999974
No 55
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.8e-58 Score=566.59 Aligned_cols=461 Identities=18% Similarity=0.174 Sum_probs=392.8
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE--LKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+++++.+++++++.++..++....+++++++++........ ......++...+++++++..++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777788888888887777778888888888865321110 0001111222344456677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+..++..++.+++.++++++++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 867 LIILVMLPLIGVS-GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 867 l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
+++++++|++.++ .++..++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888876554 466677778888888889999999999999999999999999999999999999999999999888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTM-TAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1198)
.+...++..++..+..++++++|+++ ..|.+++|.++++..+... ...++..+......++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888777777778888999988 4789999999998877644 345777788888899999999999999998776
Q ss_pred CCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 000984 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1025 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I 1104 (1198)
+.+.... ....+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 323 ~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 323 EVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 5322111 1112245789999999999753 246999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
||+|+++++.+++|++|++|||||+||+|||+|||++|+ ++++|||+++|++.+++++||++ |+||||.|-
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vg 470 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLG 470 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhc
Confidence 999999999999999999999999999999999999995 47999999999999999999999 999999873
No 56
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.9e-58 Score=580.72 Aligned_cols=461 Identities=23% Similarity=0.331 Sum_probs=403.9
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
.++++.+.+++++.+...++++++..++....|+++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555667777777777777777778888888888887653211 111222333444455667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++| + ++++|++++|+ +|++.+++++...+...+..++.+++.++++++++|+++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 288 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998 5 47899999999 799999999999888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
++.++.+|+.+++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+...+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999887653
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+... .....+...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 449 ~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 449 PEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 3211 111122345789999999999743 35799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++++++|++|++|||||+||+|||||||++++ ++++|||+++|++.++++|+|++||+||||.+
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i 595 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQI 595 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence 9999999999999999999999999999999999995 47999999999999999999999999999987
No 57
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.3e-58 Score=581.62 Aligned_cols=464 Identities=17% Similarity=0.173 Sum_probs=405.6
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.+...++++++..++....|+++..++|....... ......+.+.++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667666677777777777777788888888887653211 111222334445556667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++||+ ++++|++++|+++| +.+++++...+..++..++.+++.++++++++|+++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 296 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT 296 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 58999999999988 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++.+|+.+++.++..++.++..++.++..++..+.+.|+++|+++||+++.|+.+.++|.+...+..+...+.....
T Consensus 297 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (710)
T TIGR03796 297 LIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLT 376 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999999999999999998888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 377 ~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 456 (710)
T TIGR03796 377 QILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 87778888888888889999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCC---C-CCcc-cCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 000984 1027 DPSDE---S-GTIL-EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1198)
Q Consensus 1027 ~~~~~---~-~~~~-~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~ 1101 (1198)
+.... . ...+ +...|.|+|+||+|+|++. ++++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 457 LLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred ccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 32110 0 0111 2346789999999999853 357999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
|++||+|+++++.+++|++|++|||||+||+|||||||++++ ++++||++++|++.++++|+|++||+||||.+.
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 999999999999999999999999999999999999999985 479999999999999999999999999999874
No 58
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.2e-57 Score=554.35 Aligned_cols=451 Identities=20% Similarity=0.214 Sum_probs=389.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIR 797 (1198)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr 797 (1198)
++.+..+++++++.+++.+..++++++++|....+.. .......+.++++++.++..++.+++.++....+.+...++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777778888889999999987642111 112233445555666777888899999999999999999999
Q ss_pred HHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000984 798 SMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877 (1198)
Q Consensus 798 ~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~ 877 (1198)
.++|++++++|..||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++.+|+..
T Consensus 81 ~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHH
Q 000984 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957 (1198)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1198)
++.+...++.++..++.++..++..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999999999999998888877777666666666665
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 000984 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE 1037 (1198)
Q Consensus 958 ~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 1037 (1198)
.+..++++.++++.+..|.+|+|.++++..+...+..|+..+......++++..+.+|+.++++.+++.... ...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~~~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APVTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCCCC
Confidence 555556556666777799999999999999999999999999999999999999999999999854322111 11111
Q ss_pred CCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 000984 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1038 ~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L 1117 (1198)
+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123679999999999854 3479999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|++|||||++|+|||||||++|. ++++|+++++|++.++++|||++||+||||.+
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 99999999999999999999999985 47899999999999999999999999999986
No 59
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.1e-57 Score=567.67 Aligned_cols=462 Identities=21% Similarity=0.285 Sum_probs=403.3
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.++++..+...++++++..++....++++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566666666666777777777788888888887653211 112233344455566677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
..+.++..++|.++|+|++++|++||+ ++++|++++|+ +|++.+++++...+..++..++.+++.++++++++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 58999999999 699999999988888888777777777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+++++.++..+++++..++..+..++.++.+.|+++|+++||+||.|+.+.++|.+..++..+...+.....
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989888888888888888999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+...+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88778888888888888999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.. .....+...|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 442 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 442 RSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred cCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 321 111122345789999999999743 34699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|+++++.+++|++|++|||||+||+|||||||++++ ++++++++++|++.++++|+|++||+||||.+.
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~ 588 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEec
Confidence 9999999999999999999999999999999999985 479999999999999999999999999999864
No 60
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=513.44 Aligned_cols=446 Identities=22% Similarity=0.296 Sum_probs=368.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 000984 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGA------GSFLLSPAQSYFFAVAGNKLIQ 794 (1198)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 794 (1198)
.+.+.++..+.-++....+.+..+.++.+..+ ... .......+.++-+ .+.++.-+++++...+.....+
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap-~~~---~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR 292 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAP-DTF---QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTR 292 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCc-chh---hHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHH
Confidence 33444444444455555666666666665432 111 1111222322222 2356677788888889999999
Q ss_pred HHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Q 000984 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVML 873 (1198)
Q Consensus 795 ~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~-~~~~~~l~l~~l~~~ 873 (1198)
.+-.++|+|+..+++.|+- .+.+|+++.-+.+..+.+. ++...+.++...++-+.+++++. ...+|+++++++.+.
T Consensus 293 ~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m 369 (790)
T KOG0056|consen 293 EIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMM 369 (790)
T ss_pred HHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 9999999999999999998 4789999999998888887 77777777777777666666644 457999999999888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHH
Q 000984 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1198)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1198)
.+++...........+..|++.....+..++..+++-+..|||-||+|+++.++|.+...++.+..++.........-+.
T Consensus 370 ~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Q 449 (790)
T KOG0056|consen 370 LLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQ 449 (790)
T ss_pred HHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877777777777777788888888888999999999999999999999999999999999998877666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000984 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1198)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 1033 (1198)
..+..+..++.-.+.++++..+..|+|+++.|.+|+..+..|+.........+|+...-+|++++++++++|..+.+. .
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~-a 528 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPG-A 528 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCC-C
Confidence 555555555555667778888999999999999999999999999999999999999999999999999888754332 2
Q ss_pred CcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 000984 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1198)
Q Consensus 1034 ~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~ 1113 (1198)
++....+|.|+|+||+|+|. |++|||+||||+++||++||+|||||+||||++++|+||||.++|+|+|||+||+++.
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606 (790)
T ss_pred CCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH
Confidence 33344689999999999996 4678999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
.++||++||+||||.+||++||..||+||++ .|+|||+.+|||.|++||-|.++|+||+|+|-
T Consensus 607 ~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred HHHHHHhcCcccCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 9999999999999999999999999999965 89999999999999999999999999999873
No 61
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.9e-56 Score=554.49 Aligned_cols=461 Identities=28% Similarity=0.396 Sum_probs=397.7
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVA 788 (1198)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1198)
+++.+.+++++.++..+++.++..+.....++++..+++....... .....+....++++.++..++.+++.++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 15 RLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666677777777776553211 11111222333445666778888888899999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000984 789 GNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALI 868 (1198)
Q Consensus 789 ~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~ 868 (1198)
+.+...++|.++++++++.|.++|+ +...|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++++
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 170 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLI 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhh
Q 000984 869 ILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1198)
Q Consensus 869 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1198)
+++++|+.+++.+...+++++..++.++...+..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.......
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T PRK11176 171 LIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888999988888888889999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCC
Q 000984 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1198)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 1028 (1198)
...+..++..+...+++++|++++..|.+++|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 330 (582)
T PRK11176 251 SDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999986654221
Q ss_pred CCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1029 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
.. ...++..++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 331 ~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 331 GK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred CC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 11 1122334679999999999753 3579999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1109 I~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+++++.+++|++|++|||||+||+|||||||.+|++++++|||+++|++.++++++|++||+|+||.+-
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig 475 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG 475 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeC
Confidence 999999999999999999999999999999999865458999999999999999999999999999874
No 62
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.1e-56 Score=551.24 Aligned_cols=460 Identities=27% Similarity=0.411 Sum_probs=408.9
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789 (1198)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1198)
++.+.++.++.+++++++.++.+++.+..++++..+++....... .....++..+++++.++..++.+++.++....+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777788888888888888888888888876543211 112223344566667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000984 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALII 869 (1198)
Q Consensus 790 ~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~ 869 (1198)
.++...+|..+++++++.|.++|+ +.+.|++++|+++|++.+++++...+..++..++.+++.++++++++|++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhH
Q 000984 870 LVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1198)
Q Consensus 870 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1198)
+++.|+.+++.++..++.++..++.++..++..+.+.|.++|+++||+++.++++.++|.+..++..+...+.....+..
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000984 950 FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS 1029 (1198)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 1029 (1198)
..+...+..+..++++++|++++.+|.+|+|.++++..+...+..|+..+......++++..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999876543211
Q ss_pred CCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1030 ~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
. ....+..++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 321 ~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 321 T---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 1 1112235689999999999754 35799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1110 ~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
++++.+++|++|++|||||+||+|||||||.++++++++|+++++|++.+++++++.+||+|+||.+-
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~ 464 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceec
Confidence 99999999999999999999999999999999853379999999999999999999999999999864
No 63
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.8e-56 Score=551.36 Aligned_cols=458 Identities=21% Similarity=0.265 Sum_probs=381.7
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1198)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1198)
+++..+.+++++.+...+++.++..++....++++..++|...............++++++++.++..++.+++.++...
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777777778888888889998887653211100011112233444455677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000984 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1198)
Q Consensus 788 ~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l 867 (1198)
.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..+..+++.++++++++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHh
Q 000984 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1198)
Q Consensus 868 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1198)
++++++|+.++...+..++.++..++.++..++....+.|.++|+++||+|+.|+++.++|.+..++..+...+.....+
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877888887877888888888899999999999999999999999999999998888877776665544
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 948 GG-FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 948 ~~-~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.. ..+..++..+...+++++++. +..|.+++|.++++..+...+..|+..+......++++..+.+|+.++++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 250 FLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 32 223333333322233333333 5789999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
.. . . ..+...++|+|+||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~-~-~--~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 329 YG-N-D--DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred CC-C-C--ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 11 1 1 11223578999999999974 34699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++.+++|++|++|||||+||+|||||||++|+ +++|+++++|++.++++++|++||+||||.+
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i 470 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPL 470 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 9999999999999999999999999999999999994 6899999999999999999999999999976
No 64
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.3e-54 Score=539.45 Aligned_cols=463 Identities=29% Similarity=0.446 Sum_probs=396.8
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVA 788 (1198)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1198)
.++.+.+++++.+.+.+++.++..++....++++..++|..+.... ......+..+++++.++..++.+++.++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666777777777788888888889998887543211 11122233344445555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000984 789 GNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALI 868 (1198)
Q Consensus 789 ~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~ 868 (1198)
+.++..++|..++++++++|.++|+ +.++|++++|+++|++.+++++...+..++..++.+++.++++++++|+++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhh
Q 000984 869 ILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1198)
Q Consensus 869 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1198)
+++.+|+.+++.++..++.++..++..+...+..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888999999889999999999999999999999999999999999999999999888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCC
Q 000984 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1198)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 1028 (1198)
...+...+.....++++++|++++..|.+|+|.++++..+...+..|+..+......+..+..+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 66665566666677788899999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1029 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
.........+..+.|+|+||+|+|++++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11111111123467999999999985433579999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1109 I~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+++++.+++|++|++|||||++|+|||||||.+|. ++++|+++++|++.+++++++++||+|+||.+
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i 470 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYL 470 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCcee
Confidence 99999999999999999999999999999999985 46899999999999999999999999999976
No 65
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.7e-54 Score=534.83 Aligned_cols=459 Identities=21% Similarity=0.268 Sum_probs=392.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.++.++++.++..++....+++++.++|....... ...+.+.++++.++..+..++..++..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888888888888888888899999999987653211 111222222333444455555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
....++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777888999999999999999 588999999999999999999999998888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+.+++...+.++.++..++.++..++..+.+.|+++|+++||+|+.++.+.+++.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888999999999999999999999999999999999999888888777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
+....+...+..+..++++++|++++.+|.+++|.++++..++..+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 76667766777777788889999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.... ....+...+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 320 EEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred cCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 21111 11112235679999999999742 3599999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++.+++|+++++|||||++|++||+|||.++. ++++|+|+++|++.+++++++.+||+|+||.+
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~ 465 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLV 465 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchh
Confidence 9999999999999999999999999999999999985 47899999999999999999999999999975
No 66
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-54 Score=493.19 Aligned_cols=446 Identities=22% Similarity=0.262 Sum_probs=395.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 724 GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEK 803 (1198)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ 803 (1198)
..++.++.+++.....+++...++..+.... ......+++.+++..+++.++.+.+......++.++..+||.+++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777777776654321 22344556667777888999999999999999999999999999999
Q ss_pred HHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000984 804 VIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883 (1198)
Q Consensus 804 ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~ 883 (1198)
+.+++..|-. ..|+|+..+.++..++.++.++...++.++.+.+..+..++.+++.+|.-++++++.+|++.++++++
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHH
Q 000984 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAA 963 (1198)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1198)
....++.+++.-..+..+++++.|.++|+.|+|+|++.+...++..+..+++++..++..+..-....+..++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888878888888888888888
Q ss_pred HHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCccc
Q 000984 964 SFYAGARLVED-GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042 (1198)
Q Consensus 964 ~~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~ 1042 (1198)
+..+.+..... |.+++...+.++.....++.|+..+.+.++.-..+.++.+.++.+++.+.+..+.............+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 77766666666 89999999999999999999999999999999999999999999999876643322111111112345
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++|++|+||++ +++++|+||+++||+++||||+||||||||+++|+||.+|++|+|.+||+|+++++.++||++++
T Consensus 321 i~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 6677999999864 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
+|||+|+||+|||||||+++++ ++|||||++|++.+++.||+.. |+|+||.+-
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ig 451 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDTVIG 451 (559)
T ss_pred eeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccchhc
Confidence 9999999999999999999964 7999999999999999999999 999999873
No 67
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-54 Score=533.96 Aligned_cols=437 Identities=21% Similarity=0.342 Sum_probs=377.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 000984 732 GVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811 (1198)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~f 811 (1198)
.++....+++++.++|........ ......|+++++++.++..++.+++.++.+..+.+...++|.++|++++++|++|
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 86 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEF 86 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 334455677778888865432111 1122334445555556677788888889999999999999999999999999999
Q ss_pred cccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000984 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMKGF 890 (1198)
Q Consensus 812 Fd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~ 890 (1198)
|+ ++++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|++++++++++|+.+++.+.+.++.++.
T Consensus 87 ~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 87 YL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred Hc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 5889999999999999999888888888888777766666655 58999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000984 891 SADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR 970 (1198)
Q Consensus 891 ~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 970 (1198)
.++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+........+..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999998888888877777676666666777788899999
Q ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeE
Q 000984 971 LVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSF 1050 (1198)
Q Consensus 971 l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf 1050 (1198)
++.+|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++.+... ...+...|+|+|+||+|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999998765432111 11122356899999999
Q ss_pred ECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccccc
Q 000984 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1198)
Q Consensus 1051 ~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1198)
+|+.. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99753 34799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1131 F~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|+|||||||++|+ ++++|+++++|++.++++++|.+||+|+||.+
T Consensus 401 f~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~ 445 (569)
T PRK10789 401 FSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEV 445 (569)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCccccee
Confidence 9999999999985 47899999999999999999999999999976
No 68
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.7e-54 Score=533.19 Aligned_cols=459 Identities=22% Similarity=0.276 Sum_probs=388.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
++++..+.++++..+.+.+++.++..++....++++..++|...... ......++++++.++..+..++..++..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-----DIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777777777777777777888888888888764321 1112223333334444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
....+...+++.++|+|++++|..+|+ +.+.|++++|+++|++.+...+...+..++..++.+++.++++++++|+++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777999999999999999 588999999999999999998888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+.+++.++..++.++..++.++..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888999999999999999999999999999999999999998888877777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998865542
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
+.... ....+...+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 320 RDPPG-AIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred CCCCC-CCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 21111 11112234679999999999743 3699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++.+++|++|++|||||+||+|||||||.+++ ++++|+|+++|++.++++++|.+||+|+||.+
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i 465 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVV 465 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchh
Confidence 9999999999999999999999999999999999995 47899999999999999999999999999975
No 69
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-54 Score=486.01 Aligned_cols=444 Identities=22% Similarity=0.305 Sum_probs=367.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 724 GTIAAMANGVILPIYGLLISSVIETFF--KPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801 (1198)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~ 801 (1198)
.+++.+.+-.+....+.++...++..- .+.+.......-.+..|.+..+...+|..++.+.+.++.+++.++.-.++|
T Consensus 35 ~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf 114 (591)
T KOG0057|consen 35 ALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVF 114 (591)
T ss_pred HHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333345566667777777777652 111111111223456677788889999999999999999999999999999
Q ss_pred HHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHH
Q 000984 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI-IAFTASWQLALIILVMLPLIGVSG 880 (1198)
Q Consensus 802 ~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li-~~~~~~~~l~l~~l~~~pl~~~~~ 880 (1198)
+++++++++||. +..+|.|.+++.+-...|..++...+..++..++-+..... +-.-..+..+++.+..+..+..+.
T Consensus 115 ~~~~~ld~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~T 192 (591)
T KOG0057|consen 115 RHLMSLDLSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFT 192 (591)
T ss_pred HHHHhhhHHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeE
Confidence 999999999999 47899999999999999999999888888888776655553 334466777777777777777777
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHH
Q 000984 881 YTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960 (1198)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1198)
+...++..+..++...+...++..+.|++.|..+||+||.|+++.++|+..+.++.+...+.....+...-....+....
T Consensus 193 i~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~ 272 (591)
T KOG0057|consen 193 IVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVA 272 (591)
T ss_pred EeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHH
Confidence 77777777778888889999999999999999999999999999999999999999988877766665555555555566
Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCc
Q 000984 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK 1040 (1198)
Q Consensus 961 ~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 1040 (1198)
.+.+.++|..-+.+|.+|+|+++....++.++..|+..+.....++.++..-+..++...+....+... ..+....+
T Consensus 273 ~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~ 349 (591)
T KOG0057|consen 273 LTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFG 349 (591)
T ss_pred HHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCC
Confidence 667777787778899999999999999999999999999999999888888777777654433322111 11223346
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|.|+|+||+|+|+ |+++||+|+||+|++||||||||++||||||++++|+||+| ++|+|+|||+||++++++++|+.
T Consensus 350 ~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 7899999999997 35569999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
||+||||..||++||.+||.||++ .+++||+.++||+|++||.|++||+||+|.|
T Consensus 427 Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred eeEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhH
Confidence 999999999999999999999964 8999999999999999999999999999987
No 70
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-53 Score=474.15 Aligned_cols=451 Identities=21% Similarity=0.195 Sum_probs=360.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA--LIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794 (1198)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1198)
+++.+.++++++++..+.......+-++++......+.. ....+++ ...=++++.+.+..|...+..|.+..++..
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~--~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~ 91 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA--YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS 91 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566666666666655444443333344444322111110 1111111 112246788889999999999999999999
Q ss_pred HHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000984 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1198)
Q Consensus 795 ~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~p 874 (1198)
+||.++|+++...+..-.. +.++||++||+..|++.+|+.+-..+.+.+..++..++..+.+.+++|.+++.+...+.
T Consensus 92 ~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 92 ALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999998888 47899999999999999999999999999999999888888888999999887765554
Q ss_pred HH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHH
Q 000984 875 LI-GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1198)
Q Consensus 875 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1198)
+. +++...+.++-++..+..+...+...+++.|.+.|....+.||+++.+.+.+.+..+.+.+...+...+........
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45566777777888888899999999999999999999999999999999999999999999888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 000984 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS-SFSSDSNKAKSAAASIFAIIDRESKIDPSDES 1032 (1198)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 1032 (1198)
.++..+..+..+.+.+..+..|..+......+.+.......++.-+. ..+.+..+...|+.|+.++.+.+++...+. .
T Consensus 250 ~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~-~ 328 (573)
T COG4987 250 LLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD-E 328 (573)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc-c
Confidence 77766666644444444555666653333333333334444444444 666788899999999999999888765431 1
Q ss_pred CCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1033 GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1033 ~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
..+ .... .++++||||+||+. +++||+|+||++++||||||+|||||||||++++|.|-|+|++|+|.++|.|++.+
T Consensus 329 ~~~-~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 329 QTA-TTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405 (573)
T ss_pred ccC-Cccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence 111 1111 79999999999864 55799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1113 ~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+.+++|+.|++++|.++||+||+||||+++++ ++||||+|+|++++++++++++.|+||+|.+
T Consensus 406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred ChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence 99999999999999999999999999999964 8999999999999999999999999999976
No 71
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.9e-53 Score=517.33 Aligned_cols=452 Identities=15% Similarity=0.120 Sum_probs=370.5
Q ss_pred hHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 707 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
.++++.+.+ ++++.++++++++++.++.....+++++.+++...... . .....++++.++..++.++..++.
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~ 77 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-----Q--GSLFSFGGLCLLALLFRIGADIFP 77 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----c--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667 88888888888888888877777777777765321100 0 011223344556667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
+..+.+...++|.++|+|++++|++||+ ++++|++++|+++|++.++.++.. +..++..++.+++.++++++++|.+
T Consensus 78 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 78 AYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 589999999999999999999864 7778888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchH--HHHHHHHHHhhhHHHHhHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE--KVMQLYKKKCEAPMKTGIRQG 943 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~--~~~~~~~~~~~~~~~~~~~~~ 943 (1198)
++++++++|+.+++..+..++.++..++.++..++.++.+.|.+.|+++||+|+.++ .+.++|.+..++..+...+..
T Consensus 155 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T TIGR01194 155 FAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988888877777777788888888999999999999999999999954 567888888888887776665
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Q 000984 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRE 1023 (1198)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 1023 (1198)
.......++..++..+...+.++++++. |.+++|.++++..++..+..|+..+......++++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~ 311 (555)
T TIGR01194 235 LIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5554444444444444444445555443 7899999999999999999999999999999999999999999997632
Q ss_pred CCCCCC---CCCCC----cccCCcccEEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1024 SKIDPS---DESGT----ILEDVKGEIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1024 ~~~~~~---~~~~~----~~~~~~G~I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
.+.++. ++... ++....++|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 211110 10000 1112346899999999997431 23699999999999999999999999999999999999
Q ss_pred cCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccc
Q 000984 1095 YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTS 1174 (1198)
Q Consensus 1095 ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt 1174 (1198)
|+|++|+|++||+|+++++.+++|+++++|+|||+||++|+++|+ . +++++++++++++.+++++++++||+||||
T Consensus 392 ~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 999999999999999999999999999999999999999999996 2 368999999999999999999999999999
Q ss_pred e
Q 000984 1175 R 1175 (1198)
Q Consensus 1175 ~ 1175 (1198)
.
T Consensus 468 ~ 468 (555)
T TIGR01194 468 T 468 (555)
T ss_pred c
Confidence 5
No 72
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.2e-52 Score=511.27 Aligned_cols=445 Identities=16% Similarity=0.197 Sum_probs=377.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQR 795 (1198)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1198)
++++.++..+++.++..++....++++..++|....... ......+.++++++.++..++.+++.++....+.++..+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777888889999986653211 112233444555566677788899999999999999999
Q ss_pred HHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000984 796 IRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD-ALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1198)
Q Consensus 796 Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~-~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~p 874 (1198)
+|.++|+|++++|+.. .|...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|
T Consensus 81 lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 81 LNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAV 152 (544)
T ss_pred HHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999843 256788999999999998877 4555555555444 446788999999999998888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHH
Q 000984 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954 (1198)
Q Consensus 875 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1198)
+++++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+....+..
T Consensus 153 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (544)
T TIGR01842 153 VLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777778878778888888889999999999999999999999999999999999998888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 000984 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGT 1034 (1198)
Q Consensus 955 ~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~ 1034 (1198)
.+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.+.. .
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~ 308 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----M 308 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----C
Confidence 777777788889999999999999999999999999999999999999999999999999999999876543211 1
Q ss_pred cccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh
Q 000984 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114 (1198)
Q Consensus 1035 ~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l 1114 (1198)
..+...+.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.
T Consensus 309 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 309 PLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 112234679999999999743 3479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1115 ~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+++|+++++|||||++|++||||||++++ ++++++++++|++.+++++++++||+|+||.+
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 99999999999999999999999999874 36899999999999999999999999999975
No 73
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-52 Score=453.16 Aligned_cols=392 Identities=26% Similarity=0.341 Sum_probs=347.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000984 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FT 860 (1198)
Q Consensus 782 ~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~-~~ 860 (1198)
..++...+..+.+.+--+.|.|+.++++.|+- +..+|.+...+..-...|+..+...+..++..++-+....+++ ..
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34566778888888999999999999999998 4779999988888888888888888888888877766666554 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhH
Q 000984 861 ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGI 940 (1198)
Q Consensus 861 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~ 940 (1198)
.+|+.+++.++++.+++++.....-..-...++..++.+++++...+++-+..|+|.|+.|+++..+|...++.+.++..
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999999999998888887777777888889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 000984 941 RQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII 1020 (1198)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 1020 (1198)
+.....+........+.......+...+...+..|.+|+|+++....++.+...|+..+.....++.++..-.+++++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 87766655555555566666667777888889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 000984 1021 DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1198)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G 1100 (1198)
+.+.+....++.++..+...|.|.|+||+|.|. |..|+|+|+||++++|+|+||||+||+||||+.++|+||||+++|
T Consensus 241 ~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 988776543332222224568999999999996 356899999999999999999999999999999999999999999
Q ss_pred eEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeee
Q 000984 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLL 1178 (1198)
Q Consensus 1101 ~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~ 1178 (1198)
+|.|||+||+++..++||+.||+||||.+||++||..||+||++ ++|+||+++|+|.|++|+||++||+||||.|.-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vge 395 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccch
Confidence 99999999999999999999999999999999999999999964 899999999999999999999999999999874
No 74
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-50 Score=493.33 Aligned_cols=212 Identities=25% Similarity=0.435 Sum_probs=176.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHH-Hh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~-~r 459 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999986 8999999999998776554 46
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
++++||+|+|.++. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998875 5999999986421 12222211 122334444 55445566677899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||++.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 227 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPA 227 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccc
Confidence 999999999999999999999999999999998864 46899999999999865 999999999999876653
No 75
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2e-49 Score=457.21 Aligned_cols=227 Identities=28% Similarity=0.484 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC----CCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~----~G~i~i~g~~~~~~~~~~ 457 (1198)
-++++|++..|....+ ..+++||||++.+||.+||||.|||||||++++|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999976532 25999999999999999999999999999999999999887 899999999998888765
Q ss_pred Hh----cceEEEcCCCC-CCcc--cHHHHHh----cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 458 IR----KKIGLVSQEPV-LFTG--SIKDNIA----YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ~r----~~i~~v~Q~~~-l~~~--ti~~Ni~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
.| +.|+|++|+|. .+|. ||.+-|. .......++...++.+. .+.+ .+|+.... ......||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~el---L~~V-gl~~~~~~--~~yPheLSGG 158 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL---LEQV-GLPDPERR--DRYPHQLSGG 158 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHH---HHHc-CCCChhhh--ccCCcccCch
Confidence 53 57999999995 4543 5544443 22211112222222221 1211 23333222 4577899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||+.||+||..+|++||+||||.+||+.+..+|.+.|+++. .+.++|+|||++..+.. ||||+||++|+++|.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999876 47899999999999876 99999999999999999
Q ss_pred hhhHhcCCCchh
Q 000984 604 HSKLVEDPEGAY 615 (1198)
Q Consensus 604 ~~~l~~~~~~~~ 615 (1198)
.+++++++...|
T Consensus 239 ~~~i~~~p~hpY 250 (539)
T COG1123 239 TEEILSNPQHPY 250 (539)
T ss_pred HHHHHhccCCcc
Confidence 999987654333
No 76
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-49 Score=491.47 Aligned_cols=221 Identities=28% Similarity=0.436 Sum_probs=177.3
Q ss_pred ccEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC---------
Q 000984 382 GDIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--------- 451 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--------- 451 (1198)
..|+++|++++|+... ..++|+||||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|+++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3599999999996422 246999999999999999999999999999999999999999999999997552
Q ss_pred -CcCHH---HHh-cceEEEcCCC--CCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCc---cchhc
Q 000984 452 -EFQLQ---WIR-KKIGLVSQEP--VLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGI---DTLVG 517 (1198)
Q Consensus 452 -~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~---~t~v~ 517 (1198)
+.+.. .+| ++|+||+|+| .++. .||+||+.++.. ..+..+..+ .+.+.++.+ |+ +....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~ 163 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQV--RIPEAQTILS 163 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChhhHHh
Confidence 22222 334 4799999998 5665 699999987521 112222111 112233333 44 23456
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEe
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIH 594 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1198)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 67788999999999999999999999999999999999999999999988753 7899999999998865 99999999
Q ss_pred CCEEEEecChhhHhc
Q 000984 595 RGKIVEKGTHSKLVE 609 (1198)
Q Consensus 595 ~G~i~~~g~~~~l~~ 609 (1198)
+|++++.|+++++..
T Consensus 244 ~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 244 QGEAVETGSVEQIFH 258 (623)
T ss_pred CCeecccCCHHHhhc
Confidence 999999999887754
No 77
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=485.07 Aligned_cols=214 Identities=24% Similarity=0.424 Sum_probs=177.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... +++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999987776543 467
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
++|++|++.++. .|++||+.++.... +.++..+ .+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998875 59999998753210 1111111 122333433 454445566678999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999998864 46899999999999875 99999999999987776543
No 78
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.5e-49 Score=481.54 Aligned_cols=218 Identities=30% Similarity=0.472 Sum_probs=174.1
Q ss_pred cEEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCcCHH
Q 000984 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~ 456 (1198)
.|+++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999986 799999999999877644
Q ss_pred H---Hh-cceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccc---hhcCCCCCC
Q 000984 457 W---IR-KKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDT---LVGEHGTQL 523 (1198)
Q Consensus 457 ~---~r-~~i~~v~Q~~~--l~-~~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t---~v~~~g~~l 523 (1198)
. +| ++++|++|+|. ++ ..|+++|+.++. ...+.++..+ .+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 44 358999986421 1112221111 112223333 3322 245567789
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 36899999999998865 99999999999998
Q ss_pred ecChhhH
Q 000984 601 KGTHSKL 607 (1198)
Q Consensus 601 ~g~~~~l 607 (1198)
.|+++++
T Consensus 238 ~g~~~~~ 244 (529)
T PRK15134 238 QNRAATL 244 (529)
T ss_pred eCCHHHH
Confidence 8877654
No 79
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.9e-49 Score=479.62 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=174.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 46999999999999999999999999999999999999999999999999987665444 3578
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
++|++|++.++. .|++||+.++... .+.++.++ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998875 5999999986421 11222111 122334443 454444556678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999988764 46899999999998865 999999999999876543
No 80
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.4e-46 Score=491.95 Aligned_cols=220 Identities=23% Similarity=0.447 Sum_probs=187.4
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|+++.|++. ++++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999532 3569999999999999999999999999999999999999999999999999865 46677889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|||||++.+|. .|++|||.++.. ..+.++.++ .+.+.++.+ |++........+||||||||++||||++
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 699999987421 112222211 122334443 5666667777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+++|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999988778999999999999875 999999999999999999998653
No 81
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.3e-49 Score=479.28 Aligned_cols=209 Identities=25% Similarity=0.445 Sum_probs=171.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHH-Hhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~-~r~ 460 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 4699999999999999999999999999999999999987 7999999999998776544 457
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCChHHHHHHh
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g~~lSgGqkqri~ 532 (1198)
+++|++|+|.++. .|++||+.++... ...++... .+.+.++.+ |++... ......||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 8999999998875 5999999876421 11122111 122334443 343222 2345689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999998764 46899999999999875 9999999999987544
No 82
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.9e-49 Score=482.32 Aligned_cols=211 Identities=26% Similarity=0.498 Sum_probs=167.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEEC---------------
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLID--------------- 446 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~--------------- 446 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CcC---HHHHhcceEEEcCC-CCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHH
Q 000984 447 --------GINLK-------EFQ---LQWIRKKIGLVSQE-PVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKF 504 (1198)
Q Consensus 447 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~ 504 (1198)
|.++. ..+ ...+|+.++|++|+ +.+|. .|+++|+.++... ...++..+ .+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHH
Confidence 33221 111 13457789999998 56775 5999999874321 12222111 12233
Q ss_pred HHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcc
Q 000984 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1198)
Q Consensus 505 i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~ 582 (1198)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.++++.+ ++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3443 555555666788999999999999999999999999999999999999999999988743 689999999999
Q ss_pred hhhc-cCEEEEEeCCEEEEecCh
Q 000984 583 TVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 583 ~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
.+.. ||+|++|++|++++.|++
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCH
Confidence 9865 999999999998765543
No 83
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-48 Score=433.40 Aligned_cols=236 Identities=28% Similarity=0.507 Sum_probs=220.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|.|+++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||.++..++..++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999743 3569999999999999999999999999999999999997 78999999999999999999999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+||||+|++|++|+++|+.+.. ..++++++++++.+++.+++..+|+|+++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997432 35678999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHH
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
+|+||||||++||+.+.+.+++.|++..+++|+|+|||+++.+..||||++|++|++++.|+|++|+++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988788999999999999999999999999999999999999986 5777777753
No 84
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-48 Score=473.47 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=173.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
++|++|+|.++. .|++||+.++... .+..+..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999998886 5999999986321 11222111 122334444 4444445566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
|++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999998764 46899999999998865 999999999998753
No 85
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.3e-48 Score=471.05 Aligned_cols=210 Identities=19% Similarity=0.296 Sum_probs=176.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3889999999963 3599999999999999999999999999999999999999999999999888777767777889
Q ss_pred EEEcCCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 463 GLVSQEPVL--F-------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 463 ~~v~Q~~~l--~-------~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+|++|+|.+ + ..|+++|+.++. ...+++.++++.. |++.........||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQF-----------GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHc-----------CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 458999986531 1123333343333 44444455667899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
|||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999988754 6899999999998865 9999999999999888766553
No 86
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-46 Score=499.33 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=165.9
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~- 473 (1198)
+++|+|+|+++++||+++|+||||||||||+++|.|.. .|.+|+|.+||.++.+.. ...|+.++||+|++.++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 468999999999886543 345778999999988775
Q ss_pred ccHHHHHhcCC----C-----CCCHHHHHH-HHHHhcHHHHHHhCCCCccchhcC-CCCCCChHHHHHHhHHHhhccCCC
Q 000984 474 GSIKDNIAYGK----D-----DATTEEIRV-ATELANAAKFIDKLPQGIDTLVGE-HGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 474 ~ti~~Ni~~~~----~-----~~~~~~~~~-~~~~~~~~~~i~~l~~g~~t~v~~-~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
.||+||+.|+. | ..+.++..+ ..+. +.+.+ .+.+-.+|.+|+ ....||||||||++|||||+.+|+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV--YMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH--HHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 69999998752 1 122222211 1110 11111 233345677765 456799999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcc-hh-hccCEEEEEeCCEEEEecChhhHh
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+++|||||++||+.+...+.+.|+++.+ ++|+|+++|++. .+ ..+|+|++|++|++++.|+++++.
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999998753 789999999974 44 459999999999999999998873
No 87
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.6e-48 Score=468.42 Aligned_cols=213 Identities=27% Similarity=0.458 Sum_probs=179.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh-cc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1198)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+....+ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999877766654 57
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|++|++.++. .|++||+.++.... .+.++ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998886 59999999864321 11111 112233333 444445566678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999998864 46899999999998865 999999999999988887665
No 88
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-48 Score=469.52 Aligned_cols=209 Identities=22% Similarity=0.372 Sum_probs=173.4
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcceEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~ 464 (1198)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 469999999999999999999999999999999999999999999999999876654 345778999
Q ss_pred EcCCCCCC-cccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 465 VSQEPVLF-TGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 465 v~Q~~~l~-~~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++|++.++ ..|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 99999876 46999999876321 12222111 122344444 5555556677889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999999999999999999999998864 46899999999998865 999999999999876654
No 89
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-45 Score=454.54 Aligned_cols=429 Identities=17% Similarity=0.157 Sum_probs=328.1
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 713 LNKPEIPVILAGTIAAMANGVILPI-YGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNK 791 (1198)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1198)
+.+++++.++.++++.++..++... ++++...+++..... .. . ...++++.++..++.+++.++....+.+
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 7 VWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS----LL--V--LPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----ch--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655554 355666666643210 00 1 1112222233345667888889999999
Q ss_pred HHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000984 792 LIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871 (1198)
Q Consensus 792 ~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~ 871 (1198)
+..++|.+++++++++|++||+ ++++|++++|+++|++.+...+. .++.++..++.+++.++++++++|++++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999 58899999999999999998766 47788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcch---HHHHHHHHHHhhhHHHHhHHHHHHHhh
Q 000984 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE---EKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1198)
Q Consensus 872 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1198)
++|+.+++.++..++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|.+..++..+...+.......
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 999998888888888888888888899999999999999999995 5544 456788888888777766665544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCC
Q 000984 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1198)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 1028 (1198)
...+...+......+.++++..+ +..+.+.+..+..+......|+..+......++.+..+.+|+.++++.+++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 235 AVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33332222222222233333322 112333344444444456689999999999999999999999998765432211
Q ss_pred CCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1029 ~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
.. .. ..+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 312 ~~--~~-~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 312 PR--PQ-AFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred cc--cc-ccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 11 11 11123579999999999742 369999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHH
Q 000984 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166 (1198)
Q Consensus 1109 I~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~ 1166 (1198)
+++++.+++|++|++|||||+||+||+++| + + ++++++++++++.+++++++.
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~ 439 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLE 439 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhh
Confidence 999999999999999999999999999999 4 2 678999999999999998875
No 90
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-48 Score=390.89 Aligned_cols=216 Identities=31% Similarity=0.546 Sum_probs=186.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC-CcCHHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 461 (1198)
.|+++|++.+|+. ..+|+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. +.+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999963 46999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+|+|+|+..|| .-|+.||+.++.-. .+.+ ...+.++++ |+.........+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V-----------GL~~ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV-----------GLADKADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc-----------CchhhhhhCccccCcHHHHHHHH
Confidence 99999999999 57999999976311 1222 223333444 44444455557899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
||||..+|+++|+|||||||||+....+.+.++++. .+.|.|+|||.+.+.+. ||||+.||+|+|+|+|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999998876 46899999999999987 8999999999999999999999875
Q ss_pred C
Q 000984 612 E 612 (1198)
Q Consensus 612 ~ 612 (1198)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 4
No 91
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.5e-45 Score=407.94 Aligned_cols=434 Identities=19% Similarity=0.207 Sum_probs=369.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 000984 729 MANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHME 808 (1198)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p 808 (1198)
.+..++....++++-++.|....+... .......++.+++.++..++.+++.+.+.+++.++-..|..++|....++|
T Consensus 33 ~~INiL~L~~~lyMLQVyDRVL~S~s~--~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~ 110 (580)
T COG4618 33 AVINLLALTGPLYMLQVYDRVLPSRSV--PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAP 110 (580)
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence 333444555666677777877653221 112222333344556677888899999999999999999999999998777
Q ss_pred ccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000984 809 VSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMK 888 (1198)
Q Consensus 809 ~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 888 (1198)
..--. .|+=..-+ +|.++++.|+...-...+...-..-+.+.++|.+++++.++.++...+++.+.++-.+..+
T Consensus 111 l~~~~-----~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~ 184 (580)
T COG4618 111 LLRRG-----SGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATR 184 (580)
T ss_pred HhhcC-----CCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 76532 33222222 4999999999886666666666666677788889999999999999999988888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000984 889 GFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAG 968 (1198)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 968 (1198)
+..++..+.....+.+..-+..|..+|++.|......++|.+....+.....+..-..+.+.+++..+-++....++.+|
T Consensus 185 ~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~G 264 (580)
T COG4618 185 KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLG 264 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888889999999999999999999999999999999999998888888888888999999999999999999
Q ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeee
Q 000984 969 ARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHV 1048 (1198)
Q Consensus 969 ~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nV 1048 (1198)
++++.+|++|.|.+++....+.....|+......+..+..+..+..|+.+++...|+..+ .-+.|..+|.+..++|
T Consensus 265 A~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l 340 (580)
T COG4618 265 AWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERL 340 (580)
T ss_pred eeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeee
Confidence 999999999999999999999999999999999999999999999999999987765432 1233445789999999
Q ss_pred eEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1049 sf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
++.=|+. ++|+|+||||+++|||-+|||||||||||||+++|.+.|.|.+|.|++||-|+++++.+.|=++|||.|||.
T Consensus 341 ~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 341 TAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred eecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 9976654 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHh-cCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1129 VLFNDTIRANIA-YGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1129 ~LF~gTIreNI~-~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
-||+|||+|||. |+ +++++|.|.+|++.|+.||.|.+||+||||.|.
T Consensus 420 eLF~GTIaeNIaRf~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 420 ELFDGTIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred eecCCcHHHHHHhcc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 999999999996 54 378999999999999999999999999999984
No 92
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=459.70 Aligned_cols=208 Identities=24% Similarity=0.430 Sum_probs=167.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999872 4699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhcHHHHHHhCCCCcc
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDA----------------TTE---EIRVA----------TELANAAKFIDKLPQGID 513 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 513 (1198)
|++|++.++. .|++||+.++.... ..+ .+.+. .....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998775 59999998753100 000 00000 0011233444444 554
Q ss_pred chh-cCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEE
Q 000984 514 TLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA 591 (1198)
Q Consensus 514 t~v-~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~ 591 (1198)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 345678999999999999999999999999999999999999999998875 47899999999999865 99999
Q ss_pred EEeCCEEE-EecChhhHhc
Q 000984 592 VIHRGKIV-EKGTHSKLVE 609 (1198)
Q Consensus 592 ~l~~G~i~-~~g~~~~l~~ 609 (1198)
+|++|+++ +.|+++++++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7888887654
No 93
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-46 Score=459.26 Aligned_cols=209 Identities=29% Similarity=0.407 Sum_probs=167.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HhcHHHHHHhC
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDA----------------TT----------EEIRVATE-------LANAAKFIDKL 508 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~----------------~~----------~~~~~~~~-------~~~~~~~i~~l 508 (1198)
+||+|+|.++. .|++||+.++.... .. .++.+.++ ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 99999999886 59999998753100 00 00111111 01122233333
Q ss_pred CCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-c
Q 000984 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1198)
Q Consensus 509 ~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1198)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 342 235566789999999999999999999999999999999999999999999876 3699999999999876 9
Q ss_pred CEEEEEeCCEEE-EecChhhHhc
Q 000984 588 DMIAVIHRGKIV-EKGTHSKLVE 609 (1198)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~ 609 (1198)
|+|++|++|+++ +.|+++++.+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7788776643
No 94
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.1e-44 Score=450.58 Aligned_cols=452 Identities=11% Similarity=0.065 Sum_probs=370.7
Q ss_pred hHhhhhhcCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIP-----VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDSRFWALIYLALGAGSFLLSPA 780 (1198)
Q Consensus 707 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1198)
+++++.+.+|++. .+++.+++.++...+....+++.+.+++........ .......++++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777765 566677777777888888899999999876532111 1111223444455566677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT 860 (1198)
Q Consensus 781 ~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~ 860 (1198)
..++......++..++|++.+++....++.||| +++|++++|+++|++.+.+.+...+..++..++.+++.+++++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d---~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD---SRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC---CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999 36899999999999999999999999999999999988888876
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHh
Q 000984 861 -ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939 (1198)
Q Consensus 861 -~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~ 939 (1198)
++|.+++++++.+|+.+++..++.+++.+..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCcCHHHHHH-HHHH---HHHHHHHHHHHhhhhhHHHH
Q 000984 940 IRQGMVSGGGFGASFFLLFA--FYAASFYAGARLVE-D----GKATFSDVFK-VFFS---LTMTAIGISQSSSFSSDSNK 1008 (1198)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~-~----g~~t~g~l~~-~~~~---~~~~~~~l~~~~~~~~~~~~ 1008 (1198)
.+.....+...++..++... ..++.++.|...+. . |.+|.|.+++ +..+ +..+..|+..+......+++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777776543 22333333443332 2 7889888776 4444 55668899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC------C-CC--CC-------------CcccCCcccEEEeeeeEECCCCCCccccccceE
Q 000984 1009 AKSAAASIFAIIDRESKIDP------S-DE--SG-------------TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNL 1066 (1198)
Q Consensus 1009 ~~~s~~ri~~~l~~~~~~~~------~-~~--~~-------------~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~ 1066 (1198)
+.++.+|++++++.+++... . ++ .. .......+.|+|+||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 99999999999975433210 0 00 00 0011134679999999999742 369999999
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCC--
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-- 1144 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-- 1144 (1198)
+|++||++|||||||||||||+++|.|+|+|++|+|.+|+ |++|++|||+|++|++|++|||.++..
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 678999999999999999999998731
Q ss_pred ----CCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1145 ----GDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1145 ----~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
++.++++++++++.+++++++.+ |.||||.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~ 576 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAV 576 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccc
Confidence 24678999999999999999988 9999996
No 95
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.5e-46 Score=455.24 Aligned_cols=209 Identities=29% Similarity=0.424 Sum_probs=168.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhcH-------HHHHHhC
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD-----------------ATT---------EEIRVATELANA-------AKFIDKL 508 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~-----------------~~~---------~~~~~~~~~~~~-------~~~i~~l 508 (1198)
+|++|+|+++. .|++||+.++... ..+ .++.++++.++. .+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 5999999875311 001 122222322221 2233333
Q ss_pred CCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-c
Q 000984 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1198)
Q Consensus 509 ~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1198)
|++ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 135566789999999999999999999999999999999999999999999875 3699999999999876 8
Q ss_pred CEEEEEeCCEEE-EecChhhHhc
Q 000984 588 DMIAVIHRGKIV-EKGTHSKLVE 609 (1198)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~ 609 (1198)
|+|++|++|+++ ..|+++++.+
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6788777653
No 96
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-46 Score=424.92 Aligned_cols=227 Identities=30% Similarity=0.491 Sum_probs=198.7
Q ss_pred CCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecC-
Q 000984 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLK- 451 (1198)
Q Consensus 378 ~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~- 451 (1198)
++..+.|+++|++++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |.+|+|.+||+++.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4456789999999999643 3579999999999999999999999999999999999997 57999999999997
Q ss_pred -CcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHHH-----HHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 452 -EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEI-----RVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 452 -~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~-----~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
..+...+|++++||||+||+|++|++|||.|+.. ..++++. ..+++.++ +++++++.++++|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccC
Confidence 4566788999999999999999999999997632 1333333 33444444 3445678899999999
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|||||||+|||||++++|+||||||||++||+++.+.++++|+++.+++|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999987 9999999999999999
Q ss_pred ChhhHhcCCC
Q 000984 603 THSKLVEDPE 612 (1198)
Q Consensus 603 ~~~~l~~~~~ 612 (1198)
+++++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999987543
No 97
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-46 Score=395.93 Aligned_cols=218 Identities=36% Similarity=0.584 Sum_probs=188.0
Q ss_pred EEEEeEEEEcCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHH
Q 000984 384 IELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWI 458 (1198)
Q Consensus 384 i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~ 458 (1198)
|++++|++.|+.. ....+|+|+||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 12568999999999999999999999999999999999999999999999999887764 555
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
|++||+++|++.|++ -||.+|+.|+..-. +. .++.+.++.+ |+.-.-+....+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----------gL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----------GLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhccCchhcCcchhhHH
Confidence 789999999999996 89999999975322 22 2233333333 455555666789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+|||||..+|+|||.|||||||||+|.+.|.+.+++.- -+-|+++|||.++.+++ ||||.||++|+++|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999998887753 37899999999999987 9999999999999999999998
Q ss_pred cCCC
Q 000984 609 EDPE 612 (1198)
Q Consensus 609 ~~~~ 612 (1198)
.++.
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 8764
No 98
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=374.45 Aligned_cols=220 Identities=34% Similarity=0.524 Sum_probs=199.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-----CeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-----G~i~i~g~~~~~--~~ 454 (1198)
..++++|+++.|++ +.+|+|||++|++++.+|++||||||||||++++.|+.+... |+|.++|+|+.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999963 569999999999999999999999999999999999998875 999999999975 58
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
.-.+|++||+|+|.|.-|..||.||+.+|..- .-++.++.+++.+.|++.++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 99999999999999999999999999998421 123567889999999887743 35677889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||+||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||.++...+ +|+...+-.|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998765 899999999999999999999
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
..++
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 8764
No 99
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.1e-44 Score=471.88 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=166.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cc
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TG 474 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ 474 (1198)
..+|+|+|+.++|||.++|+||||||||||+++|.|.++|. +|+|.+||+++.+... |+.++||+|++.++ ..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 46899999999999999999999999999999999999998 9999999998866542 67899999998777 56
Q ss_pred cHHHHHhcCCC------------CCCHHH----------H---HHHHHHh------cHHHHHHhC--CCCccchhcCC-C
Q 000984 475 SIKDNIAYGKD------------DATTEE----------I---RVATELA------NAAKFIDKL--PQGIDTLVGEH-G 520 (1198)
Q Consensus 475 ti~~Ni~~~~~------------~~~~~~----------~---~~~~~~~------~~~~~i~~l--~~g~~t~v~~~-g 520 (1198)
||+||+.|+.. +.+.++ + .+++... ..++.++.+ .+-.||.+|+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421 001111 0 0111000 012233333 33346778654 4
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcc--hhhccCEEEEEeCC
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS--TVRNADMIAVIHRG 596 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~--~~~~~d~i~~l~~G 596 (1198)
..||||||||++|||+++.+|++++|||||++||+.+...+.+.++++. .++|+|+++|++. ....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6799999999999999999999999999999999999999999999875 3789999999973 44569999999999
Q ss_pred EEEEecChhhHh
Q 000984 597 KIVEKGTHSKLV 608 (1198)
Q Consensus 597 ~i~~~g~~~~l~ 608 (1198)
+++++|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999885
No 100
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-46 Score=382.18 Aligned_cols=223 Identities=35% Similarity=0.570 Sum_probs=190.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+|+|||++|. ++.+++|+||+|++||+++++|||||||||++++|.|+++|++|+|.+||.++++++..+||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--hhcCCCCCCChHHHHHHhHHHhhc
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT--LVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
||-|..-|| +-||.|||.+-..- .+.+++.+- . .+.+..+ |++- ...+....|||||+||+.+||||.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r--~---~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR--A---DELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH--H---HHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 999999999 58999999863211 123333221 1 1112222 4442 345566889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
.+|+|+|+|||++||||-+.+.+|+-+.++.+ ++|+|+|||+++.. +.+|||.+|++|+|++.|+|++++.++...|
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 99999999999999999999999998877654 79999999999875 5699999999999999999999998865544
Q ss_pred H
Q 000984 616 S 616 (1198)
Q Consensus 616 ~ 616 (1198)
-
T Consensus 232 V 232 (309)
T COG1125 232 V 232 (309)
T ss_pred H
Confidence 3
No 101
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=390.50 Aligned_cols=229 Identities=29% Similarity=0.481 Sum_probs=184.5
Q ss_pred cEEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCcCHH
Q 000984 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~ 456 (1198)
-++++|++..|... ....++++|||+|++||.+|+||.||||||-..+.++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 37889998887532 235799999999999999999999999999999999999865 379999999999988877
Q ss_pred HHh----cceEEEcCCCCC-Cc--cc----HHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 457 WIR----KKIGLVSQEPVL-FT--GS----IKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 457 ~~r----~~i~~v~Q~~~l-~~--~t----i~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
.+| .+|+.++|+|-- .| -| |.|-|..... ....++..+.++.+++.+- ...+......
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 776 379999999942 22 13 4444443221 1123445555555554331 2345566778
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
||||||||+-||.||..+|++||-||||.|||.....+|.+.++++.+ +..+++|||++..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999988753 6899999999999987 9999999999999
Q ss_pred EecChhhHhcCCCchhHHHH
Q 000984 600 EKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1198)
|.|+.+++.+.+...|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH
Confidence 99999999887776666543
No 102
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=438.61 Aligned_cols=207 Identities=22% Similarity=0.342 Sum_probs=160.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999998842 589
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCC--------------CHHHHHHHHH----------HhcHHHHHHhCCCCcc-chhcC
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDA--------------TTEEIRVATE----------LANAAKFIDKLPQGID-TLVGE 518 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~--------------~~~~~~~~~~----------~~~~~~~i~~l~~g~~-t~v~~ 518 (1198)
|++|++..+..|+.+.+.-+.... ....+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976545556655543211000 0000000000 01122334444 453 23455
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.+.+. +.|+|+|||+..++.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 66789999999999999999999999999999999999999999988775 5799999999999875 99999999999
Q ss_pred EE-EecChhhHh
Q 000984 598 IV-EKGTHSKLV 608 (1198)
Q Consensus 598 i~-~~g~~~~l~ 608 (1198)
+. ..|+++...
T Consensus 224 i~~~~g~~~~~~ 235 (638)
T PRK10636 224 LFEYTGNYSSFE 235 (638)
T ss_pred EEEecCCHHHHH
Confidence 96 467766554
No 103
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=7e-44 Score=391.76 Aligned_cols=234 Identities=49% Similarity=0.807 Sum_probs=213.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 356999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|++++|+.|++||+.++.+....+++...++..++.+.++.+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986544456667777787888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHH
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999988778999999999999988999999999999999999999876 55666544
No 104
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-43 Score=391.66 Aligned_cols=240 Identities=32% Similarity=0.593 Sum_probs=218.5
Q ss_pred CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 379 ~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
...+.|+++|++++|+.. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 346789999999999743 2469999999999999999999999999999999999999999999999999998888888
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|++++|++|+|++|++|+++|+.+.. ....++++.+++..++.+.+..+|.|+++.+++.+.+||||||||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997542 23456677888888899999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHH
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
++|++|||||||++||+++.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|.++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999988777899999999999998899999999999999999999987656667766
Q ss_pred HH
Q 000984 619 IR 620 (1198)
Q Consensus 619 ~~ 620 (1198)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 54
No 105
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-42 Score=431.48 Aligned_cols=207 Identities=24% Similarity=0.435 Sum_probs=159.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----------LIV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----------CEE
Confidence 3889999999963 46999999999999999999999999999999999999999999999872 147
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HhcHHHHHHhCCC
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDD------------------ATTEEIRVATE-------------LANAAKFIDKLPQ 510 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~------------------~~~~~~~~~~~-------------~~~~~~~i~~l~~ 510 (1198)
++++|++.. ..+++.+++..+... ...+.+..... ...+.+.+..+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 888887643 236777765322100 00000000000 01122333333
Q ss_pred CccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCE
Q 000984 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADM 589 (1198)
Q Consensus 511 g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~ 589 (1198)
|+. .......||||||||++|||||+.+|++|||||||++||+++...+.+.|+++ +.|+|+|||+...+.. ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 332 24456789999999999999999999999999999999999999999999876 3699999999999876 999
Q ss_pred EEEEeCCEEEE-ecChhhHhc
Q 000984 590 IAVIHRGKIVE-KGTHSKLVE 609 (1198)
Q Consensus 590 i~~l~~G~i~~-~g~~~~l~~ 609 (1198)
|++|++|+++. .|++++.++
T Consensus 223 i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEECCEEEEecCCHHHHHH
Confidence 99999999974 577766543
No 106
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-43 Score=380.82 Aligned_cols=227 Identities=50% Similarity=0.857 Sum_probs=209.8
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|+++|++++|+. .+++++|+||++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999963 2359999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
++|++|+|++|.+|++||+.++.+....+++..+++.+++.+.++.+|.|+++.++.....||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876655667778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999888999999999999999998887653
No 107
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-43 Score=388.78 Aligned_cols=217 Identities=32% Similarity=0.558 Sum_probs=189.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++.+|++. . +++|+||+|++||+++|+|||||||||||++|.|+.+|++|+|.|||.++.++++.+ +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999642 2 999999999999999999999999999999999999999999999999999999875 689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
|+|+|+.-||. .||+|||.|+..... ++++.++++..++.+ .+..+...||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-----------lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-----------LLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-----------HHhcCcccCChhhHHHHHHHH
Confidence 99999999995 699999999865321 345555555555444 455566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||.++|+++|||||+|+||++....+...|+++.+ +.|+|.|||+...... +|||.||++|+|.+.|+|.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999998888888877654 5799999999987765 99999999999999999999998765
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 443
No 108
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=381.86 Aligned_cols=226 Identities=55% Similarity=0.908 Sum_probs=208.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999643 236999999999999999999999999999999999999999999999999998888788889999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|++|..|++||+.++......+++...++..++.+.++.+|.|+++..+.....||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556677777888888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999988788999999999999988999999999999999999988765
No 109
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.1e-43 Score=375.79 Aligned_cols=214 Identities=33% Similarity=0.527 Sum_probs=188.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+++|.|++.|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC-CCcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 463 GLVSQEPV-LFTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 463 ~~v~Q~~~-l~~~ti~~Ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
|||||++. -|.-||+|-+.+|+-.+ + .+.+.++++.+++.++ ..+.-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 99999974 56789999999985321 1 2345566666665544 3445567999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
.|||||.++|+|++||||||+||....-.+.+.++++. +++|+|+|.|+++.. +.||++++|++|+++..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999998876 369999999999876 569999999999999999999987
Q ss_pred cC
Q 000984 609 ED 610 (1198)
Q Consensus 609 ~~ 610 (1198)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 110
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-42 Score=381.56 Aligned_cols=232 Identities=50% Similarity=0.808 Sum_probs=211.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 245999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|++|++|++||+.++....+++++...++.+++.+.+..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566777778888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHH
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
+||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... ...|+.+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHH
Confidence 9999999999999999999999887668899999999999988999999999999999999888764 3444443
No 111
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.4e-42 Score=381.69 Aligned_cols=227 Identities=63% Similarity=1.044 Sum_probs=207.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|+++.|+...+.++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533356999999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|.+|..|++||+.++......++....++..++.+.+..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777788888889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887678999999999999888999999999999999999888654
No 112
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.3e-43 Score=356.64 Aligned_cols=223 Identities=35% Similarity=0.546 Sum_probs=189.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HH
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1198)
..|++++|+++|++ +.+++|+||+|++||.++|+|+||||||||+++|.|++.|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 35999999999964 4699999999999999999999999999999999999999999999999999988754 56
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCC---CHHHHHH----HHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHH
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDA---TTEEIRV----ATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQ 529 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~---~~~~~~~----~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkq 529 (1198)
|+++|+++|.--||+ -||+||+.|+.-++ +++.+++ .++++ |+... ...-...||||++.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~V-----------GL~~~~~~~~PsELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELV-----------GLRGAAADLYPSELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhc-----------CCChhhhhhCchhhcchHHH
Confidence 899999999999995 69999999864433 3333333 23333 44444 22335789999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|+|||||+..||+|+++|||||+|||.+...+.+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|...|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999998888877653 6899999999998876 89999999999999999999
Q ss_pred HhcCCCchhHHH
Q 000984 607 LVEDPEGAYSQL 618 (1198)
Q Consensus 607 l~~~~~~~~~~~ 618 (1198)
+.+..+...+++
T Consensus 233 l~~sd~P~v~qf 244 (263)
T COG1127 233 LLASDDPWVRQF 244 (263)
T ss_pred HHhCCCHHHHHH
Confidence 998755444443
No 113
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=8.8e-42 Score=403.95 Aligned_cols=208 Identities=32% Similarity=0.490 Sum_probs=165.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. +++|+|+||++.+|+++||||+||||||||+++|.|..+|++|+|..++. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999953 56999999999999999999999999999999999999999999998762 279
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCCH--HHHHHHHH------------------H-------hcHHHHHHhCCCCccc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDATT--EEIRVATE------------------L-------ANAAKFIDKLPQGIDT 514 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~--~~~~~~~~------------------~-------~~~~~~i~~l~~g~~t 514 (1198)
+|++|+|.+.. .||++.+..+...... .+++.+.. . ..+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 99999999985 4999999876532111 11111110 0 1112222222 3333
Q ss_pred hhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEE
Q 000984 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVI 593 (1198)
Q Consensus 515 ~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l 593 (1198)
. ...-.+||||||-|++|||||+.+||+|||||||++||.++..++.+.|.+. ++ |+|+|||+.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 3 4455689999999999999999999999999999999999999999999864 45 99999999999987 9999999
Q ss_pred eCCEEE-EecChhhHhc
Q 000984 594 HRGKIV-EKGTHSKLVE 609 (1198)
Q Consensus 594 ~~G~i~-~~g~~~~l~~ 609 (1198)
++|++. +.|+|+..++
T Consensus 224 d~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 224 DRGKLTPYKGNYSSYLE 240 (530)
T ss_pred cCCceeEecCCHHHHHH
Confidence 999875 5666665543
No 114
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.9e-42 Score=374.90 Aligned_cols=220 Identities=35% Similarity=0.653 Sum_probs=204.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|.|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
++|++|+|.++.+|++||+.+.. ....+++.++++..++.+.+..+|.|+++..++.+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998654 34667788888999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
No 115
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-43 Score=363.31 Aligned_cols=195 Identities=35% Similarity=0.511 Sum_probs=168.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.+++++++++|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.++.... ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4889999999974 56999999999999999999999999999999999999999999999998874433 479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.||. -||+||+.++..... .++..+.++.+++.++- +.....||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHHH
Confidence 99999999997 799999999865321 23455555555555544 4445689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
||..+|++|+||||++|||+.|...+++-+.++.+ ++|+++|||+++..-. +|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999887764 5899999999998654 9999999983
No 116
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.2e-42 Score=426.94 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=160.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC---CCCCCeEEECCeecCC--cCH-
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGINLKE--FQL- 455 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~---~~~~G~i~i~g~~~~~--~~~- 455 (1198)
..|+++|++++|+. .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|...++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999963 35999999999999999999999999999999999864 5788999754433211 111
Q ss_pred -----------HHHhcceEEEcCCCCCCcccHHHHHhcCCC-CCCH----HHHHHHHHHhc----------HHHHHHhCC
Q 000984 456 -----------QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATT----EEIRVATELAN----------AAKFIDKLP 509 (1198)
Q Consensus 456 -----------~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~----~~~~~~~~~~~----------~~~~i~~l~ 509 (1198)
..++..+++++|+|.+...+..+|...... ..+. +++.++.+..+ +.+.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 113455889999886554455455422111 0111 22222222221 12223333
Q ss_pred CCcc-chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-c
Q 000984 510 QGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1198)
Q Consensus 510 ~g~~-t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1198)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 432 2234445689999999999999999999999999999999999999999999886 6899999999999876 9
Q ss_pred CEEEEEeCCEEE-EecChhhHh
Q 000984 588 DMIAVIHRGKIV-EKGTHSKLV 608 (1198)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~ 608 (1198)
|+|++|++|++. ..|++++..
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHH
Confidence 999999999996 567766543
No 117
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.9e-42 Score=392.43 Aligned_cols=219 Identities=31% Similarity=0.530 Sum_probs=186.5
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998887554 57
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
++|+|++|++.+|. .|++||+.++.. ..+.+ ++.+.++.+ |+..........||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v-----------gL~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 89999999999995 799999997532 12222 223333333 4444445566789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||||+.+|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988754 6899999999999865 99999999999999999999987
Q ss_pred CCCc
Q 000984 610 DPEG 613 (1198)
Q Consensus 610 ~~~~ 613 (1198)
++..
T Consensus 231 ~p~~ 234 (343)
T TIGR02314 231 HPKT 234 (343)
T ss_pred CCCc
Confidence 6443
No 118
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=345.69 Aligned_cols=462 Identities=20% Similarity=0.235 Sum_probs=330.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196 (1198)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 196 (1198)
.+...+........++..-.++|..+.++++..|+..++.- .+++++.++++|+..|.-. ...+..+.+....++++.
T Consensus 62 ~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~il~l~s~ 139 (546)
T COG4615 62 MVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNISFA-FSRLPELVQAIILTLGSA 139 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhcccccceeeh-HhhhHHHHHHHHHHHHHH
Confidence 33444455566677888999999999999999999999875 9999999999999999844 344566788888889999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH--HHHHHHHH
Q 000984 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM--SNYKKFLV 274 (1198)
Q Consensus 197 i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~--~~~~~~~~ 274 (1198)
....++++.+.++.++.+.+.++...+...+..+.....++..++..+..+..+.|.+.++......+.. +.+....+
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~ 219 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchH
Confidence 9999999988777776776666666666666666677777788899999999999999998764332221 11211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVN-VMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1198)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1198)
...+.......+.-......++..+......+|... ........+.. .....+....++.++...++.+..+.++
T Consensus 220 ~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal----~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA 295 (546)
T COG4615 220 EYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLAL----SLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVA 295 (546)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 111111111111000111112222222222333222 11222222222 2222333345677777777788888899
Q ss_pred HHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
..++.+.-..++..+... +++.++++ .|+++||.|.|+.. ..-+..||++|++||+|-|+|.|||||||++++|.
T Consensus 296 ~~kiakle~~~~~a~~~~--~q~~p~~~-~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLt 370 (546)
T COG4615 296 FNKIAKLELAPYKADFPR--PQAFPDWK-TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLT 370 (546)
T ss_pred HHHHHHhhcCCccccCCC--CCcCCccc-ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHh
Confidence 988877654333222111 12223343 59999999999743 35688999999999999999999999999999999
Q ss_pred ccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCc
Q 000984 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGI 512 (1198)
Q Consensus 434 g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~ 512 (1198)
|+|.|++|+|.+||.++..-+++++|+-++-|+-|-|||+.++ |.+. ++++.+...++.-.+.... ++.+|-
T Consensus 371 GL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~~ 443 (546)
T COG4615 371 GLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDGR 443 (546)
T ss_pred cccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCCc
Confidence 9999999999999999999999999999999999999998766 4333 5666666666555444332 222221
Q ss_pred cchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEE
Q 000984 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 513 ~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i 590 (1198)
-+ ...||-|||.|+|+--|++-+.|||+|||=-+--||.-.+.+.+.+...+ +|||++.|||+-.+...|||+
T Consensus 444 fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 444 FS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred cc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHH
Confidence 11 14599999999999999999999999999999999999998877765443 489999999999999999999
Q ss_pred EEEeCCEEEEe
Q 000984 591 AVIHRGKIVEK 601 (1198)
Q Consensus 591 ~~l~~G~i~~~ 601 (1198)
+.|++|+++|.
T Consensus 519 l~~~~G~~~e~ 529 (546)
T COG4615 519 LEMRNGQLSEL 529 (546)
T ss_pred HHHhcCceeec
Confidence 99999999875
No 119
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-42 Score=368.86 Aligned_cols=215 Identities=38% Similarity=0.639 Sum_probs=191.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC-CcCHHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 461 (1198)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|++.|++|.|.++|.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999765 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 462 IGLVSQEP--VLFTGSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~Ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+|||+|+| ++|..||.|.+.||..+. +. +++.++++.+++.+ ...+...+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-----------~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-----------LLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-----------hccCCccccCCcceeeHHh
Confidence 99999999 899999999999986542 23 33445555555444 3455667999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCC--CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~--~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|.+|..+|+++|||||||+||+...+.+.+.++++.+. +|+|++||+++.+.. ||++++|++|+++.+|+|+++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999988654 799999999999877 999999999999999999998765
No 120
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.1e-41 Score=370.08 Aligned_cols=219 Identities=42% Similarity=0.738 Sum_probs=200.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|.|+.+|.+|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24699999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+|++|+|++|..|++||+.++......+++.+.++..++.+.+...|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999988655445667778888889989999999999999998899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988789999999999998754
No 121
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-42 Score=333.93 Aligned_cols=209 Identities=33% Similarity=0.571 Sum_probs=184.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|.+++|.|+|...+ =..+++|++||++||+||||||||||++++.|+..|.+|+|.|+|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999996432 2578999999999999999999999999999999999999999999998777653 5699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+++||..||. -||++||.+|... ...+++..++..+++..+.+++|. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 7999999998532 234678888999999998888873 799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++.+|++||||+|+|||.-...+...+.++. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998888877776665 46799999999998876 999999999999999999998865
No 122
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=385.92 Aligned_cols=217 Identities=34% Similarity=0.566 Sum_probs=190.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++.+|+ +..+++|+||+|++||++++.|||||||||||++|.|+..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 589999999996 35799999999999999999999999999999999999999999999999999999887 4689
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
++|+|+.-|| ..||+|||.||... ..+ +++.++++.+++.++- .++...|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHHH
Confidence 9999999999 58999999998651 122 3566677777665543 445578999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhhHhcCC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|||..+|++||||||+||||.+-...++.-++++.+ +.|.|+|||+.+.. .-+|||.||++|+|...|+|+|+...+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999998888888876543 78999999999875 569999999999999999999999876
Q ss_pred Cchh
Q 000984 612 EGAY 615 (1198)
Q Consensus 612 ~~~~ 615 (1198)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 5444
No 123
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.4e-42 Score=357.27 Aligned_cols=205 Identities=34% Similarity=0.512 Sum_probs=171.0
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHh
Q 000984 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r 459 (1198)
++++|++..|..... ..+|+++||+|++||+++|+||||||||||+++|.|+..|++|.|.++|.|+..++. ..+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 578999999964322 469999999999999999999999999999999999999999999999999998874 3344
Q ss_pred -cceEEEcCCCCCC-cccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhc-CCCCCCChHHHHH
Q 000984 460 -KKIGLVSQEPVLF-TGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSGGQKQR 530 (1198)
Q Consensus 460 -~~i~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~-~~g~~lSgGqkqr 530 (1198)
++||||+|+..|+ +-|++|||.++.. .... ++....++.. |+..... .....||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l-----------gl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL-----------GLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc-----------CChhhhccCCchhcCHHHHHH
Confidence 6799999999988 5699999995321 1111 2222222222 4443333 5567899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1198)
+||||||+.+|+|++.||||++||.++.+.+.+.++++. .++|+|+|||+......|||++.|++|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999998874 368999999999999999999999999954
No 124
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.9e-42 Score=339.01 Aligned_cols=207 Identities=29% Similarity=0.507 Sum_probs=183.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r~ 460 (1198)
|+|+||+.+|+.. +++|+||||+|++||++.|+||||||||||+++|+++..|+.|+|.++|+|+..+. ..-+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 67999999999999999999999999999999999999999999999999998775 455799
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+||+|+||-.|. .-||.||++|+..- .-.+++.++++.++|.+....+| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999877 57999999986421 11356777888888888777777 4799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
|||+..+|++||-||||.+||+++...|.+.+.++- .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999998888763 58999999999999987 57899999999986543
No 125
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-42 Score=352.81 Aligned_cols=226 Identities=30% Similarity=0.479 Sum_probs=185.2
Q ss_pred cEEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-CHHHHhc
Q 000984 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~ 460 (1198)
.++++|+++.|+.... .++|+||||+|.+||.+||+|+||||||||.++|+|+.+|++|+|.++|.++... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4889999999975321 2599999999999999999999999999999999999999999999999776554 3346678
Q ss_pred ceEEEcCCCC-CCc--ccHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPV-LFT--GSIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~-l~~--~ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
.|-+|+|||. -+| -||++-|.=+.. .....+++++++.+++.+. ...+....|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~----------~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS----------FLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH----------HHhcCchhcChhHHHHHHH
Confidence 9999999995 232 467666642211 1223456666666655432 3355667899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCC--eEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~--t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||.-+|++||||||||+||+.....|.+.+.++.+++ |.|+|||++..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999998887655 99999999999987 999999999999999999999876
Q ss_pred CCchhHHH
Q 000984 611 PEGAYSQL 618 (1198)
Q Consensus 611 ~~~~~~~~ 618 (1198)
+...|.+.
T Consensus 233 ~~h~ytr~ 240 (252)
T COG1124 233 PSHPYTRE 240 (252)
T ss_pred CccHHHHH
Confidence 55555543
No 126
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-42 Score=348.41 Aligned_cols=213 Identities=33% Similarity=0.550 Sum_probs=184.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r 459 (1198)
.|+++||+..||+ ++.+|+||||+|++||+|+|+||||||||||+++|.|+.+|++|+|.++|.++.... +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 467999999999999999999999999999999999999999999999999988776 66778
Q ss_pred cceEEEcCCCCCC-cccHHHHHhcCCCCC-----------CHHHH---HHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 460 KKIGLVSQEPVLF-TGSIKDNIAYGKDDA-----------TTEEI---RVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~-----------~~~~~---~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
+++|+++|++.|. ..||-+|++.|.-.+ +.++. .++++.+ |+.-..-.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv-----------gi~~~A~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV-----------GILDKAYQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc-----------CcHHHHHHHhccCC
Confidence 9999999999988 579999999875432 23332 3333333 44444455667899
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
|||+||++|||||+++|+|+|-|||+|+|||.+.+.+.+.+++.. .+.|+|+.-|.+++.+. ||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 46899999999999865 999999999999999
Q ss_pred cChhhHh
Q 000984 602 GTHSKLV 608 (1198)
Q Consensus 602 g~~~~l~ 608 (1198)
|+++|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999863
No 127
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=386.15 Aligned_cols=222 Identities=26% Similarity=0.476 Sum_probs=188.6
Q ss_pred ccEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc------
Q 000984 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------ 453 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~------ 453 (1198)
..|+++|++|+|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3589999999996421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcC
Q 000984 454 ----------QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGE 518 (1198)
Q Consensus 454 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~ 518 (1198)
+...+|++++||+|+| ++|..|++|||.|+... .+.++..+ ...+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3567889999999998 79999999999986321 23333221 112344444 664 46788
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCC
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1198)
.+.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.+.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 4789999999999875 59999999999
Q ss_pred EEEEecChhhHhcC
Q 000984 597 KIVEKGTHSKLVED 610 (1198)
Q Consensus 597 ~i~~~g~~~~l~~~ 610 (1198)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
No 128
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=360.27 Aligned_cols=210 Identities=29% Similarity=0.495 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+++|+|++.|.+|+|.+.|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999632 59999999999999999999999999999999999999999999999987765443 4589
Q ss_pred EEEcCCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 463 GLVSQEP---VLFTGSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~Ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
|||||.. |-|.-||+|-+.+|.... +.+++.++++.+++.++. ...-..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHH
Confidence 9999965 778999999999874321 247788888888776543 3334569999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|+.|||||.++|++|+|||||+++|+.++..|.+.|+++.+ ++||++|||+++.+.. +|+|+.| |+++...|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999998865 8999999999998865 9999999 5688899999998
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
No 129
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2e-41 Score=369.49 Aligned_cols=220 Identities=50% Similarity=0.832 Sum_probs=197.6
Q ss_pred CCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 379 ~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
...+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34577999999999975333469999999999999999999999999999999999999999999999999887777778
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+++++|++|+|.+|..|++||+.++.......++.+..+...+.+.++.+|.|+++.+.+...+||||||||++||||++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999865544444555555556778889999989999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
++|+++||||||++||+++.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999988777899999999999988999999999974
No 130
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.9e-41 Score=409.81 Aligned_cols=193 Identities=23% Similarity=0.371 Sum_probs=155.3
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE-----------ECCeecCCcCH
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-----------i~g~~~~~~~~ 455 (1198)
++++++|+. ...+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+...
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348899963 235899999 8999999999999999999999999999999999997 89988765432
Q ss_pred H--HHhcc----eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 456 Q--WIRKK----IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 456 ~--~~r~~----i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+ ..+.+ +.|++|.|.+|.+|++||+... ...+++.++++.. |++........+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERL-----------GLENILDRDISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHH
Confidence 1 11123 4456667788889999999742 1123333333333 4444455666789999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999987668999999999999876 9999999753
No 131
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=357.51 Aligned_cols=217 Identities=32% Similarity=0.521 Sum_probs=183.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe---ecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~---~~~~~~~~~~r 459 (1198)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++...+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 4788999999964 45899999999999999999999999999999999999999999999999 66653333 4
Q ss_pred cceEEEcCCCCCC-cccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 460 KKIGLVSQEPVLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
++||+|+|+.-|| ..||.+||.||..- ....++.+.+++++|...- .....+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHHHHH
Confidence 6899999999988 68999999999721 1234555556666654432 34457899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
+||||||..+|++||||||+++||++..+.+++-+++... +.|+++|||+.+... .||||++|++|+|...|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999998888887776643 689999999998765 5999999999999999999999
Q ss_pred hcCCCchh
Q 000984 608 VEDPEGAY 615 (1198)
Q Consensus 608 ~~~~~~~~ 615 (1198)
...++..|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88765443
No 132
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.3e-41 Score=368.05 Aligned_cols=210 Identities=38% Similarity=0.613 Sum_probs=178.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCCeEEECCeecCCcC--HH
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLIDGINLKEFQ--LQ 456 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~-----~~~~G~i~i~g~~~~~~~--~~ 456 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|++ +|.+|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999964 36999999999999999999999999999999999999 999999999999988776 56
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCC--CCCCChHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---T----TEEIRVATELANAAKFIDKLPQGIDTLVGEH--GTQLSGGQ 527 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~--g~~lSgGq 527 (1198)
.+|++++|++|++.+|..|++||+.++.... . ++++.++++.. |++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHH
Confidence 6788999999999999889999998753211 1 12233333333 333333333 47899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999999999988656899999999998764 99999999999999998765
Q ss_pred H
Q 000984 607 L 607 (1198)
Q Consensus 607 l 607 (1198)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 3
No 133
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=368.42 Aligned_cols=218 Identities=31% Similarity=0.473 Sum_probs=186.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCeEEECCeecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
.|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999984 6899999999999888888888
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
++++|+||+|.+|..|++||+.++.... .++++.+.++.+++.+++ .....+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 9999999999999999999998752110 112233334444332222 2345667789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+||||++++|+++||||||++||+.+...+.+.+.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999886 5999999999999999999998764
No 134
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=365.66 Aligned_cols=217 Identities=35% Similarity=0.566 Sum_probs=182.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 469999999999999999999999999999999999999999999999999887664 56788
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
.++|++|++.+|.. |++||+.++.. ..+.++..+.. .+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV-----LEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999875 99999987532 12222222111 1223333 44444455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999999988654
No 135
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=362.63 Aligned_cols=208 Identities=29% Similarity=0.518 Sum_probs=178.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-CHHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~~ 461 (1198)
.+++++++..|| +..+++||||++++||+.||.|.||+|||||+++|.|+|+|++|+|.+||+.++-- +.+.+|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 489999999997 35689999999999999999999999999999999999999999999999999855 45667889
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
||+|.|++.|+ +-|+.|||.+|.+.. +..+..+ .+.+..+++ |++-...+....||-|||||+.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 99999999999 569999999997642 2222221 122233333 6666677777889999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
|||++|++||||||||-|-|.....+++.++.+. +++|+|+|||++..+.. |||+-||.+|+++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 9999999999999999999998888888888775 58999999999999877 99999999999863
No 136
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=373.39 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=186.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+|. ++..||+|||.|+... .+. +++.++++.. |++........+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV-----------GMQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 5678999999986321 222 2333444444 344444555678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988753 7899999999999888999999999999999999988654
No 137
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.1e-41 Score=382.79 Aligned_cols=207 Identities=33% Similarity=0.538 Sum_probs=179.0
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----hcceEEEcCCCCCCc-
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT- 473 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~- 473 (1198)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..++ |++++||+|++++|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988877 789999999999996
Q ss_pred ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEe
Q 000984 474 GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlD 547 (1198)
.||+|||.++... .+. +++.++++.+ |++...++...+||||||||++|||||+++|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 112 2233333333 5555566777799999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 548 EATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998774 3799999999999865 5999999999999999999999876544443
No 138
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-40 Score=375.17 Aligned_cols=209 Identities=31% Similarity=0.488 Sum_probs=175.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
-++++|++.+|+. .++|+|+||++.+||.++++|.||||||||+|.|.|.|+|++|+|.+||....-.++.+ ....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 56999999999999999999999999999999999999999999999999998766544 4577
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|+.|.||+.|+ +-||.|||-+|..... ..+..+.++ +.+..+ |++........+||+||||.++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 99999999998 5799999988875332 233333222 223333 221114444457999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
||+..+++|+|||||||+|+.+..+.+++.++++. ++.++|+||||++.+.. ||||.||.||+.+..
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 99999999999999999999998888889998876 67999999999998865 999999999998754
No 139
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=380.76 Aligned_cols=216 Identities=30% Similarity=0.536 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .|++|||.|+... .+. +++.++++.. |+..........||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~-----------gl~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-----------DLAGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 99999999995 5999999987431 122 2333333333 3444445566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+.+.+. .||+|++|++|+|++.|+++++..++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 689999999999875 599999999999999999999987755
Q ss_pred ch
Q 000984 613 GA 614 (1198)
Q Consensus 613 ~~ 614 (1198)
..
T Consensus 230 ~~ 231 (351)
T PRK11432 230 SR 231 (351)
T ss_pred ch
Confidence 43
No 140
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=381.43 Aligned_cols=218 Identities=29% Similarity=0.514 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24699999999999999999999999999999999999999999999999999887764 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .||+|||.|+... .+. +++.++++..+ ++........+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE-----------LEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCChhhCCHHHHHHHHHHH
Confidence 99999999995 6999999987431 122 22334444444 444445556789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988754 689999999999775 599999999999999999999987754
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 433
No 141
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.9e-40 Score=354.99 Aligned_cols=204 Identities=34% Similarity=0.600 Sum_probs=180.6
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.+.++++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4569999999999742 246999999999999999999999999999999999999999999999999998888888889
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+++|++|+|.+|++|+++|+.+... .+.+++.++++ +++....|||||+||++||||++.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999986432 33333332221 3456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++.+.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999888999999999999988764
No 142
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=372.14 Aligned_cols=220 Identities=33% Similarity=0.583 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC--HHHHh
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--~~~~r 459 (1198)
|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999997643 45678
Q ss_pred cceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc--chhcCCCCCCChHHHHHHhH
Q 000984 460 KKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 460 ~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~v~~~g~~lSgGqkqri~l 533 (1198)
++++||||+| .+|..|++|||.++... .+.++..+.. .+.++.+ |++ +........||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-----KRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH-----HHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 67889999999975321 2333222111 1222222 443 44567778999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999885 5999999999999999999988654
No 143
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=380.44 Aligned_cols=222 Identities=35% Similarity=0.580 Sum_probs=186.8
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 356999999999999999999999999999999999999999999999999998876544 47
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++|+|++|++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999885 799999987532 122222211 112334443 55555566678899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
|+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999988753 6899999999999875 99999999999999999999986543
No 144
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=361.82 Aligned_cols=220 Identities=34% Similarity=0.631 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999888777888899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|+|.+|..|++||+.++..... .+++.+. ++.+ |++ .........||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---------LSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHH---------HHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987532111 1222222 3333 343 23456677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...+.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999988753 7899999999999875 999999999999999999998765433343
No 145
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2e-40 Score=364.24 Aligned_cols=222 Identities=28% Similarity=0.509 Sum_probs=185.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.... |.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEI-------RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|+||+|.+|.+ |++||+.++........+ ........+.+.++.+ |++...+.....||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999875 999999875422110000 0000111223445555 666667778889999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999998875 57899999999999865 999999999999999999988653
No 146
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-40 Score=372.10 Aligned_cols=220 Identities=28% Similarity=0.533 Sum_probs=183.6
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----cCHHH
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~ 457 (1198)
|+++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997431 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHh
Q 000984 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~ 532 (1198)
+|++++||+|+| .+|..|+.||+.|+... .+.++.... +.+.++.+ |+. ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKI-----AAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 889999999998 78999999999986432 222222211 11223333 443 2345677899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||||+.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998765 4789999999999885 5999999999999999999998654
No 147
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.9e-40 Score=380.55 Aligned_cols=221 Identities=30% Similarity=0.489 Sum_probs=188.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .||+||+.|+... .+.++... .+.+.++.+ |++........+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE-----RVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 7999999987432 12222111 122334444 56666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|+++|||||||+||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999988754 689999999999875 599999999999999999999988755444
No 148
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=356.35 Aligned_cols=414 Identities=17% Similarity=0.177 Sum_probs=294.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 163 VVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG---------------WLLTLVMLSSIPLLAMSGGVMAIM 227 (1198)
Q Consensus 163 i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---------------~~l~l~~~~~~~~~~~~~~~~~~~ 227 (1198)
.=.|++.|+..+.+........++..+.+++...++..-.+ ..+..++++.+++-.++..++++.
T Consensus 150 pDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~ 229 (604)
T COG4178 150 PDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRP 229 (604)
T ss_pred hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccc
Confidence 34799999999888776666666666655554433333111 111222222333333344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 228 ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVW 307 (1198)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (1198)
..+..-...+..+.....+...-++...|-.|+.|+.+.++..+..........+...+..-..........++.++...
T Consensus 230 Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~l 309 (604)
T COG4178 230 LIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPIL 309 (604)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH
Confidence 55555555566666667777788889999999999988777665544443322221111111111111112222233333
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCccCCCCcc--cCCC
Q 000984 308 YGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP-----EIDAYDTKGKI--LDDI 380 (1198)
Q Consensus 308 ~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~--~~~~ 380 (1198)
.+......|.++.|.+......+.....+++++...+..+..-.+...|+.++..... +..+.+..... ....
T Consensus 310 i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~ 389 (604)
T COG4178 310 IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA 389 (604)
T ss_pred hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc
Confidence 3444556788888888777666666666777877778888888888888877653221 11111100000 0111
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
+..|+++|++..-|+. ...++++||.+++||.+.|.|+||||||||+++|.|+.|--+|+|.... -.
T Consensus 390 ~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~ 456 (604)
T COG4178 390 DHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DS 456 (604)
T ss_pred cceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CC
Confidence 4679999999998753 4789999999999999999999999999999999999999999997762 13
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
.+-|+||.|.+-.||+||-|+++.+. .+++++.+++.+|+|.+.++++.+-. +-..-||+|||||+++||.++
T Consensus 457 ~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL 531 (604)
T COG4178 457 ALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLL 531 (604)
T ss_pred ceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHH
Confidence 69999999999999999999998765 78999999999999999998874322 234579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEe
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1198)
++|++++|||+|||||++++..+.+.+++.+.+.|+|-|.||.......++.+-++
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999999999999999999999998888777766554
No 149
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.2e-40 Score=362.43 Aligned_cols=218 Identities=32% Similarity=0.516 Sum_probs=183.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCeEEECCeecCCc--CHH
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--QLQ 456 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~~--~~~ 456 (1198)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998753 455
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
..|++++|+||++.+|..|++||+.++... .+.+ ++..+++..++.+++ .........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHH
Confidence 678899999999999999999999875321 1122 222233333222111 14456677899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 9999999999999999999987
Q ss_pred cCC
Q 000984 609 EDP 611 (1198)
Q Consensus 609 ~~~ 611 (1198)
.++
T Consensus 232 ~~~ 234 (247)
T TIGR00972 232 TNP 234 (247)
T ss_pred hCC
Confidence 653
No 150
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-40 Score=364.27 Aligned_cols=221 Identities=31% Similarity=0.471 Sum_probs=184.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999987 48999999998853 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|++|+|.+|..|++|||.++... .. ++++.++++.+++.+.+ .........+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHH
Confidence 5678899999999999999999999875321 11 12233344443332211 2233456778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999999
Q ss_pred hcCCCc
Q 000984 608 VEDPEG 613 (1198)
Q Consensus 608 ~~~~~~ 613 (1198)
.+++..
T Consensus 237 ~~~~~~ 242 (254)
T PRK14273 237 FFNPKN 242 (254)
T ss_pred HhCCCC
Confidence 765433
No 151
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-40 Score=367.65 Aligned_cols=212 Identities=31% Similarity=0.560 Sum_probs=182.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+...+++++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 24699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+| .++..|+++|+.|+... .+. +++..+++.+++.+ ........||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-----------FRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999998 67889999999976321 122 23344444444433 33444568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998875 4789999999999985 5999999999999999998764
No 152
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-40 Score=370.47 Aligned_cols=220 Identities=31% Similarity=0.555 Sum_probs=186.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHHH
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~ 457 (1198)
|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 24699999999999999999999999999999999999999999999999998653 3457
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHh
Q 000984 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~ 532 (1198)
+|++|+||+|+| .+|..|++|||.++... .+.++..+. +.+.++.+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 888999999998 68888999999986321 233332221 12334444 6764 456778899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||||+.+|+++||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998874 3789999999999875 599999999999999999998875
Q ss_pred C
Q 000984 610 D 610 (1198)
Q Consensus 610 ~ 610 (1198)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
No 153
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-40 Score=364.71 Aligned_cols=221 Identities=33% Similarity=0.539 Sum_probs=186.8
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--c
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--F 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~ 453 (1198)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 369999999999999999999999999999999999986 579999999999853 4
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
+...+|++++|++|+|.+|..|++||+.++... .+. ++++++++..++.+ ++....++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHH
Confidence 556788899999999999999999999875321 222 22333343333221 2234566778899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999998864 9999999999999999999
Q ss_pred hHhcCC
Q 000984 606 KLVEDP 611 (1198)
Q Consensus 606 ~l~~~~ 611 (1198)
++...+
T Consensus 241 ~~~~~~ 246 (260)
T PRK10744 241 TIFTKP 246 (260)
T ss_pred HHHhCC
Confidence 987653
No 154
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-40 Score=365.20 Aligned_cols=218 Identities=32% Similarity=0.518 Sum_probs=184.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 359999999999999999999999999999999999874 589999999999865 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|++|++.+|..|++||+.++... . . .+++..+++.+++.+.+ ....+....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 5678899999999999989999999875311 1 1 12334444444432221 2345667789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999998
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 765
No 155
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-40 Score=369.83 Aligned_cols=220 Identities=31% Similarity=0.552 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----cCHHH
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~ 457 (1198)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 1469999999999999999999999999999999999999999999999999863 34566
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHh
Q 000984 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~ 532 (1198)
.|++++||+|+| .+|+.|++|||.|+... .+.++..+. +.+.++.+ |++ .........||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 68889999999976321 223322211 11223333 443 2335667789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|++||+++.+. .||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999886 499999999999999999999875
Q ss_pred C
Q 000984 610 D 610 (1198)
Q Consensus 610 ~ 610 (1198)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
No 156
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-40 Score=366.86 Aligned_cols=216 Identities=31% Similarity=0.553 Sum_probs=185.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+| .+++.|++|||.++... .+. +++.++++..+ ++..+......||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG-----------MEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcC-----------ChhhhhCCcccCCHHHHHHHHHH
Confidence 9999998 46678999999875321 122 22333444444 33344455568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 6899999999999888999999999999999999988654
No 157
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.6e-40 Score=357.32 Aligned_cols=217 Identities=26% Similarity=0.471 Sum_probs=180.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 369999999999999999999999999999999999999999999999999988776554 6789
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+|++|++.+|.+ |++||+.++.......+.... +.+.++.++ +++.........||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998875 999999876432211111111 111222221 2334455667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 47899999999998765 99999999999999999887653
No 158
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-40 Score=360.04 Aligned_cols=216 Identities=34% Similarity=0.541 Sum_probs=181.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999963 469999999999999999999999999999999999999999999999999876543 25689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|++|+|.+|. .|++||+.++.... +..+..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA-----KVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999999885 69999998763211 1111111 112333433 4555556667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999999999988753 6899999999998765 999999999999999999998754
No 159
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-40 Score=364.26 Aligned_cols=220 Identities=33% Similarity=0.513 Sum_probs=185.7
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--c
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~ 453 (1198)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C--C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
+...+|++++|++|+|.+|..|++||+.++... . . .+++.++++..++.+.+ ....+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 456778899999999999988999999875310 0 1 12233344444332211 2345667789999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999865 899999999999999999
Q ss_pred hhHhcC
Q 000984 605 SKLVED 610 (1198)
Q Consensus 605 ~~l~~~ 610 (1198)
+++..+
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998754
No 160
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-40 Score=360.20 Aligned_cols=218 Identities=34% Similarity=0.573 Sum_probs=184.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+.. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999641 46999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--hhcCCCCCCChHHHHHHhHHHhhc
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT--LVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|++|+|.+|. .|++||+.++... .+.++.. ..+.+.++.+ |+.. ...+...+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999885 7999999865211 1111111 1122334444 4443 456677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999988753 789999999999875 4999999999999999999988654
No 161
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=9.5e-40 Score=374.84 Aligned_cols=221 Identities=32% Similarity=0.536 Sum_probs=184.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 459999999999999999999999999999999999999999999999999987654 35689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++.........||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 6999999987431 12222111 111223333 4444455667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988764 6899999999998765 99999999999999999999987654
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 230 ~~~ 232 (353)
T PRK10851 230 TRF 232 (353)
T ss_pred chH
Confidence 333
No 162
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.5e-40 Score=376.44 Aligned_cols=223 Identities=30% Similarity=0.494 Sum_probs=187.1
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC--CeEEECCeecCCcCHHHH
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~--G~i~i~g~~~~~~~~~~~ 458 (1198)
.+.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.++|.++.+.+..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~-- 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--
Confidence 367999999999963 359999999999999999999999999999999999999999 9999999999876653
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+++|+||+|++.+|. .||+|||.|+... .+.++..+. +.+.++.+ |++........+||||||||++|||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER-----VADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 568999999999995 5999999986421 122222211 12223333 5555566677799999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC---CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999987654 6899999999998754 9999999999999999999998775
Q ss_pred Cchh
Q 000984 612 EGAY 615 (1198)
Q Consensus 612 ~~~~ 615 (1198)
...|
T Consensus 231 ~~~~ 234 (362)
T TIGR03258 231 ADGF 234 (362)
T ss_pred CcHH
Confidence 4333
No 163
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-40 Score=360.53 Aligned_cols=215 Identities=33% Similarity=0.572 Sum_probs=181.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r~ 460 (1198)
++++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 146999999999999999999999999999999999999999999999999998776 456788
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
.++|+||++.+|. .|++||+.++.... .++.. ..+.+.++.+ |+.......+.+||||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK------QRALAALERV--GLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHH------HHHHHHHHHc--CChhhhCCCcccCCHHHH
Confidence 9999999998886 79999998753210 11111 1112233333 555556677889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++++|++|||||||++||+.+.+.+.+.++++. .++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 99999999999999999999999999999999999998875 3789999999999987 59999999999999999998
Q ss_pred hHh
Q 000984 606 KLV 608 (1198)
Q Consensus 606 ~l~ 608 (1198)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 863
No 164
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.8e-40 Score=356.76 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=170.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1198)
|+++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 24699999999999999999999999999999999999999999999999998766543 4678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|++|+|.+|. .|++||+.++... .. ++++.++++..+ +.........+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-----------LEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 9999999999886 6999999875211 11 223344444443 3333444556899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
|||++++|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 37899999999999875 999999999975
No 165
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.6e-39 Score=358.06 Aligned_cols=212 Identities=29% Similarity=0.492 Sum_probs=190.1
Q ss_pred CcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh
Q 000984 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 380 ~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
..+.|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34569999999952 3599999999999999999999999999999999999999999999998
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+++|++|++++|..|++||+.++.. ....++...++.+++.+.+..+|.+.++.+++.+..||||||||++||||+++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 5999999999999999999997643 23445566677778888899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHH-HHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++|||||||++||+.+...+.+. ++.+.+++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999998888765 4555567999999999999988999999999999999999998754
No 166
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-39 Score=349.96 Aligned_cols=200 Identities=34% Similarity=0.553 Sum_probs=180.1
Q ss_pred EEEEeEEEEcCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|+++||+++|+...+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999964311 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+|++|+|.+|++|++||+.++.. ..+++.+++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 4456677888888889999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHH-HHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 542 RILLLDEATSALDAESEKVVQE-ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~-~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
+++||||||++||+++.+.+.+ .++... +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999887766 455553 4689999999999998899999999985
No 167
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.5e-40 Score=376.31 Aligned_cols=217 Identities=32% Similarity=0.551 Sum_probs=185.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.+.. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .||+|||.|+... .+. +++.++++..+ ++........+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-----------LEEFAQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999995 5999999987431 122 23333444444 444445555789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988764 789999999999865 599999999999999999999988755
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 433
No 168
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-40 Score=358.29 Aligned_cols=220 Identities=33% Similarity=0.543 Sum_probs=183.4
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1198)
|+++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999998876543 347
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++++|+||+|.+|. .|++||+.++... .+..+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 88999999999996 6999999874321 1111111 1122334444 55555666678899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999887653
No 169
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-40 Score=368.59 Aligned_cols=220 Identities=29% Similarity=0.493 Sum_probs=182.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC---------
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------- 452 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--------- 452 (1198)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1369999999999999999999999999999999999999999999999877632
Q ss_pred ---------------cCHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 000984 453 ---------------FQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID 513 (1198)
Q Consensus 453 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~ 513 (1198)
.+...+|++|+||+|+| .+|..||+|||.|+... .+.++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456788999999987 68889999999986422 223222221 11223333 553
Q ss_pred -chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEE
Q 000984 514 -TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMI 590 (1198)
Q Consensus 514 -t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i 590 (1198)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34567778999999999999999999999999999999999999999999998875 4789999999999875 59999
Q ss_pred EEEeCCEEEEecChhhHhcC
Q 000984 591 AVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++|++|++++.|+++++.++
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998764
No 170
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-40 Score=366.03 Aligned_cols=217 Identities=33% Similarity=0.533 Sum_probs=179.4
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----hc
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RK 460 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~ 460 (1198)
.++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 458999999999999999999999999999999999999999999999999987765443 36
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|++|++.+| ..|++||+.++... ... +++.+.++.. |++..+.....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-----------GLEGWEHKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCCcccCCHHHHHHHHH
Confidence 799999999988 57999999874211 111 2233333333 34444455556899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 6899999999998754 999999999999999999999765
Q ss_pred CCchh
Q 000984 611 PEGAY 615 (1198)
Q Consensus 611 ~~~~~ 615 (1198)
+...|
T Consensus 252 ~~~~~ 256 (269)
T cd03294 252 PANDY 256 (269)
T ss_pred cCcHH
Confidence 44333
No 171
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7e-40 Score=355.90 Aligned_cols=215 Identities=23% Similarity=0.471 Sum_probs=178.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999987543 56678899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|+|.++ ..|+++|+.++.. ....++..+ .+.+.++.+ |+.........+||||||||++||||++++
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999988 6799999986421 112211111 111223222 333334455578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988777999999999999865 999999999999999998775
No 172
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.3e-39 Score=359.58 Aligned_cols=214 Identities=31% Similarity=0.546 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1198)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999877653 34678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
+++|++|++.+|. .|++||+.++.... ..+. ...+.+.++.+ |++........+||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED------KERALSALERV--GLADKAYQRADQLSGGQQ 151 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHH------HHHHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 8999999998885 69999998753211 1111 11122333443 555556677789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999988753 689999999999985 49999999999999999998
Q ss_pred hH
Q 000984 606 KL 607 (1198)
Q Consensus 606 ~l 607 (1198)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 86
No 173
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-39 Score=376.59 Aligned_cols=214 Identities=25% Similarity=0.463 Sum_probs=186.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
+||+|++.+ ++.|++||+.++...+ . .++++++++..++ .........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl-----------~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGV-----------AQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHH
Confidence 999999987 5789999999864211 1 2234444444444 3333455678999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .|||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 4789999999999985 599999999999999999999876
Q ss_pred C
Q 000984 610 D 610 (1198)
Q Consensus 610 ~ 610 (1198)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 174
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=365.85 Aligned_cols=219 Identities=26% Similarity=0.525 Sum_probs=184.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1198)
.|+++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 344567889
Q ss_pred ceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+++|++|+| .++..|++||+.++... .+.++.++. +.+.++.+ |+.........+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999875321 222222111 11222332 45555567788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988764 789999999999987 5999999999999999999998764
No 175
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=361.48 Aligned_cols=220 Identities=35% Similarity=0.508 Sum_probs=184.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1198)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 459999999999999999999999999999999999987 589999999999863 45
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
..++|++++|++|+|.+|..|++||+.++... .. ++++.++++..++. .+++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW-------DECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc-------chhhhhhCCCcccCCHHHHH
Confidence 66788899999999999988999999976421 11 12233333333221 23344556677889999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeC-----------CE
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-----------GK 597 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-----------G~ 597 (1198)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988777899999999998865 999999996 67
Q ss_pred EEEecChhhHhcCC
Q 000984 598 IVEKGTHSKLVEDP 611 (1198)
Q Consensus 598 i~~~g~~~~l~~~~ 611 (1198)
+++.|+++++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999987653
No 176
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=361.21 Aligned_cols=218 Identities=30% Similarity=0.475 Sum_probs=182.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecC--CcCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK--EFQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~--~~~~ 455 (1198)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.++|.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 4599999999999999999999999999999999999987 4999999999987 4555
Q ss_pred HHHhcceEEEcCCCCCCcc-cHHHHHhcCCC--C--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKD--D--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
..+|++++|++|+|.+|.. |++||+.++.. . ...+ ++.++++..++.+ .+.........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence 6778899999999999965 99999987421 1 0122 2233333322211 1123456677899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999998765 9999999999999999999
Q ss_pred hHhcC
Q 000984 606 KLVED 610 (1198)
Q Consensus 606 ~l~~~ 610 (1198)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98764
No 177
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=360.12 Aligned_cols=219 Identities=31% Similarity=0.469 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 469999999999999999999999999999999999987 3 58999999999863 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|++|+|.+|..|++||+.++.... .+++ +.++++..++.+. +.........+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE-------VKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHH
Confidence 67788999999999999899999998753211 1222 2222323222211 12345667789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+++
T Consensus 242 ~~~~ 245 (259)
T PRK14274 242 FSNP 245 (259)
T ss_pred hhCC
Confidence 7653
No 178
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.6e-39 Score=356.23 Aligned_cols=216 Identities=25% Similarity=0.472 Sum_probs=183.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... |..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 469999999999999999999999999999999999999999999999999887766553 5679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|++.+|.+ |++||+.++.+.. ..++... .+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999876 9999998753211 1221111 123344444 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999988754 7899999999987765 99999999999999999988754
No 179
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.8e-39 Score=356.14 Aligned_cols=216 Identities=29% Similarity=0.523 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999988766544 45899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++ ..|+++|+.++... ....+..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999874 68999999864321 12221111 122344444 666667777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 37899999999999888999999999999999999888654
No 180
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=376.24 Aligned_cols=219 Identities=29% Similarity=0.486 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++++
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999876653 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||||++
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 5999999986421 12222111 111223333 45445556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+..
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999988753 7899999999998764 999999999999999999999876443
No 181
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=357.98 Aligned_cols=219 Identities=32% Similarity=0.495 Sum_probs=184.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~~ 457 (1198)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 4599999999999999999999999999999999999974 6999999999998888788
Q ss_pred HhcceEEEcCCCCCC-cccHHHHHhcCCCCC----CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 458 IRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA----TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~----~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
+|++++|++|+|.++ ..|++||+.++.... .. +++.++++..++.+. ++........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE-------VKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCCcccCCHHHH
Confidence 889999999999755 689999998753211 11 223333333332211 12334566678999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 5999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14247 233 FTNP 236 (250)
T ss_pred HcCC
Confidence 7653
No 182
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=330.05 Aligned_cols=220 Identities=26% Similarity=0.439 Sum_probs=191.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1198)
.++++|++..|.. ..+|+++||++++||+++++||||+|||||+++|+|+.++.+|+|.++|.|+...+++.. |..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999964 469999999999999999999999999999999999999999999999999999988775 678
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|+||||...+| +-||.||+.+|.....+++... ..+++..+-+| -+......++.+|||||+|.+||||||..+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999999999 5799999998743222211111 11333455566 467778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +-||++|.++..... -+||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 459999999999865 5999999999999999999999876
No 183
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-39 Score=361.74 Aligned_cols=220 Identities=30% Similarity=0.595 Sum_probs=186.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 35699999999999999999999999999999999999999999999999999877777889999
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|+| .++..|++||+.++... .+.++... .+.+.++.+ |++........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45578999999875321 22232221 112233333 4555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 4899999999998888999999999999999999888654
No 184
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.6e-39 Score=367.30 Aligned_cols=228 Identities=28% Similarity=0.435 Sum_probs=188.0
Q ss_pred cEEEEeEEEEcCCCC----------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC
Q 000984 383 DIELRDVYFSYPARP----------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1198)
.++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996421 2468999999999999999999999999999999999999999999999999988
Q ss_pred cCHH---HHhcceEEEcCCC--CCC-cccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCC
Q 000984 453 FQLQ---WIRKKIGLVSQEP--VLF-TGSIKDNIAYGK----DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT 521 (1198)
Q Consensus 453 ~~~~---~~r~~i~~v~Q~~--~l~-~~ti~~Ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~ 521 (1198)
.+.. .+|++|+||+|+| .++ ..||.+||.++. +..+.++..+.. .+.++.+ |++ ........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 8754 3578899999999 466 579999997531 112333322211 1222222 332 23466678
Q ss_pred CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+||||||||++|||||+.+|++||+||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988754 7899999999999976 999999999999
Q ss_pred EEecChhhHhcCCCchhHH
Q 000984 599 VEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~ 617 (1198)
+|.|+++++.+++...|.+
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999998776556655
No 185
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-39 Score=354.33 Aligned_cols=214 Identities=26% Similarity=0.456 Sum_probs=178.5
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---H
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~ 458 (1198)
.++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 459 R-KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 459 r-~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
| +.++|++|+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 67999999999886 499999987421 112222111 112233333 555556667789999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 4789999999999998889999999999998775
No 186
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-39 Score=359.40 Aligned_cols=220 Identities=33% Similarity=0.512 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999998854 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|+.++|++|++.+|..|++||+.++.... .. +++..+++..++.+ ...........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 56788999999999999999999998753211 11 12222333322211 111234566789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999765 999999999999999999998
Q ss_pred hcCCC
Q 000984 608 VEDPE 612 (1198)
Q Consensus 608 ~~~~~ 612 (1198)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14251 234 FIAPK 238 (251)
T ss_pred HhCCC
Confidence 76543
No 187
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-39 Score=362.41 Aligned_cols=217 Identities=32% Similarity=0.520 Sum_probs=186.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999887777888999
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+|. ++..|+.|||.++.. ....++ +..+++.++ +..........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVN-----------MLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 668899999987532 123332 233333333 33334455678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||+++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988754 7899999999999988999999999999999999998764
No 188
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.7e-39 Score=352.37 Aligned_cols=211 Identities=27% Similarity=0.524 Sum_probs=175.7
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
|+++|++++|+.... .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|+|.+|. .|++||+.+.... .+.++... .+.+.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 99999999987 4999999764211 12222111 112233443 55555667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998875 47899999999998765 9999999999998754
No 189
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-39 Score=362.13 Aligned_cols=217 Identities=31% Similarity=0.556 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---CeEEECCeecCCcCHHHH
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~---G~i~i~g~~~~~~~~~~~ 458 (1198)
+.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999643 2469999999999999999999999999999999999999987 899999999987777778
Q ss_pred hcceEEEcCCCC--CCcccHHHHHhcCCCC--CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
+++++|++|+|. ++..|++|||.++... .+.++ +..+++.+ |++........+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV-----------GMLDYIDSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHH
Confidence 889999999994 6688999999875322 22322 33333333 44444556667999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 68999999999999889999999999999999999886
Q ss_pred cC
Q 000984 609 ED 610 (1198)
Q Consensus 609 ~~ 610 (1198)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 54
No 190
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-39 Score=351.86 Aligned_cols=207 Identities=36% Similarity=0.607 Sum_probs=172.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|+||+|.++. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+++
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 6999999875321 11211111 112233333 555555666678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999988753 7899999999998765 9999999999998765
No 191
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=360.44 Aligned_cols=220 Identities=33% Similarity=0.501 Sum_probs=185.8
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--c
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~ 453 (1198)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 446999999999963 4699999999999999999999999999999999999874 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
+...+|++++|++|++.+|..|++||+.++.... .. +++.++++..++.+. ..+..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE-------VKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChh-------HHHHhhCCcccCCHH
Confidence 4567788999999999999899999998753211 11 223333333333222 224567778899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988778999999999998764 9999999999999999999
Q ss_pred hHhcC
Q 000984 606 KLVED 610 (1198)
Q Consensus 606 ~l~~~ 610 (1198)
++.++
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98764
No 192
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.9e-39 Score=367.16 Aligned_cols=217 Identities=24% Similarity=0.459 Sum_probs=180.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999987654 4578899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
||+||+|.++. .|++||+.+.... .+..+..+.. .+.++.+ |+.........+||||||||++|||||++
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV-----PPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 99999999885 7999999853221 1222222111 1222222 33333344445899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999988754 7899999999999865 999999999999999999998654
No 193
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=360.32 Aligned_cols=218 Identities=30% Similarity=0.471 Sum_probs=182.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999963 469999999999999999999999999999999999864 689999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++++++|++|+|.+|.+|++||+.++.... .. +.+.++++..++. .++....+....+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 56788999999999999999999998753211 11 1222233222221 1122345677789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999876 4999999999999999999998
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 765
No 194
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.9e-39 Score=339.54 Aligned_cols=178 Identities=34% Similarity=0.670 Sum_probs=165.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999643 24699999999999999999999999999999999999999999999999988766 567788999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|++|+.|++||+ ...||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998887789999999999999889999999999998764
No 195
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=356.83 Aligned_cols=219 Identities=34% Similarity=0.528 Sum_probs=183.6
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~ 454 (1198)
|.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 3699999999999999999999999999999999998763 68999999999874 35
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...+|++++|++|+|.+|..|+++|+.++... ... +++.++++..++.+ ++.........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 56678899999999999999999999875311 111 22233333333221 22234566778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778899999999998765 99999999999999999998
Q ss_pred HhcC
Q 000984 607 LVED 610 (1198)
Q Consensus 607 l~~~ 610 (1198)
+..+
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8754
No 196
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=358.83 Aligned_cols=219 Identities=30% Similarity=0.471 Sum_probs=185.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1198)
..|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999953 469999999999999999999999999999999999996 579999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...+|+.++|++|++.+|..|++||+.++... ... +++.++++..++.+ +.+...+.....|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHHH
Confidence 56678899999999999999999999875321 111 22333333333322 22345667788999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998854 99999999999999999999
Q ss_pred HhcC
Q 000984 607 LVED 610 (1198)
Q Consensus 607 l~~~ 610 (1198)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 8764
No 197
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.9e-39 Score=360.77 Aligned_cols=219 Identities=28% Similarity=0.472 Sum_probs=182.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998776543 357
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
++++|++|++.+|.+ |++||+.++... .+.++... .+.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999975 999999864211 12211111 111223333 4444455566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCC
Confidence 99999999999999999999999999999988753 6899999999998865 9999999999999999999987653
No 198
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-39 Score=353.47 Aligned_cols=208 Identities=36% Similarity=0.533 Sum_probs=173.4
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH----H
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW----I 458 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~----~ 458 (1198)
|+++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 146999999999999999999999999999999999999999999999999988776432 4
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+++++|++|+|.+|.+ |++||+.++.... ...+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5789999999998875 9999998753211 111111 1122344444 5666666777899999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
|++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998764 7899999999998888999999999974
No 199
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=358.44 Aligned_cols=219 Identities=32% Similarity=0.497 Sum_probs=183.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4599999999999999999999999999999999999975 799999999998653 24
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
..+|+.++|++|++.+|..|++||+.++... .+.++ +.++++.+++.+ ............|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 4567889999999999999999999875311 12222 223333332211 1123445667789999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
|++|||||+.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999998865 9999999999999999999987
Q ss_pred cCC
Q 000984 609 EDP 611 (1198)
Q Consensus 609 ~~~ 611 (1198)
+++
T Consensus 242 ~~~ 244 (258)
T PRK14268 242 HNP 244 (258)
T ss_pred cCC
Confidence 653
No 200
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-39 Score=349.46 Aligned_cols=199 Identities=29% Similarity=0.515 Sum_probs=168.4
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 469999999999999999999999999999999999999999999999998754 456778999
Q ss_pred EcCCC--CCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 465 VSQEP--VLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 465 v~Q~~--~l~~~ti~~Ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|+| .++..|++||+.++..... .+++.++++..++.+ ........||||||||++||||++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-----------LKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-----------hcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4678899999987643222 234455555554433 33444568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999998874 57899999999999875 9999999999975
No 201
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-39 Score=353.68 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=181.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998877654 5778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|++|++.+|. .|+++|+.++....+.++....+ .+.+..++ +++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999997 59999998754222222222111 11222221 122223446678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998865 4799999999999765 599999999999999999999864
No 202
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-39 Score=372.94 Aligned_cols=222 Identities=32% Similarity=0.536 Sum_probs=185.4
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+. .+++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 469999999999999999999999999999999999999999999999999987664 4678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++||+|++.+|. .||+|||.|+... .+..+..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999996 5999999986431 12222211 111223333 4545556666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
++|++||||||||+||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++...|
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 99999999999999999999999888877643 689999999999865 599999999999999999999988755443
No 203
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-39 Score=355.45 Aligned_cols=218 Identities=30% Similarity=0.501 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999987 69999999998643 45
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|+.++|++|+|.+|..|++||+.++... . ..+ .+.++++..++.+ ++.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHH
Confidence 5778899999999999999999999875321 1 111 1222222222222 233446777889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667999999999999876 899999999999999999998
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 764
No 204
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-39 Score=359.82 Aligned_cols=218 Identities=33% Similarity=0.588 Sum_probs=184.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC-HHHHhcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~~i 462 (1198)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 245999999999999999999999999999999999999999999999999998765 45678899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|+|. ++..|++|||.++... .+.++..+. +.+.++.+ |++.........||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5678999999875321 122222111 11223333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998865 47899999999999988999999999999999999988654
No 205
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=357.80 Aligned_cols=219 Identities=35% Similarity=0.520 Sum_probs=182.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc---CCC--CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDP--QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~---~~~--~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|.|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999963 4699999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|+||+|.+|..|++||+.++... . .. ++++++++.+++. +.+.+.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW-------DEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCC-------cchhhhhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 1 11 1223333333221 1223445677889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998854 999999999999999999999
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+++
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 7653
No 206
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-39 Score=349.12 Aligned_cols=203 Identities=27% Similarity=0.508 Sum_probs=172.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ .++|+|+||++++| +++|+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999963 36999999999999 99999999999999999999999999999999999988766 67788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|+|.+|.+ |++||+.+... ..+ .+++.++++..++.+ .......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-----------RAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 99999999875 99999986321 111 123334444444332 2334556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988777999999999999864 9999999999998765
No 207
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-39 Score=363.64 Aligned_cols=223 Identities=28% Similarity=0.495 Sum_probs=182.6
Q ss_pred cccEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----c-
Q 000984 381 RGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----F- 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~- 453 (1198)
.+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35699999999996432 1359999999999999999999999999999999999999999999999998752 2
Q ss_pred CHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 000984 454 QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqk 528 (1198)
+...+|++++|++|+| .+|..|++||+.++... ...++..+.+ .+.++.+ |+. .........||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3566788999999998 46788999999875321 2222222111 1222222 332 234566788999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988753 789999999999875 49999999999999999998
Q ss_pred hHhcC
Q 000984 606 KLVED 610 (1198)
Q Consensus 606 ~l~~~ 610 (1198)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 88654
No 208
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=356.87 Aligned_cols=219 Identities=29% Similarity=0.462 Sum_probs=182.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CC---CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DP---QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~---~~G~i~i~g~~~~~~--~~ 455 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ .| ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 46999999999999999999999999999999999985 36 489999999998643 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|+.++|+||+|.+|+.|++||+.++.. .... +++..+++.+++.+ ++.+..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 567889999999999999999999986521 1111 12222333332221 223445677789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998764 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 7653
No 209
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=358.88 Aligned_cols=220 Identities=27% Similarity=0.490 Sum_probs=184.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|+|. ++..|+++|+.++... ...++..+. +.+.++.+ |+.........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 4467899999876322 122222111 11122222 3333445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 6899999999998888999999999999999999988654
No 210
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-39 Score=361.47 Aligned_cols=217 Identities=26% Similarity=0.488 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCC---CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC-HHHH
Q 000984 383 DIELRDVYFSYPARP---NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~ 458 (1198)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987653 3567
Q ss_pred hcceEEEcCCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
|++++|++|+|. ++..|+.+|+.|+... .+. +++.++++.+ |+.........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV-----------GMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHH
Confidence 889999999984 6777999999886321 122 2233344444 44444455567899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++||||++++|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999998889999999999999999999987
Q ss_pred cC
Q 000984 609 ED 610 (1198)
Q Consensus 609 ~~ 610 (1198)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 211
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.7e-39 Score=352.29 Aligned_cols=217 Identities=31% Similarity=0.551 Sum_probs=183.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc--CHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF--QLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~--~~~~~r~~ 461 (1198)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|++.++. .|+++|+.++.. ..+..+..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998885 699999987531 112222111 122334444 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+++|+++||||||++||+++...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 47899999999999865 999999999999999999988754
No 212
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.9e-39 Score=356.35 Aligned_cols=219 Identities=32% Similarity=0.541 Sum_probs=183.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---------
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--------- 454 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--------- 454 (1198)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999999999999999999987543
Q ss_pred ----HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 455 ----LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 455 ----~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
...+|++++|++|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++.........||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2456889999999999884 799999987421 112221111 122344444 5555666777899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++++|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999985 599999999999999999
Q ss_pred hhhHhcCCC
Q 000984 604 HSKLVEDPE 612 (1198)
Q Consensus 604 ~~~l~~~~~ 612 (1198)
++++.+.+.
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876543
No 213
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-39 Score=359.04 Aligned_cols=213 Identities=28% Similarity=0.472 Sum_probs=182.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-------C---CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD-------A---TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~-------~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
+|++|++.++. .|++||+.++... . .++++..+++.+++.+ .......+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-----------LAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccCCHHHHHHH
Confidence 99999987665 5999999875311 0 1223444444444433 33444568999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 689999999999986 59999999999999999998875
Q ss_pred c
Q 000984 609 E 609 (1198)
Q Consensus 609 ~ 609 (1198)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
No 214
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.5e-39 Score=350.70 Aligned_cols=209 Identities=29% Similarity=0.523 Sum_probs=173.8
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246999999999999999999999999999999999999999999999999998876544 33
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
++++|++|+|.+|. .|++||+.++.. .....+..+ .+.+.++.+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999885 699999986421 112111111 112333443 5655566677889999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEE
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1198)
|++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988753 68999999999999889999999999985
No 215
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.9e-39 Score=352.44 Aligned_cols=214 Identities=26% Similarity=0.494 Sum_probs=179.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 462 (1198)
|+++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999963 46999999999999999999999999999999999999999999999999998876654 46789
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+|++|++.+|.. |+++|+.++........ .+. ..+.++.+ ++++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999875 99999987543221110 000 01112111 12334456667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999988764 6899999999999885 999999999999999999887
No 216
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-39 Score=357.95 Aligned_cols=219 Identities=27% Similarity=0.475 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHH-----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEE-----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~-----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++++++|++|+|.+|..|++||+.++.. ...+++ +.++++..++ .+++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAI-------WDELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------cchHHHHHhcCcccCCHHHH
Confidence 667889999999999998999999986531 111111 1112222111 12344456677889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
..++
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 7653
No 217
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5e-39 Score=358.33 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=182.1
Q ss_pred EEEEeEEEEcCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH
Q 000984 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
|+++|++++|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1357999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHH
Q 000984 458 ---IRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQ 527 (1198)
Q Consensus 458 ---~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGq 527 (1198)
+|++++|++|+|. ++ ..|++||+.++.. ....++.. ..+.+.++.+ |++ .........|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 44 4799999975321 11111111 1122334444 554 34566778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||++||||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 7899999999999874 999999999999999999
Q ss_pred hhHhcC
Q 000984 605 SKLVED 610 (1198)
Q Consensus 605 ~~l~~~ 610 (1198)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
No 218
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-38 Score=353.52 Aligned_cols=219 Identities=33% Similarity=0.565 Sum_probs=183.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC--------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-------- 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-------- 454 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3889999999963 35999999999999999999999999999999999999999999999999986542
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
...+|++++|++|+|.+|. .|++||+.++. .....++..+. +.+.++.+ |++........+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3456789999999999885 79999998642 11122211111 12334444 55555667778999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988754 7899999999999865 9999999999999999999987
Q ss_pred cCC
Q 000984 609 EDP 611 (1198)
Q Consensus 609 ~~~ 611 (1198)
+.+
T Consensus 233 ~~~ 235 (250)
T PRK11264 233 ADP 235 (250)
T ss_pred cCC
Confidence 643
No 219
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-39 Score=355.23 Aligned_cols=221 Identities=29% Similarity=0.478 Sum_probs=183.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCeEEECCeecCCc--C
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKEF--Q 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~~--~ 454 (1198)
+.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 469999999999999999999999999999999999986 3 589999999998643 4
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
...+|++++|++|++.+|. .|++||+.++... .+. +++.++++..++.+.+ ....+....+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence 5567889999999999887 6999999864211 111 2223333333332211 22345667889999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877889999999999986 49999999999999999999
Q ss_pred hHhcCCC
Q 000984 606 KLVEDPE 612 (1198)
Q Consensus 606 ~l~~~~~ 612 (1198)
++...+.
T Consensus 233 ~~~~~~~ 239 (252)
T PRK14256 233 KIFTTPE 239 (252)
T ss_pred HHHhCCC
Confidence 9876543
No 220
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-39 Score=357.90 Aligned_cols=219 Identities=32% Similarity=0.530 Sum_probs=181.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCCcC--HH
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQ--LQ 456 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~~--~~ 456 (1198)
-+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 368999999963 469999999999999999999999999999999999986 46999999999886543 34
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
.+|++++|++|++.+|.+|++||+.++.. .. .. +++.++++..++.++ +.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 57889999999999999999999987521 11 11 122233333322111 12345667789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred hcCCC
Q 000984 608 VEDPE 612 (1198)
Q Consensus 608 ~~~~~ 612 (1198)
.+.+.
T Consensus 236 ~~~~~ 240 (251)
T PRK14244 236 FKNPQ 240 (251)
T ss_pred hcCCC
Confidence 76543
No 221
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-39 Score=355.42 Aligned_cols=219 Identities=28% Similarity=0.484 Sum_probs=184.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999998763 489999999998765 45
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
...|+.++|++|+|.+|..|++||+.++.... .. +++.++++..++ .+++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL-------WDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcC-------chhhHHHhhcChhhCCHHHH
Confidence 66788999999999999999999999753211 11 122222222222 22334556778889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999864 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
..++
T Consensus 236 ~~~~ 239 (253)
T PRK14261 236 FENP 239 (253)
T ss_pred HhCC
Confidence 7653
No 222
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-39 Score=355.60 Aligned_cols=219 Identities=32% Similarity=0.465 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecC--CcCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLK--EFQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~--~~~~ 455 (1198)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 369999999999999999999999999999999999976 37999999999885 3455
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
..+|++++|++|+|.+|..|+++|+.++.... . ++++.++++.+++.+++ +......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 67788999999999999889999998753211 1 12333344444443332 223466778999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe---------CCEEEE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH---------RGKIVE 600 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~ 600 (1198)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998765 99999998 899999
Q ss_pred ecChhhHhcCC
Q 000984 601 KGTHSKLVEDP 611 (1198)
Q Consensus 601 ~g~~~~l~~~~ 611 (1198)
.|+++++.+.+
T Consensus 240 ~~~~~~~~~~~ 250 (264)
T PRK14243 240 FDRTEKIFNSP 250 (264)
T ss_pred eCCHHHHHhCC
Confidence 99999997653
No 223
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-39 Score=361.27 Aligned_cols=221 Identities=29% Similarity=0.546 Sum_probs=183.2
Q ss_pred cEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHH
Q 000984 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~ 456 (1198)
.|+++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 000984 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri 531 (1198)
..++.++|++|+| .+|..|++|||.++.. ..+.++..+. +.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6678999999998 5778899999987532 1222222111 12333443 564 345667789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+|||||+.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 4789999999999886 599999999999999999998865
Q ss_pred C
Q 000984 610 D 610 (1198)
Q Consensus 610 ~ 610 (1198)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
No 224
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-39 Score=355.56 Aligned_cols=219 Identities=33% Similarity=0.519 Sum_probs=183.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 4699999999999999999999999999999999999874 899999999988653 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++++++|++|+|.+|..|++||+.++... ...+ ++.++++..++.+. ++........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE-------VKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch-------hHHHHhCChhhcCHHHH
Confidence 5667899999999999999999999875211 1111 22333333332221 12345677789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 4999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14262 233 VERP 236 (250)
T ss_pred HhCC
Confidence 7653
No 225
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.1e-39 Score=356.47 Aligned_cols=220 Identities=31% Similarity=0.544 Sum_probs=183.3
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-------
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------- 453 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~------- 453 (1198)
++.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred ------CHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCC
Q 000984 454 ------QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQ 522 (1198)
Q Consensus 454 ------~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g~~ 522 (1198)
....+|++++|+||++.++. .|++||+.++.. .....+..+ .+.+.++.+ |+.... ......
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~ 152 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVH 152 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCccc
Confidence 13466789999999999996 599999986321 111211111 112333343 555443 566789
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999988754 7999999999999886 99999999999999
Q ss_pred ecChhhHhcC
Q 000984 601 KGTHSKLVED 610 (1198)
Q Consensus 601 ~g~~~~l~~~ 610 (1198)
.|+++++.+.
T Consensus 233 ~~~~~~~~~~ 242 (257)
T PRK10619 233 EGAPEQLFGN 242 (257)
T ss_pred eCCHHHhhhC
Confidence 9999998754
No 226
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=371.48 Aligned_cols=205 Identities=34% Similarity=0.547 Sum_probs=173.5
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----hcceEEEcCCCCCCc-c
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT-G 474 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~-~ 474 (1198)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+ |++++|++|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988876554 358999999999986 6
Q ss_pred cHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeC
Q 000984 475 SIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1198)
Q Consensus 475 ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1198)
|++||+.++... .+. +++.++++.+ |++........+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~-----------gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQV-----------GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999975321 122 2223333333 44444555667899999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 549 ATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
||++||+.+.+.+++.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+++++..++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998874 3789999999999876 499999999999999999999987644333
No 227
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.8e-39 Score=353.34 Aligned_cols=221 Identities=25% Similarity=0.455 Sum_probs=185.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... |..+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 469999999999999999999999999999999999999999999999999887766543 4679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDDATT--EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+|++|++.+|.+ |++||+.++...... .. .........+.+.++.+ |++.........||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999976 999999875321000 00 00001111223444444 56666677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988778999999999999875 99999999999999999988864
No 228
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-39 Score=361.19 Aligned_cols=220 Identities=33% Similarity=0.576 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHHH
Q 000984 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~ 457 (1198)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 13699999999999999999999999999999999999999999999999998753 3466
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHh
Q 000984 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~ 532 (1198)
+|++|+|++|+| .+|..|++||+.++... .+.++..+. +.+.++.+ |++ .........||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 67889999999875321 223322221 12223333 454 2346667889999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999988754 7899999999998865 999999999999999999988653
No 229
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.1e-39 Score=346.51 Aligned_cols=203 Identities=26% Similarity=0.459 Sum_probs=173.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999953 4699999999999999999999999999999999999999999999999988754 45678899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++ +.|++||+.++.. ..+++++.++++..++.+ ........||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-----------SAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 5799999987532 123445555555554433 33445668999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998865 47899999999998865 9999999999998765
No 230
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-39 Score=354.61 Aligned_cols=219 Identities=32% Similarity=0.488 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 4699999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|+||++.+|..|++||+.++.... +. +++.++++.+++.+ ++..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 56788999999999999999999998753211 11 22333344333322 222345567789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998865 999999999999999999998
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14270 234 FLEP 237 (251)
T ss_pred hcCC
Confidence 7653
No 231
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-39 Score=349.54 Aligned_cols=209 Identities=25% Similarity=0.431 Sum_probs=175.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|++.++. .|+++|+.++... .+. +++.+.++.. |++.........||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV-----------GLLEAADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHH
Confidence 9999998886 5999999864211 111 2233333333 33333444556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
++.+|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 6899999999998865 999999999999999988764
No 232
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-39 Score=358.50 Aligned_cols=215 Identities=31% Similarity=0.530 Sum_probs=183.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999999999877777888899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 463 GLVSQEPV--LFTGSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~Ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++|+|. +|..|++||+.++.. ..+.+ ++.++++.. |+..........||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML-----------GLEELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHHHH
Confidence 99999983 778899999986432 12222 233333333 333344555678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999988754 689999999999985 5999999999999999999998754
No 233
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.9e-39 Score=346.03 Aligned_cols=210 Identities=31% Similarity=0.481 Sum_probs=184.6
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH----HHHhc
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRK 460 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~ 460 (1198)
.+.|++|+|+.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467899999743 469999999999999999999999999999999999999999999999998876542 23567
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
.++|++|+|.+|+.|++||+.++.+ ...++..++++.+++.+.+..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998643 345566778888888888889999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHH--HHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 541 PRILLLDEATSALDAESEKVVQE--ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~--~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
|+++||||||++||+.+...+.+ .++.+. +++|+|++||+.+.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998887776 444443 3689999999999998899999999874
No 234
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-39 Score=352.02 Aligned_cols=217 Identities=23% Similarity=0.455 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999998777544 5778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|++.+|. .|++||+.++... .+.++.+ ..+.+.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999887 5999999875311 1122111 1223445555 566666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999998888765 4789999999998775 499999999999999999998865
No 235
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=352.55 Aligned_cols=218 Identities=30% Similarity=0.492 Sum_probs=184.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecC-CcCHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK-EFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~-~~~~~ 456 (1198)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999985 44566
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC-H----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-T----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
.+|+.++|++|+|.+|..|++||+.++... .. . +++.++++..++.+ ++..........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHH
Confidence 788899999999999999999999875321 11 1 12222333333222 2234556677899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
|++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999876 9999999999999999998886
Q ss_pred cC
Q 000984 609 ED 610 (1198)
Q Consensus 609 ~~ 610 (1198)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
No 236
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.7e-39 Score=367.86 Aligned_cols=207 Identities=29% Similarity=0.468 Sum_probs=173.4
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe----ecCCcCHHHH---h-cceEEEcCCCC
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWI---R-KKIGLVSQEPV 470 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 470 (1198)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||. ++...+...+ | ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 5666665544 3 57999999999
Q ss_pred CCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 471 LFT-GSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 471 l~~-~ti~~Ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
+|. .|++||+.++... .+.+ +..++++.. |++........+||||||||++|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~v-----------gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELV-----------GLAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 996 7999999986421 1222 223333333 444444556678999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
||||||||+||+.+.+.+++.+.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 999999999999999999999988754 789999999999875 5999999999999999999999876544443
No 237
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=355.92 Aligned_cols=220 Identities=26% Similarity=0.488 Sum_probs=185.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCcC-HH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQ-LQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~-~~ 456 (1198)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999987653 45
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHHHH
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
.+|++++|++|+|.+|..|+++|+.++... .++++..... .+.++.+ +..+++.+.....+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 678899999999999999999999875321 2333332211 1122222 22223456677889999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999888767899999999998765 999999999999999999999765
No 238
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-38 Score=354.15 Aligned_cols=212 Identities=26% Similarity=0.495 Sum_probs=182.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888788888999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
|++|++.++.+ |+.||+.++... .. .+++..+++.. |++.........||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHH
Confidence 99999988865 999999976311 01 12233333333 3444445667789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998865 47899999999998865 99999999999999999988764
No 239
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-39 Score=348.60 Aligned_cols=209 Identities=35% Similarity=0.515 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
|+++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 468999999964211 469999999999999999999999999999999999999999999999998763 35789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|+|.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE-----RAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999886 7999999875321 11111111 112233333 44444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEe--CCEEEEecCh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTH 604 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 604 (1198)
+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998874 3789999999999875 499999999 7999988764
No 240
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=351.28 Aligned_cols=204 Identities=32% Similarity=0.447 Sum_probs=174.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 46999999999999999999999999999999999999999999999997753 457789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+|++|+|.+|. .|++||+.++.....++++.++++.. |++........+||||||||++||||++++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999886 69999999764221223333334333 4444456667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 3689999999999875 49999999999999988754
No 241
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=362.35 Aligned_cols=229 Identities=31% Similarity=0.479 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCC-------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH
Q 000984 383 DIELRDVYFSYPARP-------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~ 455 (1198)
.|+++|++++|+.+. ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996421 2469999999999999999999999999999999999999999999999999988764
Q ss_pred H---HHhcceEEEcCCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCCh
Q 000984 456 Q---WIRKKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1198)
Q Consensus 456 ~---~~r~~i~~v~Q~~~--l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSg 525 (1198)
. .+|++|+||+|+|. ++. -|+.+|+..+. .....++..+ .+.+.++.+ |++ .........|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE-----KALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 56789999999993 443 58988886321 1112211111 112223333 332 123556678999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|||||++|||||+.+|++||+||||++||..+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988754 7899999999999975 9999999999999999
Q ss_pred ChhhHhcCCCchhHHH
Q 000984 603 THSKLVEDPEGAYSQL 618 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~ 618 (1198)
+.+++.+++...|.+.
T Consensus 238 ~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 238 TKEQIFNNPRHPYTQA 253 (327)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 9999988765556553
No 242
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7.6e-39 Score=363.20 Aligned_cols=217 Identities=25% Similarity=0.454 Sum_probs=180.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998654 35668899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||++.++. .|++||+.+... ..+..+....+ .+.++.+ |+..........||||||||++||||+++
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999998884 799999975211 12222222211 1122222 34434455556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 47899999999999865 999999999999999999998653
No 243
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=351.72 Aligned_cols=221 Identities=30% Similarity=0.520 Sum_probs=186.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1198)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 389999999999865 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+|++++|+||+|++|..|++||+.++... .+. +++.++++.+++.+++. ...++.+..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 6778899999999999999999999875321 111 23344455555443332 234566789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998876 899999999999999999998
Q ss_pred hcCCCc
Q 000984 608 VEDPEG 613 (1198)
Q Consensus 608 ~~~~~~ 613 (1198)
...+..
T Consensus 233 ~~~~~~ 238 (250)
T PRK14266 233 FINPKD 238 (250)
T ss_pred HhCCCC
Confidence 765433
No 244
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.1e-39 Score=332.60 Aligned_cols=172 Identities=39% Similarity=0.705 Sum_probs=161.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|++|..|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
+||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 47899999999999888999999999974
No 245
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.7e-39 Score=345.93 Aligned_cols=207 Identities=31% Similarity=0.543 Sum_probs=172.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999998765543 46899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.+|. .|++||+.++... ...++..+. +.+.++.+ |++.........||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 6999999875211 122221111 12223333 455555666778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999988753 7899999999998875 9999999999999876
No 246
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=353.08 Aligned_cols=222 Identities=22% Similarity=0.432 Sum_probs=184.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1198)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATT----------EEI--RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
++|++|+|.+|.+ |++||+.++...... ... ..........+.++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999975 999999975311000 000 0000111123344454 666677788889999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 6899999999999865 9999999999999999998
Q ss_pred hHhc
Q 000984 606 KLVE 609 (1198)
Q Consensus 606 ~l~~ 609 (1198)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8764
No 247
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=353.88 Aligned_cols=220 Identities=31% Similarity=0.461 Sum_probs=186.0
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecC----
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK---- 451 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~---- 451 (1198)
.+.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999963 3699999999999999999999999999999999999875 7999999998774
Q ss_pred CcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
..+...++++++|++|+|.+|.+|++||+.++... .. ++++..+++.+++.+ ++....+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 33456778899999999999999999999875311 11 233344444433322 33445667788999
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1198)
||||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877789999999999986 499999999999999999
Q ss_pred hhhHhcC
Q 000984 604 HSKLVED 610 (1198)
Q Consensus 604 ~~~l~~~ 610 (1198)
++++..+
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998754
No 248
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.6e-39 Score=349.28 Aligned_cols=212 Identities=34% Similarity=0.527 Sum_probs=174.8
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r 459 (1198)
|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEEcCCCC--CC-cccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 000984 460 KKIGLVSQEPV--LF-TGSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 460 ~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri 531 (1198)
++++|++|+|. ++ ..|+++|+.++... ..++....+. .+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 57999999764211 1111111110 1233443 453 456677789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1198)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988764 789999999999987 59999999999998764
No 249
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.3e-38 Score=346.27 Aligned_cols=212 Identities=25% Similarity=0.453 Sum_probs=179.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999888887788899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|++|+|.+|..|++||+.++.... ..... ..+.+.++.+ |+. +.......+||||||||++||||++++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999998642100 00000 1112334444 453 456777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEe-CCEEEEecChh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIH-RGKIVEKGTHS 605 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 605 (1198)
|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999988753 789999999999998899999995 66667788875
No 250
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=350.25 Aligned_cols=217 Identities=29% Similarity=0.499 Sum_probs=181.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC------CcCHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK------EFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~------~~~~~ 456 (1198)
.++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 46999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
.+|++++|+||+|.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++..+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 67889999999999886 599999974211 11222211 1223444444 6666667777899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
||||++++|+++||||||++||+++...+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 99999999999999999999999999999999988754 7899999999999865 99999999999999999988754
No 251
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=355.39 Aligned_cols=219 Identities=34% Similarity=0.516 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1198)
..|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999987 689999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
...+|++++|++|++.+|..|++||+.++... .. +++++++++..++.+. +....+....+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDE-------VKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCch-------hHHHHhCCcccCCHHHHH
Confidence 55678899999999999988999999864211 11 2233334433332211 123456677899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEE-EEeCCEEEEecChhhH
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA-VIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l 607 (1198)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988777899999999999875 99975 5799999999999988
Q ss_pred hcC
Q 000984 608 VED 610 (1198)
Q Consensus 608 ~~~ 610 (1198)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 654
No 252
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=353.99 Aligned_cols=219 Identities=32% Similarity=0.486 Sum_probs=184.2
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~ 454 (1198)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 4599999999999999999999999999999999999985 48999999998854 44
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...++.+++|++|+|.+|..|++||+.++... ..+ +.+.++++.+++.+++ .......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 56778899999999999999999999865211 111 2233444444443222 223456677899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe-----CCEEEEe
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-----RGKIVEK 601 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-----~G~i~~~ 601 (1198)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777999999999999865 99999997 5999999
Q ss_pred cChhhHhcC
Q 000984 602 GTHSKLVED 610 (1198)
Q Consensus 602 g~~~~l~~~ 610 (1198)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998754
No 253
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.6e-39 Score=346.23 Aligned_cols=201 Identities=30% Similarity=0.488 Sum_probs=169.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1198)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999876543 4678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|++|+|.+|. .|++||+.++... .. ++++++.++..++.+ .......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-----------KADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHH
Confidence 8999999999885 6999999875211 11 223344444444333 3334446899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
|||++++|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998875 47899999999999876 99999999985
No 254
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=355.75 Aligned_cols=217 Identities=28% Similarity=0.465 Sum_probs=178.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~~ 461 (1198)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 46999999999999999999999999999999999999999999999999985 3345567889
Q ss_pred eEEEcCCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPV--LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~--l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|+|. ++..|+.+|+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 567899999987421 1122222111 11222222 333334455678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998875 47899999999999865 999999999999999999888654
No 255
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.1e-38 Score=364.19 Aligned_cols=217 Identities=27% Similarity=0.493 Sum_probs=180.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...|+++
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||++.++ ..|++||+.+.... .+..+..+.++ +.++.+ |+.........+||||||||++|||||++
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999987 57999999853211 12222222111 122221 33333444556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998875 47999999999999865 999999999999999999998654
No 256
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.3e-38 Score=362.98 Aligned_cols=231 Identities=22% Similarity=0.396 Sum_probs=186.5
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcCHHHH
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~ 458 (1198)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.+||.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996432 246999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEEcCCCC--CCc-ccHHHHHhcCC---CCCCHHHH-HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 459 R----KKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEI-RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 459 r----~~i~~v~Q~~~--l~~-~ti~~Ni~~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
+ ++|+||+|+|. ++. .|+.+|+.... ...+.++. .++.+. .+.+ .+|++. ..++.....|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~---L~~v-gL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM---LDAV-KMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHHc-CCCChH-HHhcCCcccCCHHH
Confidence 3 47999999993 443 57777764321 11222222 222221 1111 234332 33577888999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
|||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 7899999999999875 999999999999999999
Q ss_pred hhHhcCCCchhHHH
Q 000984 605 SKLVEDPEGAYSQL 618 (1198)
Q Consensus 605 ~~l~~~~~~~~~~~ 618 (1198)
+++.+++...|.+.
T Consensus 247 ~~i~~~p~~pyt~~ 260 (330)
T PRK09473 247 RDVFYQPSHPYSIG 260 (330)
T ss_pred HHHHhCCCCHHHHH
Confidence 99998766666654
No 257
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=362.38 Aligned_cols=228 Identities=25% Similarity=0.343 Sum_probs=182.4
Q ss_pred cEEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~----~~~G~i~i~g~~~~~~~~~~ 457 (1198)
.++++|++++|+.+.. ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 369999999999999999999999999999999999997 48999999999999888766
Q ss_pred Hh----cceEEEcCCCC--CCc-ccHHHHHhcC---CCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 458 IR----KKIGLVSQEPV--LFT-GSIKDNIAYG---KDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 458 ~r----~~i~~v~Q~~~--l~~-~ti~~Ni~~~---~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
++ +.|+||+|+|. +.. -|+.+++... ...... +++.+.++..++.+. ....+....+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 54 36999999995 332 3565554321 101121 223333333332110 13456777899
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEE
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVE 600 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~ 600 (1198)
|||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988754 789999999999985 599999999999999
Q ss_pred ecChhhHhcCCCchhHHH
Q 000984 601 KGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~ 618 (1198)
.|+++++.+++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998766666544
No 258
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.5e-39 Score=345.48 Aligned_cols=205 Identities=37% Similarity=0.654 Sum_probs=171.3
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2469999999999999999999999999999999999999999999999999988777788899999
Q ss_pred EcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 465 VSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 465 v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|+|. ++..|++||+.++... .+..+... .+.+.++.+ |++.........||||||||++||||++++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999983 6688999999875321 12221111 112233333 455555666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999988754 7899999999999887 99999999985
No 259
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=351.68 Aligned_cols=221 Identities=30% Similarity=0.481 Sum_probs=181.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~~ 455 (1198)
.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++|. +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999865 344
Q ss_pred HHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC--C-CHHHHHHH----HHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--A-TTEEIRVA----TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~-~~~~~~~~----~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
..+|+.++|++|+|.+|. .|++||+.++... . .+++..+. ++..++.+ ++.........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD-------EVKDRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcch-------hhhhhhcCCcccCCHHH
Confidence 567889999999999887 5999999864321 1 22222221 11122111 12223345567899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++++|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777999999999999875 99999999999999999999
Q ss_pred HhcCCCc
Q 000984 607 LVEDPEG 613 (1198)
Q Consensus 607 l~~~~~~ 613 (1198)
+..++..
T Consensus 234 ~~~~~~~ 240 (252)
T PRK14272 234 LFTNPRD 240 (252)
T ss_pred HHhCcCc
Confidence 8765433
No 260
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=357.55 Aligned_cols=221 Identities=30% Similarity=0.462 Sum_probs=182.8
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCCc--C
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~ 454 (1198)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 359999999999999999999999999999999999864 4999999999988643 3
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...+|++++|++|+|.+|..|++||+.++... . +. +++.++++..++.+ ++..........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHH
Confidence 34578899999999999988999999875321 1 11 12223333332211 11233456678899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|||++||||++.+|++|||||||++||+++.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 99999999999999999999
Q ss_pred HhcCCC
Q 000984 607 LVEDPE 612 (1198)
Q Consensus 607 l~~~~~ 612 (1198)
+.+++.
T Consensus 268 ~~~~~~ 273 (286)
T PRK14275 268 LFTNPK 273 (286)
T ss_pred HHhCCC
Confidence 876533
No 261
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=350.93 Aligned_cols=213 Identities=27% Similarity=0.481 Sum_probs=182.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999963 4699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|++|++.+ +..|++||+.++.... . ++++.++++.. |++.........||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHH
Confidence 999999987 5789999998753211 1 11223333333 4444455567799999999999999
Q ss_pred hhc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhh
Q 000984 536 AIL------KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 536 al~------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|++ .+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999998875 4789999999999886 599999999999999999988
Q ss_pred Hhc
Q 000984 607 LVE 609 (1198)
Q Consensus 607 l~~ 609 (1198)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 864
No 262
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=355.46 Aligned_cols=218 Identities=33% Similarity=0.557 Sum_probs=180.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC--cCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 461 (1198)
|+++|++++|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.. .+...++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2469999999999999999999999999999999999999999999999999852 234567889
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
|+|++|+| .+|..|++||+.++... .+.++..+. +.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR-----VKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 57889999999875321 122221111 11222322 343334455678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+.+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999988754 7899999999999874 999999999999999999998754
No 263
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.4e-38 Score=360.44 Aligned_cols=216 Identities=22% Similarity=0.440 Sum_probs=184.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 4457788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|+||+|.++.. |++||+.+.... ...++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999865 999999753211 12222111 112334444 566666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999988778999999999998876 999999999999999999998653
No 264
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=351.97 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=183.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999963 469999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCC-CC------CCH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGK-DD------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~-~~------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
++|++|++.+| ..|++||+.++. +. ..+ +++.++++.. |++.........||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHH
Confidence 99999999887 479999998752 11 011 2233333333 44444556678999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
++||||++++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 6899999999998765 999999999999999999887
Q ss_pred hc
Q 000984 608 VE 609 (1198)
Q Consensus 608 ~~ 609 (1198)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
No 265
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=347.80 Aligned_cols=211 Identities=36% Similarity=0.560 Sum_probs=179.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|+++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 468999999963 4699999999999999999999999999999999999999999999999998876542 67899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|+|.+|.+ |++||+.++... .+. +++..+++.. |++..+.....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV-----------QLEGYANRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999864 999999864321 111 2223333333 44444555667999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988764 7899999999999865 999999999999999999888654
No 266
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=349.97 Aligned_cols=219 Identities=30% Similarity=0.417 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCCc--CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1198)
.+.+++.+++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++| .+|+|.++|.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4788999999953 4699999999999999999999999999999999999986 799999999998643 44
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
..+|+.++|++|+|++|..|++||+.++... ...+++.++++..++.+.+ ....++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence 4667889999999999999999999876321 1123445555555443322 223456778999999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe--------CCEEEEe
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH--------RGKIVEK 601 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~--------~G~i~~~ 601 (1198)
++||||++++|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988777899999999998765 99999996 8999999
Q ss_pred cChhhHhcCC
Q 000984 602 GTHSKLVEDP 611 (1198)
Q Consensus 602 g~~~~l~~~~ 611 (1198)
|+++++.+++
T Consensus 238 g~~~~~~~~~ 247 (261)
T PRK14263 238 GPTAQIFQNP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999987653
No 267
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-39 Score=337.24 Aligned_cols=224 Identities=34% Similarity=0.572 Sum_probs=190.0
Q ss_pred cEEEEeEEEEcCCCCC---------------------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 383 DIELRDVYFSYPARPN---------------------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~---------------------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
.|+++||+.-++.++. .--++|+||+++.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888887764321 1136899999999999999999999999999999999999999
Q ss_pred eEEECCeecCCcCHHHHh----cceEEEcCCCCCC-cccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCC
Q 000984 442 EVLIDGINLKEFQLQWIR----KKIGLVSQEPVLF-TGSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQ 510 (1198)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r----~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~ 510 (1198)
+|.++|.|+..++.++|| +++++|+|.--|| .-||.||..||.+-. ..++..++++.++|.++-.+.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC--
Confidence 999999999999987774 6899999999888 579999999986421 224455666667666655444
Q ss_pred CccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchh-hcc
Q 000984 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNA 587 (1198)
Q Consensus 511 g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~ 587 (1198)
...||||+|||+.|||||..+|+|||+|||+|||||--...+|+-+.++.+ +||+|+|||+++.. +-.
T Consensus 162 ---------p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 162 ---------PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ---------cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 457999999999999999999999999999999999999999988876543 69999999999875 559
Q ss_pred CEEEEEeCCEEEEecChhhHhcCCCchhHH
Q 000984 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1198)
|||..|++|+|++.|+|+|++.++...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999887655543
No 268
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.8e-38 Score=351.02 Aligned_cols=215 Identities=26% Similarity=0.465 Sum_probs=181.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEcCCCC-CCcccHHHHHhcCCCCC-------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 464 LVSQEPV-LFTGSIKDNIAYGKDDA-------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 464 ~v~Q~~~-l~~~ti~~Ni~~~~~~~-------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
|++|++. .+..|++||+.++.... .++. ...+.+.+..+ |+..........||||||||++|||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 150 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHD------AAVVDRALART--ELSHLADRDMSTLSGGERQRVHVAR 150 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHH------HHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHH
Confidence 9999995 45689999998753110 0111 01122333333 4444455667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 151 ALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999988754 689999999999995 599999999999999999988754
No 269
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3e-38 Score=346.22 Aligned_cols=215 Identities=33% Similarity=0.542 Sum_probs=180.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999963 369999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|+||+|.+|.+ |++||+.++... .+..... ..+.+.++.+ |+.........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999965 999999875321 1111111 1123344444 333344555678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+++||||||++||+++.+.+.+.+++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999988754 6899999999998765 999999999999999999998754
No 270
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-38 Score=350.78 Aligned_cols=219 Identities=32% Similarity=0.449 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999963 3699999999999999999999999999999999999863 58999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
..+|++++|++|++.+|..|+.+|+.++.... .++.+.++++.+++.+.+ ..........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHH
Confidence 56788999999999999889999998753211 122233344444433222 233456678899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe---------CCEEEE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH---------RGKIVE 600 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~ 600 (1198)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778999999999998865 99999997 899999
Q ss_pred ecChhhHhcCC
Q 000984 601 KGTHSKLVEDP 611 (1198)
Q Consensus 601 ~g~~~~l~~~~ 611 (1198)
.|+++++..++
T Consensus 250 ~g~~~~~~~~~ 260 (274)
T PRK14265 250 FSPTEQMFGSP 260 (274)
T ss_pred eCCHHHHHhCC
Confidence 99999987653
No 271
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=351.10 Aligned_cols=218 Identities=32% Similarity=0.496 Sum_probs=181.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1198)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999998853 445
Q ss_pred HHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
..+|+.++|++|++.+|. .|++||+.++... .+. +++.++++..++.+ +..........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 677889999999999886 6999999864311 111 12223333333221 11234566778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEe------CCEEEE
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH------RGKIVE 600 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~------~G~i~~ 600 (1198)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877789999999999886 599999997 899999
Q ss_pred ecChhhHhcC
Q 000984 601 KGTHSKLVED 610 (1198)
Q Consensus 601 ~g~~~~l~~~ 610 (1198)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998754
No 272
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.5e-38 Score=344.05 Aligned_cols=202 Identities=33% Similarity=0.542 Sum_probs=169.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH---HHHhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1198)
++++|++++|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 469999999999999999999999999999999999999999999999999887654 34678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
.++|++|+|.+|. .|++||+.++... .+.+ ++.++++.. |++........+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV-----------GLSHKHRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhcCHHHHHHHHH
Confidence 8999999999887 5999999875311 1222 223333333 44444455566899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
|||++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 47899999999999875 899999999974
No 273
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=356.92 Aligned_cols=219 Identities=30% Similarity=0.526 Sum_probs=184.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCeEEECCeecCCc--C
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~ 454 (1198)
..|+++|++++|+. .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999964 469999999999999999999999999999999999986 6899999999998653 4
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC-------------------CHHHHHHHHHHhcHHHHHHhCCCCccch
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-------------------TTEEIRVATELANAAKFIDKLPQGIDTL 515 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~-------------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 515 (1198)
...+|++++|++|++.+|.+|++||+.++.... .++++..+++.++ +++++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA-------LWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC-------CchhhhHH
Confidence 567788999999999999999999999753210 0112233333322 23344556
Q ss_pred hcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEE-EEE
Q 000984 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMI-AVI 593 (1198)
Q Consensus 516 v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i-~~l 593 (1198)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 67788899999999999999999999999999999999999999999999988777899999999999865 9997 567
Q ss_pred eCCEEEEecChhhHhcC
Q 000984 594 HRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 594 ~~G~i~~~g~~~~l~~~ 610 (1198)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999988754
No 274
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1e-38 Score=344.81 Aligned_cols=197 Identities=31% Similarity=0.516 Sum_probs=164.6
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++++|+
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 6799999963 45999999999999999999999999999999999999999999999998764 467789999
Q ss_pred cCCCCC---CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 466 SQEPVL---FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 466 ~Q~~~l---~~~ti~~Ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
+|+|.+ ++.|++||+.++.... . .+++.++++.. |++........+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV-----------GLSELADRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHH
Confidence 999976 5689999998754311 1 12233333333 3333344556789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998875 57899999999999865 8999999886 55543
No 275
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4e-38 Score=350.17 Aligned_cols=224 Identities=29% Similarity=0.471 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee-----cCCcCHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-----~~~~~~~~ 457 (1198)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 469999999999999999999999999999999999999999999999998 77666544
Q ss_pred ----HhcceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChH
Q 000984 458 ----IRKKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ----~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgG 526 (1198)
.++.++|++|+|. ++ ..|+.+|+.+.. ......+... ...+.++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 458888886421 1111122211 123455565 443 4677888999999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++++|++|||||||++||+.+.+.+.+.++++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988654 7899999999999974 99999999999999999
Q ss_pred hhhHhcCCCchhH
Q 000984 604 HSKLVEDPEGAYS 616 (1198)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1198)
++++..++...|.
T Consensus 236 ~~~~~~~~~~~~~ 248 (258)
T PRK11701 236 TDQVLDDPQHPYT 248 (258)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765433343
No 276
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-38 Score=340.34 Aligned_cols=201 Identities=31% Similarity=0.536 Sum_probs=169.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999632 2 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC-CC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKD-DA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|+|.+|.+ |++||+.++.. .. .++++.++++..++.+ .......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-----------LEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-----------HHhCCcccCCHHHHHHHHHHHH
Confidence 99999999864 99999987532 11 1233444455444433 3344456899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
++++|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999988753 7899999999999865 9999999999998754
No 277
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-38 Score=350.55 Aligned_cols=221 Identities=31% Similarity=0.506 Sum_probs=184.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCeEEECCeecCC--cC
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQ 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~ 454 (1198)
+.|+++|++++|+. +.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35999999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
...+|+.++|++|++.+|..|++||+.++... .+. +++.++++..++.++ ++...+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHH
Confidence 55678899999999999999999999864211 111 223334444433222 2234566778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC-----CEEE
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR-----GKIV 599 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~-----G~i~ 599 (1198)
|||++||||++++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998864 47999999999999865 999999999 9999
Q ss_pred EecChhhHhcCCC
Q 000984 600 EKGTHSKLVEDPE 612 (1198)
Q Consensus 600 ~~g~~~~l~~~~~ 612 (1198)
+.|+++++...+.
T Consensus 236 ~~~~~~~~~~~~~ 248 (261)
T PRK14258 236 EFGLTKKIFNSPH 248 (261)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999976533
No 278
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-38 Score=350.80 Aligned_cols=216 Identities=26% Similarity=0.397 Sum_probs=183.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--------CCeEEECCeecCCcCH
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--------AGEVLIDGINLKEFQL 455 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~--------~G~i~i~g~~~~~~~~ 455 (1198)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 46999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEcCCCC-CCcccHHHHHhcCCCCC-C-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPV-LFTGSIKDNIAYGKDDA-T-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~-l~~~ti~~Ni~~~~~~~-~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..+++.++|++|++. +|..|++||+.++.... . .++.. ..+.+.++.+ |+++..+.....||||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG-----EIAWQALALA--GATALVGRDVTTLSGGEL 151 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHH-----HHHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 888888999999986 57889999998753111 0 01111 1112233333 666667778889999999
Q ss_pred HHHhHHHhhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCC
Q 000984 529 QRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1198)
Q Consensus 529 qri~lARal~---------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1198)
||++||||++ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||++++|++|
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999999988754 689999999999986 59999999999
Q ss_pred EEEEecChhhHhc
Q 000984 597 KIVEKGTHSKLVE 609 (1198)
Q Consensus 597 ~i~~~g~~~~l~~ 609 (1198)
++++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999999988854
No 279
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-38 Score=349.74 Aligned_cols=219 Identities=30% Similarity=0.470 Sum_probs=182.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCeEEECCeecCC--cCH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~--~~~ 455 (1198)
.|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999865 4 58999999998864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC--C-CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--D-ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++++++|++|+|.+|..|+++|+.++.. . ... +++.++++.+++. .++.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 567789999999999999999999986421 1 111 1222223332221 1223445667789999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999999988
Q ss_pred hcCC
Q 000984 608 VEDP 611 (1198)
Q Consensus 608 ~~~~ 611 (1198)
..++
T Consensus 235 ~~~~ 238 (252)
T PRK14255 235 FLNP 238 (252)
T ss_pred hcCC
Confidence 7653
No 280
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-38 Score=343.20 Aligned_cols=209 Identities=29% Similarity=0.495 Sum_probs=176.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +.+++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 2 2399999999999999999999999999999999999999999999998766442 56899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC-CC--C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKD-DA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~-~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|+|.+|.+ |++||+.++.. .. . ++++.++++..++ +..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI-----------EDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc-----------HHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999874 99999987531 11 1 2234444444444 334444556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999988754
No 281
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.8e-38 Score=342.44 Aligned_cols=207 Identities=28% Similarity=0.478 Sum_probs=171.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hhc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IRK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r~ 460 (1198)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 246999999999999999999999999999999999999999999999999998776443 678
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 461 KIGLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
.++|++|+|.++ ..|++||+.++.. ..+.++..+.+ .+.++.+ |++........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 999999999874 6899999987521 12222222111 1122222 344444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999998874 46899999999999876 8999999999985
No 282
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-38 Score=342.12 Aligned_cols=205 Identities=26% Similarity=0.492 Sum_probs=171.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999987753 4577899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 5999999864211 1111111 1123344444 565566677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998865 46899999999998865 9999999999998764
No 283
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.6e-38 Score=343.46 Aligned_cols=208 Identities=27% Similarity=0.405 Sum_probs=173.2
Q ss_pred cEEEEeEEEEcCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---H
Q 000984 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~ 458 (1198)
.|+++|++++|+.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964321 35999999999999999999999999999999999999999999999999998876543 2
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
+++++|++|+|.++. .|++||+.++.. .... +++.++++.. |+..........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL-----------GLGKRLDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCChhhCCHHHHHH
Confidence 367999999999886 599999986421 1111 2233333333 33333445556899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 6899999999999888999999999999763
No 284
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-38 Score=348.69 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=184.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC------eecCCcCHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG------INLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g------~~~~~~~~~ 456 (1198)
.|.++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4899999999964 4699999999999999999999999999999999999999987666655 666666777
Q ss_pred HHhcceEEEcCCCCCCcc-cHHHHHhcCCCC--C-CHHHH----HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 457 WIRKKIGLVSQEPVLFTG-SIKDNIAYGKDD--A-TTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~-~~~~~----~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
.+|.+++|++|+|.+|.+ |+++|+.++... . .+++. .++++..++.+.+ ....+..+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 788999999999999875 999999875321 1 22222 2222222221111 1234567788999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||++||||++.+|+++||||||++||+.+.+.+.+.+.++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877799999999999985 5999999999999999999999
Q ss_pred hcCCCchhH
Q 000984 608 VEDPEGAYS 616 (1198)
Q Consensus 608 ~~~~~~~~~ 616 (1198)
.+++...+.
T Consensus 240 ~~~~~~~~~ 248 (257)
T PRK14246 240 FTSPKNELT 248 (257)
T ss_pred HhCCCcHHH
Confidence 876443343
No 285
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.6e-38 Score=341.89 Aligned_cols=205 Identities=32% Similarity=0.566 Sum_probs=172.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC--cCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 461 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 469999999999999999999999999999999999999999999999998853 345567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|+|.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999886 699999987531 122222111 112334444 555566677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988754 6899999999999865 999999999974
No 286
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.7e-39 Score=317.25 Aligned_cols=224 Identities=24% Similarity=0.447 Sum_probs=187.1
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RK 460 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1198)
+.+..+|+..+|.. +++.+++||++++||.|++.||||+||||...++.|+..|++|+|.+||.|+..++.+.. |-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35788999999964 469999999999999999999999999999999999999999999999999999998764 56
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
.|||+||+|.+|. -||+|||..-.+. .....+...+...+++.++.+ ++...-...+..||||||.|+-|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 7999999999996 5999999864332 111112122222333344444 56777788899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCC-CeEEEEecCc-chhhccCEEEEEeCCEEEEecChhhHhcCC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~-~t~i~itH~~-~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
+|+.+|||||+|++||.+...|++.|+.+... --|++.-|.. +++.-|||.+++.+|+|..+|+|+|+.+++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999888654 4455555886 467889999999999999999999998863
No 287
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-38 Score=361.03 Aligned_cols=212 Identities=28% Similarity=0.481 Sum_probs=180.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHHHHh
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~~r 459 (1198)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 89999953 2 23 89999999999999999999999999999999999999999999998653 234567
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++++|++|++.+|. .|++||+.++......+++.+.++.. |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-----------GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 89999999999985 69999999875433334444444444 4444455666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999988754 6899999999998765 99999999999999999999987653
No 288
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-38 Score=358.48 Aligned_cols=228 Identities=23% Similarity=0.346 Sum_probs=183.7
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~----~~~G~i~i~g~~~~~~~~~~ 457 (1198)
.++++|++++|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.+.+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996432 2469999999999999999999999999999999999986 58999999999998887665
Q ss_pred Hh----cceEEEcCCCCC--C-cccHHHHHhcCCC---CC-----C----HHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 000984 458 IR----KKIGLVSQEPVL--F-TGSIKDNIAYGKD---DA-----T----TEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1198)
Q Consensus 458 ~r----~~i~~v~Q~~~l--~-~~ti~~Ni~~~~~---~~-----~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~ 518 (1198)
++ ++|+||+|+|.. . ..||.+|+..... .. . .+++.+.++..++.+. ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 43 479999999973 3 3589999864210 00 1 1122333333332210 123456
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeC
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1198)
....||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6679999999999999999999999999999999999999999999988754 6899999999999965 999999999
Q ss_pred CEEEEecChhhHhcCCCchhHHH
Q 000984 596 GKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 596 G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
|+|+|.|+++++..++...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999987765666553
No 289
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.7e-38 Score=343.38 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=170.9
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCeEEECCeecCCcCHHHHh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
+.++||+++|+... .+++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57899999997542 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++++|++|++.+|.+ |++||+.++...................+ .++.+ |+..........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999976 99999987421110000000000000111 22222 444444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCc-chh-hccCEEEEEeCCEEEEec
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRL-STV-RNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~-~~~-~~~d~i~~l~~G~i~~~g 602 (1198)
+++|+++||||||++||+.+.+.+.+.++++. +++|+|++||++ ..+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998865 468999999998 355 569999999999998865
No 290
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9.1e-38 Score=348.35 Aligned_cols=219 Identities=24% Similarity=0.432 Sum_probs=179.5
Q ss_pred cEEEEeEEEEcCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH
Q 000984 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1198)
.|+++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEcCCCC--CCc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 457 WIRKKIGLVSQEPV--LFT-GSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~--l~~-~ti~~Ni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
..+++++|++|+|. ++. -|+.+|+.+... .... +++.++++.+++. .........+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----------PDHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHHhcCchhcCHH
Confidence 66678999999985 443 489999875311 1111 2233344443331 11223345689999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999988753 7899999999999876 99999999999999999
Q ss_pred hhhHhcCC
Q 000984 604 HSKLVEDP 611 (1198)
Q Consensus 604 ~~~l~~~~ 611 (1198)
++++.+.+
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987653
No 291
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=304.64 Aligned_cols=192 Identities=29% Similarity=0.535 Sum_probs=168.5
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHH
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1198)
+.++|+|+||++.+||+++|+||||||||||++.++-+.+|++|.+++.|.+++.++++.+|.+|+||.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCC
Q 000984 478 DNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1198)
Q Consensus 478 ~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1198)
||+.|+.. ..+.... .+++..+. -.++.+..+..+||||+|||+||+|-|---|+||+||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa---------~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAA---------LDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHH---------HHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99998632 1111211 22333331 2356677888899999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh--CCCeEEEEecCcch-hhccCEEEEEeCCEEE
Q 000984 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHRGKIV 599 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~-~~~~d~i~~l~~G~i~ 599 (1198)
|+.+.+.|.+.|..+. ++..++.|||+... ++.+|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998876 46899999999987 7889999999999863
No 292
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-38 Score=341.88 Aligned_cols=210 Identities=30% Similarity=0.555 Sum_probs=178.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~--~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh--HcCEE
Confidence 468999999962 289999999999999999999999999999999999999999999999998776543 67899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
|++|++.+|. .|++||+.++.... +. +++.++++.. |+...+.....+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----------GIDHLLNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CChhHHhcCcccCCHHHHHHHHHHHH
Confidence 9999999884 79999998753221 11 1222333333 34444455667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++++|++++|||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988654 7899999999999875 999999999999999999988764
No 293
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=347.48 Aligned_cols=220 Identities=24% Similarity=0.389 Sum_probs=179.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCc-----C
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF-----Q 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~-----~ 454 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999886 49999999988653 2
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHH--H---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTE--E---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~--~---~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
...++++++|+||++.+|. .|+++|+.++....... . .........+.+.++.+ |++.........||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 3556788999999999886 59999998753211000 0 00000011122334433 454455667778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998753 689999999999865 59999999999999999999
Q ss_pred hH
Q 000984 606 KL 607 (1198)
Q Consensus 606 ~l 607 (1198)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
No 294
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.5e-38 Score=346.08 Aligned_cols=215 Identities=26% Similarity=0.396 Sum_probs=174.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHHH-hc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWI-RK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1198)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 46999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCC-CCChHHH
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGT-QLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~-~lSgGqk 528 (1198)
.++|++|+|.+|.+ |+++|+.+.... .+.++..+ .+.+.++.+ |++.. ...... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999998864 899999764211 01111111 112233333 44322 233333 5999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 46899999999999875 7999999999999999987
Q ss_pred hHh
Q 000984 606 KLV 608 (1198)
Q Consensus 606 ~l~ 608 (1198)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 654
No 295
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-38 Score=313.98 Aligned_cols=219 Identities=28% Similarity=0.474 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+++.+++.+|++ -..+++|+||+++.||.+||.|+|||||||++++|.+++.|++|.|.+||.|+... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 688999999975 23589999999999999999999999999999999999999999999999998654 456788999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+++-+.-|+ ..|+||||.|...-+.-.+.....+...+.+. | +++..+..+..+||-|+|||++|||||.++|+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~---l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKR---L--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---h--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 999777777 57999999974321221222222233333332 2 45555566666899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+++||||||+||..+.+.+++-+..+.. ++++|+.||.++.++ -||+|+++++|+++..|+++++.+.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999988875 899999999999998 5999999999999999999988653
No 296
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.1e-37 Score=336.35 Aligned_cols=201 Identities=31% Similarity=0.502 Sum_probs=169.6
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+++.++|
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 68999999952 468999999999999999999999999999999999999999999999987643 35778999
Q ss_pred EcCCCCCCc-ccHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 465 VSQEPVLFT-GSIKDNIAYGK-DDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 465 v~Q~~~l~~-~ti~~Ni~~~~-~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|+|.+|. .|++||+.++. +.. .++++.++++..++. ........+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-----------DYLDRLPEQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-----------HHhhCCcccCCHHHHHHHHHHHHH
Confidence 999999886 59999998642 111 122334444444443 334444568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999988753 6899999999998865 99999999999998874
No 297
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5.7e-38 Score=355.87 Aligned_cols=204 Identities=22% Similarity=0.432 Sum_probs=170.7
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc-cHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIK 477 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 477 (1198)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 345678899999999998864 999
Q ss_pred HHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 478 DNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 478 ~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
||+.+.... .+..+..+ ...+.++.+ |+.........+||||||||++||||++++|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999864211 12121111 112233333 444445556678999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999998875 46899999999999875 999999999999999999998653
No 298
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8e-38 Score=350.06 Aligned_cols=214 Identities=31% Similarity=0.537 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++.+|+. +..+|+||||+|++||++|++||||||||||+++|+|++.|++|+|.++|.+...- ....|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999963 24699999999999999999999999999999999999999999999999988765 67788999
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
||+||+|.++ .-|++||+.|...- ..++++.+.++..++.+ .-......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-----------KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-----------hhCcchhhcCHHHHHHHHHHH
Confidence 9999999977 46999999873211 12345555555554432 124456689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-C-CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998875 4 699999999999987 999999999999999999987643
No 299
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.8e-37 Score=345.89 Aligned_cols=221 Identities=28% Similarity=0.446 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-
Q 000984 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL- 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~- 455 (1198)
.|+++|++++|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999631 12579999999999999999999999999999999999999999999999999887765
Q ss_pred --HHHhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChH
Q 000984 456 --QWIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGG 526 (1198)
Q Consensus 456 --~~~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgG 526 (1198)
..+|+.++|++|++. ++ ..|+++|+.+... ..+..+ ....+.+.+..+ |+++ ..+.....||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346789999999984 43 4799999865311 111111 111233445544 6663 567778899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988754 7899999999999975 99999999999999999
Q ss_pred hhhHhcC
Q 000984 604 HSKLVED 610 (1198)
Q Consensus 604 ~~~l~~~ 610 (1198)
++++...
T Consensus 236 ~~~~~~~ 242 (268)
T PRK10419 236 VGDKLTF 242 (268)
T ss_pred hhhccCC
Confidence 9998754
No 300
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=344.02 Aligned_cols=207 Identities=28% Similarity=0.469 Sum_probs=171.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 4699999999999999999999999999999999999999999999999987642 24699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.+|. .|+++|+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 6999999875211 1221111 1122334444 455455566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEe--CCEEEEecChh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH--RGKIVEKGTHS 605 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 605 (1198)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999998864 37899999999998865 99999998 59999987653
No 301
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.8e-37 Score=358.41 Aligned_cols=214 Identities=33% Similarity=0.519 Sum_probs=179.1
Q ss_pred eEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHHhcceE
Q 000984 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKKIG 463 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~r~~i~ 463 (1198)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ....|++++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999953 2 34 999999999999999999999999999999999999999999999986532 235678899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|++|++.+|. .|++||+.++.......+.. ..+.+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999996 59999999864322221111 1122334444 66666677778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCc
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1198)
+|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 225 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCc
Confidence 9999999999999999999999988754 6899999999998865 999999999999999999999876443
No 302
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-37 Score=331.00 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCeEEECCeecCCcCHHHH
Q 000984 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
.+.++|++|.|+.. .++++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999864 34679999999999999999999999999999999999999 89999999999987764 356
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+++++|++|++.+|. .|++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~----------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC------K----------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh------c----------------------cccchhhCCHHHHHHHHHHHHH
Confidence 778999999998886 5999999864210 0 2234467999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecC-cchh-hccCEEEEEeCCEEEEec
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHR-LSTV-RNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~-~~~~-~~~d~i~~l~~G~i~~~g 602 (1198)
+++|+++||||||++||+++.+.+.+.++++.+ ++|+|+++|+ .+.+ ..||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 4676776655 5665 459999999999998764
No 303
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-37 Score=321.90 Aligned_cols=171 Identities=53% Similarity=0.927 Sum_probs=160.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++. ..++++|+||++++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999643 236999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|.+|..|+.||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999988877799999999999998899999999984
No 304
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.8e-37 Score=336.49 Aligned_cols=208 Identities=30% Similarity=0.474 Sum_probs=174.3
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HHh
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1198)
++++|+++.|+... .+++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 25699999999999999999999999999999999999999999999999998776643 467
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+.++|++|+|.+|. .|+.+|+.++.. ..+.++... .+.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 89999999999886 799999987532 122222221 122334444 5555566667789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
|++++|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999988764 7999999999997777999999999986
No 305
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-37 Score=322.53 Aligned_cols=170 Identities=34% Similarity=0.640 Sum_probs=156.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999963 35999999999999999999999999999999999999999999999999987665 56788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|++|+|.+|.+ |++||+. ||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999998875 9999984 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEE
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i 598 (1198)
++||||||++||+.+.+.+.+.++++. ++.|+|++||+.+.+. .||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998875 3589999999999887 5999999999974
No 306
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.7e-37 Score=341.72 Aligned_cols=224 Identities=27% Similarity=0.440 Sum_probs=182.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee-----cCCcCHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-----~~~~~~~~ 457 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999987 66665543
Q ss_pred ----HhcceEEEcCCCC--C-CcccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChH
Q 000984 458 ----IRKKIGLVSQEPV--L-FTGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ----~r~~i~~v~Q~~~--l-~~~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgG 526 (1198)
+++.++|++|+|. + +..|+.+|+.+.. ......+. ...+.+.++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 2467999999984 2 2458888885321 10111111 12234556666 454 5677788899999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++||||++++|++|||||||++||+.+.+.+.+.+++..+ +.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 7899999999999875 99999999999999999
Q ss_pred hhhHhcCCCchhH
Q 000984 604 HSKLVEDPEGAYS 616 (1198)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1198)
++++..++...|.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T TIGR02323 233 TDQVLDDPQHPYT 245 (253)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765433333
No 307
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.2e-37 Score=340.93 Aligned_cols=216 Identities=29% Similarity=0.431 Sum_probs=176.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCeEEECCeecCCcCHHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~ 458 (1198)
.|+++|++++| . +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3599999999999999999999999999999999999999 999999999988632 222
Q ss_pred hcceEEEcCCCC-CCc--ccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 459 RKKIGLVSQEPV-LFT--GSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 459 r~~i~~v~Q~~~-l~~--~ti~~Ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
++.++|++|+|. .|. .|+.+|+.+. .....++++++.++..++.+ .++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHH
Confidence 467999999984 443 5888887531 11122234444444433221 11245777789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+||||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 6899999999999864 9999999999999999999987
Q ss_pred cCCC
Q 000984 609 EDPE 612 (1198)
Q Consensus 609 ~~~~ 612 (1198)
+++.
T Consensus 230 ~~~~ 233 (254)
T PRK10418 230 NAPK 233 (254)
T ss_pred hCCC
Confidence 6543
No 308
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-37 Score=322.22 Aligned_cols=172 Identities=42% Similarity=0.684 Sum_probs=158.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC--HHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--~~~~r~~ 461 (1198)
|+++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999963 46999999999999999999999999999999999999999999999999998775 5667889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
++|++|+|.+|. .|++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999885 5999999753 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988765 5899999999999984 99999999984
No 309
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-37 Score=331.42 Aligned_cols=202 Identities=33% Similarity=0.516 Sum_probs=169.0
Q ss_pred eEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc----CHHHHhcceE
Q 000984 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIRKKIG 463 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~~r~~i~ 463 (1198)
|++++|++ ..+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....+++++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 89999964 234 99999999 99999999999999999999999999999999999988643 2345678899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|++|++.+|. .|+++|+.++......++. ...+.+.++.+ |++.........||||||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHH-----HHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999985 6999999875432222111 11223445554 66666677788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1198)
++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988753 689999999999886 49999999999998765
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.4e-37 Score=316.37 Aligned_cols=163 Identities=30% Similarity=0.493 Sum_probs=150.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+.. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999632 46999999999999999999999999999999999999999999999873 5899
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++|+|.++++|++||+.++ ....||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999863 2468999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCC
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1198)
+||||||++||+++.+.+.+.++++ ++|+|++||+.+....||+|++|++|
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999999999999999999876 58999999999988789999999876
No 311
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.8e-37 Score=325.51 Aligned_cols=183 Identities=29% Similarity=0.500 Sum_probs=161.4
Q ss_pred cEEEEeEEEEcCCC---CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHH
Q 000984 383 DIELRDVYFSYPAR---PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~---~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
.|+++|++++|+.. .++++|+|+||++++||+++|+||||||||||+++|+|++ +|.+|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999742 1256999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++++++|++|++.+|. .|++||+.++.. +. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------------~~---------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------------LR---------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------------------hc---------------cCCHHHHHHHHHHHH
Confidence 6788999999999886 599999975310 00 799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcc-hhh-ccCEEEEEeCCEEEEec
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g 602 (1198)
++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4789999999996 454 59999999999998754
No 312
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.1e-37 Score=353.98 Aligned_cols=227 Identities=32% Similarity=0.526 Sum_probs=187.3
Q ss_pred ccEEEEeEEEEcCCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee--cC
Q 000984 382 GDIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--LK 451 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~--~~ 451 (1198)
.-++++|++.+|..+. ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 3478999999997421 2468999999999999999999999999999999999999999999999977 23
Q ss_pred CcCHHHHhcceEEEcCCCCCC---cccHHHHHhcCCCC---CC-H---HHHHHHHHHhcHHHHHHhCCCCccc-hhcCCC
Q 000984 452 EFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYGKDD---AT-T---EEIRVATELANAAKFIDKLPQGIDT-LVGEHG 520 (1198)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~---~~ti~~Ni~~~~~~---~~-~---~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g 520 (1198)
.-+....|+++-+|+|||.-. ..||+++|.-.... .. . +++.+.++.+ |+.. ......
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V-----------gL~~~~l~ryP 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV-----------GLPPEFLDRYP 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc-----------CCCHHHHhcCc
Confidence 233556788999999999633 46999999743211 11 1 1122223333 3333 467778
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
..||||||||+||||||..+|+++|+|||||+||+-+...+.+.++++.+ +.|.|+|||++..++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 89999999999999999999999999999999999999999999988754 5899999999999987 99999999999
Q ss_pred EEEecChhhHhcCCCchhHHHH
Q 000984 598 IVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 598 i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
|+|.|+.+++.+.+...|.+..
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHH
Confidence 9999999999998877777654
No 313
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.1e-37 Score=333.28 Aligned_cols=205 Identities=26% Similarity=0.431 Sum_probs=172.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 468999999963 46999999999999999999999999999999999999999999999998875322 24799
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++. .|++||+.++.. ..+++++.+.++..++ +........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL-----------TNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC-----------cHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 699999986321 1234444444444443 3334445578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4689999999999986 599999999999999998764
No 314
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-37 Score=328.66 Aligned_cols=228 Identities=28% Similarity=0.490 Sum_probs=182.7
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-C----CCCeEEECCeecCCcCHHH
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-P----QAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~----~~G~i~i~g~~~~~~~~~~ 457 (1198)
++++|++.+|+... ...+++||||++++||.+||||.|||||||+.++|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997543 2468999999999999999999999999999999999997 4 5799999999999998764
Q ss_pred ---Hh-cceEEEcCCCC-CCc--ccH----HHHHhcCCCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 458 ---IR-KKIGLVSQEPV-LFT--GSI----KDNIAYGKDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 458 ---~r-~~i~~v~Q~~~-l~~--~ti----~~Ni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
+| +.|++|+|||- -+| -|| .|-+.......+. ++..+.++.+++.+ -+..+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 44 57999999983 233 233 3444321111011 22333333333321 12345667789
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
||||||||+.||-|+..+|++||.||||+|||..+.++|.+.++++.+ +.++|+|||++..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999988764 7899999999998865 9999999999999
Q ss_pred EecChhhHhcCCCchhHHHH
Q 000984 600 EKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1198)
|.|+.+++.+++...|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999998887777654
No 315
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.3e-37 Score=321.55 Aligned_cols=172 Identities=24% Similarity=0.459 Sum_probs=156.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.|+++|++++| +|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+. ...|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 8999999999999999999999999999999999999999999999999988764 456788
Q ss_pred eEEEcCCC----CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~----~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|++|+| .++..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 3446799999986421 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+++|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998875 47899999999998876 999999999974
No 316
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-37 Score=316.70 Aligned_cols=220 Identities=29% Similarity=0.517 Sum_probs=188.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1198)
++.++++.+|+. -.+++|+||++++||+++|+|||||||||++++|.|+|+|++|+|.++|.||..++++.+ |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999963 469999999999999999999999999999999999999999999999999999998876 5679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDA------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+--+|.+.+|. .||-||+..+.... ..++ .++.+ .+.+.++.+ |++..-.+...+||+||+.
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e-~~~~e--~A~~~Le~v--gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE-REARE--RARELLEFV--GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhH-HHHHH--HHHHHHHHc--CCchhhcchhhcCChhHhH
Confidence 99999999995 69999999763211 0111 11111 112334443 7888888888899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|+.|||||..+|++|+||||.+++.+.....+.+.|+++.+ +.|+++|.|+++.+.. ||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 99999999999999999999999999988899999998875 3899999999999876 99999999999999999999
Q ss_pred HhcCC
Q 000984 607 LVEDP 611 (1198)
Q Consensus 607 l~~~~ 611 (1198)
..+++
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 98763
No 317
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-37 Score=323.91 Aligned_cols=182 Identities=26% Similarity=0.437 Sum_probs=160.1
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
.|+++|+++.|+... ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 488999999997421 256999999999999999999999999999999999986 489999999999875 5667
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++++|++|+|.+|. .|++||+.++.. + . +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~---------~---------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------L---------R---------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------H---------h---------------cCCHHHhHHHHHHHHHh
Confidence 88999999998886 599999985310 0 0 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcch--hhccCEEEEEeC-CEEEEec
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLST--VRNADMIAVIHR-GKIVEKG 602 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~--~~~~d~i~~l~~-G~i~~~g 602 (1198)
++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999988753 7899999999984 456999999999 9998865
No 318
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2e-36 Score=322.58 Aligned_cols=185 Identities=29% Similarity=0.499 Sum_probs=162.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHH-hc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-RK 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1198)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4699999999999999999999999999999999999 58999999999999988876554 55
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+++|++|+|.++.+ |+++|+ .. ...+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999998875 555554 00 114799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhh--ccCEEEEEeCCEEEEecChhhHh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR--NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++.+.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999999988754 689999999999987 59999999999999999 44453
No 319
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.3e-37 Score=328.37 Aligned_cols=198 Identities=29% Similarity=0.504 Sum_probs=161.9
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH----HHHhcc
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRKK 461 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~~ 461 (1198)
++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+.. ...+++
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 469999999999999999999999999999999999999999999999999765432 245678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++|++|+|.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE-----KKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999986 7999999874321 11111111 112223333 4444455666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhccCEEEEE
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999988754 78999999999988789999875
No 320
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=338.21 Aligned_cols=210 Identities=25% Similarity=0.410 Sum_probs=171.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ...+..+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999963 2469999999999999999999999999999999999999999999999988742 1123469
Q ss_pred EEEcCCCCC---CcccHHHHHhcCCCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 463 GLVSQEPVL---FTGSIKDNIAYGKDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 463 ~~v~Q~~~l---~~~ti~~Ni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+|+||+|.+ +..++++|+.++... .. .+++.++++..+ +.........+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVD-----------MVEFRHRQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcC-----------ChhHhcCCcccCCHHHHH
Confidence 999999865 456899998754210 01 122333333333 333344556689999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhH
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 4789999999999875 49999777 8999999999987
Q ss_pred hc
Q 000984 608 VE 609 (1198)
Q Consensus 608 ~~ 609 (1198)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 53
No 321
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3e-36 Score=334.48 Aligned_cols=218 Identities=24% Similarity=0.417 Sum_probs=175.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++.+.+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999963 4699999999999999999999999999999999998 6899999999999998887666554
Q ss_pred -ceEEEcCCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCC-CCChHHHHH
Q 000984 461 -KIGLVSQEPVLFTG-SIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT-QLSGGQKQR 530 (1198)
Q Consensus 461 -~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~-~lSgGqkqr 530 (1198)
.++|++|+|.++.+ |+++|+.++.... .+....+.. ..+.+.+..+ |+. +..+.... .||||||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHH
Confidence 58999999998864 8999987642100 000000000 1112223332 333 33444444 599999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhhH
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 607 (1198)
++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999999998875 47899999999998875 899999999999999998743
No 322
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.1e-36 Score=333.60 Aligned_cols=218 Identities=25% Similarity=0.372 Sum_probs=168.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCeEEECCeecCCcCHHHHh-c
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR-K 460 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r-~ 460 (1198)
|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.+.+....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999963 45999999999999999999999999999999999994 69999999999999887766554 5
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCCC---CHHH-HHHHHHHhcHHHHHH--hCCCCccchhcCCC-CCCChHHHHHHh
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDA---TTEE-IRVATELANAAKFID--KLPQGIDTLVGEHG-TQLSGGQKQRIA 532 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~---~~~~-~~~~~~~~~~~~~i~--~l~~g~~t~v~~~g-~~lSgGqkqri~ 532 (1198)
.++|++|+|.++.. |..+++.+..... ...+ .........+.+.++ .+|+++.+. .. ..||||||||++
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~~LS~G~~qrv~ 155 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTR---SVNVGFSGGEKKRND 155 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhccc---CCCCCCCHHHHHHHH
Confidence 79999999987753 5555543211100 0000 000000001112222 233333332 22 379999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhhH
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 607 (1198)
||||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. +|+|++|++|++++.|+++..
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999887754 6899999999999876 899999999999999988754
No 323
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.3e-36 Score=331.10 Aligned_cols=210 Identities=25% Similarity=0.436 Sum_probs=174.5
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|+++ .+|+|.++|.++.+.+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 46777774 17999999999999999999999999999999999985 48999999999988888888888999
Q ss_pred EcCCCC-CCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc---
Q 000984 465 VSQEPV-LFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK--- 539 (1198)
Q Consensus 465 v~Q~~~-l~~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~--- 539 (1198)
++|++. ++..|+++|+.++.+.. +.++.. ..+.+.++.+ |++.........||||||||++||||+++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 999985 45789999999864321 111111 1122334444 55555566778999999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 540 ----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 4789999999999775 599999999999999999988754
No 324
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.9e-36 Score=329.24 Aligned_cols=206 Identities=30% Similarity=0.452 Sum_probs=165.5
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCeEEECCeecCCcCHHHHhcceEEEcCCCC-CCc--
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFT-- 473 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~-l~~-- 473 (1198)
+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..+++++|++|+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 223468999999995 343
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc---chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeC
Q 000984 474 GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID---TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1198)
.|+.+|+.+.... ...++.. ..+.+.++.+ |++ +........||||||||++||||++++|++|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQAR-----ALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHH-----HHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5899998643211 1111110 0111223332 333 45667778999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 549 ATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 221 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHET 221 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHH
Confidence 9999999999999999988753 689999999999986 499999999999999999999976543333
No 325
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-36 Score=291.39 Aligned_cols=210 Identities=28% Similarity=0.418 Sum_probs=174.0
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH---HH
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1198)
-|++++++.+-+... ...+|++++|.|++||.++||||||||||||+..+.|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 377788887765432 24699999999999999999999999999999999999999999999999999988754 45
Q ss_pred h-cceEEEcCCCCCC-cccHHHHHhcCCCCCC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 459 R-KKIGLVSQEPVLF-TGSIKDNIAYGKDDAT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 459 r-~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
| +++|+|+|.-+|. +.|-.||+..+..-.. .+.... ..+.+..+ |+...+.....+||||++||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~------A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG------AKALLEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHH------HHHHHHHh--CcccccccCccccCchHHHHHHH
Confidence 5 6899999999877 6899999987543211 111111 11223333 66777777778999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1198)
|||+...|+||+-||||-+||.+|...|.+.+-.+- .+.|.|+|||+.....+|||++.|.+|++++
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999988875543 4689999999999999999999999999975
No 326
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-36 Score=294.06 Aligned_cols=219 Identities=32% Similarity=0.556 Sum_probs=182.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~---------- 452 (1198)
.++++|+..+|+. ..+|+++||+.++|+.+.|+|.|||||||++++|.=+-.|+.|+|.++|..++-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5889999999964 359999999999999999999999999999999999999999999999987641
Q ss_pred ---cCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 000984 453 ---FQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1198)
Q Consensus 453 ---~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~l 523 (1198)
-..+.+|.++++|+|+-.|.+ .||.||+.=+ |- ...+.++++. .++... |+..........|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae------~~L~kV--Gi~ek~~~YP~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAE------KYLAKV--GIAEKADAYPAHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHH------HHHHHh--CchhhhhcCcccc
Confidence 124567899999999998885 7999998732 21 1122232221 122222 5555555666789
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
||||+||++|||||..+|+++++|||||||||+-.-.+.+.++++. ++||.++|||.+.+.++ +.+|+.|.+|.|-|+
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 9999999999999999999999999999999998888888888765 58999999999999988 799999999999999
Q ss_pred cChhhHhcCCCc
Q 000984 602 GTHSKLVEDPEG 613 (1198)
Q Consensus 602 g~~~~l~~~~~~ 613 (1198)
|+|+++..++..
T Consensus 234 G~P~qvf~nP~S 245 (256)
T COG4598 234 GPPEQVFGNPQS 245 (256)
T ss_pred CChHHHhcCCCC
Confidence 999999987654
No 327
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.2e-36 Score=316.82 Aligned_cols=177 Identities=34% Similarity=0.592 Sum_probs=157.3
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 469999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEE
Q 000984 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 465 v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~il 544 (1198)
++| +++..++.++ +...+..||||||||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHL-----------ADRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 3444444433 33456789999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 000984 545 LLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1198)
||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988755 689999999999985 59999999999998654
No 328
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1e-35 Score=327.53 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=175.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEcCCCCCCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~---~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|+|.++. .|+++|+.+. +...++++..+++..++.+.+ ......||||||||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998764 4899998753 223455666666666554433 34456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
+|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++... ..+.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHH
Confidence 9999999999999999999999999988753 7899999999999865 999999965 79999999998653 3444
Q ss_pred HHH
Q 000984 617 QLI 619 (1198)
Q Consensus 617 ~~~ 619 (1198)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 443
No 329
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-36 Score=298.38 Aligned_cols=213 Identities=25% Similarity=0.477 Sum_probs=182.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+.+|++++-. ++.+|+++||+++|||.++|+||||+|||||+++|.|++.|.+|++.++|+++.++...++-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 78899998864 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCCC----C--HHH--HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 464 LVSQEPVL-FTGSIKDNIAYGKDDA----T--TEE--IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 464 ~v~Q~~~l-~~~ti~~Ni~~~~~~~----~--~~~--~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+.||+..+ |.-|++|-+.+|.-.. . +++ ..+++..+.+. ..-++.-..||||||||+.||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-----------~la~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-----------GLAGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-----------hhhccchhhcCchHHHHHHHH
Confidence 99999876 8999999999986322 1 122 33444444332 223455568999999999999
Q ss_pred Hhhcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhh
Q 000984 535 RAILK------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 535 Ral~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
|.|.+ ++++|+||||||+||....+.+.+..+++. ++..|+.|-|+++... .||||++|.+||++..|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 356899999999999999998888888875 4689999999999864 699999999999999999999
Q ss_pred HhcC
Q 000984 607 LVED 610 (1198)
Q Consensus 607 l~~~ 610 (1198)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8764
No 330
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.2e-35 Score=317.09 Aligned_cols=195 Identities=25% Similarity=0.374 Sum_probs=165.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 468999999963 46999999999999999999999999999999999999999999999999886543 46788999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|++|++.++ ..|++||+.+..+...++++.++++..++.+. ......+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999876 68999999876543445556666666555432 233456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEE
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVI 593 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 593 (1198)
++||||||++||+.+.+.+.+.++++. +++|+|++||+...+. .+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 4789999999877654 58998876
No 331
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.2e-36 Score=325.22 Aligned_cols=194 Identities=32% Similarity=0.478 Sum_probs=160.8
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHH
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNI 480 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni 480 (1198)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|++|+|.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999886 6999999
Q ss_pred hcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH
Q 000984 481 AYGK----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 481 ~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1198)
.++. +..++++..+ .+.+.++.+ |++.........||||||||++||||++++|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8742 1222222111 112233333 4554555667789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 557 SEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 557 ~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999988653 6899999999998765 999999999999998876655
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.4e-36 Score=306.12 Aligned_cols=159 Identities=33% Similarity=0.582 Sum_probs=147.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcce
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i 462 (1198)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 478999999963 369999999999999999999999999999999999999999999999999988775 4467789
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
++||||||++||+++.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 47899999999998765 99999999999875
No 333
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=369.11 Aligned_cols=228 Identities=27% Similarity=0.450 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC
Q 000984 383 DIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1198)
.++++|+++.|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 589999999996321 246899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhcceEEEcCCCC--CC-cccHHHHHhcCCC--C-CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCC
Q 000984 455 LQ---WIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD--D-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLS 524 (1198)
Q Consensus 455 ~~---~~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~--~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lS 524 (1198)
.. .+|++|+||+|+|. ++ ..||.+|+.++.. . ...++..+ .+.+.++.+ |++ .........||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~L~~~--gL~~~~~~~~~~~LS 465 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAA-----RVAWLLERV--GLLPEHAWRYPHEFS 465 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHH-----HHHHHHHHc--CCCHHHhhCCcccCC
Confidence 43 45778999999983 66 4699999976321 1 11211111 112233333 453 33456667899
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1198)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988753 6899999999999875 999999999999999
Q ss_pred cChhhHhcCCCchhHH
Q 000984 602 GTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 602 g~~~~l~~~~~~~~~~ 617 (1198)
|+++++..++...|.+
T Consensus 546 g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 546 GPRRAVFENPQHPYTR 561 (623)
T ss_pred cCHHHHhcCCCCHHHH
Confidence 9999998765555544
No 334
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=5.7e-36 Score=327.83 Aligned_cols=196 Identities=26% Similarity=0.440 Sum_probs=158.8
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc-CCCCCC-cccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QEPVLF-TGSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~-Q~~~l~-~~ti 476 (1198)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999886543 345678899997 666676 5799
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCC
Q 000984 477 KDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1198)
Q Consensus 477 ~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1198)
+||+.+... ..+.++..+.+ .+.++.+ |++.........||||||||++||||++.+|+++||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRL-----DELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999976421 12222222211 1122222 34333444556899999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 555 AESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 555 ~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999988753 6899999999998865 9999999999998765
No 335
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=320.17 Aligned_cols=227 Identities=30% Similarity=0.474 Sum_probs=187.1
Q ss_pred cccEEEEeEEEEcCCCCC--------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC
Q 000984 381 RGDIELRDVYFSYPARPN--------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~--------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1198)
..-++.+|+...||-+.+ ..+.+++||++++||.+||||.||||||||-.+|+|++++. |+|.++|.++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 345889999999975422 24789999999999999999999999999999999999776 999999999998
Q ss_pred cCHHH---HhcceEEEcCCCC-CC--cccHHHHHhcC----CCCCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 000984 453 FQLQW---IRKKIGLVSQEPV-LF--TGSIKDNIAYG----KDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1198)
Q Consensus 453 ~~~~~---~r~~i~~v~Q~~~-l~--~~ti~~Ni~~~----~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~ 518 (1198)
.+.+. +|+++-+|+|||+ -+ ..||.+-|.=| .|..+ ++++.++++.++++.. -..+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~----------~r~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPA----------TRNR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChh----------Hhhc
Confidence 87655 5789999999996 22 35776666533 23333 3445555555544332 2356
Q ss_pred CCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeC
Q 000984 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1198)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1198)
....+|||||||||||||+.-+|++++|||||||||.-...+|.+.++++-+ +-+-++|+|++..++. ||+|+||++
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 6788999999999999999999999999999999999999999999887643 5688999999999986 999999999
Q ss_pred CEEEEecChhhHhcCCCchhHHH
Q 000984 596 GKIVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 596 G~i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
|+|+|+|+.+++.+++...|.+-
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHHH
Confidence 99999999999999888777654
No 336
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-35 Score=316.19 Aligned_cols=194 Identities=22% Similarity=0.369 Sum_probs=161.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999998865 3456788999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|++|++.++ ..|+++|+.++... ..+.++. +.++.+ |+.........+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGIT---------ELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHH---------HHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 57999999975311 1122222 333333 2222334445679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEE
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~ 592 (1198)
++|||||||++||+.+...+.+.|+++. +++|+|++||+.+.+..||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999998864 47899999999999999997543
No 337
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=291.56 Aligned_cols=210 Identities=29% Similarity=0.481 Sum_probs=169.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+..++++.+|+..+ .++|+|+|++|.+||+++++||||||||||++++.|+++|..|+|.+||..|..-+. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56788999998654 569999999999999999999999999999999999999999999999988765443 358
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+|+|++-|+. -|+.||+.||..-.. +.++.+....++.+... |++-.=......||||||||+.|||||..+|+
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~G---i~k~~R~~~a~q~l~~V--gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHh--CcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 9999998886 699999999854221 11111111122222222 33322244567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhh-ccCEEEEEe--CCEEEEecCh
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTH 604 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 604 (1198)
.|+||||++|||+-|.+.+|+.+.++. .++.+++|||+++..- -+++++||. .|+|++.=++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999998765 4789999999999765 499999997 5799876543
No 338
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-35 Score=316.03 Aligned_cols=195 Identities=22% Similarity=0.333 Sum_probs=164.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999987654 45677899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|++|++.++. .|++||+.++.+. ..++++.++++..++.+ ........||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG-----------FEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH-----------HhhCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998875 6999999875422 22344444555544432 3344567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEE
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVI 593 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 593 (1198)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 46899999999999965 5677776
No 339
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=8.3e-33 Score=312.23 Aligned_cols=417 Identities=16% Similarity=0.226 Sum_probs=258.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 165 GRMSGDTVLIQDAMGEKVGKFLQLMATFLGG-FLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAA 243 (1198)
Q Consensus 165 ~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~-~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1198)
.|++.|+++.-..+.+.....+...+.++-. +.+.-..+|+-...++..+.+-.++...+.+.+.+...+.++...+..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 5888999988777664444443333332222 222223344332223222222233334444444555555555555555
Q ss_pred HHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHhCC
Q 000984 244 SVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG---VQEGLAAGIGLGMV-MLIVFCSYALS--VWYGGKLILEEG 317 (1198)
Q Consensus 244 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~g~~l~~~~~ 317 (1198)
-.-++...|...|..|+.++.+........+...... +...++.++....+ .+..++.++++ -++.++ .-..
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h--~y~~ 343 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH--VYDD 343 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc--ccCC
Confidence 5555667788889999888766655444333322222 11222222221111 11111111110 001111 1123
Q ss_pred CCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCC----------CCCccC-------CC
Q 000984 318 YNGGQVVNVM----VAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN---RKP----------EIDAYD-------TK 373 (1198)
Q Consensus 318 ~~~~~~~~~~----~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~----------~~~~~~-------~~ 373 (1198)
+++..+...+ +.++.....++.+.-....+.+-..-..|+-++.+ ... ++..+. ..
T Consensus 344 ~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G 423 (659)
T KOG0060|consen 344 LSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPG 423 (659)
T ss_pred cCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCC
Confidence 4444443322 11111122222222222222222223344443322 110 000000 00
Q ss_pred CcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc
Q 000984 374 GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF 453 (1198)
Q Consensus 374 ~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~ 453 (1198)
.....+.+..|++++|++.-|++ +..+.+|+||+|+.|+.+.|+||||||||+|+++|.|+.+..+|++.-....-
T Consensus 424 ~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--- 499 (659)
T KOG0060|consen 424 SGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--- 499 (659)
T ss_pred CcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC---
Confidence 01112334679999999998875 45677889999999999999999999999999999999999999997644210
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhc-CCCCCCCh
Q 000984 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-------DDATTEEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSG 525 (1198)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~-~~g~~lSg 525 (1198)
-+.+-|+||.|.+-.||+||-+.++. ...+++++.+.++.+++.+.++.. +|+|+++. +-...||+
T Consensus 500 -----~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~ 573 (659)
T KOG0060|consen 500 -----PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSP 573 (659)
T ss_pred -----CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCH
Confidence 03599999999999999999999872 235789999999999998866654 68887664 45678999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
||+||+|.||-+|++|++-+|||+|||||.+.|..+.+.+++. +-|.|.|.||.+..+.-|.++.|+.
T Consensus 574 GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 574 GEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999999999999999999999999999999888875 7899999999999999999999986
No 340
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.1e-35 Score=359.17 Aligned_cols=221 Identities=28% Similarity=0.486 Sum_probs=180.7
Q ss_pred cEEEEeEEEEcCCC--------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC
Q 000984 383 DIELRDVYFSYPAR--------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1198)
.|+++|+++.|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|++ |.+|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1246999999999999999999999999999999999998 58999999999987765
Q ss_pred HHH---HhcceEEEcCCC--CCCc-ccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCC
Q 000984 455 LQW---IRKKIGLVSQEP--VLFT-GSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQL 523 (1198)
Q Consensus 455 ~~~---~r~~i~~v~Q~~--~l~~-~ti~~Ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~l 523 (1198)
... +|++++|++|+| .++. .|++||+.++... .+..+.. ..+.+.++.+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHHHHc--CCCHHHHhcCCccC
Confidence 443 467899999998 3664 6999999874210 1111111 1122334444 554 2356667889
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 6899999999998865 99999999999999
Q ss_pred ecChhhHhcCC
Q 000984 601 KGTHSKLVEDP 611 (1198)
Q Consensus 601 ~g~~~~l~~~~ 611 (1198)
.|+++++.+.+
T Consensus 507 ~~~~~~~~~~~ 517 (529)
T PRK15134 507 QGDCERVFAAP 517 (529)
T ss_pred EcCHHHHhcCC
Confidence 99999987653
No 341
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=310.00 Aligned_cols=197 Identities=32% Similarity=0.518 Sum_probs=168.1
Q ss_pred cEEEEeEEEEcCCCCC------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH
Q 000984 383 DIELRDVYFSYPARPN------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1198)
-++++|++..|+.... ..+++||||+|++||.++|||.|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3788999999975421 36899999999999999999999999999999999999999999999998876555
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
.....+++.+.++.+++.++ ........||||||||++||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHH
Confidence 11123456666666554332 2355567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCc
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1198)
|.-+|+++++|||+|+||.-...++.+.+.++. .+-|.++|||+++.++. ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999887764 36899999999999987 999999999999999999999998888
Q ss_pred hhHHHH
Q 000984 614 AYSQLI 619 (1198)
Q Consensus 614 ~~~~~~ 619 (1198)
.|.+..
T Consensus 204 pYTk~L 209 (268)
T COG4608 204 PYTKAL 209 (268)
T ss_pred HHHHHH
Confidence 887654
No 342
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.6e-35 Score=313.37 Aligned_cols=196 Identities=20% Similarity=0.297 Sum_probs=162.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ +++++++||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 3599999999999999999999999999999999999999999999999988652 345679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKDD--AT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|+|.++.+ |++||+.++... .. ++...+.++.. |+..........||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV-----------GLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc-----------CChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 999999988875 999999764221 11 12222222222 3333344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1198)
++|+++||||||++||+++.+.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998764 46899999999998865 899999864
No 343
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.6e-35 Score=311.55 Aligned_cols=193 Identities=23% Similarity=0.324 Sum_probs=159.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 478999999963 46999999999999999999999999999999999999999999999999987765 45678899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVLFT-GSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l~~-~ti~~Ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
|++|++.++. .|+++|+.+...... ++++.++++..++.+. ......+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-----------EDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH-----------hcCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998885 799999986432111 2334555555544433 3344568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEE
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~ 592 (1198)
|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+...+. +++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 99999999999999999999999998863 5789999999985443 365543
No 344
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=292.08 Aligned_cols=221 Identities=26% Similarity=0.463 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++||+.+|.+ +.+++++|++|++|.+++|+||+|+|||||+..+.|++++++|+|.+||.++.+.+.++|.++++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999963 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+.-|+.++- .-||||=+.||+-.++..+...-++ ..+.+.++-| .+...-++.-..||||||||.-+|..++++.+
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~-~~I~~aieyl--~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR-RIINEAIEYL--HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHH-HHHHHHHHHh--cccchHHHhHHhcccchhhhhhhheeeeccCc
Confidence 999999876 5799999999974444221111100 0111112222 23333344445799999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
-++||||+.+||......+.+.++++.. +||+++|-|+.++... +|+|+-|++|+++.+|+|+|+++.
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 9999999999999988888777776543 7999999999999875 899999999999999999999874
No 345
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-34 Score=311.41 Aligned_cols=195 Identities=24% Similarity=0.351 Sum_probs=162.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|+++.|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. .|+++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEAC 75 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhc
Confidence 3789999999963 359999999999999999999999999999999999999999999999998752 22 78899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|++|++.++ ..|+++|+.+... ...++++.++++..++.+ ........||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhc
Confidence 9999988765 6899999976422 122344555555555433 2233345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. |+++.++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999998753 57899999999999988 99988854
No 346
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.4e-35 Score=365.36 Aligned_cols=203 Identities=24% Similarity=0.385 Sum_probs=171.8
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~- 473 (1198)
++++|+|+|+++++||.++|+||+|||||||+++|.|..+|. +|+|.+||.++. ...+|+.++||+|+++++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999998874 799999999875 3567889999999999995
Q ss_pred ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC--CCCCChHHHHHHhHHHhhccCCCEE
Q 000984 474 GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH--GTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~v~~~--g~~lSgGqkqri~lARal~~~~~il 544 (1198)
.||+|||.|+... .+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 6999999875321 122211 1122333443 345678999984 4789999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcc-h-hhccCEEEEEeCCEEEEecChhhHh
Q 000984 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-T-VRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+||||||+||+.+...+.+.++++. +++|+|+++|+++ . ...+|++++|++|+++++|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 9999999999999999999998875 4799999999996 3 5679999999999999999999885
No 347
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=320.18 Aligned_cols=208 Identities=24% Similarity=0.344 Sum_probs=169.2
Q ss_pred cEEEEeEEEEcCCC-----------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 383 DIELRDVYFSYPAR-----------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-----------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
.|+++|++.+|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46777777766431 1246899999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
+| .+++++|++.++. .|+++|+.++. ...+.++...... +.+..+ |++..+......
T Consensus 84 ~g-------------~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NG-------------EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP-----KIIEFS--ELGEFIYQPVKK 143 (264)
T ss_pred CC-------------EEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhcCCccc
Confidence 98 3678889887764 69999997632 1223333322211 111111 444555667789
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
||||||||++||||++++|++|||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988888764 47899999999998865 99999999999999
Q ss_pred ecChhhHhcC
Q 000984 601 KGTHSKLVED 610 (1198)
Q Consensus 601 ~g~~~~l~~~ 610 (1198)
.|+++++.+.
T Consensus 224 ~g~~~~~~~~ 233 (264)
T PRK13546 224 YGELDDVLPK 233 (264)
T ss_pred eCCHHHHHHH
Confidence 9999998875
No 348
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-35 Score=276.67 Aligned_cols=219 Identities=28% Similarity=0.469 Sum_probs=177.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe--ecCCc----CHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEF----QLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~--~~~~~----~~~ 456 (1198)
.|+++|++|.|+. ..+|.||+|+.+.||.+.+.||||+|||||++.|.=+--|.+|+..|.|. |.++. ...
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4889999999974 35999999999999999999999999999999999888899999999774 34333 346
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCCC----CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD----ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~----~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
++|+.+|+|+|.-+|.. .||-||+.= .|- .+++ +..+.++..++.++-+ +-...|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlie-ap~kv~gl~~~qa~~~a~ellkrlrl~~~ad-----------r~plhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIE-APCRVLGLSKDQALARAEKLLKRLRLKPYAD-----------RYPLHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHh-hhHHHhCCCHHHHHHHHHHHHHHhccccccc-----------cCceecccch
Confidence 78999999999999884 799999973 221 1122 2223333333333333 3346799999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
+||+||||||..+|++|++||||++|||+-...+.+.|+++.. +-|-++|||..+..+. |.+|+.|++|+|+|.|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999988888899998764 6799999999999876 9999999999999999988
Q ss_pred hHhcCCCchhH
Q 000984 606 KLVEDPEGAYS 616 (1198)
Q Consensus 606 ~l~~~~~~~~~ 616 (1198)
..-+.....|.
T Consensus 227 ~ft~p~te~f~ 237 (242)
T COG4161 227 CFTEPQTEAFK 237 (242)
T ss_pred hccCccHHHHH
Confidence 76544333333
No 349
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.3e-34 Score=357.80 Aligned_cols=202 Identities=28% Similarity=0.450 Sum_probs=168.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--CCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-cc
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GS 475 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~--~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~t 475 (1198)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++.. ..+++++||+|++.++. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 56999999999999999999999999999999999999885 8999999998742 34567999999999985 69
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC-CCCCChHHHHHHhHHHhhccCCCEEEEe
Q 000984 476 IKDNIAYGK----D-DATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH-GTQLSGGQKQRIAIARAILKDPRILLLD 547 (1198)
Q Consensus 476 i~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~v~~~-g~~lSgGqkqri~lARal~~~~~illlD 547 (1198)
|+||+.+.. + ..++++..+. +++.++. +++..+|.+|+. ...||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998742 1 1233322211 1223333 333447888754 6789999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch-h-hccCEEEEEeCCEEEEecChhhHhc
Q 000984 548 EATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST-V-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|||++||+.+...+.+.++++. +++|+|+++|+++. + ..+|+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998875 57999999999984 4 5699999999999999999999853
No 350
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-34 Score=333.01 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=167.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999764445799999999999999999999999999999999999999999999999641
Q ss_pred EEEcCCCCCC-cccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
++.+.+.++ ..|++||+.++. ...+.++..+.+ .+.++.+ |++.........||||||||++|||||+.
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i-----~elLe~l--gL~~~ld~~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII-----PEIIEFA--DIGKFIYQPVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH-----HHHHHHc--CChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence 223344444 359999998632 122333322211 1112222 34444555677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999999999998764 46899999999998865 999999999999999999998764
No 351
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.6e-34 Score=314.62 Aligned_cols=203 Identities=29% Similarity=0.395 Sum_probs=160.4
Q ss_pred EEEEeEEEEcCCC---C-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC--Ce--ecCCcCH
Q 000984 384 IELRDVYFSYPAR---P-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GI--NLKEFQL 455 (1198)
Q Consensus 384 i~~~~v~~~y~~~---~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~--g~--~~~~~~~ 455 (1198)
|+++|++++|+.. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2469999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHH
Q 000984 456 QW---I-RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQ 527 (1198)
Q Consensus 456 ~~---~-r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGq 527 (1198)
.. + +++++|++|+|.++. .|++||+.++.. ....++..+ .+.+.++.+ |+... ....+.+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 3 457999999998875 599999975321 112221111 112233333 33322 244577899999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEE
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVI 593 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 593 (1198)
|||++||||++++|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+. .||+|+.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999998875 4789999999999886 59999876
No 352
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-35 Score=301.05 Aligned_cols=197 Identities=29% Similarity=0.487 Sum_probs=170.0
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC----CcCHHHHhcceEEEcCCCCCC-cccHHH
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK----EFQLQWIRKKIGLVSQEPVLF-TGSIKD 478 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~----~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ 478 (1198)
+++|+.+.-..+||-|+||||||||+++|.|+..|++|.|.+||.-+. .+.+.--+++||||+||..|| .-|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 577888776899999999999999999999999999999999997764 344455578999999999999 589999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1198)
|+.||....+.++...++.+-++...+ .+....||||+|||+||+|||+.+|++|+||||+|+||....
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL-----------~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLL-----------DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHH-----------hhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998766666777776666555544 455578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 559 KVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 559 ~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
+.+.-.++++.+ +--++.|||.++.+.+ ||+|++|++|++...|..++..+.+
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 988888877764 4678999999998755 9999999999999999999998763
No 353
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-34 Score=353.45 Aligned_cols=220 Identities=28% Similarity=0.470 Sum_probs=176.4
Q ss_pred cEEEEeEEEEcCC--CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC-Cee---cCCcC--
Q 000984 383 DIELRDVYFSYPA--RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-GIN---LKEFQ-- 454 (1198)
Q Consensus 383 ~i~~~~v~~~y~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~-g~~---~~~~~-- 454 (1198)
.++++|++++|+. +...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 122469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccc-----hhcCCCCCCChH
Q 000984 455 -LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDT-----LVGEHGTQLSGG 526 (1198)
Q Consensus 455 -~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-----~v~~~g~~lSgG 526 (1198)
...+|++++|++|++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |+.. ........||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV--GFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence 2345678999999998876 599999986321 11111111 1112333333 3432 345667789999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988753 6899999999999865 99999999999999999
Q ss_pred hhhHhc
Q 000984 604 HSKLVE 609 (1198)
Q Consensus 604 ~~~l~~ 609 (1198)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 988754
No 354
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=352.30 Aligned_cols=218 Identities=23% Similarity=0.374 Sum_probs=177.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCeEEECCeecCCcCH-HHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQL-QWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~g~~~~~~~~-~~~r~ 460 (1198)
.|+++|+++.|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+. +..+.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999953223469999999999999999999999999999999999998 599999999999865443 44577
Q ss_pred ceEEEcCCC---CCC-cccHHHHHhcCCC-CC------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHH
Q 000984 461 KIGLVSQEP---VLF-TGSIKDNIAYGKD-DA------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~---~l~-~~ti~~Ni~~~~~-~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqk 528 (1198)
+++|++|+| .++ ..|+.||+.++.. .. +.++. ...+.+.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 4699999987531 00 11111 11233445555 4532 34566778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..|++++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998764 47899999999998865 99999999999999998876
Q ss_pred H
Q 000984 607 L 607 (1198)
Q Consensus 607 l 607 (1198)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 5
No 355
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=357.37 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH---
Q 000984 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI--- 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~--- 458 (1198)
.++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996422 2469999999999999999999999999999999999999999999999999998876654
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|+.++|++|+|.+|. .|+.||+.++... ...++. .....+.++.+ |++..+.....+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR-----LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 578999999999996 5999999864211 111111 11223445555 677777777889999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHh
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
||++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||++++|++|++++.|+.++..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 478999999999998889999999999999999999875
No 356
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.2e-34 Score=312.39 Aligned_cols=186 Identities=26% Similarity=0.462 Sum_probs=155.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCC---CcccHHHHHhcC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIAYG 483 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l---~~~ti~~Ni~~~ 483 (1198)
|++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++. ..+++++|++|+|.+ ++.|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999976 457999999875
Q ss_pred CCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCC
Q 000984 484 KDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1198)
Q Consensus 484 ~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1198)
... .. ++++.++++..+ ++.........||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVG-----------LTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhC-----------CchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 11 122333344333 333344555679999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 9999999999998875 47899999999998865 9999999 799999999998865
No 357
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.1e-34 Score=312.58 Aligned_cols=197 Identities=24% Similarity=0.330 Sum_probs=154.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+.++|++.+|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 567788888853 4699999999999999999999999999999999999999999999999875311
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 464 LVSQEPVL-FTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 464 ~v~Q~~~l-~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
.+.+.+ .+.|++||+.++... .+.++..+. ..+.++.+ |++.........||||||||++||||++++
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK-----IDEIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111222 357999999865321 122222111 11112222 344444455568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999987654 5899999999998864 9999999999998765
No 358
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.5e-34 Score=306.25 Aligned_cols=174 Identities=34% Similarity=0.539 Sum_probs=144.3
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC--cCHHHHhcceEEEcCCC--CCCcc
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKKIGLVSQEP--VLFTG 474 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~i~~v~Q~~--~l~~~ 474 (1198)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++++++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999998852 23446678899999998 47888
Q ss_pred cHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeC
Q 000984 475 SIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1198)
Q Consensus 475 ti~~Ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1198)
|++||+.++.. ..+.+ ++.++++.. |++.........||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAV-----------GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 12222 223333333 34444455567899999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch
Q 000984 549 ATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST 583 (1198)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~ 583 (1198)
||++||+.+.+.+.+.|+++. +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998875 46899999999874
No 359
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-34 Score=304.89 Aligned_cols=189 Identities=20% Similarity=0.359 Sum_probs=157.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999953 3355 599999999999999999999999999999999999999999999886543 34699
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 464 LVSQEPVL-FTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 464 ~v~Q~~~l-~~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|++|++.+ +..|++||+.++.... ..+++..+++..++ +......+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKL-----------HDLLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCC-----------HhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999855 6789999998754322 23344444444443 33345567789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHH-hCCCeEEEEecCcchhhccCEEE
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIA 591 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~~d~i~ 591 (1198)
+++||||||++||+.+.+.+.+.++.. .+++|+|++||+++.++.+|.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999998754 35799999999999999999763
No 360
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-32 Score=362.02 Aligned_cols=220 Identities=19% Similarity=0.342 Sum_probs=184.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|++. .+.+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+ +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 459999999999642 2569999999999999999999999999999999999999999999999999865 45567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
||||||++.++. .|++||+.+... ....++..+.. .+.++.+ |++.........||||||||++|||||+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v-----~~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVA-----NWSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999998885 699999976311 11222222111 1223333 4554556666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
.+|+|++|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999998864 57899999999999875 999999999999999999998654
No 361
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.1e-34 Score=345.53 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=174.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEEECCeecCCcC-HHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQ-LQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~~~-~~~~r~ 460 (1198)
.|+++|++++|+...+..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ...+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999998432224699999999999999999999999999999999999985 8999999999986543 356678
Q ss_pred ceEEEcCCC---CCCc-ccHHHHHhcCCCC-C------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHH
Q 000984 461 KIGLVSQEP---VLFT-GSIKDNIAYGKDD-A------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1198)
Q Consensus 461 ~i~~v~Q~~---~l~~-~ti~~Ni~~~~~~-~------~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqk 528 (1198)
+++|++|++ .++. .|+++|+.++... . ...+. ...+.+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 999999996 3664 6999999875310 0 11111 11223344444 4432 24555678999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||++||||++.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999888764 47899999999998865 99999999999997765443
No 362
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=344.33 Aligned_cols=210 Identities=20% Similarity=0.336 Sum_probs=172.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 28999999999999999999999999999999999999999999999998866543 456778
Q ss_pred eEEEcCCC---CCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCCh
Q 000984 462 IGLVSQEP---VLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1198)
Q Consensus 462 i~~v~Q~~---~l~~-~ti~~Ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSg 525 (1198)
++|++|++ .++. .|+++|+.++.... ...+. ...+.+.++.+ |+. .........|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 4664 59999998753210 11111 11123344444 453 345666678999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 47899999999998764 99999999999998876
Q ss_pred h
Q 000984 604 H 604 (1198)
Q Consensus 604 ~ 604 (1198)
.
T Consensus 493 ~ 493 (510)
T PRK09700 493 N 493 (510)
T ss_pred C
Confidence 5
No 363
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.3e-33 Score=322.36 Aligned_cols=190 Identities=33% Similarity=0.558 Sum_probs=156.6
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHH
Q 000984 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIR 493 (1198)
Q Consensus 417 ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~ 493 (1198)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|++|++.+|. .|+++|+.|+... .+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999877654 3678999999999996 5999999986421 1222211
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--C
Q 000984 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--N 571 (1198)
Q Consensus 494 ~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~ 571 (1198)
+ .+.+.++.+ |++........+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ +
T Consensus 79 ~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 79 P-----RVLEALRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred H-----HHHHHHHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 112223333 455555666778999999999999999999999999999999999999999999988753 6
Q ss_pred CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 572 ~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...+
T Consensus 152 ~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 899999999998765 99999999999999999999987654333
No 364
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=342.71 Aligned_cols=210 Identities=21% Similarity=0.349 Sum_probs=173.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.|+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999973 27999999999999999999999999999999999999999999999999876654 346778
Q ss_pred eEEEcCCC---CCC-cccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 000984 462 IGLVSQEP---VLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1198)
Q Consensus 462 i~~v~Q~~---~l~-~~ti~~Ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqk 528 (1198)
++|+||+| .++ ..|+++|+.++... .+.++. ...+.+.++.+ |+. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 355 47999999874210 011111 11223444444 453 345667778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|++++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998875 47899999999998865 99999999999999998766
Q ss_pred H
Q 000984 607 L 607 (1198)
Q Consensus 607 l 607 (1198)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 4
No 365
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.9e-33 Score=305.57 Aligned_cols=193 Identities=24% Similarity=0.408 Sum_probs=156.1
Q ss_pred EEcCCCCCCccccceeEEEe-----CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 391 FSYPARPNEQIFSGFSISIS-----SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 391 ~~y~~~~~~~~l~~i~l~i~-----~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
|+||.. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 568642 458899999887 69999999999999999999999999999999999984 69999
Q ss_pred cCCCC-CCcccHHHHHhcCCCCC-C-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 466 SQEPV-LFTGSIKDNIAYGKDDA-T-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 466 ~Q~~~-l~~~ti~~Ni~~~~~~~-~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+|++. .+..|++||+.+..... . .....+++ +.+ |++.........||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l---------~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIA---------KPL--QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHH---------HHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99997 46899999997543211 1 11122222 222 45545566677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEE--EecChhhHh
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKGTHSKLV 608 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g~~~~l~ 608 (1198)
++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+++..+ ..++|.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999999999999999988753 7899999999999875 9999999775443 455666554
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.2e-33 Score=372.72 Aligned_cols=213 Identities=22% Similarity=0.417 Sum_probs=179.1
Q ss_pred cEEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCeEEECCeecCCcCHHHH
Q 000984 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
.++++|++++|+.+ .++++|+|+|+++++||+++|+||||||||||+++|.|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47899999999632 23579999999999999999999999999999999999997 68899999999874 257
Q ss_pred hcceEEEcCCCC-CCcccHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 459 RKKIGLVSQEPV-LFTGSIKDNIAYGK----D-DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 459 r~~i~~v~Q~~~-l~~~ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
|++++||+|++. ++..|||||+.|+. | ..++++ +.++++..++ .+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 889999999875 45789999999742 1 123322 3344444333 33468889988889999999
Q ss_pred HHHhHHHhhccCCC-EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchh--hccCEEEEEeCC-EEEEecC
Q 000984 529 QRIAIARAILKDPR-ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV--RNADMIAVIHRG-KIVEKGT 603 (1198)
Q Consensus 529 qri~lARal~~~~~-illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~--~~~d~i~~l~~G-~i~~~g~ 603 (1198)
||++|||||+.+|+ ||+||||||+||+.+...+.+.++++. +++|+|+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999998874 579999999999963 579999999987 9999999
Q ss_pred hhh
Q 000984 604 HSK 606 (1198)
Q Consensus 604 ~~~ 606 (1198)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 754
No 367
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-33 Score=340.40 Aligned_cols=212 Identities=24% Similarity=0.349 Sum_probs=173.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC-HHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~~ 461 (1198)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .+..|++
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999732 3899999999999999999999999999999999999999999999999886543 3455788
Q ss_pred eEEEcCCCC---CC-cccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 000984 462 IGLVSQEPV---LF-TGSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1198)
Q Consensus 462 i~~v~Q~~~---l~-~~ti~~Ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqk 528 (1198)
++|++|+|. +| ..|+.||+.++.... ...+.. ..+.+.+..+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 55 579999998753211 111111 1123344444 442 334566678999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1198)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999999988754 7899999999998865 99999999999999998876
Q ss_pred Hh
Q 000984 607 LV 608 (1198)
Q Consensus 607 l~ 608 (1198)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 54
No 368
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-30 Score=277.21 Aligned_cols=405 Identities=21% Similarity=0.225 Sum_probs=296.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 000984 766 IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIV 845 (1198)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i 845 (1198)
.++++.++..+.+.+........+.+...++|.++.++++..|+.-++ +-.+++++.++++|+..|. +-...++.+.
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp~~~ 129 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhHHHH
Confidence 344444455556667778888999999999999999999999999999 5889999999999999998 5556778899
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHH-
Q 000984 846 QNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV- 924 (1198)
Q Consensus 846 ~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~- 924 (1198)
++...+++++.++++.++++.+++++++.+..+..++.+.+.-+..+..++...++.+..+..++|-+..+......+.
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 9999999999999999999999999999999999999888888888899999999999999999999998876533222
Q ss_pred -HHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000984 925 -MQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFS 1003 (1198)
Q Consensus 925 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~ 1003 (1198)
.+.|....+...+...+..........+.+++....+.+++|+..... .-+......+.+.+.+.-.|+.++....
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~vgil 286 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAVGIL 286 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHHhhh
Confidence 122222222222211111111112223333444444444545443322 2233344445556667788999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCC
Q 000984 1004 SDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSG 1083 (1198)
Q Consensus 1004 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSG 1083 (1198)
+.+..+.++.+++.++-..|+..+-.. +.+.+..+ .||++||.|+|++. ..-+.-||++|+.||.|=|+|.+|||
T Consensus 287 P~l~~AqvA~~kiakle~~~~~a~~~~--~q~~p~~~-~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYKADFPR--PQAFPDWK-TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCccccCCC--CCcCCccc-ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCc
Confidence 999999999999998765433221111 11122233 59999999999743 24588999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHH
Q 000984 1084 KSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163 (1198)
Q Consensus 1084 KSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~d 1163 (1198)
|||+++||.|+|.|++|+|++||.+++.=++++.|+-+|-|+-|-+||+.++ |+...++.+.+..-++.-.+..
T Consensus 362 KST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999865 5443377776655444333222
Q ss_pred HH---------HhccccccceeeeeeccccccCC
Q 000984 1164 FI---------CSLQQVRTSRLLLVMIPWLESED 1188 (1198)
Q Consensus 1164 fI---------~~LP~g~dt~v~~~~~~~~~~~~ 1188 (1198)
.. -+|.-|-.-++|+. +.|||..|
T Consensus 436 ktsl~d~~fs~~kLStGQkKRlAll-~AllEeR~ 468 (546)
T COG4615 436 KTSLNDGRFSNLKLSTGQKKRLALL-LALLEERD 468 (546)
T ss_pred hhcccCCcccccccccchHHHHHHH-HHHHhhCC
Confidence 22 23444555555554 44666544
No 369
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=5.8e-33 Score=278.76 Aligned_cols=143 Identities=38% Similarity=0.598 Sum_probs=133.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++++|++++|++ .++|+++||++++||.++|+||||||||||+++|.|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 468999999964 35999999999999999999999999999999999999999999999994 4799
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
|++| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
+||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 5799999999999865 89999999985
No 370
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=337.62 Aligned_cols=201 Identities=21% Similarity=0.366 Sum_probs=168.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +.++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 5999999999963 3599999999999999999999999999999999999999999999988 3479
Q ss_pred EEEcCCCC--CC-cccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhh
Q 000984 463 GLVSQEPV--LF-TGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 463 ~~v~Q~~~--l~-~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|++|++. ++ ..|+++|+.+.. ....++++...++.. |+. ........+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL-----------LFSQDDIKKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc-----------CCChhHhcCcccccCHHHHHHHHHHHHH
Confidence 99999984 44 369999997422 112233344444333 332 234566778999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhHhcC
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLVED 610 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 610 (1198)
+.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. ||+|++|++|+++ +.|+++++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999876 4699999999999875 9999999999998 78998887654
No 371
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.6e-33 Score=304.80 Aligned_cols=201 Identities=22% Similarity=0.357 Sum_probs=158.1
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE-----------ECCeecCCcCH
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-----------i~g~~~~~~~~ 455 (1198)
.|++++|+.. ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4788999632 359999994 999999999999999999999999999999999996 78888876543
Q ss_pred HHHhc--ceEEEcCCCCCCcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHh
Q 000984 456 QWIRK--KIGLVSQEPVLFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1198)
Q Consensus 456 ~~~r~--~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~ 532 (1198)
...|. .++|++|++.++..++.+|+.+...... .++.. +.++.+ |++........+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLD---------ELVDQL--ELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHH---------HHHHHc--CCchhhcCChhhCCHHHHHHHH
Confidence 33332 4789999887776566666553211111 12222 233333 5555667777899999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 000984 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1198)
||||++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999988754 6899999999999885 99999995 5565433
No 372
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-32 Score=335.52 Aligned_cols=211 Identities=18% Similarity=0.347 Sum_probs=173.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-Hhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1198)
.|+++|++. .+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|.+
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999983 1699999999999999999999999999999999999999999999999988776554 4568
Q ss_pred eEEEcCCC---CCCc-ccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 000984 462 IGLVSQEP---VLFT-GSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 462 i~~v~Q~~---~l~~-~ti~~Ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri 531 (1198)
++|+||++ .+|. .|+.+|+.... .. ....+.+ ..+.+.++.+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 3564 59999986321 10 0111111 1123445554 554 345666778999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999998875 47899999999999875 9999999999999999887664
No 373
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-32 Score=275.64 Aligned_cols=202 Identities=28% Similarity=0.476 Sum_probs=171.9
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCC--CC-cc
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LF-TG 474 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~--l~-~~ 474 (1198)
++++|+++||+|+.|+++-|+|.||||||||+++|.|.+.|++|+|.|||+|+..++.+.....++-|+|||- .| +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4689999999999999999999999999999999999999999999999999999999988889999999994 34 57
Q ss_pred cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCC
Q 000984 475 SIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1198)
Q Consensus 475 ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1198)
||.||+.+.... .+. -...-+.....+.+..+|.|++..++.+..-|||||||-++|+.|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~--~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSS--ALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccch--hhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999875321 111 1111122333456888999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchh-hccCEEEEEeCCEEEEe
Q 000984 550 TSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~ 601 (1198)
|+||||.+...+.+.-.+.- .+-|.++|||+++.. ..-+|.++|++|+|+-+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999888776655442 246999999999875 55799999999999864
No 374
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.6e-32 Score=293.40 Aligned_cols=185 Identities=17% Similarity=0.245 Sum_probs=149.5
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE-ECCeecCCcCHHHHhcceEEEcCCCCCCcc-cHHH
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKD 478 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ 478 (1198)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777432 23467778864 9999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH
Q 000984 479 NIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 479 Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1198)
|+.+... ..+.++....+. ....+++..++ ....||||||||++||||++.+|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTD----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhc----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9986422 122333222111 11223333333 34569999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHh
Q 000984 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 557 ~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-++..
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 99999988866666789999999999986 59999999999999999887764
No 375
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=3e-32 Score=263.91 Aligned_cols=218 Identities=25% Similarity=0.456 Sum_probs=171.4
Q ss_pred EEEEeEEEEcCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH
Q 000984 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 384 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
++++|++.++..+ ....+.+.+||+++.|+.+||+|.+|||||||.++|.|.++|++|+|.+||+++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4556666544322 1234789999999999999999999999999999999999999999999999887666666
Q ss_pred HhcceEEEcCCCC-CCc----------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 458 IRKKIGLVSQEPV-LFT----------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~-l~~----------~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
..++|-.++|||. -|| +.++-|-.+ .+....+++.+.++.+++ +|+--+. ....||.|
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~~ 153 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAPG 153 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccC-ChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCch
Confidence 5678999999994 233 222222221 122344566667776665 3432222 23579999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
||||+||||||.-+|+|+|.||+.++||.....++.+...++. .|-.-|.|+.++..+++ +|+|+||+.|+++|.|+
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999998888877765543 36788999999999998 99999999999999999
Q ss_pred hhhHhcCCC
Q 000984 604 HSKLVEDPE 612 (1198)
Q Consensus 604 ~~~l~~~~~ 612 (1198)
+.++++.+.
T Consensus 234 t~~v~a~P~ 242 (267)
T COG4167 234 TADVLASPL 242 (267)
T ss_pred hhhhhcCCc
Confidence 999998754
No 376
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7e-32 Score=327.94 Aligned_cols=211 Identities=19% Similarity=0.336 Sum_probs=169.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH-HHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 461 (1198)
.|+++|+++.| +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999874 2499999999999999999999999999999999999999999999999999776543 45778
Q ss_pred eEEEcCCCC---CCc-ccHHHH-----HhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 000984 462 IGLVSQEPV---LFT-GSIKDN-----IAYGKDD---ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1198)
Q Consensus 462 i~~v~Q~~~---l~~-~ti~~N-----i~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqk 528 (1198)
++|+||++. +|. .|+.+| +.+.... .+..+.. ..+.+.++.+ |+. -.......+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 554 577666 4321111 1111111 1122344444 332 134666778999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1198)
||++||||++.+|+||||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999998764 47899999999998865 9999999999999877664
No 377
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=4.1e-32 Score=330.18 Aligned_cols=208 Identities=27% Similarity=0.362 Sum_probs=164.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEEECCeecCC-cCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKE-FQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~-~~~~~~r~ 460 (1198)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ......|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999963 3599999999999999999999999999999999998876 69999999987632 23345678
Q ss_pred ceEEEcCCCCCCc---ccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHH
Q 000984 461 KIGLVSQEPVLFT---GSIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~---~ti~~Ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkq 529 (1198)
+++|++|++.++. .++++++.++... ...+. .+ .+.+.++.+ |+.. ........|||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-QK-----LAQQWLDIL--GIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-HH-----HHHHHHHHc--CCchhhccCchhhCCHHHHH
Confidence 8999999986542 4777777543110 11111 10 112233333 4544 445566789999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-C-CeEEEEecCcchhhc--cCEEEEEeCCEEEEe
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN--ADMIAVIHRGKIVEK 601 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~ 601 (1198)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ + .|+|++||+++.+.. ||++++|++|+|++.
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999988754 3 469999999999864 799999999998764
No 378
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.2e-32 Score=276.02 Aligned_cols=214 Identities=24% Similarity=0.456 Sum_probs=182.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.+++++|+.+|++ ..+++|+||.+++|+..+++|+||+||||.+++|+|+++|++|+|.++|.+++.. .+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence 4789999999963 5699999999999999999999999999999999999999999999999887653 35589
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
||.|.+--|+ ..||.|-|.|... .....++.+ .+..+++++ +.--....+...||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~--~i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhc--cccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 9999999999 5799999997421 223344333 234456665 23333455667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|+++|||||+|+|||-+.+.+.+.|.++. ++.|+|+.|||++.+.. ||+++.|++|+.|-.|+.++..+.
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999998875 58999999999999976 999999999999999999888653
No 379
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=2.5e-31 Score=330.09 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=161.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..++++|++++|+. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 35999999999963 23599999999999999999999999999999999999999999999876 347
Q ss_pred eEEEcCCCCCCcccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
|+|++|++. ...++.+|..+. .+...++++..+++..++.+ .........||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~----------~~~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh----------HHhcCCccccCHHHHHHHHHHHHH
Confidence 999999873 223455553211 12234455555555444321 123445678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhH
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKL 607 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 607 (1198)
+.+|++|||||||++||+.+...+.+.+.+. +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999988888888765 3599999999999875 9999999999998 67877664
No 380
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-31 Score=251.58 Aligned_cols=195 Identities=28% Similarity=0.444 Sum_probs=157.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r 459 (1198)
.+.++||+.+-|. .-.|.|+|++|.+||++-|.||||||||||+.-+.|.+.+. +|++.+|++++..++.+ +
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 4678999988764 45899999999999999999999999999999999999884 79999999999888766 5
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCH-----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATT-----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~-----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|+.+||||||. -+|-+||.|..|..-. .....+++.. |++-.-.....+||||||.|++|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~-----------gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS-----------GLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHh-----------ccchhhhcChhhcCcchHHHHHH
Confidence 79999999999995 6999999998764322 2233344444 44444455567899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHH-H-hCCCeEEEEecCcchhhccCEEEEE
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDR-I-MVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~-~-~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
-|+|+..|+.++||||+|.||..-...+.+-+-. . ..+--+|+|||+.+.++.-.||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999876666554422 1 2367899999999988755555443
No 381
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.4e-31 Score=275.87 Aligned_cols=145 Identities=28% Similarity=0.381 Sum_probs=131.1
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~ 466 (1198)
.|++++|++ .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 578899953 468888 4999999999999999999999999999999999999999995 489999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEE
Q 000984 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1198)
Q Consensus 467 Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illl 546 (1198)
|++. ||||||||++||||++.+|+++||
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9763 999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhC-C-CeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 000984 547 DEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1198)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1198)
||||++||+++.+.+.+.++++.+ + +|+|++||+++.+.. ||++++|+++-.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999988753 3 899999999999875 9999999987554
No 382
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.9e-31 Score=271.98 Aligned_cols=154 Identities=41% Similarity=0.689 Sum_probs=143.6
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
++|+++.|+. .++++++||++++|+.++|+|+||||||||+++|.|+++|.+|+|.++|.++.+.....+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999964 3699999999999999999999999999999999999999999999999999887777788899999
Q ss_pred cCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEE
Q 000984 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1198)
Q Consensus 466 ~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1198)
+| ||||||||++||||++.+|+++|
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
|||||++||.++...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999987654 4899999999999988 69999999874
No 383
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.1e-31 Score=329.14 Aligned_cols=199 Identities=27% Similarity=0.413 Sum_probs=163.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcCCC--CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEP--VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~--~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+|++|++ .+. ..|+.+++....+....+++...++. + |+. .........||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------~--~l~~~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG---------F--GFQGDKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH---------c--CCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999985 343 34888887521222222333333333 3 332 2344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhHh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 608 (1198)
++|++|||||||++||+.+...+.+.|.++ +.|+|+|||+++++.. ||+|++|++|+++ ..|++++..
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999886 3599999999999875 9999999999997 788887763
No 384
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=3.7e-31 Score=325.24 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=164.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VK 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eE
Confidence 35999999999963 3599999999999999999999999999999999999999999999954 2 16
Q ss_pred eEEEcCCC-CCC-cccHHHHHhcCCCCCC----HHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEP-VLF-TGSIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~-~l~-~~ti~~Ni~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lA 534 (1198)
|+|+||++ .++ ..|+++|+.++..... +.+... .+..+ |+.. ........||||||||++||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRA---------YVGRF--NFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHH---------HHHhC--CCChhHhcCchhhCCHHHHHHHHHH
Confidence 99999997 555 4599999987532111 111111 23333 4432 24556678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeC-CEEE-EecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 610 (1198)
||++.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.++
T Consensus 458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999999886 3 489999999998875 999999986 7876 47787776543
No 385
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=4.8e-31 Score=324.34 Aligned_cols=200 Identities=24% Similarity=0.375 Sum_probs=163.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 5999999999963 3599999999999999999999999999999999999999999999954 2 169
Q ss_pred EEEcCCC-CCC-cccHHHHHhcCCCCC--C--HHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEP-VLF-TGSIKDNIAYGKDDA--T--TEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~-~l~-~~ti~~Ni~~~~~~~--~--~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|++|++ .++ ..|++||+.++.... . +.+.. +.+..+ |+.. ........||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 355 469999999764311 1 11111 233333 4432 245566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeC-CEEE-EecChhhHhc
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLVE 609 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 609 (1198)
|++.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999998863 589999999999875 999999987 5876 5577766543
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=2.7e-30 Score=289.93 Aligned_cols=215 Identities=26% Similarity=0.367 Sum_probs=143.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC--eecCCcCHHHHh
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIR 459 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g--~~~~~~~~~~~r 459 (1198)
..|.++|++++|+. .++++|..|++++|+++||+|++||||||+|++|.|--.|..-++.+-- .++..-....+.
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 35899999999964 4699999999999999999999999999999999997777554442210 011000000000
Q ss_pred cceEEEcCCCCCCcccHH-------HHHhcCCCCCCHH---HHHHHHHHhc-------HHHHHHhCCCCc-cchhcCCCC
Q 000984 460 KKIGLVSQEPVLFTGSIK-------DNIAYGKDDATTE---EIRVATELAN-------AAKFIDKLPQGI-DTLVGEHGT 521 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~-------~Ni~~~~~~~~~~---~~~~~~~~~~-------~~~~i~~l~~g~-~t~v~~~g~ 521 (1198)
.- ..+....+ |++.-..++...+ .+++-+...+ +...+..+ |. .......-.
T Consensus 151 ~v--------~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~ 220 (614)
T KOG0927|consen 151 AV--------VMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVK 220 (614)
T ss_pred HH--------hhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhh
Confidence 00 00111111 1111110110111 1111111100 11111111 22 233455667
Q ss_pred CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCE-EE
Q 000984 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK-IV 599 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~-i~ 599 (1198)
+||||||-|++|||||+.+|++|+|||||++||.++...+.+.+.+.... ++++++|.-+++.. |.+|+.|++++ +.
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~ 299 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIY 299 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceee
Confidence 89999999999999999999999999999999999999999988776322 89999999999987 99999999999 66
Q ss_pred EecChhhHhcC
Q 000984 600 EKGTHSKLVED 610 (1198)
Q Consensus 600 ~~g~~~~l~~~ 610 (1198)
+.|+++.+...
T Consensus 300 y~Gnydqy~~t 310 (614)
T KOG0927|consen 300 YEGNYDQYVKT 310 (614)
T ss_pred ecCCHHHHhhH
Confidence 88888877643
No 387
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.4e-31 Score=269.99 Aligned_cols=211 Identities=29% Similarity=0.449 Sum_probs=175.4
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRK 460 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~ 460 (1198)
.-|+++||++.|. ++++|+|||++|++||.-+|+||||||||||++++.|+++|++|.+.+-|+.....+. .++|+
T Consensus 30 ~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3599999999996 4579999999999999999999999999999999999999999999999999988877 99999
Q ss_pred ceEEEcCCCC---CCcccHHHHHhcCC------C--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 461 KIGLVSQEPV---LFTGSIKDNIAYGK------D--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 461 ~i~~v~Q~~~---l~~~ti~~Ni~~~~------~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
+||+|+-+-. .-+.+++|-++-|. . .+++++..++... ++.+ |.....++.-..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l------le~~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL------LELL--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH------HHHc--chhhhccCchhhcCHhHHH
Confidence 9999986532 22557777776432 1 2344444333222 2222 5555666777889999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC---CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
|+-|||||..+|++||||||+++||....+.+.+.+.++.. ..++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999888888888753 4789999999998865 69999999999998774
No 388
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=6.9e-31 Score=327.15 Aligned_cols=198 Identities=27% Similarity=0.444 Sum_probs=161.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5899999999963 46999999999999999999999999999999999999999999998 4322 69
Q ss_pred EEEcCCC-CCCc-ccHHHHHhcCCCCC--C--HHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEP-VLFT-GSIKDNIAYGKDDA--T--TEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~-~l~~-~ti~~Ni~~~~~~~--~--~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|++|++ .++. .|+.+|+.++.+.. . ..++. +.+..+ |+. .........||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVL---------GYLQDF--LFHPKRAMTPVKALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHH---------HHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHH
Confidence 9999986 3554 59999998754321 1 11222 223333 332 1234455689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEe-CCEEEE-ecChhhH
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-RGKIVE-KGTHSKL 607 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~~l 607 (1198)
|++.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+.+.+.. ||+|++|+ +|++.+ .|+|++.
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999875 4699999999999865 99999998 899875 5676665
No 389
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=6.9e-31 Score=270.43 Aligned_cols=155 Identities=24% Similarity=0.419 Sum_probs=128.9
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
.++|+|+||++++|++++|+||||||||||++++++ .+|++.++|.. ... .+.+++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 568999999999999999999999999999999963 68999998752 111 1345888877
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHHhhccC--CCEEEEeCCCCCCCH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDA 555 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lARal~~~--~~illlDe~ts~lD~ 555 (1198)
. +.++.+ |+.. ..+....+||||||||++||||++++ |+++||||||++||+
T Consensus 68 --------------~---------~~l~~~--~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------------L---------QFLIDV--GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred --------------H---------HHHHHc--CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 1 123333 3332 25667789999999999999999999 999999999999999
Q ss_pred HhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEE
Q 000984 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1198)
++.+.+.+.++++. .++|+|++||+++.+..||++++|++|+.
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99999999998875 47999999999999888999999976543
No 390
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.6e-30 Score=343.42 Aligned_cols=214 Identities=24% Similarity=0.403 Sum_probs=175.0
Q ss_pred cEEEEeEEEEcCCC----------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeec
Q 000984 383 DIELRDVYFSYPAR----------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINL 450 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~----------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~ 450 (1198)
.++++||++..+.. ....+|+|+|++++||++++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998532 123699999999999999999999999999999999999763 689999999876
Q ss_pred CCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCC----C-CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCC
Q 000984 451 KEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGK----D-DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1198)
Q Consensus 451 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g 520 (1198)
. ...+|+.+|||+|++.++ ..||+||+.|+. + ..+.+ .+.++++..++.+ -.++.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCC
Confidence 4 245677899999998776 469999998742 1 12222 2344555544433 2467777544
Q ss_pred -CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch--hhccCEEEEEeC-
Q 000984 521 -TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHR- 595 (1198)
Q Consensus 521 -~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~- 595 (1198)
..||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. +++|+|+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999998875 47899999999984 466999999996
Q ss_pred CEEEEecChhh
Q 000984 596 GKIVEKGTHSK 606 (1198)
Q Consensus 596 G~i~~~g~~~~ 606 (1198)
|++++.|+..+
T Consensus 1097 G~~v~~G~~~~ 1107 (1470)
T PLN03140 1097 GQVIYSGPLGR 1107 (1470)
T ss_pred CEEEEECCccc
Confidence 89999998753
No 391
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.1e-30 Score=319.15 Aligned_cols=192 Identities=27% Similarity=0.371 Sum_probs=161.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 5899999999953 25999999999999999999999999999999999999999999886 169
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|+||++.+ ++.|++||+.++..... ..... +.++.+ |++........+||||||||++|||||.++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS---------EIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHH---------HHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999865 46799999987532222 11222 233333 454445666778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999998753 6899999999998865 999999965 8777776
No 392
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=7.8e-31 Score=257.72 Aligned_cols=215 Identities=28% Similarity=0.481 Sum_probs=181.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC-eecCCcCHHHH-hc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-INLKEFQLQWI-RK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g-~~~~~~~~~~~-r~ 460 (1198)
.++++|++.+++. -.+|+|+||++.+||.-+|+||||+||||++-.|.|-.+|+.|++.++| .|+..++.+.+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 3788999999963 4599999999999999999999999999999999999999999999999 99999998877 56
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCCC--------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 461 KIGLVSQEPVLF-TGSIKDNIAYGKDDA--------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
.||-=+|.|..| +-||+||+.+..... ..+++.+.+... |+..........||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~i-----------gL~~~~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI-----------GLGDERDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHc-----------ccchhhhhhhhhhcc
Confidence 799999999999 569999998653211 112333333333 445455556678999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1198)
||||++-|+.-+.++|++|+||||++++-.+.....-+.++.+..++++++|.|++.+++. ||+|-||..|.+...|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999555445566777788888999999999999986 999999999999999999
Q ss_pred hhHhcCC
Q 000984 605 SKLVEDP 611 (1198)
Q Consensus 605 ~~l~~~~ 611 (1198)
+++.+++
T Consensus 231 d~v~~dp 237 (249)
T COG4674 231 DEVQNDP 237 (249)
T ss_pred HHhhcCc
Confidence 9987653
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=8e-29 Score=305.08 Aligned_cols=206 Identities=24% Similarity=0.388 Sum_probs=166.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cc
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TG 474 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~---~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ 474 (1198)
..+|+|++.-++||+.+.+.||.|||||||+++|.|..+- ..|+|..||.+.++.-. ++.++|++|+.+-| ..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4689999999999999999999999999999999997754 25699999999988876 77899999998766 57
Q ss_pred cHHHHHhcCC----C-----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC-CCCChHHHHHHhHHHhhccCCCEE
Q 000984 475 SIKDNIAYGK----D-----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 475 ti~~Ni~~~~----~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g-~~lSgGqkqri~lARal~~~~~il 544 (1198)
||||-|.|.. + +.++++... ......-.+-.|....||.||.+. ...|||||.|+++|-++..+++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~--~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLA--AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHH--HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 9999999842 1 122222221 111111113345557889999775 459999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcc--hhhccCEEEEEeCCEEEEecChhhHhc
Q 000984 545 LLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS--TVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
..||+|-+||+-|.-++.++++.+.+ +.|.++.=|+.+ .....|.|++|.+|+++.+|+.++.+.
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999987643 567777667764 567799999999999999999988753
No 394
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.1e-30 Score=259.09 Aligned_cols=215 Identities=29% Similarity=0.477 Sum_probs=176.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHH-h
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1198)
.++++|++.+-.++ +++|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.+||.||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999987432 4799999999999999999999999999999999995 68899999999999999998765 6
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
..|...+|.|.=+.| |+.+-+..+... ...+++.++++..++++.. ++-.+++ .+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN~---GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVNE---GFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccCC---CcCcchHH
Confidence 779999999987776 776666532111 1123444444444443321 2233333 59999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhcc--CEEEEEeCCEEEEecChhh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA--DMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~--d~i~~l~~G~i~~~g~~~~ 606 (1198)
|.-|+.+++.+|++.|||||-|+||..+-+.+.+.+..+. +++++++|||.-..+... |+|.||-+|+|+..|.+ +
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998876 478999999999988764 99999999999999999 6
Q ss_pred Hhc
Q 000984 607 LVE 609 (1198)
Q Consensus 607 l~~ 609 (1198)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 654
No 395
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.3e-29 Score=261.91 Aligned_cols=187 Identities=28% Similarity=0.423 Sum_probs=155.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC--cccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF--TGSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~--~~ti 476 (1198)
..+|+||||++++||.+||+|+||||||||+++|.|.++|++|+|.++| +++..---..=| +.|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccch
Confidence 4689999999999999999999999999999999999999999999999 455433333333 3589
Q ss_pred HHHHhcCC--CCCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC
Q 000984 477 KDNIAYGK--DDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1198)
Q Consensus 477 ~~Ni~~~~--~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1198)
||||.+-. ...+ ++.+.+..+-++|.+++ .....+.|.|++.|++.|-|.-.+|+|||+||.+
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi-----------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI-----------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh-----------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99997521 1122 34455555566666654 2334589999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHH-hCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 551 SALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 551 s~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|..|+.=.+.-.+.+.++ .+++|+|+|+|+++.+++ ||++++|++|+|...|++++..+
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 999999877777778777 678999999999999986 99999999999999999999865
No 396
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.96 E-value=6.8e-25 Score=244.20 Aligned_cols=437 Identities=16% Similarity=0.195 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHHHHHHhCCh---hhhhccCCcchHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhH
Q 000984 132 ERQATRIRGLYLKTILRQDV---AFFDNETNTGEVV---GRMSGDTVLIQDAMGEKVGKFLQLMATFLG-GFLIAFIKGW 204 (1198)
Q Consensus 132 ~~~~~~lr~~~~~~ll~~~~---~~f~~~~~~G~i~---~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~-~~i~~~~~~~ 204 (1198)
.+++-.+|..+.++++++=. .||.-.+.-|++- |.+++|+..+.+.+...+..+.-.++-++. ++-+.-...-
T Consensus 182 ~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s 261 (728)
T KOG0064|consen 182 SKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATS 261 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence 35556666666666655321 3332211223333 578899988888776555555444433221 1111111000
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHH--
Q 000984 205 LLT---LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS-- 279 (1198)
Q Consensus 205 ~l~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~-- 279 (1198)
..+ .+..+.+.+-..+.+.+++...++..+...........=+..+.+-..|..|+..+.+.++.++..+.....
T Consensus 262 ~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~ 341 (728)
T KOG0064|consen 262 VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMN 341 (728)
T ss_pred ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 000 001111111112233344444444444444445555666778899999999999998888777655443322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCHH------------HHHHHHHH-HHHHHHHHH
Q 000984 280 -GVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL-------EEGYNGG------------QVVNVMVA-VLTGSMSLG 338 (1198)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-------~~~~~~~------------~~~~~~~~-~l~~~~~l~ 338 (1198)
..+..++.-+. --.++=++|-|.-++. ....+.+ .-|++--. .+..+-++.
T Consensus 342 li~k~r~~YiMl--------eqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAie 413 (728)
T KOG0064|consen 342 LIFKVRLWYIML--------EQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIE 413 (728)
T ss_pred HHHHHHHHHHHH--------HHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 11222211111 0111233444432211 0111111 11111111 112222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HccC----------CCCCccC-----CCCcccCC-----CcccEEEEeEEEEcCC
Q 000984 339 EASPCLSAFGAGQAAAFKMFET---INRK----------PEIDAYD-----TKGKILDD-----IRGDIELRDVYFSYPA 395 (1198)
Q Consensus 339 ~~~~~~~~~~~~~~~~~r~~~~---~~~~----------~~~~~~~-----~~~~~~~~-----~~g~i~~~~v~~~y~~ 395 (1198)
.+....-.+.+-..-..|+++. +++. ++..+.. .++.+.+. ....|.++|+-.--|+
T Consensus 414 RlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~ 493 (728)
T KOG0064|consen 414 RLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPA 493 (728)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccC
Confidence 3333333333333334454432 2211 1110000 00000000 1234889998877665
Q ss_pred CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCccc
Q 000984 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1198)
Q Consensus 396 ~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 475 (1198)
. .-+...++|+|++|-.+.|+||||||||+|.+.|.|+.|...|...+.- +.+|-|+||.|.+--||
T Consensus 494 ~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 494 G--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGT 560 (728)
T ss_pred c--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCc
Confidence 3 3578999999999999999999999999999999999999999887653 33699999999988999
Q ss_pred HHHHHhcCCC-------CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeC
Q 000984 476 IKDNIAYGKD-------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1198)
Q Consensus 476 i~~Ni~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1198)
+||-|.++.. .++|.+++..++.++++.. .+-..|.|...+-+ .-||||+|||+++||-.|++|+--+|||
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i-~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI-LQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH-HHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 9999998642 4678889999999998764 45566777765433 4699999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE
Q 000984 549 ATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
+|||+-.+.|..+.++.++. +-+.|-||||++..+.-...+-.
T Consensus 639 cTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999988875 78999999999988765444443
No 397
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1e-28 Score=255.69 Aligned_cols=201 Identities=25% Similarity=0.399 Sum_probs=158.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEc-CCC---CCCc--
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QEP---VLFT-- 473 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~-Q~~---~l~~-- 473 (1198)
++.+||||+|++|+.++.+|+||+||||++|+|.|.+.|++|.|.++|.+--+-..+.+| ++++|. |.. |-.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeechhh
Confidence 588999999999999999999999999999999999999999999999876654444444 454443 322 3222
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCC
Q 000984 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1198)
.|.+=|=... +..+.+..+-. . ...+-| +++..+......||-|||-|.-||.||+++|+||+|||||=+|
T Consensus 117 ds~~v~~~Iy--~Ipd~~F~~r~--~---~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 117 DSLEVLKLIY--EIPDDEFAERL--D---FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhHHHHHHHH--hCCHHHHHHHH--H---HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 2222221111 23444444322 2 223333 6677777888899999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|..+...+.+.+++.. .++||++.||.++-+.. ||||++|++|+++..|+.++|.++
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999999999998764 47899999999998865 999999999999999999988764
No 398
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.3e-28 Score=233.19 Aligned_cols=227 Identities=27% Similarity=0.446 Sum_probs=177.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC-----eecCCcCHHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----INLKEFQLQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g-----~~~~~~~~~~ 457 (1198)
-+++++++..|... .--+|+||++.|||..+|||.||||||||+++|.+-+.|+.|+|..+- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 37788999999643 367999999999999999999999999999999999999999998865 2333344333
Q ss_pred ----HhcceEEEcCCCC--CC-----cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 000984 458 ----IRKKIGLVSQEPV--LF-----TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1198)
Q Consensus 458 ----~r~~i~~v~Q~~~--l~-----~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG 526 (1198)
+|..-|+|.|+|- |- .+.|-|-+. .-..-.+..++.. ..+|++... =+.+.+.+....+|||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlm-a~G~RHYG~iR~~-----a~~WL~~VE-I~~~RiDD~PrtFSGG 155 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAE-----AQDWLEEVE-IDLDRIDDLPRTFSGG 155 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHH-hhhhhhhhhHHHH-----HHHHHHhcc-cCcccccCcccccchH
Confidence 3456899999993 11 123333332 1111111222221 234555543 2345778888999999
Q ss_pred HHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 000984 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1198)
++||+-|||-|...|+++++||||.+||......+.+.++.+-. +-.+++|||++...+. +||.+||++|+++|.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999898887653 5689999999999876 99999999999999999
Q ss_pred hhhHhcCCCchhHHHH
Q 000984 604 HSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 604 ~~~l~~~~~~~~~~~~ 619 (1198)
.+..+.++...|.++.
T Consensus 236 TDrvLDDP~hPYTQLL 251 (258)
T COG4107 236 TDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccCCCCchHHHH
Confidence 9999998888888775
No 399
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.1e-28 Score=299.29 Aligned_cols=220 Identities=31% Similarity=0.484 Sum_probs=179.1
Q ss_pred ccEEEEeEEEEcCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCCeEEECCeecCCcCHH
Q 000984 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~---~~G~i~i~g~~~~~~~~~ 456 (1198)
-.+.++|++..-+... .+.+|+|||.+++|||..||.||||||||||+++|.|-.+. .+|+|.+||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3588999998876542 47899999999999999999999999999999999999874 7899999993 45667
Q ss_pred HHhcceEEEcCCCCCC-cccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCC--CccchhcC-CCCCCChHH
Q 000984 457 WIRKKIGLVSQEPVLF-TGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQ--GIDTLVGE-HGTQLSGGQ 527 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~--g~~t~v~~-~g~~lSgGq 527 (1198)
.+++..|||.||..++ +-||||++.|.. |. .+.++..+. +++.+.+|.- =-||.+|. +...+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~-----V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRER-----VEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCChhhccceecCCCCCccccch
Confidence 7889999999999988 569999998742 21 122222211 1223333311 14577764 335799999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch--hhccCEEEEEeCCEEEEecCh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
|+|+++|.-++.||.||+||||||+||+.+...+.+.++++. +|||||+.=|+++. ....|++++|.+|+++..|++
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999998875 58999999999974 466999999999999999999
Q ss_pred hhHhc
Q 000984 605 SKLVE 609 (1198)
Q Consensus 605 ~~l~~ 609 (1198)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 88753
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=5.6e-29 Score=249.23 Aligned_cols=136 Identities=38% Similarity=0.727 Sum_probs=122.6
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc-cHHHHH
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNI 480 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~Ni 480 (1198)
|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|.++.+.+....|+.++|++|+++++.+ |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999875 59999
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1198)
..+++++++++..++.+ ..++.++.+...||||||||++||||++++|++||||||||
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23556777776665443 35677888889999999999999999999999999999996
No 401
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=6.3e-27 Score=277.73 Aligned_cols=203 Identities=29% Similarity=0.389 Sum_probs=170.6
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+++|.|...|.+|+|.+.-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 458999999999643 57999999999999999999999999999999999999999999987541 27
Q ss_pred eEEEcCCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 462 IGLVSQEP-VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 462 i~~v~Q~~-~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||.+|+- .++ +.|+-|++.-..|...+.+++..+...++... .+......||||||.|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~----------~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE----------DQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH----------HHhCchhhcCHhHHHHHHHHHHhcc
Confidence 99999988 343 45899999866655556667766666543322 1234456799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe-cChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK-GTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~l~~~ 610 (1198)
+|.+|||||||++||.++...+.++|..+ ..|+|+|||+..++.. |++|+.+++ ++.+. |++++..+.
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999886 5799999999999987 999999998 77765 888877653
No 402
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=6.8e-24 Score=249.11 Aligned_cols=390 Identities=12% Similarity=0.123 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChh------hHHHHHHhhHHHHHHHH
Q 000984 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSG------AIGARLSADAASVRALV 837 (1198)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G------~i~~r~s~D~~~i~~~l 837 (1198)
+.+|..++.+..++...+.|+......+.-.-|-+.+.++-+...-.||. ...| ..=.|+..|+...-+..
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l---~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL---AQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH---HhcccccCCCChHHhHHHHHHHHHhhH
Confidence 44555666666667777888888888888888888888888888855554 2333 23479999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000984 838 GDALARIVQNISTAAAGLIIAF---------------TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1198)
Q Consensus 838 ~~~l~~~i~~~~~~i~~li~~~---------------~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1198)
......++.++++++...+++. .+...+.+++++.+++..++...++|.+.+.+-+.++..++..
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 8888888888888777777665 3455666777777777777888899999999999999999998
Q ss_pred HHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Q 000984 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982 (1198)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l 982 (1198)
..+.-.-++...|-.|+.|+.+.++.++..+...+...+.......+..+......+..++-+..++-....|.+++|++
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 88888888999999999999999998888877766655554444444444444444444444555666678899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC------CCCCCCCCCCCcc--cCCcccEEEeeeeEECCC
Q 000984 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRE------SKIDPSDESGTIL--EDVKGEIELHHVSFKYPS 1054 (1198)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~------~~~~~~~~~~~~~--~~~~G~I~f~nVsf~Y~~ 1054 (1198)
+............++......+.+..-.+...|+.++.+.- ++.+... ..... ......|+|+|++..-|+
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~nl~l~~p~ 404 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPART-GRRIDFDDNADHGITLENLSLRTPD 404 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcc-cccccccccccceeEEeeeeEECCC
Confidence 99999999999999999999999999999999998876422 1111110 00000 001467999999999985
Q ss_pred CCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccccccccc
Q 000984 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1198)
Q Consensus 1055 ~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1198)
+ ...|+++||+|+|||.+-|.|+||||||||+++|.++|+..+|+|.+=. -+++-++||.|++=.||
T Consensus 405 ~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~Gt 471 (604)
T COG4178 405 G--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGT 471 (604)
T ss_pred C--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCcc
Confidence 4 3689999999999999999999999999999999999999999886641 12458999999999999
Q ss_pred HHHHHhcCCCC-CCCHHHHHHHHHHcchHHHHHhccc
Q 000984 1135 IRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1135 IreNI~~g~~~-~~tdeei~~Al~~A~l~dfI~~LP~ 1170 (1198)
+||=|.|-+.+ +.+|+|+.+++.++++.+++++|.+
T Consensus 472 Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 99999985433 3899999999999999999999754
No 403
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-27 Score=233.10 Aligned_cols=188 Identities=22% Similarity=0.383 Sum_probs=155.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
++.+|++..- .+..++.++||++.+||.+-|.||||||||||+++|.|+++|.+|+|.++|.++..... ..++.+-
T Consensus 3 L~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALL 78 (209)
T ss_pred chhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHH
Confidence 3456666653 34679999999999999999999999999999999999999999999999988876543 3466788
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 464 LVSQEPVLF-TGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 464 ~v~Q~~~l~-~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|+.-.|-+= .-|+.||+.|-... .+.+.++++++.+++... ..+| + .+||.|||.|+||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcC
Confidence 888888765 56999999985432 356889999999887653 3333 3 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~ 586 (1198)
.+++.|||||+++||.+....+...+.... ++..||+.||..-.+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999999888887654 57788899998765543
No 404
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=7e-27 Score=253.46 Aligned_cols=193 Identities=24% Similarity=0.329 Sum_probs=127.7
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC-C------eecC---CcCHHHHhc-ceEEEc
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-G------INLK---EFQLQWIRK-KIGLVS 466 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~-g------~~~~---~~~~~~~r~-~i~~v~ 466 (1198)
+.++|+|+||++++||+++|+|+||||||||+..+.. .+|++.+. + ..+. .-+...++. ..++..
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 3569999999999999999999999999999632221 12332211 0 0000 000111121 234444
Q ss_pred CCCCC-Cc-----ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 467 QEPVL-FT-----GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 467 Q~~~l-~~-----~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|++.. ++ +++.+...+.......+..... .+.++.+ |+.. .......+||||||||++||||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 54431 11 1222222110000011111111 1233343 4443 3567788999999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eCCEEEEec
Q 000984 540 DP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKG 602 (1198)
Q Consensus 540 ~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g 602 (1198)
+| +++||||||++||+.+...+.+.++++. ++.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998764 478999999999998889999999 999999886
No 405
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.3e-26 Score=252.92 Aligned_cols=193 Identities=25% Similarity=0.409 Sum_probs=141.0
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-----ccC-----CCCCC-----------eEEECCeecCCcC---H-
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE-----RFY-----DPQAG-----------EVLIDGINLKEFQ---L- 455 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-----g~~-----~~~~G-----------~i~i~g~~~~~~~---~- 455 (1198)
.|+|++++|+.|.+++|+|+||||||||++.++ +.+ .|..+ -|.+|..++..-. +
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998653 111 12222 2556665553221 1
Q ss_pred ------HHHhc----------------ceEEEcCCCC-CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc
Q 000984 456 ------QWIRK----------------KIGLVSQEPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1198)
Q Consensus 456 ------~~~r~----------------~i~~v~Q~~~-l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 512 (1198)
+.+|+ .+.|..++.. +.+.|+.||+.|..... .+.+ ..+.++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---~~~~------~~~~L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---KIAR------KLQTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---hHHH------HHHHHHHc--CC
Confidence 11111 1344444443 33557777776532211 1111 12233333 66
Q ss_pred cc-hhcCCCCCCChHHHHHHhHHHhhccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhcc
Q 000984 513 DT-LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA 587 (1198)
Q Consensus 513 ~t-~v~~~g~~lSgGqkqri~lARal~~~---~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~ 587 (1198)
+. ..++...+||||||||++|||||.++ |+++||||||++||++....+.+.++++. ++.|+|+|+|+++.+..|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 65 47888899999999999999999996 79999999999999999999999998875 478999999999999999
Q ss_pred CEEEEE------eCCEEEEecCh
Q 000984 588 DMIAVI------HRGKIVEKGTH 604 (1198)
Q Consensus 588 d~i~~l------~~G~i~~~g~~ 604 (1198)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999975
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=1.1e-25 Score=292.91 Aligned_cols=210 Identities=27% Similarity=0.379 Sum_probs=150.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHH---------HHhccCCCCCC----e----EEE
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS---------LIERFYDPQAG----E----VLI 445 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~---------~l~g~~~~~~G----~----i~i 445 (1198)
.++++|++. ..|+|+|++|++||+++|+|+||||||||++ .|.|...+..+ . |.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478887751 2799999999999999999999999999999 55554322111 1 344
Q ss_pred CCeecCCcC----H------HHHh---------c-----ceEEEcCC------------------C--------------
Q 000984 446 DGINLKEFQ----L------QWIR---------K-----KIGLVSQE------------------P-------------- 469 (1198)
Q Consensus 446 ~g~~~~~~~----~------~~~r---------~-----~i~~v~Q~------------------~-------------- 469 (1198)
|-.++..-. . +++| + ...+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 444433210 1 1333 1 11223332 1
Q ss_pred ------CCC-cccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHhHHHh
Q 000984 470 ------VLF-TGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 470 ------~l~-~~ti~~Ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lARa 536 (1198)
..+ .-||.||+.++..++ +.+++.+.+ +.++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 022 237888888753211 112222222 123333 77665 688889999999999999999
Q ss_pred hc---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEe------CCEEEEecChhh
Q 000984 537 IL---KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIH------RGKIVEKGTHSK 606 (1198)
Q Consensus 537 l~---~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~------~G~i~~~g~~~~ 606 (1198)
|+ ++|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|+|+++.+..||+|++|+ +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 4789999999999998899999996 789999999887
Q ss_pred Hh
Q 000984 607 LV 608 (1198)
Q Consensus 607 l~ 608 (1198)
+.
T Consensus 904 l~ 905 (1809)
T PRK00635 904 LI 905 (1809)
T ss_pred HH
Confidence 64
No 407
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=2.1e-26 Score=243.56 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=131.0
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---------CeEEECCeecCCcCHHHHhcceEEEcCCCCCCc
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---------GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~---------G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 473 (1198)
+++++++++| +++|+||||||||||+++|.|+..+.. |++.++|.++... ..++++++++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4577777766432 2357899999999887
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc----cCCCEEEEeCC
Q 000984 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEA 549 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~----~~~~illlDe~ 549 (1198)
|+.. ..+++.++++. ++- .......||||||||++||||+. ++|+++|||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 12333333322 211 23445679999999999999985 57799999999
Q ss_pred CCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
|++||+.....+.+.++++.++.|+|+|||+++.+..||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778999999999999888999999853
No 408
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=2.4e-26 Score=255.15 Aligned_cols=132 Identities=27% Similarity=0.472 Sum_probs=122.8
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+|+|+||+++|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++ ++|+|+|||+|+.++++.++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999743 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|||+|.+|++|+++||++. ...++++++++++.+++++++.++|++|||.+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~--~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~ 132 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPY--GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132 (275)
T ss_pred EEEECCCcccchhhHHHHhhhc--cCCCHHHHHHHHHHcCCHHHHHhCccccccee
Confidence 9999999999999999999743 13678999999999999999999999999987
No 409
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=5.7e-26 Score=253.99 Aligned_cols=197 Identities=27% Similarity=0.349 Sum_probs=135.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
.+|...+.+.+|++ +.+|.+-++++..|-.+|+|||||+|||||+++|.. |.|.+-.++ +++|.-
T Consensus 79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 46889999999974 469999999999999999999999999999999998 444322210 000000
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCC----CHHHHHH-HHHHhcHHHHHHhCCCCccchhcCC-CCCCChHHHHHHhHHH
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDA----TTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH-GTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~----~~~~~~~-~~~~~~~~~~i~~l~~g~~t~v~~~-g~~lSgGqkqri~lAR 535 (1198)
-....| ..+-.++-|.-+..-.+.. +.+++.. ++.-. |...+.-.+ -..||||=|=|++|||
T Consensus 144 ~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl-----------GFt~emq~~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 144 DTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL-----------GFTPEMQLQPTKSLSGGWRMRLALAR 211 (582)
T ss_pred chHHHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC-----------CCCHHHHhccccccCcchhhHHHHHH
Confidence 000001 0122334444433211000 1122222 33333 333333222 3469999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhH
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKL 607 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 607 (1198)
||+.+||||||||||+.||..+-.++.+.|..+ ..|+|+|+|+-+++.. |.-|+.+++-++- +.|++++.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999999999876 3899999999999987 8889998876653 44444444
No 410
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.2e-25 Score=212.21 Aligned_cols=202 Identities=27% Similarity=0.359 Sum_probs=142.4
Q ss_pred EEEEeEEEEcCC----CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC----eecCCcCH
Q 000984 384 IELRDVYFSYPA----RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG----INLKEFQL 455 (1198)
Q Consensus 384 i~~~~v~~~y~~----~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g----~~~~~~~~ 455 (1198)
+.++|++.++-- .-.-|+++|+||+++.||++++-||||+|||||+++|.+-|.|++|+|.+.- +|+..-.+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 566777655521 1124799999999999999999999999999999999999999999998843 34444443
Q ss_pred HH----HhcceEEEcCCCCCC-cc----cHHHHHh-cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 456 QW----IRKKIGLVSQEPVLF-TG----SIKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 456 ~~----~r~~i~~v~Q~~~l~-~~----ti~~Ni~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
.+ .|+.||||+|---.. .- -+.|-+. .|-+ .+....++.. +... -++|..+... ...++||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~--~~~a~~~a~~---Ll~r-LnlperLW~L---aPaTFSG 155 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP--REVARAKAAD---LLTR-LNLPERLWSL---APATFSG 155 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC--HHHHHHHHHH---HHHH-cCCCHHHhcC---CCcccCC
Confidence 33 356799999953211 11 1223222 1221 1111111111 1111 1334333322 3468999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEe
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1198)
|++||+.|||.+.-|-+||+|||||++||+.+.+.+.+.|.+.+ ++..+|=|=|+-+.=.. |||++-|.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999999999999999999998765 56788889999876544 89988774
No 411
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=6.9e-25 Score=280.38 Aligned_cols=216 Identities=22% Similarity=0.414 Sum_probs=183.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-CHHHHhc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRK 460 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~ 460 (1198)
..+..+|++..|+.+.. +.+++|+.+++||+.|+.|+|||||||++++|.|+..|++|++.++|.+++.- +..+.++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 35889999999976532 89999999999999999999999999999999999999999999999999754 5566899
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcC-----CCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYG-----KDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~-----~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
++|||||+..++. -|.||.+.+. .+..+ .+.+...++..++.+. .++ ...++|||+|.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-------~~~----~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-------ANK----QVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-------hcc----chhhCCCcchhhHHH
Confidence 9999999998884 6999999763 22111 1234444444444332 223 345899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCC-eEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~-t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|-|++.+|++++|||||+++||.+.+.+.+.|.+..++. .+|+.||.++..+. |||+.+|.+|++..-|++++|..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999999988754 99999999999986 999999999999999999999654
No 412
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.91 E-value=6.7e-25 Score=236.27 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=139.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEe-CCCEEEEEcCCCCcHHHHHHHHhc-cCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISIS-SGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~-~g~~~~ivG~~GsGKStl~~~l~g-~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.|+++|.. +|..+ ++++|+.. +|++++|+||||||||||+++|.+ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 48889988 66422 46677654 589999999999999999999995 555555555443 1222333344567
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCC-CccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ-GIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
.|++++|++.-.-...| ++ ..+.++..+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~~~r----~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYRVER----SR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEEEEE----ec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 89999999843222222 11 233343332210 111 35566677888999999999999999974
Q ss_pred ----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 540 ----------DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 540 ----------~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|+|||+++.+.. +|+++++++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988765 7899999999998876 899999998853
No 413
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=1.4e-21 Score=218.71 Aligned_cols=273 Identities=21% Similarity=0.342 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 722 LAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801 (1198)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~ 801 (1198)
++++++.++.++..+..+++++.+++...............+...++++.++...+.....+...+.+.+...++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777778899999998754322111111122222233334444555555666678899999999999999
Q ss_pred HHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000984 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY 881 (1198)
Q Consensus 802 ~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~ 881 (1198)
+|+++.|.+||+ ++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|+++++++++.|+..++..
T Consensus 82 ~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 82 EKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 999999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHH
Q 000984 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY 961 (1198)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1198)
...++.++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+.........+....+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999988888889
Q ss_pred HHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 000984 962 AASFYAGARL-VEDGKATFSDVFKVFFSLTMTAIGI 996 (1198)
Q Consensus 962 ~~~~~~g~~l-~~~g~~t~g~l~~~~~~~~~~~~~l 996 (1198)
++++++|+++ +.+|.+++|+++++..+......|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999999999 9999999999999999988887774
No 414
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=2.2e-24 Score=238.18 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=130.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc----------------CCCCCC------
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF----------------YDPQAG------ 441 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~----------------~~~~~G------ 441 (1198)
|+++|.. +|. +..++++++ |++++|+||||||||||+++|.+. +.+.+|
T Consensus 4 i~~~nfk-sy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGFK-SYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCcc-Ccc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 5666532 353 234777776 889999999999999999999844 334444
Q ss_pred --eEEECCeecC-Cc--CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH--HhCCCC---
Q 000984 442 --EVLIDGINLK-EF--QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI--DKLPQG--- 511 (1198)
Q Consensus 442 --~i~i~g~~~~-~~--~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~g--- 511 (1198)
+|.+++.+-. .+ ....+++++++++|++.++.. ..+.++++..++..++...- ..+|+|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 4444442211 00 122345667888877765431 12334444444443322100 001112
Q ss_pred ----ccchhcCCCCCCChHHHHHHhHHHhhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcch
Q 000984 512 ----IDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1198)
Q Consensus 512 ----~~t~v~~~g~~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1198)
+....++.+.+||||||||++||||++ ++|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 122345677899999999999999996 468999999999999999999999999988777888888999887
Q ss_pred hhccCEEEEEe
Q 000984 584 VRNADMIAVIH 594 (1198)
Q Consensus 584 ~~~~d~i~~l~ 594 (1198)
...||++++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 77899999995
No 415
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.1e-24 Score=210.24 Aligned_cols=208 Identities=25% Similarity=0.407 Sum_probs=172.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+.++||+..- -|-.+|..+..||..-+|||+|||||||+..+.|+. |-+|+|.++|.++.....+++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 4566665431 356788999999999999999999999999999987 78899999999999999999999999
Q ss_pred EEcCCC-CCCcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc--
Q 000984 464 LVSQEP-VLFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-- 539 (1198)
Q Consensus 464 ~v~Q~~-~l~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~-- 539 (1198)
|..|+. ..|...|..-+.+..|+.+ .+++..+|++- +++..+++.-..||||+-||+-||-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998865 5788888888887666421 12333333333 45556677778999999999999998886
Q ss_pred -----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcc-hhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 -----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 -----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
..++||+|||-++||...+..+.+.+.+++ ++.+||+..|+++ ++++||++..+..|++..+|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 357999999999999998888888887776 5799999999997 6899999999999999999999998754
No 416
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=2.3e-24 Score=242.56 Aligned_cols=198 Identities=29% Similarity=0.394 Sum_probs=165.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|.++||+|.|++. +.++++++|-|.+++.+++|||||||||||++++.|.+.|..|.|.-.-+. ++
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 58999999999754 379999999999999999999999999999999999999999998765432 46
Q ss_pred EEEcCCC---CCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 GLVSQEP---VLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++-.|+- .-+..|.-+++.--.++ -..+++...+..+++..+.+..| -.+||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHh
Confidence 6666654 34567888888754453 45677888888888765543333 2489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHS 605 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~ 605 (1198)
+.|.+|+|||||++||.++...+.++|.++ ..+||+|+|+...+.+ +++|.+.++|.+. ..|.+.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999999999999999999886 5689999999999987 8999999999876 345443
No 417
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.2e-23 Score=238.96 Aligned_cols=213 Identities=23% Similarity=0.375 Sum_probs=169.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC-HHHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~~ 461 (1198)
.++++|++.. ..++|+||++++||+++|.|-.|||+|-|+++|+|.-++.+|+|.+||.++.-.+ .+.++..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3667776532 1578999999999999999999999999999999988899999999999988766 4578889
Q ss_pred eEEEcCCCC---C-CcccHHHHHhcCC-CCCCHH-HHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEPV---L-FTGSIKDNIAYGK-DDATTE-EIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~~---l-~~~ti~~Ni~~~~-~~~~~~-~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lA 534 (1198)
|+|||.|-- + ...+|++|+.+.. ...... .+....+.....+++..| +..+. ......+||||-+|++.||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l--~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL--RIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhc--CcccCCccchhhcCCchhhhhHHHH
Confidence 999999863 4 4679999998751 111100 233333333444556555 22221 2234467999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecCh
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 604 (1198)
|.|+.+|++|||||||-++|.-+...|.+.|+++. +++++|+||..+..+. .||||+||.+|+|+..=+.
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999875 5799999999998775 6999999999999864333
No 418
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=1.2e-23 Score=224.13 Aligned_cols=163 Identities=24% Similarity=0.292 Sum_probs=128.0
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHh----ccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC-----CCCc-c
Q 000984 405 FSISISSGTTAALVGQSGSGKSTVISLIE----RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-----VLFT-G 474 (1198)
Q Consensus 405 i~l~i~~g~~~~ivG~~GsGKStl~~~l~----g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-----~l~~-~ 474 (1198)
.++++.+| +++|+||||||||||+.+|. |...|..|.+..+...+ .....+..+++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34667777 99999999999999999994 98888887765222111 2223456899999998 3332 3
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH------HhHHHhhccCCCEEEEeC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR------IAIARAILKDPRILLLDE 548 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr------i~lARal~~~~~illlDe 548 (1198)
|+.+|+.++. .+++.. . +.+....||+||||| ++||||+..+|+++||||
T Consensus 92 ~~~~~~~~~~----~~~~~~---------~-----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESNW---------P-----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHHH---------H-----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998642 222211 1 145567899999996 799999999999999999
Q ss_pred CCCCCCHHhHH-HHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeC
Q 000984 549 ATSALDAESEK-VVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 549 ~ts~lD~~~~~-~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
||++||+++.. .+.+.++++.+ ++|+|++||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999988 99999988765 6899999999998888999999964
No 419
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=6e-24 Score=209.28 Aligned_cols=128 Identities=28% Similarity=0.450 Sum_probs=112.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1198)
|+|+||+.+|+.. +++|+||||+|++||.+=++|||||||||+++||++-..|++|+|.++|.|++.+.-. -||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 5699999999999999999999999999999999999999999999999999888655 5899
Q ss_pred hcceeccccccc-cccHHHHHhcC-----CCCCCCHHHHHHHHHHcchHHHHHhccccc
Q 000984 1120 QMGLVSQEPVLF-NDTIRANIAYG-----KGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF-~gTIreNI~~g-----~~~~~tdeei~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
+||+|+||--|. +-|+.||++|. .++..-.+.+.++++.+++.+-...||..+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~L 138 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL 138 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcccc
Confidence 999999999765 67999999974 222223456788999999999999999755
No 420
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.89 E-value=3.5e-22 Score=251.45 Aligned_cols=102 Identities=31% Similarity=0.537 Sum_probs=92.9
Q ss_pred Cccc-hhcCCCCCCChHHHHHHhHHHhhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 000984 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1198)
Q Consensus 511 g~~t-~v~~~g~~lSgGqkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~ 585 (1198)
|++. .++....+||||||||+.|||+|+++| ++|||||||++||+++.+.+.+.++++. +++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 6654 468888999999999999999999999 9999999999999999999999998875 4789999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhhHhcCCC
Q 000984 586 NADMIAVI------HRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 586 ~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 612 (1198)
.||+|++| ++|+|++.|+++++.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999 7999999999999987644
No 421
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=5.4e-23 Score=227.55 Aligned_cols=182 Identities=19% Similarity=0.233 Sum_probs=133.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC-CCeEEECCe-ecCCcC-H-HHHhcceEEEcCCCCC---------C-cccHH
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGI-NLKEFQ-L-QWIRKKIGLVSQEPVL---------F-TGSIK 477 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~-~~~~~~-~-~~~r~~i~~v~Q~~~l---------~-~~ti~ 477 (1198)
..+++||||||||||||+.+|.+.+.+. .|++...|. ++-... . ...+.++++++|+|-. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 568888776 432111 1 1224589999999621 1 45777
Q ss_pred HHHhcCCC--------CCCHHHHHHHHHHhcHHH----------HHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc-
Q 000984 478 DNIAYGKD--------DATTEEIRVATELANAAK----------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL- 538 (1198)
Q Consensus 478 ~Ni~~~~~--------~~~~~~~~~~~~~~~~~~----------~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~- 538 (1198)
+|+..+.. ....+++.+.++.+++.- .|..+-+. ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 77765431 112345555555554420 00000000 02345567789999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEe
Q 000984 539 ---KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1198)
Q Consensus 539 ---~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1198)
.+|+++||||||++||+.....+.+.++++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998878889999999988888999998875
No 422
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.5e-23 Score=206.91 Aligned_cols=122 Identities=32% Similarity=0.495 Sum_probs=109.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-----CeEEECCcccCC--CCh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK--LQL 1114 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~-----G~I~IDG~dI~~--i~l 1114 (1198)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||+++.|-|+.|... |+|.+||+||.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 3469999999999999999999999999999999999999976 999999999976 589
Q ss_pred HHHHhhcceeccccccccccHHHHHhcCCC-CC----CCHHHHHHHHHHcchHHHHH
Q 000984 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GD----ATEAEIQAASEMANAHKFIC 1166 (1198)
Q Consensus 1115 ~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-~~----~tdeei~~Al~~A~l~dfI~ 1166 (1198)
-.||++||+|+|.|.-|..||+||++||.. +. .-||-++++++.|.+||-+.
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK 140 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH
Confidence 999999999999999999999999999943 11 22455788999999999874
No 423
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.4e-23 Score=232.90 Aligned_cols=124 Identities=31% Similarity=0.498 Sum_probs=105.5
Q ss_pred CCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCCeEEECCcccC--
Q 000984 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQ-- 1110 (1198)
Q Consensus 1038 ~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd-----p~~G~I~IDG~dI~-- 1110 (1198)
+..+.|+|+||+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ |++|+|.|||+|++
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 456789999999999642 3469999999999999999999999999999999999997 57999999999997
Q ss_pred CCChHHHHhhcceeccccccccccHHHHHhcCCC-CCCCHHHH-----HHHHHHcchH
Q 000984 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDATEAEI-----QAASEMANAH 1162 (1198)
Q Consensus 1111 ~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-~~~tdeei-----~~Al~~A~l~ 1162 (1198)
++++..+|+++++|||+|.+|++|++|||.|++. ...++++. .++++.++++
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 212 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW 212 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc
Confidence 4567889999999999999999999999998742 12455543 5567777764
No 424
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.88 E-value=4e-23 Score=212.29 Aligned_cols=127 Identities=29% Similarity=0.452 Sum_probs=111.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcchH--HHHHhccccc
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKG-GDATE----AEIQAASEMANAH--KFICSLQQVR 1172 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~--dfI~~LP~g~ 1172 (1198)
||-|..-|| +-||.|||.+-+. ...+. +.+.+-++.++++ +|-.+.|..+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 999999999 6799999986421 12343 4467778899986 5888887643
No 425
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=4.3e-23 Score=254.86 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=166.2
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--CCCCeEEECCeecCCcCHHHHhcceEEEcCCC-CCCcc
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG 474 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~~ 474 (1198)
.+.+|+||+=-++||.++|++|+||||||||++.|.|-.. ..+|+|+|||.+..+ +..++.+|||.|++ ++=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3579999999999999999999999999999999998542 257899999988765 67788999999987 56678
Q ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC-CEE
Q 000984 475 SIKDNIAYGK----D-DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP-RIL 544 (1198)
Q Consensus 475 ti~~Ni~~~~----~-~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~-~il 544 (1198)
||||-+.|.. | +.++ +.++++.+..++.+. -|..||.-|..||.+||.|+.||=-|..+| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998741 1 2233 334555555554432 467899999999999999999999999999 899
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcch--hhccCEEEEEe-CCEEEEecChhh
Q 000984 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIH-RGKIVEKGTHSK 606 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~-~G~i~~~g~~~~ 606 (1198)
.||||||+||++++..|.+.++++. .|+|++..-|+++. ++..|+++.|+ +|+.+..|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999998875 58999999999984 56799999996 679999998654
No 426
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.6e-22 Score=219.98 Aligned_cols=133 Identities=33% Similarity=0.573 Sum_probs=122.3
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 569999999999743 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++++||+|.+|++|++|||.+.. ..+.+++.++++..++.+++.+||.|+++.+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 133 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVV 133 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999998753 4577889999999999999999999998864
No 427
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=3.2e-23 Score=221.79 Aligned_cols=184 Identities=21% Similarity=0.267 Sum_probs=133.2
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHh-cc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1198)
.|+++|.. +|. +..+++++++ ++++|+|||||||||++++|. .++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 36777775 664 3458888887 899999999999999999997 2344332 1233 57
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHH-----HHHH-H----HhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEI-----RVAT-E----LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~-----~~~~-~----~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqr 530 (1198)
+++++|++.++. .|+++++.+.......+.. .... . ...+ ..+..+|++.++.+ ..||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccch----hhcCHHHHHH
Confidence 999999987664 3677766653221111100 0000 0 0111 12345566665544 4799999999
Q ss_pred HhHHHhhcc----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 531 IAIARAILK----DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 531 i~lARal~~----~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
++||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+....||+|++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999963 58999999999999999999999999998778899999999887788999999963
No 428
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=3.4e-22 Score=221.99 Aligned_cols=135 Identities=30% Similarity=0.513 Sum_probs=122.9
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
..|.|+++||+++|+.. +.++|+|+||+|+|||.+||+|++|||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 56889999999999742 24699999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++|++|+|+|.+|++|+++|+.+.. ...+++++++++.+++++++..+|.|+++.+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~ 150 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVV 150 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEe
Confidence 9999999999999999999997642 2356778999999999999999999999864
No 429
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2e-22 Score=203.63 Aligned_cols=128 Identities=28% Similarity=0.422 Sum_probs=109.5
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCChHHHHhh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQ 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~-~i~l~~LR~~ 1120 (1198)
-|+++||+.+|.+ ..||+|||++|++||+|+|+||||||||||+++|.++-+|++|+|.|||.++. ..++..+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999963 36999999999999999999999999999999999999999999999998773 3489999999
Q ss_pred cceeccccccc-cccHHHHHhcCCC--CCCCHHH----HHHHHHHcchHHHHHhccccc
Q 000984 1121 MGLVSQEPVLF-NDTIRANIAYGKG--GDATEAE----IQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1121 IsiV~Qdp~LF-~gTIreNI~~g~~--~~~tdee----i~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
+|+|+|...|| +-|+.||+.+++- ...+.+| -.+.++++++.|-..+.|..+
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcccc
Confidence 99999999999 6799999998742 1223333 355678999999998887644
No 430
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=7.8e-22 Score=215.21 Aligned_cols=137 Identities=42% Similarity=0.750 Sum_probs=120.1
Q ss_pred CCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 000984 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1038 ~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L 1117 (1198)
...|.|+++|++++|+++.+.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34678999999999975322469999999999999999999999999999999999999999999999999988888888
Q ss_pred HhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
|+++++|||++.+|.+|++||+.++.. ..+.+++++.++...+++++..+|.|+++.
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 143 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTE 143 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccch
Confidence 999999999999999999999998743 345566777777788899999998887654
No 431
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=9e-22 Score=215.28 Aligned_cols=132 Identities=42% Similarity=0.748 Sum_probs=119.9
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+|+++|++++|++ ..++|+|+||+|++||.+||+||+|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46999999999963 2359999999999999999999999999999999999999999999999999999888899999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
++++||++.+|++|++||+.++.. ...++++.++++..++.++++.+|.|+++.
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 132 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCH
Confidence 999999999999999999998743 456778888999999999999999888764
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=3.8e-21 Score=241.72 Aligned_cols=97 Identities=34% Similarity=0.571 Sum_probs=88.5
Q ss_pred Cccc-hhcCCCCCCChHHHHHHhHHHhhcc---CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 000984 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILK---DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1198)
Q Consensus 511 g~~t-~v~~~g~~lSgGqkqri~lARal~~---~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~ 585 (1198)
|++. .+++...+||||||||++|||+|.+ +|++|||||||++||+...+.+.+.++++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6654 4688889999999999999999997 599999999999999999999999998875 4789999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhhH
Q 000984 586 NADMIAVI------HRGKIVEKGTHSKL 607 (1198)
Q Consensus 586 ~~d~i~~l------~~G~i~~~g~~~~l 607 (1198)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999876
No 433
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.86 E-value=9.5e-22 Score=216.19 Aligned_cols=131 Identities=39% Similarity=0.698 Sum_probs=117.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|+.+ +.++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999642 346999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
++||++.+|+.|++|||.++.. ..+.+++.++++..++++++..+|.|+++.
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 131 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTI 131 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccch
Confidence 9999999999999999998643 356677888888899999999998887654
No 434
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.5e-21 Score=209.28 Aligned_cols=189 Identities=28% Similarity=0.423 Sum_probs=132.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc---CCCCCCeEEECCeecCCcCHHHHh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDPQAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~---~~~~~G~i~i~g~~~~~~~~~~~r 459 (1198)
.|.++|.+.+-. ++..+.|-||.|-.|..+++|||+|-|||||++.|.-- ++|. |
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---I---------------- 321 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---I---------------- 321 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---C----------------
Confidence 377788777653 35588999999999999999999999999999998742 2332 1
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCC-------------------CCCC-HHHHHHH---HHH-------hcHHHHHHhCC
Q 000984 460 KKIGLVSQEPVLFTGSIKDNIAYGK-------------------DDAT-TEEIRVA---TEL-------ANAAKFIDKLP 509 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~Ni~~~~-------------------~~~~-~~~~~~~---~~~-------~~~~~~i~~l~ 509 (1198)
.+-+|-|+..--+.|--+-++-.. .+.+ .+++.++ ++. +.+...+..|
T Consensus 322 -DvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL- 399 (807)
T KOG0066|consen 322 -DVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL- 399 (807)
T ss_pred -ceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc-
Confidence 255666665433332222222000 0000 1122111 111 1122233333
Q ss_pred CCccchhcCCCC-CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-c
Q 000984 510 QGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1198)
Q Consensus 510 ~g~~t~v~~~g~-~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1198)
|.+-.+-++.. .+|||=|-||+|||||+..|-+|.|||||.+||-...-++-+.+..+ .+|.++|+|+-.++.. |
T Consensus 400 -GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VC 476 (807)
T KOG0066|consen 400 -GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVC 476 (807)
T ss_pred -CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHH
Confidence 66777766664 49999999999999999999999999999999999888888888776 4899999999999976 8
Q ss_pred CEEEEEeCCEE
Q 000984 588 DMIAVIHRGKI 598 (1198)
Q Consensus 588 d~i~~l~~G~i 598 (1198)
..|+.||+-++
T Consensus 477 tdIIHLD~qkL 487 (807)
T KOG0066|consen 477 TDIIHLDNQKL 487 (807)
T ss_pred HHHhhhhhhhh
Confidence 88999987665
No 435
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.86 E-value=1.9e-18 Score=193.30 Aligned_cols=267 Identities=19% Similarity=0.325 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 63 IGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142 (1198)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 142 (1198)
+++++.++.++..+..|++++.+++........ ...........++++.++...+.....+...+.+.+...++|.++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666777888888875433221 111111112222222333334444444445577889999999999
Q ss_pred HHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000984 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1198)
Q Consensus 143 ~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~ 222 (1198)
++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++..+|.+++++++..|+..++..
T Consensus 81 ~~~~~~~~~~~~~~~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKN-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHHSHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhh-cccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 999999999999974 9999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1198)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1198)
.+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....+........+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888887777777777777777
Q ss_pred HHHHHHHHHH-HHhCCCCHHHHHHHHHHHHH
Q 000984 303 ALSVWYGGKL-ILEEGYNGGQVVNVMVAVLT 332 (1198)
Q Consensus 303 ~~~~~~g~~l-~~~~~~~~~~~~~~~~~~l~ 332 (1198)
++.+++|..+ +..+.++.|.++.++.....
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~ 270 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQ 270 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 8888889988 88999999988776554443
No 436
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=5.5e-22 Score=218.60 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=129.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee--cC-----CcCHHHHhcceEEEcCCCC--CCcccHHHHHh--
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--LK-----EFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA-- 481 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~--~~-----~~~~~~~r~~i~~v~Q~~~--l~~~ti~~Ni~-- 481 (1198)
.+++|+||||||||||+.+|.+.+.+..|++..++.+ +. ..+.....-.+.+..|++. ++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988877877654421 10 1111122334556556542 34444444321
Q ss_pred -cCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC---------CCCCChHHHHHHhHHHhhcc----CCCEEE
Q 000984 482 -YGKDDATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH---------GTQLSGGQKQRIAIARAILK----DPRILL 545 (1198)
Q Consensus 482 -~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~v~~~---------g~~lSgGqkqri~lARal~~----~~~ill 545 (1198)
+.....+.+++.+.++.+++..+... +++|.-+.+.+. ..+||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 11223556777777777776432111 234443444322 26899999999999999975 489999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhccCEEEEEeC
Q 000984 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
|||||++||+.....+.+.|.++.+ +.|+|+|||+.+.+..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999988765 7899999999998888999999964
No 437
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=211.53 Aligned_cols=214 Identities=22% Similarity=0.414 Sum_probs=173.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeec-CCcCHHHHh-
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-KEFQLQWIR- 459 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~-~~~~~~~~r- 459 (1198)
..++++|++..-. + +.+.+++|||++++||++||.|-.|-|-+-|+.+|.|+..|.+|+|.++|+|+ ...+....|
T Consensus 256 ~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 4589999998743 2 24689999999999999999999999999999999999999999999999997 566776665
Q ss_pred cceEEEcCCCC----CCcccHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhC---CCCccchhcCCCCCC
Q 000984 460 KKIGLVSQEPV----LFTGSIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKL---PQGIDTLVGEHGTQL 523 (1198)
Q Consensus 460 ~~i~~v~Q~~~----l~~~ti~~Ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l---~~g~~t~v~~~g~~l 523 (1198)
..++|||.|.+ ....|+.||+.++.-. .+..++.+..+ +.++.+ +.+.++ ...+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~----~a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDA----PARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCc----chhhc
Confidence 57999999984 5578999999976432 11233332222 223332 223333 34579
Q ss_pred ChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEe
Q 000984 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1198)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~ 601 (1198)
|||+.||+-+||-+.++|++||...||-+||..+.+.|.+.|.+.. +++.|++|+-.++.+. .||||.||.+|+++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999988887765 5789999999999875 5999999999999987
Q ss_pred cChhh
Q 000984 602 GTHSK 606 (1198)
Q Consensus 602 g~~~~ 606 (1198)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 76654
No 438
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.85 E-value=2.3e-21 Score=213.23 Aligned_cols=133 Identities=61% Similarity=0.986 Sum_probs=118.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++|++++|++..+.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997432346999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++||++.+|+.|++||+.++.. ..+.+++.++++..++.+++..+|.|+++.+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceee
Confidence 9999999999999999998743 4466778888888899999999998887653
No 439
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.7e-21 Score=216.44 Aligned_cols=126 Identities=27% Similarity=0.470 Sum_probs=112.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+.+|++. .||+|+||+|+.||.++|||||||||||++++|.||.+|++|+|+|||.|++++++++ ++|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999999986 899
Q ss_pred ceeccccccccc-cHHHHHhcCCCC-----CCCHHHHHHHHHHcchHHHHHhccccc
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~~-----~~tdeei~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
++|+|+.-||.- |++|||.|+-.. +--++++.++++.-++.+..++.|..+
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 999999999955 999999998421 123567899999999999999988654
No 440
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.85 E-value=3.6e-21 Score=209.11 Aligned_cols=134 Identities=37% Similarity=0.659 Sum_probs=120.2
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+|+++|++++|+++ ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++..++...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++++||++.+|..|++||+.++.. ..+.+++.++++..++.+.+.++|.|++|.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 134 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQI 134 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhcccccccee
Confidence 999999999999999999988632 3456778889999999999999998888763
No 441
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.4e-21 Score=212.97 Aligned_cols=131 Identities=44% Similarity=0.713 Sum_probs=119.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ +.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 579999999963 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+++|++.+|++|++||+.++.. ..+++++.++++.+++.+.+..+|.|+++.+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 131 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchh
Confidence 9999999999999999998743 4677888899999999999999999988753
No 442
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.2e-21 Score=210.71 Aligned_cols=131 Identities=50% Similarity=0.819 Sum_probs=118.1
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++|++++|++. +.++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999643 235999999999999999999999999999999999999999999999999999888889999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
++||++.+|+.|++||+.++.. ..+.+++.++++..+++++++.+|.|+++.
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 131 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTV 131 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCccee
Confidence 9999999999999999998743 456677888889999999999999888764
No 443
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.2e-21 Score=206.41 Aligned_cols=190 Identities=31% Similarity=0.448 Sum_probs=148.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.+-+.||+|.||+ ..|.+++++|-|.--..++||||+|.|||||+++|.|.++|++|+.+-+- |-+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4678999999986 36899999999999999999999999999999999999999999886553 4579
Q ss_pred EEEcCCCC--CC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPV--LF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~--l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
|+..|... |- ..|-.|-+.-++ +...++.++++...++.. .-+|. ....||||||.|++||--.++
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~s-------HAHTi---kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLAS-------HAHTI---KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhh-------ccceE---eeeecCCcchHHHHHHHHhcC
Confidence 99988762 22 346666665332 345566666665554432 12232 234699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCE-EEEEeCCEE
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADM-IAVIHRGKI 598 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~-i~~l~~G~i 598 (1198)
.||||||||||.+||.++-..+-++|.++ +..||+|+|+-..+...|. ..|+++-.|
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999999999999999887 4579999999988876543 344444333
No 444
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.85 E-value=2.7e-21 Score=216.01 Aligned_cols=134 Identities=29% Similarity=0.517 Sum_probs=116.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+|+||+.+|. +..+|+||||+|++||.+++.|||||||||++++|.||..|++|+|.|||.||.+++.+ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 34699999999999999999999999999999999999999999999999999998886 5899
Q ss_pred ceeccccccc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcchHHHHHhccc----cccceeeeee
Q 000984 1122 GLVSQEPVLF-NDTIRANIAYGKG--GDATE----AEIQAASEMANAHKFICSLQQ----VRTSRLLLVM 1180 (1198)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g~~--~~~td----eei~~Al~~A~l~dfI~~LP~----g~dt~v~~~~ 1180 (1198)
++|+|+.-|| +-||+|||.||-. ....+ +.+.++++.+++.+|-.+.|. |-.-+|||.-
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHH
Confidence 9999999999 7799999999943 11232 368899999999998777664 5556666543
No 445
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3e-21 Score=205.16 Aligned_cols=129 Identities=27% Similarity=0.442 Sum_probs=108.9
Q ss_pred EEEeeeeEECCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHH
Q 000984 1043 IELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~--~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~L 1117 (1198)
|+|+|||..|+.. ....+|+||||+|++||..||||+||||||||++++-|+-+|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 1246999999999999999999999999999999999999999999999998887775 5566
Q ss_pred Hhhcceecccccccc-ccHHHHHhcCCC-CCCCHH----HHHHHHHHcchHHHHHhcccc
Q 000984 1118 RQQMGLVSQEPVLFN-DTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQV 1171 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~tde----ei~~Al~~A~l~dfI~~LP~g 1171 (1198)
|++|++|+|++.|++ .|+.+|++|.-. ...+.+ .+.+.++.+++.|.-.+-|..
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~q 141 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQ 141 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchh
Confidence 789999999999997 899999998311 123344 456788999999888776653
No 446
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=5.5e-21 Score=204.98 Aligned_cols=119 Identities=30% Similarity=0.451 Sum_probs=107.0
Q ss_pred EEEeeeeEECCCCCC--ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~--~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+++||+++|++..+ .++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999974311 3699999999999999999999999999999999999999999999999 6
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|||+|.+|++|++||+.++. ..++++++++++.+++.+++..+|.|+++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 121 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEI 121 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCccccee
Confidence 99999999999999999999863 3456778899999999999999999988765
No 447
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=9.3e-21 Score=212.52 Aligned_cols=194 Identities=27% Similarity=0.374 Sum_probs=160.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..+++.+|+|.|+.. +.+.+.+++++++.-+++++||++|+||||+++++.+...|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 458999999999643 23789999999999999999999999999999999999999999998887 678
Q ss_pred eEEEcCCCCCC-cccH--HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC-CCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVLF-TGSI--KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti--~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g-~~lSgGqkqri~lARal 537 (1198)
|+|-.|...=+ +-.+ -|-..-..|-.+++++++.|...++... +.... ..||||||-|+++|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~-----------la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGE-----------LALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCch-----------hhhccccccCCcchhHHHHHHHh
Confidence 99999976422 2222 2222212344578999988877655443 33333 56999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
+.+|.+|+|||||+.||.++-..+-++|+.+ +.-||+|||+.+++.. |+.+.+.++|++..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999988888899876 4579999999999986 99999999999975
No 448
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=2.4e-21 Score=208.26 Aligned_cols=136 Identities=32% Similarity=0.556 Sum_probs=116.6
Q ss_pred cccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999742 236999999999999999999999999999999999999999999999999999999989999
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||+|.+|++|+++||.+.. ..+++++.++++ ++..+..|+.|...++++..+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999998752 356677777776 455666777776666665543
No 449
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=1.6e-18 Score=197.26 Aligned_cols=341 Identities=13% Similarity=0.119 Sum_probs=218.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000984 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT-ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1198)
Q Consensus 824 ~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1198)
.|+++|++..-..+......++...+.++....-++. ..|+-...++..+.+-.++...+++.+.+..-+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 4899999888777776666666655554444433333 345544444455554555556666666666666677777776
Q ss_pred HHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcC
Q 000984 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV----EDGKAT 978 (1198)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~----~~g~~t 978 (1198)
-.-.+...|...|.-|+.++.+...-+...++..+.......+.-...-+..++-++..++...+.+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 6666777888899999998888777776666655544333332222222222222222222111111111 233455
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCC-------------CCC-------CCCC
Q 000984 979 FSDVFKVFFS----LTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID-------------PSD-------ESGT 1034 (1198)
Q Consensus 979 ~g~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~-------------~~~-------~~~~ 1034 (1198)
..++...+.. ...+...++.+.....++.+...-..||.++.+.-.+.. .+. ++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 5555544332 223344445555555566666666777776654211100 000 0000
Q ss_pred cccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE--CCcccCCC
Q 000984 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL--DGVEIQKL 1112 (1198)
Q Consensus 1035 ~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I--DG~dI~~i 1112 (1198)
...+..-.|+|++|++.=|++ +....+|+||+|+.|+.+-|+||||||||+|++.|.++|+..+|+|.- ||-+
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 111223469999999999875 444677899999999999999999999999999999999999999875 4433
Q ss_pred ChHHHHhhcceeccccccccccHHHHHhcC------CCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYG------KGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1113 ~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g------~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+.+=+|||-|++=.||+||-+-|- ....++|++|.+-++.+++.+.++. .+|+|+++
T Consensus 501 ------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~ 563 (659)
T KOG0060|consen 501 ------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQV 563 (659)
T ss_pred ------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchh
Confidence 447899999999999999999873 0124899999999999999887766 58998765
No 450
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.7e-21 Score=213.85 Aligned_cols=129 Identities=24% Similarity=0.498 Sum_probs=110.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999632123599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ceecccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHhccc
Q 000984 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~LP~ 1170 (1198)
++|+|+| .++..|++|||.++... ..+ ++.+.++++..++.++....|.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA 139 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc
Confidence 9999998 46778999999986321 123 3457889999999988876654
No 451
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.2e-21 Score=194.48 Aligned_cols=135 Identities=33% Similarity=0.522 Sum_probs=114.3
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~LR 1118 (1198)
-|+++||+-+||+ +..+|+||||+|++||.|||+|+||||||||++.|.|+.||++|+|.++|.++..++ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999999988 77888
Q ss_pred hhcceeccccccccc-cHHHHHhcCCCC----------CCC---HHHHHHHHHHcchHHHH----Hhccccccceeee
Q 000984 1119 QQMGLVSQEPVLFND-TIRANIAYGKGG----------DAT---EAEIQAASEMANAHKFI----CSLQQVRTSRLLL 1178 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~~~----------~~t---deei~~Al~~A~l~dfI----~~LP~g~dt~v~~ 1178 (1198)
++||+|+|.+-|-.. |+.+|+..|+.+ -.+ .....+|++.+++.|+. ..|..|-.-+|++
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 999999999998755 899999877432 123 34567889999998876 4466666655554
No 452
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.84 E-value=5.9e-21 Score=204.13 Aligned_cols=136 Identities=27% Similarity=0.455 Sum_probs=116.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
++.+|++|+|++ .++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++.+++-++++
T Consensus 3 L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 3 LEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 789999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc-ccccccHHHHHhcCCCC---------CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1123 LVSQEP-VLFNDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp-~LF~gTIreNI~~g~~~---------~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
||||++ .-|.-|++|=+.+|+.+ +.+++.+.+|++..++.++..+ |.+|-.-.|.+.|+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 999996 56788999999999653 1123358889999999988654 56665555555443
No 453
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=9.2e-21 Score=203.21 Aligned_cols=138 Identities=33% Similarity=0.590 Sum_probs=119.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCChHHHHhh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQ 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~-~i~l~~LR~~ 1120 (1198)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.+++.|++|.|.+||.|++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 47999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred cceecccc--ccccccHHHHHhcCCCC-CCCHHH----HHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1121 MGLVSQEP--VLFNDTIRANIAYGKGG-DATEAE----IQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp--~LF~gTIreNI~~g~~~-~~tdee----i~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+++|+|+| .+|..||.|.++||+.+ ..+.+| +.+|++.++++++-.. |.+|-.-+|++.-+
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHH
Confidence 99999999 89999999999999542 344544 6778999999766544 55666666665543
No 454
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.84 E-value=6.3e-21 Score=206.51 Aligned_cols=137 Identities=28% Similarity=0.465 Sum_probs=112.2
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1198)
|+++||+++|++. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23599999999999999999999999999999999999999999999999999877643 4788
Q ss_pred hcceecccccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~-----~~~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++++|||++.+|. .|++||+.++. ..+..++++.++++..++.++... |+.|-..+++++.
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 9999999999986 59999998741 111234678899999999876654 5555555555544
No 455
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=2.1e-20 Score=185.54 Aligned_cols=226 Identities=24% Similarity=0.360 Sum_probs=171.8
Q ss_pred EEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCeEEECCeecCCcCHHHHh
Q 000984 385 ELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIR 459 (1198)
Q Consensus 385 ~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~r 459 (1198)
.++|++..+.... ...+.+++|++.+.||+-++||.||||||-+.++|+|...- +.-+.++|++|+-++++.+.|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 4455555543322 24588999999999999999999999999999999997643 456778899999999988877
Q ss_pred c----ceEEEcCCCCCC---cccH----HHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC
Q 000984 460 K----KIGLVSQEPVLF---TGSI----KDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1198)
Q Consensus 460 ~----~i~~v~Q~~~l~---~~ti----~~Ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g 520 (1198)
+ .|++++|+|.-+ +.+| -+||-+-.-. -...+..+.+..+++.|-- .......
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk--------DIM~SYP 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DIMRSYP 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH--------HHHHhCc
Confidence 4 588999999754 2333 3454321000 0123333444555543311 0112334
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1198)
..|--|+-|++.||-|+..+|++||-||||.++|+.|..+|++.+..+- ++.|+++++|++..+.. ||+|-||--|+
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQ 236 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecc
Confidence 5677889999999999999999999999999999999999999987765 35788999999999976 99999999999
Q ss_pred EEEecChhhHhcCCCchhHHH
Q 000984 598 IVEKGTHSKLVEDPEGAYSQL 618 (1198)
Q Consensus 598 i~~~g~~~~l~~~~~~~~~~~ 618 (1198)
-+|.+..+++++.+...|.+.
T Consensus 237 ~~ESa~~e~l~~~PhHPYTqA 257 (330)
T COG4170 237 TVESAPSEELVTMPHHPYTQA 257 (330)
T ss_pred cccccchhHHhcCCCCchHHH
Confidence 999999999999887777654
No 456
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.83 E-value=8.6e-21 Score=216.57 Aligned_cols=138 Identities=20% Similarity=0.356 Sum_probs=112.2
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR 1118 (1198)
|+|+||+++|+++. ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 79999999996321 246999999999999999999999999999999999999999999999999999887655 57
Q ss_pred hhcceecccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHhcc----ccccceeeeee
Q 000984 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQ----QVRTSRLLLVM 1180 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~LP----~g~dt~v~~~~ 1180 (1198)
++|++|||++.||. .|++||+.++.. ...+ ++.+.++++.+++.++..+.| .|-.-+|++..
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IAR 153 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIAR 153 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 89999999999995 799999997521 1122 345778899999987766554 44444444443
No 457
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.83 E-value=9.3e-21 Score=185.03 Aligned_cols=123 Identities=29% Similarity=0.485 Sum_probs=107.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|.+++|.|+|..-+ =.++++|++||+|||+||||||||||+||+.+|..|++|+|+|+|+|....++. ++-+|
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999996432 368899999999999999999999999999999999999999999999888775 57899
Q ss_pred eeccccccc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcchHHHHHhccccc
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~-----~tdeei~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
+++||.-|| +=||++||.+|..|. ...+.+..|+.++++.+|...||..+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 999999999 559999999996442 23466899999999999999999744
No 458
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.4e-20 Score=210.54 Aligned_cols=127 Identities=29% Similarity=0.540 Sum_probs=110.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|+. +.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 23599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ceecccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHhccc
Q 000984 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~LP~ 1170 (1198)
++|||+| .+|..|+++||.++... ..+ ++++.++++..++.++..+.|.
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 137 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY 137 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh
Confidence 9999998 68899999999986321 122 3567888999999887665554
No 459
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=1.7e-20 Score=192.69 Aligned_cols=136 Identities=28% Similarity=0.430 Sum_probs=111.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR 1118 (1198)
-|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+|+|.||.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999964 4699999999999999999999999999999999999999999999999999998764 569
Q ss_pred hhcceeccccccccc-cHHHHHhcCCC--CCCCHHHHHH----HHHHcchHHH-HHh----ccccccceeeeee
Q 000984 1119 QQMGLVSQEPVLFND-TIRANIAYGKG--GDATEAEIQA----ASEMANAHKF-ICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~~--~~~tdeei~~----Al~~A~l~df-I~~----LP~g~dt~v~~~~ 1180 (1198)
+++|+++|..-||+. ||+||+.|--. .+.+++++++ -++.+++..- -+. |..|+.-+++|.=
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 999999999999966 99999987211 1345555544 4677887766 333 4456666666543
No 460
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=8.4e-20 Score=201.33 Aligned_cols=171 Identities=23% Similarity=0.458 Sum_probs=132.8
Q ss_pred cccceeEEE-----eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC-CCCcc
Q 000984 401 IFSGFSISI-----SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG 474 (1198)
Q Consensus 401 ~l~~i~l~i-----~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~~ 474 (1198)
.+.+..|++ ..||.++++||||-||||++++|.|.++|++|. ..+ -+++|=||-- .-|+|
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCC
Confidence 455666655 457899999999999999999999999999998 212 1799999953 24899
Q ss_pred cHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCC
Q 000984 475 SIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1198)
Q Consensus 475 ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1198)
||++-+.-..+. .....++. +.++ |-.++..+.....+||||+.||+|+|-||.+++|+|+||||+|.|
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~--------ei~~--pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKT--------EIVK--PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred cHHHHHHHhhhhhcccchhHH--------hhcC--ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 999887643322 22222221 1111 235555666677789999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC
Q 000984 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1198)
|.+..-.+-+.|++.. .++|.++|-|++-.+.. +||++|.++
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9998877788887765 46899999999999887 899999863
No 461
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=3.7e-20 Score=200.73 Aligned_cols=129 Identities=19% Similarity=0.317 Sum_probs=112.7
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHHHh
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQ 1119 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l----~~LR~ 1119 (1198)
.+.|+.|+|+.+ .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999743 469999999999999999999999999999999999999999999999999877653 34678
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
.+++++|+|.+|+.|++|||.++. ..++++..++++..++.+++..+|.|+++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCc
Confidence 899999999999999999999863 3456777888999999999998888887753
No 462
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.4e-20 Score=195.16 Aligned_cols=130 Identities=28% Similarity=0.414 Sum_probs=110.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.+++++|+.+|++ ..||+||||+|++||.|+||||||||||||++++.||..|++|+|.+||.++..-. ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4899999999974 46999999999999999999999999999999999999999999999999985543 578
Q ss_pred ceecccccccc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcchHHHHHhccc----cccceeeee
Q 000984 1122 GLVSQEPVLFN-DTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQ----VRTSRLLLV 1179 (1198)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~~~-----~tdeei~~Al~~A~l~dfI~~LP~----g~dt~v~~~ 1179 (1198)
+||+|++.||. -|++||+.+|.... -..+.+.++++.+++.+|-.+.|. |..-+|++.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHH
Confidence 99999999995 69999999874211 123468889999999999998886 445555543
No 463
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.7e-20 Score=211.70 Aligned_cols=139 Identities=21% Similarity=0.352 Sum_probs=109.7
Q ss_pred cEEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC-------
Q 000984 1042 EIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------- 1112 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i------- 1112 (1198)
-|+++||+|+|+... +.++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 499999999997421 23699999999999999999999999999999999999999999999999999753
Q ss_pred ---------ChHHHHhhcceecccc--ccccccHHHHHhcCCC-CCCCHHH----HHHHHHHcchH-HHHH----hcccc
Q 000984 1113 ---------QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEAE----IQAASEMANAH-KFIC----SLQQV 1171 (1198)
Q Consensus 1113 ---------~l~~LR~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~~tdee----i~~Al~~A~l~-dfI~----~LP~g 1171 (1198)
+...+|++|++|+|+| .+|++|++|||.++.. ...++++ +.++++..++. ++.. .|+.|
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 180 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGG 180 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHH
Confidence 4567899999999998 7999999999998732 1233333 44566777774 3433 35555
Q ss_pred ccceeeeee
Q 000984 1172 RTSRLLLVM 1180 (1198)
Q Consensus 1172 ~dt~v~~~~ 1180 (1198)
-.-++++..
T Consensus 181 qkqRvaiAr 189 (320)
T PRK13631 181 QKRRVAIAG 189 (320)
T ss_pred HHHHHHHHH
Confidence 555555443
No 464
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=5.3e-20 Score=194.96 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=117.7
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-CHHHHhcceEEEcCCCCCCcccHHHHH
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~~i~~v~Q~~~l~~~ti~~Ni 480 (1198)
++++++++.+| +.+|+||||||||||+.+|.-.+....+ ....|....++ ....-...|.+.+|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677787777 7899999999999999998744322211 00112111110 00111356888888765554 2
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh----ccCCCEEEEeCCCCCCCHH
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal----~~~~~illlDe~ts~lD~~ 556 (1198)
+ ..... ...+.++++. .....+...+||+|||||++||||+ +.+|+++||||||++||..
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1122233333 2223455678999999999999999 6999999999999999999
Q ss_pred hHHHHHHHHHHHhC----CCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 557 SEKVVQEALDRIMV----NRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 557 ~~~~i~~~i~~~~~----~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
+...+.+.|.+..+ ++|+|++||+++.+...|+|-+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999998887643 258899999999999999999998653
No 465
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.3e-20 Score=206.12 Aligned_cols=135 Identities=27% Similarity=0.429 Sum_probs=112.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCCeEEECCcccCCCChHHHH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD---PDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd---p~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3889999999963 359999999999999999999999999999999999985 6899999999999998888899
Q ss_pred hhcceeccccccccccHHHHHhcCCC-------CCCCHHHHHHHHHHcchHHHH--------Hhccccccceeeee
Q 000984 1119 QQMGLVSQEPVLFNDTIRANIAYGKG-------GDATEAEIQAASEMANAHKFI--------CSLQQVRTSRLLLV 1179 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~-------~~~tdeei~~Al~~A~l~dfI--------~~LP~g~dt~v~~~ 1179 (1198)
++|+++||+|.+|..|++||+.++.. ....++++.++++..++++++ .+|..|-..++++.
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 99999999999999999999987521 011234577889999986544 33555555555544
No 466
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.4e-20 Score=204.64 Aligned_cols=136 Identities=28% Similarity=0.434 Sum_probs=111.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1198)
|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 359999999999999999999999999999999999999999999999999988764 57889
Q ss_pred hcceeccccccccc-cHHHHHhcCCC--CCCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFND-TIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~--~~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+|++|||++.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+ |..|-.-+++++.+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999986 99999987521 1123 2356778888888776544 56666666655443
No 467
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.8e-20 Score=203.80 Aligned_cols=139 Identities=24% Similarity=0.356 Sum_probs=111.6
Q ss_pred cEEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---H
Q 000984 1042 EIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---L 1117 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---L 1117 (1198)
-|+++||+++|+++. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|++||.|+.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997421 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred H-hhcceeccccccccc-cHHHHHhcCC----C-CCCCHHHHHHHHHHcchHHHHH----hccccccceeeeee
Q 000984 1118 R-QQMGLVSQEPVLFND-TIRANIAYGK----G-GDATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVM 1180 (1198)
Q Consensus 1118 R-~~IsiV~Qdp~LF~g-TIreNI~~g~----~-~~~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~ 1180 (1198)
| +++++|||++.+|.+ |++||+.++. . .+..++++.++++..++.++.. +|..|-.-+++++.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 3 679999999999975 9999998631 0 1112346788899998876654 45556555555544
No 468
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=3e-20 Score=208.37 Aligned_cols=127 Identities=29% Similarity=0.544 Sum_probs=110.2
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+
T Consensus 6 l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 8999999999642 346999999999999999999999999999999999999999999999999999888888899999
Q ss_pred eecccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHhccc
Q 000984 1123 LVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1123 iV~Qdp--~LF~gTIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~LP~ 1170 (1198)
+|||+| .+++.|++|||.++... ..+ ++++.++++..++.+++...|.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH 139 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc
Confidence 999998 57788999999875211 123 3457888999999998887665
No 469
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.82 E-value=2.4e-20 Score=203.65 Aligned_cols=136 Identities=34% Similarity=0.523 Sum_probs=112.5
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCCCeEEECCcccCCCC--hH
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITLDGVEIQKLQ--LK 1115 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~y-----dp~~G~I~IDG~dI~~i~--l~ 1115 (1198)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998877 67
Q ss_pred HHHhhcceeccccccccccHHHHHhcCCCC-C-C----CHHHHHHHHHHcchHHHHH------hccccccceeeeeec
Q 000984 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGG-D-A----TEAEIQAASEMANAHKFIC------SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~-~-~----tdeei~~Al~~A~l~dfI~------~LP~g~dt~v~~~~~ 1181 (1198)
.+|+++++|||++.+|..|++||+.++... . . .++++.++++..++.+... .|..|-..+++++.+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 789999999999999999999999875211 1 1 2456788899988877654 455555555555443
No 470
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.82 E-value=3.9e-20 Score=200.70 Aligned_cols=138 Identities=22% Similarity=0.433 Sum_probs=112.2
Q ss_pred EEEeeeeEECCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~-~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
|+++||+++|++... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974311 169999999999999999999999999999999999999999999999999976 456788999
Q ss_pred ceeccccccccc-cHHHHHhcCCC-CC----CCHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG-GD----ATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-~~----~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+++||+|.+|.+ |++||+.+... .. ..++++.++++..++.++. .+|+.|-..+++++.+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHH
Confidence 999999999985 99999976311 01 1245678889998886654 4566676666665544
No 471
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.5e-20 Score=203.06 Aligned_cols=137 Identities=30% Similarity=0.572 Sum_probs=114.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+..++...+|+++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ceeccccccccccHHHHHhcCCC-CCCCHHHHHHHHHHcchH-HHH----Hhccccccceeeeeec
Q 000984 1122 GLVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAH-KFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~~-~~~tdeei~~Al~~A~l~-dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+++||++.+|+.|++||+.++.. ....++++.++++..++. ++. ..|..|-..++++..+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999987632 112345678888888884 443 4466666666655443
No 472
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.82 E-value=3.6e-20 Score=200.41 Aligned_cols=137 Identities=28% Similarity=0.447 Sum_probs=113.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1198)
|+++|++++|++ +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23699999999999999999999999999999999999999999999999999887643 4788
Q ss_pred hcceecccccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~-----~~~~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
+++++||+|.+|. .|++||+.++. .+...+++++++++..++.++.. +|..|...+++++.+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 9999999999995 69999998741 11123467889999999987765 455565666665543
No 473
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.7e-20 Score=206.36 Aligned_cols=137 Identities=27% Similarity=0.552 Sum_probs=112.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++|++++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred ceecccc--ccccccHHHHHhcCCCC-CCCHH----HHHHHHHHcchHHHHHhcc----ccccceeeee
Q 000984 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DATEA----EIQAASEMANAHKFICSLQ----QVRTSRLLLV 1179 (1198)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~~tde----ei~~Al~~A~l~dfI~~LP----~g~dt~v~~~ 1179 (1198)
++|||+| .++..|++|||.++... ..+.+ .+.++++..++.++..+.| .|-.-+++++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH
Confidence 9999998 46678999999875211 12333 3667788889988776644 4444444443
No 474
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=3.4e-20 Score=199.01 Aligned_cols=133 Identities=27% Similarity=0.471 Sum_probs=108.7
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcce
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
+++||+++|++. .++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.. ...|++|++
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999631 369999999999999999999999999999999999999999999999999864 467789999
Q ss_pred ecccc--ccccccHHHHHhcCCCC-CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1124 VSQEP--VLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1124 V~Qdp--~LF~gTIreNI~~g~~~-~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+||+| .+|..|++||+.++... ...++++.++++..++.++..+ |+.|..-+++++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 140 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA 140 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHH
Confidence 99998 47889999999875321 1234578999999999877655 45555555555443
No 475
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.1e-20 Score=206.03 Aligned_cols=140 Identities=25% Similarity=0.458 Sum_probs=114.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|++....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743234599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ceecccc--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1122 GLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~-~~~tde----ei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
++|||+| .++..|+.|||.++.. ...+++ ++.++++..++.++..+ |..|-.-++++..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 9999998 4778999999987521 123333 45778888888887665 44455555555443
No 476
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.2e-20 Score=208.12 Aligned_cols=137 Identities=26% Similarity=0.455 Sum_probs=109.3
Q ss_pred EEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC----ChHH
Q 000984 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKW 1116 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i----~l~~ 1116 (1198)
|+++||+++|++.+ ..++|+||||+|++||++||+|++|||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996422 13699999999999999999999999999999999999999999999999999764 3467
Q ss_pred HHhhcceecccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcchH-HH----HHhccccccceeeee
Q 000984 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAH-KF----ICSLQQVRTSRLLLV 1179 (1198)
Q Consensus 1117 LR~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~~t----deei~~Al~~A~l~-df----I~~LP~g~dt~v~~~ 1179 (1198)
+|++|++|||+| .+|..|++|||.++... ..+ ++.+.++++..++. ++ +..|..|-.-+++++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 899999999998 68999999999986321 123 23456777888885 44 344555555555443
No 477
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.81 E-value=3.7e-20 Score=200.91 Aligned_cols=139 Identities=29% Similarity=0.405 Sum_probs=112.6
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH----H
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW----L 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~----L 1117 (1198)
|+++||+++|++.. ..++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.+++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998877433 4
Q ss_pred Hhhcceeccccccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1118 RQQMGLVSQEPVLFND-TIRANIAYGKG-GDA----TEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
|+++++|||++.+|.+ |++||+.++.. ... .++++.++++..++.++. .+|..|..-+++++.+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA 154 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence 6789999999999986 99999987521 111 235678889988887654 4566777667766554
No 478
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.3e-20 Score=209.02 Aligned_cols=137 Identities=26% Similarity=0.491 Sum_probs=108.9
Q ss_pred EEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----CChHH
Q 000984 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKW 1116 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~----i~l~~ 1116 (1198)
|+|+||+|+|+... ..++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1259999999999999999999999999999999999999999999999999963 34667
Q ss_pred HHhhcceecccc--ccccccHHHHHhcCCCC-CCCH----HHHHHHHHHcchH-HHHH----hccccccceeeee
Q 000984 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DATE----AEIQAASEMANAH-KFIC----SLQQVRTSRLLLV 1179 (1198)
Q Consensus 1117 LR~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~~td----eei~~Al~~A~l~-dfI~----~LP~g~dt~v~~~ 1179 (1198)
+|+++++|+|+| .+|..|+.|||.++... ..+. +++.++++..++. ++.. .|+.|-.-++++.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 899999999998 79999999999987321 1222 3467778888884 4543 3445554444443
No 479
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.7e-20 Score=207.66 Aligned_cols=137 Identities=29% Similarity=0.539 Sum_probs=110.5
Q ss_pred EEEeeeeEECCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC--hHHHH
Q 000984 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ--LKWLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~--l~~LR 1118 (1198)
|+++||+++|+... ..++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 79999999997421 136999999999999999999999999999999999999999999999999998754 45789
Q ss_pred hhcceecccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcchH--HH----HHhccccccceeeee
Q 000984 1119 QQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAH--KF----ICSLQQVRTSRLLLV 1179 (1198)
Q Consensus 1119 ~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~--df----I~~LP~g~dt~v~~~ 1179 (1198)
++|++|||+| .+|+.|++|||.++.. ...+. +.+.++++..++. ++ +..|..|-..+++++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence 9999999998 5889999999987631 12333 3467888888885 43 344555555555544
No 480
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.81 E-value=4.8e-20 Score=199.48 Aligned_cols=136 Identities=28% Similarity=0.442 Sum_probs=109.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1198)
|+++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999632 359999999999999999999999999999999999999999999999999987764 35788
Q ss_pred hcceecccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++++|||++.+|. .|++||+.++.. ... .++++.++++..++.+...+ |..|-.-++++..
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHH
Confidence 9999999999998 499999987521 011 23467888888888776654 4445544454443
No 481
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=5.1e-20 Score=198.66 Aligned_cols=134 Identities=23% Similarity=0.405 Sum_probs=110.4
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+|+|++ .++|+|+||+|++| .+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 35999999999999 99999999999999999999999999999999999998877 78899999
Q ss_pred eeccccccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKG-GDA----TEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|||+|.+|.+ |++||+.+... ... .++++.++++..++.++. .+|+.|-..+++++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHH
Confidence 99999999986 99999986310 011 135678889998887654 4456666666655443
No 482
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.81 E-value=5.6e-20 Score=199.78 Aligned_cols=137 Identities=21% Similarity=0.349 Sum_probs=111.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999642 146999999999999999999999999999999999999999999999999997653 67788999
Q ss_pred eeccccccc-cccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|+|++.+| +.|+++|+.++.. ... .++++.++++..++.+.. ..|+.|-..++++..+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 999999999 6799999986411 011 134577888888886654 4466676666666544
No 483
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.7e-20 Score=204.55 Aligned_cols=136 Identities=27% Similarity=0.444 Sum_probs=114.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ceeccccccccc-cHHHHHhcCCC---------CCCCHHHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG---------GDATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~---------~~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++|||++.+|.+ |++||+.++.. +...++++.++++..++.+++.. |..|-.-+++++.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 999999877655 99999997521 01234568889999999887665 4455555555443
No 484
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=6.6e-20 Score=197.33 Aligned_cols=134 Identities=21% Similarity=0.358 Sum_probs=112.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999998765 56788999
Q ss_pred eeccccccc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKG-GDATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|||++.+| +.|++|||.++.. ...+++++.++++..++.+.. ..|+.|-..+++++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHH
Confidence 999999887 5799999986421 123567888999999886654 4577777777766554
No 485
>PRK10908 cell division protein FtsE; Provisional
Probab=99.81 E-value=7.6e-20 Score=198.90 Aligned_cols=136 Identities=28% Similarity=0.403 Sum_probs=109.4
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR~ 1119 (1198)
|+++||+++|+. +.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 236999999999999999999999999999999999999999999999999998876544 788
Q ss_pred hcceecccccc-ccccHHHHHhcCCC-CCCCH----HHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1120 QMGLVSQEPVL-FNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1120 ~IsiV~Qdp~L-F~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++++|||+|.+ +..|++|||.++.. ...++ +++.++++..++.+...+ |+.|-..+++++.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 99999999987 57799999987521 11222 346678888888776544 5555555555443
No 486
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=8e-20 Score=200.37 Aligned_cols=139 Identities=24% Similarity=0.379 Sum_probs=112.5
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHH
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~---~LR 1118 (1198)
|+++||+++|+++. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 12699999999999999999999999999999999999999999999999999887654 358
Q ss_pred hhcceecccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+++++|||++.+|. .|++|||.++.. ... .++++.++++..++.+...+ |..|-.-+++++.+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 89999999999997 699999986421 011 24567889999999877654 55565556655543
No 487
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=6.6e-20 Score=197.88 Aligned_cols=137 Identities=33% Similarity=0.570 Sum_probs=111.5
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcce
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
+++||+++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+|++|++
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999642 2469999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ecccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1124 VSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1124 V~Qdp--~LF~gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+||++ .+|..|++||+.++.. ...+ ++++.++++..++.+++.+ |..|-.-+++++.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 99998 4678999999987421 0112 3456778888888776654 55565555555443
No 488
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=1.4e-19 Score=189.90 Aligned_cols=137 Identities=31% Similarity=0.442 Sum_probs=109.0
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHH
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l---~~LR 1118 (1198)
|+++||+..|.... ..++|+|+||+|++||.|||+||||||||||+++|-++-.|++|.|.|+|.|+..++- ..+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 1369999999999999999999999999999999999999999999999999999984 4444
Q ss_pred -hhcceecccccccc-ccHHHHHhc----CCCCC-CCHHHHHHHHHHcchHHHHH-----hccccccceeeee
Q 000984 1119 -QQMGLVSQEPVLFN-DTIRANIAY----GKGGD-ATEAEIQAASEMANAHKFIC-----SLQQVRTSRLLLV 1179 (1198)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~----g~~~~-~tdeei~~Al~~A~l~dfI~-----~LP~g~dt~v~~~ 1179 (1198)
++||+|+|+..|+. -|++|||.+ ..... ...+.+.+.++..++.+... .|..|-.-+||+.
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 57999999999875 599999983 21111 12455677788888885555 5556666666543
No 489
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.3e-19 Score=203.69 Aligned_cols=129 Identities=28% Similarity=0.489 Sum_probs=109.9
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCcccCCCChHHH
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~---G~I~IDG~dI~~i~l~~L 1117 (1198)
+.|+++|++|+|++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2359999999999999999999999999999999999999987 899999999988888888
Q ss_pred Hhhcceecccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcchHHHHHhccc
Q 000984 1118 RQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1118 R~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~dfI~~LP~ 1170 (1198)
|++|++|||+| .+|+.|++|||.++.. ...+. +++.++++..++.++..+.|.
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 142 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPA 142 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcc
Confidence 99999999998 4678999999987621 12333 347888999999888776553
No 490
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=9.3e-20 Score=204.52 Aligned_cols=126 Identities=23% Similarity=0.439 Sum_probs=107.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
++++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eecccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHhccc
Q 000984 1123 LVSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1198)
Q Consensus 1123 iV~Qdp--~LF~gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~LP~ 1170 (1198)
+|||+| .+|+.|+++||.++.. ...+ ++.+.++++..++.++..+.|.
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH 136 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcc
Confidence 999998 4888999999987521 0122 3457888999999887665443
No 491
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.1e-19 Score=193.93 Aligned_cols=134 Identities=20% Similarity=0.367 Sum_probs=109.8
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 359999999999999999999999999999999999999999999999999975 3467889999
Q ss_pred eeccccccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHH----Hhccccccceeeeee
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVM 1180 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~ 1180 (1198)
++||++.+| ..|+++|+.++......++.+.++++..++.+.. ..|+.|-..+++++.
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~lar 140 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLR 140 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHH
Confidence 999999986 5799999997632122345677888877775544 346666666655544
No 492
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1e-19 Score=200.79 Aligned_cols=137 Identities=30% Similarity=0.482 Sum_probs=112.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~LR~ 1119 (1198)
|+++||+++|++ +.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 146999999999999999999999999999999999999999999999999998877 567889
Q ss_pred hcceecccccccc-ccHHHHHhcCCC-------------CCCCHHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-------------GDATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~-------------~~~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++++|||++.+|. .|+++|+.++.. ....++++.++++..++.+... .|..|-.-+++++.+
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHH
Confidence 9999999999887 699999986421 0122456778889988877654 466666666665543
No 493
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.80 E-value=1.5e-19 Score=196.82 Aligned_cols=137 Identities=24% Similarity=0.424 Sum_probs=113.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+++...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999998888899999
Q ss_pred ceeccccccccccHHHHHhcCC---CCCCCHHHHHHHHHHcchHH-H----HHhccccccceeeeeec
Q 000984 1122 GLVSQEPVLFNDTIRANIAYGK---GGDATEAEIQAASEMANAHK-F----ICSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~---~~~~tdeei~~Al~~A~l~d-f----I~~LP~g~dt~v~~~~~ 1181 (1198)
++|||++.+|+.|++||+.++. .....++++.++++..++.+ . +..|+.|..-+++++.+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999998631 11123455778888888743 3 34566666666655443
No 494
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.80 E-value=1.2e-19 Score=200.49 Aligned_cols=138 Identities=29% Similarity=0.482 Sum_probs=112.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1198)
|+++||+++|+. +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2359999999999999999999999999999999999999999999999999987754 45789
Q ss_pred hcceecccccccc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFN-DTIRANIAYGKGG-------------DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~~-------------~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
++++|||++.+|. .|++||+.++... ...++++.++++..++.++... |..|...+++++.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 9999999999886 6999999875211 1123467788888888776544 56666666666544
Q ss_pred c
Q 000984 1182 P 1182 (1198)
Q Consensus 1182 ~ 1182 (1198)
-
T Consensus 160 l 160 (243)
T TIGR02315 160 L 160 (243)
T ss_pred H
Confidence 3
No 495
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.1e-20 Score=198.34 Aligned_cols=134 Identities=31% Similarity=0.489 Sum_probs=109.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999963 36999999999999999999999999999999999999999999999999998754 3578899
Q ss_pred eecccccccc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1123 LVSQEPVLFN-DTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~-gTIreNI~~g~~~-----~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+|||++.+|. .|++||+.++... ...++++.++++..++.++..+ |..|-.-+++++.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999886 6999999875210 1123457888999988776554 56666666655443
No 496
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.80 E-value=1.3e-19 Score=197.94 Aligned_cols=139 Identities=25% Similarity=0.387 Sum_probs=111.2
Q ss_pred cEEEeeeeEECCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---H
Q 000984 1042 EIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---L 1117 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~-~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---L 1117 (1198)
-|+++||+++|+++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 25999999999999999999999999999999999999999999999999998887654 3
Q ss_pred -Hhhcceeccccccccc-cHHHHHhcCC--CC---CCCHHHHHHHHHHcchHHHHHh----ccccccceeeeee
Q 000984 1118 -RQQMGLVSQEPVLFND-TIRANIAYGK--GG---DATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1118 -R~~IsiV~Qdp~LF~g-TIreNI~~g~--~~---~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~ 1180 (1198)
++++++|||++.+|.+ |++||+.++. .. ....+++.++++..++.++..+ |+.|-..++++..
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 3689999999999885 9999998631 00 1124567888999999887655 4455555554443
No 497
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.80 E-value=1.6e-19 Score=192.88 Aligned_cols=133 Identities=19% Similarity=0.351 Sum_probs=111.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999963 35999999999999999999999999999999999999999999999999987654 57889999
Q ss_pred eeccccccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHH----Hhccccccceeeeee
Q 000984 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVM 1180 (1198)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~ 1180 (1198)
++||++.++ +.|++||+.+... ..+++++.++++..++.++. ..|+.|..-+++++.
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 138 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALAR 138 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHH
Confidence 999999876 6899999987632 35677889999999987654 445666555555443
No 498
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.2e-20 Score=210.78 Aligned_cols=132 Identities=27% Similarity=0.448 Sum_probs=109.8
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 359999999999999999999999999999999999999999999999999988765 46899
Q ss_pred ceecccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHhccc----cccceeee
Q 000984 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ----VRTSRLLL 1178 (1198)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~LP~----g~dt~v~~ 1178 (1198)
++|+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.|. |-.-+|++
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaL 147 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVAL 147 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 99999999996 599999998631 0112 4567889999999877665553 44444444
No 499
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.80 E-value=1.2e-19 Score=197.38 Aligned_cols=139 Identities=26% Similarity=0.374 Sum_probs=110.2
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH---H
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---R 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L---R 1118 (1198)
|+++||+++|++.. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+.+++...+ |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 1369999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -hhcceecccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
++|++|||++.+|. .|++||+.++.. ... .++++.++++..++++...+ |..|-.-+++++.+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 68999999999995 699999986311 011 13457788888888766544 55555555555443
No 500
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=9.8e-20 Score=209.70 Aligned_cols=139 Identities=24% Similarity=0.408 Sum_probs=112.7
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR 1118 (1198)
|+++||+++|+.+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 246999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hhcceecccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++|++|||++.+|. .|++||+.++.. ...+ ++++.++++..++.++.. +|..|-.-+++++.+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999986 799999987521 1122 245778888888877654 456666666665543
Done!