Query 000984
Match_columns 1198
No_of_seqs 535 out of 4801
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 04:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2E-163 8E-168 1623.1 120.9 1130 39-1176 55-1211(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2E-142 8E-147 1418.1 105.9 1118 41-1177 30-1166(1284)
3 4f4c_A Multidrug resistance pr 100.0 1.5E-86 5.2E-91 884.9 55.3 576 43-623 737-1317(1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 2.4E-80 8.3E-85 764.0 71.5 569 46-623 11-579 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 5.6E-80 1.9E-84 763.3 66.6 570 43-623 22-591 (598)
6 4a82_A Cystic fibrosis transme 100.0 1.9E-79 6.5E-84 756.4 66.7 570 47-622 3-576 (578)
7 2yl4_A ATP-binding cassette SU 100.0 5.9E-77 2E-81 737.4 75.0 574 46-623 7-584 (595)
8 3b5x_A Lipid A export ATP-bind 100.0 1.2E-76 4.2E-81 732.7 77.5 566 46-622 13-579 (582)
9 3b60_A Lipid A export ATP-bind 100.0 1E-76 3.6E-81 733.3 72.4 566 46-622 13-579 (582)
10 3g5u_A MCG1178, multidrug resi 100.0 4.7E-75 1.6E-79 772.7 57.8 581 43-625 690-1273(1284)
11 3qf4_A ABC transporter, ATP-bi 100.0 1.3E-59 4.5E-64 579.3 56.2 463 707-1176 11-473 (587)
12 3qf4_B Uncharacterized ABC tra 100.0 6.2E-59 2.1E-63 575.2 52.9 463 705-1176 23-485 (598)
13 4a82_A Cystic fibrosis transme 100.0 1E-58 3.5E-63 571.6 49.8 465 708-1177 3-472 (578)
14 3b5x_A Lipid A export ATP-bind 100.0 1.6E-57 5.5E-62 562.0 58.8 461 707-1176 13-474 (582)
15 2yl4_A ATP-binding cassette SU 100.0 2.2E-57 7.4E-62 562.3 57.4 467 707-1176 7-477 (595)
16 3b60_A Lipid A export ATP-bind 100.0 2.3E-57 7.7E-62 560.7 55.4 462 706-1176 12-474 (582)
17 3nh6_A ATP-binding cassette SU 100.0 2.5E-59 8.7E-64 524.3 26.6 277 344-624 15-291 (306)
18 2ff7_A Alpha-hemolysin translo 100.0 2.7E-50 9.3E-55 441.0 31.2 239 382-621 6-244 (247)
19 2ghi_A Transport protein; mult 100.0 1.6E-49 5.5E-54 438.4 28.8 239 382-622 16-254 (260)
20 2ixe_A Antigen peptide transpo 100.0 6.9E-49 2.3E-53 435.6 27.3 239 381-620 14-255 (271)
21 1mv5_A LMRA, multidrug resista 100.0 2.1E-49 7.3E-54 434.0 19.4 234 384-620 2-236 (243)
22 3gd7_A Fusion complex of cysti 100.0 1.3E-47 4.4E-52 442.9 25.9 237 378-617 14-250 (390)
23 2pze_A Cystic fibrosis transme 100.0 3.3E-46 1.1E-50 404.6 25.2 214 382-610 5-219 (229)
24 2cbz_A Multidrug resistance-as 100.0 2.5E-46 8.7E-51 407.3 23.5 223 383-621 3-228 (237)
25 3tui_C Methionine import ATP-b 100.0 7.7E-45 2.6E-49 412.9 24.8 229 382-617 23-261 (366)
26 3gfo_A Cobalt import ATP-bindi 100.0 1E-44 3.4E-49 401.3 22.3 219 383-610 7-234 (275)
27 3tif_A Uncharacterized ABC tra 100.0 5.9E-45 2E-49 396.0 19.0 217 384-608 2-233 (235)
28 1ji0_A ABC transporter; ATP bi 100.0 5.6E-44 1.9E-48 389.9 24.6 219 383-610 6-229 (240)
29 3fvq_A Fe(3+) IONS import ATP- 100.0 1.8E-43 6.2E-48 401.9 24.5 220 383-616 4-235 (359)
30 2olj_A Amino acid ABC transpor 100.0 4.3E-43 1.5E-47 386.1 26.6 219 383-611 24-250 (263)
31 4g1u_C Hemin import ATP-bindin 100.0 2.3E-43 7.9E-48 389.8 23.7 213 383-609 11-237 (266)
32 3rlf_A Maltose/maltodextrin im 100.0 2.7E-43 9.4E-48 402.9 22.5 223 383-617 3-231 (381)
33 1vpl_A ABC transporter, ATP-bi 100.0 6.3E-43 2.1E-47 383.6 22.3 217 382-609 14-235 (256)
34 1b0u_A Histidine permease; ABC 100.0 1.7E-42 5.8E-47 382.7 25.5 220 383-612 6-245 (262)
35 2iw3_A Elongation factor 3A; a 100.0 2.1E-42 7.1E-47 434.8 29.6 196 383-608 435-634 (986)
36 1g6h_A High-affinity branched- 100.0 1.2E-42 4E-47 383.6 24.0 214 383-606 7-239 (257)
37 2pcj_A ABC transporter, lipopr 100.0 9.2E-43 3.2E-47 376.2 20.8 211 383-603 4-222 (224)
38 2bbs_A Cystic fibrosis transme 100.0 9.5E-43 3.2E-47 388.5 21.6 209 381-609 38-247 (290)
39 2yyz_A Sugar ABC transporter, 100.0 2.5E-42 8.6E-47 394.3 25.5 217 383-615 3-229 (359)
40 2yz2_A Putative ABC transporte 100.0 1.9E-42 6.4E-47 383.6 23.6 215 384-610 3-228 (266)
41 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-42 3.6E-47 386.8 21.0 217 382-609 20-252 (279)
42 2onk_A Molybdate/tungstate ABC 100.0 3.7E-42 1.3E-46 374.1 22.8 213 384-611 2-218 (240)
43 2it1_A 362AA long hypothetical 100.0 2.6E-42 9E-47 394.6 22.5 221 383-615 3-229 (362)
44 1v43_A Sugar-binding transport 100.0 5.6E-42 1.9E-46 393.3 25.0 221 383-615 11-237 (372)
45 1z47_A CYSA, putative ABC-tran 100.0 3.3E-42 1.1E-46 392.2 22.9 223 382-615 13-241 (355)
46 3d31_A Sulfate/molybdate ABC t 100.0 5.1E-42 1.7E-46 390.7 23.7 215 384-615 2-223 (348)
47 2qi9_C Vitamin B12 import ATP- 100.0 8.5E-42 2.9E-46 373.1 23.6 208 383-609 4-222 (249)
48 1oxx_K GLCV, glucose, ABC tran 100.0 4.1E-42 1.4E-46 393.3 21.8 223 383-615 3-236 (353)
49 1g29_1 MALK, maltose transport 100.0 7.6E-42 2.6E-46 393.3 22.0 221 383-615 3-235 (372)
50 3bk7_A ABC transporter ATP-bin 100.0 2.1E-42 7.3E-47 423.3 16.1 197 383-596 83-304 (607)
51 2d2e_A SUFC protein; ABC-ATPas 100.0 1.3E-41 4.4E-46 373.6 18.9 214 383-606 3-230 (250)
52 2pjz_A Hypothetical protein ST 100.0 2.3E-41 7.9E-46 372.3 19.8 207 384-609 2-215 (263)
53 2zu0_C Probable ATP-dependent 100.0 1.7E-40 6E-45 367.7 25.0 216 383-608 20-253 (267)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 2.2E-41 7.6E-46 410.8 18.2 195 385-596 22-234 (538)
55 2nq2_C Hypothetical ABC transp 100.0 1E-40 3.5E-45 366.2 20.5 200 383-609 4-217 (253)
56 1sgw_A Putative ABC transporte 100.0 2.7E-40 9.3E-45 352.3 16.3 194 383-598 10-210 (214)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.9E-40 6.4E-45 416.7 16.2 202 399-609 31-298 (670)
58 3ozx_A RNAse L inhibitor; ATP 100.0 4.8E-40 1.6E-44 397.5 17.4 191 388-596 4-213 (538)
59 3j16_B RLI1P; ribosome recycli 100.0 1.4E-37 4.9E-42 379.5 18.7 194 388-596 82-297 (608)
60 3nh6_A ATP-binding cassette SU 100.0 5.8E-34 2E-38 319.0 11.6 170 1003-1176 15-184 (306)
61 3bk7_A ABC transporter ATP-bin 100.0 3.3E-32 1.1E-36 333.2 16.9 199 383-609 357-563 (607)
62 1yqt_A RNAse L inhibitor; ATP- 100.0 2.7E-32 9.4E-37 331.0 15.9 199 383-609 287-493 (538)
63 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-31 4E-36 324.2 17.7 200 382-608 268-476 (538)
64 2v9p_A Replication protein E1; 100.0 2.3E-35 7.9E-40 328.8 -16.3 218 335-622 56-275 (305)
65 2iw3_A Elongation factor 3A; a 100.0 1.8E-31 6E-36 335.9 15.2 205 383-603 671-981 (986)
66 3j16_B RLI1P; ribosome recycli 100.0 1.5E-30 5.1E-35 317.7 16.7 198 387-610 350-560 (608)
67 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-29 3.8E-34 318.9 14.8 202 399-612 335-643 (670)
68 3pih_A Uvrabc system protein A 100.0 1.5E-28 5E-33 309.8 19.3 202 400-612 598-905 (916)
69 2vf7_A UVRA2, excinuclease ABC 100.0 1.9E-28 6.4E-33 306.4 19.6 102 505-608 363-474 (842)
70 2vf7_A UVRA2, excinuclease ABC 99.9 2.6E-27 9E-32 296.1 19.1 211 382-611 501-829 (842)
71 2r6f_A Excinuclease ABC subuni 99.9 3.7E-27 1.3E-31 293.8 18.6 212 382-612 628-945 (972)
72 4aby_A DNA repair protein RECN 99.9 1.2E-26 4.1E-31 276.2 18.6 200 401-601 50-380 (415)
73 2ygr_A Uvrabc system protein A 99.9 1.6E-26 5.4E-31 289.4 18.9 211 382-611 646-962 (993)
74 2npi_A Protein CLP1; CLP1-PCF1 99.9 4E-30 1.4E-34 304.5 -15.3 180 403-609 129-338 (460)
75 2ff7_A Alpha-hemolysin translo 99.9 2.6E-26 8.8E-31 251.0 15.0 134 1041-1176 6-139 (247)
76 1mv5_A LMRA, multidrug resista 99.9 7.4E-26 2.5E-30 247.4 11.0 132 1043-1176 2-133 (243)
77 2ghi_A Transport protein; mult 99.9 1.9E-25 6.6E-30 246.0 14.3 134 1041-1176 16-149 (260)
78 2ixe_A Antigen peptide transpo 99.9 3.3E-25 1.1E-29 245.5 14.5 135 1040-1175 14-149 (271)
79 3pih_A Uvrabc system protein A 99.9 3.8E-25 1.3E-29 278.9 12.6 166 428-609 384-560 (916)
80 1e69_A Chromosome segregation 99.9 2E-24 6.9E-29 246.9 15.7 194 403-598 16-301 (322)
81 2r6f_A Excinuclease ABC subuni 99.9 4.6E-24 1.6E-28 266.1 18.9 149 437-608 433-599 (972)
82 3gd7_A Fusion complex of cysti 99.9 2.2E-24 7.4E-29 249.1 14.5 134 1039-1176 16-149 (390)
83 3b85_A Phosphate starvation-in 99.9 6.8E-26 2.3E-30 240.5 -2.8 157 399-596 13-170 (208)
84 2ygr_A Uvrabc system protein A 99.9 2.1E-22 7.3E-27 252.2 23.7 134 470-609 465-617 (993)
85 4gp7_A Metallophosphoesterase; 99.9 8.1E-24 2.8E-28 218.7 2.3 149 404-590 1-168 (171)
86 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.6E-22 1.6E-26 230.4 14.9 83 518-600 275-364 (365)
87 2pze_A Cystic fibrosis transme 99.9 4E-22 1.4E-26 215.6 13.3 119 1041-1175 5-123 (229)
88 3tif_A Uncharacterized ABC tra 99.9 1E-22 3.5E-27 220.9 8.1 140 1043-1182 2-160 (235)
89 1z6g_A Guanylate kinase; struc 99.9 6.1E-25 2.1E-29 236.5 -9.6 166 400-595 11-193 (218)
90 1ye8_A Protein THEP1, hypothet 99.9 3.4E-23 1.2E-27 214.6 1.8 147 414-600 2-159 (178)
91 2cbz_A Multidrug resistance-as 99.9 6.3E-22 2.2E-26 215.0 11.0 117 1043-1175 4-120 (237)
92 3gfo_A Cobalt import ATP-bindi 99.9 3.2E-22 1.1E-26 221.2 8.4 138 1042-1181 7-157 (275)
93 4g1u_C Hemin import ATP-bindin 99.9 1.2E-21 4E-26 216.2 11.5 137 1042-1181 11-155 (266)
94 1ji0_A ABC transporter; ATP bi 99.8 8E-22 2.7E-26 214.8 9.8 137 1042-1181 6-153 (240)
95 3tui_C Methionine import ATP-b 99.8 6.5E-22 2.2E-26 224.8 9.0 142 1041-1182 23-178 (366)
96 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.5E-23 5.2E-28 239.0 -4.6 131 401-597 160-291 (330)
97 2olj_A Amino acid ABC transpor 99.8 1.1E-21 3.8E-26 215.6 9.3 137 1042-1181 24-173 (263)
98 1vpl_A ABC transporter, ATP-bi 99.8 1.3E-21 4.4E-26 214.4 9.4 137 1041-1181 14-160 (256)
99 2yz2_A Putative ABC transporte 99.8 2.3E-21 7.9E-26 214.4 11.2 135 1043-1180 3-151 (266)
100 2pcj_A ABC transporter, lipopr 99.8 1.3E-21 4.4E-26 210.8 8.6 138 1042-1182 4-155 (224)
101 2qi9_C Vitamin B12 import ATP- 99.8 3.7E-21 1.3E-25 209.8 11.7 133 1043-1183 5-142 (249)
102 1sgw_A Putative ABC transporte 99.8 1.7E-21 5.7E-26 207.3 8.5 132 1042-1182 10-148 (214)
103 2ihy_A ABC transporter, ATP-bi 99.8 2.2E-21 7.6E-26 215.3 9.5 137 1042-1181 21-175 (279)
104 1g6h_A High-affinity branched- 99.8 7.2E-21 2.5E-25 209.5 11.5 137 1042-1181 7-167 (257)
105 1b0u_A Histidine permease; ABC 99.8 5.1E-21 1.7E-25 211.0 9.9 136 1043-1181 7-167 (262)
106 3fvq_A Fe(3+) IONS import ATP- 99.8 3.2E-21 1.1E-25 219.2 8.3 137 1042-1181 4-152 (359)
107 3rlf_A Maltose/maltodextrin im 99.8 4E-21 1.4E-25 219.9 8.6 135 1042-1181 3-147 (381)
108 1tq4_A IIGP1, interferon-induc 99.8 8.2E-23 2.8E-27 237.3 -7.2 167 399-590 36-247 (413)
109 2yyz_A Sugar ABC transporter, 99.8 1.4E-20 4.7E-25 214.9 11.1 134 1043-1181 4-147 (359)
110 2it1_A 362AA long hypothetical 99.8 8E-21 2.7E-25 217.1 8.8 135 1042-1181 3-147 (362)
111 1z47_A CYSA, putative ABC-tran 99.8 1E-20 3.6E-25 215.3 9.3 137 1041-1181 13-159 (355)
112 1v43_A Sugar-binding transport 99.8 1.7E-20 5.9E-25 215.1 10.9 135 1042-1181 11-155 (372)
113 3d31_A Sulfate/molybdate ABC t 99.8 1.2E-20 4E-25 214.8 8.9 133 1043-1181 2-141 (348)
114 2dpy_A FLII, flagellum-specifi 99.8 2.5E-22 8.7E-27 236.6 -5.4 194 382-609 130-344 (438)
115 2v9p_A Replication protein E1; 99.8 2.8E-22 9.7E-27 223.3 -5.3 157 976-1173 39-197 (305)
116 2bbs_A Cystic fibrosis transme 99.8 3.3E-20 1.1E-24 206.7 10.5 115 1040-1175 38-152 (290)
117 2onk_A Molybdate/tungstate ABC 99.8 1.4E-20 4.8E-25 204.3 7.1 131 1043-1181 2-140 (240)
118 1oxx_K GLCV, glucose, ABC tran 99.8 1.3E-20 4.3E-25 215.5 6.9 136 1043-1181 4-154 (353)
119 2d2e_A SUFC protein; ABC-ATPas 99.8 1.5E-20 5E-25 206.1 6.2 136 1043-1181 4-157 (250)
120 2o5v_A DNA replication and rep 99.8 2.4E-19 8.4E-24 205.1 15.1 81 522-607 265-354 (359)
121 1g29_1 MALK, maltose transport 99.8 3.1E-20 1.1E-24 213.6 7.6 135 1042-1181 3-153 (372)
122 2pjz_A Hypothetical protein ST 99.8 5E-20 1.7E-24 202.4 6.3 133 1043-1181 2-142 (263)
123 3sop_A Neuronal-specific septi 99.8 7.7E-21 2.6E-25 210.3 -1.6 147 414-585 4-154 (270)
124 3aez_A Pantothenate kinase; tr 99.8 2.8E-21 9.5E-26 218.1 -6.5 175 380-596 40-245 (312)
125 2gza_A Type IV secretion syste 99.8 1.2E-22 4.3E-27 234.8 -18.6 206 966-1179 53-284 (361)
126 3b9q_A Chloroplast SRP recepto 99.8 2.2E-20 7.5E-25 209.8 0.0 174 403-598 91-284 (302)
127 2zu0_C Probable ATP-dependent 99.8 1.2E-19 4.2E-24 200.5 5.5 137 1042-1181 20-178 (267)
128 2nq2_C Hypothetical ABC transp 99.8 2.3E-19 7.8E-24 196.5 7.2 125 1042-1181 4-142 (253)
129 2f1r_A Molybdopterin-guanine d 99.7 9E-21 3.1E-25 194.2 -7.2 111 413-544 3-125 (171)
130 1znw_A Guanylate kinase, GMP k 99.7 1.6E-20 5.6E-25 200.5 -6.8 168 399-594 9-202 (207)
131 2og2_A Putative signal recogni 99.7 1.1E-19 3.7E-24 207.5 -1.1 172 404-597 149-340 (359)
132 2eyu_A Twitching motility prot 99.7 8.4E-21 2.9E-25 208.9 -11.4 174 400-582 15-241 (261)
133 2i3b_A HCR-ntpase, human cance 99.7 7.2E-20 2.5E-24 191.1 -4.5 159 412-602 1-169 (189)
134 2obl_A ESCN; ATPase, hydrolase 99.7 2.7E-19 9.1E-24 204.6 -2.4 195 383-609 45-255 (347)
135 2ewv_A Twitching motility prot 99.7 2.4E-20 8.1E-25 216.3 -12.5 175 400-583 126-353 (372)
136 4ad8_A DNA repair protein RECN 99.7 2.8E-17 9.6E-22 199.9 12.4 77 521-597 395-474 (517)
137 3qkt_A DNA double-strand break 99.7 1.6E-16 5.3E-21 182.8 16.2 76 519-594 245-327 (339)
138 1cr0_A DNA primase/helicase; R 99.7 2.7E-17 9.1E-22 186.0 8.5 181 400-598 23-237 (296)
139 2o8b_B DNA mismatch repair pro 99.7 1.5E-17 5.1E-22 214.0 5.3 172 382-606 749-939 (1022)
140 1tf7_A KAIC; homohexamer, hexa 99.7 1.7E-18 6E-23 211.0 -4.6 169 398-597 24-211 (525)
141 1tf7_A KAIC; homohexamer, hexa 99.7 1.9E-16 6.5E-21 193.0 12.0 152 406-597 275-444 (525)
142 1lvg_A Guanylate kinase, GMP k 99.6 1.6E-19 5.3E-24 191.2 -14.0 158 410-595 2-173 (198)
143 2jeo_A Uridine-cytidine kinase 99.6 1.3E-17 4.3E-22 183.0 -1.0 166 398-608 11-186 (245)
144 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 6E-16 2E-20 154.1 11.1 88 511-598 41-142 (148)
145 1lw7_A Transcriptional regulat 99.6 3.2E-18 1.1E-22 199.1 -8.0 175 401-607 157-353 (365)
146 1ewq_A DNA mismatch repair pro 99.6 2.3E-16 8E-21 196.9 6.3 158 381-600 548-715 (765)
147 1pzn_A RAD51, DNA repair and r 99.6 5.9E-17 2E-21 186.2 0.8 166 400-607 118-313 (349)
148 3thx_A DNA mismatch repair pro 99.6 7.6E-16 2.6E-20 195.5 11.0 167 382-607 630-811 (934)
149 3asz_A Uridine kinase; cytidin 99.6 5.6E-18 1.9E-22 181.5 -8.9 140 409-581 3-161 (211)
150 1w1w_A Structural maintenance 99.6 1.6E-15 5.5E-20 180.4 10.9 73 522-594 333-410 (430)
151 4a74_A DNA repair and recombin 99.6 3.8E-16 1.3E-20 169.6 4.8 152 408-596 21-200 (231)
152 3szr_A Interferon-induced GTP- 99.6 5.8E-17 2E-21 199.7 -3.6 190 383-608 10-236 (608)
153 3jvv_A Twitching mobility prot 99.6 7.9E-16 2.7E-20 176.3 3.9 147 387-596 92-246 (356)
154 1rj9_A FTSY, signal recognitio 99.5 2.1E-15 7.1E-20 169.3 5.5 151 411-583 101-260 (304)
155 2gza_A Type IV secretion syste 99.5 5.4E-17 1.9E-21 187.6 -7.9 149 385-536 137-301 (361)
156 2qag_C Septin-7; cell cycle, c 99.5 6.2E-16 2.1E-20 180.4 0.3 166 382-584 10-180 (418)
157 2ehv_A Hypothetical protein PH 99.5 5.8E-16 2E-20 170.3 -0.2 181 384-595 7-207 (251)
158 3kta_B Chromosome segregation 99.5 1.8E-14 6.3E-19 147.2 10.8 79 520-598 62-146 (173)
159 1pui_A ENGB, probable GTP-bind 99.5 4.2E-16 1.4E-20 166.5 -2.3 169 384-570 4-198 (210)
160 2qnr_A Septin-2, protein NEDD5 99.5 7.1E-16 2.4E-20 173.7 -2.0 162 387-582 2-168 (301)
161 1odf_A YGR205W, hypothetical 3 99.5 2E-16 6.7E-21 176.6 -6.9 129 411-557 30-169 (290)
162 2w0m_A SSO2452; RECA, SSPF, un 99.5 2.1E-14 7.1E-19 156.0 6.8 166 399-597 9-193 (235)
163 3thx_B DNA mismatch repair pro 99.5 1.2E-14 4.1E-19 184.0 4.6 169 382-599 639-815 (918)
164 2f1r_A Molybdopterin-guanine d 99.4 1.1E-14 3.7E-19 149.1 1.3 87 1072-1177 3-101 (171)
165 1wb9_A DNA mismatch repair pro 99.4 3.7E-14 1.3E-18 178.2 4.9 166 382-601 576-750 (800)
166 1nlf_A Regulatory protein REPA 99.4 4.3E-13 1.5E-17 149.9 11.8 151 408-584 26-184 (279)
167 1s96_A Guanylate kinase, GMP k 99.4 1.2E-14 4.2E-19 155.3 -0.7 142 408-609 12-160 (219)
168 1nij_A Hypothetical protein YJ 99.4 2E-15 7E-20 171.6 -9.9 153 413-582 5-190 (318)
169 2pt7_A CAG-ALFA; ATPase, prote 99.4 2.4E-15 8E-20 171.4 -9.8 149 976-1140 75-234 (330)
170 3c8u_A Fructokinase; YP_612366 99.4 2E-15 6.8E-20 161.1 -9.9 118 409-550 19-140 (208)
171 1htw_A HI0065; nucleotide-bind 99.4 8.7E-15 3E-19 147.8 -4.9 90 1044-1142 9-99 (158)
172 2qag_B Septin-6, protein NEDD5 99.4 4.4E-14 1.5E-18 163.6 -0.2 177 384-578 17-216 (427)
173 2cvh_A DNA repair and recombin 99.4 1.2E-12 4.3E-17 140.5 11.0 151 400-596 7-185 (220)
174 1z6g_A Guanylate kinase; struc 99.4 8.1E-14 2.8E-18 149.5 1.3 93 1059-1160 11-115 (218)
175 2eyu_A Twitching motility prot 99.3 7.7E-14 2.6E-18 153.4 -0.1 104 1043-1159 6-120 (261)
176 1lvg_A Guanylate kinase, GMP k 99.3 5.5E-14 1.9E-18 148.5 -1.4 82 1068-1159 1-95 (198)
177 1zp6_A Hypothetical protein AT 99.3 2.2E-14 7.5E-19 150.8 -4.8 136 408-565 5-144 (191)
178 1lw7_A Transcriptional regulat 99.3 5.6E-14 1.9E-18 163.3 -2.2 122 1060-1184 157-291 (365)
179 3aez_A Pantothenate kinase; tr 99.3 5.8E-14 2E-18 158.3 -3.8 81 1039-1141 40-143 (312)
180 2ewv_A Twitching motility prot 99.3 3.4E-13 1.2E-17 156.1 1.7 95 1059-1161 126-233 (372)
181 1n0w_A DNA repair protein RAD5 99.3 3.9E-12 1.3E-16 139.0 8.0 146 408-596 20-209 (243)
182 2dpy_A FLII, flagellum-specifi 99.3 3.7E-13 1.3E-17 158.5 -1.1 98 1041-1141 130-237 (438)
183 2yhs_A FTSY, cell division pro 99.2 4.8E-12 1.6E-16 148.2 6.9 150 402-579 283-447 (503)
184 2npi_A Protein CLP1; CLP1-PCF1 99.2 1.4E-13 4.8E-18 163.0 -6.8 122 1041-1181 117-249 (460)
185 2qm8_A GTPase/ATPase; G protei 99.2 3.3E-13 1.1E-17 154.2 -5.7 177 386-569 32-259 (337)
186 1htw_A HI0065; nucleotide-bind 99.2 8E-13 2.7E-17 133.4 -2.4 86 388-482 12-97 (158)
187 3sop_A Neuronal-specific septi 99.2 4.3E-12 1.5E-16 140.2 2.3 101 1073-1176 4-107 (270)
188 1p9r_A General secretion pathw 99.2 8.5E-14 2.9E-18 162.6 -12.5 129 401-546 158-315 (418)
189 2bdt_A BH3686; alpha-beta prot 99.2 1.1E-13 3.6E-18 145.3 -10.9 162 412-608 2-183 (189)
190 3auy_A DNA double-strand break 99.2 5.1E-11 1.7E-15 138.5 10.2 74 521-594 279-359 (371)
191 2oap_1 GSPE-2, type II secreti 99.2 2.4E-13 8.3E-18 163.1 -9.7 172 399-586 247-455 (511)
192 3b9q_A Chloroplast SRP recepto 99.1 1.2E-11 4E-16 138.8 3.9 82 1061-1142 90-179 (302)
193 2rcn_A Probable GTPase ENGC; Y 99.1 2.9E-11 9.9E-16 137.4 6.9 121 401-537 205-328 (358)
194 2qag_B Septin-6, protein NEDD5 99.1 4.5E-12 1.5E-16 146.9 0.1 95 1042-1151 16-113 (427)
195 2bbw_A Adenylate kinase 4, AK4 99.1 2E-12 7E-17 141.6 -3.0 157 411-595 26-218 (246)
196 1tq4_A IIGP1, interferon-induc 99.1 2.9E-12 9.8E-17 148.9 -2.5 92 1059-1163 37-148 (413)
197 3lda_A DNA repair protein RAD5 99.1 6E-11 2E-15 137.7 8.0 146 408-596 174-363 (400)
198 2kjq_A DNAA-related protein; s 99.1 9.8E-11 3.3E-15 117.2 7.5 91 401-580 30-124 (149)
199 1sxj_E Activator 1 40 kDa subu 99.1 5.8E-11 2E-15 137.5 6.7 138 414-584 38-177 (354)
200 3b85_A Phosphate starvation-in 99.1 4.5E-12 1.5E-16 134.2 -2.7 63 1058-1128 13-75 (208)
201 3e70_C DPA, signal recognition 99.1 1.6E-10 5.6E-15 130.7 9.9 141 409-580 126-278 (328)
202 4e22_A Cytidylate kinase; P-lo 99.1 1.5E-11 5.2E-16 134.9 1.3 107 1059-1176 18-142 (252)
203 2qm8_A GTPase/ATPase; G protei 99.1 2.8E-12 9.7E-17 146.5 -5.2 87 1043-1132 30-120 (337)
204 2og2_A Putative signal recogni 99.1 2.9E-11 9.9E-16 138.0 3.1 81 1062-1142 148-236 (359)
205 1sq5_A Pantothenate kinase; P- 99.1 1.1E-11 3.8E-16 140.1 -1.0 93 1039-1141 34-151 (308)
206 2yhs_A FTSY, cell division pro 99.1 3.8E-11 1.3E-15 140.5 3.4 81 1062-1142 284-371 (503)
207 1znw_A Guanylate kinase, GMP k 99.0 1.7E-11 5.7E-16 130.5 -0.6 116 1058-1182 9-142 (207)
208 1u0l_A Probable GTPase ENGC; p 99.0 7.9E-11 2.7E-15 132.6 2.7 106 1066-1172 164-292 (301)
209 3ec2_A DNA replication protein 99.0 2.2E-10 7.6E-15 118.8 5.6 111 406-582 32-144 (180)
210 2jeo_A Uridine-cytidine kinase 99.0 1E-10 3.6E-15 127.8 3.0 71 1057-1141 11-81 (245)
211 1sq5_A Pantothenate kinase; P- 99.0 1.1E-11 3.8E-16 140.1 -6.0 140 381-555 35-199 (308)
212 2x8a_A Nuclear valosin-contain 99.0 1.5E-12 5E-17 144.6 -13.3 130 399-551 33-164 (274)
213 2yv5_A YJEQ protein; hydrolase 99.0 4.6E-11 1.6E-15 134.4 -1.6 115 408-535 161-300 (302)
214 1rj9_A FTSY, signal recognitio 99.0 4.8E-10 1.6E-14 125.7 6.5 72 1070-1141 101-179 (304)
215 3szr_A Interferon-induced GTP- 98.9 5.4E-11 1.8E-15 146.6 -3.7 96 1042-1141 10-120 (608)
216 3euj_A Chromosome partition pr 98.9 4.7E-10 1.6E-14 132.2 4.3 80 1044-1129 8-95 (483)
217 3lnc_A Guanylate kinase, GMP k 98.9 6.9E-12 2.4E-16 136.0 -12.7 37 400-436 15-52 (231)
218 3asz_A Uridine kinase; cytidin 98.8 5.9E-10 2E-14 118.8 2.2 79 1067-1167 2-85 (211)
219 3ney_A 55 kDa erythrocyte memb 98.8 9.2E-10 3.1E-14 114.5 3.3 81 1067-1157 15-108 (197)
220 2yv5_A YJEQ protein; hydrolase 98.8 8.5E-10 2.9E-14 124.1 3.2 102 1067-1171 161-287 (302)
221 1udx_A The GTP-binding protein 98.8 6.9E-10 2.4E-14 129.3 2.5 153 402-579 147-306 (416)
222 1cke_A CK, MSSA, protein (cyti 98.8 3.4E-10 1.2E-14 122.1 -0.7 97 1071-1175 5-119 (227)
223 1p9r_A General secretion pathw 98.8 3.1E-10 1.1E-14 132.4 -1.2 134 1043-1181 144-307 (418)
224 2obl_A ESCN; ATPase, hydrolase 98.8 8.1E-10 2.8E-14 126.1 2.1 65 1042-1109 45-109 (347)
225 1s96_A Guanylate kinase, GMP k 98.8 3.8E-10 1.3E-14 120.5 -0.8 89 1066-1158 11-107 (219)
226 1kgd_A CASK, peripheral plasma 98.8 1.4E-09 4.8E-14 112.7 3.3 81 1069-1157 3-94 (180)
227 3e70_C DPA, signal recognition 98.8 2.4E-09 8.4E-14 121.0 4.4 76 1067-1142 125-207 (328)
228 4aby_A DNA repair protein RECN 98.8 1.8E-09 6.3E-14 127.7 3.4 81 1060-1141 50-169 (415)
229 2qag_C Septin-7; cell cycle, c 98.8 1E-09 3.5E-14 128.0 1.1 90 1041-1143 10-100 (418)
230 1u0l_A Probable GTPase ENGC; p 98.8 1E-09 3.4E-14 123.6 0.8 102 407-509 164-289 (301)
231 1pui_A ENGB, probable GTP-bind 98.8 6.6E-10 2.2E-14 118.2 -1.0 91 1043-1139 4-118 (210)
232 1cke_A CK, MSSA, protein (cyti 98.8 2E-10 6.9E-15 123.9 -5.3 127 412-550 5-150 (227)
233 3euj_A Chromosome partition pr 98.7 3.2E-09 1.1E-13 125.2 4.4 64 385-454 8-71 (483)
234 3lnc_A Guanylate kinase, GMP k 98.7 2.2E-09 7.4E-14 116.2 2.6 78 1059-1142 15-105 (231)
235 3tr0_A Guanylate kinase, GMP k 98.7 2.9E-09 1E-13 112.7 3.4 71 1065-1139 1-72 (205)
236 2rcn_A Probable GTPase ENGC; Y 98.7 3.4E-10 1.2E-14 128.6 -4.2 96 1060-1164 205-307 (358)
237 1ls1_A Signal recognition part 98.7 2.1E-08 7.3E-13 112.1 9.8 132 384-568 77-209 (295)
238 1zp6_A Hypothetical protein AT 98.7 2.8E-09 9.5E-14 111.6 2.3 70 1067-1141 5-74 (191)
239 1odf_A YGR205W, hypothetical 3 98.7 6.6E-10 2.3E-14 123.8 -3.0 91 1069-1175 29-121 (290)
240 1vma_A Cell division protein F 98.7 8E-09 2.7E-13 115.6 5.6 97 406-551 98-197 (306)
241 1t9h_A YLOQ, probable GTPase E 98.7 2.3E-09 7.8E-14 119.6 0.9 97 1066-1164 168-288 (307)
242 1pzn_A RAD51, DNA repair and r 98.7 4.5E-09 1.5E-13 120.6 3.3 102 1060-1171 119-228 (349)
243 2px0_A Flagellar biosynthesis 98.7 1.9E-08 6.5E-13 112.4 8.3 138 410-600 103-246 (296)
244 2oap_1 GSPE-2, type II secreti 98.7 5.8E-09 2E-13 125.1 3.8 98 1059-1160 248-355 (511)
245 1t9h_A YLOQ, probable GTPase E 98.6 1.5E-09 5E-14 121.2 -2.8 73 407-481 168-248 (307)
246 4e22_A Cytidylate kinase; P-lo 98.6 2E-09 6.7E-14 118.0 -2.1 78 401-481 19-114 (252)
247 3c8u_A Fructokinase; YP_612366 98.6 3.2E-09 1.1E-13 112.8 -0.7 54 1068-1140 19-72 (208)
248 1in4_A RUVB, holliday junction 98.6 3.3E-10 1.1E-14 129.8 -9.5 146 399-569 31-193 (334)
249 1iy2_A ATP-dependent metallopr 98.6 1.8E-10 6.1E-15 128.5 -11.5 131 386-543 52-190 (278)
250 4a74_A DNA repair and recombin 98.6 1.7E-08 5.7E-13 108.9 4.0 88 1045-1143 4-98 (231)
251 2i3b_A HCR-ntpase, human cance 98.6 4.4E-09 1.5E-13 109.4 -0.9 54 1071-1128 1-54 (189)
252 1qhl_A Protein (cell division 98.6 1.6E-09 5.5E-14 115.6 -4.4 75 1042-1127 9-91 (227)
253 1ixz_A ATP-dependent metallopr 98.6 1.9E-10 6.4E-15 126.6 -12.7 137 385-550 27-171 (254)
254 3a00_A Guanylate kinase, GMP k 98.6 2.5E-08 8.5E-13 103.8 3.9 78 1071-1158 1-91 (186)
255 3jvv_A Twitching mobility prot 98.6 2.5E-08 8.5E-13 114.1 4.0 106 1046-1156 92-214 (356)
256 3tr0_A Guanylate kinase, GMP k 98.5 1.4E-08 4.8E-13 107.4 1.7 72 406-481 1-73 (205)
257 2zr9_A Protein RECA, recombina 98.5 1.9E-07 6.4E-12 106.8 10.8 35 408-442 57-91 (349)
258 3a00_A Guanylate kinase, GMP k 98.5 5.3E-09 1.8E-13 109.0 -2.1 127 412-548 1-169 (186)
259 2qnr_A Septin-2, protein NEDD5 98.5 1.5E-08 5.1E-13 113.8 1.1 84 1046-1142 2-87 (301)
260 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 7E-11 2.4E-15 136.3 -18.4 166 408-605 16-209 (392)
261 2x8a_A Nuclear valosin-contain 98.5 1.6E-08 5.4E-13 112.1 0.8 115 1059-1180 34-150 (274)
262 2ius_A DNA translocase FTSK; n 98.5 1E-08 3.5E-13 121.7 -1.0 159 404-582 159-343 (512)
263 1nij_A Hypothetical protein YJ 98.5 1E-08 3.5E-13 116.2 -1.0 71 1072-1142 5-102 (318)
264 1qhl_A Protein (cell division 98.5 3.9E-09 1.3E-13 112.6 -4.7 75 383-468 9-91 (227)
265 3k1j_A LON protease, ATP-depen 98.5 6.9E-09 2.4E-13 128.4 -3.2 157 399-567 47-227 (604)
266 1oix_A RAS-related protein RAB 98.5 2E-08 7E-13 105.0 0.5 141 414-567 31-188 (191)
267 1e69_A Chromosome segregation 98.5 6E-08 2E-12 110.3 4.2 91 1042-1142 5-146 (322)
268 2dr3_A UPF0273 protein PH0284; 98.5 7.8E-08 2.7E-12 104.8 4.9 167 400-595 10-196 (247)
269 4gp7_A Metallophosphoesterase; 98.5 2.4E-08 8.1E-13 102.5 0.6 29 1063-1091 1-29 (171)
270 2ehv_A Hypothetical protein PH 98.4 4.3E-08 1.5E-12 107.1 1.7 82 1043-1130 7-90 (251)
271 2j41_A Guanylate kinase; GMP, 98.4 5.6E-08 1.9E-12 102.9 2.3 85 1066-1158 1-96 (207)
272 2qt1_A Nicotinamide riboside k 98.4 3.3E-08 1.1E-12 104.8 0.1 79 1063-1168 13-91 (207)
273 3ney_A 55 kDa erythrocyte memb 98.4 2.6E-08 9E-13 103.5 -1.3 74 406-485 13-99 (197)
274 1cr0_A DNA primase/helicase; R 98.4 4.8E-08 1.6E-12 109.8 0.6 67 1059-1128 23-90 (296)
275 2r6a_A DNAB helicase, replicat 98.4 2.4E-07 8.3E-12 110.4 6.7 177 400-598 191-401 (454)
276 3nwj_A ATSK2; P loop, shikimat 98.4 4.1E-08 1.4E-12 106.6 -0.6 52 1042-1095 17-72 (250)
277 3uie_A Adenylyl-sulfate kinase 98.3 3.5E-08 1.2E-12 104.1 -1.8 52 1059-1111 13-66 (200)
278 4eun_A Thermoresistant glucoki 98.3 2.3E-07 7.8E-12 97.7 4.1 73 1063-1140 21-94 (200)
279 2dy1_A Elongation factor G; tr 98.3 1.3E-07 4.6E-12 117.6 2.5 133 406-584 3-139 (665)
280 3tau_A Guanylate kinase, GMP k 98.3 8.1E-08 2.8E-12 101.9 -0.2 81 1069-1157 6-97 (208)
281 1svm_A Large T antigen; AAA+ f 98.3 1.3E-08 4.3E-13 117.1 -7.9 137 400-551 157-312 (377)
282 1ye8_A Protein THEP1, hypothet 98.3 1.5E-07 5.1E-12 96.9 0.9 51 1073-1128 2-52 (178)
283 3ice_A Transcription terminati 98.3 2.2E-07 7.6E-12 104.4 2.2 56 1039-1096 130-199 (422)
284 1kgd_A CASK, peripheral plasma 98.2 9.4E-08 3.2E-12 98.9 -0.9 70 411-484 4-84 (180)
285 2o8b_B DNA mismatch repair pro 98.2 5.1E-07 1.7E-11 116.5 5.5 74 1041-1139 749-835 (1022)
286 3vaa_A Shikimate kinase, SK; s 98.2 3.8E-07 1.3E-11 95.9 3.4 45 1051-1095 5-49 (199)
287 1zu4_A FTSY; GTPase, signal re 98.2 3.8E-07 1.3E-11 102.9 2.6 81 1060-1140 94-185 (320)
288 1ewq_A DNA mismatch repair pro 98.2 4.2E-07 1.4E-11 113.7 3.2 84 1040-1142 548-635 (765)
289 1iy2_A ATP-dependent metallopr 98.2 1.6E-07 5.4E-12 104.5 -0.7 90 1044-1140 51-142 (278)
290 2f9l_A RAB11B, member RAS onco 98.2 5.1E-07 1.7E-11 94.9 3.2 137 414-568 7-165 (199)
291 2bdt_A BH3686; alpha-beta prot 98.2 3.8E-07 1.3E-11 95.1 2.1 62 1071-1141 2-64 (189)
292 2ce7_A Cell division protein F 98.2 2.5E-06 8.5E-11 101.0 9.3 114 400-584 39-167 (476)
293 1ixz_A ATP-dependent metallopr 98.2 1.6E-07 5.6E-12 102.9 -0.9 91 1043-1140 26-118 (254)
294 2qt1_A Nicotinamide riboside k 98.2 2.8E-07 9.7E-12 97.5 0.7 52 406-483 15-66 (207)
295 2vp4_A Deoxynucleoside kinase; 98.1 2.6E-07 8.8E-12 99.7 -0.7 65 1064-1132 13-87 (230)
296 1in4_A RUVB, holliday junction 98.1 2.9E-08 1E-12 113.5 -8.7 94 1043-1140 19-123 (334)
297 2dy1_A Elongation factor G; tr 98.1 3.2E-07 1.1E-11 114.2 -0.1 105 1065-1172 3-111 (665)
298 2bbw_A Adenylate kinase 4, AK4 98.1 3.2E-07 1.1E-11 100.0 -0.6 68 1070-1141 26-97 (246)
299 1n0w_A DNA repair protein RAD5 98.1 1.6E-06 5.6E-11 93.9 4.4 69 1067-1142 20-96 (243)
300 3nwj_A ATSK2; P loop, shikimat 98.1 4.1E-07 1.4E-11 98.7 -0.6 52 383-436 17-72 (250)
301 2dhr_A FTSH; AAA+ protein, hex 98.0 2.1E-07 7.1E-12 110.9 -3.8 128 399-552 53-188 (499)
302 2qtf_A Protein HFLX, GTP-bindi 98.0 1.9E-06 6.6E-11 99.0 4.1 143 414-569 181-352 (364)
303 3t34_A Dynamin-related protein 98.0 2.7E-06 9.2E-11 98.2 4.8 45 400-447 25-71 (360)
304 3cr8_A Sulfate adenylyltranfer 98.0 3E-07 1E-11 110.9 -3.4 90 1066-1160 364-468 (552)
305 3kta_A Chromosome segregation 98.0 8.5E-07 2.9E-11 91.7 0.3 99 1062-1162 18-136 (182)
306 3lda_A DNA repair protein RAD5 98.0 2.5E-06 8.6E-11 98.9 4.1 70 1067-1143 174-251 (400)
307 3vaa_A Shikimate kinase, SK; s 98.0 2E-06 6.7E-11 90.4 2.8 45 392-436 5-49 (199)
308 4eun_A Thermoresistant glucoki 98.0 1.1E-06 3.7E-11 92.5 0.7 58 407-469 24-81 (200)
309 3tau_A Guanylate kinase, GMP k 98.0 2.3E-06 7.9E-11 90.6 3.2 67 410-479 6-83 (208)
310 1svm_A Large T antigen; AAA+ f 98.0 1.7E-06 5.8E-11 99.4 2.2 65 1059-1131 157-221 (377)
311 3uie_A Adenylyl-sulfate kinase 98.0 3.4E-07 1.2E-11 96.4 -3.7 51 399-450 12-64 (200)
312 1zu4_A FTSY; GTPase, signal re 97.9 2.9E-06 9.9E-11 95.6 3.3 68 402-469 95-172 (320)
313 2j41_A Guanylate kinase; GMP, 97.9 2.8E-06 9.5E-11 89.7 2.9 35 407-441 1-35 (207)
314 3cr8_A Sulfate adenylyltranfer 97.9 8.2E-07 2.8E-11 107.2 -2.0 71 407-482 364-446 (552)
315 2w0m_A SSO2452; RECA, SSPF, un 97.9 1.7E-06 5.9E-11 93.0 0.7 68 1058-1128 9-80 (235)
316 3kta_A Chromosome segregation 97.9 3.8E-06 1.3E-10 86.7 2.2 66 403-469 18-89 (182)
317 1knq_A Gluconate kinase; ALFA/ 97.8 6.9E-06 2.4E-10 84.2 3.7 55 1069-1129 6-61 (175)
318 3hr8_A Protein RECA; alpha and 97.8 5.5E-05 1.9E-09 86.0 11.0 58 408-468 57-115 (356)
319 2kjq_A DNAA-related protein; s 97.8 1.5E-05 5.1E-10 79.3 5.4 47 1060-1112 30-78 (149)
320 3tqc_A Pantothenate kinase; bi 97.8 6.8E-07 2.3E-11 100.3 -5.1 124 400-555 74-211 (321)
321 1ls1_A Signal recognition part 97.7 6.1E-06 2.1E-10 92.1 1.2 63 1043-1112 77-139 (295)
322 2e87_A Hypothetical protein PH 97.7 9.2E-05 3.2E-09 85.1 10.8 61 521-582 230-291 (357)
323 2xau_A PRE-mRNA-splicing facto 97.7 2.7E-05 9.1E-10 98.5 6.8 65 521-585 189-256 (773)
324 1rz3_A Hypothetical protein rb 97.7 1.3E-05 4.5E-10 84.2 3.1 49 1067-1115 18-66 (201)
325 4a1f_A DNAB helicase, replicat 97.7 5.9E-05 2E-09 85.1 8.2 108 400-554 34-141 (338)
326 3ice_A Transcription terminati 97.7 7.3E-06 2.5E-10 92.2 0.5 54 381-436 131-198 (422)
327 3tqc_A Pantothenate kinase; bi 97.6 1.4E-05 4.7E-10 89.7 2.4 51 1059-1109 74-132 (321)
328 1jjv_A Dephospho-COA kinase; P 97.6 2.6E-05 8.9E-10 82.2 4.0 70 523-595 60-132 (206)
329 2z43_A DNA repair and recombin 97.6 3.9E-05 1.3E-09 87.0 5.5 29 408-436 103-131 (324)
330 1udx_A The GTP-binding protein 97.5 2E-05 6.9E-10 91.7 2.1 34 1061-1094 147-180 (416)
331 3m6a_A ATP-dependent protease 97.5 2.1E-05 7.2E-10 95.5 2.1 47 400-447 97-143 (543)
332 2pez_A Bifunctional 3'-phospho 97.5 1.7E-05 5.8E-10 81.6 0.8 42 1069-1111 3-46 (179)
333 2cvh_A DNA repair and recombin 97.5 2.8E-05 9.4E-10 82.7 2.5 57 1059-1119 7-64 (220)
334 1oix_A RAS-related protein RAB 97.5 1.6E-05 5.4E-10 82.8 0.3 38 1073-1110 31-79 (191)
335 1vma_A Cell division protein F 97.5 3E-05 1E-09 86.6 2.5 64 1064-1127 97-166 (306)
336 2ffh_A Protein (FFH); SRP54, s 97.5 0.00026 8.8E-09 82.4 10.2 149 403-579 91-246 (425)
337 1sxj_E Activator 1 40 kDa subu 97.4 4.7E-05 1.6E-09 87.5 3.5 57 1073-1131 38-95 (354)
338 3kl4_A SRP54, signal recogniti 97.4 0.00014 4.8E-09 84.7 7.5 39 411-449 96-134 (433)
339 1rz3_A Hypothetical protein rb 97.4 3.4E-05 1.2E-09 81.0 2.0 44 409-452 19-62 (201)
340 3r20_A Cytidylate kinase; stru 97.4 1.4E-05 5E-10 85.2 -1.0 70 1071-1140 9-96 (233)
341 1wb9_A DNA mismatch repair pro 97.4 3.7E-05 1.3E-09 96.8 2.4 85 1041-1142 576-666 (800)
342 2qor_A Guanylate kinase; phosp 97.4 2.6E-05 9E-10 82.1 0.6 69 1067-1138 8-87 (204)
343 2dhr_A FTSH; AAA+ protein, hex 97.4 7.1E-05 2.4E-09 89.1 4.3 91 1043-1140 41-133 (499)
344 2vp4_A Deoxynucleoside kinase; 97.3 7E-05 2.4E-09 80.4 2.9 42 406-451 14-55 (230)
345 1f6b_A SAR1; gtpases, N-termin 97.3 5.1E-05 1.7E-09 79.4 1.6 58 1049-1109 6-71 (198)
346 1fnn_A CDC6P, cell division co 97.3 0.00083 2.8E-08 77.9 12.0 29 411-439 41-71 (389)
347 1ni3_A YCHF GTPase, YCHF GTP-b 97.3 0.0001 3.4E-09 85.0 4.0 42 1067-1108 16-69 (392)
348 2f9l_A RAB11B, member RAS onco 97.3 6E-05 2.1E-09 78.8 1.9 37 1073-1109 7-54 (199)
349 3thx_A DNA mismatch repair pro 97.3 0.00013 4.6E-09 92.9 5.2 61 1041-1101 630-700 (934)
350 3t34_A Dynamin-related protein 97.3 6.8E-05 2.3E-09 86.4 1.7 43 1059-1104 25-69 (360)
351 1knq_A Gluconate kinase; ALFA/ 97.2 0.0001 3.5E-09 75.3 2.7 38 410-451 6-43 (175)
352 2p67_A LAO/AO transport system 97.2 5.6E-05 1.9E-09 86.3 0.8 53 1059-1111 44-96 (341)
353 2px0_A Flagellar biosynthesis 97.2 0.00012 4.2E-09 81.4 3.5 44 1069-1112 103-147 (296)
354 1mky_A Probable GTP-binding pr 97.2 0.00011 3.9E-09 86.9 3.3 69 1072-1140 181-262 (439)
355 3ec2_A DNA replication protein 97.2 5.8E-05 2E-09 77.6 0.6 37 1065-1101 32-68 (180)
356 2jaq_A Deoxyguanosine kinase; 97.2 3.7E-05 1.3E-09 80.7 -1.0 69 1073-1141 2-86 (205)
357 3m6a_A ATP-dependent protease 97.2 8.7E-05 3E-09 90.2 1.3 82 1043-1128 84-165 (543)
358 1sxj_C Activator 1 40 kDa subu 97.2 8.7E-05 3E-09 84.8 1.3 44 399-442 31-76 (340)
359 1uf9_A TT1252 protein; P-loop, 97.2 7.2E-05 2.5E-09 78.4 0.5 81 1072-1165 9-93 (203)
360 1m7g_A Adenylylsulfate kinase; 97.1 8.1E-05 2.8E-09 78.7 0.8 45 1066-1110 20-66 (211)
361 3k1j_A LON protease, ATP-depen 97.1 0.00011 3.7E-09 90.7 1.9 65 1059-1128 48-113 (604)
362 4ad8_A DNA repair protein RECN 97.1 0.00012 4E-09 88.7 2.0 72 1060-1132 50-160 (517)
363 2www_A Methylmalonic aciduria 97.1 0.00015 5E-09 83.0 2.5 44 1069-1112 72-115 (349)
364 4eaq_A DTMP kinase, thymidylat 97.1 0.00027 9.4E-09 75.6 4.1 44 1061-1105 13-59 (229)
365 3bh0_A DNAB-like replicative h 97.0 0.00042 1.4E-08 78.1 5.5 107 400-552 56-163 (315)
366 2pez_A Bifunctional 3'-phospho 97.0 6.9E-05 2.4E-09 76.9 -0.9 39 410-449 3-43 (179)
367 1m2o_B GTP-binding protein SAR 97.0 0.00027 9.4E-09 73.2 3.6 49 1060-1109 13-69 (190)
368 3thx_B DNA mismatch repair pro 97.0 0.00019 6.6E-09 91.2 2.3 51 1041-1093 639-695 (918)
369 3b9p_A CG5977-PA, isoform A; A 97.0 0.0021 7.3E-08 71.6 10.4 31 525-555 98-128 (297)
370 1ypw_A Transitional endoplasmi 97.0 0.00017 5.9E-09 91.6 1.5 64 1062-1127 502-565 (806)
371 2gj8_A MNME, tRNA modification 97.0 0.00034 1.2E-08 71.1 3.5 41 1069-1109 2-54 (172)
372 1kag_A SKI, shikimate kinase I 97.0 0.00031 1.1E-08 71.5 3.1 35 1070-1108 3-37 (173)
373 3lxx_A GTPase IMAP family memb 97.0 0.0039 1.3E-07 67.0 12.0 28 414-441 31-58 (239)
374 1v5w_A DMC1, meiotic recombina 96.9 0.0018 6.2E-08 73.7 9.2 28 408-435 118-145 (343)
375 2ffh_A Protein (FFH); SRP54, s 96.9 0.00038 1.3E-08 80.9 3.4 64 1043-1113 77-140 (425)
376 2p67_A LAO/AO transport system 96.9 0.00016 5.3E-09 82.6 0.0 48 400-447 44-91 (341)
377 1w1w_A Structural maintenance 96.9 0.00052 1.8E-08 81.0 4.3 50 1042-1100 6-55 (430)
378 2o5v_A DNA replication and rep 96.8 0.00067 2.3E-08 77.3 4.9 33 1060-1093 16-48 (359)
379 2z4s_A Chromosomal replication 96.8 0.0013 4.6E-08 77.5 7.7 42 540-581 194-237 (440)
380 1mky_A Probable GTP-binding pr 96.8 0.00048 1.7E-08 81.5 3.9 57 414-470 182-250 (439)
381 1lv7_A FTSH; alpha/beta domain 96.8 0.0038 1.3E-07 67.9 10.7 42 402-447 37-78 (257)
382 1ega_A Protein (GTP-binding pr 96.8 0.00048 1.7E-08 77.0 3.3 25 411-435 7-31 (301)
383 2dr3_A UPF0273 protein PH0284; 96.8 0.00021 7.2E-09 77.3 0.3 68 1060-1128 11-80 (247)
384 2qby_A CDC6 homolog 1, cell di 96.8 0.00044 1.5E-08 80.0 2.9 31 410-440 43-73 (386)
385 3llm_A ATP-dependent RNA helic 96.8 0.0012 4.2E-08 70.8 6.1 128 409-572 73-209 (235)
386 4eaq_A DTMP kinase, thymidylat 96.8 0.00048 1.6E-08 73.7 2.7 43 402-445 13-58 (229)
387 3hr8_A Protein RECA; alpha and 96.8 0.0005 1.7E-08 78.1 3.0 69 1067-1138 57-127 (356)
388 2www_A Methylmalonic aciduria 96.7 0.0004 1.4E-08 79.4 2.0 40 411-450 73-112 (349)
389 1f6b_A SAR1; gtpases, N-termin 96.7 0.00039 1.3E-08 72.5 1.7 42 390-434 6-47 (198)
390 1kag_A SKI, shikimate kinase I 96.7 0.00064 2.2E-08 69.1 3.2 33 411-447 3-35 (173)
391 2qag_A Septin-2, protein NEDD5 96.7 0.00022 7.5E-09 81.9 -0.5 55 1039-1102 14-68 (361)
392 1j8m_F SRP54, signal recogniti 96.7 0.00041 1.4E-08 77.2 1.7 64 1043-1112 75-139 (297)
393 1ex7_A Guanylate kinase; subst 96.7 0.00062 2.1E-08 69.9 2.9 74 1074-1157 4-90 (186)
394 2w58_A DNAI, primosome compone 96.7 0.002 6.8E-08 67.2 6.7 27 413-439 55-81 (202)
395 1nlf_A Regulatory protein REPA 96.7 0.00062 2.1E-08 75.3 2.9 30 1067-1096 26-55 (279)
396 2qtf_A Protein HFLX, GTP-bindi 96.7 0.00054 1.8E-08 78.6 2.4 50 1073-1128 181-241 (364)
397 2qor_A Guanylate kinase; phosp 96.6 0.00036 1.2E-08 73.2 0.5 29 409-437 9-37 (204)
398 1m7g_A Adenylylsulfate kinase; 96.6 0.00029 1E-08 74.4 -0.2 41 407-447 20-62 (211)
399 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0008 2.7E-08 77.4 3.4 32 1060-1092 13-44 (365)
400 3bos_A Putative DNA replicatio 96.6 0.0014 4.8E-08 70.2 4.9 28 411-438 51-78 (242)
401 1sxj_C Activator 1 40 kDa subu 96.6 0.0002 6.7E-09 81.9 -2.1 73 1059-1131 32-107 (340)
402 2yvu_A Probable adenylyl-sulfa 96.6 0.00049 1.7E-08 71.0 0.9 45 1066-1110 8-53 (186)
403 1y63_A LMAJ004144AAA protein; 96.5 0.0011 3.7E-08 68.3 3.3 32 1063-1094 2-33 (184)
404 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0014 4.8E-08 64.9 3.9 31 403-434 15-45 (149)
405 1l8q_A Chromosomal replication 96.5 0.0034 1.1E-07 71.0 7.6 29 411-439 36-64 (324)
406 1u94_A RECA protein, recombina 96.5 0.0094 3.2E-07 67.9 11.0 37 400-437 49-88 (356)
407 1m2o_B GTP-binding protein SAR 96.5 0.0014 4.9E-08 67.6 3.9 33 401-434 13-45 (190)
408 2p5t_B PEZT; postsegregational 96.5 0.0011 3.8E-08 72.0 3.1 48 1061-1111 23-70 (253)
409 2ius_A DNA translocase FTSK; n 96.4 0.0013 4.6E-08 78.0 3.8 56 1063-1118 159-216 (512)
410 3h4m_A Proteasome-activating n 96.4 0.0062 2.1E-07 67.2 9.0 28 409-436 48-75 (285)
411 2gj8_A MNME, tRNA modification 96.4 0.0017 5.7E-08 66.0 3.8 27 410-436 2-28 (172)
412 4dcu_A GTP-binding protein ENG 96.4 0.0045 1.5E-07 73.5 8.1 56 526-584 88-144 (456)
413 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0013 4.5E-08 75.4 3.3 41 1067-1107 18-69 (396)
414 1lv7_A FTSH; alpha/beta domain 96.4 0.0011 3.7E-08 72.3 2.3 64 1060-1127 36-99 (257)
415 1ypw_A Transitional endoplasmi 96.4 0.00072 2.5E-08 86.0 1.0 62 1066-1129 233-294 (806)
416 2dby_A GTP-binding protein; GD 96.3 0.001 3.5E-08 76.1 2.0 59 1073-1163 3-61 (368)
417 1np6_A Molybdopterin-guanine d 96.3 0.0017 5.7E-08 66.1 3.1 38 1072-1109 7-47 (174)
418 3t61_A Gluconokinase; PSI-biol 96.3 0.0015 5E-08 68.4 2.8 36 1071-1110 18-53 (202)
419 3cf0_A Transitional endoplasmi 96.3 0.0055 1.9E-07 68.4 7.6 113 406-587 43-170 (301)
420 3r20_A Cytidylate kinase; stru 96.3 0.0003 1E-08 75.0 -2.8 25 412-436 9-33 (233)
421 2wji_A Ferrous iron transport 96.2 0.0026 9E-08 63.9 4.2 23 1072-1094 4-26 (165)
422 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0024 8.2E-08 63.2 3.8 33 1063-1096 16-49 (149)
423 1sxj_D Activator 1 41 kDa subu 96.2 0.001 3.5E-08 76.1 0.8 43 540-583 133-175 (353)
424 4fcw_A Chaperone protein CLPB; 96.2 0.011 3.6E-07 66.2 9.1 32 412-443 47-78 (311)
425 1j8m_F SRP54, signal recogniti 96.1 0.0011 3.6E-08 73.8 0.7 45 405-450 92-136 (297)
426 1jjv_A Dephospho-COA kinase; P 96.1 0.0018 6.2E-08 67.8 2.3 32 1073-1109 4-35 (206)
427 3n70_A Transport activator; si 96.1 0.014 4.7E-07 57.3 8.6 32 410-441 22-53 (145)
428 1y63_A LMAJ004144AAA protein; 96.1 0.0025 8.5E-08 65.5 3.2 32 404-435 2-33 (184)
429 2wjg_A FEOB, ferrous iron tran 96.1 0.0023 7.7E-08 65.7 2.8 37 1072-1108 8-55 (188)
430 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0031 1.1E-07 72.4 3.3 28 408-435 18-45 (396)
431 2yvu_A Probable adenylyl-sulfa 95.9 0.0027 9.2E-08 65.3 2.4 35 409-443 10-44 (186)
432 1ko7_A HPR kinase/phosphatase; 95.9 0.0035 1.2E-07 69.5 3.1 58 1060-1118 134-196 (314)
433 1np6_A Molybdopterin-guanine d 95.7 0.0038 1.3E-07 63.4 2.6 28 412-439 6-33 (174)
434 2wji_A Ferrous iron transport 95.7 0.0071 2.4E-07 60.6 4.6 23 414-436 5-27 (165)
435 2zej_A Dardarin, leucine-rich 95.7 0.0047 1.6E-07 63.3 3.3 23 1073-1095 4-26 (184)
436 2jaq_A Deoxyguanosine kinase; 95.7 0.00066 2.2E-08 71.0 -3.3 23 414-436 2-24 (205)
437 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.017 5.8E-07 64.0 7.7 28 408-435 119-146 (331)
438 1njg_A DNA polymerase III subu 95.7 0.014 4.6E-07 62.2 6.9 45 539-584 125-169 (250)
439 2p5t_B PEZT; postsegregational 95.6 0.0036 1.2E-07 68.0 2.2 41 408-450 28-68 (253)
440 3ihw_A Centg3; RAS, centaurin, 95.6 0.0076 2.6E-07 61.7 4.6 36 1073-1108 22-66 (184)
441 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0022 7.4E-08 72.1 0.2 37 1059-1095 10-48 (359)
442 2qag_A Septin-2, protein NEDD5 95.6 0.0012 4.1E-08 75.7 -2.0 56 381-445 15-70 (361)
443 2if2_A Dephospho-COA kinase; a 95.6 0.0061 2.1E-07 63.6 3.6 21 1073-1093 3-23 (204)
444 3t61_A Gluconokinase; PSI-biol 95.6 0.004 1.4E-07 65.0 2.1 32 412-447 18-49 (202)
445 3qks_A DNA double-strand break 95.5 0.0069 2.4E-07 63.3 3.9 30 403-433 15-44 (203)
446 3lxx_A GTPase IMAP family memb 95.5 0.0091 3.1E-07 64.1 4.9 28 1073-1100 31-58 (239)
447 3cm0_A Adenylate kinase; ATP-b 95.5 0.0063 2.2E-07 62.4 3.4 27 1069-1095 2-28 (186)
448 1jal_A YCHF protein; nucleotid 95.5 0.0092 3.1E-07 67.8 5.0 36 1071-1106 2-48 (363)
449 2wjg_A FEOB, ferrous iron tran 95.5 0.006 2.1E-07 62.4 3.2 22 414-435 9-30 (188)
450 4ag6_A VIRB4 ATPase, type IV s 95.5 0.0065 2.2E-07 70.6 3.8 61 1058-1122 20-83 (392)
451 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.059 2E-06 58.3 11.0 26 411-436 38-63 (262)
452 3dm5_A SRP54, signal recogniti 95.4 0.065 2.2E-06 62.3 11.7 29 411-439 99-127 (443)
453 2q6t_A DNAB replication FORK h 95.4 0.023 8E-07 67.0 8.0 107 400-552 188-294 (444)
454 1ega_A Protein (GTP-binding pr 95.3 0.0052 1.8E-07 68.6 2.2 25 1070-1094 7-31 (301)
455 1v5w_A DMC1, meiotic recombina 95.3 0.0086 2.9E-07 68.1 3.9 67 1067-1142 118-194 (343)
456 1qhx_A CPT, protein (chloramph 95.3 0.0087 3E-07 60.8 3.5 26 1071-1096 3-28 (178)
457 1fzq_A ADP-ribosylation factor 95.3 0.0076 2.6E-07 61.5 3.0 37 1072-1108 17-61 (181)
458 2z43_A DNA repair and recombin 95.3 0.01 3.4E-07 67.0 4.3 42 1067-1108 103-151 (324)
459 2zej_A Dardarin, leucine-rich 95.3 0.0085 2.9E-07 61.3 3.3 25 414-438 4-28 (184)
460 1xjc_A MOBB protein homolog; s 95.2 0.0069 2.4E-07 60.9 2.5 36 1072-1107 5-43 (169)
461 2b8t_A Thymidine kinase; deoxy 95.2 0.016 5.6E-07 61.1 5.5 51 540-594 89-150 (223)
462 3d8b_A Fidgetin-like protein 1 95.2 0.05 1.7E-06 62.1 10.1 27 410-436 115-141 (357)
463 2ga8_A Hypothetical 39.9 kDa p 95.2 0.0028 9.5E-08 71.3 -0.6 37 400-436 10-48 (359)
464 1gtv_A TMK, thymidylate kinase 95.2 0.0028 9.5E-08 66.7 -0.6 26 1073-1098 2-27 (214)
465 3trf_A Shikimate kinase, SK; a 95.1 0.0098 3.3E-07 60.9 3.4 26 1070-1095 4-29 (185)
466 3kb2_A SPBC2 prophage-derived 95.1 0.0091 3.1E-07 60.2 3.0 24 1073-1096 3-26 (173)
467 2if2_A Dephospho-COA kinase; a 95.1 0.0088 3E-07 62.4 2.9 21 414-434 3-23 (204)
468 2v1u_A Cell division control p 95.0 0.03 1E-06 64.4 7.6 28 410-437 42-69 (387)
469 2zr9_A Protein RECA, recombina 95.0 0.016 5.4E-07 65.9 5.0 62 1067-1131 57-119 (349)
470 1qhx_A CPT, protein (chloramph 95.0 0.012 4E-07 59.8 3.5 26 412-437 3-28 (178)
471 3uk6_A RUVB-like 2; hexameric 95.0 0.045 1.5E-06 62.7 8.8 38 410-447 68-105 (368)
472 3qks_A DNA double-strand break 95.0 0.013 4.4E-07 61.2 3.8 29 1063-1092 16-44 (203)
473 3kl4_A SRP54, signal recogniti 95.0 0.0074 2.5E-07 70.2 2.0 42 1070-1111 96-137 (433)
474 3t15_A Ribulose bisphosphate c 95.0 0.043 1.5E-06 60.8 8.2 24 413-436 37-60 (293)
475 1gvn_B Zeta; postsegregational 94.9 0.015 5.1E-07 64.3 4.3 36 1070-1107 32-67 (287)
476 1gvn_B Zeta; postsegregational 94.9 0.015 5E-07 64.4 4.1 35 411-447 32-66 (287)
477 1vht_A Dephospho-COA kinase; s 94.9 0.014 4.9E-07 61.5 3.9 32 1070-1106 3-34 (218)
478 1kht_A Adenylate kinase; phosp 94.9 0.013 4.5E-07 60.1 3.5 26 1071-1096 3-28 (192)
479 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.12 4.1E-06 58.0 11.7 27 410-436 43-69 (322)
480 3syl_A Protein CBBX; photosynt 94.8 0.11 3.7E-06 57.8 11.2 26 411-436 66-91 (309)
481 3ihw_A Centg3; RAS, centaurin, 94.8 0.022 7.4E-07 58.3 4.9 34 414-447 22-64 (184)
482 2v54_A DTMP kinase, thymidylat 94.8 0.014 4.9E-07 60.6 3.6 27 1069-1095 2-28 (204)
483 3cm0_A Adenylate kinase; ATP-b 94.8 0.012 4E-07 60.3 2.7 27 410-436 2-28 (186)
484 3lw7_A Adenylate kinase relate 94.7 0.014 4.9E-07 58.7 3.2 19 1073-1091 3-21 (179)
485 1q3t_A Cytidylate kinase; nucl 94.7 0.015 5.1E-07 62.3 3.5 26 1068-1093 13-38 (236)
486 2chg_A Replication factor C sm 94.7 0.037 1.3E-06 57.9 6.6 23 414-436 40-62 (226)
487 1ex7_A Guanylate kinase; subst 94.7 0.013 4.6E-07 60.0 2.9 23 414-436 3-25 (186)
488 2bwj_A Adenylate kinase 5; pho 94.7 0.0069 2.4E-07 62.8 0.6 30 1066-1095 7-36 (199)
489 2rhm_A Putative kinase; P-loop 94.6 0.014 4.7E-07 60.1 2.9 27 1069-1095 3-29 (193)
490 3iij_A Coilin-interacting nucl 94.6 0.011 3.8E-07 60.2 2.1 27 1069-1095 9-35 (180)
491 3cbq_A GTP-binding protein REM 94.6 0.014 4.7E-07 60.5 2.8 22 1073-1094 25-46 (195)
492 4ag6_A VIRB4 ATPase, type IV s 94.6 0.015 5.3E-07 67.4 3.5 36 411-446 34-69 (392)
493 1jal_A YCHF protein; nucleotid 94.5 0.024 8.3E-07 64.3 4.8 36 412-447 2-48 (363)
494 2lkc_A Translation initiation 94.5 0.034 1.2E-06 56.0 5.5 25 1069-1093 6-30 (178)
495 3kb2_A SPBC2 prophage-derived 94.5 0.017 5.7E-07 58.2 3.1 23 414-436 3-25 (173)
496 2c95_A Adenylate kinase 1; tra 94.5 0.016 5.4E-07 59.8 2.9 27 1069-1095 7-33 (196)
497 3lxw_A GTPase IMAP family memb 94.5 0.017 5.7E-07 62.4 3.2 23 1072-1094 22-44 (247)
498 2r6a_A DNAB helicase, replicat 94.4 0.0098 3.4E-07 70.5 1.3 59 1059-1120 191-250 (454)
499 1xp8_A RECA protein, recombina 94.4 0.19 6.4E-06 57.3 11.9 29 408-436 70-98 (366)
500 1uf9_A TT1252 protein; P-loop, 94.4 0.018 6E-07 59.8 3.0 31 412-447 8-38 (203)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.3e-163 Score=1623.11 Aligned_cols=1130 Identities=35% Similarity=0.609 Sum_probs=959.9
Q ss_pred cccccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----------------CCchhhHHH
Q 000984 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN-----------------QNNSETVDK 101 (1198)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 101 (1198)
+...+++++++|+|++++++++++++++++++.+++.|++++++|.+++.+... .....+.+.
T Consensus 55 ~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1321)
T 4f4c_A 55 EVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHD 134 (1321)
T ss_dssp CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHH
T ss_pred cccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHH
Confidence 334478999999999999999999999999999999999999999988865311 011123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHH
Q 000984 102 VSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181 (1198)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~ 181 (1198)
+..+++++++++++.+++.+++.+++.+.+.|+..++|.+++++++++|++|||+. ++|++++|+++|++.+++.+...
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~ 213 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDK 213 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888899999999999999999999999999999999999999999974 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCc
Q 000984 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTG 261 (1198)
Q Consensus 182 ~~~~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 261 (1198)
+..++..+.+++++++++++++|.+++++++.+|+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|++
T Consensus 214 l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 293 (1321)
T 4f4c_A 214 IGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG 293 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000984 262 EKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS 341 (1198)
Q Consensus 262 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 341 (1198)
|+.+.++|.+..++..+...+.....++...+..++..+.+++++|+|..++..+.++.|.+++++.++.....++..+.
T Consensus 294 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~ 373 (1321)
T 4f4c_A 294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAG 373 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888888888899999999999999999999998888888888999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCC
Q 000984 342 PCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421 (1198)
Q Consensus 342 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~ 421 (1198)
+.+..+..+..++.|++++++.+|+.+........+.+.+|.|+|+||+|+||+++++++|+|+||+|++||++||||||
T Consensus 374 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~s 453 (1321)
T 4f4c_A 374 PQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS 453 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecC
Confidence 99999999999999999999887765543333334445578899999999999877789999999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcH
Q 000984 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501 (1198)
Q Consensus 422 GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~ 501 (1198)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+||||++||||||+||.|+++++++++||+.|++
T Consensus 454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533 (1321)
T ss_dssp SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCc
Q 000984 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1198)
Q Consensus 502 ~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~ 581 (1198)
+++|+.||+|++|.|||+|.+||||||||||||||+|++|+||||||||||||+++++.++++|+++.++||+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred hhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCC
Q 000984 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661 (1198)
Q Consensus 582 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1198)
++++.||+|+||++|+|+|+|+|+||+++ ++.|+++++.|......+...+.....+.. ......+...........
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 690 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENS--VARQTSEHEGLSRQASEM 690 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhhcccccccccccccccccc--cccccccccccccccccc
Confidence 99999999999999999999999999987 899999998875443221101000000000 000000000000000000
Q ss_pred CCCCCCCCcccccccCCCCCCCCcccCCCCCCC-------CCCCcccCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHH
Q 000984 662 SSIGNSSRHSISVSFGLPSGQFADTALGEPAGP-------SQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVI 734 (1198)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1198)
.......... .... ....+....+...... ...++.......+++++++.+++++.++++++++++.++.
T Consensus 691 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 767 (1321)
T 4f4c_A 691 DDIMNRVRSS-TIGS--ITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFI 767 (1321)
T ss_dssp ----------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGH
T ss_pred cchhhhhhcc-cccc--ccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000 0000000000000000 0000111122345566677788888888888888888889
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Q 000984 735 LPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814 (1198)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~ 814 (1198)
.+.+++++..+++.+..++........+|.++|++++++..++.+++.+++...+.++..++|.++|++++++|++|||.
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~ 847 (1321)
T 4f4c_A 768 YPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDS 847 (1321)
T ss_dssp HHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTS
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc
Confidence 99999999999887765443333445678888999999999999999999999999999999999999999999999997
Q ss_pred CCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000984 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADA 894 (1198)
Q Consensus 815 ~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~ 894 (1198)
+++++|+|+||+++|++.++..++..+..++..++.++++++++++++|++++++++++|+++++.+++.++.+....+.
T Consensus 848 ~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1321)
T 4f4c_A 848 PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKS 927 (1321)
T ss_dssp GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTT
T ss_pred CCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999988888877777666677
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000984 895 KMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVED 974 (1198)
Q Consensus 895 ~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 974 (1198)
++..++....+.|+++|+++||+|++|+++.++|.+..+...+..++.....+...++...+..+..++++++|..++..
T Consensus 928 ~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ 1007 (1321)
T 4f4c_A 928 ASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIIT 1007 (1321)
T ss_dssp SSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 77788888999999999999999999999999999999999999999888888888888888888889999999999988
Q ss_pred CCcCHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEEC
Q 000984 975 GKATFS--DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY 1052 (1198)
Q Consensus 975 g~~t~g--~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y 1052 (1198)
+..+++ .++.++.++.....++..+..+...++.+..+++|++++++.+++.+.... ..+.++..|+|+|+||+|+|
T Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y 1086 (1321)
T 4f4c_A 1008 DPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAY 1086 (1321)
T ss_dssp SSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeC
Confidence 876654 444444555555567778888889999999999999999998877654332 23345568999999999999
Q ss_pred CCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccccccc
Q 000984 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 1132 (1198)
Q Consensus 1053 ~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~ 1132 (1198)
|++++.+||+||||+|+|||+||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+
T Consensus 1087 ~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A 1087 PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp TTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS
T ss_pred CCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC
Confidence 98777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCC-CCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1133 DTIRANIAYGK-GGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1133 gTIreNI~~g~-~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|||||||+||. ++++||||||+||+.|++||||++||+||||.|
T Consensus 1167 gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRV 1211 (1321)
T ss_dssp EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE
T ss_pred ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe
Confidence 99999999984 357999999999999999999999999999987
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-142 Score=1418.07 Aligned_cols=1118 Identities=40% Similarity=0.699 Sum_probs=942.7
Q ss_pred cccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------C-c--------hhhHHHHHH
Q 000984 41 TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQ-------N-N--------SETVDKVSK 104 (1198)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~--------~~~~~~~~~ 104 (1198)
...++++++++|.++.++.+++++++++++.+++.|+++++++.+++.+.... . . ....+....
T Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1284)
T 3g5u_A 30 KPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTT 109 (1284)
T ss_dssp ---CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHH
Confidence 34567889999998888888888999999999999999999999888753210 0 0 001123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHH
Q 000984 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGK 184 (1198)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~ 184 (1198)
+.+++++++++.+++.+++.+++.+.+.+...++|.+++++++++|++|||+ +++|+++||+++|++.+++.++..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888999999999999999999999999999999999999997 599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHH
Q 000984 185 FLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264 (1198)
Q Consensus 185 ~~~~~~~~i~~~i~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 264 (1198)
++..+.++++.++++++++|.+++++++++|+++++..++.+..++..++.++..++..+.+.|+++|+++||+|++|+.
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 265 AMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCL 344 (1198)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 344 (1198)
+.++|.+..++..+...+.....++..++..++..+.+++.+|+|+.++..+.++.|.+++++..++....++..+.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888877777777777777888888889999999999999999988877766666677888888888
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCc
Q 000984 345 SAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSG 424 (1198)
Q Consensus 345 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsG 424 (1198)
..+..+..++.|+++.++.+++.++....+..+++..|.|+++||+|+|+++++.++|+|+||+|++||+++||||||||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsG 428 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCG 428 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCC
Confidence 89999999999999999877654432222222334568899999999998655568999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHH
Q 000984 425 KSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504 (1198)
Q Consensus 425 KStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1198)
||||+++|+|+++|++|+|.+||+|+++++++++|++|+||||+|++|++||+|||.+|.++.++++++++++.++++++
T Consensus 429 KSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~ 508 (1284)
T 3g5u_A 429 KSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508 (1284)
T ss_dssp HHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 505 i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
+..+|+|++|.+|++|.+||||||||||||||++++|+|||||||||+||+++++.+++.++...+++|+|+||||++++
T Consensus 509 i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred HHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCC
Q 000984 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSI 664 (1198)
Q Consensus 585 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1198)
..||+|+||++|+|+|.|+|+||+++ ++.|.+++..+....+.+........ ....... . ...........
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~------~~~~~~~~~~~ 659 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKS-KDEIDNL-D------MSSKDSGSSLI 659 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC-----------------------------------------
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhhhccccccccccccc-ccccccc-c------ccccccccccc
Confidence 99999999999999999999999987 68888887665432211100000000 0000000 0 00000000000
Q ss_pred CCCCCcccccccCCCCCCCCcccCCCCCCCCCCCcccCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 665 GNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISS 744 (1198)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1198)
. ..........+ ...... .......++......+++++.+.+++++.++++++++++.+++.+.+++++..
T Consensus 660 --~-~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1284)
T 3g5u_A 660 --R-RRSTRKSICGP--HDQDRK----LSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSK 730 (1284)
T ss_dssp ---------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --c-ccccccccccc--cccccc----cchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000000 000000 00000001111223344555555666777778888888888888888888888
Q ss_pred HHHhhcCCCc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhH
Q 000984 745 VIETFFKPPH--ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822 (1198)
Q Consensus 745 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i 822 (1198)
+++.+..... .......+|.+++++++++..++.+++.+++...+.++..++|.++|++++++|++|||++++++|+|
T Consensus 731 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l 810 (1284)
T 3g5u_A 731 VVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810 (1284)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHH
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHH
Confidence 8876653321 12233456777788888888899999999999999999999999999999999999999777999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000984 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1198)
Q Consensus 823 ~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1198)
++|+++|++.++..++..+..++..++.+++++++++.++|++++++++++|+++++.++..+++++...+.++..+...
T Consensus 811 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1284)
T 3g5u_A 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888888889
Q ss_pred HHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Q 000984 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982 (1198)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l 982 (1198)
..+.|+++|+++||+|++|+++.++|.+..+...+...+.....+...++...+..+..++++|+|++++..|.++++++
T Consensus 891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 970 (1284)
T 3g5u_A 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV 970 (1284)
T ss_dssp HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 99999999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccc
Q 000984 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFR 1062 (1198)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~ 1062 (1198)
+.++.++.....++..+..+...++++..+++|+.++++.+++.+........+++.+|.|+|+||+|+|+++++.++|+
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~ 1050 (1284)
T 3g5u_A 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQ 1050 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeec
Confidence 99999999999999999999999999999999999999987765432222222334578999999999998665557999
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcC
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1198)
||||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||.||++||+|||++|
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1143 KG-GDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1143 ~~-~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
.+ ...+++++++|++.++++++++++|+||||.|-
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccC
Confidence 54 247999999999999999999999999999863
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-86 Score=884.90 Aligned_cols=576 Identities=34% Similarity=0.575 Sum_probs=482.0
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
...+++++++..+. +..++++++++++.+.+.|.++++++.+++.+..... ........+++++++++++..++.++
T Consensus 737 ~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~i~~~~ 813 (1321)
T 4f4c_A 737 KTNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA--DFLSQGHFWALMFLVLAAAQGICSFL 813 (1321)
T ss_dssp CCCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSS--TTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655543 4455667777778888899999999998887654321 12223344566677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
+.+++.+.+.++..++|..++++++++|++|||+ ++++|+++||+++|++.+++.++..+..++..+..+++.++++++
T Consensus 814 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 814 MTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH
Confidence 9999999999999999999999999999999985 258999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
++|.+++++++++|++++...++.+...+...+..+..++....+.|+++|+++||+|++|+.+.+++.+..+...+...
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888777666655554445555667778889999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGG--QVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~--~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 359 (1198)
+.....++...+...+..+..++.+++|..++..+..+.+ .++.++........++..+......+..+..+++|+++
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~ 1053 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFG 1053 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666666677777888877776655443 33333322222223444555667778889999999999
Q ss_pred HHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
+++.+++.++... ....++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 1054 ~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1054 MLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp HHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred HhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 9988776543322 233455678999999999999877778999999999999999999999999999999999999999
Q ss_pred CCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhc
Q 000984 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVG 517 (1198)
Q Consensus 440 ~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~ 517 (1198)
+|+|.|||+|+++++++++|++|+||||||+||+|||||||.||. +++++++++++|+.++++++|+++|+|+||.||
T Consensus 1133 ~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999999999999999999999999999999999999999984 468899999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
|+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++.+++||+|+||||++++++||+|+|||+|+
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhHhcCCCchhHHHHHHHh
Q 000984 598 IVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 598 i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|+|+|+|+||+++ ++.|++|++.|.
T Consensus 1293 IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1293 IIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp EEEEECHHHHHHC-C-----------
T ss_pred EEEECCHHHHHhC-CcHHHHHHHHHH
Confidence 9999999999997 789999998764
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-80 Score=763.98 Aligned_cols=569 Identities=25% Similarity=0.396 Sum_probs=491.2
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++.+++|.++..+ .+++++++.++..++.+..|++++.+++......+ .+....+.+.+++++++..++.++..+
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 11 SKTLARYLKPYWI-FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD----FSLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp CCCGGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566655443 33445555566666777778889999987543221 122233334445555666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
+..+.+.+...++|.++++++++.|+.+|++ +++|+++||+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNR-FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999997 499999999999999999999988888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888999999999999999999999999999999999988888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++++++|+.++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666666666666677778889999999999999999887777766667777777788888899999999999998765
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.++.. .....++..+.|+++||+|+|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 325 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 325 AIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp SCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred ccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 533221 111223345789999999999743 467999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
||+|+++++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1198)
|||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|+|++.|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hHhcCCCchhHHHHHHHh
Q 000984 606 KLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~ 623 (1198)
|++++ ++.|++++..+.
T Consensus 563 el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 563 ELLEH-CKPYREIYESQF 579 (587)
T ss_dssp HHHHH-CHHHHHHHHHHC
T ss_pred HHHhC-CcHHHHHHHHHh
Confidence 99986 678988887653
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-80 Score=763.28 Aligned_cols=570 Identities=29% Similarity=0.490 Sum_probs=496.9
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
...++++++|+++.++ .+++++++.++..++.+..|++++.+++......+. +....+.+.++++.++..++.++
T Consensus 22 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 96 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTF-TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLILGTIYALTSLLFWL 96 (598)
T ss_dssp HHHHHHHGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG----GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766543 344455556666677777788999999876532221 22333444555666677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+.++....+.++..++|..+++++++.|+++|++ +++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 97 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 175 (598)
T 3qf4_B 97 QGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV 175 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999997 499999999999999999999988888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+
T Consensus 176 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 255 (598)
T 3qf4_B 176 NVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255 (598)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899988888888889999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
.....+....+..++..+.+++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 335 (598)
T 3qf4_B 256 AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD 335 (598)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77776666666666666777778888999988999999998877665555566777788888899999999999999998
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.+.. .....++..+.|+++||+|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 336 ~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 411 (598)
T 3qf4_B 336 LEEEKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411 (598)
T ss_dssp SCCCCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred CCCCCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence 76553221 11222344578999999999964 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++++||||+|++|++||+|||.++.+..++++++++++.++++++++.+|+|++|.+|++|.+
T Consensus 412 i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 491 (598)
T 3qf4_B 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491 (598)
T ss_dssp EEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTT
T ss_pred EEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
||||||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|+|++.|
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHHHHh
Q 000984 603 THSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
+|+|++++ ++.|++++..+.
T Consensus 572 ~~~~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 572 KHDELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp CHHHHHHT-TCHHHHHHHHHH
T ss_pred CHHHHHhC-CCHHHHHHHHHh
Confidence 99999987 788999987654
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.9e-79 Score=756.38 Aligned_cols=570 Identities=31% Similarity=0.424 Sum_probs=489.1
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000984 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV----SKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~ 122 (1198)
+++++|.++..+. +++++++.++..++.++.+++++.+++......... ..... ..+...+++++++..++.++
T Consensus 3 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 3 KRYLQFVKPYKYR-IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT-TDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHGGGHHH-HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655443 334445555555666667778888888765332210 01111 22233334445556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 202 (1198)
+.++..+.+.++..++|.++++++++.|+++|++ +++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999997 499999999999999999998877777778888888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 000984 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1198)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1198)
+|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999988888899998888888899999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000984 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1198)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1198)
...+.+....+..++..+..++.+++|++++..+.++.|.+++++.++.....++..+...+..+..+..+++|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777777666767777778888999999999999999887766666667888888888999999999999999998
Q ss_pred cCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
.+++.++.. ...+.++..+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 766533211 112223345789999999999753 457999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 000984 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~ 522 (1198)
|.+||+|+++++.+++|++++||||+|++|++||+|||.+|.+..++++++++++.++++++++.+|+|++|.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|++|+|++.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhhHhcCCCchhHHHHHHH
Q 000984 603 THSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~ 622 (1198)
+|+|++++ ++.|+++++.|
T Consensus 558 ~~~el~~~-~~~~~~~~~~q 576 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQ 576 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTT
T ss_pred CHHHHHhC-CcHHHHHHHhh
Confidence 99999987 67888887543
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.9e-77 Score=737.44 Aligned_cols=574 Identities=37% Similarity=0.558 Sum_probs=473.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
+++++++.++..+. +++++++.++..++.++.+++++.+++........ ........+...++++.++..++.+++.+
T Consensus 7 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (595)
T 2yl4_A 7 ARKLLGLAYPERRR-LAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTV-DYSDNLTRLCLGLSAVFLCGAAANAIRVY 84 (595)
T ss_dssp HHHHHHHHGGGHHH-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666544333 23344445555556666677888888865422111 00011222223344445556677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
+....+.++..++|..+++++++.|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 85 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 85 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHS-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888999999999999999999999999974 99999999999999999999888888999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989998888888888888888888888889999999999999999999999999999999998888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666666666666667777888999999999999998887777777777888888888899999999999999998765
Q ss_pred CCCccCCCCcccCCCccc-EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEE
Q 000984 366 EIDAYDTKGKILDDIRGD-IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~-i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1198)
+.+... ...+..+..+. |+++||+|+|++++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 324 ~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 324 KLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp SSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred ccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 432211 11111223567 9999999999754345799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCC
Q 000984 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1198)
Q Consensus 445 i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~ 521 (1198)
+||+|+++++.+++|++|+||||+|++|++||+|||.++.+. .++++++++++.++++++++.+|+|++|.+|++|.
T Consensus 403 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~ 482 (595)
T 2yl4_A 403 LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482 (595)
T ss_dssp ETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSC
T ss_pred ECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCC
Confidence 999999999999999999999999999999999999998765 67899999999999999999999999999999999
Q ss_pred CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|++++.
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhhHhcCCCchhHHHHHHHh
Q 000984 602 GTHSKLVEDPEGAYSQLIRLQE 623 (1198)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~ 623 (1198)
|+|+|+++++++.|+++++.|.
T Consensus 563 g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 563 GKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp ECSCC------C----------
T ss_pred CCHHHHHhCCChHHHHHHHHhh
Confidence 9999998755788988887553
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.2e-76 Score=732.70 Aligned_cols=566 Identities=31% Similarity=0.499 Sum_probs=487.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++.+++|.++..+. +++++++.++.+++.+..+++++.+++......+. .......+.+++++++..++.++..+
T Consensus 13 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 13 FKRLWTYIRLYKAG-LVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665544332 33444555566666777777888888875432111 11111222244455667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
+....+.++..++|..+++++++.|+.+|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888999999999999999999999999997 499999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777666666677777778888999999999999999888877777778888888889999999999999999998755
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.++. ..+.++..+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 43211 11112234679999999999743 257999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
||+|+.+++.+++|++++||||+|++|++||+|||.++. ++.++++++++++.++++++++.+|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 999999999999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|++++.|+|
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhHhcCCCchhHHHHHHH
Q 000984 605 SKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1198)
+|++++ ++.|+++++.|
T Consensus 563 ~~l~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQ 579 (582)
T ss_pred HHHHhC-CcHHHHHHHHh
Confidence 999986 67899888765
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1e-76 Score=733.30 Aligned_cols=566 Identities=32% Similarity=0.525 Sum_probs=486.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1198)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1198)
++.+++|.++..+. +++++++.++..++.+..+++++.+++......+ ........+.+++++++..++.++..+
T Consensus 13 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 13 FRRLWPTIAPFKAG-LIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD----RSVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHGGGHHH-HHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT----HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666554333 3344455556666667777788888886542211 111111122244455667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000984 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1198)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 205 (1198)
.....+.++..++|..+++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888999999999999999999999999974 99999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1198)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1198)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998889999888888888888888888888899999999999999999999999999999999998888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000984 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1198)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1198)
..+....+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77776666666666677777888888888899999999888877777778888888889999999999999999998765
Q ss_pred CCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 366 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
+.++ . ..+.++..+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDE-G--KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCC-C--CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccC-C--CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 4321 1 11122335679999999999742 256999999999999999999999999999999999999999999999
Q ss_pred CCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 000984 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1198)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lS 524 (1198)
||+|+++++.+++|++++||||+|++|++||+|||.++. ++.++++++++++.++++++++++|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1198)
||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhHhcCCCchhHHHHHHH
Q 000984 605 SKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1198)
+|++++ ++.|+++++.|
T Consensus 563 ~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp HHHHHH-TSSHHHHHHHT
T ss_pred HHHHHc-CCHHHHHHHHh
Confidence 999876 67888888754
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.7e-75 Score=772.69 Aligned_cols=581 Identities=38% Similarity=0.649 Sum_probs=497.3
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1198)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1198)
..++++++++.++. +..++++++++++.+.+.|..+++++.+++.+...............+.+++++++++..++.++
T Consensus 690 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 768 (1284)
T 3g5u_A 690 PASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFL 768 (1284)
T ss_dssp CCCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666665443 33345566667777788899898998888876543221122233344555666777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1198)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~ 201 (1198)
+.+++.+.+.++..++|..++++++++|++|||. .+++|++++|+++|++.++..++..+..++..+..+++.+++++.
T Consensus 769 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~ 848 (1284)
T 3g5u_A 769 QGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI 848 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999994 258999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000984 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1198)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1198)
++|.+++++++++|+++++..+..++.++...+..+..++....+.|++.|+++||+|++|+.+.++|.+..+...+...
T Consensus 849 ~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~ 928 (1284)
T 3g5u_A 849 YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM 928 (1284)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888777778888888999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1198)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1198)
+...+.+....+...+.++.+++.+|+|+.++..+.++.+.++.++..+.....++..+......+..+..++.|+++.+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 1008 (1284)
T 3g5u_A 929 KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII 1008 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777787777777777888888899999888888888887776655555444555555444555667888999999999
Q ss_pred ccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+.+++.+........+++..|.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|
T Consensus 1009 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1009 EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp HSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred cCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 87766443222222333456789999999999865455799999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCC
Q 000984 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1198)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~ 519 (1198)
+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++.+ ..++++++++++.+++++++..+|+|+||.+||+
T Consensus 1089 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp EEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred EEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 99999999999999999999999999999999999999999875 3678999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEE
Q 000984 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1198)
Q Consensus 520 g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1198)
|.+||||||||+||||||+++|+|||||||||+||+++++.+++.+++..+++|+|+||||++++..||||+||++|+|+
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EecChhhHhcCCCchhHHHHHHHhhc
Q 000984 600 EKGTHSKLVEDPEGAYSQLIRLQEAN 625 (1198)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~~~~~~~ 625 (1198)
|.|+|+||+++ ++.|+++++.|...
T Consensus 1249 ~~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1249 EHGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EEECHHHHHHS-CSHHHHHHHHHC--
T ss_pred EECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 99999999987 78999999877533
No 11
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-59 Score=579.32 Aligned_cols=463 Identities=21% Similarity=0.307 Sum_probs=414.6
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1198)
+++++.+.+++++.+++++++.++.+++....+++++.+++......+ ......+.++++++.++..++.+++.++..
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888888888888888889999999999997653221 122233445555666777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000984 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1198)
Q Consensus 787 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l~ 866 (1198)
+.+.++..++|.++|+|++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHHH
Q 000984 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1198)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1198)
+++++++|+++++.+++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999988888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 000984 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1198)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1198)
....++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999977654
Q ss_pred CCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
++... ....++..|.|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 327 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEADN-ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCTT-CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCCC-ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 32221 11223456889999999999743 45799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|+++++.+++|++|++|||||.||++||+|||++|. ++++++++++|++.++++|++++||+|+||.+
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~ 473 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRV 473 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEE
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHh
Confidence 9999999999999999999999999999999999995 47899999999999999999999999999976
No 12
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.2e-59 Score=575.23 Aligned_cols=463 Identities=25% Similarity=0.370 Sum_probs=419.0
Q ss_pred chhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 705 VPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYF 784 (1198)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1198)
..+++++.+.+++++.++.++++.++.+++....+++++.+++....... ......++++++++.++..++.+++.++
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888888899999999999997754321 1223445666677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000984 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1198)
Q Consensus 785 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~ 864 (1198)
....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|+
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHH
Q 000984 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1198)
Q Consensus 865 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 944 (1198)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC
Q 000984 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1198)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1198)
..+...++..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+......++.+..+++|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 000984 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1025 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I 1104 (1198)
+.+.. .....++..|+|+|+||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 339 ~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 54321 11222345688999999999963 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
||+|+++++.+++|++|++|||||.||++||+|||.+|+ ++++++++++|++.++++++++++|+|+||.+
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 485 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN-PGATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSS-TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCC-CCCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence 999999999999999999999999999999999999995 46899999999999999999999999999975
No 13
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1e-58 Score=571.57 Aligned_cols=465 Identities=24% Similarity=0.335 Sum_probs=414.0
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhh----HHHHHHHHHHHHHHHHHHHHHH
Q 000984 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDS----RFWALIYLALGAGSFLLSPAQS 782 (1198)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 782 (1198)
++++.+.+++++.++.++++.++..++.+..+++++.+++........ ..... ..+.++++++.++..++.+++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (578)
T 4a82_A 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (578)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888888888888888999999999877543211 01111 2233444555667778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000984 783 YFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTAS 862 (1198)
Q Consensus 783 ~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~ 862 (1198)
++..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+..++..++.++++++++++++
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 58999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHH
Q 000984 863 WQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942 (1198)
Q Consensus 863 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 942 (1198)
|++++++++++|+++++.+++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Q 000984 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDR 1022 (1198)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 1022 (1198)
....+...++...+..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 000984 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1198)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I 1102 (1198)
+++.++... ..+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 321 ~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 398 (578)
T 4a82_A 321 DYDIKNGVG-AQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398 (578)
T ss_dssp CCSSCCCTT-CCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred CCcccCCCC-ccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence 766432211 11223356889999999999753 4579999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceee
Q 000984 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1198)
Q Consensus 1103 ~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~ 1177 (1198)
.+||+|+++++.+++|++|++|||||.||++||+|||.+|. ++.+++++++|++.++++++++++|+|+||.+-
T Consensus 399 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp EETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhc
Confidence 99999999999999999999999999999999999999995 468999999999999999999999999999863
No 14
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.6e-57 Score=561.99 Aligned_cols=461 Identities=25% Similarity=0.348 Sum_probs=409.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA-LIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
+++++.+.+++++.+++++++.++.+++....++++..+++....... . ....+. ++++++.++..++.+++.++.
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777778888888888888999998887643211 1 112222 335556677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
...+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888899988888899999999999999999999999999999999999999999999999999998
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1198)
.....++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1026 ~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
.++. ..+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+|
T Consensus 328 ~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 328 RDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred CCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 3211 11122335789999999999743 2469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|+|+++++.+++|++|++|||||.+|++|++|||.+|..++.+++++++|++.++++++++++|+||||.+
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~ 474 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999985236789999999999999999999999999976
No 15
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.2e-57 Score=562.27 Aligned_cols=467 Identities=29% Similarity=0.465 Sum_probs=408.1
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000984 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1198)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1198)
+++++.+.+++++.+++++++.++.+++.+..+++++.+++....... ........+.++++++.++..++.+++.++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (595)
T 2yl4_A 7 ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLM 86 (595)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777777888888888888888888886542111 0001122334445556666778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000984 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1198)
Q Consensus 786 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~l 865 (1198)
...+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|++
T Consensus 87 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 164 (595)
T 2yl4_A 87 QTSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNL 164 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHHH
Q 000984 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1198)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1198)
++++++++|+++++.+++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+....
T Consensus 165 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 244 (595)
T 2yl4_A 165 ATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 000984 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1198)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1198)
.....++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 324 (595)
T 2yl4_A 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888788888889999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCCCCCcccCCccc-EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 000984 1026 IDPSDESGTILEDVKGE-IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1026 ~~~~~~~~~~~~~~~G~-I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I 1104 (1198)
.+... ...++++..|+ |+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 325 ~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 325 LPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 43211 11111234578 99999999997543346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCC--CCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG--DATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~--~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
||+|+++++.+++|++|++|||||.+|++||+|||.+|.+. +.++++++++++.+++++++++||+|+||.+
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ 477 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBC
T ss_pred CCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999998532 2789999999999999999999999999976
No 16
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.3e-57 Score=560.67 Aligned_cols=462 Identities=27% Similarity=0.410 Sum_probs=409.8
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000984 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW-ALIYLALGAGSFLLSPAQSYF 784 (1198)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 784 (1198)
.+++++.+.+++++.+++++++.++.+++....+++++.+++....... . ....+ .++++++.++..++.+++.++
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777888888888888888999999987643211 1 11222 233555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000984 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1198)
Q Consensus 785 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~i~~~~~~i~~li~~~~~~~~ 864 (1198)
....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHhcchHHHHHHHHHHhhhHHHHhHHHHH
Q 000984 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1198)
Q Consensus 865 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 944 (1198)
+++++++++|+++++..++.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888889999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCC
Q 000984 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1198)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1198)
......++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 000984 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1198)
Q Consensus 1025 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I 1104 (1198)
+.+.. ..+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 53221 11122345789999999999742 246999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
||+|+++++.+++|++|++|||||.+|++|++|||.+|..++.+++++++|++.++++++++++|+|+||.+
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~ 474 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 474 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccc
Confidence 999999999999999999999999999999999999985236789999999999999999999999999986
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.5e-59 Score=524.32 Aligned_cols=277 Identities=42% Similarity=0.654 Sum_probs=248.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 000984 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1198)
Q Consensus 344 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1198)
...+..+.++++|+++.++.+++..... ...+.+...+.|+++||+|+|+. +.++|+|+||+|++||+++|||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 3445556677889998887655432211 11122233578999999999964 35799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 000984 424 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503 (1198)
Q Consensus 424 GKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~ 503 (1198)
|||||+++|+|+++|++|+|.+||.|+.+++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.+++.+
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcch
Q 000984 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1198)
Q Consensus 504 ~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1198)
++..+|+|++|.+|++|.+||||||||++|||||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||+++
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHHhh
Q 000984 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1198)
Q Consensus 584 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1198)
+..||+|++|++|+|++.|+|+++++. ++.|+++++.+..
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 999999999999999999999999986 7899999887653
No 18
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.7e-50 Score=441.01 Aligned_cols=239 Identities=48% Similarity=0.794 Sum_probs=222.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 2469999999999999999999999999999999999999999999999999998888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+||||+|.+|.+||+||+.++.+..++++++++++.+++.+++..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999976556778889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHH
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999998877899999999999988899999999999999999999987656778777653
No 19
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.6e-49 Score=438.37 Aligned_cols=239 Identities=49% Similarity=0.789 Sum_probs=219.8
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|+++|++|+|+....+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+||||+|.+|+.||+||+.++.....++++.++++.+++.+++..+|+|+++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999976555677888889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHH
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1198)
++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999988778999999999999888999999999999999999999875 5677777654
Q ss_pred H
Q 000984 622 Q 622 (1198)
Q Consensus 622 ~ 622 (1198)
+
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 20
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.9e-49 Score=435.61 Aligned_cols=239 Identities=42% Similarity=0.732 Sum_probs=216.9
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.+.|+++|++++|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996422256999999999999999999999999999999999999999999999999998888888889
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||||+|.+|..||+|||.++.+.... +++.++++..++.+.++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999997654443 56677777788889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++... .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 7899999999999888999999999999999999999875 467777
Q ss_pred HHH
Q 000984 618 LIR 620 (1198)
Q Consensus 618 ~~~ 620 (1198)
++.
T Consensus 253 ~~~ 255 (271)
T 2ixe_A 253 MVE 255 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 21
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-49 Score=433.96 Aligned_cols=234 Identities=45% Similarity=0.774 Sum_probs=215.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 356999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEcCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
||||+|.+|.+|++|||.++ .+..++++++++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 44566788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHH
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1198)
+||||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. ...|..++.
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 99999999999999999999999887778999999999998888999999999999999999999764 345555543
No 22
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=442.85 Aligned_cols=237 Identities=27% Similarity=0.483 Sum_probs=219.4
Q ss_pred CCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH
Q 000984 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 378 ~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
++..+.|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.++.+++.+.
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 3345679999999999632 3579999999999999999999999999999999999998 8999999999999999999
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|++|+||+|++.+|..||+||+.+.. ...+++++++++.+++.+.+.+.|.++++.++++|.+||||||||++|||||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998543 3567889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHH
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1198)
+++|++||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||||++|++|+|++.|+++++.+++...|..
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999998877789999999999988889999999999999999999999876665543
No 23
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.3e-46 Score=404.56 Aligned_cols=214 Identities=28% Similarity=0.482 Sum_probs=194.7
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|+++|++++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35799999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 462 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
|+|+||+|++|.+|++||+.++.. ....+..++++.+++.+.+..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998753 3445566677778888899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHH-HHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcC
Q 000984 542 RILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
++||||||||+||+.+.+.+.+. +++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999886 4555567999999999998888999999999999999999999765
No 24
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.5e-46 Score=407.29 Aligned_cols=223 Identities=32% Similarity=0.546 Sum_probs=199.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 35699999999999999999999999999999999999999999999999 59
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 463 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
+||||+|++++.|++|||.++.. ...++..++.+.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754 23445566777777778888899999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHH---HHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHH
Q 000984 543 ILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1198)
+||||||||+||+.+.+.+.+.+. +..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.|..++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999998884 34458999999999999888999999999999999999999875 56676666
Q ss_pred HH
Q 000984 620 RL 621 (1198)
Q Consensus 620 ~~ 621 (1198)
..
T Consensus 227 ~~ 228 (237)
T 2cbz_A 227 RT 228 (237)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 25
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.7e-45 Score=412.88 Aligned_cols=229 Identities=30% Similarity=0.506 Sum_probs=192.2
Q ss_pred ccEEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---
Q 000984 382 GDIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW--- 457 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~--- 457 (1198)
..|+++|++++|+... ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246899999999999999999999999999999999999999999999999999888655
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
+|++||||+|+|.+|. .||+||+.++.. ..+.++..+.. .+.++.+ |+.........+||||||||++||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v-----~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV-----TELLSLV--GLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH-----HHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 4788999999999886 599999998531 12232222111 1112222 555566777889999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|+|++.|+++++..++
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988743 7999999999999875 9999999999999999999999876
Q ss_pred CchhHH
Q 000984 612 EGAYSQ 617 (1198)
Q Consensus 612 ~~~~~~ 617 (1198)
...+.+
T Consensus 256 ~~~~~~ 261 (366)
T 3tui_C 256 KTPLAQ 261 (366)
T ss_dssp CSHHHH
T ss_pred CcHHHH
Confidence 655543
No 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-44 Score=401.33 Aligned_cols=219 Identities=26% Similarity=0.510 Sum_probs=186.1
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1198)
.|+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999642 45999999999999999999999999999999999999999999999999984 344567889
Q ss_pred ceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+||||||+| .+|..||+||+.|+... .+.++..+.+ .+.++.+ |++........+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV-----DNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999986321 2333322221 1223333 55556667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|+.+|++||||||||+||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998875 38999999999999865 999999999999999999998764
No 27
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.9e-45 Score=395.99 Aligned_cols=217 Identities=28% Similarity=0.437 Sum_probs=179.6
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH----
Q 000984 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI---- 458 (1198)
Q Consensus 384 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~---- 458 (1198)
|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHhcCC-----CCCCHHH-HHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHH
Q 000984 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK-----DDATTEE-IRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQR 530 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~Ni~~~~-----~~~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqr 530 (1198)
|++|+||+|+|.+|.. ||+||+.++. .....++ ..++. +.+..+ |+... ......+||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~~LSgGq~QR 153 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL------ECLKMA--ELEERFANHKPNQLSGGQQQR 153 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHH------HHHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHH------HHHHHC--CCChhhhhCChhhCCHHHHHH
Confidence 4569999999999875 9999998742 1122222 22222 122222 44433 366778899999999
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHh
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++|||||+++|++||||||||+||+.+...+.+.++++.+ ++|+|+|||+++....||+|++|++|++++.++.+++.
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999999988753 89999999999977779999999999999999877653
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-44 Score=389.88 Aligned_cols=219 Identities=25% Similarity=0.436 Sum_probs=186.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH-hcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1198)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776655 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 462 IGLVSQEPVLFTG-SIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
++|+||+|.+|.+ |++||+.++. +....++..+.+ .+.++.++ |++...++...+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999876 9999999864 211222222211 23344443 45666777888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
+|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 5799999999998775 5999999999999999999998753
No 29
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.8e-43 Score=401.87 Aligned_cols=220 Identities=31% Similarity=0.541 Sum_probs=185.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC--cCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~ 460 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ......++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999953 569999999999999999999999999999999999999999999999999832 22334467
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC---CH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA---TT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~---~~---~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+||||+|++.+|. .||+|||.|+.... .. +++.++++.+ |++........+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----------GISELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH-----------TCGGGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHH
Confidence 8999999999995 69999999975321 12 2233333332 55556677778999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||+.+|++||||||||+||+.....+.+.+.++. .++|+|+|||+++.+.. ||||++|++|+|++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999888776653 47899999999998765 999999999999999999999987
Q ss_pred CCchhH
Q 000984 611 PEGAYS 616 (1198)
Q Consensus 611 ~~~~~~ 616 (1198)
+...+.
T Consensus 230 p~~~~~ 235 (359)
T 3fvq_A 230 PADLDA 235 (359)
T ss_dssp CSCHHH
T ss_pred cccHHH
Confidence 655444
No 30
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.3e-43 Score=386.08 Aligned_cols=219 Identities=33% Similarity=0.553 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHhc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 46999999999999999999999999999999999999999999999999985 344566788
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 461 KIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
+|+||+|++.+|.. |++||+.++. .....++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999998865 9999998842 1122222111 112233443 55555667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999998874 47899999999999874 9999999999999999999997653
No 31
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.3e-43 Score=389.75 Aligned_cols=213 Identities=27% Similarity=0.426 Sum_probs=185.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999963 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|++|++.+ +..||+||+.++..... .+++.++++.+ |+.........+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT-----------DCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT-----------TCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999976 57899999998753221 23344444433 333344555668999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHh
Q 000984 538 LK------DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 538 ~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
++ +|++||||||||+||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 469999999999986 49999999999999999999986
Q ss_pred c
Q 000984 609 E 609 (1198)
Q Consensus 609 ~ 609 (1198)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 4
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.7e-43 Score=402.95 Aligned_cols=223 Identities=26% Similarity=0.459 Sum_probs=189.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887765 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .||+|||.|+.. ..+.++..+.. .+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v-----~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-----NQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHH-----HHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 99999999995 599999998632 12333222211 1223333 55556677778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchhH
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1198)
+|++||||||||+||+.....+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++++...+...|.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v 230 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHH
Confidence 9999999999999999999999999988753 7999999999998765 999999999999999999999987665554
Q ss_pred H
Q 000984 617 Q 617 (1198)
Q Consensus 617 ~ 617 (1198)
.
T Consensus 231 ~ 231 (381)
T 3rlf_A 231 A 231 (381)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-43 Score=383.65 Aligned_cols=217 Identities=28% Similarity=0.454 Sum_probs=183.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999952 469999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|+|+||+|.+|.. |++||+.++.. ....++..+. +.+.++.+ |++........+||||||||++|||||+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM-----VERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999998865 99999987421 1122211111 11122222 5555556667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhc
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999998875 47899999999999876 99999999999999999999864
No 34
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-42 Score=382.71 Aligned_cols=220 Identities=30% Similarity=0.530 Sum_probs=183.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~---------- 452 (1198)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999953 469999999999999999999999999999999999999999999999999862
Q ss_pred cCH---HHHhcceEEEcCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCC
Q 000984 453 FQL---QWIRKKIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLS 524 (1198)
Q Consensus 453 ~~~---~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lS 524 (1198)
.+. ..+|++++||+|++.+|.. ||+||+.++. .....++..+ .+.+.++.+ |++.. ......+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE-----RALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHH-----HHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhcCCcccCC
Confidence 333 3467889999999998865 9999998742 1122221111 112233333 55555 566778899
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1198)
||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998875 4789999999999986 49999999999999999
Q ss_pred ChhhHhcCCC
Q 000984 603 THSKLVEDPE 612 (1198)
Q Consensus 603 ~~~~l~~~~~ 612 (1198)
+++++..++.
T Consensus 236 ~~~~~~~~~~ 245 (262)
T 1b0u_A 236 DPEQVFGNPQ 245 (262)
T ss_dssp CHHHHHHSCC
T ss_pred CHHHHHhCcc
Confidence 9999986543
No 35
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.1e-42 Score=434.78 Aligned_cols=196 Identities=25% Similarity=0.339 Sum_probs=157.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.+...|++++|++ +.+|+|+||++++|++++|+||||||||||+++|+| |+| +|.+... +.++
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 5778899999963 469999999999999999999999999999999996 554 5544321 1247
Q ss_pred EEEcCCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 463 GLVSQEP-VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 463 ~~v~Q~~-~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|++|++ .++ ..|+++|+.+..... .+++.++++..++. +........+||||||||++|||||+.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~----------~~~~~~~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT----------DEMIAMPISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC----------HHHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC----------hhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999986 333 569999998621111 45555555555441 1123344457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhhHh
Q 000984 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 608 (1198)
|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999999999999999999999988 68999999999999875 9999999999997 578887764
No 36
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-42 Score=383.58 Aligned_cols=214 Identities=23% Similarity=0.398 Sum_probs=183.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcc
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ...|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999987764 345778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--C-------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--A-------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~-------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSg 525 (1198)
|+||||+|.+|. .|++||+.++... . ..++.. ..+.+.++.+ |++....+...+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999998885 6999999986422 1 111111 1223445555 677777788889999
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 000984 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1198)
|||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999999999988754 799999999999886 599999999999999999
Q ss_pred hhh
Q 000984 604 HSK 606 (1198)
Q Consensus 604 ~~~ 606 (1198)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 988
No 37
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.2e-43 Score=376.16 Aligned_cols=211 Identities=26% Similarity=0.403 Sum_probs=177.6
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH---Hh
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998876543 34
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
++|+||||+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE-----RGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 68999999998885 699999987521 111111111 112233333 5555566677899999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1198)
||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999998874 4789999999999887799999999999999886
No 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=9.5e-43 Score=388.54 Aligned_cols=209 Identities=28% Similarity=0.484 Sum_probs=175.7
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1198)
.+.|+++|++|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3469999999864 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|+|+||+|.+|.+|++||+. +.. ....+..++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 699999999999999999998 543 344555667777888888999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHH-HHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhc
Q 000984 541 PRILLLDEATSALDAESEKVVQEAL-DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|++||||||||+||+.+.+.+.+.+ +++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999998864 44456899999999999988899999999999999999999865
No 39
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-42 Score=394.30 Aligned_cols=217 Identities=30% Similarity=0.527 Sum_probs=186.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC--H----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT--T----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~--~----~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+||+|++.+|. .||+||+.|+..... . +++.+++ +.+ |++........+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l---------~~~--~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIA---------RKL--LIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHH---------HHT--TCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHH---------HHc--CCchHhcCChhhCCHHHHHHHHHHH
Confidence 99999999985 599999999753221 1 2233333 333 5555566667799999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCC
Q 000984 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1198)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988753 789999999999875 599999999999999999999988755
Q ss_pred chh
Q 000984 613 GAY 615 (1198)
Q Consensus 613 ~~~ 615 (1198)
..|
T Consensus 227 ~~~ 229 (359)
T 2yyz_A 227 NMF 229 (359)
T ss_dssp BHH
T ss_pred cHH
Confidence 444
No 40
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-42 Score=383.58 Aligned_cols=215 Identities=30% Similarity=0.523 Sum_probs=182.4
Q ss_pred EEEEeEEEEcCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
|+++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998643 67889
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 462 IGLVSQEP--VLFTGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|+|++|+| .++..|++||+.++... ...+++.++++..++.. .........+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---------DSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCH---------HHHTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCC---------cccccCChhhCCHHHHHHHHHH
Confidence 99999997 56789999999986421 12345555555554430 0333445568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
|||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998874 47899999999999875 999999999999999999988754
No 41
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-42 Score=386.80 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=183.6
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC--CcCHHHHh
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIR 459 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r 459 (1198)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999987 77777888
Q ss_pred cceEEEcCCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 460 KKIGLVSQEPVL-FTG--SIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 460 ~~i~~v~Q~~~l-~~~--ti~~Ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
++|+|++|+|.+ |.. |++||+.++... ..++...+ +.+.++.+ |++........+|||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~--gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE------AHQLLKLV--GMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHH------HHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHH------HHHHHHHc--CChhHhcCChhhCCHHHHH
Confidence 999999999864 544 999999986421 11211111 12233333 5665667777899999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeE--EEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTT--VIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~--i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1198)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988753 7899 99999999885 59999999999999999999
Q ss_pred hHhc
Q 000984 606 KLVE 609 (1198)
Q Consensus 606 ~l~~ 609 (1198)
++.+
T Consensus 249 ~~~~ 252 (279)
T 2ihy_A 249 DILT 252 (279)
T ss_dssp HHCS
T ss_pred HHhc
Confidence 8864
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-42 Score=374.12 Aligned_cols=213 Identities=32% Similarity=0.481 Sum_probs=180.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+. +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ..|++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999942 59999999999 999999999999999999999999999999999999987643 3467899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~ 542 (1198)
|+||+|.+|.. |++||+.++........- ...+.+.++.+ |++........+||||||||++||||++++|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVER-----DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHH-----HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchH-----HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999875 999999987533221111 11122334444 55555566677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCC
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
+|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999988743 799999999999875 59999999999999999999987653
No 43
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-42 Score=394.59 Aligned_cols=221 Identities=36% Similarity=0.525 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .||+|||.|+.. ....++..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999996 599999998631 1122221111 11223333 55555566677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 229 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 9999999999999999999999999988753 789999999999875 599999999999999999999988755444
No 44
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.6e-42 Score=393.31 Aligned_cols=221 Identities=26% Similarity=0.453 Sum_probs=182.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 4699999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+||+|++.+|. .||+|||.|+... ...++..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999985 5999999997532 222222111 12233333 56666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 237 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 789999999999875 599999999999999999999988755444
No 45
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.3e-42 Score=392.21 Aligned_cols=223 Identities=29% Similarity=0.519 Sum_probs=186.3
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999931 2469999999999999999999999999999999999999999999999999987654 3678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
|+||+|++.+|. .||+|||.|+.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA-----RVRELLRFM--RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999986 599999998632 112222111 111223333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++...|
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999988753 7899999999998765 99999999999999999999987654443
No 46
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.1e-42 Score=390.67 Aligned_cols=215 Identities=30% Similarity=0.513 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
|+++|++++|+ +. +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 9999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 464 LVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 464 ~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
||+|++.+|.. ||+||+.|+.. ...++++.++++.. |++........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~-----------~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999965 99999998631 11224444444443 44444556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcCCCchh
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1198)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 789999999999875 599999999999999999999987655444
No 47
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8.5e-42 Score=373.06 Aligned_cols=208 Identities=23% Similarity=0.345 Sum_probs=182.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4889999985 4899999999999999999999999999999999999999 9999999999888888889999
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 463 GLVSQEPVLFT-GSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+|++|+|.+|. .|++||+.++.. ..+.+++.++++.. |++........+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999886 499999998642 12344445444444 444455666789999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhc
Q 000984 541 PR-------ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 541 ~~-------illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
|+ +|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 4789999999999984 599999999999999999999864
No 48
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.1e-42 Score=393.27 Aligned_cols=223 Identities=29% Similarity=0.454 Sum_probs=185.7
Q ss_pred cEEEEeEEEEcCCCCCCc--cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC---HHH
Q 000984 383 DIELRDVYFSYPARPNEQ--IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQW 457 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~--~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~ 457 (1198)
.|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999953 45 999999999999999999999999999999999999999999999999986521 223
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
.+++|+||+|++.+|. .||+||+.|+.... ..++..+. +.+.++.+ |++........+||||||||++||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKIL--DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 4678999999999996 59999999975321 22222111 11223333 555555666779999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhHhcCC
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1198)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 7899999999998764 9999999999999999999998775
Q ss_pred Cchh
Q 000984 612 EGAY 615 (1198)
Q Consensus 612 ~~~~ 615 (1198)
...|
T Consensus 233 ~~~~ 236 (353)
T 1oxx_K 233 VSIQ 236 (353)
T ss_dssp SSHH
T ss_pred ccHH
Confidence 5444
No 49
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=7.6e-42 Score=393.32 Aligned_cols=221 Identities=28% Similarity=0.490 Sum_probs=184.5
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC------cCHH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE------FQLQ 456 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~------~~~~ 456 (1198)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 4899999999953 469999999999999999999999999999999999999999999999999865 4433
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH
Q 000984 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l 533 (1198)
+++|+||+|++.+|. .||+||+.|+.. ....++..+. +.+.++.+ |++........+||||||||++|
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELL--GLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCCcccCCHHHHHHHHH
Confidence 578999999999985 699999998632 1222222111 11122222 55555666778999999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHhcC
Q 000984 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1198)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1198)
||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999875 5999999999999999999999887
Q ss_pred CCchh
Q 000984 611 PEGAY 615 (1198)
Q Consensus 611 ~~~~~ 615 (1198)
+...|
T Consensus 231 p~~~~ 235 (372)
T 1g29_1 231 PANTF 235 (372)
T ss_dssp CSBHH
T ss_pred cccHH
Confidence 55444
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.1e-42 Score=423.28 Aligned_cols=197 Identities=21% Similarity=0.345 Sum_probs=155.3
Q ss_pred cEEE--------EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE---------EE
Q 000984 383 DIEL--------RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LI 445 (1198)
Q Consensus 383 ~i~~--------~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i---------~i 445 (1198)
.|++ +|++++|+.. ..+|+|+| ++++||+++|+||||||||||+++|.|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 8999999632 25899999 999999999999999999999999999999999996 35
Q ss_pred CCeecCCcCHHH--HhcceEEEcCCC----CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCC
Q 000984 446 DGINLKEFQLQW--IRKKIGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1198)
Q Consensus 446 ~g~~~~~~~~~~--~r~~i~~v~Q~~----~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~ 519 (1198)
+|.++.+..... .+..+++++|.. .++.+|++||+..... .+++.++++.. |++......
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~l-----------gL~~~~~~~ 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKEL-----------ELENVLDRE 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHT-----------TCTTGGGSB
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHc-----------CCCchhCCC
Confidence 665543321111 134688888874 3455699999975221 22333444333 444445555
Q ss_pred CCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 520 g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
..+||||||||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+++
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 678999999999999999999999999999999999999999999988753 7999999999998865 9999999753
No 51
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.3e-41 Score=373.60 Aligned_cols=214 Identities=28% Similarity=0.444 Sum_probs=171.4
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHH-h
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1198)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999953 4699999999999999999999999999999999998 88999999999999988876655 4
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCC---C--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCC-CChHHHHHH
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD---D--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQ-LSGGQKQRI 531 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~---~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~-lSgGqkqri 531 (1198)
..++|++|+|.+|.+ |++||+.++.. . ...++..+ .+.+.++.+ |++ ........+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 569999999998864 99999986421 0 11111111 111222322 453 233444456 999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 606 (1198)
+|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999998875 47899999999999876 59999999999999999873
No 52
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-41 Score=372.33 Aligned_cols=207 Identities=17% Similarity=0.313 Sum_probs=178.2
Q ss_pred EEEEeEEEEcCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 384 IELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 384 i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
|+++|++++|+.. ..+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999998754 23 7789
Q ss_pred E-EEcCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhc
Q 000984 463 G-LVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 463 ~-~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+ |+||+|.+ ..|++||+.++.. ...++++.+++ +.+ |++ ...+....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEML---------KAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHH---------HHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHH---------HHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 9999999987532 22344444433 333 565 6667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh-ccC-EEEEEeCCEEEEecChhhHhc
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NAD-MIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
++|++|||||||++||+.+.+.+.+.++++.+ |+|++||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988754 9999999999875 599 999999999999999999864
No 53
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.7e-40 Score=367.67 Aligned_cols=216 Identities=25% Similarity=0.364 Sum_probs=178.0
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCeEEECCeecCCcCHHHH-h
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1198)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 25699999999999999999999999999999999999 57899999999999988776655 4
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCC-CCChHH
Q 000984 460 KKIGLVSQEPVLFTG-SIKDNIAYGK---------DDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGT-QLSGGQ 527 (1198)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g~-~lSgGq 527 (1198)
..++|++|+|.+|.+ |+++|+.++. +..+.++..+ .+.+.++.+ |+++.. ..... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999998865 8999987531 1112222111 122334444 565433 33333 599999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecCh
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTH 604 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 604 (1198)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998874 47899999999998875 899999999999999998
Q ss_pred hhHh
Q 000984 605 SKLV 608 (1198)
Q Consensus 605 ~~l~ 608 (1198)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8763
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.2e-41 Score=410.76 Aligned_cols=195 Identities=22% Similarity=0.354 Sum_probs=150.7
Q ss_pred EE-EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE---------EECCeecCCcC
Q 000984 385 EL-RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGINLKEFQ 454 (1198)
Q Consensus 385 ~~-~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i---------~i~g~~~~~~~ 454 (1198)
++ +|++++|+.. ..+|+|+| +|++||+++|+||||||||||+++|.|+++|++|++ .++|.++....
T Consensus 22 ~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 22 QLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp --CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 44 5899999642 25899999 999999999999999999999999999999999995 35665443221
Q ss_pred HHH--HhcceEEEcCCCCC----CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 455 LQW--IRKKIGLVSQEPVL----FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 455 ~~~--~r~~i~~v~Q~~~l----~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
... .+..+++++|+... +.+|+++|+..... .+++.++++.. |++........+||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~l-----------gl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKAL-----------ELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHT-----------TCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHc-----------CCChhhhCChhhCCHHHH
Confidence 111 12468899987543 34699999864211 12333344333 444444555668999999
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999998764 47899999999998875 9999999753
No 55
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1e-40 Score=366.16 Aligned_cols=200 Identities=29% Similarity=0.423 Sum_probs=170.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+ ++++
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccE
Confidence 4899999999962 246999999999999999999999999999999999999999999982 4589
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC-------CCH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 463 GLVSQEPVLF-TGSIKDNIAYGKDD-------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~Ni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
+|+||+|.+| ..|++||+.++... ... +++.+++ +.+ |++........+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL---------DYL--NLTHLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHH---------HHT--TCGGGTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHH---------HHc--CChHHhcCChhhCCHHHHHHH
Confidence 9999999887 67999999986321 122 2223333 333 555555667789999999999
Q ss_pred hHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhhHh
Q 000984 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999988754 789999999999885 599999999999 9999999986
Q ss_pred c
Q 000984 609 E 609 (1198)
Q Consensus 609 ~ 609 (1198)
+
T Consensus 217 ~ 217 (253)
T 2nq2_C 217 T 217 (253)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-40 Score=352.27 Aligned_cols=194 Identities=22% Similarity=0.395 Sum_probs=163.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..|+++
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 2 6999999999999999999999999999999999999999999999999875 257889
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 463 GLVSQEPVLFTG-SIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|+||+|.+|.+ |++||+.++.. ....+++.++++ .+ |++.. ++.+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~---------~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE---------SV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHH---------HT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHH---------Hc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999998875 99999987521 112334444333 33 56555 677889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1198)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 47899999999999877 56655 556666
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.9e-40 Score=416.73 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=135.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHH---------------------HHHhccCCCC-------CCeEEECCeec
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVI---------------------SLIERFYDPQ-------AGEVLIDGINL 450 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~---------------------~~l~g~~~~~-------~G~i~i~g~~~ 450 (1198)
..+|+||||+|++||+++|+||||||||||+ +.+.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8888888888 45566666554
Q ss_pred CCcCHHHHhcceEEEcCCCCCC--------------------cccHHHHHhcCCCC-CCH--HH-----HHHHHHHhcHH
Q 000984 451 KEFQLQWIRKKIGLVSQEPVLF--------------------TGSIKDNIAYGKDD-ATT--EE-----IRVATELANAA 502 (1198)
Q Consensus 451 ~~~~~~~~r~~i~~v~Q~~~l~--------------------~~ti~~Ni~~~~~~-~~~--~~-----~~~~~~~~~~~ 502 (1198)
.. ..+..+++++|.+.++ ..|++||+.+.... ... .+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 2244566776655332 45899999874211 011 11 11111111
Q ss_pred HHHHhCCCCccch-hcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEe
Q 000984 503 KFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1198)
Q Consensus 503 ~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~it 578 (1198)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +|||||||++||+.+...+.+.|+++. +++|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123333 44432 345567899999999999999999998 999999999999999999999998764 478999999
Q ss_pred cCcchhhccCEEEEE------eCCEEEEecChhhHhc
Q 000984 579 HRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 579 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1198)
|+++.+..||+|++| ++|++++.|+++++.+
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 999988889999999 8899999998877653
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.8e-40 Score=397.47 Aligned_cols=191 Identities=21% Similarity=0.388 Sum_probs=147.0
Q ss_pred eEEEEcCCCCCCccccceeEEEe-CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE-----------EECCeecCCcCH
Q 000984 388 DVYFSYPARPNEQIFSGFSISIS-SGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQL 455 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~-~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-----------~i~g~~~~~~~~ 455 (1198)
+++.+|+.+ -++...|.++ +||++||+||||||||||+++|+|++.|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567889532 3444455554 899999999999999999999999999999998 567766543221
Q ss_pred HHH------hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 000984 456 QWI------RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1198)
Q Consensus 456 ~~~------r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkq 529 (1198)
... ...+.+++|.|.++.+|+++++..... .++..++++.. |++........+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELL-----------NMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHT-----------TCGGGTTSBGGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHc-----------CCchhhcCChhhCCHHHHH
Confidence 111 223556666677788899998863221 22333444443 3333344555689999999
Q ss_pred HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
|++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999999999999999999999999999998778999999999998875 9999999764
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=379.52 Aligned_cols=194 Identities=20% Similarity=0.359 Sum_probs=144.7
Q ss_pred eEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE-----------EECCeecCCcCHH
Q 000984 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQLQ 456 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-----------~i~g~~~~~~~~~ 456 (1198)
|++++|+.. ...|++++ .+++||+++|+||||||||||+++|.|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568899643 35778777 689999999999999999999999999999999998 2334333222222
Q ss_pred HHhcceE--EEcCCCC----CCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 457 WIRKKIG--LVSQEPV----LFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 457 ~~r~~i~--~v~Q~~~----l~~---~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
.++..+. +.+|... .+. .++.+++.... ....+++.++++.. |++........+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKIL-----------QLENVLKRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHH-----------TCTGGGGSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHc-----------CCcchhCCChHHCCHHH
Confidence 2333332 3333221 111 26677665432 22345555544443 45555667778999999
Q ss_pred HHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
|||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999988754 7899999999999876 9999999865
No 60
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.8e-34 Score=318.96 Aligned_cols=170 Identities=34% Similarity=0.568 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCC
Q 000984 1003 SSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082 (1198)
Q Consensus 1003 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGS 1082 (1198)
+..++.+.++++|++++++.+++...... ..+.+...|.|+|+||+|+|++ +.+||+||||+|++||++||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 45677788899999999987665432211 1112234678999999999974 34699999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchH
Q 000984 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162 (1198)
Q Consensus 1083 GKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~ 1162 (1198)
|||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||+|.||++||+|||.||.. .++++++++|++.++++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999954 68899999999999999
Q ss_pred HHHHhcccccccee
Q 000984 1163 KFICSLQQVRTSRL 1176 (1198)
Q Consensus 1163 dfI~~LP~g~dt~v 1176 (1198)
+++..+|+||+|.+
T Consensus 171 ~~i~~lp~gl~t~~ 184 (306)
T 3nh6_A 171 DAIMAFPEGYRTQV 184 (306)
T ss_dssp HHHHHSTTGGGCEE
T ss_pred HHHHhccchhhhHh
Confidence 99999999999976
No 61
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=3.3e-32 Score=333.18 Aligned_cols=199 Identities=25% Similarity=0.348 Sum_probs=165.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .++
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999952 36899999999999999999999999999999999999999999762 379
Q ss_pred EEEcCCCCC-CcccHHHHHhcC-CCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYG-KDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~-~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||++.. +..||++|+... .... ..+.+.+ .++.+ |+.........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE---------LLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH---------THHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH---------HHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999865 578999998753 1100 1111222 22222 44444566667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhhHhc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 609 (1198)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++...|+|+++..
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998874 47999999999999875 999999986 88888999988764
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=2.7e-32 Score=331.04 Aligned_cols=199 Identities=24% Similarity=0.356 Sum_probs=165.9
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999952 36899999999999999999999999999999999999999999762 379
Q ss_pred EEEcCCCCC-CcccHHHHHhcC-CCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 463 GLVSQEPVL-FTGSIKDNIAYG-KDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~Ni~~~-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+||++.. +..||.+|+... .+. ...+. +.+.++.+ |+.........+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFY---------KTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHH---------HHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHH---------HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 577999988642 110 01111 12233333 55555667778899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhhHhc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 609 (1198)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++...|+++++..
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998874 38999999999999875 999999986 78888999988764
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.2e-31 Score=324.20 Aligned_cols=200 Identities=21% Similarity=0.285 Sum_probs=165.0
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
..++++|+++.|++ ..|++.||++++||+++|+||||||||||+++|+|+++|++|+|.++|. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 35889999999953 4688889999999999999999999999999999999999999998763 6
Q ss_pred eEEEcCCCCC-CcccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 462 IGLVSQEPVL-FTGSIKDNIAYGKDDA---TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 462 i~~v~Q~~~l-~~~ti~~Ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++|+||++.. +..||++|+.+..... ....+.++ ++.+ |+.........+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEV---------TKRL--NLHRLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHT---------TTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHH---------HHHc--CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999864 5789999998643221 11222222 2222 555556667788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhhHh
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLV 608 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~ 608 (1198)
+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...+++.++.
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999998875 47899999999999875 999999986 5666677776653
No 64
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.97 E-value=2.3e-35 Score=328.81 Aligned_cols=218 Identities=19% Similarity=0.263 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccCCCCcccCCCcccEEEEeEEEEcCCCCCCccccceeEEEeCCCE
Q 000984 335 MSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414 (1198)
Q Consensus 335 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~ 414 (1198)
.++..+...+..+..+..+..|+.+.+..+++..... .. ..+..+.|+++||+|+|+ .++|+|+||+|++|++
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~-~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~ 128 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GS-WKSILTFFNYQNIELITF----INALKLWLKGIPKKNC 128 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CC-THHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--Cc-ccccCCeEEEEEEEEEcC----hhhhccceEEecCCCE
Confidence 4455666667778888899999999887644321110 11 011234589999999995 4699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH-HHhcCCCCCCHHHHH
Q 000984 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD-NIAYGKDDATTEEIR 493 (1198)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~-Ni~~~~~~~~~~~~~ 493 (1198)
++|+||||||||||+++|+|++ +|+| ++|++|+|++|.+|+++ ||.++ ++.++
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~-~~~~~---- 182 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALV-DDATH---- 182 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEE-EEECH----
T ss_pred EEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccC-ccccH----
Confidence 9999999999999999999999 7888 56789999999999998 99986 33332
Q ss_pred HHHHHhcHHHHHHh-CCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCC
Q 000984 494 VATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572 (1198)
Q Consensus 494 ~~~~~~~~~~~i~~-l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~ 572 (1198)
+++++++. +|+|++ |.+|||||||| |||++++|+||| ||+||+++++.+..
T Consensus 183 ------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 23456777 899987 77999999999 999999999999 99999999887752
Q ss_pred eEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhcCCCchhHHHHHHH
Q 000984 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1198)
Q Consensus 573 t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1198)
+|||++.+..||+| +|++|+|++.|+++++ ++.|++++..+
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~ 275 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRL 275 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTT
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHc
Confidence 29999999999999 9999999999999999 46777776543
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=1.8e-31 Score=335.87 Aligned_cols=205 Identities=22% Similarity=0.380 Sum_probs=156.3
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcce
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1198)
.|+++|++|+|++. .+++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|. .++
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 49999999999642 256999999999999999999999999999999999999999999999872 258
Q ss_pred EEEcCCCCC-----CcccHHHHHhcCCCC---------------------------------------------------
Q 000984 463 GLVSQEPVL-----FTGSIKDNIAYGKDD--------------------------------------------------- 486 (1198)
Q Consensus 463 ~~v~Q~~~l-----~~~ti~~Ni~~~~~~--------------------------------------------------- 486 (1198)
+|++|++.. ...|+++++.+....
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887621 234666665421000
Q ss_pred ------------------CC--------HHH----HHH---------HHH--------HhcHHHHHHhCCCCccch--hc
Q 000984 487 ------------------AT--------TEE----IRV---------ATE--------LANAAKFIDKLPQGIDTL--VG 517 (1198)
Q Consensus 487 ------------------~~--------~~~----~~~---------~~~--------~~~~~~~i~~l~~g~~t~--v~ 517 (1198)
.+ .++ ..+ +.. ...+.+.++.+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 00 000 000 000 01123344444 66543 35
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhc-cCEEEEEeCC
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1198)
....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 567789999999999999999999999999999999999999999888765 5799999999999864 9999999999
Q ss_pred EEEEecC
Q 000984 597 KIVEKGT 603 (1198)
Q Consensus 597 ~i~~~g~ 603 (1198)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987664
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=317.69 Aligned_cols=198 Identities=23% Similarity=0.384 Sum_probs=161.9
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCC-----CEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSG-----TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g-----~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
++++|+|+.. ..+++|+||++++| |+++|+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5677888642 45899999999999 7899999999999999999999999999973 11 236
Q ss_pred eEEEcCCCC-CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 462 IGLVSQEPV-LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 462 i~~v~Q~~~-l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
++|+||++. .|..|+++|+..... ....+...++++.. |+.........+||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL-----------RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH-----------TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 467899999864221 12233333333322 4444456667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhhHhcC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVED 610 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 610 (1198)
.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+|++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999875 999999996 899999999998763
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.1e-29 Score=318.90 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=149.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh----------------------ccCCCCCCeEEECCeecCCcCHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE----------------------RFYDPQAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~----------------------g~~~~~~G~i~i~g~~~~~~~~~ 456 (1198)
..+|+|+||+|++||+++|+||||||||||+++|+ |+ .+.+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl-~~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGL-EHLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECG-GGCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccc-cccCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998764 22 23456888998887644321
Q ss_pred HHhc-----------------------------------------ceEEEcCCCCC------------------------
Q 000984 457 WIRK-----------------------------------------KIGLVSQEPVL------------------------ 471 (1198)
Q Consensus 457 ~~r~-----------------------------------------~i~~v~Q~~~l------------------------ 471 (1198)
..+. ..+++.|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1100 11233332221
Q ss_pred ---------CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 472 ---------FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 472 ---------~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+..|++||+.+.... . ...++. +.+..+ |+. ...++...+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~--~-~~~~~~------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI--P-KIKRKL------ETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC--H-HHHHHH------HHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh--h-hHHHHH------HHHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 135889999875432 1 111111 223333 343 2346677899999999999999999887
Q ss_pred ---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhhHhcCC
Q 000984 542 ---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 542 ---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 611 (1198)
++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|++.|+++++.+..
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 5999999999999999999999998875 479999999999999889999999 899999999999998754
Q ss_pred C
Q 000984 612 E 612 (1198)
Q Consensus 612 ~ 612 (1198)
.
T Consensus 643 ~ 643 (670)
T 3ux8_A 643 E 643 (670)
T ss_dssp T
T ss_pred c
Confidence 3
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.5e-28 Score=309.85 Aligned_cols=202 Identities=27% Similarity=0.453 Sum_probs=150.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHH---------HHHhccCCCC------CC------eEEECCeecCCcCH---
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVI---------SLIERFYDPQ------AG------EVLIDGINLKEFQL--- 455 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~---------~~l~g~~~~~------~G------~i~i~g~~~~~~~~--- 455 (1198)
..|+|+||+|++|++++|+|+||||||||+ +.+.+...+. +| .+.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3333333222 22 35555555432210
Q ss_pred -------HHHh-------------------------------cceEEEcCCCCCC-------------------------
Q 000984 456 -------QWIR-------------------------------KKIGLVSQEPVLF------------------------- 472 (1198)
Q Consensus 456 -------~~~r-------------------------------~~i~~v~Q~~~l~------------------------- 472 (1198)
+.+| +..|+++|+..++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 2356777776544
Q ss_pred --------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHHhhccCC--
Q 000984 473 --------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKDP-- 541 (1198)
Q Consensus 473 --------~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lARal~~~~-- 541 (1198)
..|+++++.|........+..+ .+..+ |+.. .+++.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~---------~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQ---------VLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHH---------HHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHH---------HHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 2467777776433211122222 23333 4443 468889999999999999999999876
Q ss_pred -CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhhHhcCCC
Q 000984 542 -RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 542 -~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 612 (1198)
++|||||||++||+.+.+.+.+.|+++. +++|+|+|+|+++.+..||+|++| ++|+|++.|+|+++++++.
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCc
Confidence 7999999999999999999999998875 489999999999999999999999 8999999999999998743
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.9e-28 Score=306.42 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=89.2
Q ss_pred HHhCCCCccch-hcCCCCCCChHHHHHHhHHHhhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecC
Q 000984 505 IDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHR 580 (1198)
Q Consensus 505 i~~l~~g~~t~-v~~~g~~lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~ 580 (1198)
+..+ |++.. .+....+|||||||||+|||||.++| ++|||||||++||++..+.+.+.++.+.. +.|+|+|+|+
T Consensus 363 L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 363 LLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4444 66644 67777899999999999999999999 49999999999999999999998887753 7899999999
Q ss_pred cchhhccCEEEEE------eCCEEEEecChhhHh
Q 000984 581 LSTVRNADMIAVI------HRGKIVEKGTHSKLV 608 (1198)
Q Consensus 581 ~~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 608 (1198)
++.+..||+|++| ++|++++.|+++++.
T Consensus 441 l~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 441 LDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp HHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999889999999 689999999887664
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=2.6e-27 Score=296.12 Aligned_cols=211 Identities=25% Similarity=0.394 Sum_probs=156.7
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH-HhccC-------CC---------------
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL-IERFY-------DP--------------- 438 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~-l~g~~-------~~--------------- 438 (1198)
..++++|+++ ..|+|+||+|++||+++|+|+||||||||++. |.|.+ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999975 16999999999999999999999999999996 66543 22
Q ss_pred ---CCC-------eEEECCeecCCcCH----------HHHhcceEEEc---------CC---------------------
Q 000984 439 ---QAG-------EVLIDGINLKEFQL----------QWIRKKIGLVS---------QE--------------------- 468 (1198)
Q Consensus 439 ---~~G-------~i~i~g~~~~~~~~----------~~~r~~i~~v~---------Q~--------------------- 468 (1198)
.+| .|.+||.++...+. +.+|..++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 356 68899988754322 33443322222 11
Q ss_pred -CCCC-------------------------cccHHHHHh--------cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 000984 469 -PVLF-------------------------TGSIKDNIA--------YGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1198)
Q Consensus 469 -~~l~-------------------------~~ti~~Ni~--------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 514 (1198)
-.++ .-||.||+. |... . .... ...+.++.+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~--~-~~~~------~~~~~L~~~--gL~~ 721 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD--E-SAIF------RALDTLREV--GLGY 721 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT--S-HHHH------HHHHHHHHT--TCTT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc--c-hHHH------HHHHHHHHc--CCCc
Confidence 1111 124555543 3211 0 1111 123344555 5655
Q ss_pred -hhcCCCCCCChHHHHHHhHHHhhccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCE
Q 000984 515 -LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADM 589 (1198)
Q Consensus 515 -~v~~~g~~lSgGqkqri~lARal~~~---~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~ 589 (1198)
.++....+||||||||++|||+|.++ |++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 46788889999999999999999996 69999999999999999999999998874 57999999999999988999
Q ss_pred EEEE------eCCEEEEecChhhHhcCC
Q 000984 590 IAVI------HRGKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 590 i~~l------~~G~i~~~g~~~~l~~~~ 611 (1198)
|++| ++|+|++.|+++++.+..
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9999 699999999999998763
No 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=3.7e-27 Score=293.76 Aligned_cols=212 Identities=25% Similarity=0.385 Sum_probs=158.7
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccC-------CCCCC------------
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY-------DPQAG------------ 441 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~-------~~~~G------------ 441 (1198)
..++++|++. ..|+|+||+|++||+++|+|+||||||||++.|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 699 (972)
T 2r6f_A 628 RWLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699 (972)
T ss_dssp CEEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCS
T ss_pred eEEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccc
Confidence 3588888741 2699999999999999999999999999999864 221 11233
Q ss_pred -eEEECCeecCCcC---HH-------HHh---------cceEEEcCCCCC---------------------C--------
Q 000984 442 -EVLIDGINLKEFQ---LQ-------WIR---------KKIGLVSQEPVL---------------------F-------- 472 (1198)
Q Consensus 442 -~i~i~g~~~~~~~---~~-------~~r---------~~i~~v~Q~~~l---------------------~-------- 472 (1198)
.|.+||.++.... +. .+| +.++|++|...+ |
T Consensus 700 ~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~c 779 (972)
T 2r6f_A 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPC 779 (972)
T ss_dssp EEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEEC
T ss_pred eEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccc
Confidence 3788888874321 11 111 346888885321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCCh
Q 000984 473 --------------------------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSG 525 (1198)
Q Consensus 473 --------------------------~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSg 525 (1198)
..|+.+|+.|... . ....++ .+.++.+ |+.. ..+....+|||
T Consensus 780 e~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~~~------~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 780 EVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIKRK------LETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHHHH------HHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred cccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHHHH------HHHHHHc--CCCcccccCchhhCCH
Confidence 1256666665322 1 111111 2334444 6665 57888889999
Q ss_pred HHHHHHhHHHhhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eC
Q 000984 526 GQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HR 595 (1198)
Q Consensus 526 Gqkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~ 595 (1198)
|||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCC
Confidence 9999999999999875 9999999999999999999999998865 579999999999998889999999 68
Q ss_pred CEEEEecChhhHhcCCC
Q 000984 596 GKIVEKGTHSKLVEDPE 612 (1198)
Q Consensus 596 G~i~~~g~~~~l~~~~~ 612 (1198)
|+|++.|+++++.+...
T Consensus 929 G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CSEEEEESHHHHHTCTT
T ss_pred CEEEEecCHHHHHhCch
Confidence 99999999999987633
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=1.2e-26 Score=276.18 Aligned_cols=200 Identities=19% Similarity=0.280 Sum_probs=151.2
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--------------------------------------CCCCe
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--------------------------------------PQAGE 442 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--------------------------------------~~~G~ 442 (1198)
.+++++|++++| +++|+||||||||||+++|.++.. +..|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 789999999999 999999999999999999976654 44788
Q ss_pred EEECCeecCCcCHHHHhcc-eEEEcCCCCCCcccHHHHHhcCCCCCCH--H-------HHHHHHHH--------------
Q 000984 443 VLIDGINLKEFQLQWIRKK-IGLVSQEPVLFTGSIKDNIAYGKDDATT--E-------EIRVATEL-------------- 498 (1198)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~--~-------~~~~~~~~-------------- 498 (1198)
+.+||.+++..++.++.+. +++++|++.++..+..++..|-...... . ++.++.+.
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777777766 8999999988766655444332111100 0 00000000
Q ss_pred ----------------------------------hcHHHHHHhC--CC----------------Cccc---hhcCCCCC-
Q 000984 499 ----------------------------------ANAAKFIDKL--PQ----------------GIDT---LVGEHGTQ- 522 (1198)
Q Consensus 499 ----------------------------------~~~~~~i~~l--~~----------------g~~t---~v~~~g~~- 522 (1198)
..+.+.+..+ |+ |.+. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 0011122222 11 2221 23444433
Q ss_pred -------CChHHHHHHhHHHhhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE
Q 000984 523 -------LSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 523 -------lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999987789999999999998889999999
Q ss_pred ----eCCEEEEe
Q 000984 594 ----HRGKIVEK 601 (1198)
Q Consensus 594 ----~~G~i~~~ 601 (1198)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998754
No 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.94 E-value=1.6e-26 Score=289.37 Aligned_cols=211 Identities=23% Similarity=0.370 Sum_probs=155.8
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-c----cCC---CCCCe-----------
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-R----FYD---PQAGE----------- 442 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g----~~~---~~~G~----------- 442 (1198)
..++++|++. .+|+|+||+|++|++++|+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999851 2699999999999999999999999999999864 2 222 23343
Q ss_pred --EEECCeecCCc---CHH-------HHh---------cceEEEcCCCCC---------------------C--------
Q 000984 443 --VLIDGINLKEF---QLQ-------WIR---------KKIGLVSQEPVL---------------------F-------- 472 (1198)
Q Consensus 443 --i~i~g~~~~~~---~~~-------~~r---------~~i~~v~Q~~~l---------------------~-------- 472 (1198)
|.+|+.++... ++. .+| +..+|++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 45566555321 111 112 345777775321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCCh
Q 000984 473 --------------------------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSG 525 (1198)
Q Consensus 473 --------------------------~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSg 525 (1198)
..|+.+|+.|... . ....++ .+.++.+ |+.. ..+....+|||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~--~~~~~~------~~~L~~l--gL~~~~l~~~~~~LSG 866 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-I--AGVHRY------LRTLVDV--GLGYVRLGQPAPTLSG 866 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-C--HHHHHH------HHHHHHT--TGGGSBTTCCGGGSCH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-c--hHHHHH------HHHHHHc--CCCcccccCccccCCH
Confidence 1245566654321 1 111111 2334444 6666 67888899999
Q ss_pred HHHHHHhHHHhhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eC
Q 000984 526 GQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HR 595 (1198)
Q Consensus 526 Gqkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~ 595 (1198)
|||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCC
Confidence 9999999999999875 9999999999999999999999998864 579999999999999889999999 68
Q ss_pred CEEEEecChhhHhcCC
Q 000984 596 GKIVEKGTHSKLVEDP 611 (1198)
Q Consensus 596 G~i~~~g~~~~l~~~~ 611 (1198)
|+|++.|+++++.+..
T Consensus 947 G~Iv~~G~~~el~~~~ 962 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAVP 962 (993)
T ss_dssp SEEEEEECHHHHHHCT
T ss_pred CEEEEecCHHHHHhCC
Confidence 9999999999998763
No 74
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4e-30 Score=304.50 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=144.1
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-e-EEECCeecCCcCHHHHhcceEEEcCCCCCC----cccH
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-E-VLIDGINLKEFQLQWIRKKIGLVSQEPVLF----TGSI 476 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~----~~ti 476 (1198)
.++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.++|+||++.+| ..|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccch
Confidence 378999999999999999999999999999999999999 9 99998 1 367899999998544 2589
Q ss_pred HHHHhcCCCCC----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh--hccCCCE----EEE
Q 000984 477 KDNIAYGKDDA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA--ILKDPRI----LLL 546 (1198)
Q Consensus 477 ~~Ni~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa--l~~~~~i----lll 546 (1198)
+||+ |+.... ..+++.. .+..+ |++.... ..+||||||||++|||| |+.+|++ |||
T Consensus 200 ~eni-~~~~~~~~~~~~~~~~~---------ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLLHNKQP---------MVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TCTT-CSCBCBSSCCSSCCBCC---------EECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhhh-cccccccCcchHHHHHH---------HHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 9999 754310 1111111 11222 4544433 67899999999999999 9999999 999
Q ss_pred eC-CCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcc------hhh-ccCE-----EEEEe-CCEEEEecChhhHhc
Q 000984 547 DE-ATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS------TVR-NADM-----IAVIH-RGKIVEKGTHSKLVE 609 (1198)
Q Consensus 547 De-~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~------~~~-~~d~-----i~~l~-~G~i~~~g~~~~l~~ 609 (1198)
|| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+. .||+ |++|+ +|+++ .|+++++.+
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 99 99999999 66666666653 689999999987 443 4899 99999 99999 999988743
No 75
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=2.6e-26 Score=251.03 Aligned_cols=134 Identities=34% Similarity=0.650 Sum_probs=123.3
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
.+|+++||+|+|+++ +.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999421 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|||+|.+|++|++|||.++. ...++++++++++.+++.+++..+|+|+++.+
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 139 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC
T ss_pred EEEEeCCCccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhh
Confidence 99999999999999999999974 35678889999999999999999999998753
No 76
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=7.4e-26 Score=247.35 Aligned_cols=132 Identities=36% Similarity=0.675 Sum_probs=121.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+|+|++ +.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+|||+|.+|.+|++|||.++.....++++++++++.+++++++..+|+|+++.+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 133 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEE
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchh
Confidence 999999999999999999972235678889999999999999999999998864
No 77
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.92 E-value=1.9e-25 Score=246.05 Aligned_cols=134 Identities=40% Similarity=0.664 Sum_probs=122.3
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+++||+|+|++.+..++|+||||+|++||.+||+||||||||||+++|.|+++| +|+|.+||.|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743224699999999999999999999999999999999999987 8999999999999998999999
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
|++|||+|.+|++|++|||.++.. ..+++++.++++.+++.+++..+|+|+||.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~ 149 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIV 149 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEE
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccc
Confidence 999999999999999999999743 4578889999999999999999999998854
No 78
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.92 E-value=3.3e-25 Score=245.54 Aligned_cols=135 Identities=41% Similarity=0.705 Sum_probs=121.4
Q ss_pred cccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+.|+++||+|+|+++++.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 45699999999996421246999999999999999999999999999999999999999999999999999988889999
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCH-HHHHHHHHHcchHHHHHhccccccce
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATE-AEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~td-eei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
+|++|||+|.+|++|++|||.++.. ..++ +++.++++.++++++++.+|+|+++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 149 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTE 149 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB
T ss_pred cEEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhh
Confidence 9999999999999999999999743 3444 77888999999999999999998764
No 79
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=3.8e-25 Score=278.90 Aligned_cols=166 Identities=27% Similarity=0.408 Sum_probs=118.5
Q ss_pred HHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHH
Q 000984 428 VISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFID 506 (1198)
Q Consensus 428 l~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~ 506 (1198)
+..+.-+.+.|..|+|.++|.++.++....+...++++.+- .+...+ .......+..+ ...+.+.
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~------------~l~~~~~~~~~~~~~~~~--~~~~~L~ 449 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNL------------NLTEREREIVGELLKEIE--KRLEFLV 449 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSC------------CCCTTTTTTHHHHHHHHH--HHHHHHH
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhc------------cCcHHHHHHHHhhHHHHH--HHHHHHH
Confidence 34445566788999999999987554333333333332211 011000 01111111111 1123444
Q ss_pred hCCCCccch-hcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcc
Q 000984 507 KLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS 582 (1198)
Q Consensus 507 ~l~~g~~t~-v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~ 582 (1198)
.+ |++.. .+....+||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++. +++|+|+|+|+++
T Consensus 450 ~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~ 527 (916)
T 3pih_A 450 DV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE 527 (916)
T ss_dssp TT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH
T ss_pred Hc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44 66543 567778899999999999999999887 999999999999999999999998875 3789999999999
Q ss_pred hhhccCEEEEE------eCCEEEEecChhhHhc
Q 000984 583 TVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 583 ~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1198)
.+..||+|++| ++|++++.|+++++++
T Consensus 528 ~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 528 VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99899999999 8999999999988764
No 80
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=2e-24 Score=246.90 Aligned_cols=194 Identities=20% Similarity=0.265 Sum_probs=140.2
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----------------------------------------------
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFY---------------------------------------------- 436 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~---------------------------------------------- 436 (1198)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998432
Q ss_pred ----CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCH----------------HHHHHH
Q 000984 437 ----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATT----------------EEIRVA 495 (1198)
Q Consensus 437 ----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~----------------~~~~~~ 495 (1198)
.+.+|.+.+||.+++..+...+...+++.||+..++ .|++.+|+.. .|.... +++.+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~-~p~~rr~~ld~~~~~~~~~~~y~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNA-SPEELRLESSKHPTSLVPRGSYQRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhc-cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 233578899999886556667777899999988766 8999999874 232110 111111
Q ss_pred HHHh------------cH-HHHHHhCCCCccchhc------CCCCCCChHHHHHHhHHHhhc----cCCCEEEEeCCCCC
Q 000984 496 TELA------------NA-AKFIDKLPQGIDTLVG------EHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSA 552 (1198)
Q Consensus 496 ~~~~------------~~-~~~i~~l~~g~~t~v~------~~g~~lSgGqkqri~lARal~----~~~~illlDe~ts~ 552 (1198)
.... .+ .+....++.|+++.++ .....||||||||++||||+. ++|++|||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1100 00 0011234446555432 234689999999999999996 78999999999999
Q ss_pred CCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEE--EEEeCCEE
Q 000984 553 LDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI--AVIHRGKI 598 (1198)
Q Consensus 553 lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i--~~l~~G~i 598 (1198)
||+...+.+.+.++++.+++|+|++||+.+.+..||++ ++|++|+.
T Consensus 254 LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 254 LDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 99999999999998886778999999998878889987 88888854
No 81
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=4.6e-24 Score=266.10 Aligned_cols=149 Identities=26% Similarity=0.403 Sum_probs=111.9
Q ss_pred CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHH-------HHHHHHHhcHHHHHHhC
Q 000984 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEE-------IRVATELANAAKFIDKL 508 (1198)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-~~~~~-------~~~~~~~~~~~~~i~~l 508 (1198)
.|....|.++|.+|. .+...||.|++.|...- .+.++ +.+..+.. +.+..+
T Consensus 433 ~~~~l~v~~~g~~i~------------------q~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~v 491 (972)
T 2r6f_A 433 KKESLAVLVGGKHIG------------------EVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNV 491 (972)
T ss_dssp CTTTTTEESSSCBHH------------------HHHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHHH
T ss_pred CHHHheeEECCCcHH------------------HHhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhhC
Confidence 455667888886643 23456888888873211 12211 11222222 223333
Q ss_pred CCCccch-hcCCCCCCChHHHHHHhHHHhhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchh
Q 000984 509 PQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV 584 (1198)
Q Consensus 509 ~~g~~t~-v~~~g~~lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~ 584 (1198)
|++.. .+....+|||||||||+||+||..+| ++|||||||++||++..+.+.+.|+++. .+.|||+|+|+++.+
T Consensus 492 --GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i 569 (972)
T 2r6f_A 492 --GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 569 (972)
T ss_dssp --TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH
T ss_pred --CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 66653 57777899999999999999999985 9999999999999999999999998875 478999999999999
Q ss_pred hccCEEEEE------eCCEEEEecChhhHh
Q 000984 585 RNADMIAVI------HRGKIVEKGTHSKLV 608 (1198)
Q Consensus 585 ~~~d~i~~l------~~G~i~~~g~~~~l~ 608 (1198)
..||+|++| ++|++++.|+++++.
T Consensus 570 ~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 570 LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999 789999999887654
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=249.06 Aligned_cols=134 Identities=25% Similarity=0.459 Sum_probs=123.6
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
..+.|+++||+++|+.+ +.++|+||||+|++||.+||+||||||||||+++|.|+++ ++|+|.|||+|+.+++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 45789999999999633 3469999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
++|++|||++.||++|++|||.+.. ...+++++++++.+++.+++.++|.+++|.+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i 149 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVL 149 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEE
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhccccccccc
Confidence 9999999999999999999998642 4678999999999999999999999988854
No 83
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=6.8e-26 Score=240.53 Aligned_cols=157 Identities=19% Similarity=0.211 Sum_probs=100.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
..+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++. .+....|++++|+||+| +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec-CCchhhhcceEEecCCH-------HH
Confidence 4588985 89999999999999999999999999 99999994 33332 12234577899999998 66
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHh
Q 000984 479 NI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1198)
Q Consensus 479 Ni-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~ 557 (1198)
|+ .++.+. .+.+........+.+.+ .. | | |||||++|||||+.+|++|||||||++ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l-----------~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLM-----------EA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHH-----------HT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHH-----------Hh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 76 332100 00000000001111222 11 1 1 999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCC
Q 000984 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1198)
Q Consensus 558 ~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1198)
.+.+.+.|+++.+++|+| +||+++.+.. +...++|
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 778888888764468888 9999886543 3334455
No 84
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=2.1e-22 Score=252.23 Aligned_cols=134 Identities=28% Similarity=0.426 Sum_probs=104.4
Q ss_pred CCCcccHHHHHhcCCCCC--CHHH------H-HHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHhHHHhhcc
Q 000984 470 VLFTGSIKDNIAYGKDDA--TTEE------I-RVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 470 ~l~~~ti~~Ni~~~~~~~--~~~~------~-~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
.++..||.|++.|. .+. +.++ + .+..+.. +++..+ |++.. .+....+|||||||||+||+||..
T Consensus 465 q~~~ltV~e~l~f~-enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 465 EVCELSIADCADFL-NALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp CSSHHHHHHHHHTT-TTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTT
T ss_pred HHhhCCHHHHHHHH-HhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhh
Confidence 46778999999984 332 2211 0 1111121 223333 67654 577778999999999999999999
Q ss_pred C--CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhhHhc
Q 000984 540 D--PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 540 ~--~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1198)
+ |++|||||||++||+...+.+.+.|+++. .+.|+|+|+|+++.+..||+|++| ++|++++.|+++++.+
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 8 58999999999999999999988888775 479999999999999999999999 6889999888877653
No 85
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=8.1e-24 Score=218.73 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=107.9
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCC--CCcccHHHHHh
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA 481 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~Ni~ 481 (1198)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 223333 67788763 33344443332
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhH---
Q 000984 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE--- 558 (1198)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~--- 558 (1198)
. .. ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ~---------------~~-----~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------------IV-----SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------------HH-----HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------------HH-----HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 011123565555543 34699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHh-CCCeEEEEecCcchhhccCEE
Q 000984 559 -------------KVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 559 -------------~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1198)
+.+.+.++++. ++.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 66777765543 489999999999998877664
No 86
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=4.6e-22 Score=230.44 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=75.5
Q ss_pred CCCCCCChHHHHHHhHHHhhc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEE
Q 000984 518 EHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1198)
....+||||||||++|||||. .+|++|||||||++||+.+...+.+.++++. +++|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455679999999999999999 7999999999999999999999999998874 478999999999998889999
Q ss_pred EEEeCCEEEE
Q 000984 591 AVIHRGKIVE 600 (1198)
Q Consensus 591 ~~l~~G~i~~ 600 (1198)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 87
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.87 E-value=4e-22 Score=215.58 Aligned_cols=119 Identities=22% Similarity=0.406 Sum_probs=106.1
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+++||+|+|+.+ +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 34699999999999999999999999999999999999999999999999 4
Q ss_pred cceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
|++|||+|.+|++|++|||.++. ...+....++++..++.+++..+|.+++|.
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 123 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSC
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCccccccc
Confidence 99999999999999999999974 234556777888889999999999888764
No 88
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.87 E-value=1e-22 Score=220.93 Aligned_cols=140 Identities=24% Similarity=0.357 Sum_probs=114.6
Q ss_pred EEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH----
Q 000984 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---- 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L---- 1117 (1198)
|+++||+|+|+.++ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2369999999999999999999999999999999999999999999999999999988765
Q ss_pred Hhhcceeccccccccc-cHHHHHhcCC----CCCCC----HHHHHHHHHHcchHHH-----HHhccccccceeeeeecc
Q 000984 1118 RQQMGLVSQEPVLFND-TIRANIAYGK----GGDAT----EAEIQAASEMANAHKF-----ICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~----~~~~t----deei~~Al~~A~l~df-----I~~LP~g~dt~v~~~~~~ 1182 (1198)
|++|++|||+|.+|.+ |++||+.++. ....+ .+++.++++..++.+. +.+|..|-.-+|+++.+-
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 4579999999999987 9999998631 01122 3457778888887553 566777777777766553
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=6.1e-25 Score=236.49 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=118.9
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-HHHhcceEEEcCCCCCCc-----
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFT----- 473 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~v~Q~~~l~~----- 473 (1198)
.-|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |+++..... ...+..++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 877654322 234678999999986553
Q ss_pred ------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhH-----HHhhccCCC
Q 000984 474 ------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI-----ARAILKDPR 542 (1198)
Q Consensus 474 ------~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~l-----ARal~~~~~ 542 (1198)
+++++| .+|.+ .+++.++++. +....++ .+||||||||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 333344 22322 3333333322 2222232 5799999999999 999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+++|||||+++|.+++..+++.+....+++| ++| +..+|.|+++++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988776767 677 577999988764
No 90
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=3.4e-23 Score=214.58 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~ 493 (1198)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999984 667777654443224567899999987 2223331 1100
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh-----hccCCCEEEEeC--CCCCCCHHhHHHHHHHHH
Q 000984 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA-----ILKDPRILLLDE--ATSALDAESEKVVQEALD 566 (1198)
Q Consensus 494 ~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa-----l~~~~~illlDe--~ts~lD~~~~~~i~~~i~ 566 (1198)
.+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0134667778899999999999996 999999999999 999999999988888886
Q ss_pred HHhCCCeEEEEec---Ccchhhc-cCEEEEEeCCEEEE
Q 000984 567 RIMVNRTTVIVAH---RLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 567 ~~~~~~t~i~itH---~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
+ .+.|+|+++| +.+.+.. +|+ .+|++.+
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4667999996 5566654 676 5677776
No 91
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.86 E-value=6.3e-22 Score=214.99 Aligned_cols=117 Identities=25% Similarity=0.407 Sum_probs=103.4
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+|+|+.+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +|+
T Consensus 4 l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 4 ITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp EEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred EEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 8999999999632 34699999999999999999999999999999999999999999999999 499
Q ss_pred eeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
+|||+|.+|+.|++|||.++. ...+++..++++.+++.+.+..+|.|++|.
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 120 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACALLPDLEILPSGDRTE 120 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTS--CCCTTHHHHHHHHTTCHHHHTTSTTGGGSE
T ss_pred EEcCCCcCCCcCHHHHhhCcc--ccCHHHHHHHHHHHhhHHHHHhcccccccc
Confidence 999999999999999999974 234456677888888888888888887754
No 92
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=3.2e-22 Score=221.16 Aligned_cols=138 Identities=21% Similarity=0.448 Sum_probs=112.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1198)
-|+++||+++|++. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999642 35999999999999999999999999999999999999999999999999994 445667899
Q ss_pred hcceecccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp--~LF~gTIreNI~~g~~-~~~td----eei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||+| .+|..|++|||.++.. ...+. +.+.++++..++.++.. +|..|-.-+|+++.+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 5889999999987621 11233 45778888888876654 455566666665544
No 93
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.85 E-value=1.2e-21 Score=216.24 Aligned_cols=137 Identities=23% Similarity=0.382 Sum_probs=116.9
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccccc-ccccHHHHHhcCCCC---CCCHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1122 GLVSQEPVL-FNDTIRANIAYGKGG---DATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~L-F~gTIreNI~~g~~~---~~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
++|+|++.+ |..|++|||.++... ...++++.++++..++.++. .+|..|-.-+|+++.+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 999999976 788999999986321 22356788899998876654 4455666666666544
No 94
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=8e-22 Score=214.76 Aligned_cols=137 Identities=18% Similarity=0.352 Sum_probs=108.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH-hh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR-QQ 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR-~~ 1120 (1198)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...++ ++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 3699999999999999999999999999999999999999999999999999988877664 45
Q ss_pred cceeccccccccc-cHHHHHhcCCCCCCC----HHHHHHHHHHc-chHHHH----Hhccccccceeeeeec
Q 000984 1121 MGLVSQEPVLFND-TIRANIAYGKGGDAT----EAEIQAASEMA-NAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~~~~t----deei~~Al~~A-~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
|++|||+|.+|.+ |++||+.++.....+ ++.+.++++.. ++.++. .+|..|-.-+++++.+
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 9999999999987 999999986311112 23345555555 355443 3455555555555443
No 95
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.85 E-value=6.5e-22 Score=224.80 Aligned_cols=142 Identities=22% Similarity=0.352 Sum_probs=115.5
Q ss_pred ccEEEeeeeEECCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH--
Q 000984 1041 GEIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-- 1117 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~-~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~L-- 1117 (1198)
.-|+++||+++|+.+. +.++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|.+||.|+..++...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996432 2469999999999999999999999999999999999999999999999999999987654
Q ss_pred -Hhhcceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeecc
Q 000984 1118 -RQQMGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1118 -R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~~ 1182 (1198)
|++|++|||++.||.. |++|||.++.. ...+ ++.+.++++..++.++..+ |..|-.-+|+++.+-
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 7899999999999865 99999987521 1122 3457788999998776554 445666666655543
No 96
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=1.5e-23 Score=239.02 Aligned_cols=131 Identities=19% Similarity=0.237 Sum_probs=110.3
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHH
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni 480 (1198)
+++++|+.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++.....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe--------------
Confidence 7899999999999999999999999999999999999999999999865 233223445565553
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHH
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1198)
| |||+||++|||||.++|+++||||||+. .
T Consensus 224 ------------------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 224 ------------------------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp ------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred ------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 0 8999999999999999999999999982 2
Q ss_pred HHHHHHHHhCCC-eEEEEecCcchhhccCEEEEEeCCE
Q 000984 561 VQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 561 i~~~i~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
+.+.++.+..++ |+|+++|+.+....+||+++|++|+
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 445666655554 7999999999878899999998875
No 97
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.84 E-value=1.1e-21 Score=215.62 Aligned_cols=137 Identities=28% Similarity=0.436 Sum_probs=113.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1198)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 36999999999999999999999999999999999999999999999999985 345667899
Q ss_pred hcceeccccccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFND-TIRANIAYGK--GGDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~--~~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||++.+|.. |++|||.++. ....+ ++++.++++..++.++.. +|..|-.-+++++.+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999987 9999998752 11122 345788899999877644 566666666665543
No 98
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=1.3e-21 Score=214.40 Aligned_cols=137 Identities=17% Similarity=0.358 Sum_probs=114.1
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+++||+++|++ .++|+||||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 56999999999953 469999999999999999999999999999999999999999999999999977 56678999
Q ss_pred cceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
|++|||+|.+|.+ |++||+.++.. ...+ ++++.++++..++.++.. +|..|..-+++++.+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 9999999999887 99999987410 0122 246788899999877644 566676666666544
No 99
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.84 E-value=2.3e-21 Score=214.38 Aligned_cols=135 Identities=21% Similarity=0.400 Sum_probs=111.3
Q ss_pred EEEeeeeEECCCCCC--ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~--~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
|+++||+++|+.+.. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4699999999999999999999999999999999999999999999999998753 78899
Q ss_pred cceecccc--ccccccHHHHHhcCCC----CCCCHHHHHHHHHHcchH--HHHHh----ccccccceeeeee
Q 000984 1121 MGLVSQEP--VLFNDTIRANIAYGKG----GDATEAEIQAASEMANAH--KFICS----LQQVRTSRLLLVM 1180 (1198)
Q Consensus 1121 IsiV~Qdp--~LF~gTIreNI~~g~~----~~~tdeei~~Al~~A~l~--dfI~~----LP~g~dt~v~~~~ 1180 (1198)
|++|||+| .+|..|++|||.++.. ....++++.++++..++. ++..+ |..|-.-+++++.
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 151 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence 99999997 5788999999998631 122356789999999998 87655 4455555555543
No 100
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.84 E-value=1.3e-21 Score=210.83 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=113.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~---LR 1118 (1198)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -hhcceecccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcchHHH----HHhccccccceeeeeecc
Q 000984 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKF----ICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~----tdeei~~Al~~A~l~df----I~~LP~g~dt~v~~~~~~ 1182 (1198)
++|++|||+|.+|. -|++||+.++.. ... .++++.++++..++.++ +.+|..|..-+++++.+-
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 78999999999886 499999987421 011 23567888998888665 445666777777665543
No 101
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.84 E-value=3.7e-21 Score=209.82 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=115.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++ ++|+|+||+|++||.+||+||+|||||||+++|.|+++|+ |+|.+||.++.+++...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 3899999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeccccccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHH----hccccccceeeeeeccc
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMIPW 1183 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~~~ 1183 (1198)
+|||++.+|.+ |++|||.++.....+++++.++++..++.++.. +|..|-.-+++++.+--
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 142 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999998875 999999987422224788999999999877654 56667666666655433
No 102
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.84 E-value=1.7e-21 Score=207.35 Aligned_cols=132 Identities=21% Similarity=0.377 Sum_probs=112.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|+ + ++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 5999999999999999999999999999999999999999999999999986 368899
Q ss_pred ceeccccccccc-cHHHHHhcCCC--C-CCCHHHHHHHHHHcchHHH---HHhccccccceeeeeecc
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG--G-DATEAEIQAASEMANAHKF---ICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~--~-~~tdeei~~Al~~A~l~df---I~~LP~g~dt~v~~~~~~ 1182 (1198)
++|||+|.+|.+ |++|||.++.. . ...++++.++++..++.++ +.+|..|..-+++++.+-
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 99999987511 1 2236788999999988654 445777777777666543
No 103
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.84 E-value=2.2e-21 Score=215.33 Aligned_cols=137 Identities=18% Similarity=0.284 Sum_probs=112.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1198)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999963 36999999999999999999999999999999999999999999999999998 788888999
Q ss_pred hcceecccccc-ccc--cHHHHHhcCCCC------CCC---HHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1120 QMGLVSQEPVL-FND--TIRANIAYGKGG------DAT---EAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~L-F~g--TIreNI~~g~~~------~~t---deei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||++.+ |.. |++|||.++... ... ++++.++++..++.++. .+|..|-.-+|+++.+
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999975 555 999999986311 112 24577888988887654 4566666666666544
No 104
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.83 E-value=7.2e-21 Score=209.47 Aligned_cols=137 Identities=14% Similarity=0.230 Sum_probs=112.3
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-HHHHhh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQ 1120 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l-~~LR~~ 1120 (1198)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 369999999999999999999999999999999999999999999999999988765 346789
Q ss_pred cceecccccccc-ccHHHHHhcCCCC---C-----------CC----HHHHHHHHHHcchHHHH----Hhccccccceee
Q 000984 1121 MGLVSQEPVLFN-DTIRANIAYGKGG---D-----------AT----EAEIQAASEMANAHKFI----CSLQQVRTSRLL 1177 (1198)
Q Consensus 1121 IsiV~Qdp~LF~-gTIreNI~~g~~~---~-----------~t----deei~~Al~~A~l~dfI----~~LP~g~dt~v~ 1177 (1198)
|++|||++.+|. .|++|||.++... . .+ .+++.++++..++.++. .+|..|-.-+|+
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 999999999886 5999999986321 1 11 24577888888886654 456666666666
Q ss_pred eeec
Q 000984 1178 LVMI 1181 (1198)
Q Consensus 1178 ~~~~ 1181 (1198)
++.+
T Consensus 164 iAra 167 (257)
T 1g6h_A 164 IGRA 167 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 105
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.83 E-value=5.1e-21 Score=210.97 Aligned_cols=136 Identities=21% Similarity=0.310 Sum_probs=112.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----------C
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----------L 1112 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~----------i 1112 (1198)
|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.. +
T Consensus 7 l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 7 LHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 899999999953 369999999999999999999999999999999999999999999999999962 4
Q ss_pred Ch---HHHHhhcceeccccccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcchHHH-HH----hccccccceee
Q 000984 1113 QL---KWLRQQMGLVSQEPVLFND-TIRANIAYGK--GGDAT----EAEIQAASEMANAHKF-IC----SLQQVRTSRLL 1177 (1198)
Q Consensus 1113 ~l---~~LR~~IsiV~Qdp~LF~g-TIreNI~~g~--~~~~t----deei~~Al~~A~l~df-I~----~LP~g~dt~v~ 1177 (1198)
+. ..+|++|++|||++.+|.. |++|||.++. ....+ ++++.++++..++.++ .. +|..|-.-+|+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 43 4568899999999999977 9999998742 11122 3467889999999887 44 56666666666
Q ss_pred eeec
Q 000984 1178 LVMI 1181 (1198)
Q Consensus 1178 ~~~~ 1181 (1198)
++.+
T Consensus 164 lAra 167 (262)
T 1b0u_A 164 IARA 167 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 106
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.83 E-value=3.2e-21 Score=219.17 Aligned_cols=137 Identities=30% Similarity=0.509 Sum_probs=112.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC--CChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK--LQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~--i~l~~LR~ 1119 (1198)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ......|+
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 3899999999963 469999999999999999999999999999999999999999999999999933 23345678
Q ss_pred hcceeccccccccc-cHHHHHhcCCCC-CC----CHHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFND-TIRANIAYGKGG-DA----TEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~~-~~----tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
+|++|||++.||.. |++|||.|+... .. .++++.++++..++.++.. .|..|-.-+|++..+
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999964 999999997421 11 2356888999999887655 455566666666544
No 107
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=4e-21 Score=219.87 Aligned_cols=135 Identities=21% Similarity=0.380 Sum_probs=111.7
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 389999999996 34699999999999999999999999999999999999999999999999999988776 4789
Q ss_pred ceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHhc----cccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSL----QQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~L----P~g~dt~v~~~~~ 1181 (1198)
++|+|++.||.. |++|||.|+.. ...+ ++.+.++++..++.++..+. ..|-.-+|++..+
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHH
Confidence 999999999965 99999998621 1123 34578889999988765544 4455555555443
No 108
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=8.2e-23 Score=237.32 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=127.5
Q ss_pred CccccceeEEEeCCC--------------------EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHH
Q 000984 399 EQIFSGFSISISSGT--------------------TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~--------------------~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1198)
+.+|++|||++++|+ .++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 458999999999999 99999999999999999999999999999999997653
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH--HHHHHhHHHh
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARA 536 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG--qkqri~lARa 536 (1198)
| .++++|++...+.|++||+.++.+.. ++.+.++..++.+ .+..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 1 27899998655789999987764322 2333344433211 12111 2 8999 9999999999
Q ss_pred hcc----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh------C----CCeEEEEecCcch--hhc-cCEE
Q 000984 537 ILK----------DPRILLLDEATSALDAESEKVVQEALDRIM------V----NRTTVIVAHRLST--VRN-ADMI 590 (1198)
Q Consensus 537 l~~----------~~~illlDe~ts~lD~~~~~~i~~~i~~~~------~----~~t~i~itH~~~~--~~~-~d~i 590 (1198)
+.+ +|++++|||||++||+.+.+.+.+.++++. . .+++++.||.++. +.. +|+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999888888777652 1 2456677898775 443 5554
No 109
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.82 E-value=1.4e-20 Score=214.88 Aligned_cols=134 Identities=24% Similarity=0.404 Sum_probs=112.1
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 4 IRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 899999999953 3699999999999999999999999999999999999999999999999999887754 67899
Q ss_pred eeccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+ |..|-.-+|++..+
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 999999987321 112 3468889999999877654 55565566665443
No 110
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.82 E-value=8e-21 Score=217.12 Aligned_cols=135 Identities=30% Similarity=0.505 Sum_probs=111.9
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 3699999999999999999999999999999999999999999999999999887764 5789
Q ss_pred ceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++.. +|..|-.-+|++..+
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHH
Confidence 999999999975 99999998621 0122 346788999999877655 455566666665543
No 111
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.82 E-value=1e-20 Score=215.27 Aligned_cols=137 Identities=26% Similarity=0.457 Sum_probs=112.8
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
..|+++||+++|++ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999941 2359999999999999999999999999999999999999999999999999987654 4789
Q ss_pred cceeccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
|++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+ |..|-.-+|+++.+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 9999999999975 99999998521 0112 3568889999999877654 55566666665543
No 112
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.82 E-value=1.7e-20 Score=215.12 Aligned_cols=135 Identities=21% Similarity=0.396 Sum_probs=107.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 4699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred ceeccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1122 GLVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++.. +|..|-.-+|++..+
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 999999999965 999999997421 123 245788999999987755 455666666666543
No 113
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.81 E-value=1.2e-20 Score=214.84 Aligned_cols=133 Identities=23% Similarity=0.437 Sum_probs=111.2
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|+ +. +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987554 578999
Q ss_pred eeccccccccc-cHHHHHhcCCC--CCCCHHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKG--GDATEAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~--~~~tdeei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
+|||++.||.. |++|||.|+.. ....++++.++++..++.++..+ |..|-.-+|++..+
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAra 141 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARA 141 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999976 99999998621 01123788999999998776554 55565566665543
No 114
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.81 E-value=2.5e-22 Score=236.58 Aligned_cols=194 Identities=16% Similarity=0.158 Sum_probs=155.9
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe---ecCCcC----
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQ---- 454 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~---~~~~~~---- 454 (1198)
..++++|+++.|+. +..+|+++ |++.+||+++|+||||||||||+++|.|+.+|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 35699999 999999999999999999999999999999999999999998 554432
Q ss_pred -HHHHhcceEEEcCC-C-CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHH
Q 000984 455 -LQWIRKKIGLVSQE-P-VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQR 530 (1198)
Q Consensus 455 -~~~~r~~i~~v~Q~-~-~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqr 530 (1198)
...+++.++|++|+ . ....-|+.+|+.+.. ++... .+.+. .+-+...+||+|| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~--------------~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD--------------RGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT--------------TTCEEEEEEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh--------------CCCCHHHHHHhHHHHHHHH-HH
Confidence 35678899999995 3 334679999988631 11110 01110 1113356799999 99
Q ss_pred HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-----CC-----eEEEEecCcchhhccCEEEEEeCCEEEE
Q 000984 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-----NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1198)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-----~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1198)
++|| +.+|++ |+++|+.+...+.+.++++.+ ++ |++++||+++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 889988 999999999999999988754 43 8999999999 67799999999999999
Q ss_pred ecChhhHhc
Q 000984 601 KGTHSKLVE 609 (1198)
Q Consensus 601 ~g~~~~l~~ 609 (1198)
.|++.++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 999988754
No 115
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=2.8e-22 Score=223.35 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=127.1
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccEEEeeeeEECCCC
Q 000984 976 KATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR 1055 (1198)
Q Consensus 976 ~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~ 1055 (1198)
..+.+...+|+.+... ..++..+..+...++++..+.+|+.++++.+++..... . ..++..+.|+|+||+|+|+
T Consensus 39 ~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 39 AGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp TTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH--
T ss_pred cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC--
Confidence 4455677777766555 57889999999999999999999999998654422111 1 1112235699999999995
Q ss_pred CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccH
Q 000984 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135 (1198)
Q Consensus 1056 ~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTI 1135 (1198)
.++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|+|.||++|+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASL 169 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGG
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccH
Confidence 36999999999999999999999999999999999999 7999 467899999999999
Q ss_pred HH-HHhcCCCCCCCHHHHHHHHHHcchHHHHHh-cccccc
Q 000984 1136 RA-NIAYGKGGDATEAEIQAASEMANAHKFICS-LQQVRT 1173 (1198)
Q Consensus 1136 re-NI~~g~~~~~tdeei~~Al~~A~l~dfI~~-LP~g~d 1173 (1198)
++ ||.|++ ++++ +++++|+. ||+|+|
T Consensus 170 ~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 170 ADTRAALVD--DATH----------ACWRYFDTYLRNALD 197 (305)
T ss_dssp TTCSCEEEE--EECH----------HHHHHHHHTTTGGGG
T ss_pred HHHhhccCc--cccH----------HHHHHHHHHhHccCC
Confidence 98 999973 4554 45778888 999987
No 116
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=3.3e-20 Score=206.72 Aligned_cols=115 Identities=22% Similarity=0.404 Sum_probs=91.9
Q ss_pred cccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+.|+++||+|+| .++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999965 2499999999999999999999999999999999999999999999998
Q ss_pred hcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
+|++|||+|.+|++|++|||. +. ...+..+.++++..++.+++..+|++++|.
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccch
Confidence 499999999999999999998 63 234556677888889999999999888764
No 117
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.81 E-value=1.4e-20 Score=204.26 Aligned_cols=131 Identities=22% Similarity=0.385 Sum_probs=108.5
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
|+++||+++|+ + +|+||||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 4578999
Q ss_pred eeccccccccc-cHHHHHhcCCCCC---CCHHHHHHHHHHcchHHHH----Hhccccccceeeeeec
Q 000984 1123 LVSQEPVLFND-TIRANIAYGKGGD---ATEAEIQAASEMANAHKFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~~---~tdeei~~Al~~A~l~dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+|||++.+|.. |++||+.++.... ..++++.++++..++.++. .+|..|..-+++++.+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999987 9999999873210 1245688899999887664 4566666666665544
No 118
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.81 E-value=1.3e-20 Score=215.53 Aligned_cols=136 Identities=20% Similarity=0.358 Sum_probs=112.1
Q ss_pred EEEeeeeEECCCCCCcc--ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHH
Q 000984 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~--vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~---l~~L 1117 (1198)
|+++||+++|+ +.+ +|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ +...
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 245 999999999999999999999999999999999999999999999999997622 3345
Q ss_pred Hhhcceeccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcchHHHHHh----ccccccceeeeeec
Q 000984 1118 RQQMGLVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICS----LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~~-~~t----deei~~Al~~A~l~dfI~~----LP~g~dt~v~~~~~ 1181 (1198)
|++|++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+ |..|-.-+|++..+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 7899999999999976 999999987321 122 3467889999999877554 55566666666543
No 119
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.80 E-value=1.5e-20 Score=206.14 Aligned_cols=136 Identities=24% Similarity=0.334 Sum_probs=106.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCCeEEECCcccCCCChHHH-Hh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-RQ 1119 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~--ydp~~G~I~IDG~dI~~i~l~~L-R~ 1119 (1198)
|+++||+|+|++ .++|+||||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+.... |+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 4699999999999999999999999999999999999 89999999999999998887766 45
Q ss_pred hcceeccccccccc-cHHHHHhcCCC---C-CCC----HHHHHHHHHHcch-HHHHH----h-ccccccceeeeeec
Q 000984 1120 QMGLVSQEPVLFND-TIRANIAYGKG---G-DAT----EAEIQAASEMANA-HKFIC----S-LQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~---~-~~t----deei~~Al~~A~l-~dfI~----~-LP~g~dt~v~~~~~ 1181 (1198)
.+++|||+|.+|.+ |++||+.++.. . ... ++++.++++..++ .++.. + |..|-.-+++++.+
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAra 157 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQL 157 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 69999999999986 99999986420 0 111 3457778888887 34443 3 66666666655443
No 120
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.80 E-value=2.4e-19 Score=205.12 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=74.9
Q ss_pred CCChHHHHHHhHHHhhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEE
Q 000984 522 QLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~---------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~ 592 (1198)
.||||||||++|||+|. .+|+|||||||||+||+...+.+.+.+.++. .|+|++|| .+. .+|++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998763 79999999 454 8999999
Q ss_pred EeCCEEEEecChhhH
Q 000984 593 IHRGKIVEKGTHSKL 607 (1198)
Q Consensus 593 l~~G~i~~~g~~~~l 607 (1198)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
No 121
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.80 E-value=3.1e-20 Score=213.58 Aligned_cols=135 Identities=21% Similarity=0.370 Sum_probs=110.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC------CChH
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK------LQLK 1115 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~------i~l~ 1115 (1198)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ++..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999953 469999999999999999999999999999999999999999999999999976 5543
Q ss_pred HHHhhcceecccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~~t----deei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
|++|++|||++.||. -|++|||.|+.. ...+ ++++.++++..++.++.. +|..|-.-+|++..+
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 153 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA 153 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHH
Confidence 678999999999995 599999998621 1122 345788999999877654 455566666665543
No 122
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.78 E-value=5e-20 Score=202.40 Aligned_cols=133 Identities=16% Similarity=0.289 Sum_probs=110.1
Q ss_pred EEEeeeeEECCCC-CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~-~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
|+++||+++|++. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.+||.|+.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999999765 33 8899
Q ss_pred c-eeccccccccccHHHHHhcCCC-CCCCHHHHHHHHHHcchH-HHH----Hhccccccceeeeeec
Q 000984 1122 G-LVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAH-KFI----CSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 s-iV~Qdp~LF~gTIreNI~~g~~-~~~tdeei~~Al~~A~l~-dfI----~~LP~g~dt~v~~~~~ 1181 (1198)
+ +|||+|.+ +.|++|||.++.. .+..++++.++++..++. ++. .+|..|-.-+++++.+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLA 142 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 9 99999999 9999999987521 134578899999999887 554 4566666666666544
No 123
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=7.7e-21 Score=210.34 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCC---H
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDAT---T 489 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~---~ 489 (1198)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. ...++.++|++|++.++. -||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 234578999999998875 599999998764322 1
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
+.+.+... .++.. ... ..||||||||+++|||+.. +|+||||+++||+...+ .++.+.
T Consensus 81 ~~i~~~~~----~~~~~-------~~~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~----~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEK-------FLK----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE----FMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHH-------HHH----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH----HHHHHH
T ss_pred HHHHHHHH----HHHHh-------hhH----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH----HHHHHH
Confidence 22322222 12211 112 2599999999999999875 99999999999997632 333333
Q ss_pred CCCeEEEEecCcchhh
Q 000984 570 VNRTTVIVAHRLSTVR 585 (1198)
Q Consensus 570 ~~~t~i~itH~~~~~~ 585 (1198)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987663
No 124
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.77 E-value=2.8e-21 Score=218.11 Aligned_cols=175 Identities=14% Similarity=0.212 Sum_probs=125.7
Q ss_pred CcccEEEEeEEEEcCCCCCCccccceeEE-----------------------EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 380 IRGDIELRDVYFSYPARPNEQIFSGFSIS-----------------------ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 380 ~~g~i~~~~v~~~y~~~~~~~~l~~i~l~-----------------------i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
..+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999993 577777765 8999999999999999999999999999
Q ss_pred CCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCC
Q 000984 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQG 511 (1198)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g 511 (1198)
+|..|. .++++|+|++.++..|+++|+.+.. +. .+.+.+. +.++.+..|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~---------~~L~~l~~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALM---------RFVTSVKSG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHH---------HHHHHHHTT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHH---------HHHHHhCCC
Confidence 998664 3799999999999889999997532 11 1122222 233333334
Q ss_pred cc-chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhh--ccC
Q 000984 512 ID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR--NAD 588 (1198)
Q Consensus 512 ~~-t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~--~~d 588 (1198)
.. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|+... .+.+.+ ..+|+|+|..+... ..+
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~~--D~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDLF--DFSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGGC--SEEEEEEECHHHHHHHHHH
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHhc--CcEEEEECCHHHHHHHHHH
Confidence 32 332 47999999999999999999999999999999986321 122222 24466666665432 245
Q ss_pred EEEEEeCC
Q 000984 589 MIAVIHRG 596 (1198)
Q Consensus 589 ~i~~l~~G 596 (1198)
|.+.+.+|
T Consensus 238 R~~~~rd~ 245 (312)
T 3aez_A 238 RFLAMRTT 245 (312)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 54444443
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.77 E-value=1.2e-22 Score=234.82 Aligned_cols=206 Identities=15% Similarity=0.041 Sum_probs=144.0
Q ss_pred HHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCCcccE-
Q 000984 966 YAGARLVED-GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEI- 1043 (1198)
Q Consensus 966 ~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~G~I- 1043 (1198)
+.|.++... +.++.+.+..+..++.....+ .+....+.++....+.+|+..++ +|................+.+
T Consensus 53 ~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~it 128 (361)
T 2gza_A 53 RASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRT 128 (361)
T ss_dssp ETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCC
T ss_pred ECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCC
Confidence 445555555 789999999988877765544 23333333333444556777766 222211100000001113445
Q ss_pred --------EEeeeeEE---CCCCCCcccc---------ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEE
Q 000984 1044 --------ELHHVSFK---YPSRPDVQVF---------RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103 (1198)
Q Consensus 1044 --------~f~nVsf~---Y~~~~~~~vL---------~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ 1103 (1198)
+|+||+|+ |++. +.++| +++||.|++|+.++||||||||||||+++|.|+++|++|.|.
T Consensus 129 l~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 129 LEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp HHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred HHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 99999999 9632 23466 999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChHHHHhhcceec-ccccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeeee
Q 000984 1104 LDGVEIQKLQLKWLRQQMGLVS-QEPVL---FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLV 1179 (1198)
Q Consensus 1104 IDG~dI~~i~l~~LR~~IsiV~-Qdp~L---F~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~~ 1179 (1198)
|+|. .++.+..+|+++++|+ |++.+ +..|+++||+++.. ..+|..+..+++.+.+++++..+|.|++|.+...
T Consensus 208 ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~ 284 (361)
T 2gza_A 208 IEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSITSC 284 (361)
T ss_dssp EESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEE
T ss_pred ECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 9985 5677777889999999 99987 89999999998743 4556556666777889999999999999876543
No 126
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=2.2e-20 Score=209.76 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=123.9
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHH--hcceEEEcCCCC-CC-cc
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TG 474 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~-~~ 474 (1198)
+++||++++|++++|+|||||||||+++.|+|++.|.+|+|.++|.|+.... +..+ |..++|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578889999999999999999999999999999999999999999886653 2233 457999999997 66 46
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~ 552 (1198)
|+++|+.++.....+ .. .++.. |...........|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d---------~~---lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD---------VV---LCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCS---------EE---EECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCc---------ch---HHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 999999864210000 00 01111 22111111122478 999999999999999 99999 9999
Q ss_pred CCHHhHHHHHHHHHHHhCCCeEEEEec---------Ccchhh-ccCEEEEEeCCEE
Q 000984 553 LDAESEKVVQEALDRIMVNRTTVIVAH---------RLSTVR-NADMIAVIHRGKI 598 (1198)
Q Consensus 553 lD~~~~~~i~~~i~~~~~~~t~i~itH---------~~~~~~-~~d~i~~l~~G~i 598 (1198)
+|+.... +.+.+ ..+.|+|++|| .++... ..+.|.++..|+.
T Consensus 233 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9997542 12222 23789999999 333333 3678999998864
No 127
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.77 E-value=1.2e-19 Score=200.50 Aligned_cols=137 Identities=16% Similarity=0.249 Sum_probs=108.8
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCCeEEECCcccCCCChHHH-H
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-R 1118 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~--ydp~~G~I~IDG~dI~~i~l~~L-R 1118 (1198)
-|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+++.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 499999999995 24699999999999999999999999999999999999 67899999999999998887766 4
Q ss_pred hhcceeccccccccc-cHHHHHhcCC--------CCCCCH----HHHHHHHHHcchH-HHH----H-hccccccceeeee
Q 000984 1119 QQMGLVSQEPVLFND-TIRANIAYGK--------GGDATE----AEIQAASEMANAH-KFI----C-SLQQVRTSRLLLV 1179 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~--------~~~~td----eei~~Al~~A~l~-dfI----~-~LP~g~dt~v~~~ 1179 (1198)
+.|++|||+|.+|.+ |+++|+.++. .+..+. +++.++++..++. ++. . +|..|..-+|+++
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 569999999999876 8999986531 111232 4577888888874 332 2 3666666666655
Q ss_pred ec
Q 000984 1180 MI 1181 (1198)
Q Consensus 1180 ~~ 1181 (1198)
.+
T Consensus 177 ra 178 (267)
T 2zu0_C 177 QM 178 (267)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 128
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.77 E-value=2.3e-19 Score=196.53 Aligned_cols=125 Identities=22% Similarity=0.344 Sum_probs=102.2
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
-|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 23699999999999999999999999999999999999999999998 46789
Q ss_pred ceeccccccc-cccHHHHHhcCCCC--------C-CCHHHHHHHHHHcchHHHHH----hccccccceeeeeec
Q 000984 1122 GLVSQEPVLF-NDTIRANIAYGKGG--------D-ATEAEIQAASEMANAHKFIC----SLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g~~~--------~-~tdeei~~Al~~A~l~dfI~----~LP~g~dt~v~~~~~ 1181 (1198)
++|||+|.+| ..|++|||.++... . ..++++.++++..++.++.. +|..|-.-+++++.+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARA 142 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHH
Confidence 9999999887 67999999986310 1 11356888999999887654 456666666665543
No 129
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.75 E-value=9e-21 Score=194.24 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=87.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC---CCeEEECCeecCCcC---HHHHh-cceE----EEcCCCCCCcccHHHHHh
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQ---LQWIR-KKIG----LVSQEPVLFTGSIKDNIA 481 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~---~~~~r-~~i~----~v~Q~~~l~~~ti~~Ni~ 481 (1198)
++++|+|+||||||||+++|+|+++|. .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988876 67888 4788 899999987 111
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEE
Q 000984 482 YGKDDATTEEIRVATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~il 544 (1198)
+ +++ . .+++++++.. +| |+||.++|+ |||||||||+||||++++|+++
T Consensus 77 -~----~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----SEE-E-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----CHH-H-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----Chh-h-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 111 1 6788999999 99 999999995 9999999999999999999874
No 130
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.74 E-value=1.6e-20 Score=200.51 Aligned_cols=168 Identities=16% Similarity=0.134 Sum_probs=105.7
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1198)
.++++| .++++||+++|+||||||||||+++|+|+++ .|.+++.....-.....++.++|++|++.+|. .|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999985 34554422111111223568999999998774 4666
Q ss_pred HHHhcCC---C-----CCCHHHHHHHH----------HHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhcc
Q 000984 478 DNIAYGK---D-----DATTEEIRVAT----------ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 478 ~Ni~~~~---~-----~~~~~~~~~~~----------~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~ 539 (1198)
+|+.... . ....++..+.. +..++.+.....| ..|| |++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 6663210 0 01122222221 1222222222222 2333 8999
Q ss_pred CCCEEEEeCCCCCC----CHHhHHHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEe
Q 000984 540 DPRILLLDEATSAL----DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1198)
Q Consensus 540 ~~~illlDe~ts~l----D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1198)
+|++++|||||+++ |+...+.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 5667778888887764 36899999999998865 99999984
No 131
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=1.1e-19 Score=207.50 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=124.4
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHH--hcceEEEcCCCC-CC-ccc
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TGS 475 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~-~~t 475 (1198)
.+||++++|++++|+|||||||||+++.|+|++.|.+|+|.++|.|+.... +..+ |..++|++|++. ++ ..|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 578889999999999999999999999999999999999999999986543 2223 467999999997 65 569
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCCC
Q 000984 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSAL 553 (1198)
Q Consensus 476 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~l 553 (1198)
+++|+.++.....+ .. .++.. |...........|| |||++||||+..+|+ +|+|| ||+++
T Consensus 229 v~e~l~~~~~~~~d---------~~---lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 229 LSKAVKRGKEEGYD---------VV---LCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHTTCS---------EE---EEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHhCCCH---------HH---HHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 99999864210000 00 01111 22111111122477 999999999999999 99999 99999
Q ss_pred CHHhHHHHHHHHHHHhCCCeEEEEecC---------cchhh-ccCEEEEEeCCE
Q 000984 554 DAESEKVVQEALDRIMVNRTTVIVAHR---------LSTVR-NADMIAVIHRGK 597 (1198)
Q Consensus 554 D~~~~~~i~~~i~~~~~~~t~i~itH~---------~~~~~-~~d~i~~l~~G~ 597 (1198)
|+.... +.+.+ ..+.|+|++||- ++... ..+.|..+..|+
T Consensus 291 D~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 291 NMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 998542 12222 237899999992 33333 367899998886
No 132
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.73 E-value=8.4e-21 Score=208.94 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=141.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCeEEECCeecCCcCHHHHhcceEEEcC-----CCCCCc
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQ-----EPVLFT 473 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 473 (1198)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 8999999999999999999999999999998 999999998876543 345677888 666678
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhc-----------------HHHHH------------HhCCCCccchhc
Q 000984 474 GSIKDNIAYGKDDA-------TTEEIRVATELAN-----------------AAKFI------------DKLPQGIDTLVG 517 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~-------~~~~~~~~~~~~~-----------------~~~~i------------~~l~~g~~t~v~ 517 (1198)
.+++.++.. .|+. +.+..+.+++.+. .+..+ ..+++++++.++
T Consensus 89 ~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 889999886 4443 5665555544321 11111 134568899999
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCE--EEEeCCCCCCCHHh---------HHHHHHHHHHHhCCCeEEEEecCcc
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAES---------EKVVQEALDRIMVNRTTVIVAHRLS 582 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~i--lllDe~ts~lD~~~---------~~~i~~~i~~~~~~~t~i~itH~~~ 582 (1198)
+++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..+++.++...+++|.+.++||++
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999 899999999999999 99999999999863 3467888888889999999999986
No 133
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.73 E-value=7.2e-20 Score=191.10 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=118.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHH
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~ 491 (1198)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.++. .++++++|++|+. .++ ++|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999998 999 999999886554 4688999999986 332 223221000000
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH-hHHH---hhccCCCEEEEeC--CCCCCCHHhHHHHHHHH
Q 000984 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI-AIAR---AILKDPRILLLDE--ATSALDAESEKVVQEAL 565 (1198)
Q Consensus 492 ~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri-~lAR---al~~~~~illlDe--~ts~lD~~~~~~i~~~i 565 (1198)
+...+..+|+.+..+|+|||+++ +|+| |+.++|++||||| |+...|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 01123478888999999999998 5566 7899999999999 88888887666666655
Q ss_pred HHHhCCCeEEE--Ee--cCcchhhccCEEEEEeCCEEEEec
Q 000984 566 DRIMVNRTTVI--VA--HRLSTVRNADMIAVIHRGKIVEKG 602 (1198)
Q Consensus 566 ~~~~~~~t~i~--it--H~~~~~~~~d~i~~l~~G~i~~~g 602 (1198)
.. .+++|+ ++ |+.+ ....|+|..+++|+|.+..
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 43 345554 34 9876 5567888888999998753
No 134
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.71 E-value=2.7e-19 Score=204.56 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=146.7
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCc-------CH
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-------QL 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-------~~ 455 (1198)
.++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|.|+.+|+.|.|.+.|.+.+++ ..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788899999963 35699999 99999999999999999999999999999999999999988653221 22
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHhHH
Q 000984 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-v~~~g~~lSgGqkqri~lA 534 (1198)
..+++.+.+++|.+. ...+++..+...+.+.+.... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 234555677766421 112344444444444444332 233321 123456899999 899999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC---CC-----eEEEEecCcchhhccCEEEEEeCCEEEEecChhh
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
+.+|++ |+++|+.....+.+.+++..+ +. |++++||+++ -.-||++++|.+|+|+..|++++
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 588887 999999999999998887752 55 8999999998 55699999999999999998887
Q ss_pred Hhc
Q 000984 607 LVE 609 (1198)
Q Consensus 607 l~~ 609 (1198)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
No 135
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.71 E-value=2.4e-20 Score=216.26 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=142.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCeEEECCeecCCcCHHHHhcceEEEcC-----CCCCCc
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQ-----EPVLFT 473 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 473 (1198)
++|++++ +++|+.++|+||||||||||+++|+|+++|. +|+|.+.|.++. + .++..+++++| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4567665 7899999999999999999999999999998 899987775553 2 35678999999 889999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhCCCCccchhc
Q 000984 474 GSIKDNIAYGKDDA-------TTEEIRVATELANA-----------------AKFI------------DKLPQGIDTLVG 517 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~v~ 517 (1198)
+++++|+.. .|+. +.+.++.+++.++. +..+ ..+++++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999996 4554 66777766665432 1111 124668899999
Q ss_pred CCCCCCChHHHHHHhHHHhhccCCCE--EEEeCCCCCCCHH----h-----HHHHHHHHHHHhCCCeEEEEecCcch
Q 000984 518 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAE----S-----EKVVQEALDRIMVNRTTVIVAHRLST 583 (1198)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~i--lllDe~ts~lD~~----~-----~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1198)
+++..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +...++.+....+++|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999965 2 33578888888889999999999874
No 136
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.70 E-value=2.8e-17 Score=199.92 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=71.4
Q ss_pred CCC-ChHHHHHHhHHHhhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCE
Q 000984 521 TQL-SGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1198)
Q Consensus 521 ~~l-SgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1198)
..| |||||||++||||++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999988877899999999999888899999996653
No 137
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.69 E-value=1.6e-16 Score=182.76 Aligned_cols=76 Identities=28% Similarity=0.387 Sum_probs=67.6
Q ss_pred CCCCCChHHHH------HHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEecCcchhhccCEEE
Q 000984 519 HGTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIA 591 (1198)
Q Consensus 519 ~g~~lSgGqkq------ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~ 591 (1198)
....||||||| |+++|||+..+|++|||||||++||+.....+.+.++++. +++|+|+|||+.+....||+|+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 34679999999 6788899999999999999999999999999999988764 4679999999988777899999
Q ss_pred EEe
Q 000984 592 VIH 594 (1198)
Q Consensus 592 ~l~ 594 (1198)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 138
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.68 E-value=2.7e-17 Score=185.96 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=119.4
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-eEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
++|+++++.+++|++++|+||+|||||||++.|+|.+.|.+| .|.+.+.+ .+...++.++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999877 77654433 3455666666555554422 2223
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH-HHHHhHHHhhccCCCEEEEeCCCC---C--
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ-KQRIAIARAILKDPRILLLDEATS---A-- 552 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq-kqri~lARal~~~~~illlDe~ts---~-- 552 (1198)
|+..+. .+.++..+.. .+.+... ++ .+.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~-----~~~l~~~--~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWF-----DELFGND--TF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHH-----HHHHSSS--CE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHH-----HHHhccC--CE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 333211 1112222111 1112211 11 2333335689999 77777 999999999999999999 4
Q ss_pred -CCH-HhHHHHHHHHHHHhC--CCeEEEEecCc--c--------------------hhh-ccCEEEEEeCCEE
Q 000984 553 -LDA-ESEKVVQEALDRIMV--NRTTVIVAHRL--S--------------------TVR-NADMIAVIHRGKI 598 (1198)
Q Consensus 553 -lD~-~~~~~i~~~i~~~~~--~~t~i~itH~~--~--------------------~~~-~~d~i~~l~~G~i 598 (1198)
+|. .....+.+.|+++.+ ++|+|+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 344567777776643 78999999995 4 454 5999999999875
No 139
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.67 E-value=1.5e-17 Score=214.01 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=121.7
Q ss_pred ccEEEEe-----EEEEcCCCCCCccccceeEEEeC-------CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee
Q 000984 382 GDIELRD-----VYFSYPARPNEQIFSGFSISISS-------GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1198)
Q Consensus 382 g~i~~~~-----v~~~y~~~~~~~~l~~i~l~i~~-------g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1198)
+.|+++| +++.|+. +..+++|++|++++ |++++|+||||||||||++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999842 35799999999987 999999999999999999999 98753
Q ss_pred cCCcCHHHHhcceE-EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 450 LKEFQLQWIRKKIG-LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 450 ~~~~~~~~~r~~i~-~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
..++| ||||++. ..|+.|||.. . .++.+.+. .+-.++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHh-----------hchhhhHHHHH
Confidence 23666 9999973 5567777642 1 11112111 12235677777
Q ss_pred HHHhHHHhhccCCCEEEEeCCCCCCCHHhH-HHHHHHHHHHh-C-CCeEEEEecCcchhhc-cCEEEEEeCCEEE--Eec
Q 000984 529 QRIAIARAILKDPRILLLDEATSALDAESE-KVVQEALDRIM-V-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKG 602 (1198)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~-~~i~~~i~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g 602 (1198)
+ +++||++..+|+++|||||++++|+... ..+.+.++.+. + ++|+|++||.++.+.. +|++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 9999999999999999999999999874 55667777664 3 7899999999998865 8998886 58887 556
Q ss_pred Chhh
Q 000984 603 THSK 606 (1198)
Q Consensus 603 ~~~~ 606 (1198)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5443
No 140
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.66 E-value=1.7e-18 Score=210.96 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=117.7
Q ss_pred CCccccceeE-EEeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc
Q 000984 398 NEQIFSGFSI-SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1198)
Q Consensus 398 ~~~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~--l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1198)
+.++|+++++ .+++|++++|+||||||||||++. +.|+++|.+|.|.++|.+. .......+++++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3579999999 999999999999999999999999 6799999999999999873 223444567899999987521
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCC--
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA-- 552 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~-- 552 (1198)
+|+.+...... ++.+++++..++.+.... ....|||| +|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~-----------~~~~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDASPD-PEGQEVVGGFDLSALIER-----------INYAIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECCCC-SSCCSCCSSHHHHHHHHH-----------HHHHHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecCcc-cchhhhhcccCHHHHHHH-----------HHHHHHHc-------------CCCEEEECCHHHHHH
Confidence 12211100000 000011111111111111 11234555 4779999999985
Q ss_pred ---CCHHhHHHHHHHHHHHh-CCCeEEEEecCcchh---------hc-cCEEEEEeCCE
Q 000984 553 ---LDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV---------RN-ADMIAVIHRGK 597 (1198)
Q Consensus 553 ---lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~---------~~-~d~i~~l~~G~ 597 (1198)
+|+...+.+.+.++.+. .++|+|++||+++.+ .. ||+|++|++|+
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 58888888888887764 479999999999874 44 99999999865
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=1.9e-16 Score=192.95 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=116.8
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHh-cCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGK 484 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~-~~~ 484 (1198)
+..+++|+.++|+|++|||||||++.++|...|. |. +.+.+++|++. .+++.|.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 3489999999999999999999999999998774 43 12567778762 35666653 22
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH-----hHH
Q 000984 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-----SEK 559 (1198)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~-----~~~ 559 (1198)
.+.++ .. . .|+..........|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 333 --~~~~~------------~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 333 --MDFEE------------ME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp --CCHHH------------HH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred --CCHHH------------HH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 12111 11 1 13444445556789999999999999999999999999 99999998 777
Q ss_pred HHHHHHHHHh-CCCeEEEEecCc----------chhhc-cCEEEEEeCCE
Q 000984 560 VVQEALDRIM-VNRTTVIVAHRL----------STVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 560 ~i~~~i~~~~-~~~t~i~itH~~----------~~~~~-~d~i~~l~~G~ 597 (1198)
.+.+.++.+. .+.|+|+++|.. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 7777776654 478999999998 66654 89999999987
No 142
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.65 E-value=1.6e-19 Score=191.23 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=120.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccH
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 476 (1198)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+.+++.+ +|+++++.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78887 599999889999998876 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH-hhccCCCEEEEeCCCCCCCH
Q 000984 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR-AILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 477 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR-al~~~~~illlDe~ts~lD~ 555 (1198)
++|+ +|. +.++++++++..... .....|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 567777777642110 011234466555321 12 567 89999999999999999999
Q ss_pred HhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeC
Q 000984 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
++++.|++.+....++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999998776544 34567 33 77999998864
No 143
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.64 E-value=1.3e-17 Score=183.01 Aligned_cols=166 Identities=13% Similarity=0.150 Sum_probs=104.3
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHH
Q 000984 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1198)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1198)
+.++|+|+||++++|+++||+||+|||||||+++|.|++ |.+.++ ..++.++|++|++....-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999976 665554 356789999999743356899
Q ss_pred HHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCC
Q 000984 478 DNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1198)
Q Consensus 478 ~Ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1198)
+|+.+..... +.+++.+ .++.+.++.+..+ ..||+||+||+++ +++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHR---------TLKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHH---------HHHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHH---------HHHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 9886532211 1122222 2222222333333 4799999999988 688999999999998
Q ss_pred CCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh-hc-cCEEEEEeCCEEEEecChhhHh
Q 000984 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~-~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
....|.. +.++ .+.|++++||....+ +. ++++ ++|+ +++++.
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8777754 2222 378999999974333 33 3333 5664 455554
No 144
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.63 E-value=6e-16 Score=154.13 Aligned_cols=88 Identities=25% Similarity=0.356 Sum_probs=74.6
Q ss_pred Cccchh-----cCCCCCCChHHHHHHhHH------HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEEEe
Q 000984 511 GIDTLV-----GEHGTQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1198)
Q Consensus 511 g~~t~v-----~~~g~~lSgGqkqri~lA------Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~it 578 (1198)
+++..+ .....+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|++|
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 455544 345678999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCcchhhccCEEEEE--eCCEE
Q 000984 579 HRLSTVRNADMIAVI--HRGKI 598 (1198)
Q Consensus 579 H~~~~~~~~d~i~~l--~~G~i 598 (1198)
|+.+....||++++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999766679999999 46643
No 145
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.62 E-value=3.2e-18 Score=199.12 Aligned_cols=175 Identities=16% Similarity=0.174 Sum_probs=118.4
Q ss_pred cccceeEEEeC--CCEEEEEcCCCCcHHHHHHHHhccCCCCC----CeEEE----CCeecCCcCHHHHhcceEEEcCCCC
Q 000984 401 IFSGFSISISS--GTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLI----DGINLKEFQLQWIRKKIGLVSQEPV 470 (1198)
Q Consensus 401 ~l~~i~l~i~~--g~~~~ivG~~GsGKStl~~~l~g~~~~~~----G~i~i----~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1198)
+.+.|++++++ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ .++..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99887 35555 4555555 56999999999
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc-cCCCEEEEeC-
Q 000984 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-KDPRILLLDE- 548 (1198)
Q Consensus 471 l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~-~~~~illlDe- 548 (1198)
+|.+|+++||.++.....+...+ .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 99999999999865322111111 12344556666666654 4777777777
Q ss_pred --CC------CCCCHHhHHHHHHHHHHHhC--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhH
Q 000984 549 --AT------SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 549 --~t------s~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|+ +++|+.....+.+.+.++.+ +.++++++|.-..-+.+|++.++++ +.+.|+++||
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 44 46777777777777765543 6677777765333333555555543 3344455554
No 146
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.61 E-value=2.3e-16 Score=196.93 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=117.5
Q ss_pred cccEEEEeEEEEcCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCeEEECCeecCCcCHHH
Q 000984 381 RGDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~g~~~~~~~~~~ 457 (1198)
.+.|++++. ++|-- .+..+++|+||+ |++++|+||||||||||++++.|+.. ++.|.+. . .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-p----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-P----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-S----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-e----------h
Confidence 346888887 44431 235799999999 99999999999999999999999874 6777652 1 1
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
.+.++++++| +|. -++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888877 454 366666542 258899999999999
Q ss_pred h--ccCCCEEEEeCC---CCCCCHHhH-HHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 000984 537 I--LKDPRILLLDEA---TSALDAESE-KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1198)
Q Consensus 537 l--~~~~~illlDe~---ts~lD~~~~-~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1198)
+ +.+|+++||||| |+++|..+. ..+.+.+.+ .++|+|++||+.+....+ .-.+.++++..
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~ 715 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAA 715 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEE
Confidence 9 999999999999 999999875 467777766 589999999998876655 22345555543
No 147
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.61 E-value=5.9e-17 Score=186.20 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=115.5
Q ss_pred ccccce-eEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCC----Ce-EEECCeecCCcCHHHHhcceEEEcCCCCC
Q 000984 400 QIFSGF-SISISSGTTAALVGQSGSGKSTVISLIERFY--DPQA----GE-VLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1198)
Q Consensus 400 ~~l~~i-~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~----G~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 471 (1198)
+.|+.+ ++.+++|++++|+||+|||||||++.+++.+ +|.. |+ |++++.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356665 6899999999999999999999999999998 5655 67 899987641 24578999999988
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc-------cCCCEE
Q 000984 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRIL 544 (1198)
Q Consensus 472 ~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~-------~~~~il 544 (1198)
+..++.+||.+.... + |.+|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999875431 1 234566666666666 689999
Q ss_pred EEeCCCCCCCHHh-------H-----HHHHHHHHHHh--CCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhhH
Q 000984 545 LLDEATSALDAES-------E-----KVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1198)
Q Consensus 545 llDe~ts~lD~~~-------~-----~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1198)
|+||||+.+|++. + +.+.+.+..+. .++|+|+++|....... ++.+.+...|++.+++.+..|
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999999999863 1 23333444433 37899999998765432 344567778888877765555
No 148
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=7.6e-16 Score=195.55 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=118.8
Q ss_pred ccEEEEeEEEEcCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHH--------hccCCCCCCeEEECCeecC
Q 000984 382 GDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--------ERFYDPQAGEVLIDGINLK 451 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l--------~g~~~~~~G~i~i~g~~~~ 451 (1198)
+.|.+++....+-.. .++.+++|++|++++|++++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888776544221 135789999999999999999999999999999999 55544443221
Q ss_pred CcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
++.+. .+|. .+| +.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11110 0110 001 00111 124788888888
Q ss_pred hHHHhh--ccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhh
Q 000984 532 AIARAI--LKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1198)
Q Consensus 532 ~lARal--~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1198)
.+|+++ ..+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...+++++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 899999999999999999877666 44555544 3789999999988888899999999999998888776
Q ss_pred H
Q 000984 607 L 607 (1198)
Q Consensus 607 l 607 (1198)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
No 149
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.60 E-value=5.6e-18 Score=181.49 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=105.7
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc---ccHHHHHhcCC-
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT---GSIKDNIAYGK- 484 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~ti~~Ni~~~~- 484 (1198)
.++|++++|+||+|||||||+++|.|++.| +++|++|++.++. -|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 478999999999999999999999998864 5899999998874 36777766532
Q ss_pred -C-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH----HHHHhHHHhhccCCCEEEEeCCCCC------
Q 000984 485 -D-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ----KQRIAIARAILKDPRILLLDEATSA------ 552 (1198)
Q Consensus 485 -~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq----kqri~lARal~~~~~illlDe~ts~------ 552 (1198)
+ ..+.+++.+.++..++. ..+...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRG-----------LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTT-----------CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcC-----------CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 2 12334555554433221 12223355678885 5799999999999999999999999
Q ss_pred -CCHHhHHHHHHHHHHHh--CCCeEEEEecCc
Q 000984 553 -LDAESEKVVQEALDRIM--VNRTTVIVAHRL 581 (1198)
Q Consensus 553 -lD~~~~~~i~~~i~~~~--~~~t~i~itH~~ 581 (1198)
||+..+..+.+.+.+.. +++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999988888887642 578999999984
No 150
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.59 E-value=1.6e-15 Score=180.36 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCChHHHHHHhHHHhhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC-CCeEEEEecCcchhhccCEEEEEe
Q 000984 522 QLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIH 594 (1198)
Q Consensus 522 ~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l~ 594 (1198)
.||||||||++|||++. ++|+++||||||++||+.....+.+.|.+..+ +.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 68999999999999999999999999988753 679999999988888899999985
No 151
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=3.8e-16 Score=169.56 Aligned_cols=152 Identities=17% Similarity=0.257 Sum_probs=100.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-------CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP-------QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-------~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni 480 (1198)
-+++|++++|+||||||||||++.|+|.+.+ ..|.+.+++.+. .. ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999997655 445778877542 11 2357778888888877999998
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh--ccCCCEEEEeCCCCCCCHHh-
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES- 557 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal--~~~~~illlDe~ts~lD~~~- 557 (1198)
.+.......+.. ...+. +.+.+. +++ ..+|++++|||||+.+|++.
T Consensus 95 ~~~~~~~~~~~~-~~~~~--~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 95 YVARAFNSNHQM-LLVQQ--AEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp EEEECCSHHHHH-HHHHH--HHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred EEEecCChHHHH-HHHHH--HHHHHH----------------------------HhcccCCceeEEEECChHHHhccccC
Confidence 875432221111 11100 111111 111 35899999999999999842
Q ss_pred ------H-----HHHHHHHHHHh--CCCeEEEEecC----cchhhc-cCEEEEEeCC
Q 000984 558 ------E-----KVVQEALDRIM--VNRTTVIVAHR----LSTVRN-ADMIAVIHRG 596 (1198)
Q Consensus 558 ------~-----~~i~~~i~~~~--~~~t~i~itH~----~~~~~~-~d~i~~l~~G 596 (1198)
+ ..+.+.+.++. .++|+|++||. ...+.. ||++++|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 13444554443 37999999994 444665 8999999875
No 152
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=5.8e-17 Score=199.74 Aligned_cols=190 Identities=18% Similarity=0.286 Sum_probs=121.8
Q ss_pred cEEEEeEEEEcCCCCCCccccce----------eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEEECCeecC
Q 000984 383 DIELRDVYFSYPARPNEQIFSGF----------SISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLK 451 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i----------~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~ 451 (1198)
.++++|+++.|+.. .+++|+.+ +++++. ++|+||+|||||||+++|.|++.| .+|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 23455444 366654 999999999999999999999988 7999999999863
Q ss_pred Cc---CHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 000984 452 EF---QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1198)
Q Consensus 452 ~~---~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGq 527 (1198)
.. ....+|++++|++|++.++. .||++||.++. +.+. + .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~----~-------~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIA----G-------EGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHH----C-------SSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhc----C-------Cccccc---
Confidence 21 23467889999999998874 68999986420 0010 0 111122
Q ss_pred HHHHhHHHhhccCCCEEEEeCC------CCCCCHHhHHHHHHHHHHHhC---CCeEEEEecCcchh--------hc----
Q 000984 528 KQRIAIARAILKDPRILLLDEA------TSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTV--------RN---- 586 (1198)
Q Consensus 528 kqri~lARal~~~~~illlDe~------ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~--------~~---- 586 (1198)
++++.++.+...+|+++|+||| |+++|+...+.+.+.++++.+ +-++++++|.++.. ..
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 3556667777789999999999 999999999999999988643 34667789987632 11
Q ss_pred -cCEEEEEeCCEEEEecChhhHh
Q 000984 587 -ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 587 -~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
...|+|+.++.+++.|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3568899988888888765544
No 153
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.56 E-value=7.9e-16 Score=176.28 Aligned_cols=147 Identities=20% Similarity=0.233 Sum_probs=105.1
Q ss_pred EeEEEEcCCCCCCccccceeE-------EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCeEEECCeecCCcCHHHH
Q 000984 387 RDVYFSYPARPNEQIFSGFSI-------SISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWI 458 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l-------~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~ 458 (1198)
.+++++|... ..+.|+++.+ ...+|+.++|+||||||||||+++|+|+++|. +|.|...+ |..++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh---h
Confidence 5677787543 3567777776 77899999999999999999999999999987 56664433 222221 1
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc
Q 000984 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1198)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~ 538 (1198)
+...++++|.+.-.. ..+.. + +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~------------------------------------~----~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFS------------------------------------E----ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHH------------------------------------H----HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHH------------------------------------H----HHHHHhh
Confidence 223455555432110 00110 0 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCC
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1198)
++|+++++|||| |.++.+.+.++ ...++|+++++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775554443 34589999999999999889999888544
No 154
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.54 E-value=2.1e-15 Score=169.30 Aligned_cols=151 Identities=23% Similarity=0.209 Sum_probs=102.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHH--hcceEEEcCCCCCCc-ccHHHHHhcC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPVLFT-GSIKDNIAYG 483 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~l~~-~ti~~Ni~~~ 483 (1198)
+|++++|+||||||||||++.|.|++.|++|+|.++|.|+.... +..+ |..+++++|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 2222 457999999998774 5888888642
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 000984 484 KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1198)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1198)
.. +... ..+-..++..+. ....++..+|||.+||||+..+|+.++| .||+.+...+.+
T Consensus 181 ~~-----------~~~d--~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 KA-----------RGYD--LLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HH-----------HTCS--EEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred Hh-----------CCCC--EEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 10 0000 000011111111 1112466779999999999999994444 344444333444
Q ss_pred HHHHHh--CCCeEEEEecCcch
Q 000984 564 ALDRIM--VNRTTVIVAHRLST 583 (1198)
Q Consensus 564 ~i~~~~--~~~t~i~itH~~~~ 583 (1198)
.++.+. .+.|+|++||.-..
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 444332 27899999998543
No 155
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.54 E-value=5.4e-17 Score=187.57 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=113.2
Q ss_pred EEEeEEEE---cCCCCCCccc---------cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC
Q 000984 385 ELRDVYFS---YPARPNEQIF---------SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1198)
Q Consensus 385 ~~~~v~~~---y~~~~~~~~l---------~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1198)
+|+|++|+ |+.. ++++| +++||.+++|+.++|+||||||||||+++|+|+++|.+|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 78899998 8532 23455 9999999999999999999999999999999999999999999985 45
Q ss_pred cCHHHHhcceEEEc-CCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 000984 453 FQLQWIRKKIGLVS-QEPVL---FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1198)
Q Consensus 453 ~~~~~~r~~i~~v~-Q~~~l---~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqk 528 (1198)
+.....+..+++++ |++.+ +..|+++||..+.....+..+...++..++.++++.+|.|.+|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 55555678899999 98876 788999999976543333222222233445678888999999989888777788899
Q ss_pred HHHhHHHh
Q 000984 529 QRIAIARA 536 (1198)
Q Consensus 529 qri~lARa 536 (1198)
+|+.....
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987753
No 156
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=6.2e-16 Score=180.37 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=99.5
Q ss_pred ccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+.|.++|++++|+. ..+++|++|+| +|+|+||||||||++.|+|...+..| .+|.++.... ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 45899999999963 46999999997 99999999999999999999876555 1333222111 111356
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+++++|++.++ ..||.||+.++... ..++.+.. +.+++.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 67999999876532 11111111 1122221 2345667899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 541 PR---ILLLDEAT-SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 541 ~~---illlDe~t-s~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
|+ ++++|||| +++|+..... ++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876433 33334578899999987654
No 157
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.53 E-value=5.8e-16 Score=170.35 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=106.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh--ccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE--RFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~--g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+++++++..++.- ..+|.+ .|++|++++|+||||||||||+++|+ |..++.+|.+.+++.+..+ .....+++
T Consensus 7 ~~~~~i~tg~~~l--D~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF--DELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT--GGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH--HHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 4455565555321 123433 68999999999999999999999999 6656777888887643221 12233456
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccC
Q 000984 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1198)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~ 540 (1198)
+++.+|++..+. -++.++....... ...+. . ... ...+.++.+....+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~---------~~~----~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEK-----------F---------VLE----DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-ccccc-----------e---------ecc----CcccHHHHHHHHHHHHHhhC
Confidence 788777652221 1222222110000 00000 0 000 01223444444444444579
Q ss_pred CCEEEEeCCCCCCC-----HHhHHHHHHHHHHHh-CCCeEEEEecCcchh----------hcc-CEEEEEeC
Q 000984 541 PRILLLDEATSALD-----AESEKVVQEALDRIM-VNRTTVIVAHRLSTV----------RNA-DMIAVIHR 595 (1198)
Q Consensus 541 ~~illlDe~ts~lD-----~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~----------~~~-d~i~~l~~ 595 (1198)
|++++|||||+.+| +...+.+.+.++.+. .++|+|++||.++.. ..| |+|++|++
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99999999999997 455555777776653 489999999998876 347 99999964
No 158
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.53 E-value=1.8e-14 Score=147.23 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=70.8
Q ss_pred CCCCChHHHHHHhHHHhhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE--
Q 000984 520 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI-- 593 (1198)
Q Consensus 520 g~~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l-- 593 (1198)
...||||||||++|||++. ++|+++||||||++||+.+.+.+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 5679999999999999999999999999988888999999999988899999865
Q ss_pred eCCEE
Q 000984 594 HRGKI 598 (1198)
Q Consensus 594 ~~G~i 598 (1198)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56643
No 159
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.52 E-value=4.2e-16 Score=166.54 Aligned_cols=169 Identities=14% Similarity=0.215 Sum_probs=99.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCCeEEE-------CCeecC
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLI-------DGINLK 451 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~-----~~~~G~i~i-------~g~~~~ 451 (1198)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|.|.. .|+.|.+.. ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999988 788887654 222221
Q ss_pred ---CcC--------HHHHhcceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcC
Q 000984 452 ---EFQ--------LQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGE 518 (1198)
Q Consensus 452 ---~~~--------~~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~ 518 (1198)
... .+.+++.++++.|++..+.+ .+..++..+.. ..++++.+ .+... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---------~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIE---------WAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHH---------HHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHH---------HHHHc--CCCeEEEEe
Confidence 110 12234444445443322221 22222222111 01112221 12111 2322 2466
Q ss_pred CCCCCChHHHHH-HhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhC
Q 000984 519 HGTQLSGGQKQR-IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570 (1198)
Q Consensus 519 ~g~~lSgGqkqr-i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~ 570 (1198)
+...+|+||||| +..+|+++.+|+.+++|||||++|......+.+.|.+..+
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 666799999999 8999999999999999999999999998888888877643
No 160
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=7.1e-16 Score=173.72 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=78.2
Q ss_pred EeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc-CCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 387 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~-~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
+|+++.|+. +.++++++|+| +|+|++|||||||++.|+|. ..|.+| |.++|.++.. .. . +..++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 477888853 46999999988 99999999999999999997 889999 8888877643 11 1 3568999
Q ss_pred cCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEE
Q 000984 466 SQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1198)
Q Consensus 466 ~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~il 544 (1198)
+|++.++ .-|+.|+..++......++.... .+.+.. -.+..+ .++|||||||+++|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l------~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTI------ISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTH------HHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHH------HHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 56888887765321111111111 111111 011222 358999999999999985 99
Q ss_pred EEeCCCCC-CCHHhHHHHHHHHHHHhC--CCeEEEEecCcc
Q 000984 545 LLDEATSA-LDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1198)
Q Consensus 545 llDe~ts~-lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~ 582 (1198)
++||||++ ||+... +.++.+.+ +.++|+..|++.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999985 999863 33444333 345666667764
No 161
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.51 E-value=2e-16 Score=176.59 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=93.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--- 487 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--- 487 (1198)
++.+++|+|++|||||||++.|.+++.+. | . . ++.+.+|+||+++++.++++|+.++.++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46799999999999999999999998763 2 0 0 34566679999999999999997653210
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccch------hcCCCCCCChHHHHHHhHH--HhhccCCCEEEEeCCCCCCCHHh
Q 000984 488 TTEEIRVATELANAAKFIDKLPQGIDTL------VGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAES 557 (1198)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~------v~~~g~~lSgGqkqri~lA--Ral~~~~~illlDe~ts~lD~~~ 557 (1198)
.....-.+.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+++++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011112334567788899997653 4566789999999999998 666 999999999999999875
No 162
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.48 E-value=2.1e-14 Score=155.97 Aligned_cols=166 Identities=15% Similarity=0.055 Sum_probs=110.6
Q ss_pred CccccceeE-EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhc---ceEEEcCCCCCCcc
Q 000984 399 EQIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK---KIGLVSQEPVLFTG 474 (1198)
Q Consensus 399 ~~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~ 474 (1198)
-+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+. +.+.++. .+++.+|+..-
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 457888887 8999999999999999999999999998888888887765433 2222222 23333332110
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCC--EEEEeCCCCC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~ 552 (1198)
+++.+-.. ... .. + ...+. ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~~~~-~~~--------------~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LMK--------------EK-----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-ccc--------------cc-----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01110000 000 00 0 00011 1348999988888877778999 9999999988
Q ss_pred C--CHHhHHHHHHHHHHHh--CCCeEEEEecCc--------chhhc-cCEEEEEeCCE
Q 000984 553 L--DAESEKVVQEALDRIM--VNRTTVIVAHRL--------STVRN-ADMIAVIHRGK 597 (1198)
Q Consensus 553 l--D~~~~~~i~~~i~~~~--~~~t~i~itH~~--------~~~~~-~d~i~~l~~G~ 597 (1198)
+ |+...+.+.+.++++. .+.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9887777777777664 378999999998 34554 99999998653
No 163
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.47 E-value=1.2e-14 Score=183.98 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=107.8
Q ss_pred ccEEEEeEEEEcC----CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH
Q 000984 382 GDIELRDVYFSYP----ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1198)
Q Consensus 382 g~i~~~~v~~~y~----~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1198)
+.|.+++...-.= ...++.+++|++|++++|++++|+||||||||||++.+.+..-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 3577777543220 112467999999999999999999999999999999987532110
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
..-.++|++..-+ .+.+++. . ..++.+ .+..+-..+|+|++|+..++|+
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i~-~--------------~ig~~d-----------~l~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGIF-T--------------RMGAAD-----------NIYKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEEE-E--------------EC---------------------CCHHHHHHHHHHHHHH-
T ss_pred --hcCccccchhhhh--hHHHHHH-H--------------hCChHH-----------HHHHhHHHhhHHHHHHHHHHHh-
Confidence 0011222221000 0000000 0 001111 1122235689999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHh--CCCeEEEEecCcchhhccCEEEE-EeCCEEE
Q 000984 538 LKDPRILLLDEATSALDAESEKVVQ-EALDRIM--VNRTTVIVAHRLSTVRNADMIAV-IHRGKIV 599 (1198)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~-~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~-l~~G~i~ 599 (1198)
..+|+++||||||+++|+.....+. ..++.+. .++|+|++||..+....+|+.-- +.++++.
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 7899999999999999999877665 5555543 47999999999988776765431 4455543
No 164
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.45 E-value=1.1e-14 Score=149.07 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCcccCCCC---hHHHH-hhcc----eeccccccccccHHHHHh
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEIQKLQ---LKWLR-QQMG----LVSQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~---~G~I~IDG~dI~~i~---l~~LR-~~Is----iV~Qdp~LF~gTIreNI~ 1140 (1198)
+++||||+||||||||+++|.|+|+|+ .|.|++||.|+.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999999887 88999 5899 899999998 222
Q ss_pred cCCCCCCCHHHHHHHHHHcchHHHHHh-ccccccceee
Q 000984 1141 YGKGGDATEAEIQAASEMANAHKFICS-LQQVRTSRLL 1177 (1198)
Q Consensus 1141 ~g~~~~~tdeei~~Al~~A~l~dfI~~-LP~g~dt~v~ 1177 (1198)
+ . +++ .|+++++|.. || ||||.|.
T Consensus 77 -~-----~-~~~-----~a~l~~~i~~~l~-g~dt~i~ 101 (171)
T 2f1r_A 77 -V-----S-EEE-----GNDLDWIYERYLS-DYDLVIT 101 (171)
T ss_dssp -C-----C-HHH-----HTCHHHHHHHHTT-TCSEEEE
T ss_pred -C-----C-hhh-----hhCHHHHHHhhCC-CCCEEEE
Confidence 1 1 222 7899999999 99 9999876
No 165
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.43 E-value=3.7e-14 Score=178.22 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=109.9
Q ss_pred ccEEEEeEEEEcCCC----CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEEECCeecCCcCHH
Q 000984 382 GDIELRDVYFSYPAR----PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQLQ 456 (1198)
Q Consensus 382 g~i~~~~v~~~y~~~----~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~~~~~ 456 (1198)
+.|.+++.. +|-- .++.+++|++|+ ++|++++|+||||||||||++++.|...+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 347777653 3310 235689999999 99999999999999999999999997432 2231 1111
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
-+.++++++| +|. -++.||+..+ . ..+|+|+++. +.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~----------------------------~--------stf~~e~~~~-~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG----------------------------R--------STFMVEMTET-ANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHHH-HHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh----------------------------h--------hhhhHHHHHH-HHHH
Confidence 1235666665 342 3455554321 1 2356676654 4444
Q ss_pred hhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHh--CCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 000984 536 AILKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1198)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1198)
....+|+++|||||++++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 45789999999999999998765443 55565554 37899999999988877898888888887643
No 166
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.42 E-value=4.3e-13 Score=149.93 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=98.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHh-cCCCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGKDD 486 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~-~~~~~ 486 (1198)
.+++|++++|+||+|||||||++.+++.+. .|.+ +.|.+..+ +..+.|++.+... ..++.++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 378999999999999999999999998664 4665 33443211 2467787765432 22333322 121 1
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC--CCCHHhH---HHH
Q 000984 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS--ALDAESE---KVV 561 (1198)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts--~lD~~~~---~~i 561 (1198)
....+....++.. ++....+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l-----------~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGL-----------LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHE-----------EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCce-----------EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 2232222222221 233334556778999998875 68889999999999999 9998654 566
Q ss_pred HHHHHHHh--CCCeEEEEecCcchh
Q 000984 562 QEALDRIM--VNRTTVIVAHRLSTV 584 (1198)
Q Consensus 562 ~~~i~~~~--~~~t~i~itH~~~~~ 584 (1198)
.+.+..+. .++|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 66776663 379999999987654
No 167
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.42 E-value=1.2e-14 Score=155.33 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=100.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcc-cH----HHHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SI----KDNI 480 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti----~~Ni 480 (1198)
..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..+..++|++|++.+|.. ++ .||+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 5689999999999999999999999999986 68999888866543 235679999999877754 44 3444
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHH
Q 000984 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1198)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1198)
.+....+ |-.+++ ++.++..++++||| ||+.+.+.
T Consensus 88 ~~~~~~y-------------------------------------g~~~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 88 EVFGNYY-------------------------------------GTSREA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EETTEEE-------------------------------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHhccC-------------------------------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 4321100 000111 23334456999999 99999998
Q ss_pred HHHHHHHHhCCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhhHhc
Q 000984 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1198)
Q Consensus 561 i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1198)
+.+.+. +++|+++++|+++.+.. |+ +.+| .++++++.+
T Consensus 123 i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 888765 57899999999998765 32 5666 567776643
No 168
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.39 E-value=2e-15 Score=171.59 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=108.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC--------CCCCCeEEECCeecCCcC---------------HHHHhcceEEE---c
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY--------DPQAGEVLIDGINLKEFQ---------------LQWIRKKIGLV---S 466 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~--------~~~~G~i~i~g~~~~~~~---------------~~~~r~~i~~v---~ 466 (1198)
++++|+|++|||||||++.|+|.. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987653 34677789988 7
Q ss_pred CCCCC-CcccHHHHHhcCCCCCCHHHHHHHH-HHhcHHHHHHhCCCCccchhcC-----CCCCCChHHHHHHhHHHhhcc
Q 000984 467 QEPVL-FTGSIKDNIAYGKDDATTEEIRVAT-ELANAAKFIDKLPQGIDTLVGE-----HGTQLSGGQKQRIAIARAILK 539 (1198)
Q Consensus 467 Q~~~l-~~~ti~~Ni~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~g~~t~v~~-----~g~~lSgGqkqri~lARal~~ 539 (1198)
|++.+ +..++.||..++.| ..+.... ......+ -..+ ++.-+.++- .-.++|+|||||...+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~-~~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQ-RYLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHH-HEEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccC-eEEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 68899999987643 2221111 0000000 0001 011122211 012589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcc
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~ 582 (1198)
+|+++ ||| +.+.+.++++..+.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 888 566677777667889999999743
No 169
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.38 E-value=2.4e-15 Score=171.36 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=102.3
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-cccCCcccEE---------
Q 000984 976 KATFSDVFKVFFSLTMTAIGISQSSS-FSSDSNKAKSAAASIFAIIDRESKIDPSDESGT-ILEDVKGEIE--------- 1044 (1198)
Q Consensus 976 ~~t~g~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~-~~~~~~G~I~--------- 1044 (1198)
.++.+.+..+..++.....+ .+.. ..+.++....+.+|+..+++.|... ...... ......+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~--~~~~~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN--DETISISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS--TTCCEEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC--CCCceEEEeCCCCCCCCHHHHHhCCC
Confidence 57888888887776654443 2222 2233333334456777766533211 110000 0011234567
Q ss_pred EeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhccee
Q 000984 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124 (1198)
Q Consensus 1045 f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV 1124 (1198)
|+||+| | .++++++||.|++|+.++|+||||||||||+++|.|+++|++|.|.|+|.+ ++.+..+|++++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 889999 8 259999999999999999999999999999999999999999999999986 45555578889988
Q ss_pred ccccccccccHHHHHh
Q 000984 1125 SQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1125 ~Qdp~LF~gTIreNI~ 1140 (1198)
+|. .-+.|.+|+
T Consensus 223 ~gg----g~~~r~~la 234 (330)
T 2pt7_A 223 FGG----NITSADCLK 234 (330)
T ss_dssp CBT----TBCHHHHHH
T ss_pred eCC----ChhHHHHHH
Confidence 761 126666765
No 170
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.38 E-value=2e-15 Score=161.09 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcC-CCCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDA 487 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~-~~~~ 487 (1198)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+|+...++.+.++|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999876 4 157888888888888877776311 0000
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCC--ccchhcCCCCCCChHHHHHHhHH-HhhccCCCEEEEeCCC
Q 000984 488 TTEEIRVATELANAAKFIDKLPQG--IDTLVGEHGTQLSGGQKQRIAIA-RAILKDPRILLLDEAT 550 (1198)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~l~~g--~~t~v~~~g~~lSgGqkqri~lA-Ral~~~~~illlDe~t 550 (1198)
..+.+...+.+.+..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0001111222334444444 67788999999999999999998 9999999888899984
No 171
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.38 E-value=8.7e-15 Score=147.79 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=75.3
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcce
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
+-+|++++|. +..+++++||+|++|+.+||+||+|||||||+++|.|+. |++|+|.++|.++.+. ...+ .+
T Consensus 9 ~~~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~ 79 (158)
T 1htw_A 9 PDEFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GK 79 (158)
T ss_dssp CSHHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TE
T ss_pred CCHHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cc
Confidence 3456677774 236999999999999999999999999999999999999 9999999999998531 1122 28
Q ss_pred eccccccccccHHHHHh-cC
Q 000984 1124 VSQEPVLFNDTIRANIA-YG 1142 (1198)
Q Consensus 1124 V~Qdp~LF~gTIreNI~-~g 1142 (1198)
|+|++.+|.-|+.||+. +|
T Consensus 80 ~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 80 MIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEEECTTCSCTTHHHHST
T ss_pred ceeccccccCCcHHHHHHcC
Confidence 99999999889999995 45
No 172
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=4.4e-14 Score=163.64 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=110.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcc
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1198)
+++++ ++.|++ .+ |+++||++++|+. ++|+||||||||||+++|+|+. ++|.++........+..
T Consensus 17 l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred EEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 55566 778853 34 9999999999999 9999999999999999999983 34444443333334568
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHH----HHHhcHHHHHHhC-------CCCccch-------hcCCCCC
Q 000984 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVA----TELANAAKFIDKL-------PQGIDTL-------VGEHGTQ 522 (1198)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~----~~~~~~~~~i~~l-------~~g~~t~-------v~~~g~~ 522 (1198)
++|++|++.++ ..|+.||+.+|.. .+.+..|.. .+ ....+.+... +..-++. +-+.+..
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 99999999887 5799999998764 332221111 11 1112222222 1112222 2334456
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHH-Hh-CCCeEEEEe
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR-IM-VNRTTVIVA 578 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~-~~-~~~t~i~it 578 (1198)
|+-.+ +.++++|..+++|+++|+|+..|.+.....+.+.|++ +. .+..++.++
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 77666 7899999999999999999999988766667777775 32 345665555
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.37 E-value=1.2e-12 Score=140.53 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=95.1
Q ss_pred ccccceeE-EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 400 QIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 400 ~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
+.|+.+.. -+++|++++|+||+|||||||++.+++ .+..+ +.|+..+..+-...+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~--------------------v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK--------------------VAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE--------------------EEEEESSCCCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc--------------------EEEEECCCCCCHHHHHH
Confidence 45666655 689999999999999999999999999 32222 33333333211122222
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH--HHHHHhHHHhhccC-CCEEEEeCCCCCCCH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARAILKD-PRILLLDEATSALDA 555 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgG--qkqri~lARal~~~-~~illlDe~ts~lD~ 555 (1198)
.... ...+.++ ....+ .+. ..+++ |+|+++.+|+++++ |+++++||||+.+|+
T Consensus 65 ~~~~--~~~~~~~------------~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAET--RGLNPEE------------ALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHT--TTCCHHH------------HHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHh--cCCChHH------------HhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 2211 0111111 11111 111 23344 47899999999986 999999999999997
Q ss_pred HhH-----H---HHHHHHHHHhC--CCeEEEEecCcc-------------hhh-ccCEEEEEeCC
Q 000984 556 ESE-----K---VVQEALDRIMV--NRTTVIVAHRLS-------------TVR-NADMIAVIHRG 596 (1198)
Q Consensus 556 ~~~-----~---~i~~~i~~~~~--~~t~i~itH~~~-------------~~~-~~d~i~~l~~G 596 (1198)
... + .+.+.++++.+ ++|+|+++|... .+. .||+|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 532 2 34444555543 789999999865 333 59999999754
No 174
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.36 E-value=8.1e-14 Score=149.52 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=63.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-HHHHhhcceecccccccc-----
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQMGLVSQEPVLFN----- 1132 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l-~~LR~~IsiV~Qdp~LF~----- 1132 (1198)
..|+||||+|++|+.+|||||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.+++++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 988865432 346789999999986653
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHcc
Q 000984 1133 ------DTIRANIAYGKGGDATEAEIQAASEMAN 1160 (1198)
Q Consensus 1133 ------gTIreNI~~g~~~~~tdeei~~Al~~A~ 1160 (1198)
+++++| .||. .++++.++++...
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNK 115 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTC
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCC
Confidence 455566 4542 3456666666543
No 175
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.35 E-value=7.7e-14 Score=153.39 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=84.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHHHhhc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWLRQQM 1121 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~-~G~I~IDG~dI~~i~l~~LR~~I 1121 (1198)
++++|++|. ++|+|+| +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.|+..+. ++.+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 467787752 3899999 9999999999999999999999999999998 999999999987653 4567
Q ss_pred ceecc-----ccccccccHHHHHhcCCC----CCC-CHHHHHHHHHHc
Q 000984 1122 GLVSQ-----EPVLFNDTIRANIAYGKG----GDA-TEAEIQAASEMA 1159 (1198)
Q Consensus 1122 siV~Q-----dp~LF~gTIreNI~~g~~----~~~-tdeei~~Al~~A 1159 (1198)
++|+| ++..|..+|+.+|+.++. ++. +.+.++++++.+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 88999 777889999999998631 122 566666666654
No 176
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.34 E-value=5.5e-14 Score=148.50 Aligned_cols=82 Identities=23% Similarity=0.420 Sum_probs=71.6
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHhhcceecccccccccc
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R~yd-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1198)
+++|++++||||||||||||+++|.|+|+ |..|. +||+|+..++.+.+|+.+ +|++++|.+|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 46899999999999999999999999997 78897 699999999999999986 7999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHc
Q 000984 1135 IRANIAYGKGGDATEAEIQAASEMA 1159 (1198)
Q Consensus 1135 IreNI~~g~~~~~tdeei~~Al~~A 1159 (1198)
+++|+ || .++++++++++.+
T Consensus 76 ~~~n~-~g----~~~~~i~~~~~~~ 95 (198)
T 1lvg_A 76 FSGNL-YG----TSKEAVRAVQAMN 95 (198)
T ss_dssp ETTEE-EE----EEHHHHHHHHHTT
T ss_pred ecCcc-CC----CCHHHHHHHHHcC
Confidence 99998 76 3688999999864
No 177
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.34 E-value=2.2e-14 Score=150.77 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=86.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA 487 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~ 487 (1198)
.+++|++++|+||+|||||||++.|.|. |..|.|.++|.++..... .++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4779999999999999999999999998 678999999876532211 1234678888664 4568888886421
Q ss_pred CHHHHHHHHHHhcHHHHHHhCC--CCccchh--cCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 000984 488 TTEEIRVATELANAAKFIDKLP--QGIDTLV--GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1198)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~l~--~g~~t~v--~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1198)
..+ .. .+....++.+. .+++... +.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 77 --~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 --GRY---AK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp --HHH---HH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred --HHH---hc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 00 00000000000 0111111 3334579999999999999999999876 57765555544
Q ss_pred HH
Q 000984 564 AL 565 (1198)
Q Consensus 564 ~i 565 (1198)
.+
T Consensus 143 ~~ 144 (191)
T 1zp6_A 143 QF 144 (191)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 178
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.33 E-value=5.6e-14 Score=163.29 Aligned_cols=122 Identities=23% Similarity=0.311 Sum_probs=102.0
Q ss_pred ccccceEEeeC--CCEEEEEcCCCCCHHHHHHHHhcccCCCC----CeEEE----CCcccCCCChHHHHhhcceeccccc
Q 000984 1060 VFRDLNLKIRA--GKTVALVGESGSGKSTVVSLLQRFYDPDA----GHITL----DGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1198)
Q Consensus 1060 vL~~is~~I~~--GekvaIVG~SGSGKSTL~~lL~R~ydp~~----G~I~I----DG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1198)
+.+.|+++|++ |+++||||+||||||||+++|.|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99997 47777 6677777 66999999999
Q ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeeeee---cccc
Q 000984 1130 LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLVM---IPWL 1184 (1198)
Q Consensus 1130 LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~~~---~~~~ 1184 (1198)
+|++|+++||.++.. +..+..++......+...++..++.+++..+.+.- .||.
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~ 291 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV 291 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC--
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc
Confidence 999999999998743 45567777777777889999999988777764433 3885
No 179
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.31 E-value=5.8e-14 Score=158.30 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=72.3
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEE-----------------------eeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLK-----------------------IRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~-----------------------I~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.++.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.+++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999993 478887775 8999999999999999999999999999
Q ss_pred CCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhc
Q 000984 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1198)
Q Consensus 1096 dp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~ 1141 (1198)
+|..|. +++++|+||+++|..|+++|+.+
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~ 143 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNL 143 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTC
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHH
Confidence 998663 57899999999999999999975
No 180
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.30 E-value=3.4e-13 Score=156.13 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=81.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHHHhhcceecc-----cccccc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWLRQQMGLVSQ-----EPVLFN 1132 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~-~G~I~IDG~dI~~i~l~~LR~~IsiV~Q-----dp~LF~ 1132 (1198)
++|++++ +++|+.++|||||||||||++++|.|+++|+ +|+|.++|.++. + .+|+++++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3678776 8999999999999999999999999999998 899988877764 2 36789999999 999999
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHcch
Q 000984 1133 DTIRANIAYGKGGDA-------TEAEIQAASEMANA 1161 (1198)
Q Consensus 1133 gTIreNI~~g~~~~~-------tdeei~~Al~~A~l 1161 (1198)
++|++||++++ +. ++++++.|++.++.
T Consensus 200 ~~l~~~L~~~p--d~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 200 DALRAALREDP--DVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp HHHHHHTTSCC--SEEEESCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHhhhCc--CEEEECCCCCHHHHHHHHHHHhc
Confidence 99999999863 44 67778888887764
No 181
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.27 E-value=3.9e-12 Score=138.95 Aligned_cols=146 Identities=19% Similarity=0.297 Sum_probs=87.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCC-----CCCeEEECCeecCC-cCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIER--FYDP-----QAGEVLIDGINLKE-FQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~-----~~G~i~i~g~~~~~-~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
-+++|++++|+||+|||||||++.|++ ..+| ..|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 488999999999999999999999999 4554 56788888765211 1123334455655543 4555
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc--cCCCEEEEeCCCCCCCHH-
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDAE- 556 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~lD~~- 556 (1198)
+.+..+ .+.++.... +.-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 544322 222222211 11111111 689999999999999985
Q ss_pred ------hHH-----HHHHHHHHHh--CCCeEEEEecCcchh-------------------h-ccCEEEEEeCC
Q 000984 557 ------SEK-----VVQEALDRIM--VNRTTVIVAHRLSTV-------------------R-NADMIAVIHRG 596 (1198)
Q Consensus 557 ------~~~-----~i~~~i~~~~--~~~t~i~itH~~~~~-------------------~-~~d~i~~l~~G 596 (1198)
.++ .+.+.+..+. .++|+|+++|..... . .||.+++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 322 2333344332 378999999965432 2 48999999865
No 182
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.26 E-value=3.7e-13 Score=158.54 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=84.6
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc---ccCCCC----
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV---EIQKLQ---- 1113 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~---dI~~i~---- 1113 (1198)
+.++++||++.|+. +..||+++ |+|++||++||+|+||||||||+++|.|+++|++|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45899999999963 34699999 999999999999999999999999999999999999999999 665532
Q ss_pred -hHHHHhhcceeccc--cccccccHHHHHhc
Q 000984 1114 -LKWLRQQMGLVSQE--PVLFNDTIRANIAY 1141 (1198)
Q Consensus 1114 -l~~LR~~IsiV~Qd--p~LF~gTIreNI~~ 1141 (1198)
...+++.+++|+|+ |.+..-|+.+|+.+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 45688999999994 45567799999865
No 183
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.24 E-value=4.8e-12 Score=148.16 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=102.7
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHH--HhcceEEEcCCCCCC-cc
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQW--IRKKIGLVSQEPVLF-TG 474 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~--~r~~i~~v~Q~~~l~-~~ 474 (1198)
-+++||++++|++++|+|+||||||||++.|.|++.+.+|+|.++|.|+.... +.. .|.+|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999888775432 122 467899999998765 57
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCC-----CCCChHHHHHHhHHHhhcc-CC-CEEEE
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHG-----TQLSGGQKQRIAIARAILK-DP-RILLL 546 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g-----~~lSgGqkqri~lARal~~-~~-~illl 546 (1198)
|+++|+.++... |.|..+ ..-| .++-.--+|++.++|++.. .| .++|.
T Consensus 363 tV~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 363 VIFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 899999864210 111111 1111 1121223578889998754 45 36666
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEec
Q 000984 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579 (1198)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH 579 (1198)
.||+.+.|.... .+.+.+. -+.|.+++||
T Consensus 419 LDattGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 668877554321 1122221 3679999999
No 184
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.4e-13 Score=162.98 Aligned_cols=122 Identities=14% Similarity=0.053 Sum_probs=91.2
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-e-EEECCcccCCCChHHHH
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-H-ITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~-I~IDG~dI~~i~l~~LR 1118 (1198)
+-|+++||+|+|+ ++||+|++|++++|+||+|||||||+++|++++.|++| + |++|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4588999998883 79999999999999999999999999999999999999 9 99999 2 47
Q ss_pred hhcceecccccccc----ccHHHHHhcCCCC---CCCHHHHHHHHHHcchHHH--HHhccccccceeeeeec
Q 000984 1119 QQMGLVSQEPVLFN----DTIRANIAYGKGG---DATEAEIQAASEMANAHKF--ICSLQQVRTSRLLLVMI 1181 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~----gTIreNI~~g~~~---~~tdeei~~Al~~A~l~df--I~~LP~g~dt~v~~~~~ 1181 (1198)
+++++|||++.+|. .|++||+ ++... ...++.+.++++..++.++ ..+|..|...++++..+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra 249 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVG 249 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHH
Confidence 89999999997664 4899999 75321 1112334444555554333 34555565555555444
No 185
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.20 E-value=3.3e-13 Score=154.20 Aligned_cols=177 Identities=14% Similarity=0.195 Sum_probs=115.1
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC----HHHHhcc
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKK 461 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~r~~ 461 (1198)
++|+++.|. ...+|+++|+++++|++++|+|++|||||||++.|.|++.|.+|+|.+.|.|+.... ....|.+
T Consensus 32 ~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 32 SRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp CSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 344555563 235899999999999999999999999999999999999999999999998875432 1234678
Q ss_pred eEEEcCCCCCCc----------cc---HHHHHh-c---CCC---------CCCHHHHHHHHHH-------------hcHH
Q 000984 462 IGLVSQEPVLFT----------GS---IKDNIA-Y---GKD---------DATTEEIRVATEL-------------ANAA 502 (1198)
Q Consensus 462 i~~v~Q~~~l~~----------~t---i~~Ni~-~---~~~---------~~~~~~~~~~~~~-------------~~~~ 502 (1198)
+++++|+|.+|. || ++|.+. + +.+ ..++..+.+.++. ..+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 999999998874 22 333321 0 000 0011111100000 0000
Q ss_pred HHHHhCCCCcc-chhcC-CCCCCChHHHHHHhHHHhhcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 503 KFIDKLPQGID-TLVGE-HGTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 503 ~~i~~l~~g~~-t~v~~-~g~~lSgGqkqri~lARal~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
+.+...|+-+- +.+.. ....+|+|++|++..|++++. +|+++. +||+|.+.-..+.+.|.+..
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 00111121000 11111 113478999999999999987 688876 99999999888888887653
No 186
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.19 E-value=8e-13 Score=133.38 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=70.6
Q ss_pred eEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcC
Q 000984 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1198)
Q Consensus 388 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 467 (1198)
|++++|+ +..+++++||++++|++++|+||+|||||||+++|+|++ |.+|+|.++|.++.+. ...+ .+++|
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 4455563 246899999999999999999999999999999999999 9999999999887421 1111 27999
Q ss_pred CCCCCcccHHHHHhc
Q 000984 468 EPVLFTGSIKDNIAY 482 (1198)
Q Consensus 468 ~~~l~~~ti~~Ni~~ 482 (1198)
++.+|.-|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 998888899999853
No 187
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.18 E-value=4.3e-12 Score=140.18 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=61.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHHHHHhcCCCC--CCCH
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGG--DATE 1149 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI~~g~~~--~~td 1149 (1198)
++|||||||||||||+++|+++..|++|+|.++|.++.. ...|+.+++++|++.++.. |+.||+.||... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998843 3457889999999988865 999999988431 1223
Q ss_pred HHHHHHHHHcchHHHHHhcccccccee
Q 000984 1150 AEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1150 eei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+.+.+.++....+.....|..|..-++
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv 107 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRI 107 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSC
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhh
Confidence 455555554444555667777776554
No 188
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.17 E-value=8.5e-14 Score=162.57 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=87.3
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC----cCHHHHhcceEEEc---------C
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQWIRKKIGLVS---------Q 467 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~~r~~i~~v~---------Q 467 (1198)
+|+++ + .++|+.++|+||||||||||+++|+|+++|.+|+|.++|.++.. ++...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 37899999999999999999999999999999999999877632 11122344565544 9
Q ss_pred CCCCC--c-----ccHHHHHhcCCC---------CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 000984 468 EPVLF--T-----GSIKDNIAYGKD---------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1198)
Q Consensus 468 ~~~l~--~-----~ti~~Ni~~~~~---------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri 531 (1198)
+|.++ . .|+++|+.++.. ..+..+....+... |++... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l-----------gl~~~~--~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM-----------GIEPFL--ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH-----------TCCHHH--HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc-----------CCcHHH--HHHHHHHHHHHH-
Confidence 99753 2 489999875311 01112222222221 222211 234799999999
Q ss_pred hHHHhhccCCCEEEE
Q 000984 532 AIARAILKDPRILLL 546 (1198)
Q Consensus 532 ~lARal~~~~~illl 546 (1198)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 189
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.16 E-value=1.1e-13 Score=145.31 Aligned_cols=162 Identities=13% Similarity=0.055 Sum_probs=103.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHH
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTE 490 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~ 490 (1198)
|++++|+||+|||||||++.|.+ +.+|.+.++|.++.+. ...++++|.+... ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 67899999999999999999997 6679999988554321 2456777765322 347777765310
Q ss_pred HHHHHHHHhcHHHHHHhCCCCccchhcC--------CCCCC--ChHHHHHHhHHH------hhccCCCEEEEeCCCCCCC
Q 000984 491 EIRVATELANAAKFIDKLPQGIDTLVGE--------HGTQL--SGGQKQRIAIAR------AILKDPRILLLDEATSALD 554 (1198)
Q Consensus 491 ~~~~~~~~~~~~~~i~~l~~g~~t~v~~--------~g~~l--SgGqkqri~lAR------al~~~~~illlDe~ts~lD 554 (1198)
... .. .|.+..+.. .-..+ |+||+|++.++. +++++++...+|+ ++|
T Consensus 67 --~~~---------~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 67 --VNF---------LL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp --HHH---------HH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred --HHH---------Hh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 000 00 011111110 00123 888888888888 8888888877884 789
Q ss_pred HHhHHHHHHHHHHHhC-CCeEEEEecC-cchhhc-cCEEEEEeCCEEEEecChhhHh
Q 000984 555 AESEKVVQEALDRIMV-NRTTVIVAHR-LSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1198)
Q Consensus 555 ~~~~~~i~~~i~~~~~-~~t~i~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1198)
+...+. .+.+....+ +.++|..+|. ++.+.. ||+|+ ++|+++..|+++-|.
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 887666 666666543 5788889999 888876 99998 999999999887663
No 190
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.16 E-value=5.1e-11 Score=138.49 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=67.0
Q ss_pred CCCChHHHHHH------hHHHhhccC-CCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchhhccCEEEEE
Q 000984 521 TQLSGGQKQRI------AIARAILKD-PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1198)
Q Consensus 521 ~~lSgGqkqri------~lARal~~~-~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1198)
..||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.+.++.+++++|++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 668999999 99999999999999999999999998865567999999999866679999999
Q ss_pred e
Q 000984 594 H 594 (1198)
Q Consensus 594 ~ 594 (1198)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 191
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.16 E-value=2.4e-13 Score=163.06 Aligned_cols=172 Identities=14% Similarity=0.179 Sum_probs=112.8
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc--ccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT--GSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~--~ti 476 (1198)
+.+++++++.+++|+.++|+||||||||||+++|+|+++|.+|.|.++|.+--..+. +..++++.|.+. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 346889999999999999999999999999999999999999999999865222221 345777877765 32 367
Q ss_pred HHHHhcC---CC------CCCHHHHHHHHHHhc-------------HHHHHHh---CCCCccchhc-------CCCCCCC
Q 000984 477 KDNIAYG---KD------DATTEEIRVATELAN-------------AAKFIDK---LPQGIDTLVG-------EHGTQLS 524 (1198)
Q Consensus 477 ~~Ni~~~---~~------~~~~~~~~~~~~~~~-------------~~~~i~~---l~~g~~t~v~-------~~g~~lS 524 (1198)
++++... .| +.++.+...+++... ..+.+.. .|.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7766422 12 344444444443321 1222222 2223332221 1233579
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-CCCeEEE--EecCcchhhc
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI--VAHRLSTVRN 586 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~--itH~~~~~~~ 586 (1198)
+|||||.++|.+ | ++++|++..+.+.+.+.++. .++|+++ +||.++.+..
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 999999887622 6 99999987665555554443 3678775 7999987753
No 192
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.14 E-value=1.2e-11 Score=138.78 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=69.2
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--Hhhcceeccccc-cc-c
Q 000984 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-N 1132 (1198)
Q Consensus 1061 L~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~-LF-~ 1132 (1198)
++++||++++|+.++||||+||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.+|++|+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 46789999999999999999999999999999999999999999999987653 3344 457999999997 65 5
Q ss_pred ccHHHHHhcC
Q 000984 1133 DTIRANIAYG 1142 (1198)
Q Consensus 1133 gTIreNI~~g 1142 (1198)
.|+++|+.++
T Consensus 170 ~~v~e~l~~~ 179 (302)
T 3b9q_A 170 TVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5899999753
No 193
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.14 E-value=2.9e-11 Score=137.39 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=81.5
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCeEEEC-CeecCCcCHHHHhcceEEEcCCCCCCc-ccHH
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLID-GINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~-g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1198)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|+++++. .+++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 56777775 4899999999999999999999999999 999999987 75432 134568999999998875 5899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 478 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
++-. ...+.+++... ..+.++.+ |+....+....++| ||+||++||+++
T Consensus 280 e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 8632 23344443321 12223333 44444566667899 999999999986
No 194
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=4.5e-12 Score=146.85 Aligned_cols=95 Identities=22% Similarity=0.244 Sum_probs=67.5
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~Gek--vaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
.+++++ +++|++ .+ |+|+||+|++|+. +|||||||||||||+++|+|+. ++|.++........|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 788853 35 9999999999999 9999999999999999999983 6677776655555677
Q ss_pred hcceeccccccc-cccHHHHHhcCCCCCCCHHH
Q 000984 1120 QMGLVSQEPVLF-NDTIRANIAYGKGGDATEAE 1151 (1198)
Q Consensus 1120 ~IsiV~Qdp~LF-~gTIreNI~~g~~~~~tdee 1151 (1198)
.+++|+|++.++ .-|+.||+.||. ..+.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~--~~~~~~ 113 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD--QINKED 113 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHH
T ss_pred eEEEEeecCccccccchhhhhhhhh--ccccch
Confidence 899999999887 569999999884 344443
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.13 E-value=2e-12 Score=141.57 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=104.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcC---
Q 000984 411 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG--- 483 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~--- 483 (1198)
++++++|+||+|||||||+++|. |+..|+.|+|.++|.+.. ..+...+.+++|++.++ ..++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988775432 12344567778887665 45888888641
Q ss_pred ----------CCCCCHHHHHHHHHHhcHHHHHHhCC-CC------------ccchhcCCCCCCChHHHHHHhHHHhh-cc
Q 000984 484 ----------KDDATTEEIRVATELANAAKFIDKLP-QG------------IDTLVGEHGTQLSGGQKQRIAIARAI-LK 539 (1198)
Q Consensus 484 ----------~~~~~~~~~~~~~~~~~~~~~i~~l~-~g------------~~t~v~~~g~~lSgGqkqri~lARal-~~ 539 (1198)
.+ .+.++... +..+. -+ ++-........||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 11211111 11111 01 11112344457898 55 888 99
Q ss_pred CCCEEEEe----CCCCCCCHHhHHHHHHHHHHHhCCC-eEEEEecCcchhhccCEEEEEeC
Q 000984 540 DPRILLLD----EATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHR 595 (1198)
Q Consensus 540 ~~~illlD----e~ts~lD~~~~~~i~~~i~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~ 595 (1198)
+|++++|| |||+++|..+...+.+.++.+.+.. ++ .......+++++++.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v------~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPV------IELYKSRGVLHQFSG 218 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHH------HHHHHHTTCEEEEEC
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHH------HHHHhhcCcEEEECC
Confidence 99999999 9999999999988888887754321 11 122333456777664
No 196
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.12 E-value=2.9e-12 Score=148.87 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=74.3
Q ss_pred cccccceEEeeCCC--------------------EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 000984 1059 QVFRDLNLKIRAGK--------------------TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1059 ~vL~~is~~I~~Ge--------------------kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
.+|+||||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998864 1
Q ss_pred hhcceeccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHH
Q 000984 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~d 1163 (1198)
.++|+|++...+-|++||+.++.. ++.+.++++..++.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYE 148 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGG
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCc
Confidence 288999986567899999987632 234566666666543
No 197
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.11 E-value=6e-11 Score=137.73 Aligned_cols=146 Identities=16% Similarity=0.246 Sum_probs=91.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCC-----eEEECCeec-CCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAG-----EVLIDGINL-KEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~--l~g~~~~~~G-----~i~i~g~~~-~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
-|++|++++|+||+|||||||++. +.+..++..| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4566665433 788888653 12223334455666554 56777
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh--ccCCCEEEEeCCCCCCCHHh
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES 557 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal--~~~~~illlDe~ts~lD~~~ 557 (1198)
+.+..+. +.+.... ++.-++++ -.+|+++++|||++.+|++.
T Consensus 247 i~~~~~~-~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7665432 2222211 11111111 14799999999999999753
Q ss_pred H------------HHHHHHHHHHh--CCCeEEEEecCcc-------------------hhhc-cCEEEEEeCC
Q 000984 558 E------------KVVQEALDRIM--VNRTTVIVAHRLS-------------------TVRN-ADMIAVIHRG 596 (1198)
Q Consensus 558 ~------------~~i~~~i~~~~--~~~t~i~itH~~~-------------------~~~~-~d~i~~l~~G 596 (1198)
. ..+.+.|+++. .+.|+|+|+|-.. .+.+ +|.++.|++|
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 2 33455555543 3789999999832 2333 7888888765
No 198
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.09 E-value=9.8e-11 Score=117.16 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=66.9
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--eEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
+|+++ +|+.++|+||+|||||||++++.+++.+ +| .+.+++.++.. .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------------~----- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------------T----- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------C-----
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------H-----
Confidence 45666 8999999999999999999999999876 46 44444422111 0
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1198)
+++.+|++|+||||++ +|....
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2356899999999998 655557
Q ss_pred HHHHHHHHHHh-CCCe-EEEEecC
Q 000984 559 KVVQEALDRIM-VNRT-TVIVAHR 580 (1198)
Q Consensus 559 ~~i~~~i~~~~-~~~t-~i~itH~ 580 (1198)
+.+.+.+.... ++++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 77777777654 3577 6777774
No 199
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=5.8e-11 Score=137.49 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-cCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHH
Q 000984 414 TAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEE 491 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g-~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~ 491 (1198)
.+.|+||+|+||||+++++.| ++.|..|.+.++|.+...... .+..+++++|.+++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 499999999999999999999 789999999999987654322 267899999988653 2110 010 11112
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCC
Q 000984 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571 (1198)
Q Consensus 492 ~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~ 571 (1198)
+.+..+. ..... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+++..++
T Consensus 109 ~~~~i~~-----~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKE-----VAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHH-----HTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHH-----HHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 2222211 11111 122111 4566 778999999999999 9999999999999887677
Q ss_pred CeEEEEecCcchh
Q 000984 572 RTTVIVAHRLSTV 584 (1198)
Q Consensus 572 ~t~i~itH~~~~~ 584 (1198)
+++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998754
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.09 E-value=4.5e-12 Score=134.20 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=51.4
Q ss_pred ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1058 ~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
..+|+|| ++||.+||+||+|||||||+++|.++ .|++|+|. +.++.. +...+|++|++|||++
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence 3589996 89999999999999999999999999 99999994 344432 3335688999999998
No 201
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.09 E-value=1.6e-10 Score=130.69 Aligned_cols=141 Identities=19% Similarity=0.166 Sum_probs=95.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHH----HHhc--ceEEEcCCCCCCc-ccHHHHHh
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ----WIRK--KIGLVSQEPVLFT-GSIKDNIA 481 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~----~~r~--~i~~v~Q~~~l~~-~ti~~Ni~ 481 (1198)
.++|++++|+|||||||||+++.|.|++.|.+|+|.++|.|+...... .+++ .+.+++|++.++. .++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998766532 2333 4559999988774 68999997
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCC--CCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhH
Q 000984 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1198)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~--~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1198)
++.. . +.+. .+...|. .-..=.++.-.++|++..++++++||.++. .|.
T Consensus 206 ~~~~-----------------~-------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~--- 257 (328)
T 3e70_C 206 HAKA-----------------R-------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAI--- 257 (328)
T ss_dssp HHHH-----------------H-------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THH---
T ss_pred HHHh-----------------c-------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHH---
Confidence 5310 0 1111 1111111 011123445568999998888888885554 222
Q ss_pred HHHHHHHHHHh--CCCeEEEEecC
Q 000984 559 KVVQEALDRIM--VNRTTVIVAHR 580 (1198)
Q Consensus 559 ~~i~~~i~~~~--~~~t~i~itH~ 580 (1198)
.+.++.+. .+.|.|++||-
T Consensus 258 ---~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 258 ---VEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ---HHHHHHHHHHSCCCEEEEECG
T ss_pred ---HHHHHHHHHhcCCCEEEEeCc
Confidence 22222222 37899999994
No 202
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.08 E-value=1.5e-11 Score=134.90 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=85.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh---cccCCCCCeEE--------ECCccc-CCCChHHHHhhcceecc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ---RFYDPDAGHIT--------LDGVEI-QKLQLKWLRQQMGLVSQ 1126 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~---R~ydp~~G~I~--------IDG~dI-~~i~l~~LR~~IsiV~Q 1126 (1198)
+++++.+ ++|++|||+|++||||||++++|. |++.|++|.|. .+|.++ ....+..+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 4555554 889999999999999999999999 99999999999 999999 56778999999999995
Q ss_pred c------cccccccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccccccee
Q 000984 1127 E------PVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1198)
Q Consensus 1127 d------p~LF~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v 1176 (1198)
+ .+++..++.+||+ .+++..++..+..++.|......+...+
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~~~~~ 142 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRRQRAF 142 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHHHHTT
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4 5688888888874 2467777888888888877666544433
No 203
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.08 E-value=2.8e-12 Score=146.48 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=76.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHHH
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~LR 1118 (1198)
|+.+|++++|. ...+|+++||++++|+.+||+|++|||||||++.|.+++.|++|+|.|.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 56678888884 235999999999999999999999999999999999999999999999999986543 23468
Q ss_pred hhcceecccccccc
Q 000984 1119 QQMGLVSQEPVLFN 1132 (1198)
Q Consensus 1119 ~~IsiV~Qdp~LF~ 1132 (1198)
+++++++|++.+|.
T Consensus 107 ~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 107 TRMARLAIDRNAFI 120 (337)
T ss_dssp GGSTTGGGCTTEEE
T ss_pred hhheeeccCccccc
Confidence 89999999999985
No 204
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.07 E-value=2.9e-11 Score=137.98 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=69.5
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--Hhhcceeccccc-cc-cc
Q 000984 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-ND 1133 (1198)
Q Consensus 1062 ~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~-LF-~g 1133 (1198)
+.+||++++|+.++|||++||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.+|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999987642 3334 568999999987 54 56
Q ss_pred cHHHHHhcC
Q 000984 1134 TIRANIAYG 1142 (1198)
Q Consensus 1134 TIreNI~~g 1142 (1198)
|+++||.++
T Consensus 228 tv~e~l~~~ 236 (359)
T 2og2_A 228 VLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 899999764
No 205
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.06 E-value=1.1e-11 Score=140.12 Aligned_cols=93 Identities=23% Similarity=0.366 Sum_probs=79.2
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEEe-------------------eCCCEEEEEcCCCCCHHHHHHHHhcccC--C
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKI-------------------RAGKTVALVGESGSGKSTVVSLLQRFYD--P 1097 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I-------------------~~GekvaIVG~SGSGKSTL~~lL~R~yd--p 1097 (1198)
.++.|+++||++.|. +++++|++.+ ++|+.+||+|++|||||||+++|.+++. |
T Consensus 34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 356799999999993 5999999998 8999999999999999999999999999 9
Q ss_pred CCCeEEE---CCcccCCCChHHHHhhcceeccccccc-cccHHHHHhc
Q 000984 1098 DAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1198)
Q Consensus 1098 ~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1198)
++|+|.+ ||.+.. ...|+.+++| |+.-++ .-|+.+|+.+
T Consensus 109 ~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 109 EHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp TCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 9999999 998853 3467889999 766553 4478888764
No 206
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.06 E-value=3.8e-11 Score=140.54 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=69.9
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHH--HHhhcceeccccccc-ccc
Q 000984 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKW--LRQQMGLVSQEPVLF-NDT 1134 (1198)
Q Consensus 1062 ~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~--LR~~IsiV~Qdp~LF-~gT 1134 (1198)
+++||++++|+.++|||++||||||+++.|.+++.+++|+|.++|.|+.... +.. .|++|++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999998875431 223 478899999998754 679
Q ss_pred HHHHHhcC
Q 000984 1135 IRANIAYG 1142 (1198)
Q Consensus 1135 IreNI~~g 1142 (1198)
+++||.++
T Consensus 364 V~e~l~~a 371 (503)
T 2yhs_A 364 IFDAIQAA 371 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 207
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.04 E-value=1.7e-11 Score=130.50 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=67.7
Q ss_pred ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHH
Q 000984 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIR 1136 (1198)
Q Consensus 1058 ~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIr 1136 (1198)
.+||+| .+|++||.+||+||||||||||+++|.++++ .|.+++.....-+....|+.+++++|++.+|.. |++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 368999 7999999999999999999999999999985 455654222111112346789999999988753 455
Q ss_pred HHHhc-----C--CCCCCCHHHHHHH----------HHHcchHHHHHhccccccceeeeeecc
Q 000984 1137 ANIAY-----G--KGGDATEAEIQAA----------SEMANAHKFICSLQQVRTSRLLLVMIP 1182 (1198)
Q Consensus 1137 eNI~~-----g--~~~~~tdeei~~A----------l~~A~l~dfI~~LP~g~dt~v~~~~~~ 1182 (1198)
+|+.. + .....+.+++.+. ++..++.++-...|..+- ++++-|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS---~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT---VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE---EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE---EEEECC
Confidence 55421 1 0001233444443 345577777777776553 555544
No 208
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=7.9e-11 Score=132.60 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=73.0
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHHhhcceeccccc-------------
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPV------------- 1129 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~------------- 1129 (1198)
|++.+|+.++|+||||||||||+++|.++..|++|+|.+ +|.++........++++++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9999876542221247999999985
Q ss_pred ---cc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcch-HHHHHhccccc
Q 000984 1130 ---LF-NDTIRANIAYGKGG--DATEAEIQAASEMANA-HKFICSLQQVR 1172 (1198)
Q Consensus 1130 ---LF-~gTIreNI~~g~~~--~~tdeei~~Al~~A~l-~dfI~~LP~g~ 1172 (1198)
|| +-|+ +|++|+... ...++.+.++++..++ .+...+.|..+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 292 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMF 292 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34 3377 999885221 1234579999999999 47777777654
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.99 E-value=2.2e-10 Score=118.83 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=74.1
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~ 485 (1198)
++.+++|+.++|+||+|||||||++++.+.+.|..|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 46678899999999999999999999999987666631 1111 111111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC-CCCHHhHHHHHHH
Q 000984 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEA 564 (1198)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~ 564 (1198)
.... ..... + . .. -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 80 --------~~~~-----~~~~~---~--------~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 80 --------FRLK-----HLMDE---G--------K--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp --------HHHH-----HHHHH---T--------C--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred --------HHHH-----HHhcC---c--------h--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 1000 00000 0 0 00 0112245899999999996 8999988888888
Q ss_pred HHHHh-CCCeEEEEecCcc
Q 000984 565 LDRIM-VNRTTVIVAHRLS 582 (1198)
Q Consensus 565 i~~~~-~~~t~i~itH~~~ 582 (1198)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87665 6789999999864
No 210
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.99 E-value=1e-10 Score=127.79 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=51.0
Q ss_pred CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHH
Q 000984 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136 (1198)
Q Consensus 1057 ~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIr 1136 (1198)
+.++|+|+||++++|+.+||+||+||||||++++|.+++ |.+.+| ..++++++|+||++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 446999999999999999999999999999999999977 777665 367889999999855456899
Q ss_pred HHHhc
Q 000984 1137 ANIAY 1141 (1198)
Q Consensus 1137 eNI~~ 1141 (1198)
+|+++
T Consensus 77 ~~~~~ 81 (245)
T 2jeo_A 77 QKAKA 81 (245)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 99864
No 211
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.97 E-value=1.1e-11 Score=140.13 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=96.9
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEE-------------------eCCCEEEEEcCCCCcHHHHHHHHhccCC--CC
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISI-------------------SSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~~GsGKStl~~~l~g~~~--~~ 439 (1198)
.+.|+++||++.|. ++++++++.+ ++|+++||+|++|||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35689999999992 5899999988 8999999999999999999999999998 99
Q ss_pred CCeEEE---CCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccch
Q 000984 440 AGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1198)
Q Consensus 440 ~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 515 (1198)
+|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+.. .+..|.. .
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------------------~l~~~~~-~ 161 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS----------------------DLKSGVP-N 161 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------------------HHTTTCS-C
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH----------------------HHhCCCC-c
Confidence 999999 987642 2345678888 766543 346766665321 0111111 0
Q ss_pred hcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 516 v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
+.-.-.+.+.+ +|+..+.+...+++++|+|.|....|.
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 10001112222 344444456678999999999987774
No 212
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.96 E-value=1.5e-12 Score=144.61 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=94.8
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC-CCC-cccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLF-TGSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~-~~ti 476 (1198)
+.+++++++++++| ++|+||+|||||||+++|.|++.+ |.|.++|.++.+......++++++++|++ ..+ .-++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 34789999999999 999999999999999999999877 79999998887666666677899999986 333 3466
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC
Q 000984 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1198)
Q Consensus 477 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1198)
.||+....+.....+.. . ....+.+....|||||+||..+++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~~~~~-------------~----~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 109 FDEVDALCPRRSDRETG-------------A----SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eehhhhhhcccCCCcch-------------H----HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 77877543321111000 0 001111122358999999999999999999975 99875
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.95 E-value=4.6e-11 Score=134.43 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=74.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE---CCeecCCcCHHHHh-cceEEEcCCCCCC------cccHH
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIR-KKIGLVSQEPVLF------TGSIK 477 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r-~~i~~v~Q~~~l~------~~ti~ 477 (1198)
.+.+|++++++||||||||||+++|. +.+|..|+|.+ +|.++..... ..+ ..++|++|+|.+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9988765432 222 3699999999653 4578
Q ss_pred HHH--hcC--------CCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHH
Q 000984 478 DNI--AYG--------KDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1198)
Q Consensus 478 ~Ni--~~~--------~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lAR 535 (1198)
+|+ .|+ ... .....+.++++..++.+. ........|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCE----------RYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------HHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 888 443 000 112334444444443221 222223468998888999998
No 214
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.95 E-value=4.8e-10 Score=125.69 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--Hhhcceecccccccc-ccHHHHHhc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPVLFN-DTIRANIAY 1141 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~LF~-gTIreNI~~ 1141 (1198)
+|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.++++|+|++.++. .|+++|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999997654 2333 467999999998775 478899864
No 215
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.91 E-value=5.4e-11 Score=146.57 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=60.1
Q ss_pred cEEEeeeeEECCCCCCccccccc----------eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEEECCcccC
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDL----------NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHITLDGVEIQ 1110 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~i----------s~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I~IDG~dI~ 1110 (1198)
.|+++|+++.|+.. ..++|+.+ +++++. +||||++|||||||+++|.|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48999999999632 22455544 377765 999999999999999999999989 7999999999963
Q ss_pred CC---ChHHHHhhcceeccccccc-cccHHHHHhc
Q 000984 1111 KL---QLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1198)
Q Consensus 1111 ~i---~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1198)
.. ....+|++|++|+|++.+| ..|+++||.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 22 2457889999999999876 4589999864
No 216
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.90 E-value=4.7e-10 Score=132.23 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=64.7
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH-------
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW------- 1116 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~------- 1116 (1198)
.+.++++.+ ..+|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~ 81 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYG 81 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGG
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHH
Confidence 455665533 1389999999999 999999999999999999999999999999999999998765432
Q ss_pred -HHhhcceeccccc
Q 000984 1117 -LRQQMGLVSQEPV 1129 (1198)
Q Consensus 1117 -LR~~IsiV~Qdp~ 1129 (1198)
++..+.++.+++.
T Consensus 82 ~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 82 KLKAGVCYAVLETV 95 (483)
T ss_dssp GSCSSEEEEEEEEE
T ss_pred hcCCCceEEEEehh
Confidence 2334567777754
No 217
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.85 E-value=6.9e-12 Score=135.96 Aligned_cols=37 Identities=30% Similarity=0.227 Sum_probs=22.9
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccC
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY 436 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~ 436 (1198)
...+++||++++|++++|+||||||||||+++|. |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
No 218
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.84 E-value=5.9e-10 Score=118.77 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=60.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc---cHHHHHhc--
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND---TIRANIAY-- 1141 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g---TIreNI~~-- 1141 (1198)
..++|+.+||+|++|||||||+++|.+++.| ++++|+||+++|+. |+++|+.+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3579999999999999999999999999875 68999999999854 56666554
Q ss_pred CCCCCCCHHHHHHHHHHcchHHHHHh
Q 000984 1142 GKGGDATEAEIQAASEMANAHKFICS 1167 (1198)
Q Consensus 1142 g~~~~~tdeei~~Al~~A~l~dfI~~ 1167 (1198)
+.+.....+.+.++++..++.+++..
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 32223456778888888877766544
No 219
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.84 E-value=9.2e-10 Score=114.46 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=68.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHhhcceeccccccccc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND 1133 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~yd-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g 1133 (1198)
...+|+.++|+||||||||||+++|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+|+.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 345899999999999999999999999986 67887 899999999999999876 699999999
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHH
Q 000984 1134 TIRANIAYGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1134 TIreNI~~g~~~~~tdeei~~Al~ 1157 (1198)
++.+|. ||. +.+.+.++++
T Consensus 90 ~~~~n~-YGt----~~~~v~~~l~ 108 (197)
T 3ney_A 90 SYQGNM-FGT----KFETVHQIHK 108 (197)
T ss_dssp EETTEE-EEE----EHHHHHHHHH
T ss_pred hhhcee-ccc----chhhHHHHHh
Confidence 999995 883 3444555444
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.84 E-value=8.5e-10 Score=124.09 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=70.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHH-hhcceecccccc------ccccHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLR-QQMGLVSQEPVL------FNDTIR 1136 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I---DG~dI~~i~l~~LR-~~IsiV~Qdp~L------F~gTIr 1136 (1198)
++.+|++++|+|+||||||||+++|. +..|.+|+|.+ +|.++..... ..+ +++++|+|+|-+ .+-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9999876542 223 479999999954 24578
Q ss_pred HHH--hcC----------C--CCCCCHHHHHHHHHHcchHH-HHHhcccc
Q 000984 1137 ANI--AYG----------K--GGDATEAEIQAASEMANAHK-FICSLQQV 1171 (1198)
Q Consensus 1137 eNI--~~g----------~--~~~~tdeei~~Al~~A~l~d-fI~~LP~g 1171 (1198)
+|+ .++ . ......+.+.+|++..++.+ ...+.|.-
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 287 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKI 287 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 888 443 0 11122456899999998875 55554443
No 221
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.83 E-value=6.9e-10 Score=129.33 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=90.0
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHh
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~ 481 (1198)
-++++|+++.|+.++|+|++|||||||+++|.+..+ .+.+.+...+ ...++++.|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 3344333322 335677776541 1112222211
Q ss_pred cCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH
Q 000984 482 YGK-----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 482 ~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1198)
+.. ........ +..+.+. ..+..+ +.. .+...+||+||+||.++||++..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl-~~~era~--~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFL-RHIARTR--VLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHH-HHHTSSS--EEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHH-HHHHHHH--hhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 100 00111111 1111110 001000 100 122246999999999999999999999999 999987
Q ss_pred hHHHHHHHHHHHh--CCCeEEEEec
Q 000984 557 SEKVVQEALDRIM--VNRTTVIVAH 579 (1198)
Q Consensus 557 ~~~~i~~~i~~~~--~~~t~i~itH 579 (1198)
....+ +.+.+.. .+.+++.+|.
T Consensus 283 ~~~~~-~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAV-KALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHH-HHHHHHHHTTTSCEEECCT
T ss_pred hHHHH-HHHHHHHHhcCCeEEEEEC
Confidence 65333 3333332 2457776664
No 222
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.82 E-value=3.4e-10 Score=122.14 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccc---CCCCCeEEE--------CCcccC-CCChHHHHhhcceecccc------cccc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFY---DPDAGHITL--------DGVEIQ-KLQLKWLRQQMGLVSQEP------VLFN 1132 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~y---dp~~G~I~I--------DG~dI~-~i~l~~LR~~IsiV~Qdp------~LF~ 1132 (1198)
+.++||+|++||||||++++|.+.| .++.|.|.. +|.|+. +..+.++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999887 778999988 788876 367788999999999987 6677
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1133 DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1133 gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
.++.+|+ .++++..++..+.+|++|...+.++.+.
T Consensus 85 ~~v~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 119 (227)
T 1cke_A 85 EDVSGEI--------RTQEVANAASQVAAFPRVREALLRRQRA 119 (227)
T ss_dssp EECHHHH--------TSHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred eeCchhh--------CCHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7788876 2568999999999999999887766443
No 223
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.82 E-value=3.1e-10 Score=132.45 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=92.7
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----CChHHHH
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKWLR 1118 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~----i~l~~LR 1118 (1198)
++++|++|.|. ...+|+++ +. ++|+.++|+|||||||||++++|++++.|++|+|.++|.++.. ++...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45666666663 23478888 53 8999999999999999999999999999999999999988732 1123455
Q ss_pred hhcceec---------cccccc--c-----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcchHH--HHHhccccc
Q 000984 1119 QQMGLVS---------QEPVLF--N-----DTIRANIAYGKG--------GDATEAEIQAASEMANAHK--FICSLQQVR 1172 (1198)
Q Consensus 1119 ~~IsiV~---------Qdp~LF--~-----gTIreNI~~g~~--------~~~tdeei~~Al~~A~l~d--fI~~LP~g~ 1172 (1198)
+++++++ |||.++ . -|+++|+.++.. +..+..+..+.++..++.+ ....|..|.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~ 298 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVL 298 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEE
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6676655 999763 2 389999876311 1112234555566666554 345677777
Q ss_pred cceeeeeec
Q 000984 1173 TSRLLLVMI 1181 (1198)
Q Consensus 1173 dt~v~~~~~ 1181 (1198)
.-+++-.+.
T Consensus 299 ~QRLaraL~ 307 (418)
T 1p9r_A 299 AQRLVRTLC 307 (418)
T ss_dssp EEEEEEEEC
T ss_pred HHHhhhhhc
Confidence 777666554
No 224
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.81 E-value=8.1e-10 Score=126.10 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=59.6
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
-++.+||++.|.. +..||+++ |+|.+||++||+|++|||||||+++|.|+.+|+.|.|.++|.+.
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH
Confidence 4889999999963 34699999 99999999999999999999999999999999999999999763
No 225
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.81 E-value=3.8e-10 Score=120.46 Aligned_cols=89 Identities=10% Similarity=0.020 Sum_probs=67.0
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHhhcceecccccccccc-H----HHH
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT-I----RAN 1138 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT-I----reN 1138 (1198)
-+.++|+.++|+||||||||||+++|.++++| ..|+|.++|.+.+. ..++.++|+||++.+|... . .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46799999999999999999999999999986 68999999987653 2467899999999999764 4 588
Q ss_pred HhcCCC-CCCCHHHHHHHHHH
Q 000984 1139 IAYGKG-GDATEAEIQAASEM 1158 (1198)
Q Consensus 1139 I~~g~~-~~~tdeei~~Al~~ 1158 (1198)
+.+... -..+.+++.++++.
T Consensus 87 ~~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 87 AEVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EEETTEEEEEEHHHHHHHHTT
T ss_pred HHHHhccCCCCHHHHHHHHhc
Confidence 875311 01245667777653
No 226
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.80 E-value=1.4e-09 Score=112.70 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=65.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEE----------ECCcccCCCChHHHHhhcceeccccccccccHHH
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I~----------IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1198)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||+|+..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 345553 58999988999999875 67999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 000984 1138 NIAYGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1138 NI~~g~~~~~tdeei~~Al~ 1157 (1198)
| .||. +.+++.++++
T Consensus 80 n-~yg~----~~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGT----KLETIRKIHE 94 (180)
T ss_dssp E-EEEE----EHHHHHHHHH
T ss_pred c-cccc----cHHHHHHHHH
Confidence 9 5763 3555666665
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.77 E-value=2.4e-09 Score=121.04 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=65.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHHHhhcc--eeccccccc-cccHHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQQMG--LVSQEPVLF-NDTIRANI 1139 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l----~~LR~~Is--iV~Qdp~LF-~gTIreNI 1139 (1198)
..++|+.++||||+||||||+++.|.+++.|++|+|.++|.|+..... ..++++++ +++|++.++ ..|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999987663 34566666 899998877 45899999
Q ss_pred hcC
Q 000984 1140 AYG 1142 (1198)
Q Consensus 1140 ~~g 1142 (1198)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 228
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.77 E-value=1.8e-09 Score=127.74 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=69.6
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC--------------------------------------CCCCe
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--------------------------------------PDAGH 1101 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd--------------------------------------p~~G~ 1101 (1198)
+|+++||++++| .++|||+||||||||+++|..+.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999965543 45789
Q ss_pred EEECCcccCCCChHHHHhh-cceeccccccccccHHHHHhc
Q 000984 1102 ITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFNDTIRANIAY 1141 (1198)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~-IsiV~Qdp~LF~gTIreNI~~ 1141 (1198)
|++||.+++..++.++++. +++++|++.++-++-.++..+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ 169 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGL 169 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHH
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHH
Confidence 9999999988788888887 799999998887776655543
No 229
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=1e-09 Score=128.00 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=56.8
Q ss_pred ccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+|+||+++|+. .++|+|+||+| +|||+||||||||++.|++...+..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 56999999999963 36999999998 99999999999999999999876555 2454443211 112467
Q ss_pred cceeccccccc-cccHHHHHhcCC
Q 000984 1121 MGLVSQEPVLF-NDTIRANIAYGK 1143 (1198)
Q Consensus 1121 IsiV~Qdp~LF-~gTIreNI~~g~ 1143 (1198)
+++++|++.++ .-||.||+.++.
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EECC------CEEEEEEECC----
T ss_pred EEEEEecCCcccceeeeechhhhh
Confidence 89999998876 679999998874
No 230
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.77 E-value=1e-09 Score=123.58 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=65.9
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE---CCeecCCcCHHHHhcceEEEcCCCCC------------
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVL------------ 471 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l------------ 471 (1198)
|++.+|++++|+||||||||||+++|.|+..|+.|+|.+ +|.++.........+.+++++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 89887654421112369999999953
Q ss_pred ----C-cccHHHHHhcCCC---CCCHHHHHHHHHHhcH-HHHHHhCC
Q 000984 472 ----F-TGSIKDNIAYGKD---DATTEEIRVATELANA-AKFIDKLP 509 (1198)
Q Consensus 472 ----~-~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~-~~~i~~l~ 509 (1198)
| .-|+ +|+.|+.. .....++.++++..++ .+...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4 3477 88887531 1223567778887777 34444444
No 231
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.76 E-value=6.6e-10 Score=118.17 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=54.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCCCeEEE-------CCcccC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITL-------DGVEIQ 1110 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~y-----dp~~G~I~I-------DG~dI~ 1110 (1198)
|+++|++|+|+ .++|++ |.+++|++++|||++|||||||++.|.+.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258988 999999999999999999999999999988 788888765 333332
Q ss_pred CCC-----------hHHHHhhcceeccccccccc-cHHHHH
Q 000984 1111 KLQ-----------LKWLRQQMGLVSQEPVLFND-TIRANI 1139 (1198)
Q Consensus 1111 ~i~-----------l~~LR~~IsiV~Qdp~LF~g-TIreNI 1139 (1198)
+.+ .+.+|+.++.+.|+...+++ ++..|+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 118 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDI 118 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEEC
Confidence 221 24567777777776544433 333444
No 232
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.75 E-value=2e-10 Score=123.90 Aligned_cols=127 Identities=15% Similarity=0.185 Sum_probs=97.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC---CCCCCeEEE--------CCeecC-CcCHHHHhcceEEEcCCC------CCCc
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLI--------DGINLK-EFQLQWIRKKIGLVSQEP------VLFT 473 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~---~~~~G~i~i--------~g~~~~-~~~~~~~r~~i~~v~Q~~------~l~~ 473 (1198)
+.+++|+|++||||||+++.|.+.+ .++.|.+.. +|.++. +....++++++++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 677888877 677765 355677889999999987 4456
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC
Q 000984 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v-~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1198)
.++.+++. ++++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++|+.++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 67777763 4567777777777777776655555554 3456677887 5677888999999998874
No 233
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.75 E-value=3.2e-09 Score=125.16 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=55.2
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcC
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1198)
.+.++++.. ..+|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 345555432 2379999999999 999999999999999999999999999999999999887554
No 234
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.74 E-value=2.2e-09 Score=116.19 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=49.8
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh-ccc------------CCCCCeEEECCcccCCCChHHHHhhcceec
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ-RFY------------DPDAGHITLDGVEIQKLQLKWLRQQMGLVS 1125 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~-R~y------------dp~~G~I~IDG~dI~~i~l~~LR~~IsiV~ 1125 (1198)
.-.+++||++++|+.+||+||||||||||+++|. +++ +|..|.+ +|+++...+...++.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 3689999999999999999999999999999999 999 7777765 7777766666666543 34
Q ss_pred cccccccccHHHHHhcC
Q 000984 1126 QEPVLFNDTIRANIAYG 1142 (1198)
Q Consensus 1126 Qdp~LF~gTIreNI~~g 1142 (1198)
++.+++.+++..|+ ||
T Consensus 90 ~~~~~~~~~~~~~~-~~ 105 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YG 105 (231)
T ss_dssp TTCEEEEEEETTEE-EE
T ss_pred cCceehhhhhcccc-CC
Confidence 66677666776665 55
No 235
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.74 E-value=2.9e-09 Score=112.70 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=57.9
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHHHHH
Q 000984 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI 1139 (1198)
Q Consensus 1065 s~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI 1139 (1198)
|+++++|+.+||+||||||||||+++|.+++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 6788999999999999999999999999997 3 699999999887777778899999999988865 344444
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.74 E-value=3.4e-10 Score=128.63 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=64.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCCeEEEC-CcccCCCChHHHHhhcceeccccccccc-cHH
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-PDAGHITLD-GVEIQKLQLKWLRQQMGLVSQEPVLFND-TIR 1136 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd-p~~G~I~ID-G~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIr 1136 (1198)
.++++++. .+|+++||+|+||||||||+++|.++.. |..|.|.++ |.+.. ...++.++++||++.|++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47777775 4899999999999999999999999999 999999997 87653 2456789999999998865 798
Q ss_pred HHHhcCCCCCCCHHHHH----HHHHHcchHHH
Q 000984 1137 ANIAYGKGGDATEAEIQ----AASEMANAHKF 1164 (1198)
Q Consensus 1137 eNI~~g~~~~~tdeei~----~Al~~A~l~df 1164 (1198)
++-.. ..+.+++. ++++.+++.+|
T Consensus 280 e~~l~----~l~~~e~~~~~~e~l~~~gl~~f 307 (358)
T 2rcn_A 280 EFGLW----HLEPEQITQGFVEFHDYLGHCKY 307 (358)
T ss_dssp TCCCC----CCCHHHHHHTSGGGGGGTTCSSS
T ss_pred Hhhhc----CCCHHHHHHHHHHHHHHcCCchh
Confidence 86322 34555543 33444444443
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.72 E-value=2.1e-08 Score=112.10 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=88.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceE
Q 000984 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1198)
Q Consensus 384 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1198)
+.++++++.|+.. . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 3445566666421 1 677887 8999999999999999999999999999899998877665321111
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCE
Q 000984 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1198)
Q Consensus 464 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~i 543 (1198)
+ +.....+. . |++-... +..-...+-+|.+|+++...++|+
T Consensus 143 --------------~------------ql~~~~~~-------~----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------E------------QLRLLGEK-------V----GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------H------------HHHHHHHH-------H----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------H------------HHHHhccc-------C----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 0 00000010 0 2221111 112344556789999998899999
Q ss_pred EEEeCC-CCCCCHHhHHHHHHHHHHH
Q 000984 544 LLLDEA-TSALDAESEKVVQEALDRI 568 (1198)
Q Consensus 544 lllDe~-ts~lD~~~~~~i~~~i~~~ 568 (1198)
+|+|+| ++++|......+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999987766666555443
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.72 E-value=2.8e-09 Score=111.55 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=56.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~ 1141 (1198)
.+++|+.++|+|++||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. .+.|+++|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 678999999988754321 1345789999876 56688888754
No 239
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.71 E-value=6.6e-10 Score=123.76 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=61.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCC--
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD-- 1146 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~-- 1146 (1198)
+++..|||+|+||||||||+++|.+++.+. | . . |+.+.+|+||+++|++++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 356899999999999999999999999874 2 1 1 45666779999999999999998752100
Q ss_pred CCHHHHHHHHHHcchHHHHHhccccccce
Q 000984 1147 ATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1198)
Q Consensus 1147 ~tdeei~~Al~~A~l~dfI~~LP~g~dt~ 1175 (1198)
.+....-++.+.+.+.+++..|++|++|.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~ 121 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHP 121 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC-----
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccc
Confidence 00000112233445778999999998764
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.70 E-value=8e-09 Score=115.64 Aligned_cols=97 Identities=15% Similarity=0.372 Sum_probs=70.1
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~ 485 (1198)
++..++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|... ....++
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH------
Confidence 44567899999999999999999999999999888888887655321 011111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH---hHHHhhccCCCEEEEeCCCC
Q 000984 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI---AIARAILKDPRILLLDEATS 551 (1198)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri---~lARal~~~~~illlDe~ts 551 (1198)
+...++ .+ |++. + ...|||+.|++ +|+||+.++++++|+|+|..
T Consensus 151 ------L~~~~~---------~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 ------LKIWGE---------RV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------HHHHHH---------HH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------HHHHHH---------Hc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 111111 11 2222 1 24589999999 99999999999999999974
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.69 E-value=2.3e-09 Score=119.61 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=57.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHHhhcceecccccccc-----ccHHH
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLFN-----DTIRA 1137 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~LF~-----gTIre 1137 (1198)
+++.+|++++|+|+||+|||||+++|.++..|..|+|.+ +|.++.... +..+..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 345689999999999999999999999999999999999 898886532 222223899999997654 477 8
Q ss_pred HHh--cC-------------C-CCCCCHHHHHHHHHHcchHHH
Q 000984 1138 NIA--YG-------------K-GGDATEAEIQAASEMANAHKF 1164 (1198)
Q Consensus 1138 NI~--~g-------------~-~~~~tdeei~~Al~~A~l~df 1164 (1198)
||. |. . .....+..+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 0 011223568889988888653
No 242
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.69 E-value=4.5e-09 Score=120.56 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=79.3
Q ss_pred ccccc-eEEeeCCCEEEEEcCCCCCHHHHHHHHhccc--CCCC----Ce-EEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1060 VFRDL-NLKIRAGKTVALVGESGSGKSTVVSLLQRFY--DPDA----GH-ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1060 vL~~i-s~~I~~GekvaIVG~SGSGKSTL~~lL~R~y--dp~~----G~-I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
.|+++ ++.|++|+.++|+||+|||||||++.|++.+ +|++ |+ |+|||.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46655 5899999999999999999999999999998 6665 68 999998762 367899999999999
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcchHHHHHhcccc
Q 000984 1132 NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQV 1171 (1198)
Q Consensus 1132 ~gTIreNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g 1171 (1198)
..++.+||.+.. ..+.++..+.++. +..++.++..|
T Consensus 193 ~~~v~~ni~~~~--~~~~~~~~~~l~~--~~~~~~~lS~G 228 (349)
T 1pzn_A 193 PDEVLKHIYVAR--AFNSNHQMLLVQQ--AEDKIKELLNT 228 (349)
T ss_dssp HHHHGGGEEEEE--CCSHHHHHHHHHH--HHHHHHHSSSS
T ss_pred HHHHhhCEEEEe--cCChHHHHHHHHH--HHHHHHHhccc
Confidence 999999999863 2333444454443 35566665444
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.69 E-value=1.9e-08 Score=112.41 Aligned_cols=138 Identities=12% Similarity=0.160 Sum_probs=89.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCH
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~ 489 (1198)
++|+.++++|++||||||++..|.+.+.+.+|. ++.++.+|++ ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------------------~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------------------KIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------CEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------EEEEEecCcc--cchHHHHHHH-------
Confidence 478999999999999999999999999887772 5777888873 3333333321
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
..+.. |...... ..++..+.+|+++ ++++++|+| |+++|+.....+.+..+-..
T Consensus 156 -----~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11100 1111111 1234567788875 899999999 99999877666654433221
Q ss_pred ---CCCeEEEE--ecCcchhhc-cCEEEEEeCCEEEE
Q 000984 570 ---VNRTTVIV--AHRLSTVRN-ADMIAVIHRGKIVE 600 (1198)
Q Consensus 570 ---~~~t~i~i--tH~~~~~~~-~d~i~~l~~G~i~~ 600 (1198)
.+.+++++ +|..+.+.. +|++..++.+.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22345555 788776654 66665566666664
No 244
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.68 E-value=5.8e-09 Score=125.13 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=74.1
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc--cHH
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND--TIR 1136 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g--TIr 1136 (1198)
.+++++++.+++|+.++|+|||||||||++++|+++++|++|.|.|+|.+--.++. ++.++++.|+++ ..+ |++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999876323221 456777888766 332 666
Q ss_pred HHHhcCC---C-----CCCCHHHHHHHHHHcc
Q 000984 1137 ANIAYGK---G-----GDATEAEIQAASEMAN 1160 (1198)
Q Consensus 1137 eNI~~g~---~-----~~~tdeei~~Al~~A~ 1160 (1198)
++++... | ++.+++|...+++.++
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~ 355 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMS 355 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhc
Confidence 6654221 1 2566777777666553
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=1.5e-09 Score=121.20 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=44.6
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE---CCeecCCcCHHHHhcceEEEcCCCCCCc-----ccHHH
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLFT-----GSIKD 478 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~~ 478 (1198)
+++.+|++++|+||||||||||+++|.|+..|..|+|.+ +|.++.... ...+..++|++|+|-+.. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999998 887765432 122223899999997653 478 9
Q ss_pred HHh
Q 000984 479 NIA 481 (1198)
Q Consensus 479 Ni~ 481 (1198)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
No 246
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.63 E-value=2e-09 Score=118.05 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=63.7
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCCeEE--------ECCeecC-CcCHHHHhcceEEEcCC
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGINLK-EFQLQWIRKKIGLVSQE 468 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~--------i~g~~~~-~~~~~~~r~~i~~v~Q~ 468 (1198)
++++.+ ++|++++|+||+||||||++++|. |+..++.|.+. .+|.++. ......+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999998 9999884 55688899999999965
Q ss_pred C------CCCcccHHHHHh
Q 000984 469 P------VLFTGSIKDNIA 481 (1198)
Q Consensus 469 ~------~l~~~ti~~Ni~ 481 (1198)
+ +++..++.+||.
T Consensus 96 ~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp ETTEEEEEETTEECTTGGG
T ss_pred CCCCceEEECCeehhHHHH
Confidence 3 566778888865
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.62 E-value=3.2e-09 Score=112.84 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=46.7
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHh
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1198)
.++|+++||+||||||||||+++|.++++|. | ..+++|+||.+.|+++.++|+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~ 72 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRG 72 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhc
Confidence 5789999999999999999999999999976 5 3568888888888888887763
No 248
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.61 E-value=3.3e-10 Score=129.78 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=92.8
Q ss_pred CccccceeEEEeCC-------CEEEEEcCCCCcHHHHHHHHhccC----CCCCCeEEECCeecCCcCHHHHhcceEEEcC
Q 000984 399 EQIFSGFSISISSG-------TTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g-------~~~~ivG~~GsGKStl~~~l~g~~----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 467 (1198)
..+++++++.+++| +.++|+||+|||||||+++|.|++ .+.+|.+..++.++..+-....+..|.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35899999999877 899999999999999999999998 6677877766655433211111457999999
Q ss_pred CCCCCcccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 468 EPVLFTGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 468 ~~~l~~~ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
.+.+.. ++.|++........ ..... +. +...+.. -++.. .......||+|+|||++++
T Consensus 111 ~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~~--~~li~-at~~~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQP--FTLVG-ATTRSGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH-HHHHHHHHHHHTSCCCC--------------------CC--CEEEE-EESCGGGSCHHHHTTCSEE-------
T ss_pred hhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCCC--eEEEE-ecCCcccCCHHHHHhcCce-------
Confidence 887765 78887742111110 00000 00 0111111 12211 2233457999999998755
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 542 RILLLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
.+||+.+...+.+.+++..
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHH
Confidence 6788877777777776543
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.61 E-value=1.8e-10 Score=128.53 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=89.6
Q ss_pred EEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEE
Q 000984 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1198)
Q Consensus 386 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1198)
++++...|. .+.+++++++++++| ++|+||+|||||||+++|.++.. .|.|.++|.++.+......+++++++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 445555553 245899999999999 99999999999999999999885 79999998776554444455668888
Q ss_pred cCCCC-CC-cccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhh
Q 000984 466 SQEPV-LF-TGSIKDNIA-YGKDDAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1198)
Q Consensus 466 ~Q~~~-l~-~~ti~~Ni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal 537 (1198)
+|++. .+ .-++.||+. ++..... .++..+ .+..+ + ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~---------~~~~l-------l----~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQL-------L----VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHH---------HHHHH-------H----HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH---------HHHHH-------H----HHHhCCCCCCCEEEEEe
Confidence 88763 33 345667773 3221110 011111 11111 1 13789999999999999
Q ss_pred ccCCCE
Q 000984 538 LKDPRI 543 (1198)
Q Consensus 538 ~~~~~i 543 (1198)
..+|++
T Consensus 185 t~~p~~ 190 (278)
T 1iy2_A 185 TNRPDI 190 (278)
T ss_dssp ESCTTS
T ss_pred cCCchh
Confidence 999876
No 250
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.59 E-value=1.7e-08 Score=108.93 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=66.9
Q ss_pred EeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-------CCCeEEECCcccCCCChHHH
Q 000984 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-------DAGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1045 f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp-------~~G~I~IDG~dI~~i~l~~L 1117 (1198)
++++++.++.- + .+|.+ -|++||.++|+||||||||||++.|.+.+.+ ..|.|++++.+. ..
T Consensus 4 ~~~i~tG~~~L-D-~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~---- 72 (231)
T 4a74_A 4 IGRISTGSKSL-D-KLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR---- 72 (231)
T ss_dssp CCEECCSCHHH-H-HHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----
T ss_pred CCccCCCChhH-H-hHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----
Confidence 45566666421 1 24544 6999999999999999999999999997666 455888988763 11
Q ss_pred HhhcceeccccccccccHHHHHhcCC
Q 000984 1118 RQQMGLVSQEPVLFNDTIRANIAYGK 1143 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~ 1143 (1198)
+++++.++|+..++..|+.+|+.+..
T Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
T 4a74_A 73 PERIREIAQNRGLDPDEVLKHIYVAR 98 (231)
T ss_dssp HHHHHHHHHHTTSCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHcCCCHHHHhhcEEEEe
Confidence 35678888988888889999998863
No 251
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.59 E-value=4.4e-09 Score=109.39 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
|++++|+||+|||||||+++|.++++ ++| |.+||.++.++ ..+|+++++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 78999999999999999999999999 999 99999998654 45799999999984
No 252
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.58 E-value=1.6e-09 Score=115.63 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=53.0
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC--------
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-------- 1113 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~-------- 1113 (1198)
.|+++|+...|. . +|++++ +.++|+||||||||||+++|.+++.|++|.|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488999876552 1 466666 899999999999999999999999999999999999984433
Q ss_pred hHHHHhhcceeccc
Q 000984 1114 LKWLRQQMGLVSQE 1127 (1198)
Q Consensus 1114 l~~LR~~IsiV~Qd 1127 (1198)
...+|.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23357789999986
No 253
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.57 E-value=1.9e-10 Score=126.56 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=91.7
Q ss_pred EEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEE
Q 000984 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1198)
Q Consensus 385 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1198)
+++++...|. .+.+++++++++++| ++|+||+|||||||+++|.++.. .|.+.++|.++.+......++.+++
T Consensus 27 ~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 4456655563 245899999999999 99999999999999999999875 7899999877654444444566778
Q ss_pred EcCCCC-CC-cccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHh
Q 000984 465 VSQEPV-LF-TGSIKDNIA-YGKDDAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1198)
Q Consensus 465 v~Q~~~-l~-~~ti~~Ni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARa 536 (1198)
++|++. .+ .-++.||+. ++..... .++..+.. .+.+ ..|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 22 345666663 2211110 01111111 1111 1367999999999999
Q ss_pred hccCCCEEEEeCCC
Q 000984 537 ILKDPRILLLDEAT 550 (1198)
Q Consensus 537 l~~~~~illlDe~t 550 (1198)
+..+|++ ||+++
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999986 56554
No 254
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.56 E-value=2.5e-08 Score=103.85 Aligned_cols=78 Identities=24% Similarity=0.438 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHH
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~yd-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1198)
|+.++|+||||||||||+++|.++++ |..|++ ||+++...+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888986 99999888888887764 3888899999988
Q ss_pred HHhcCCCCCCCHHHHHHHHHH
Q 000984 1138 NIAYGKGGDATEAEIQAASEM 1158 (1198)
Q Consensus 1138 NI~~g~~~~~tdeei~~Al~~ 1158 (1198)
|+ ||. +.+++.++++.
T Consensus 76 ~~-yg~----~~~~i~~~l~~ 91 (186)
T 3a00_A 76 NY-YGS----TVASVKQVSKS 91 (186)
T ss_dssp EE-EEE----EHHHHHHHHHT
T ss_pred ee-ccC----cHHHHHHHHHc
Confidence 87 763 34556666554
No 255
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.55 E-value=2.5e-08 Score=114.12 Aligned_cols=106 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred eeeeEECCCCCCccccccceE-------EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHH
Q 000984 1046 HHVSFKYPSRPDVQVFRDLNL-------KIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWL 1117 (1198)
Q Consensus 1046 ~nVsf~Y~~~~~~~vL~~is~-------~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~-~G~I~IDG~dI~~i~l~~L 1117 (1198)
.+++|+|... ..+.|+++.+ .+.+|+.++|+|||||||||++++|+++++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788898543 4467888887 78899999999999999999999999999997 56666554444 333 3
Q ss_pred Hhhcceeccccccc-----cccHHHHHhcCCC----CCCCHHHHHHHH
Q 000984 1118 RQQMGLVSQEPVLF-----NDTIRANIAYGKG----GDATEAEIQAAS 1156 (1198)
Q Consensus 1118 R~~IsiV~Qdp~LF-----~gTIreNI~~g~~----~~~tdeei~~Al 1156 (1198)
+...++|+|.+.-. ...|+.-|+..+. ++.+|.|..+.+
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~ 214 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLA 214 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHH
T ss_pred hccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHH
Confidence 45677888876533 3345555554421 256777766553
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.55 E-value=1.4e-08 Score=107.42 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=55.6
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCc-ccHHHHHh
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIA 481 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~ 481 (1198)
|+++++|++++|+||||||||||+++|.|+++ .+.+++.++........+..++|++|++..|. .++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999973 68888877766655555778999999998775 35555554
No 257
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.54 E-value=1.9e-07 Score=106.80 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=28.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
-+++|+.+.|.||+|||||||+..++.......|.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~ 91 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI 91 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe
Confidence 47899999999999999999988888665444443
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.53 E-value=5.3e-09 Score=108.96 Aligned_cols=127 Identities=20% Similarity=0.341 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
|+.++|+||||||||||+++|+|+++ |..|++ +|.+....+.+.++..+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 777875 77666555555544332 1333334444444
Q ss_pred HHhcCCCCCCHHHHHHHHHH----------hcHHHHHHh--------------CCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 479 NIAYGKDDATTEEIRVATEL----------ANAAKFIDK--------------LPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~----------~~~~~~i~~--------------l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|+ +|.+ .+.+.+.++. .++ ..+.. -++-+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~-~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGV-KSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHH-HHHHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHH-HHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 43 3322 2233332222 111 11222 113444555666766667788898888
Q ss_pred Hhhc-----cCCCEEEEeC
Q 000984 535 RAIL-----KDPRILLLDE 548 (1198)
Q Consensus 535 Ral~-----~~~~illlDe 548 (1198)
+.-+ +.+|.+|..|
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 8754 5567777665
No 259
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.52 E-value=1.5e-08 Score=113.85 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=35.6
Q ss_pred eeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc-cCCCCCeEEECCcccCCCChHHHHhhccee
Q 000984 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF-YDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124 (1198)
Q Consensus 1046 ~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~-ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV 1124 (1198)
+|++..|.. ..+++|++|+| +|||++|+|||||++.|++. ..|++| |.++|.++.. +. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888963 35999999998 99999999999999999997 788899 9999988754 22 1 4678999
Q ss_pred ccccccc-cccHHHHHhcC
Q 000984 1125 SQEPVLF-NDTIRANIAYG 1142 (1198)
Q Consensus 1125 ~Qdp~LF-~gTIreNI~~g 1142 (1198)
+|++-++ .-||.||..+|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EC---CCEEEEEEEEC---
T ss_pred ecCCCcccCcchhhhhhhh
Confidence 9987654 55899988775
No 260
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.52 E-value=7e-11 Score=136.27 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=104.6
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc------------cCCCCCCeEEECCeecCCcCH-HHHhcce---EEEcCCCCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIER------------FYDPQAGEVLIDGINLKEFQL-QWIRKKI---GLVSQEPVL 471 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g------------~~~~~~G~i~i~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 471 (1198)
.+++|.+++|+|++|+|||||+++|.| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567899999998743211100 0001122 366677765
Q ss_pred Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh----cCCCCCCChHHHHHHhHHHhhccCC--CEE
Q 000984 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV----GEHGTQLSGGQKQRIAIARAILKDP--RIL 544 (1198)
Q Consensus 472 ~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v----~~~g~~lSgGqkqri~lARal~~~~--~il 544 (1198)
..+ |..+++ . ......++.+ +..-..+ ......++|+. +| +++
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~----------d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAV----------DAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTC----------SEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHH----------HHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 532 222211 1 1111111111 1111111 12223345442 88 999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHH-hC-CCeEEEEecCcchhhc-cCEEE-EEeCC-EEEEecChh
Q 000984 545 LLDEATSALDAESEKVVQEALDRI-MV-NRTTVIVAHRLSTVRN-ADMIA-VIHRG-KIVEKGTHS 605 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~-~~-~~t~i~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 605 (1198)
++|||++.+|++..+...+.+... .+ ++|+ ++|.+..+.. ||++. +|++| +++..|+.+
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999887777777765 43 4554 3999887765 89999 99999 887666543
No 261
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.51 E-value=1.6e-08 Score=112.10 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=82.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc-ccc-cccHH
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLF-NDTIR 1136 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp-~LF-~gTIr 1136 (1198)
.+++++++++++| ++|+||+|||||||+++|.+...+ |.|.++|.++.+......+++++.++|++ .++ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999887 79999999998877788889999999996 333 33677
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcchHHHHHhccccccceeeeee
Q 000984 1137 ANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLLLVM 1180 (1198)
Q Consensus 1137 eNI~~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~dt~v~~~~ 1180 (1198)
|||+.... ...+++. .+. .--.+.++..|..|-...+.+++
T Consensus 110 Deid~~~~-~r~~~~~-~~~-~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 110 DEVDALCP-RRSDRET-GAS-VRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp ETCTTTCC-----------C-TTHHHHHHHHHHTCCSTTCEEEE
T ss_pred ehhhhhhc-ccCCCcc-hHH-HHHHHHHHHhhhcccccCCEEEE
Confidence 88875321 1111111 111 11135566677666555555444
No 262
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.50 E-value=1e-08 Score=121.74 Aligned_cols=159 Identities=21% Similarity=0.254 Sum_probs=93.4
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHh
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~ 481 (1198)
.+++++.++..++|.|+|||||||+++.|.. ++.+..|++.+.+.|.+......+. .-|+++. +|.+|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecC--
Confidence 4788899999999999999999999999886 5666778888888887765444332 1233321 11011
Q ss_pred cCCCCCCHHHHHHHHHH-----hcHHHHHHhCCCCccchhcCC---CCCCChHHHHHH----------hHHHhhccCCC-
Q 000984 482 YGKDDATTEEIRVATEL-----ANAAKFIDKLPQGIDTLVGEH---GTQLSGGQKQRI----------AIARAILKDPR- 542 (1198)
Q Consensus 482 ~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~g~~t~v~~~---g~~lSgGqkqri----------~lARal~~~~~- 542 (1198)
.++..++++. ..-.+.+... |....-+-+ ...+|+||+|+. ++|+++...|.
T Consensus 229 -------~~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 229 -------MKDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcE
Confidence 1111111110 0001122221 222111100 113678887752 46788888998
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHH---h--CCCeEEEEecCcc
Q 000984 543 ILLLDEATSALDAESEKVVQEALDRI---M--VNRTTVIVAHRLS 582 (1198)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~---~--~~~t~i~itH~~~ 582 (1198)
++++||+++.+|... +.+.+.+..+ . .+.++|++|||++
T Consensus 300 vlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 889999999888432 3344444332 1 2669999999987
No 263
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.50 E-value=1e-08 Score=116.24 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc--------CCCCCeEEECCcccCCCC---------------hHHHHhhccee---c
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY--------DPDAGHITLDGVEIQKLQ---------------LKWLRQQMGLV---S 1125 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y--------dp~~G~I~IDG~dI~~i~---------------l~~LR~~IsiV---~ 1125 (1198)
+.++|+|++||||||+++.|++++ .|+.|+|.|||.++...+ ..++++.++.+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998774 46788999988 7
Q ss_pred cccc-cccccHHHHHhcC
Q 000984 1126 QEPV-LFNDTIRANIAYG 1142 (1198)
Q Consensus 1126 Qdp~-LF~gTIreNI~~g 1142 (1198)
|++. .|+.++.||+.++
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 9886 4799999999776
No 264
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.48 E-value=3.9e-09 Score=112.63 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=50.8
Q ss_pred cEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH-------
Q 000984 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL------- 455 (1198)
Q Consensus 383 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~------- 455 (1198)
.++++|++..|. . ++++.+ ++++|+||||||||||+++|.|++.|++|.|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 477888765542 1 466666 8999999999999999999999999999999999988743322
Q ss_pred -HHHhcceEEEcCC
Q 000984 456 -QWIRKKIGLVSQE 468 (1198)
Q Consensus 456 -~~~r~~i~~v~Q~ 468 (1198)
...+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2235678999883
No 265
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=6.9e-09 Score=128.37 Aligned_cols=157 Identities=14% Similarity=0.161 Sum_probs=97.5
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-CeEEECCeecCCcCHHHHhcceEEEcCCC--------
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGINLKEFQLQWIRKKIGLVSQEP-------- 469 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-------- 469 (1198)
..+++++++.+++|+.++|+||+|||||||+++|.+++++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 458899999999999999999999999999999999998887 7888877655433 34688887754
Q ss_pred --------------CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHH
Q 000984 470 --------------VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1198)
Q Consensus 470 --------------~l~-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lA 534 (1198)
|.+ ..++.+|+..+........+... ......+.+.. ++.. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEec-hhhcCCccccccccccCc
Confidence 112 12233333221100000000000 00001111111 1110 112235999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHH
Q 000984 535 RAILKDPRILLLDEATSALDAESEKVVQEALDR 567 (1198)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~ 567 (1198)
+....++.+|+|||.-. |++.....+.+.+.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999987 787766666666543
No 266
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.47 E-value=2e-08 Score=104.97 Aligned_cols=141 Identities=21% Similarity=0.222 Sum_probs=74.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-----------CCCeEEECCeecCC--cCHHHHhcceEEEcCCCCCCcc--cHHH
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDP-----------QAGEVLIDGINLKE--FQLQWIRKKIGLVSQEPVLFTG--SIKD 478 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~-----------~~G~i~i~g~~~~~--~~~~~~r~~i~~v~Q~~~l~~~--ti~~ 478 (1198)
+++|+|++|||||||++.+.|...+ ..|+|.++|.++.- ++....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998754 46889999976431 1111111122233221100000 0111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHH
Q 000984 479 NIAYGKDDATTEEIRVATELANAAKFIDK-LPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1198)
Q Consensus 479 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1198)
+ .+.......... .+.+.. -+...- ..++.+ ..|..-..+....||++..+|+++++| ||++|..
T Consensus 111 ~-------~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 I-------AKHLTYENVERW---LKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp T-------TCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred C-------cCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 0 111111110000 001111 011110 112221 122222233477899999999999999 9999999
Q ss_pred hHHHHHHHHHH
Q 000984 557 SEKVVQEALDR 567 (1198)
Q Consensus 557 ~~~~i~~~i~~ 567 (1198)
....+.+.+.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88877777654
No 267
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.46 E-value=6e-08 Score=110.28 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=72.4
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc---------------------------
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--------------------------- 1094 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~--------------------------- 1094 (1198)
.|+++|. .+|. ++++|++.+| .++|||++|||||||+.+|..+
T Consensus 5 ~L~i~nf-r~~~--------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKGF-KSFG--------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEESB-TTBC--------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCC
T ss_pred EEEEeCc-eeec--------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCC
Confidence 4777772 2342 3578888999 9999999999999999999833
Q ss_pred -----------------------cCCCCCeEEECCcccCCCChHHHHhhcceeccccccc-cccHHHHHhcC
Q 000984 1095 -----------------------YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142 (1198)
Q Consensus 1095 -----------------------ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~g 1142 (1198)
+.+.+|.+++||.+++.-++..++..+++.||+..++ .|+|.+|+..+
T Consensus 75 ~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~ 146 (322)
T 1e69_A 75 AGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS 146 (322)
T ss_dssp CSEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-
T ss_pred CceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc
Confidence 3445679999999986666777777899999998765 99999999765
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.46 E-value=7.8e-08 Score=104.78 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=84.4
Q ss_pred ccccce-eEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccCCCCCCeEEECCeecCCcCHHHHh---cceEEEcCCCCCCcc
Q 000984 400 QIFSGF-SISISSGTTAALVGQSGSGKSTVISLIE-RFYDPQAGEVLIDGINLKEFQLQWIR---KKIGLVSQEPVLFTG 474 (1198)
Q Consensus 400 ~~l~~i-~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~~~~~G~i~i~g~~~~~~~~~~~r---~~i~~v~Q~~~l~~~ 474 (1198)
+.|+.+ .--+++|+.++|+||+|||||||+..++ +..+...+.+.+++.. +...++ .++++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence 356655 5578999999999999999999965554 4443333444444321 222222 223333332100
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc--cCCCEEEEeCCCCC
Q 000984 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSA 552 (1198)
Q Consensus 475 ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~ 552 (1198)
.+|+.+... .. . .+..++. .+..+.+. +....+....++.++ .+|+++++|++++-
T Consensus 83 --~~~l~~~~~-~~-~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 --KGMFAMVDA-FT-A-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp --HTSEEEEEC-ST-T-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred --CCcEEEEec-ch-h-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 001110000 00 0 0000000 00000011 122333344444444 47999999999998
Q ss_pred C--CHHhHHHHHHHHHHHh--CCCeEEEEecCcch--------h-hccCEEEEEeC
Q 000984 553 L--DAESEKVVQEALDRIM--VNRTTVIVAHRLST--------V-RNADMIAVIHR 595 (1198)
Q Consensus 553 l--D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~--------~-~~~d~i~~l~~ 595 (1198)
+ |+...+.+...+.+.. .++|+|+++|.... + ..||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5433333333343332 47899999998754 2 45899999965
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.46 E-value=2.4e-08 Score=102.45 Aligned_cols=29 Identities=41% Similarity=0.517 Sum_probs=27.4
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHH
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLL 1091 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL 1091 (1198)
||||++++||.++|+||||||||||++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999999999953
No 270
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.43 E-value=4.3e-08 Score=107.13 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=61.4
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh--cccCCCCCeEEECCcccCCCChHHHHhh
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ--RFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~--R~ydp~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
++++++++.|+.- + .+|.+ .|++|+.++|+||+|||||||++.|+ ++..+.+|.+.+++.+..+ .....+++
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 6677888888632 1 24544 79999999999999999999999999 7756778888888765422 23344577
Q ss_pred cceecccccc
Q 000984 1121 MGLVSQEPVL 1130 (1198)
Q Consensus 1121 IsiV~Qdp~L 1130 (1198)
+++++|++..
T Consensus 81 ~g~~~~~~~~ 90 (251)
T 2ehv_A 81 FGWDFEKYEK 90 (251)
T ss_dssp TTCCHHHHHH
T ss_pred cCCChHHHhh
Confidence 9999998643
No 271
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.42 E-value=5.6e-08 Score=102.88 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=53.7
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc-----------cccccc
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-----------VLFNDT 1134 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp-----------~LF~gT 1134 (1198)
++|++|+.++|+|++||||||++++|.+++.|+.| +.+ +...+... ...+..+++++|++ .++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999977655 222 22222211 11223467777765 445566
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHH
Q 000984 1135 IRANIAYGKGGDATEAEIQAASEM 1158 (1198)
Q Consensus 1135 IreNI~~g~~~~~tdeei~~Al~~ 1158 (1198)
+++|+ || ...+++.++++.
T Consensus 78 ~~~~~-~g----~~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNY-YG----TPVQYVKDTMDE 96 (207)
T ss_dssp ETTEE-EE----EEHHHHHHHHHT
T ss_pred ECCee-cC----CCHHHHHHHHHc
Confidence 66663 54 235667776653
No 272
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.41 E-value=3.3e-08 Score=104.82 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=56.4
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcC
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1198)
++-=++++|+.++|+|++||||||++++|.+.++ .+.+|+||+++|++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3344688999999999999999999999999875 47899999999987 677664
Q ss_pred CCCCCCHHHHHHHHHHcchHHHHHhc
Q 000984 1143 KGGDATEAEIQAASEMANAHKFICSL 1168 (1198)
Q Consensus 1143 ~~~~~tdeei~~Al~~A~l~dfI~~L 1168 (1198)
.. ...+.++.++++.+.+.++|..+
T Consensus 67 ~~-~~~~~~~~~~~~~~~l~~~i~~~ 91 (207)
T 2qt1_A 67 KN-GFLQYDVLEALNMEKMMSAISCW 91 (207)
T ss_dssp TT-SCBCCSSGGGBCHHHHHHHHHHH
T ss_pred cc-CCChhHHHHHhHHHHHHHHHHHH
Confidence 32 22222333444444555555544
No 273
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.39 E-value=2.6e-08 Score=103.48 Aligned_cols=74 Identities=24% Similarity=0.383 Sum_probs=61.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 472 (1198)
|+...+|++++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+..++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 67787 799998888999888875 6889999
Q ss_pred cccHHHHHhcCCC
Q 000984 473 TGSIKDNIAYGKD 485 (1198)
Q Consensus 473 ~~ti~~Ni~~~~~ 485 (1198)
.+++.+|. +|.+
T Consensus 88 ~~~~~~n~-YGt~ 99 (197)
T 3ney_A 88 FGSYQGNM-FGTK 99 (197)
T ss_dssp EEEETTEE-EEEE
T ss_pred hhhhhcee-cccc
Confidence 99999994 7754
No 274
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.38 E-value=4.8e-08 Score=109.85 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=55.7
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHhhcceecccc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
++|+++++.+++|+.++|+||+|||||||++.|.+...|++| .|.+.+.+ .+.+.+++++..+.|+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~ 90 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRV 90 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999999999999999878 78665444 35667777766666554
No 275
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.38 E-value=2.4e-07 Score=110.41 Aligned_cols=177 Identities=11% Similarity=0.160 Sum_probs=106.8
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-eEEECCeecCCcCHHHHhcce-EEEcCCCCCCcccHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKI-GLVSQEPVLFTGSIK 477 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~r~~i-~~v~Q~~~l~~~ti~ 477 (1198)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+-+. +.+...++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC-------H
Confidence 468888878999999999999999999999999987766445 5555432 23444444332 1111100 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhc--cCCCEEEEeCCCCCCCH
Q 000984 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDA 555 (1198)
Q Consensus 478 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~lD~ 555 (1198)
+.+.-| ..++++.....+.. +.+...| -.+.+ ...+|++|.+ +.+|++. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 122222 23444433332221 2232222 22222 2478999876 5667665 57999999999998753
Q ss_pred H-----hH---HHHHHHHHHHh--CCCeEEEEec---------C--cc--------hhh-ccCEEEEEeCCEE
Q 000984 556 E-----SE---KVVQEALDRIM--VNRTTVIVAH---------R--LS--------TVR-NADMIAVIHRGKI 598 (1198)
Q Consensus 556 ~-----~~---~~i~~~i~~~~--~~~t~i~itH---------~--~~--------~~~-~~d~i~~l~~G~i 598 (1198)
. .. ..+.+.++.+. .+.++|+++| . +. .+. .||.|+.|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 11 23444555443 3789999999 1 32 333 4999999987654
No 276
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.36 E-value=4.1e-08 Score=106.62 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=35.6
Q ss_pred cEEEeee-eEECCCCCCccccccceEEeeC---CCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1042 EIELHHV-SFKYPSRPDVQVFRDLNLKIRA---GKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1042 ~I~f~nV-sf~Y~~~~~~~vL~~is~~I~~---GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
-++++|| +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999843
No 277
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.34 E-value=3.5e-08 Score=104.05 Aligned_cols=52 Identities=29% Similarity=0.424 Sum_probs=47.6
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE--EECCcccCC
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI--TLDGVEIQK 1111 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I--~IDG~dI~~ 1111 (1198)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.+++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 46788999999999999999999999999999999987 78998 999998864
No 278
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.32 E-value=2.3e-07 Score=97.74 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=52.2
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHHHHHh
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIA 1140 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI~ 1140 (1198)
+-.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+..+++++|++.++.. ++.+|+.
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 334677899999999999999999999999987 9999999988531 11233468999999876643 5556653
No 279
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.32 E-value=1.3e-07 Score=117.59 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=95.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~ 483 (1198)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987654 67988 789899999999989999999999988877777776521
Q ss_pred CCCCCH--HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHH
Q 000984 484 KDDATT--EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561 (1198)
Q Consensus 484 ~~~~~~--~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i 561 (1198)
|...+ .+... - .-..+..++++| |+.++|+.+.+.+
T Consensus 82 -pG~~~f~~~~~~--------------------------------------~--l~~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 -PGYGDFVGEIRG--------------------------------------A--LEAADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp -CCSGGGHHHHHH--------------------------------------H--HHHCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred -CCccchHHHHHH--------------------------------------H--HhhcCcEEEEEc-CCcccchhHHHHH
Confidence 11110 01110 0 112455688888 9999999887655
Q ss_pred HHHHHHHhCCCeEEEEecCcchh
Q 000984 562 QEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 562 ~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
..+.. .+.++|++.|+++..
T Consensus 120 ~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 120 TVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHH---TTCCEEEEEECGGGC
T ss_pred HHHHH---ccCCEEEEecCCchh
Confidence 44332 367888888888754
No 280
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.29 E-value=8.1e-08 Score=101.89 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=63.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEE----------ECCcccCCCChHHHHhhcceeccccccccccHHH
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I~----------IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1198)
++|+.++|+||||||||||+++|.+.+++ ..+.+. .+|++..-++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 578888888999988876 6899999999888
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 000984 1138 NIAYGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1138 NI~~g~~~~~tdeei~~Al~ 1157 (1198)
| .||. +.+.+.++++
T Consensus 83 ~-~yg~----~~~~i~~~l~ 97 (208)
T 3tau_A 83 N-YYGT----PLEYVEEKLA 97 (208)
T ss_dssp E-EEEE----EHHHHHHHHH
T ss_pred c-cCCC----cHHHHHHHHH
Confidence 8 4763 3444444443
No 281
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.26 E-value=1.3e-08 Score=117.10 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=86.6
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
.+++++++.+++|+.++|+||+|||||||+++|.|.+ +|.+..- +..+ +.++..+++++|.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NLPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SSCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--eccc---hhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 6776541 1111 22233578889887542 233
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhcHHHHHHh---------CCCCcc-----chhcCCCCCCChHHHHHHhHHHhhccCC
Q 000984 480 IAYGKD---DA-TTEEIRVATELANAAKFIDK---------LPQGID-----TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1198)
Q Consensus 480 i~~~~~---~~-~~~~~~~~~~~~~~~~~i~~---------l~~g~~-----t~v~~~g~~lSgGqkqri~lARal~~~~ 541 (1198)
+.+... .. ....+. ....+.+.+.. -|+.++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 00 000000 11122222210 000001 1234455678999999999999999999
Q ss_pred CEEE-EeCCCC
Q 000984 542 RILL-LDEATS 551 (1198)
Q Consensus 542 ~ill-lDe~ts 551 (1198)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
No 282
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.26 E-value=1.5e-07 Score=96.90 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
+++|+||+|||||||+++|.+++. |.++|.+..+......++++++++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999995 778898775543225688999999987
No 283
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.25 E-value=2.2e-07 Score=104.42 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=51.1
Q ss_pred CcccEEEeeeeEECCCCCCccccc--------------cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFR--------------DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~--------------~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.+|.|+|+||+|.||.+ ..+|+ |+++.|.+||+++|||++|+|||||+++|.|+..
T Consensus 130 ~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 46899999999999853 46899 9999999999999999999999999999999863
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.25 E-value=9.4e-08 Score=98.87 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEE----------ECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~----------i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
+|++++|+||||||||||++.|.+.+++ ..|.|. ++|++...++.+.++.. +.|+..++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999998863 344443 35666666666666653 567778888888888
Q ss_pred HhcCC
Q 000984 480 IAYGK 484 (1198)
Q Consensus 480 i~~~~ 484 (1198)
.+|.
T Consensus 81 -~yg~ 84 (180)
T 1kgd_A 81 -MYGT 84 (180)
T ss_dssp -EEEE
T ss_pred -cccc
Confidence 4453
No 285
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.24 E-value=5.1e-07 Score=116.55 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=56.3
Q ss_pred ccEEEee-----eeEECCCCCCccccccceEEeeC-------CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1041 GEIELHH-----VSFKYPSRPDVQVFRDLNLKIRA-------GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1041 G~I~f~n-----Vsf~Y~~~~~~~vL~~is~~I~~-------GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
+.|+++| |++.|++ +.+|++|++|++++ |+.++|+||+||||||+++.+ ++..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999953 34699999999988 999999999999999999999 98863
Q ss_pred cCCCChHHHHhhcc-eeccccccccccHHHHH
Q 000984 1109 IQKLQLKWLRQQMG-LVSQEPVLFNDTIRANI 1139 (1198)
Q Consensus 1109 I~~i~l~~LR~~Is-iV~Qdp~LF~gTIreNI 1139 (1198)
+.+++ +|||++. .-|+.|||
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I 835 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRV 835 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBE
T ss_pred ---------HhheeEEeccCcC--CCCHHHHH
Confidence 45676 9999973 44666665
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=3.8e-07 Score=95.94 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=25.0
Q ss_pred ECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1051 ~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
+|++++..++++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 576666668999999999999999999999999999999999866
No 287
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.20 E-value=3.8e-07 Score=102.90 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=65.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH-----Hhhccee-ccccc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL-----RQQMGLV-SQEPV 1129 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~----l~~L-----R~~IsiV-~Qdp~ 1129 (1198)
++++++|++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+.... +..+ |.++.++ +|++.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 457899999999999999999999999999999999999999999999986543 2344 6679999 77755
Q ss_pred cccc-cHHHHHh
Q 000984 1130 LFND-TIRANIA 1140 (1198)
Q Consensus 1130 LF~g-TIreNI~ 1140 (1198)
+... ++++|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4433 5677765
No 288
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.20 E-value=4.2e-07 Score=113.69 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=61.2
Q ss_pred cccEEEeeeeEECCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCCeEEECCcccCCCChHH
Q 000984 1040 KGEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-PDAGHITLDGVEIQKLQLKW 1116 (1198)
Q Consensus 1040 ~G~I~f~nVsf~Y~~~--~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~yd-p~~G~I~IDG~dI~~i~l~~ 1116 (1198)
.+.|++++. +||-- .+.+|++|+||+ |+.++|+||+||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457999987 66631 235799999999 99999999999999999999999874 6788753 1 1
Q ss_pred HHhhcceeccccccccc-cHHHHHhcC
Q 000984 1117 LRQQMGLVSQEPVLFND-TIRANIAYG 1142 (1198)
Q Consensus 1117 LR~~IsiV~Qdp~LF~g-TIreNI~~g 1142 (1198)
.+.++++|+| +|.. |++|||..|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g 635 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG 635 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C
T ss_pred hccceeeHHH---hhccCCHHHHHHhc
Confidence 2467899988 5654 899999876
No 289
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.19 E-value=1.6e-07 Score=104.52 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=74.4
Q ss_pred EEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcce
Q 000984 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1198)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1198)
+++++...|. ...+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4567777774 235899999999999 99999999999999999999885 7999999999877777777888999
Q ss_pred eccccc-cc-cccHHHHHh
Q 000984 1124 VSQEPV-LF-NDTIRANIA 1140 (1198)
Q Consensus 1124 V~Qdp~-LF-~gTIreNI~ 1140 (1198)
++|++. .+ .-++.||+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp HHHHHHTSCSEEEEEETHH
T ss_pred HHHHHHhcCCcEEehhhhH
Confidence 999875 33 346778884
No 290
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.19 E-value=5.1e-07 Score=94.85 Aligned_cols=137 Identities=21% Similarity=0.238 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-----CC------CCeEEECCeecC----CcC-HHHHhcceEEEcCCCC--C--Cc
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD-----PQ------AGEVLIDGINLK----EFQ-LQWIRKKIGLVSQEPV--L--FT 473 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~-----~~------~G~i~i~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--~~ 473 (1198)
+++|+|++|||||||++.|.|... |+ .|+|.++|.++. +.+ .+..+.......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 689999999999999999999742 33 578999997542 221 2222222222223221 1 11
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-chhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC
Q 000984 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDK-LPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1198)
Q Consensus 474 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~-t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1198)
.+ +.......... .+.+.. .+.+.. -.++.+- .|..-.......||++..+|++.++| ||
T Consensus 87 ~~------------~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IA------------KHLTYENVERW---LKELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TT------------CHHHHHTHHHH---HHHHHHHSCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred Cc------------CHHHHHHHHHH---HHHHHHhcCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 11 11111111000 001111 011111 1122221 12111112245689999999999999 99
Q ss_pred CCCHHhHHHHHHHHHHH
Q 000984 552 ALDAESEKVVQEALDRI 568 (1198)
Q Consensus 552 ~lD~~~~~~i~~~i~~~ 568 (1198)
++|......+.+.+.+.
T Consensus 149 al~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999877777666543
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.19 E-value=3.8e-07 Score=95.06 Aligned_cols=62 Identities=21% Similarity=0.114 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccc-cccHHHHHhc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1198)
|+.++|+|++||||||+++.|.+ +.+|.|.+||.++... ..+++++|+...+ ..|+++|+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH
Confidence 68899999999999999999987 6689999999877542 2467888877443 4588888753
No 292
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.18 E-value=2.5e-06 Score=101.02 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=73.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
..++++++.+++| +.|+||+|+|||||++++.+..... -+.+++. +.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~is~~-----------------------------~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHISGS-----------------------------DF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEEEGG-----------------------------GT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeCCHH-----------------------------HH
Confidence 3567778888877 8999999999999999999854210 0111110 00
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCC--------
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-------- 551 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts-------- 551 (1198)
+. . .+| .|++++|-.+++|....|.|+++||+-+
T Consensus 86 ~~-------------------------~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 86 VE-------------------------L-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TT-------------------------C-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HH-------------------------H-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 00 0 011 2678899999999999999999999944
Q ss_pred --CCCHHhHHHHHHHHHHH-----hCCCeEEEEecCcchh
Q 000984 552 --ALDAESEKVVQEALDRI-----MVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 552 --~lD~~~~~~i~~~i~~~-----~~~~t~i~itH~~~~~ 584 (1198)
+.|.+..+.+.+.+..+ ..+..+|..||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 55555555554444433 1345777889998654
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.18 E-value=1.6e-07 Score=102.87 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=75.0
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
.+++++...|. .+.+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 46678877774 235899999999999 99999999999999999999886 799999999987776677788899
Q ss_pred eeccccc-cc-cccHHHHHh
Q 000984 1123 LVSQEPV-LF-NDTIRANIA 1140 (1198)
Q Consensus 1123 iV~Qdp~-LF-~gTIreNI~ 1140 (1198)
.++|++. .+ .-++.||+.
T Consensus 99 ~~~~~~~~~~~~i~~~Deid 118 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEID 118 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHH
T ss_pred HHHHHHHhcCCeEEEehhhh
Confidence 9999874 33 346677873
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.17 E-value=2.8e-07 Score=97.54 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=43.2
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~ 483 (1198)
--++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++.+ +|+.++
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 34677899999999999999999999999874 38899999988876 566543
No 295
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.13 E-value=2.6e-07 Score=99.66 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=52.1
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC------ChHH----HHhhcceecccccccc
Q 000984 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------QLKW----LRQQMGLVSQEPVLFN 1132 (1198)
Q Consensus 1064 is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i------~l~~----LR~~IsiV~Qdp~LF~ 1132 (1198)
-+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|+... .+.. .++++++++|++.+|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445689999999999999999999999998 79999999987532 1211 2567899999987764
No 296
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.12 E-value=2.9e-08 Score=113.49 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=73.9
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCC-------CEEEEEcCCCCCHHHHHHHHhccc----CCCCCeEEECCcccCC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAG-------KTVALVGESGSGKSTVVSLLQRFY----DPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~G-------ekvaIVG~SGSGKSTL~~lL~R~y----dp~~G~I~IDG~dI~~ 1111 (1198)
++.++++..|.+ ..+++++++.|++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.|+..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 455667767753 25899999999987 889999999999999999999998 6778998888887754
Q ss_pred CChHHHHhhcceeccccccccccHHHHHh
Q 000984 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1112 i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1198)
+.....+..|.+|+|...|+. ++.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 311112457999999988876 8888874
No 297
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.12 E-value=3.2e-07 Score=114.17 Aligned_cols=105 Identities=25% Similarity=0.197 Sum_probs=82.4
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHh--
Q 000984 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA-- 1140 (1198)
Q Consensus 1065 s~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~-- 1140 (1198)
|+++++|.+++|+|++|+|||||++.|.+...+ ..|+| .+|.++.++.....++.+++.+|.+.++.++++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 78999 8999999999999999999999999999999999985
Q ss_pred cCCCCCCCHHHHHHHHHHcchHHHHHhccccc
Q 000984 1141 YGKGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1198)
Q Consensus 1141 ~g~~~~~tdeei~~Al~~A~l~dfI~~LP~g~ 1172 (1198)
.|. .+. ..++..+++.++..-++-...+|+
T Consensus 82 pG~-~~f-~~~~~~~l~~ad~~ilVvD~~~g~ 111 (665)
T 2dy1_A 82 PGY-GDF-VGEIRGALEAADAALVAVSAEAGV 111 (665)
T ss_dssp CCS-GGG-HHHHHHHHHHCSEEEEEEETTTCS
T ss_pred CCc-cch-HHHHHHHHhhcCcEEEEEcCCccc
Confidence 331 122 267778888776544443333333
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.10 E-value=3.2e-07 Score=100.01 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh---cccCCCCCeEEECCcccCCCChHHHHhhcceecccccccc-ccHHHHHhc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQ---RFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAY 1141 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~---R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~-gTIreNI~~ 1141 (1198)
+++.++|+|++||||||++++|. ++..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999999999987642 245667788888876654 588888853
No 299
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.08 E-value=1.6e-06 Score=93.94 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=53.6
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCC-----CCCeEEECCccc-CCCChHHHHhhcceeccccccccccHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQR--FYDP-----DAGHITLDGVEI-QKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R--~ydp-----~~G~I~IDG~dI-~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1198)
-|++|+.++|+||+|||||||+..|.+ ...| ..|.+++++.+. ..-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4544 678999999873 112244566788988875 4567
Q ss_pred HhcC
Q 000984 1139 IAYG 1142 (1198)
Q Consensus 1139 I~~g 1142 (1198)
+.+.
T Consensus 93 ~~~~ 96 (243)
T 1n0w_A 93 VAYA 96 (243)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6653
No 300
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.07 E-value=4.1e-07 Score=98.69 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=36.1
Q ss_pred cEEEEeE-EEEcCCCCCCccccceeEEEeC---CCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 383 DIELRDV-YFSYPARPNEQIFSGFSISISS---GTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 383 ~i~~~~v-~~~y~~~~~~~~l~~i~l~i~~---g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.++++|+ +|+|.. +.++|+|+||+|++ |+.++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35799999999999 9999999999999999999999865
No 301
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.05 E-value=2.1e-07 Score=110.91 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=90.4
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCC-CC-cccH
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LF-TGSI 476 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~-l~-~~ti 476 (1198)
+..++++++++++| +.|+||+|||||||+++|.++.. .|.+.++|.++.+......++++..++|++. .. .-.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 35789999999999 99999999999999999999875 6899999988766544445566778888764 22 2345
Q ss_pred HHHHh-cCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC
Q 000984 477 KDNIA-YGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1198)
Q Consensus 477 ~~Ni~-~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1198)
-|+|. ++.... ..++..+.+ ...+. .|||||+|+..+++|...+|++ |||++
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 66774 222111 112221111 11121 2678899999999999999988 89988
Q ss_pred CC
Q 000984 551 SA 552 (1198)
Q Consensus 551 s~ 552 (1198)
-.
T Consensus 187 lr 188 (499)
T 2dhr_A 187 LR 188 (499)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 302
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.03 E-value=1.9e-06 Score=99.02 Aligned_cols=143 Identities=10% Similarity=0.188 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-----------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCCC----CcccHHH
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD-----------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL----FTGSIKD 478 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~-----------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l----~~~ti~~ 478 (1198)
.++|+|++|||||||++.|.|... +..|.|.++|.++.- ....|++.|.|.- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l------~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML------VDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE------EECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE------EeCCCchhcCCHHHHHHHHHHH-H
Confidence 499999999999999999999765 567899999865422 2246666665532 22222 2
Q ss_pred HHh------cCCC-CCCHHHHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHHHHhHH----Hhh-ccCCCEE
Q 000984 479 NIA------YGKD-DATTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQRIAIA----RAI-LKDPRIL 544 (1198)
Q Consensus 479 Ni~------~~~~-~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~v~~~g~~lSgGqkqri~lA----Ral-~~~~~il 544 (1198)
.+. +..+ ...........+. ..+.+..+ ++----.|+.+...+|+|++||+.++ +++ ..++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 221 1111 0111111111111 11222222 11111223555556788899988877 666 444454
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh
Q 000984 545 LLDEATSALDAESEKVVQEALDRIM 569 (1198)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~ 569 (1198)
+|+|++|.+.-..+.+.|.+..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 7999999998887777776543
No 303
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.01 E-value=2.7e-06 Score=98.23 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=34.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCCeEEECC
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDG 447 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~~~G~i~i~g 447 (1198)
.+|++++++++ .++|||++|||||||++.|.| ++++..|.+.-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47899999998 999999999999999999999 6677777665433
No 304
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.01 E-value=3e-07 Score=110.90 Aligned_cols=90 Identities=29% Similarity=0.317 Sum_probs=64.2
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEE-ECCcccCC-------CCh---HHHHhhcceeccccccccc
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HIT-LDGVEIQK-------LQL---KWLRQQMGLVSQEPVLFND 1133 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~-IDG~dI~~-------i~l---~~LR~~IsiV~Qdp~LF~g 1133 (1198)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++. ...++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999887 785 99988743 222 23557789999983
Q ss_pred cHHHHHhcCCC---CCCCHHHHHHHHHHcc
Q 000984 1134 TIRANIAYGKG---GDATEAEIQAASEMAN 1160 (1198)
Q Consensus 1134 TIreNI~~g~~---~~~tdeei~~Al~~A~ 1160 (1198)
+..+|+.+... .....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 34555544311 0123455666666554
No 305
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.00 E-value=8.5e-07 Score=91.70 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=64.9
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc--ccCCCChH----HHHhhcceecccc-------
Q 000984 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV--EIQKLQLK----WLRQQMGLVSQEP------- 1128 (1198)
Q Consensus 1062 ~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~--dI~~i~l~----~LR~~IsiV~Qdp------- 1128 (1198)
+++++++.+| .++|||+||||||||+.+|..+..+..|...-.+. ++-.-+.. ..+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887776544332 11111110 2356799999986
Q ss_pred ---ccccccHHHH----HhcCCCCCCCHHHHHHHHHHcchH
Q 000984 1129 ---VLFNDTIRAN----IAYGKGGDATEAEIQAASEMANAH 1162 (1198)
Q Consensus 1129 ---~LF~gTIreN----I~~g~~~~~tdeei~~Al~~A~l~ 1162 (1198)
+.+..++..+ +.... ...+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g-~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNG-RRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETT-EEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECC-eEcCHHHHHHHHHHcCCC
Confidence 2233333221 11111 135678888888877654
No 306
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.00 E-value=2.5e-06 Score=98.90 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=53.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHH--hcccCCCC-----CeEEECCccc-CCCChHHHHhhcceeccccccccccHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDA-----GHITLDGVEI-QKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL--~R~ydp~~-----G~I~IDG~dI-~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1198)
-|++|+.++|+||+|||||||+..| ....+++. +.|+||+.+. +...+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 45555543 4899999873 33334556678898877 57788
Q ss_pred HhcCC
Q 000984 1139 IAYGK 1143 (1198)
Q Consensus 1139 I~~g~ 1143 (1198)
+.+..
T Consensus 247 i~~~~ 251 (400)
T 3lda_A 247 VAYAR 251 (400)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87753
No 307
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=2e-06 Score=90.42 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=25.1
Q ss_pred EcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 392 ~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+|+..+..+.++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455556678999999999999999999999999999999999876
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.99 E-value=1.1e-06 Score=92.52 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=41.7
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1198)
++.++|++++|+|++|||||||+++|.+.+ |.+.++|.++.... ...+..+++++|++
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDE 81 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCc
Confidence 566789999999999999999999999987 89999987764211 11123467777754
No 309
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.98 E-value=2.3e-06 Score=90.59 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=43.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCeEE----------ECCeecCCcCHHHHhcceEEEcCCCCCCcccHHH
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~----------i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1198)
++|++++|+||||||||||++.|.+.+++ ..+.+. .+|++...++...+++.+ .|+..+..+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 57999999999999999999999999876 323222 234444444444444432 3444555555555
Q ss_pred H
Q 000984 479 N 479 (1198)
Q Consensus 479 N 479 (1198)
|
T Consensus 83 ~ 83 (208)
T 3tau_A 83 N 83 (208)
T ss_dssp E
T ss_pred c
Confidence 5
No 310
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.98 E-value=1.7e-06 Score=99.43 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=52.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
.+|+++|+.+++|+.++|+||+|||||||+++|.+.+ +|.+..- +. +.+.++..++.+||...+|
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~l 221 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLVV 221 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCEE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHHH
Confidence 5899999999999999999999999999999999965 5777651 11 1233455689999998753
No 311
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.96 E-value=3.4e-07 Score=96.41 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=44.5
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE--EECCeec
Q 000984 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--LIDGINL 450 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i--~i~g~~~ 450 (1198)
....+..++..++|++++|+|++||||||++++|.+.+. ..|.+ .+||.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 346778888889999999999999999999999999987 77988 8887554
No 312
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.95 E-value=2.9e-06 Score=95.63 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=55.5
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCH----HHH-----hcceEEE-cCCC
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWI-----RKKIGLV-SQEP 469 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~-----r~~i~~v-~Q~~ 469 (1198)
+++++|++++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+..... ..+ +..+.++ +|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888888999999999999999999999999999999999998888765431 233 5678888 6653
No 313
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.94 E-value=2.8e-06 Score=89.68 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=29.5
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+++++|++++|+||+||||||+++.|.+.+.|..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999877544
No 314
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.91 E-value=8.2e-07 Score=107.15 Aligned_cols=71 Identities=28% Similarity=0.338 Sum_probs=53.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-eEE-ECCeecCC-------cCH---HHHhcceEEEcCCCCCCcc
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVL-IDGINLKE-------FQL---QWIRKKIGLVSQEPVLFTG 474 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~-i~g~~~~~-------~~~---~~~r~~i~~v~Q~~~l~~~ 474 (1198)
..+++|+.++|+|+||||||||+++|.|.+.|.+| ++. +||.++.+ ++. ...++++++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35789999999999999999999999999999887 785 89976532 122 22345678888862
Q ss_pred cHHHHHhc
Q 000984 475 SIKDNIAY 482 (1198)
Q Consensus 475 ti~~Ni~~ 482 (1198)
+..+|+.+
T Consensus 439 ~~~~~ivi 446 (552)
T 3cr8_A 439 TKNRGIAI 446 (552)
T ss_dssp HHTTCEEE
T ss_pred HhcCCEEE
Confidence 44455544
No 315
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.91 E-value=1.7e-06 Score=93.04 Aligned_cols=68 Identities=22% Similarity=0.132 Sum_probs=54.7
Q ss_pred ccccccceE-EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH---hhcceecccc
Q 000984 1058 VQVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR---QQMGLVSQEP 1128 (1198)
Q Consensus 1058 ~~vL~~is~-~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR---~~IsiV~Qdp 1128 (1198)
.+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+.. .+.++ ..+++.+|+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGG
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHH
Confidence 357999998 89999999999999999999999999888888899988776553 33333 3567766654
No 316
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.86 E-value=3.8e-06 Score=86.72 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=47.2
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCe--ecCCcCH----HHHhcceEEEcCCC
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEFQL----QWIRKKIGLVSQEP 469 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~--~~~~~~~----~~~r~~i~~v~Q~~ 469 (1198)
+++++++.+| +++|+||||||||||+.+|.+.+.+..|...-.+. ++-..+. ...+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988887765422221 1100000 01245788898886
No 317
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.84 E-value=6.9e-06 Score=84.17 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=43.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh-hcceeccccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-QMGLVSQEPV 1129 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~-~IsiV~Qdp~ 1129 (1198)
.+|+.++|+|++||||||+++.|.+.+ |.+.+||.++.. ...+++ .++.++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDD 61 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCccc
Confidence 468999999999999999999999876 899999988763 223333 4677777643
No 318
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.82 E-value=5.5e-05 Score=86.00 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=42.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE-EECCeecCCcCHHHHhcceEEEcCC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINLKEFQLQWIRKKIGLVSQE 468 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-~i~g~~~~~~~~~~~r~~i~~v~Q~ 468 (1198)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+..+ ....+++++.+|+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKS 115 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGG
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhh
Confidence 378999999999999999999999999887777765 556543221 1133456665554
No 319
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=1.5e-05 Score=79.30 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=42.1
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccCCC
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQKL 1112 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G--~I~IDG~dI~~i 1112 (1198)
+|+++ +|+.++|+|++|+|||||++++.+.+.+ +| .+++++.++..-
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 67777 9999999999999999999999999987 68 899999887654
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.80 E-value=6.8e-07 Score=100.32 Aligned_cols=124 Identities=11% Similarity=0.190 Sum_probs=71.1
Q ss_pred ccccceeEEEeCCC------EEEEEcCCCCcHHHHHHHHhccCCC--CCCeEEECCeecCCcCHHHHhcceEEEcCCCCC
Q 000984 400 QIFSGFSISISSGT------TAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~------~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 471 (1198)
..|++++..+..++ ++||+||||||||||+++|.+++.+ .+|. ++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 45666777776665 8999999999999999999999873 4444 4555666554
Q ss_pred CcccHHHHH----hcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCc-cchhcCCCCCCChHHHHHHhHHHhhccCCCEEE
Q 000984 472 FTGSIKDNI----AYGKDD-ATTEEIRVATELANAAKFIDKLPQGI-DTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1198)
Q Consensus 472 ~~~ti~~Ni----~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~v~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1198)
.....++.. .+|.|. .+.+...+ .+..+..|. ...+- .+|-+..+|+.-+......|+|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~~---------~L~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLLR---------VLNAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHHH---------HHHHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHHH---------HHHhhhccccccccc----hhhhhccccccCceeeccCCCEEE
Confidence 443333321 123332 22233322 233333343 11110 122222334433445667899999
Q ss_pred EeCCCCCCCH
Q 000984 546 LDEATSALDA 555 (1198)
Q Consensus 546 lDe~ts~lD~ 555 (1198)
++-+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9999876554
No 321
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.73 E-value=6.1e-06 Score=92.12 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=55.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|.+++.+..|+|.+.|.|+..-
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH
Confidence 6778899999532 1 789998 9999999999999999999999999999999999999998653
No 322
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.71 E-value=9.2e-05 Score=85.14 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEe-CCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcc
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLD-EATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlD-e~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~ 582 (1198)
..+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.....++.+|+|.+..+
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~D 291 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKID 291 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 457999999887 66666777889999 99999999887777666766555788888884443
No 323
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.71 E-value=2.7e-05 Score=98.52 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=49.8
Q ss_pred CCCChHHHHHHhHHHhhccCCCEEEEeCCCC-CCCHHhHHHHHHHHHHHhCC-CeEEE-EecCcchhh
Q 000984 521 TQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEALDRIMVN-RTTVI-VAHRLSTVR 585 (1198)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~i~~~~~~-~t~i~-itH~~~~~~ 585 (1198)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.....+ +++++ .||..+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 3468999999999999999999999999997 89987655555555555444 45555 478876554
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.69 E-value=1.3e-05 Score=84.22 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=42.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~ 1115 (1198)
..++|+.+||+|++||||||+++.|.+++.+.+|.|.+.|.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 4678999999999999999999999999998899999988887655543
No 325
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.68 E-value=5.9e-05 Score=85.10 Aligned_cols=108 Identities=10% Similarity=0.203 Sum_probs=68.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
+-|+.+.--+++|+++.|.|++|+|||||+.-++.......+ .+.|++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeC------------
Confidence 356665556899999999999999999999888765433222 3444331
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCCCC
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1198)
+.+.+++..-+-.. ...++ ++.... ..||.+++||++.|...+.+++++|.|+|..++|
T Consensus 83 ------Ems~~ql~~Rlls~-----~~~v~--~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSD-----LTSIN--MHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHH-----HHCCC--HHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHH-----hhCCC--HHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 12334332211110 01110 111111 2699999999999999999999999999876543
No 326
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.66 E-value=7.3e-06 Score=92.25 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=49.3
Q ss_pred cccEEEEeEEEEcCCCCCCcccc--------------ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 381 RGDIELRDVYFSYPARPNEQIFS--------------GFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~--------------~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.+.|+|++|.||. ++..|+ |+++.+.+|++++|+|++|||||||++.|.+..
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 567999999999985 356888 899999999999999999999999999999976
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.64 E-value=1.4e-05 Score=89.67 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=41.7
Q ss_pred cccccceEEeeCCC------EEEEEcCCCCCHHHHHHHHhcccC--CCCCeEEECCccc
Q 000984 1059 QVFRDLNLKIRAGK------TVALVGESGSGKSTVVSLLQRFYD--PDAGHITLDGVEI 1109 (1198)
Q Consensus 1059 ~vL~~is~~I~~Ge------kvaIVG~SGSGKSTL~~lL~R~yd--p~~G~I~IDG~dI 1109 (1198)
..|++++..+.+++ .+||+|+|||||||+++.|.++++ |++|.+.+-+.|-
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 57889999988887 899999999999999999999998 4566654444443
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.62 E-value=2.6e-05 Score=82.17 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=40.3
Q ss_pred CChHHHHHHhHHHhhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcch---hhccCEEEEEeC
Q 000984 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST---VRNADMIAVIHR 595 (1198)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~---~~~~d~i~~l~~ 595 (1198)
.+.|+.+|..+++.++.+|+.+-.+ .+.+++...+.+.+.+... .+.++|+-+|.+.. ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999988887643322 2234454444444444332 35577777887654 356899998863
No 329
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.60 E-value=3.9e-05 Score=86.98 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+++|+.+.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999999998888754
No 330
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.55 E-value=2e-05 Score=91.72 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=32.7
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1061 L~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
-++|+|++++|+.|||||++|||||||++.|.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999999999999999997
No 331
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.53 E-value=2.1e-05 Score=95.55 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=40.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.+++++++++ +|+.++|+||+|||||||+++|.+.+.+..|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4677888888 8999999999999999999999999988777776554
No 332
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.52 E-value=1.7e-05 Score=81.59 Aligned_cols=42 Identities=43% Similarity=0.532 Sum_probs=36.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQK 1111 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G--~I~IDG~dI~~ 1111 (1198)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998876 57 78889877754
No 333
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.52 E-value=2.8e-05 Score=82.72 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=44.2
Q ss_pred cccccceE-EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHh
Q 000984 1059 QVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1198)
Q Consensus 1059 ~vL~~is~-~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~ 1119 (1198)
+.|+++.. -+++|+.++|+|++||||||+++.|.+ .+..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH
Confidence 46777776 799999999999999999999999999 4555677887654 234444443
No 334
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.50 E-value=1.6e-05 Score=82.79 Aligned_cols=38 Identities=37% Similarity=0.521 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC-----------CCCeEEECCcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDP-----------DAGHITLDGVEIQ 1110 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp-----------~~G~I~IDG~dI~ 1110 (1198)
+++|||++|||||||++.|.+...+ .+|+|.+||.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 7999999999999999999997765 5789999997653
No 335
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.49 E-value=3e-05 Score=86.58 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=50.4
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHH--Hhhcceeccc
Q 000984 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWL--RQQMGLVSQE 1127 (1198)
Q Consensus 1064 is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l----~~L--R~~IsiV~Qd 1127 (1198)
++++.++|+.++|||++||||||++..|.+++.+++|+|.+.+.|+..... ..+ +..+.+++|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 166 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence 455678899999999999999999999999999999999999988754321 122 2356677764
No 336
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.48 E-value=0.00026 Score=82.39 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=85.1
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHH-HhcceEEEcCCCCCCcccHHHHHh
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKIGLVSQEPVLFTGSIKDNIA 481 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i~~v~Q~~~l~~~ti~~Ni~ 481 (1198)
++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ ++.. .-+.|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999999887765543322 2110 0011221
Q ss_pred c--CCCCCCHHHHHHHHHHhcHHHHHHhC-CCCccchhcCCCCCCC---hHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 482 Y--GKDDATTEEIRVATELANAAKFIDKL-PQGIDTLVGEHGTQLS---GGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 482 ~--~~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~t~v~~~g~~lS---gGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
+ ..+..+..++.. +.+..+ .+++|..+=+.+..+. .-..+...+++++..++-+|++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~~--------~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIRR--------RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHHH--------HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHHH--------HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 1 011123333311 122222 2466655433222332 34667778888886666677777 5555444
Q ss_pred HhHHHHHHHHHHHhCCCeEEEEec
Q 000984 556 ESEKVVQEALDRIMVNRTTVIVAH 579 (1198)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH 579 (1198)
.. .+ +.+.+. -+.+-|++|+
T Consensus 227 v~--~a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LS--VA-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HH--HH-HHHHHH-TCCCEEEEES
T ss_pred HH--HH-HHHHhc-CCceEEEEeC
Confidence 32 11 222222 2346667774
No 337
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=4.7e-05 Score=87.53 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-ccCCCCCeEEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-FYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
.+.|+||+|+||||++++|.+ ++.|+.|.|.++|.++..... -+..+++++|++++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 95 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLE 95 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEE
Confidence 499999999999999999999 899999999999998765433 278899999998763
No 338
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.45 E-value=0.00014 Score=84.68 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCee
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1198)
++..++++|++||||||++..|.+.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 468999999999999999999999998887877765544
No 339
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.44 E-value=3.4e-05 Score=80.99 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=38.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1198)
.++|++++|+|++||||||+++.|.+.+++.+|.|.+.+.|...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 56789999999999999999999999998888988877655433
No 340
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.43 E-value=1.4e-05 Score=85.20 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc---ccCCCCCeE--------EECCcccCCCC-hHHHHhhcceec------ccccccc
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQR---FYDPDAGHI--------TLDGVEIQKLQ-LKWLRQQMGLVS------QEPVLFN 1132 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R---~ydp~~G~I--------~IDG~dI~~i~-l~~LR~~IsiV~------Qdp~LF~ 1132 (1198)
.-.++|+|++||||||+++.|.+ +.-.+.|.+ .-.|+|+.+.. +..+.+++.+.+ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 34899999999999999999984 444556666 34577776653 667777887777 6677887
Q ss_pred ccHHHHHh
Q 000984 1133 DTIRANIA 1140 (1198)
Q Consensus 1133 gTIreNI~ 1140 (1198)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 78877775
No 341
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.42 E-value=3.7e-05 Score=96.78 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=53.8
Q ss_pred ccEEEeeeeEECCCC----CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEEECCcccCCCChH
Q 000984 1041 GEIELHHVSFKYPSR----PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHITLDGVEIQKLQLK 1115 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~----~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I~IDG~dI~~i~l~ 1115 (1198)
+.|++++. ++|=- .+..|++|+||+ ++|+.++|+||+||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 35777764 55520 134699999999 99999999999999999999999997532 233 12211
Q ss_pred HHHhhcceecccccccc-ccHHHHHhcC
Q 000984 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYG 1142 (1198)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~-gTIreNI~~g 1142 (1198)
-+.++++++| +|. -++.+|+..+
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~ 666 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG 666 (800)
T ss_dssp -SEEEECCCCE---EEEEEC--------
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh
Confidence 1356788877 454 3788898765
No 342
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.41 E-value=2.6e-05 Score=82.08 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=47.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeE----------EECCcccCCCChHHHHhhcceeccccccccccH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHI----------TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp-~~G~I----------~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTI 1135 (1198)
+..+|..++|+|+|||||||+++.|.+.++. ..+.| .+||.|..-++.+.+++.+ .|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 4678999999999999999999999987742 11222 3578888778888877653 35555554443
Q ss_pred HHH
Q 000984 1136 RAN 1138 (1198)
Q Consensus 1136 reN 1138 (1198)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 333
No 343
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.41 E-value=7.1e-05 Score=89.15 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=72.3
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
.+++++...|. ++.+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 41 ~~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~ 113 (499)
T 2dhr_A 41 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 113 (499)
T ss_dssp HHHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHH
T ss_pred HHHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHH
Confidence 34556655563 234899999999999 99999999999999999999875 789999999998877777788888
Q ss_pred eeccccc-ccc-ccHHHHHh
Q 000984 1123 LVSQEPV-LFN-DTIRANIA 1140 (1198)
Q Consensus 1123 iV~Qdp~-LF~-gTIreNI~ 1140 (1198)
.++|++. .+. -.+-|||+
T Consensus 114 ~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGG
T ss_pred HHHHHHHhcCCCEEEEehHH
Confidence 8999874 232 34567774
No 344
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.34 E-value=7e-05 Score=80.43 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=36.3
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~ 451 (1198)
+.+.++|++++|+|++||||||++++|.|. .|+|.+.+.+..
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE 55 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence 335578999999999999999999999998 788999887653
No 345
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.32 E-value=5.1e-05 Score=79.40 Aligned_cols=58 Identities=22% Similarity=0.465 Sum_probs=40.8
Q ss_pred eEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----cc----CCCCCeEEECCccc
Q 000984 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FY----DPDAGHITLDGVEI 1109 (1198)
Q Consensus 1049 sf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R----~y----dp~~G~I~IDG~dI 1109 (1198)
+|+|++- .++|+++|++.+++ +|++||++|+|||||++.|.+ -| .++.+.+.+||.++
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 4677642 35899999998887 799999999999999999986 22 33567788888544
No 346
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.32 E-value=0.00083 Score=77.94 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=25.8
Q ss_pred CCC--EEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 411 SGT--TAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 411 ~g~--~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
++. .+.|+||+|+|||||++.+.+.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 456 89999999999999999999988765
No 347
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.31 E-value=0.0001 Score=84.99 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=38.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc------------ccCCCCCeEEECCcc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQR------------FYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R------------~ydp~~G~I~IDG~d 1108 (1198)
++++|.++||||++|+|||||+++|.+ ..+|+.|.|.++|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 567899999999999999999999999 678999999998843
No 348
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.31 E-value=6e-05 Score=78.81 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----CC------CCCeEEECCccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY-----DP------DAGHITLDGVEI 1109 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y-----dp------~~G~I~IDG~dI 1109 (1198)
+++|||++|||||||++.|.+.. .| ..|.|.+||.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 79999999999999999999873 23 357899999765
No 349
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.29 E-value=0.00013 Score=92.94 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=47.8
Q ss_pred ccEEEeeeeEECCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHH--------hcccCCCCCe
Q 000984 1041 GEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--------QRFYDPDAGH 1101 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~~~--~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL--------~R~ydp~~G~ 1101 (1198)
+.|++++...-+-.. .+..|++|++|++++|+.++|+||+||||||+++.+ .+.+-|.++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 468888764333221 134699999999999999999999999999999999 7777776543
No 350
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.25 E-value=6.8e-05 Score=86.40 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=34.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCCeEEE
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR--FYDPDAGHITL 1104 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R--~ydp~~G~I~I 1104 (1198)
.+|++++++++ .|++||++|||||||++.|.+ |.++.+|.+.-
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 48999999999 999999999999999999999 77777776643
No 351
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.24 E-value=0.0001 Score=75.31 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=33.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~ 451 (1198)
.+|++++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88889886553
No 352
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.24 E-value=5.6e-05 Score=86.31 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=46.9
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 48999999999999999999999999999999999998888888877666643
No 353
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.23 E-value=0.00012 Score=81.41 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=38.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKL 1112 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i 1112 (1198)
++|+.+++||++||||||++..|.+.+.+++| +|.+-+.|....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI 147 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence 47999999999999999999999999998788 777777776543
No 354
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.23 E-value=0.00011 Score=86.86 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=43.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc------------CCCCCeEEECCcccCCCChHHHHhhcceeccccccccc-cHHHH
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFY------------DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRAN 1138 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~y------------dp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreN 1138 (1198)
-++||||++|+|||||++.|.+.. ++.+|.+.+||.++.-++..-+|+..++.+|+...|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 479999999999999999999874 37789999999987666666667777777777666642 23345
Q ss_pred Hh
Q 000984 1139 IA 1140 (1198)
Q Consensus 1139 I~ 1140 (1198)
++
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 355
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.22 E-value=5.8e-05 Score=77.59 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=33.5
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 000984 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1198)
Q Consensus 1065 s~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~ 1101 (1198)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5678899999999999999999999999999877773
No 356
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.21 E-value=3.7e-05 Score=80.66 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=41.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc------ccCCCCCeEEECCc--ccCCCCh--------HHHHhhcceeccccccccccHH
Q 000984 1073 TVALVGESGSGKSTVVSLLQR------FYDPDAGHITLDGV--EIQKLQL--------KWLRQQMGLVSQEPVLFNDTIR 1136 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R------~ydp~~G~I~IDG~--dI~~i~l--------~~LR~~IsiV~Qdp~LF~gTIr 1136 (1198)
.|+|+|++||||||++++|.+ +.+|..|...++.. |-...+. ..+++....+.|+.+++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 45555454333321 1111110 1133444567788899999988
Q ss_pred HHHhc
Q 000984 1137 ANIAY 1141 (1198)
Q Consensus 1137 eNI~~ 1141 (1198)
+|+.|
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 87765
No 357
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.16 E-value=8.7e-05 Score=90.15 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=52.6
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
+-.++|..+|. +..+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|..-..--....|+.++
T Consensus 84 ~G~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 84 HGLEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp SSCHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred ccHHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence 33566776673 235789999999 89999999999999999999999999999999999885432222233445667
Q ss_pred eecccc
Q 000984 1123 LVSQEP 1128 (1198)
Q Consensus 1123 iV~Qdp 1128 (1198)
.++|..
T Consensus 160 ~~~~~~ 165 (543)
T 3m6a_A 160 AMPGRI 165 (543)
T ss_dssp ----CH
T ss_pred cCchHH
Confidence 666654
No 358
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=8.7e-05 Score=84.82 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.3
Q ss_pred CccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCCe
Q 000984 399 EQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGE 442 (1198)
Q Consensus 399 ~~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1198)
..+++.++..++.|+. +.+.||+|+||||+++++.+.+.+..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 3588889999999998 9999999999999999999988665543
No 359
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.15 E-value=7.2e-05 Score=78.37 Aligned_cols=81 Identities=27% Similarity=0.327 Sum_probs=50.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCC-h--HHHHhhcceeccccccccccHHHHHhcCCCCCC
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQ-L--KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDA 1147 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~-~i~-l--~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~ 1147 (1198)
..|+|+|++||||||+.++|.+. |-..||.-++. +.. - ..+++.. |+.+. +|++ +|..++.. ..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~-~~ 76 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARL-VF 76 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHH-HT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHH-Hh
Confidence 47999999999999999999985 77788765542 110 0 2333332 56555 7777 55544321 24
Q ss_pred CHHHHHHHHHHcchHHHH
Q 000984 1148 TEAEIQAASEMANAHKFI 1165 (1198)
Q Consensus 1148 tdeei~~Al~~A~l~dfI 1165 (1198)
++++.+..++ ...|.+|
T Consensus 77 ~~~~~~~~l~-~~~~~~i 93 (203)
T 1uf9_A 77 SDPERLKALE-AVVHPEV 93 (203)
T ss_dssp TSHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHH-HHhChHH
Confidence 4556666665 2344444
No 360
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.14 E-value=8.1e-05 Score=78.73 Aligned_cols=45 Identities=38% Similarity=0.421 Sum_probs=40.3
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccC
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQ 1110 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G--~I~IDG~dI~ 1110 (1198)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||-+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45788999999999999999999999999988889 8999986664
No 361
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.13 E-value=0.00011 Score=90.72 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=56.1
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-CeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-GHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~-G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
.+++++++.+++|+.+.|+||+|+|||||+++|.++..+.. |.+.+++.+..... ..++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~ 113 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecch
Confidence 58999999999999999999999999999999999999887 88999988776543 3467776654
No 362
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.13 E-value=0.00012 Score=88.72 Aligned_cols=72 Identities=26% Similarity=0.392 Sum_probs=55.7
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc----------------------c-C---------------CCCCe
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF----------------------Y-D---------------PDAGH 1101 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~----------------------y-d---------------p~~G~ 1101 (1198)
.+++++|++.+| ..+|+|++|||||||+.+|.-+ + + ..++.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~ 128 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCE
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcE
Confidence 578899999999 9999999999999999999444 4 2 23678
Q ss_pred EEECCcccCCCChHHHHhh-cceecccccccc
Q 000984 1102 ITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFN 1132 (1198)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~-IsiV~Qdp~LF~ 1132 (1198)
++|||.+++.-.+.++-.. +.+++|+-.++.
T Consensus 129 ~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l 160 (517)
T 4ad8_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL 160 (517)
T ss_dssp EESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred EEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence 9999998865445555444 688899875543
No 363
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.11 E-value=0.00015 Score=82.96 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=37.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
+++.+|||+|++|||||||++.|.+...+.+|+|.|.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 45789999999999999999999999999999999988876543
No 364
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.08 E-value=0.00027 Score=75.61 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=32.5
Q ss_pred cccceEEee---CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 000984 1061 FRDLNLKIR---AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1198)
Q Consensus 1061 L~~is~~I~---~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~ID 1105 (1198)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 555566555 8999999999999999999999999987 6777543
No 365
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.05 E-value=0.00042 Score=78.07 Aligned_cols=107 Identities=10% Similarity=0.125 Sum_probs=65.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
+.|+++.--+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 457776656899999999999999999999887753211 11 134444322
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCC
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1198)
.+.+++..-+... .. |.+. .+-.+-..||++++||+.-|...+.++++++.|+|...
T Consensus 106 -------~s~~~l~~R~~~~-----~~----~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 -------MGKKENIKRLIVT-----AG----SINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -------SCHHHHHHHHHHH-----HT----TCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -------CCHHHHHHHHHHH-----Hc----CCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 2233332211110 00 1110 01010012889999999999988889999999988644
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.05 E-value=6.9e-05 Score=76.94 Aligned_cols=39 Identities=38% Similarity=0.476 Sum_probs=32.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--eEEECCee
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGIN 449 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g~~ 449 (1198)
++|++++|+|++||||||+++.|.+.+.+ .| .+.+||..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 47899999999999999999999998766 56 56666643
No 367
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.04 E-value=0.00027 Score=73.16 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=29.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----ccC----CCCCeEEECCccc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FYD----PDAGHITLDGVEI 1109 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R----~yd----p~~G~I~IDG~dI 1109 (1198)
+|+++++..++. +|++||++|+|||||++.|.+ -|. +..+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 789999998887 899999999999999999987 233 3456777887544
No 368
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.99 E-value=0.00019 Score=91.15 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=41.3
Q ss_pred ccEEEeeeeEECC------CCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1041 GEIELHHVSFKYP------SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1041 G~I~f~nVsf~Y~------~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
+.|++++. ++| ...+..|++|+||++++|+.++|+||+||||||+++.+..
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 35777763 454 1123579999999999999999999999999999998864
No 369
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.97 E-value=0.0021 Score=71.57 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=25.8
Q ss_pred hHHHHHHhHHHhhccCCCEEEEeCCCCCCCH
Q 000984 525 GGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1198)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1198)
++++.|-.+++|...+|.++++||+.+-.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 5777777888888889999999999887664
No 370
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.97 E-value=0.00017 Score=91.63 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=47.7
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccc
Q 000984 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127 (1198)
Q Consensus 1062 ~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qd 1127 (1198)
...++.+++|+.+.|+||+|+|||||+++|.+... .+-|.++|-++.+--.....+++..++|.
T Consensus 502 ~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp TTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred HHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhhhhcCccHHHHHHHHHH
Confidence 34577889999999999999999999999999885 46788888877554333334445555554
No 371
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.97 E-value=0.00034 Score=71.14 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=31.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC------------CCCeEEECCccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP------------DAGHITLDGVEI 1109 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~ydp------------~~G~I~IDG~dI 1109 (1198)
++|.+|+|||++|+|||||++.|.+...+ ..+.+.+||.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999985321 236778888543
No 372
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.00031 Score=71.45 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~d 1108 (1198)
.|+.++|+|++||||||++++|.+.+.+ +.+|+-+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSDQ 37 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEeccH
Confidence 4788999999999999999999998754 6777543
No 373
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.96 E-value=0.0039 Score=66.98 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665554
No 374
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.90 E-value=0.0018 Score=73.73 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988875
No 375
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.89 E-value=0.00038 Score=80.93 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=54.2
Q ss_pred EEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~ 1113 (1198)
+..++++..|... . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+..-.
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~a 140 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHH
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCch
Confidence 5566778888532 1 678888 89999999999999999999999999999999999998886643
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.88 E-value=0.00016 Score=82.58 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=42.4
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.+++++++.+++|..++|+|++|+|||||++.|++.+.+.+|++.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 478899999999999999999999999999999999888777766543
No 377
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.86 E-value=0.00052 Score=80.99 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=39.1
Q ss_pred cEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 000984 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1198)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G 1100 (1198)
.|+++|+ .+|.+ . . .+++.+|+.++|+||+|||||||+.+|.++..+.++
T Consensus 6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 4889999 68842 1 1 255778999999999999999999999999888653
No 378
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00067 Score=77.33 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=31.2
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
.+++++|++++| .++|+||+|||||||+.+|..
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 579999999999 999999999999999999985
No 379
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.85 E-value=0.0013 Score=77.54 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCCEEEEeCCCCCCCH-HhHHHHHHHHHHHh-CCCeEEEEecCc
Q 000984 540 DPRILLLDEATSALDA-ESEKVVQEALDRIM-VNRTTVIVAHRL 581 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~-~~~~~i~~~i~~~~-~~~t~i~itH~~ 581 (1198)
++++|++||+..-.+. .+...+...+.... .++.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999887764 45666777776654 457888888874
No 380
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.84 E-value=0.00048 Score=81.47 Aligned_cols=57 Identities=28% Similarity=0.329 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC------------CCCCeEEECCeecCCcCHHHHhcceEEEcCCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1198)
+++|+|++|+|||||++.|+|... +..|.+.++|.++.-++...+++..++.+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e 250 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVE 250 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------C
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHH
Confidence 799999999999999999999853 677899999986654454444444444445443
No 381
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.83 E-value=0.0038 Score=67.90 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=27.9
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
++++++.+++| +.|+||+|+|||||+++|.+.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 44444444544 8999999999999999999986421 355554
No 382
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.81 E-value=0.00048 Score=77.01 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
++.+++|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999986
No 383
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.00021 Score=77.26 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=45.4
Q ss_pred ccccc-eEEeeCCCEEEEEcCCCCCHHHHHH-HHhcccCCCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1060 VFRDL-NLKIRAGKTVALVGESGSGKSTVVS-LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1060 vL~~i-s~~I~~GekvaIVG~SGSGKSTL~~-lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
.|+++ .--+++|+.++|+|++||||||++. ++....+...+.+++++.+- .-.+....+++++.+|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHH
Confidence 56666 5679999999999999999999954 55555555555666665432 112222234577877754
No 384
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.00044 Score=80.03 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=26.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1198)
.++..+.|+||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999876543
No 385
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.77 E-value=0.0012 Score=70.82 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=68.0
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA 487 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~~ 487 (1198)
+..|+.++++|||||||||++..++.......|. ...+.++.|.|... ..++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3568999999999999999887665332111121 12466777777543 345666664221100
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccchhcC----CCCC---CChHHHHHHhHHHhhccCCCEEEEeCCCC-CCCHHhHH
Q 000984 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGE----HGTQ---LSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEK 559 (1198)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~----~g~~---lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~ 559 (1198)
- + ...|+...... .... -+.|+-.+.. +.-+++-+++|+||+-. ++|.....
T Consensus 137 ~-----------~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P-----------G-------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T-----------T-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c-----------C-------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 0 00021111111 1111 2456655553 34689999999999976 46665443
Q ss_pred HHHHHHHHHhCCC
Q 000984 560 VVQEALDRIMVNR 572 (1198)
Q Consensus 560 ~i~~~i~~~~~~~ 572 (1198)
...+.+.....+.
T Consensus 197 ~~l~~i~~~~~~~ 209 (235)
T 3llm_A 197 VVLRDVVQAYPEV 209 (235)
T ss_dssp HHHHHHHHHCTTS
T ss_pred HHHHHHHhhCCCC
Confidence 3333343333343
No 386
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.76 E-value=0.00048 Score=73.71 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=31.3
Q ss_pred ccceeEEEe---CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 402 FSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 402 l~~i~l~i~---~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
|.++|+++. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 556666665 8999999999999999999999999887 666543
No 387
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.76 E-value=0.0005 Score=78.11 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=53.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE-EECCcccCCCChHHHHhhcceecccccccc-ccHHHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRAN 1138 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I-~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~-gTIreN 1138 (1198)
=+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+..+ ....+++++.+|+..+.. .++.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~~~~~e~~ 127 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQPDHGEQA 127 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEECCSSHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhhccCHHHH
Confidence 489999999999999999999999999888777764 788765432 235678899988876543 344444
No 388
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.74 E-value=0.0004 Score=79.39 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeec
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1198)
++..++|+|++|||||||++.|.|.+.+.+|+|.+.+.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 5779999999999999999999999988888887766544
No 389
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.73 E-value=0.00039 Score=72.52 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=31.5
Q ss_pred EEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 390 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|++ ..++++++|+..+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 455654 246899999988877 689999999999999999986
No 390
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.72 E-value=0.00064 Score=69.06 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.|+.++|+|++||||||+++.|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998743 55554
No 391
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.71 E-value=0.00022 Score=81.91 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=36.7
Q ss_pred CcccEEEeeeeEECCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 000984 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1198)
Q Consensus 1039 ~~G~I~f~nVsf~Y~~~~~~~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I 1102 (1198)
..|.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|++.-.+..|.+
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 3578999999998852 35899999987 9999999999999999988655444443
No 392
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.71 E-value=0.00041 Score=77.21 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=52.5
Q ss_pred EEEeeeeEECCCCCCcccccc-ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 000984 1043 IELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1198)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~-is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i 1112 (1198)
+..+++...|... -++ ++|+.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..-
T Consensus 75 ~~~~~l~~~~~~~-----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGD-----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCS-----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhccc-----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 4456677777532 156 888877 999999999999999999999999998889999988887654
No 393
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.70 E-value=0.00062 Score=69.94 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=54.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHh
Q 000984 1074 VALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1198)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~yd-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1198)
|.|+||||||||||++.|+.-++ |-.|+ +||+|--=++.+...+.+. ++-+|-.+.+..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~~- 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGNY- 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEETTEE-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHHH---cCCEEEEEEEcCce-
Confidence 68999999999999998875432 34554 6999999999999887654 77788777776663
Q ss_pred cCCCCCCCHHHHHHHHH
Q 000984 1141 YGKGGDATEAEIQAASE 1157 (1198)
Q Consensus 1141 ~g~~~~~tdeei~~Al~ 1157 (1198)
|| .+.+++.++++
T Consensus 78 YG----t~~~~v~~~l~ 90 (186)
T 1ex7_A 78 YG----STVASVKQVSK 90 (186)
T ss_dssp EE----EEHHHHHHHHH
T ss_pred ee----eecceeeehhh
Confidence 65 24455655554
No 394
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.68 E-value=0.002 Score=67.24 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
.-+.|.||+|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999877544
No 395
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.68 E-value=0.00062 Score=75.28 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=27.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.+++|+.++|+||+|||||||+..+.+...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999998665
No 396
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.67 E-value=0.00054 Score=78.56 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC-----------CCCCeEEECCcccCCCChHHHHhhcceecccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD-----------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd-----------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1198)
+|+|||++|||||||++.|.+... |..|.|.++|.++. +....|++.|.|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp 241 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIP 241 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCC
Confidence 399999999999999999998764 67799999997652 223456666644
No 397
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.63 E-value=0.00036 Score=73.25 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=26.3
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
..+|..++|+||+||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998774
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.62 E-value=0.00029 Score=74.36 Aligned_cols=41 Identities=32% Similarity=0.323 Sum_probs=36.1
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--eEEECC
Q 000984 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDG 447 (1198)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g 447 (1198)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+||
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 44678999999999999999999999999887778 777775
No 399
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.62 E-value=0.0008 Score=77.35 Aligned_cols=32 Identities=19% Similarity=0.556 Sum_probs=29.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
.++++++++++| .++|+||||||||||+.+|.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367889999999 78899999999999999987
No 400
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.59 E-value=0.0014 Score=70.19 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
++..+.|+||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999987643
No 401
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0002 Score=81.85 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=57.7
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC-CChHHHHhhcceeccccccc
Q 000984 1059 QVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK-LQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1059 ~vL~~is~~I~~Gek--vaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~-i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
.+++.++..|+.|+. +.++||+|+||||+++++.+...+..+.+.+.+.+..+ .+.+.+|+.+..++|....|
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~ 107 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIF 107 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSS
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccC
Confidence 489999999999998 99999999999999999999987777766555555543 45678888777666654333
No 402
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.55 E-value=0.00049 Score=70.99 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=36.8
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE-EECCcccC
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQ 1110 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I-~IDG~dI~ 1110 (1198)
+..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+||-+++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 3456789999999999999999999999988777765 57765543
No 403
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.52 E-value=0.0011 Score=68.26 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=26.7
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
No 404
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.51 E-value=0.0014 Score=64.92 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=25.2
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 899999999999999999873
No 405
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.50 E-value=0.0034 Score=70.96 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
.+..+.|.||+|+|||||++++.+.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
No 406
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.48 E-value=0.0094 Score=67.86 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=29.5
Q ss_pred ccccceeEE---EeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 400 QIFSGFSIS---ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 400 ~~l~~i~l~---i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
+.|+.+ +. +++|+.+.|.|++|||||||+..++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345554 33 78999999999999999999988876543
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.47 E-value=0.0014 Score=67.62 Aligned_cols=33 Identities=15% Similarity=0.466 Sum_probs=20.9
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000984 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++++++..++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788999988776 899999999999999999997
No 408
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.46 E-value=0.0011 Score=72.03 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=38.8
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1061 L~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
+++.+ ..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++.
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 44444 566788999999999999999999999875 3678999987754
No 409
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.44 E-value=0.0013 Score=77.99 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=47.8
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCCeEEECCcccCCCChHHHH
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQR--FYDPDAGHITLDGVEIQKLQLKWLR 1118 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~R--~ydp~~G~I~IDG~dI~~i~l~~LR 1118 (1198)
-+++++.+|..+.|+|.|||||||+++.|.. ++.+..|++.+.++|.+...+..+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~ 216 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE 216 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc
Confidence 4778888999999999999999999998876 6777779999999998877666554
No 410
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.0062 Score=67.23 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+.++.-+.|.||+|+|||||++++.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567789999999999999999999875
No 411
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.40 E-value=0.0017 Score=65.99 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++|.+++|+|++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 412
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.39 E-value=0.0045 Score=73.47 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=36.5
Q ss_pred HHHHHHhHHHhhccCCCEEEEeCCC-CCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 526 GQKQRIAIARAILKDPRILLLDEAT-SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~t-s~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
.|++....++..+++++++|+.-.. ..+... ...+.+.+++ .++.+|++.++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 4888888899999999977765443 334433 3445555543 478899999888754
No 413
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.39 E-value=0.0013 Score=75.41 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=35.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRF-----------YDPDAGHITLDGV 1107 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~-----------ydp~~G~I~IDG~ 1107 (1198)
.+..|.++||||++|+|||||++.|.+- .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 7788899888774
No 414
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.37 E-value=0.0011 Score=72.33 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=42.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccc
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qd 1127 (1198)
.++++++.+++| +.|+||+|+||||++++|.+..... -+.+++.++.+.-.....+++.-++|+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQ 99 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHHhhhhhHHHHHHHHHH
Confidence 456666666665 9999999999999999999987643 588999888665433333344444443
No 415
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.37 E-value=0.00072 Score=85.95 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=53.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccc
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1198)
|.+++|+.+.|+||+|+|||||+++|.+.+.+. -|.++|.++.........+++..++|++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHHH
Confidence 468899999999999999999999999987643 58999999888777888888899998873
No 416
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.35 E-value=0.001 Score=76.10 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=42.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcceeccccccccccHHHHHhcCCCCCCCHHHH
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~~tdeei 1152 (1198)
++||||++|+|||||+++|.+.. + ++.+++.. |+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999974 3 23333322 677777553 3567778
Q ss_pred HHHHHHcchHH
Q 000984 1153 QAASEMANAHK 1163 (1198)
Q Consensus 1153 ~~Al~~A~l~d 1163 (1198)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88887777654
No 417
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.31 E-value=0.0017 Score=66.08 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCccc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEI 1109 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~---~G~I~IDG~dI 1109 (1198)
..++|+|+||||||||++.|.+.+.+. -|.|..++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 579999999999999999999876543 37788887553
No 418
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.31 E-value=0.0015 Score=68.36 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~ 1110 (1198)
...|+|+|++||||||+++.|.+.+ |...+|+-++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcCc
Confidence 4689999999999999999998876 66778766653
No 419
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.29 E-value=0.0055 Score=68.39 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 000984 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1198)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~ 485 (1198)
++.++++..+.|.||+|||||||++++.+... .+-+.+++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~------------------------------------- 83 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP------------------------------------- 83 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH-------------------------------------
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH-------------------------------------
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCC-------------CC
Q 000984 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT-------------SA 552 (1198)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~t-------------s~ 552 (1198)
+=....+|+. .++.+-.+.+|--..|.++++||.- +.
T Consensus 84 ------------------------~l~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 133 (301)
T 3cf0_A 84 ------------------------ELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 133 (301)
T ss_dssp ------------------------HHHHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSC
T ss_pred ------------------------HHHhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcch
Q ss_pred CCHHhHHHHHHHHH--HHhCCCeEEEEecCcchhhcc
Q 000984 553 LDAESEKVVQEALD--RIMVNRTTVIVAHRLSTVRNA 587 (1198)
Q Consensus 553 lD~~~~~~i~~~i~--~~~~~~t~i~itH~~~~~~~~ 587 (1198)
........+.+.+. ....+..+|..||+.+.+..+
T Consensus 134 ~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~a 170 (301)
T 3cf0_A 134 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPA 170 (301)
T ss_dssp SCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGG
T ss_pred HHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChH
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.25 E-value=0.0003 Score=74.96 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.-.++|+||+||||||+.+.|.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998543
No 421
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.25 E-value=0.0026 Score=63.90 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
-+++|||++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999884
No 422
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.24 E-value=0.0024 Score=63.21 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=25.0
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh-cccC
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ-RFYD 1096 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~-R~yd 1096 (1198)
+.+++..+| ..+|+||+|||||||+.+|. -+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344555555 88999999999999999886 3443
No 423
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.001 Score=76.11 Aligned_cols=43 Identities=12% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcch
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1198)
+++++++|| ...++......+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6778888777777777765545556677776653
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.15 E-value=0.011 Score=66.23 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
...+.++||+|+||||++++|.+.+.+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766643
No 425
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.14 E-value=0.0011 Score=73.82 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=39.0
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeec
Q 000984 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1198)
Q Consensus 405 i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1198)
++++.+ |+.++++|++|+||||++..|.+.+.+..|+|.+.+.|.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 677766 999999999999999999999999988888887766554
No 426
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.12 E-value=0.0018 Score=67.83 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI 1109 (1198)
.+||+|++||||||+.+.|.++ |...||+-++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH
Confidence 5899999999999999999983 7777776443
No 427
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.12 E-value=0.014 Score=57.32 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1198)
+.+.-+.|.||+|+|||+++++|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 34567999999999999999999987654433
No 428
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.10 E-value=0.0025 Score=65.53 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.6
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 404 GFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999876
No 429
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.09 E-value=0.0023 Score=65.69 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=28.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF-----------YDPDAGHITLDGVE 1108 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~-----------ydp~~G~I~IDG~d 1108 (1198)
-+|+|||++|+|||||++.|.+- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999873 23345667776643
No 430
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.94 E-value=0.0031 Score=72.37 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
.+..|.+++|||++|+|||||+++|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999987
No 431
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.91 E-value=0.0027 Score=65.34 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=30.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeE
Q 000984 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1198)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1198)
.++|.++.|+|++||||||+.+.|.+.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999999887776665
No 432
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.85 E-value=0.0035 Score=69.47 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=40.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----ccCCCCCeEEECCc-ccCCCChHHHH
Q 000984 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FYDPDAGHITLDGV-EIQKLQLKWLR 1118 (1198)
Q Consensus 1060 vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R----~ydp~~G~I~IDG~-dI~~i~l~~LR 1118 (1198)
++++..+.+ .|.-++|+|+||+||||++..|.+ |...+...|...|- ++-..+.+.+|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~~~~l~g~~~~~l~ 196 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIE 196 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESSSSCEEEECCGGGT
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcCCCeEEEcCchhhh
Confidence 577777777 788999999999999999999987 55445555554443 34333334443
No 433
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.73 E-value=0.0038 Score=63.37 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
-..++|+|++|||||||++.|++.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999976543
No 434
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.72 E-value=0.0071 Score=60.64 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 435
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.71 E-value=0.0047 Score=63.28 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
||+|||++|+|||||++.|.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 436
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.71 E-value=0.00066 Score=70.96 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
No 437
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.68 E-value=0.017 Score=63.96 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=25.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
-+++|..+.|.||+|||||||+..+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999998754
No 438
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.66 E-value=0.014 Score=62.19 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=30.3
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCcchh
Q 000984 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1198)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1198)
.++.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999765 67766666666665433445677778776543
No 439
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.65 E-value=0.0036 Score=67.98 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=33.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeec
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1198)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678999999999999999999998774 35677887443
No 440
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.64 E-value=0.0076 Score=61.74 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-c----cCCCCC----eEEECCcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR-F----YDPDAG----HITLDGVE 1108 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R-~----ydp~~G----~I~IDG~d 1108 (1198)
||+|||++|+|||||++.+.+ - +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 799999999999999975544 3 667767 67888854
No 441
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.60 E-value=0.0022 Score=72.14 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=33.8
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhccc
Q 000984 1059 QVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1059 ~vL~~is~~I~~Gek--vaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+|+++++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999988754
No 442
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.58 E-value=0.0012 Score=75.74 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=35.7
Q ss_pred cccEEEEeEEEEcCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEE
Q 000984 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1198)
Q Consensus 381 ~g~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1198)
.+.|.++|++..|.. +.++++++|+| +|+|++|+|||||++.|++.-.+..|.+..
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~ 70 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPG 70 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccC
Confidence 456888888887742 45789999876 999999999999999999876555554433
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.57 E-value=0.0061 Score=63.61 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 000984 1073 TVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R 1093 (1198)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
No 444
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.57 E-value=0.004 Score=65.00 Aligned_cols=32 Identities=38% Similarity=0.501 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
..+++|+|++||||||+.+.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 4689999999999999999998876 5555654
No 445
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.55 E-value=0.0069 Score=63.31 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.4
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000984 403 SGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1198)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1198)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 99999999999999999886
No 446
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.53 E-value=0.0091 Score=64.07 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~~G 1100 (1198)
+|+|||++|+|||||++.|++-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999986655444
No 447
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.51 E-value=0.0063 Score=62.35 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+|..++|+|++||||||+.+.|.+-+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 448
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.51 E-value=0.0092 Score=67.77 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc-----------ccCCCCCeEEECC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQR-----------FYDPDAGHITLDG 1106 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R-----------~ydp~~G~I~IDG 1106 (1198)
|-++||||++|+|||||++.|.+ -.+|..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 3468888888776
No 449
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.51 E-value=0.006 Score=62.42 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 000984 414 TAALVGQSGSGKSTVISLIERF 435 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1198)
+++++|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 450
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.49 E-value=0.0065 Score=70.59 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=41.8
Q ss_pred ccccccceEEe---eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHhhcc
Q 000984 1058 VQVFRDLNLKI---RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1198)
Q Consensus 1058 ~~vL~~is~~I---~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1198)
.||+-|+ +.. ..+..++|+|+|||||||+++.|...+.+..+.|.+- |.. -+...+.+.++
T Consensus 20 ~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~--D~~-~~~~~~~~~~g 83 (392)
T 4ag6_A 20 GLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPE-REYKEMCRKLG 83 (392)
T ss_dssp CEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ESS-CCSHHHHHHTT
T ss_pred CeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE--eCC-cCHHHHHHHcC
Confidence 3566555 332 2677899999999999999999988777777888773 322 23444444443
No 451
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.41 E-value=0.059 Score=58.29 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+..-+.|.||+|+||||+++++.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999865
No 452
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.40 E-value=0.065 Score=62.28 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1198)
++..++++|++|+||||++..|...+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
No 453
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.35 E-value=0.023 Score=66.99 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=64.5
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECCeecCCcCHHHHhcceEEEcCCCCCCcccHHHH
Q 000984 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~N 479 (1198)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.......|. .+.|++=+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------------------~vl~~slE----------- 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------------------GVGIYSLE----------- 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------CEEEEESS-----------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------------------eEEEEECC-----------
Confidence 3566665458999999999999999999998887754322221 23333221
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHhHHHhhccCCCEEEEeCCCCC
Q 000984 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1198)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1198)
.+.+++..-... ... |.+..--.. ..|+..+.+|+.-|-..+.+.++++.|+|...
T Consensus 239 -------~~~~~l~~R~~~-----~~~----~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 239 -------MPAAQLTLRMMC-----SEA----RIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp -------SCHHHHHHHHHH-----HHT----TCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred -------CCHHHHHHHHHH-----HHc----CCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 223333221110 001 111110011 25899999999888777888889998876443
No 454
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.35 E-value=0.0052 Score=68.55 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
++.+|||||++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999975
No 455
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.30 E-value=0.0086 Score=68.11 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=45.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhccc-CC------CCCeEEECCcccCCCChHHHH---hhcceeccccccccccHH
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY-DP------DAGHITLDGVEIQKLQLKWLR---QQMGLVSQEPVLFNDTIR 1136 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~y-dp------~~G~I~IDG~dI~~i~l~~LR---~~IsiV~Qdp~LF~gTIr 1136 (1198)
-+++|+.+.|+||+||||||++..+..-. .| ..+.++||+... ++.+.++ +++++-++ .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~~-------~~l 188 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDHD-------AVL 188 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCHH-------HHH
Confidence 58999999999999999999998887642 22 345678887652 3444443 34444322 245
Q ss_pred HHHhcC
Q 000984 1137 ANIAYG 1142 (1198)
Q Consensus 1137 eNI~~g 1142 (1198)
+|+.+.
T Consensus 189 ~~l~~~ 194 (343)
T 1v5w_A 189 DNVLYA 194 (343)
T ss_dssp HTEEEE
T ss_pred hceeEe
Confidence 677654
No 456
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.30 E-value=0.0087 Score=60.80 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
|..+.|+|++||||||+.+.|..-+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987553
No 457
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.28 E-value=0.0076 Score=61.52 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc----cCCCCC----eEEECCcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF----YDPDAG----HITLDGVE 1108 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~----ydp~~G----~I~IDG~d 1108 (1198)
=+|+|||++|+|||||++.|.+- +.|+.| .+.+++..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 47999999999999999999865 456667 56666543
No 458
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.27 E-value=0.01 Score=67.00 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=33.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhccc-CC------CCCeEEECCcc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY-DP------DAGHITLDGVE 1108 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~y-dp------~~G~I~IDG~d 1108 (1198)
-+++|+.+.|.|++|+||||++..+..-. .+ ..+.++||...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 58999999999999999999998877643 33 34568887765
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.26 E-value=0.0085 Score=61.29 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 000984 414 TAALVGQSGSGKSTVISLIERFYDP 438 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1198)
+++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996533
No 460
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.25 E-value=0.0069 Score=60.94 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGV 1107 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ydp~~---G~I~IDG~ 1107 (1198)
..++|+|++||||||++..|.+.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999999998765432 45665543
No 461
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.24 E-value=0.016 Score=61.14 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhCCCeEEEEecCc-----------chhhccCEEEEEe
Q 000984 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-----------STVRNADMIAVIH 594 (1198)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~-----------~~~~~~d~i~~l~ 594 (1198)
+++++++||.-- ++.+.-+.+ ..+.. .+.+||++-|+. ..+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432223 22333 378999999932 2345689988875
No 462
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.24 E-value=0.05 Score=62.11 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+..-+.|.||+|+|||||++++....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999875
No 463
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.20 E-value=0.0028 Score=71.26 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=33.8
Q ss_pred ccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccC
Q 000984 400 QIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 400 ~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+++.+++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888999999999 9999999999999999999865
No 464
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.19 E-value=0.0028 Score=66.72 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYDPD 1098 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ydp~ 1098 (1198)
.|+|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988754
No 465
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.14 E-value=0.0098 Score=60.89 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
++..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 466
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.11 E-value=0.0091 Score=60.17 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
.++|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 467
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.10 E-value=0.0088 Score=62.38 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000984 414 TAALVGQSGSGKSTVISLIER 434 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1198)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.04 E-value=0.03 Score=64.43 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
..+..+.|.||+|+|||||++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998763
No 469
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.02 E-value=0.016 Score=65.89 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=42.4
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHhhcceeccccccc
Q 000984 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1198)
Q Consensus 1067 ~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1198)
-+++|+.+.|.||+|||||||+..+..-.....| -++||...- .+. ...+++++.+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe
Confidence 5889999999999999999998777654433344 456665431 222 2356678777765544
No 470
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.02 E-value=0.012 Score=59.82 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1198)
|..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 471
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.00 E-value=0.045 Score=62.72 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=29.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.+|..+.|.||+|+|||++++.+...+......+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45678999999999999999999998764434455544
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.98 E-value=0.013 Score=61.20 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=22.9
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 000984 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1198)
Q Consensus 1063 ~is~~I~~GekvaIVG~SGSGKSTL~~lL~ 1092 (1198)
+.++.+.+| ..+|+||+|||||||+.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555554 88999999999999998874
No 473
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.97 E-value=0.0074 Score=70.21 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~dI~~ 1111 (1198)
++..+++||++||||||++..|.+.+.+..++|.+-+.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999999999999987777643
No 474
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.95 E-value=0.043 Score=60.80 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 000984 413 TTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
..+.+.||+|+|||+|++++...+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467888999999999999999876
No 475
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.93 E-value=0.015 Score=64.27 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG~ 1107 (1198)
.|..+.|+|++||||||+++.|..-++ .|.+.||+-
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEech
Confidence 456799999999999999999987553 467888863
No 476
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.89 E-value=0.015 Score=64.37 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
.|..+.|+||+||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 456899999999999999999987653 36677765
No 477
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.89 E-value=0.014 Score=61.48 Aligned_cols=32 Identities=41% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 000984 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1198)
Q Consensus 1070 ~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G~I~IDG 1106 (1198)
.+-.|+|+|++||||||+++.|.++ |...||.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3457999999999999999999872 6666664
No 478
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.88 E-value=0.013 Score=60.12 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 000984 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1198)
Q Consensus 1071 GekvaIVG~SGSGKSTL~~lL~R~yd 1096 (1198)
|..+.|+|++||||||+++.|..-+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988553
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.87 E-value=0.12 Score=57.98 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+..-+.|.||+|+|||+|++++.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355679999999999999999999876
No 480
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.84 E-value=0.11 Score=57.80 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
++..+.|+||+|+|||++++++...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999888766
No 481
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.83 E-value=0.022 Score=58.28 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-c----CCCCCC----eEEECC
Q 000984 414 TAALVGQSGSGKSTVISLIER-F----YDPQAG----EVLIDG 447 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g-~----~~~~~G----~i~i~g 447 (1198)
+++|+|++|+|||||++.+.+ . +.|+.| .+.++|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 789999999999999976664 3 456655 444444
No 482
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.81 E-value=0.014 Score=60.59 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+|..|+|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 483
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.76 E-value=0.012 Score=60.29 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998654
No 484
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.73 E-value=0.014 Score=58.74 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 000984 1073 TVALVGESGSGKSTVVSLL 1091 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL 1091 (1198)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 485
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.72 E-value=0.015 Score=62.29 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1068 IRAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1068 I~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
-++|.+++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999986
No 486
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.037 Score=57.87 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998765
No 487
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.69 E-value=0.013 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
.+.|+|||||||+||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998765
No 488
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.66 E-value=0.0069 Score=62.77 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1066 ~~I~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.+++++..|+|+|++||||||+.+.|.+.+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345677899999999999999999998765
No 489
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.65 E-value=0.014 Score=60.13 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
++|..+.|+|++||||||+++.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998755
No 490
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.63 E-value=0.011 Score=60.24 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
..+..|.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998654
No 491
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.62 E-value=0.014 Score=60.46 Aligned_cols=22 Identities=50% Similarity=0.693 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 000984 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1073 kvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
+|+|||++|+|||||++.|.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999643
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.60 E-value=0.015 Score=67.39 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEEC
Q 000984 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1198)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1198)
.+..++|+|++||||||+++.|++.+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999998887888888763
No 493
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.54 E-value=0.024 Score=64.31 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------cCCCCCCeEEECC
Q 000984 412 GTTAALVGQSGSGKSTVISLIER-----------FYDPQAGEVLIDG 447 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g-----------~~~~~~G~i~i~g 447 (1198)
|-+++|||.+|+|||||++.|.+ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3356677777665
No 494
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.51 E-value=0.034 Score=55.98 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQR 1093 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R 1093 (1198)
++.-+|+++|++|+|||||++.|.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999975
No 495
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.51 E-value=0.017 Score=58.18 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 000984 414 TAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 496
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.49 E-value=0.016 Score=59.82 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 000984 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1198)
Q Consensus 1069 ~~GekvaIVG~SGSGKSTL~~lL~R~y 1095 (1198)
.++..++|+|++||||||+.+.|.+-+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
No 497
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.49 E-value=0.017 Score=62.38 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 000984 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1198)
Q Consensus 1072 ekvaIVG~SGSGKSTL~~lL~R~ 1094 (1198)
=+|+|||++|+|||||++.|++-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999999863
No 498
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.42 E-value=0.0098 Score=70.46 Aligned_cols=59 Identities=7% Similarity=0.151 Sum_probs=45.6
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHhh
Q 000984 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQ 1120 (1198)
Q Consensus 1059 ~vL~~is~~I~~GekvaIVG~SGSGKSTL~~lL~R~ydp~~G-~I~IDG~dI~~i~l~~LR~~ 1120 (1198)
+.|+++..-+++|+.+.|.||+|+||||++..+.+-.-+..| .+.+-+.+ .+.+.++++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r 250 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMR 250 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHH
Confidence 368888888999999999999999999999999887766445 66665443 344555544
No 499
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.42 E-value=0.19 Score=57.29 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 000984 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1198)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1198)
-+++|+.+.|.||+|||||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37899999999999999999998777544
No 500
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.39 E-value=0.018 Score=59.83 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCeEEECC
Q 000984 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1198)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1198)
..+++|+|++||||||+.+.|... |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 357999999999999999999985 6666654
Done!