BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000986
(1198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 142/362 (39%), Gaps = 67/362 (18%)
Query: 592 EREFKILNLLDFTSKRKRMSVIVRDE---DGQILLLCKGADSIIFDRLSK---NGR---M 642
+R KI+ + F S K I +E + + LL+ KGA I DR S NG +
Sbjct: 477 DRNPKIVEI-PFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPL 535
Query: 643 YEEATTKLLNEY---GEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHV 699
E+ N Y G G R L + L E +Y+ AD
Sbjct: 536 KEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNE--------GYPFDADE------- 580
Query: 700 SDMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLR 759
+ DL VG A+ D + VP + K AG+K+ ++TGD TA I ++
Sbjct: 581 PNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS 640
Query: 760 QGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYALIIEG---KT 816
+G + I A + NI + N P A A ++ G K
Sbjct: 641 EGNETI-------------EDIAARLNIPIGQVN----------PRDAKACVVHGSDLKD 677
Query: 817 LAYALEDDMKHHFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGM 876
L+ + DD+ H+ ++ R SP+QK ++ + G GDG ND
Sbjct: 678 LSTEVLDDILHYH-------TEIVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPA 729
Query: 877 IQEADIGI--GISGVEGMQAVMASDFSIAQFRFLERLL-VVHGHWCYKRIAQMICYFFYK 933
+++ADIG+ GISG + + A+D + F + V G + + + I Y
Sbjct: 730 LKKADIGVAMGISGSD--VSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTS 787
Query: 934 NI 935
NI
Sbjct: 788 NI 789
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG TI SDKTGTLT N+M
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRM 391
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/431 (23%), Positives = 163/431 (37%), Gaps = 80/431 (18%)
Query: 522 TLLLFFRILAICHTAIPELNEETGNLTYEAESPDEA-AFLVAAREFGFEFYRRTQSSVFI 580
T L RI +C+ A+ + N+E + A + D + + L+ E + +
Sbjct: 392 TWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKE------M 445
Query: 581 RERYPPKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLS--- 637
RERY + VE F N + + + R LL+ KGA I DR S
Sbjct: 446 RERYT---KIVEIPFNSTNKYQLSIHKNPNTAEPRH-----LLVMKGAPERILDRCSSIL 497
Query: 638 ---KNGRMYEEATTKLLNEY---GEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGAD 691
K + EE N Y G G R L + L + ++ +F + D
Sbjct: 498 IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPE-GFQFDTDDVNFPLD 556
Query: 692 REATLEHVSDMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINI 751
+L VG ++ D + VP + K AG+K+ ++TGD TA I
Sbjct: 557 --------------NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI 602
Query: 752 GFACSLLRQGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYALI 811
++ +G E V+D SQ+ +P A A +
Sbjct: 603 AKGVGIISEG------------------NETVEDIAARLNIPVSQV-----NPRDAKACV 639
Query: 812 IEGKTL----AYALEDDMKHHFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAI 867
+ G L + L+D +K+H ++ R SP+QK ++ + G
Sbjct: 640 VHGSDLKDMTSEQLDDILKYH--------TEIVFARTSPQQKLIIVEGCQR-QGAIVAVT 690
Query: 868 GDGANDVGMIQEADIGI--GISGVEGMQAVMASDFSIAQFRFLERLL-VVHGHWCYKRIA 924
GDG ND ++ADIG+ GI+G + + A+D + F + V G + +
Sbjct: 691 GDGVNDSPASKKADIGVAMGIAGSDVSK--QAADMILLDDNFASIVTGVEEGRLIFDNLK 748
Query: 925 QMICYFFYKNI 935
+ I Y NI
Sbjct: 749 KSIAYTLTSNI 759
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG TI SDKTGTLT N+M
Sbjct: 340 ETLGSTSTICSDKTGTLTQNRM 361
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 154 EKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKVK 202
E++ VGD+V+V+ PADL +S++ C V+ +L GE+ + +
Sbjct: 158 EEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQTR 202
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/431 (23%), Positives = 163/431 (37%), Gaps = 80/431 (18%)
Query: 522 TLLLFFRILAICHTAIPELNEETGNLTYEAESPDEA-AFLVAAREFGFEFYRRTQSSVFI 580
T L RI +C+ A+ + N+E + A + D + + L+ E + +
Sbjct: 386 TWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKE------M 439
Query: 581 RERYPPKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLS--- 637
RERY + VE F N + + + R LL+ KGA I DR S
Sbjct: 440 RERYT---KIVEIPFNSTNKYQLSIHKNPNTAEPRH-----LLVMKGAPERILDRCSSIL 491
Query: 638 ---KNGRMYEEATTKLLNEY---GEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGAD 691
K + EE N Y G G R L + L + ++ +F + D
Sbjct: 492 IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPE-GFQFDTDDVNFPLD 550
Query: 692 REATLEHVSDMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINI 751
+L VG ++ D + VP + K AG+K+ ++TGD TA I
Sbjct: 551 --------------NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI 596
Query: 752 GFACSLLRQGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYALI 811
++ +G E V+D SQ+ +P A A +
Sbjct: 597 AKGVGIISEG------------------NETVEDIAARLNIPVSQV-----NPRDAKACV 633
Query: 812 IEGKTL----AYALEDDMKHHFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAI 867
+ G L + L+D +K+H ++ R SP+QK ++ + G
Sbjct: 634 VHGSDLKDMTSEQLDDILKYH--------TEIVFARTSPQQKLIIVEGCQR-QGAIVAVT 684
Query: 868 GDGANDVGMIQEADIGI--GISGVEGMQAVMASDFSIAQFRFLERLL-VVHGHWCYKRIA 924
GDG ND ++ADIG+ GI+G + + A+D + F + V G + +
Sbjct: 685 GDGVNDSPASKKADIGVAMGIAGSDVSK--QAADMILLDDNFASIVTGVEEGRLIFDNLK 742
Query: 925 QMICYFFYKNI 935
+ I Y NI
Sbjct: 743 KSIAYTLTSNI 753
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 154 EKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKVK 202
E++ VGD+V+V+ PADL +S++ C V+ +L GE+ + +
Sbjct: 152 EEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQTR 196
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 139/624 (22%), Positives = 213/624 (34%), Gaps = 142/624 (22%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG I SDKTGTLT NQM K + G +L + ++
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDRIDG------DLCLLNEFSV--------- 384
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
+GS E + ND ++ D L+ I
Sbjct: 385 -------TGSTYAPEGEVLKND---------------------KPVRSGQYDGLVELATI 416
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQ 589
A+C+ + + NE G E+ + A + + F R S V ER
Sbjct: 417 CALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNS 473
Query: 590 PVEREFKILNLLDFTSKRKRMSVIVRDEDGQIL----LLCKGADSIIFDRLS----KNGR 641
+ + K L+F+ RK MSV + + KGA + DR + R
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 533
Query: 642 M-----YEEATTKLLNEYGEA--GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREA 694
+ +E ++ E+G LR LALA + K + + D
Sbjct: 534 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTP-----------PKREEMVLDDSTK 582
Query: 695 TLEHVSDMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFA 754
+E+ E DL VG + D +K V I AG+++ ++TGD TAI I
Sbjct: 583 FMEY-----ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI--- 634
Query: 755 CSLLRQGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYALIIEG 814
++I I N D +A G
Sbjct: 635 -------CRRIGIFGENEDVADRAYT---------------------------------G 654
Query: 815 KTLAYALEDDMKHHFLGLAVECASVICC--RVSPKQKALVTRLVKEGTGKTTLAIGDGAN 872
+ DD+ L E CC RV P K+ + + + + T GDG N
Sbjct: 655 REF-----DDLP---LAEQREACRRACCFARVEPTHKSKIVEYL-QSFDEITAMTGDGVN 705
Query: 873 DVGMIQEADIGIGISGVEGMQAVMASDFSIAQFRFLERLLVV-HGHWCYKRIAQMICYFF 931
D +++A+IGI + G A AS+ +A F + V G Y + Q I Y
Sbjct: 706 DAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 764
Query: 932 YKNIAFGLTLFYFEAFASFSGQSVYNDWYMLSFNVVLTALPVISLGVFEQDVSSEICLQF 991
N+ + +F A+ +L N+V LP +LG D+ +
Sbjct: 765 SSNVGEVVCIFL---TAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLD---IMDR 818
Query: 992 PALYQQGPRN---LFFDWYRIFGW 1012
P + P LFF + I G+
Sbjct: 819 PPRTPKEPLISGWLFFRYMAIGGY 842
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In The
Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In The
Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In The
Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg In
The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg In
The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp And
Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp And
Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 147/634 (23%), Positives = 219/634 (34%), Gaps = 161/634 (25%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG I SDKTGTLT NQM K + G + + + +I
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDG------DFCSLNEFSI--------- 385
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
+GS E + ND + I+ F D L+ I
Sbjct: 386 -------TGSTYAPEGEVLKND-----KPIRSGQF----------------DGLVELATI 417
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQ 589
A+C+ + + NE G E+ + A + + F R S V ER
Sbjct: 418 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNS 474
Query: 590 PVEREFKILNLLDFTSKRKRMSVIV------RDEDGQILLLCKGADSIIFDRLS----KN 639
+ + K L+F+ RK MSV R G + + KGA + DR +
Sbjct: 475 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGT 533
Query: 640 GRM-----YEEATTKLLNEYGEA--GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADR 692
R+ +E ++ E+G LR LALA +
Sbjct: 534 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR------------------E 575
Query: 693 EATLEHVSDMME--KDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAIN 750
E L+ S ME DL VG + D +K V I AG+++ ++TGD N
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD------N 629
Query: 751 IGFACSLLRQGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYAL 810
G A ++ R+ I I N E V D AY
Sbjct: 630 KGTAIAICRR----IGIFGEN---------EEVADR--------------------AYT- 655
Query: 811 IIEGKTLAYALEDDMKHHFLGLAVECASVICC--RVSPKQKALVTRLVKEGTGKTTLAIG 868
G+ DD+ L E CC RV P K+ + + + + T G
Sbjct: 656 ---GREF-----DDLP---LAEQREACRRACCFARVEPSHKSKIVEYL-QSYDEITAMTG 703
Query: 869 DGANDVGMIQEADIGIGISGVEGMQAVMASDFSIAQFRFLERLLVV-HGHWCYKRIAQMI 927
DG ND +++A+IGI + G A AS+ +A F + V G Y + Q I
Sbjct: 704 DGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFI 762
Query: 928 CYFFYKNIAFGLTLFYFEAFASFSGQSVYNDWYMLSFNVVLTALPVISLGVFEQDVSSEI 987
Y N+ + +F A+ +L N+V LP +LG D+
Sbjct: 763 RYLISSNVGEVVCIFL---TAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLD--- 816
Query: 988 CLQFPALYQQGPRN---------LFFDWYRIFGW 1012
+ + PR+ LFF + I G+
Sbjct: 817 ------IMDRPPRSPKEPLISGWLFFRYMAIGGY 844
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The Serca
Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound To
Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound To
Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 147/634 (23%), Positives = 219/634 (34%), Gaps = 161/634 (25%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG I SDKTGTLT NQM K + G + + + +I
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDG------DFCSLNEFSI--------- 384
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
+GS E + ND + I+ F D L+ I
Sbjct: 385 -------TGSTYAPEGEVLKND-----KPIRSGQF----------------DGLVELATI 416
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQ 589
A+C+ + + NE G E+ + A + + F R S V ER
Sbjct: 417 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNS 473
Query: 590 PVEREFKILNLLDFTSKRKRMSVIV------RDEDGQILLLCKGADSIIFDRLS----KN 639
+ + K L+F+ RK MSV R G + + KGA + DR +
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGT 532
Query: 640 GRM-----YEEATTKLLNEYGEA--GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADR 692
R+ +E ++ E+G LR LALA +
Sbjct: 533 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR------------------E 574
Query: 693 EATLEHVSDMME--KDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAIN 750
E L+ S ME DL VG + D +K V I AG+++ ++TGD N
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD------N 628
Query: 751 IGFACSLLRQGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYAL 810
G A ++ R+ I I N E V D AY
Sbjct: 629 KGTAIAICRR----IGIFGEN---------EEVADR--------------------AYT- 654
Query: 811 IIEGKTLAYALEDDMKHHFLGLAVECASVICC--RVSPKQKALVTRLVKEGTGKTTLAIG 868
G+ DD+ L E CC RV P K+ + + + + T G
Sbjct: 655 ---GREF-----DDLP---LAEQREACRRACCFARVEPSHKSKIVEYL-QSYDEITAMTG 702
Query: 869 DGANDVGMIQEADIGIGISGVEGMQAVMASDFSIAQFRFLERLLVV-HGHWCYKRIAQMI 927
DG ND +++A+IGI + G A AS+ +A F + V G Y + Q I
Sbjct: 703 DGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFI 761
Query: 928 CYFFYKNIAFGLTLFYFEAFASFSGQSVYNDWYMLSFNVVLTALPVISLGVFEQDVSSEI 987
Y N+ + +F A+ +L N+V LP +LG D+
Sbjct: 762 RYLISSNVGEVVCIFL---TAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLD--- 815
Query: 988 CLQFPALYQQGPRN---------LFFDWYRIFGW 1012
+ + PR+ LFF + I G+
Sbjct: 816 ------IMDRPPRSPKEPLISGWLFFRYMAIGGY 843
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 146/634 (23%), Positives = 218/634 (34%), Gaps = 161/634 (25%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG I S KTGTLT NQM K + G + + + +I
Sbjct: 340 ETLGCTSVICSXKTGTLTTNQMSVCKMFIIDKVDG------DFCSLNEFSI--------- 384
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
+GS E + ND + I+ F D L+ I
Sbjct: 385 -------TGSTYAPEGEVLKND-----KPIRSGQF----------------DGLVELATI 416
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQ 589
A+C+ + + NE G E+ + A + + F R S V ER
Sbjct: 417 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNS 473
Query: 590 PVEREFKILNLLDFTSKRKRMSVIV------RDEDGQILLLCKGADSIIFDRLS----KN 639
+ + K L+F+ RK MSV R G + + KGA + DR +
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGT 532
Query: 640 GRM-----YEEATTKLLNEYGEA--GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADR 692
R+ +E ++ E+G LR LALA +
Sbjct: 533 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR------------------E 574
Query: 693 EATLEHVSDMME--KDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAIN 750
E L+ S ME DL VG + D +K V I AG+++ ++TGD N
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD------N 628
Query: 751 IGFACSLLRQGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYAL 810
G A ++ R+ I I N E V D AY
Sbjct: 629 KGTAIAICRR----IGIFGEN---------EEVADR--------------------AYT- 654
Query: 811 IIEGKTLAYALEDDMKHHFLGLAVECASVICC--RVSPKQKALVTRLVKEGTGKTTLAIG 868
G+ DD+ L E CC RV P K+ + + + + T G
Sbjct: 655 ---GREF-----DDLP---LAEQREACRRACCFARVEPSHKSKIVEYL-QSYDEITAMTG 702
Query: 869 DGANDVGMIQEADIGIGISGVEGMQAVMASDFSIAQFRFLERLLVV-HGHWCYKRIAQMI 927
DG ND +++A+IGI + G A AS+ +A F + V G Y + Q I
Sbjct: 703 DGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFI 761
Query: 928 CYFFYKNIAFGLTLFYFEAFASFSGQSVYNDWYMLSFNVVLTALPVISLGVFEQDVSSEI 987
Y N+ + +F A+ +L N+V LP +LG D+
Sbjct: 762 RYLISSNVGEVVCIFL---TAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLD--- 815
Query: 988 CLQFPALYQQGPRN---------LFFDWYRIFGW 1012
+ + PR+ LFF + I G+
Sbjct: 816 ------IMDRPPRSPKEPLISGWLFFRYMAIGGY 843
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 112/294 (38%), Gaps = 66/294 (22%)
Query: 669 LDESEYSAWNSEFQKAKSSIGADREATLEHVSDMM-EKD------------------LIL 709
LDE W FQ A S+G E L + EKD L
Sbjct: 540 LDEQ----WREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSF 595
Query: 710 VGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITA 769
G ++ D + VP + K AG+++ ++TGD TA I + ++ +G + + A
Sbjct: 596 AGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIA 655
Query: 770 ----LNSDSVG-KAAKEAVKDNILMQITNASQMIK-LERDPHAAYALIIEGKTLAYALED 823
+ D V K A+ V + + ++ + S++++ L P +A
Sbjct: 656 ARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFA-------------- 701
Query: 824 DMKHHFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIG 883
R SP+QK ++ + G GDG ND +++ADIG
Sbjct: 702 -------------------RTSPQQKLVIVESCQR-LGAIVAVTGDGVNDSPALKKADIG 741
Query: 884 IGISGVEGMQAVM-ASDFSIAQFRFLERLL-VVHGHWCYKRIAQMICYFFYKNI 935
+ + G+ G A A+D + F + V G + + + I Y KNI
Sbjct: 742 VAM-GIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNI 794
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG I SDKTGTLT N+M
Sbjct: 375 ETLGSTSVICSDKTGTLTQNRM 396
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQN 466
EE+ +D + SDKTGTLT N++ K V GV +V L AA MA +E Q+
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAA--MASRVENQD 372
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 31/164 (18%)
Query: 598 LNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSKNGRMYEEATTKLLNEYGEA 657
++ L F KR ++ D G + KGA I + L+K + ++++Y E
Sbjct: 395 VHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE-LAKASNDLSKKVLSIIDKYAER 453
Query: 658 GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHVSDMMEKDLILVGATAVED 717
GLR+LA+A + + E K K S GA E VG + D
Sbjct: 454 GLRSLAVARQVVPE-----------KTKESPGAPWE---------------FVGLLPLFD 487
Query: 718 KLQKGVPQCIDKLAQAGLKIWVLTGDKM----ETAINIGFACSL 757
+ + I + G+ + ++TGD++ ET +G ++
Sbjct: 488 PPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNM 531
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 583 RYPPKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSKNGRM 642
+Y P+ + V ++K+L F K++ +V G+ + KGA + + ++ +
Sbjct: 431 KYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPI 490
Query: 643 YEEATTKLLN---EYGEAGLRTLALAYKQLDES 672
EE N E+ G R+L +A K+ + S
Sbjct: 491 PEEVDQAYKNKVAEFATRGFRSLGVARKRGEGS 523
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAA 454
E L V+ + SDKTGTLT N++ T GV P ++ L A
Sbjct: 367 ESLAGVEILCSDKTGTLTKNKLSLHDPY---TVAGVDPEDLMLTA 408
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 703 MEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETA 748
M D V VED ++ P+ I +L Q+G++I +LTGD TA
Sbjct: 539 MAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
>pdb|2WTE|A Chain A, The Structure Of The Crispr-Associated Protein, Csa3, From
Sulfolobus Solfataricus At 1.8 Angstrom Resolution.
pdb|2WTE|B Chain B, The Structure Of The Crispr-Associated Protein, Csa3, From
Sulfolobus Solfataricus At 1.8 Angstrom Resolution
Length = 244
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 593 REFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIF--DRLSKNGRMYEEATTKL 650
R L LL RKR +V VRDE G G+ I F + + R Y KL
Sbjct: 105 RXINTLILLGIIVSRKRFTVYVRDEGG-------GSRVISFNDNTIRALXRDYSREEXKL 157
Query: 651 LN---EYGEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSI----GADREATLEHV 699
LN E G+ LA K LD+SE + N + K I G DR+ L +
Sbjct: 158 LNVLYETKGTGITELA---KXLDKSEKTLINKIAELKKFGILTQKGKDRKVELNEL 210
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ DKTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFDKTGTLT 40
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 603 FTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSK---NGRMYE------EATTKLLNE 653
F +R+RMSV+V + L+CKGA I + S+ NG + ++ +
Sbjct: 64 FDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDT 123
Query: 654 YGEAGLRTLALAYKQLDESEYSAWNSEFQKAKSS 687
GLR +A+A K L A ++Q+A S
Sbjct: 124 LNRQGLRVVAVATKYL-----PAREGDYQRADES 152
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 586 PKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQIL 622
PK + E + K+ + +D+ +K + +IVRDEDG IL
Sbjct: 144 PKDELKELKQKVTSKIDYGNKILELDLIVRDEDGNIL 180
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 864 TLAIGDGANDVGMIQEADIGIGISGVEGMQAVMASDFS 901
T+A+GDGAND+ M+ A +GI + ++ V + S
Sbjct: 342 TVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLS 379
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ +KTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFEKTGTLT 40
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ +KTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFNKTGTLT 40
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 24/100 (24%)
Query: 649 KLLNEYGEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHVSDMMEKDLI 708
+L+ ++G A + LA ++L+ ++AK+++ R +E
Sbjct: 118 RLMEDFGVAVSNEVELALEKLE-----------REAKTAVIVARNGRVE----------- 155
Query: 709 LVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETA 748
G AV D L++ + +L + G+K+ ++TGD +A
Sbjct: 156 --GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSA 193
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 24/100 (24%)
Query: 649 KLLNEYGEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHVSDMMEKDLI 708
+L+ ++G A + LA ++L+ ++AK+++ R +E
Sbjct: 118 RLMEDFGVAVSNEVELALEKLE-----------REAKTAVIVARNGRVE----------- 155
Query: 709 LVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETA 748
G AV D L++ + +L + G+K+ ++TGD +A
Sbjct: 156 --GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSA 193
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 849 KALVTRLVKEGTGKT---TLAIGDGANDVGMIQEADIGIGISGVE 890
KAL ++ E G T +AIGDG ND+ MI+ A +G+ + +
Sbjct: 198 KALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQ 242
>pdb|3FRP|A Chain A, Crystal Structure Of Cobra Venom Factor, A Co-Factor For
C3- And C5 Convertase Cvfbb
pdb|3HRZ|A Chain A, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|A Chain A, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|F Chain F, Cobra Venom Factor (Cvf) In Complex With Human Factor B
Length = 627
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 783 VKDNILMQITNASQMIKLERDPHAAYALIIEGKTLAYALEDDMK 826
VK + L+Q+ A+ IKLE DP A L+ K + Y L D K
Sbjct: 528 VKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDKAV-YVLNDKYK 570
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,852,978
Number of Sequences: 62578
Number of extensions: 1376440
Number of successful extensions: 2845
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2772
Number of HSP's gapped (non-prelim): 77
length of query: 1198
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1088
effective length of database: 8,089,757
effective search space: 8801655616
effective search space used: 8801655616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)