BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000987
(1198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4IN69|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B
OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1
Length = 1275
Score = 1407 bits (3643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 742/1219 (60%), Positives = 894/1219 (73%), Gaps = 102/1219 (8%)
Query: 1 MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTR 60
MNSIDD+L+LS+ FG++ E G +L+ FVFS+VW+LLDASLD+EGLLE S+K KWP+
Sbjct: 132 MNSIDDILHLSETFGVQDQEPGSILLAFVFSIVWELLDASLDEEGLLELTSNKRSKWPSS 191
Query: 61 PQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWG 120
P DM++DG++ + KR+E+H+ L +ANT MAIELI EFLQNKVTSRIL+LA NM
Sbjct: 192 PHDMDLDGLENSV-KRNENHDALEKANTEMAIELIQEFLQNKVTSRILHLASQNM----- 245
Query: 121 GFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLM 180
+SKT P+ E HA+ GS +
Sbjct: 246 ----------------------------------------ESKTIPRGEFHAIVSSGSKL 265
Query: 181 SLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFL 240
+L TS SALWLPIDLF ED MDGTQ AA SAVE LTGLVKALQ N T+WHD FL
Sbjct: 266 AL------TSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAANSTSWHDAFL 319
Query: 241 G-------------------LWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVAD 281
++ L +L ERDP EGPVPR D+ LC++LSVT L VA+
Sbjct: 320 ALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDTFLCVLLSVTPLAVAN 379
Query: 282 IIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQ 341
IIEEEES+ ID+T SPSN K+K+ G+ R+ L+ SLQ LGD+E +LTPP V+S+ANQ
Sbjct: 380 IIEEEESQWIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYESLLTPPRSVQSVANQ 437
Query: 342 AAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIAR-NLLDTSAYLWPGY 400
AAAKAIMFISG+T NG YE+ SM+ A+ C C R +L ++ G
Sbjct: 438 AAAKAIMFISGITNSNGSYENTSMSESASGC-----------CKVRFSLFTLKMFVVMGV 486
Query: 401 VNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSD 460
+ C+I S WS +MKGSPLTPSLTN+L+ TPASSLAEIEK+YE+A GS+
Sbjct: 487 Y-------LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSE 535
Query: 461 DEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLV 520
DEKI A++LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS SHLI A LN LLV
Sbjct: 536 DEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLINSAPFLNVLLV 595
Query: 521 GISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTI 580
GIS +DC+ IFSLHG VPLLA ALMPICE FGS +PN +WTL +GE S +AVFS AFT+
Sbjct: 596 GISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTGELISSHAVFSTAFTL 655
Query: 581 LVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIK 640
L+RLWRF PPL+ + D+P V Q SPEYLLLVRN +L FG SPKD+M +RFSK I
Sbjct: 656 LLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVID 715
Query: 641 FSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPL 700
S DPIFMDSFP+LK+WYRQ++EC+AS L+ L G+ VH IVD+LL+ MF+K N+ G+
Sbjct: 716 ISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQS 775
Query: 701 TSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKE 760
+ +SGS++ S SG +D S +LK+PAWDILEA PFVLDAAL ACAHG LSPRELATGLK
Sbjct: 776 LTPSSGSSSLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKI 835
Query: 761 LSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDV 820
L+D LPATL T+VSYFS+EVTRGLWKP MNGTDWPSPA NL+S+EQQI+KILAATGVDV
Sbjct: 836 LADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDV 895
Query: 821 PTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVA 880
P + G S ATLPLPLAALVSLTIT+KLDKA++RFL LVG L SLA++CPWPCMPIV
Sbjct: 896 PRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVT 955
Query: 881 SLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLT-SSHNYSNGGVGALL 939
SLW QKVKRW+DFL+FSAS TVFH+N DAV+QLL+SCFT TLGLT +S S GGVGALL
Sbjct: 956 SLWTQKVKRWSDFLIFSASRTVFHHNRDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALL 1015
Query: 940 GHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLE 999
GHGFGS +SGGIS PGILY++VHRS+RDVMF+ EEILS+LM V+ IA+ LP + E
Sbjct: 1016 GHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRELPAGQAE 1075
Query: 1000 KLKKTKHGMRY--GQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISV 1057
KLKKTK G RY GQVSL+ AM R KLAASLGASLVWISGG +LV +L+ ETLPSWFISV
Sbjct: 1076 KLKKTKDGSRYGIGQVSLSLAMRRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISV 1135
Query: 1058 HGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASA 1117
HG E E G MV ML GYALAYFA+ + FAWGVDS ASK+RP VL HLEF+ SA
Sbjct: 1136 HG---EEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSYPASKRRPRVLWLHLEFMVSA 1192
Query: 1118 LDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTL 1177
L+ KIS+GCD ATW+AYV+GFV+L+V CTP W+LE++V+ +KRLSK LRQW+E++LAL L
Sbjct: 1193 LEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALAL 1252
Query: 1178 LGVGGVGAMGAAAQLIVES 1196
L GG+G MGAA +LIVE+
Sbjct: 1253 LCAGGLGTMGAATELIVET 1271
>sp|Q9LUG9|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A
OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
Length = 1309
Score = 1380 bits (3573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/1197 (58%), Positives = 889/1197 (74%), Gaps = 23/1197 (1%)
Query: 1 MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTR 60
M S+ ++L LS++F L + GVLLVEFVF +V QLLDA+L DEGLLE + D + +W +
Sbjct: 131 MISVSNILRLSELFDLDTSKPGVLLVEFVFKMVSQLLDAALSDEGLLELSQDSSSQWLVK 190
Query: 61 PQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWG 120
QDMEID + + ++++ E L NT MAIELI EFL+N V +R+LYL N S W
Sbjct: 191 SQDMEIDAPERY-NEKTGSLEKLQSLNTIMAIELIAEFLRNTVIARLLYLVSSNRASKWH 249
Query: 121 GFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLM 180
F+++++LL S+AL++SKV+ LLQL S+ R SK ++ +A+ GSL
Sbjct: 250 EFVQKVQLLGENSSALKHSKVLNSGDLLQLISNRRFGYSYDSKVTSARKSNAIVDFGSLS 309
Query: 181 SLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFL 240
S AG C+G S S+LWLP+DL EDAMDG QV TSA+EI+TGL K L+ +NG+TWHDTFL
Sbjct: 310 SYAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEINGSTWHDTFL 369
Query: 241 GLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSN 300
GLWIAALRL+QRERDP EGP+PR+D+ LCM L + L VA++IEE + E + E
Sbjct: 370 GLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGKYESVME------- 422
Query: 301 LPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYY 360
+ R DLVTSLQ+LGDF +L PP V S AN+AA KAI+F+SG VG +
Sbjct: 423 ---------KLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLSGGNVGKSCF 473
Query: 361 ESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGW 420
+ ++M + +C GNMRHLIVEACIARN+LD SAY WPGYVN NQ+P S+ ++ W
Sbjct: 474 DVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGR-INQIPQSLPNEVPCW 532
Query: 421 SSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWS 480
SS +KG+PL ++ N LV PASSLAE+EK++E+AV GSDDEKI AATVLCGASL RGW+
Sbjct: 533 SSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLCGASLTRGWN 592
Query: 481 VQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLL 540
+QE+T+ ++ +LLSPPVPADYS +E+HLIGYA +LN ++VGI SVD IQIFSLHG VP L
Sbjct: 593 IQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIFSLHGMVPQL 652
Query: 541 AAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMP 600
A +LMPICE FGS P+ SWTL SGE S Y+VFSNAFT+L++LWRF+ PP+E D+P
Sbjct: 653 ACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVP 712
Query: 601 LVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKF-STDPIFMDSFPKLKRWYR 659
V SQL+PE+LL VRNS L S +D+ + KR S+ + S P+F+DSFPKLK WYR
Sbjct: 713 TVGSQLTPEHLLSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQPVFVDSFPKLKVWYR 771
Query: 660 QNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVS 719
Q++ CIA+TL+GL HG+ VH V+ALL F K+ S T L SG+++SSG+ ED +
Sbjct: 772 QHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKVRGSQT-LNPVNSGTSSSSGAASEDSN 830
Query: 720 IKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAE 779
I+ + PAWDIL+A P+V+DAAL AC HGRLSPR+LATGLK+L+D LPA+LAT+VSYFSAE
Sbjct: 831 IRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLATIVSYFSAE 890
Query: 780 VTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAA 839
V+RG+WKP FMNG DWPSPATNLS++E+ I KILA TGVD+P++A GG+SPATLPLPLAA
Sbjct: 891 VSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLPLAA 950
Query: 840 LVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSAS 899
VSLTIT+K+DKAS+RFL L G L LA+ CPWPCMPIVASLW QK KRW DFLVFSAS
Sbjct: 951 FVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSAS 1010
Query: 900 GTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGIL 959
TVF +N DAV+QLL++CF++TLGL ++ ++GGVGALLGHGFGSHF GGISPV PGIL
Sbjct: 1011 RTVFLHNQDAVIQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGIL 1070
Query: 960 YLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAM 1019
YLR++R++RD + + EEILS+L+H V DIA L +EKLEKLK K+G RYGQ SLA AM
Sbjct: 1071 YLRMYRALRDTVSVSEEILSLLIHSVEDIAQNRLSKEKLEKLKTVKNGSRYGQSSLATAM 1130
Query: 1020 TRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYAL 1079
T+ KLAASL ASLVW++GG +VH L+ ET+PSWF+S +E G S +V L G+AL
Sbjct: 1131 TQVKLAASLSASLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQGPSD-LVAELRGHAL 1189
Query: 1080 AYFAVFCATFAWGVD-SESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGF 1138
AYF V C WGVD S + ++R +LG+HLEF+ASALD KISVGC+ ATWR Y+SG
Sbjct: 1190 AYFVVLCGALTWGVDSRSSASKRRRQAILGSHLEFIASALDGKISVGCETATWRTYISGL 1249
Query: 1139 VTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVE 1195
V+L+V C P W+ EI+ + LK LS GLR+W ++ELA+ LL +GG+ M AA I+
Sbjct: 1250 VSLMVSCLPLWVTEIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLKTMDYAADFIIH 1306
>sp|Q57E65|SYC_BRUAB Cysteine--tRNA ligase OS=Brucella abortus biovar 1 (strain 9-941)
GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 746 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q2YN22|SYC_BRUA2 Cysteine--tRNA ligase OS=Brucella abortus (strain 2308) GN=cysS
PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 746 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|B2S4T7|SYC_BRUA1 Cysteine--tRNA ligase OS=Brucella abortus (strain S19) GN=cysS PE=3
SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 746 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q8G1N5|SYC_BRUSU Cysteine--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 746 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|B0CL02|SYC_BRUSI Cysteine--tRNA ligase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 746 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q8YG89|SYC_BRUME Cysteine--tRNA ligase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 746 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|C0RI19|SYC_BRUMB Cysteine--tRNA ligase OS=Brucella melitensis biotype 2 (strain ATCC
23457) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 746 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|A9MA50|SYC_BRUC2 Cysteine--tRNA ligase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 746 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|A5VPL3|SYC_BRUO2 Cysteine--tRNA ligase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=cysS PE=3 SV=1
Length = 506
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 748 RLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 799
R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 165 RKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,210,940
Number of Sequences: 539616
Number of extensions: 17624094
Number of successful extensions: 44837
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 44807
Number of HSP's gapped (non-prelim): 22
length of query: 1198
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1069
effective length of database: 121,958,995
effective search space: 130374165655
effective search space used: 130374165655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)