Query 000987
Match_columns 1198
No_of_seqs 44 out of 46
Neff 2.7
Searched_HMMs 46136
Date Thu Mar 28 12:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11277 Med24_N: Mediator com 70.9 69 0.0015 41.9 14.5 462 86-777 153-629 (990)
2 TIGR00380 cobD cobalamin biosy 37.1 15 0.00032 41.7 0.9 48 755-802 199-246 (305)
3 PF03186 CobD_Cbib: CobD/Cbib 31.2 24 0.00053 39.4 1.4 47 757-803 194-244 (295)
4 PF12949 HeH: HeH/LEM domain; 31.0 34 0.00074 28.3 1.8 17 807-823 7-23 (35)
5 PRK08878 adenosylcobinamide-ph 29.6 23 0.00051 40.3 0.9 47 755-802 202-248 (317)
6 PRK01209 cobD cobalamin biosyn 23.3 46 0.00099 37.6 1.7 48 755-802 195-246 (312)
7 COG1270 CbiB Cobalamin biosynt 23.3 37 0.00081 39.2 1.1 76 727-802 163-251 (320)
8 PF10382 DUF2439: Protein of u 22.6 28 0.0006 32.7 -0.1 14 884-897 13-27 (83)
9 PRK07630 CobD/CbiB family prot 22.4 40 0.00087 38.1 1.1 48 754-802 192-239 (312)
10 PF10755 DUF2585: Protein of u 21.7 43 0.00093 35.7 1.0 35 726-760 73-107 (165)
11 PRK00944 hypothetical protein; 21.0 45 0.00098 36.3 1.1 16 725-740 101-116 (195)
No 1
>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans. It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].
Probab=70.87 E-value=69 Score=41.88 Aligned_cols=462 Identities=21% Similarity=0.256 Sum_probs=257.1
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhhcCCCchhhHHHHHHHHHHhHHHhhccccCChHHHHHhhhhcccc--cCCCcc
Q 000987 86 ANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGD--LGRKSK 163 (1198)
Q Consensus 86 ~Nt~mAiEvi~~~l~~K~ts~iLrLv~~Nmpe~w~~f~QRLqllea~slal~~~k~~~~~~l~~L~s~~~~v--~~~e~k 163 (1198)
.+.-+..+++++++++++...+||+++.|=||-|+...|+.+-|+...... .-+..+..+.+-..++... ...+-+
T Consensus 153 ~~l~~~~~~L~~i~~s~f~~aLL~Iak~ee~e~w~~v~q~~~~l~~~l~~~--~~~~~~~tL~~~l~kl~sl~~~~~~m~ 230 (990)
T PF11277_consen 153 EILEKCCQRLEKILESTFLRALLYIAKLEEPESWNEVEQKCAKLKNSLSNS--GFVKSNVTLRDQLEKLASLEKSIPSMK 230 (990)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHhhhccHhHHHHHHHHHHHHHHHhccc--ccccCchHHHHHHHHHHHHHhcCcccc
Confidence 345578899999999999999999999999999999999999988743331 1112344444444443331 111100
Q ss_pred -ccCccceeeeccCCccccccccccCcccccccchhHHhhhhccCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHH
Q 000987 164 -TAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGL 242 (1198)
Q Consensus 164 -~~~~~~~~~l~~~~s~~s~~g~~~Gas~SAlWlPfDiylEdaMDG~qv~~tSaIEiL~~liKtlQ~vN~asW~dtFlaL 242 (1198)
.+..+..+.+ .++ =..+ |++|-.| +.++-++-+.+-...+|.+.+=++.+-|.=+
T Consensus 231 ~v~~~~~~e~~---~~s------------VqaL----I~vE~ll-----Npt~dtq~lVeqL~mlqrlk~~~~~~ly~EI 286 (990)
T PF11277_consen 231 PVNSEQLSETI---FPS------------VQAL----IAVEVLL-----NPTSDTQQLVEQLMMLQRLKGIPNPRLYCEI 286 (990)
T ss_pred CCCcccCCCCC---cch------------HHHH----HHHHHHH-----ccCccHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 1111111100 000 0112 3444433 4577888888888999999999999999999
Q ss_pred HHHHHhhhhhcCCCCCCCCCccccchhhhhhhhhhhHhhhhhhhhhhhcccccCCCCCCCCCCCCCccchhhhHHHhhhh
Q 000987 243 WIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLL 322 (1198)
Q Consensus 243 WiaaLRLVQReRdp~EGPiPhldsrLCMLLsI~PLaIa~IieEE~~~~~~e~~~~p~~~~~~k~~~~~~R~~LisSLQvL 322 (1198)
|=|.+=-.- |..||. -|++.| +.+-|=|=.||.+=-......+ +++ + +..-..+++.++..|
T Consensus 287 irACfl~L~---e~~~ts---~E~~w~---AFtFlKlPqIl~~L~~~~~~~~---~~d----~--~~~~~~dl~~Afe~L 348 (990)
T PF11277_consen 287 IRACFLGLI---ESPETS---EELKWC---AFTFLKLPQILKQLHALSRGDK---PQD----K--IAEYSEDLVEAFELL 348 (990)
T ss_pred HHHHHhhhc---cCCCCC---cchhhh---hhhhhhHHHHHHHHHHhccCCC---ccc----c--cccccHHHHHHHHHH
Confidence 988765332 222444 577888 5555555555554333221011 011 1 345567899999999
Q ss_pred cccccccCCchhhhhHHHHHHHHHHHHHhccccCCCccccccCCCCcccccCchhHHHHHHHhhhcccccc--ceecccc
Q 000987 323 GDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTS--AYLWPGY 400 (1198)
Q Consensus 323 G~y~gLL~PP~~vv~aANqAA~KAa~FiSg~~~~~g~~~~~~~~d~~~~~~GNMrHLIVEACIaRnLlDtS--aY~WpGY 400 (1198)
=++..||- . +.+||.-|.--.+.|-|-..|||+-+ .++
T Consensus 349 l~~~pLLD----------------------------------~--~D~kc~Cn~v~~LL~e~~K~~lise~~~k~l---- 388 (990)
T PF11277_consen 349 LQLTPLLD----------------------------------K--MDQKCNCNCVECLLNELVKLGLISESQVKNL---- 388 (990)
T ss_pred HccchhhH----------------------------------H--HhhhcCCcHHHHHHHHHHHcCcccHHHHHHH----
Confidence 98888871 1 22578889999999999999999865 211
Q ss_pred cccCCCCCccCCccccCCCccccccCCCCChhhhhhhhcCCCCcHHHHHHHHHHHccCCchhhhhhhhhhcccccccccc
Q 000987 401 VNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWS 480 (1198)
Q Consensus 401 v~~~~~~~i~~s~p~q~spWs~fM~GspLt~~L~naLv~tPAsSlAElEKly~iAv~GSdeEk~aAA~ILCGASL~RGWn 480 (1198)
...+. +.+++ +++.- |+.. +.-.--||.
T Consensus 389 -~~kR~---------~~~~~------------------------------l~~~~-n~~~--qp~~~lIlR--------- 416 (990)
T PF11277_consen 389 -LAKRE---------EMSPG------------------------------LQKLE-NTNQ--QPNPKLILR--------- 416 (990)
T ss_pred -HHHhh---------hhhhh------------------------------hhhcc-cCCC--CCCcceEEe---------
Confidence 11000 00011 11111 1111 101111111
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCCcccccchhhHHHHHHhcCCcccce-eeeecccchhhhHhhhhhhhhhhcCCCCCCC
Q 000987 481 VQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCI-QIFSLHGWVPLLAAALMPICEVFGSSIPNAS 559 (1198)
Q Consensus 481 IQEH~v~~vvkLLSppvP~~~sGs~s~li~~~pmLn~ll~GissvD~v-hI~SLhGlVP~~Aa~LMPiCEvFGS~~P~~s 559 (1198)
-|-++-=|+|.|+ +||+-...-+++ ||+-+++| +|.|.| -...--|=.+.+|..|.=+=|.--.+ |.-.
T Consensus 417 -AE~tl~~IlKtl~----ad~~k~~e~ll~---vL~~mlsG-~SfdlilAaAa~~GkLk~FaskLIk~Ne~~K~~-~~e~ 486 (990)
T PF11277_consen 417 -AEPTLTGILKTLD----ADYSKSQEGLLG---VLCQMLSG-KSFDLILAAAAVTGKLKSFASKLIKCNEFSKQI-SGEG 486 (990)
T ss_pred -cccHHHHHHHHhc----cccccchHHHHH---HHHhhccC-CcHHHHHHHHHHcccHHHHHHHHHhhccccccC-Cccc
Confidence 2667777888887 566543332222 33334443 344432 12233466677777777666654331 1111
Q ss_pred CccCCCCccchhhhHHHHHHHHHHHhhcCCCchhhcccCCCccccCCCchhhhhhcccccccCCCCccchhccccccccc
Q 000987 560 WTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNI 639 (1198)
Q Consensus 560 ~t~~~gee~S~~~VFS~AFl~LlRLWkF~~PPlE~l~g~g~~vgs~lt~eyLLllRN~~~~~~~~~~~~~~~~~~~~~~~ 639 (1198)
-+ ...+-...|=.-|+.|-|.=+-|- +|.-+.
T Consensus 487 ~K----~a~~Ra~LFDiSFLMLc~i~q~YG--------------sevvls------------------------------ 518 (990)
T PF11277_consen 487 SK----SAQTRALLFDISFLMLCSIVQTYG--------------SEVVLS------------------------------ 518 (990)
T ss_pred cc----cchhHHHHHhhHHHHHHHHHHHcC--------------CcEEEC------------------------------
Confidence 00 123345678888888877655442 221000
Q ss_pred ccCCCcccccccchhhHHHhhhhh----HHHHhhhccccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcCCCCCCC
Q 000987 640 KFSTDPIFMDSFPKLKRWYRQNEE----CIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGL 715 (1198)
Q Consensus 640 ~~s~~Pv~iDSFPKLk~WY~Q~qa----CiAStlSgl~~g~pvhqv~~~lL~mmf~K~nk~g~~~~~~ss~sSsSs~~~~ 715 (1198)
.+. ||| ...|+++.-- +. |.-..+.. |=...+|.+|+.+ |+ +
T Consensus 519 -e~~-----~Sf--Fe~Wv~~~m~e~~~~~-sP~~~~~~--~d~~~vd~ll~~l----~~-------------------~ 564 (990)
T PF11277_consen 519 -ENG-----DSF--FEKWVRECMPEEGKSK-SPDQPLAL--CDPAKVDSLLAQL----NS-------------------S 564 (990)
T ss_pred -CCC-----CcH--HHHHHHHhcccccCCC-Chhhhhhc--cCchhHHHHHHHh----cC-------------------c
Confidence 000 111 3456654210 00 00011111 2234667777663 22 1
Q ss_pred ccccccCCcchh-HHhhhhhhHHHHHHhhhccCCCCchhh---hhhhhhhhhhcc-hhHHHHHHHhh
Q 000987 716 EDVSIKLKVPAW-DILEATPFVLDAALAACAHGRLSPREL---ATGLKELSDCLP-ATLATVVSYFS 777 (1198)
Q Consensus 716 dD~~~rp~lPAW-eiLEAvPFVlda~LTACaHGrLS~RdL---~TGLrDL~DFLP-ASlatIvSYfS 777 (1198)
+ ..+|.---| ||--.+|.|+-=+|.|=-+|-+|.-|+ +.++||=+-+|| .--|-+.+|-.
T Consensus 565 ~--~~k~~~~kW~eiC~~iP~~i~eiL~AwE~g~ls~~~Vk~ild~ik~~~~~l~VCa~awLcay~~ 629 (990)
T PF11277_consen 565 Q--EFKLSQVKWHEICLNIPGAIKEILNAWENGTLSIEEVKRILDNIKGKMCCLSVCAAAWLCAYMR 629 (990)
T ss_pred c--ccCcccCcHHHHHHhhHHHHHHHHHHHHhCcccHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 2 244433445 788999999999999999999999885 778888777777 33445566654
No 2
>TIGR00380 cobD cobalamin biosynthesis protein CobD. This protein is involved in cobalamin (vitamin B12) biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon.
Probab=37.14 E-value=15 Score=41.69 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=32.5
Q ss_pred hhhhhhhhhhcchhHHHHHHHhhhhhccccccccccCCCCCCCcccch
Q 000987 755 ATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNL 802 (1198)
Q Consensus 755 ~TGLrDL~DFLPASlatIvSYfSAEvTRGiWKpv~MNGtDWPSPaAnL 802 (1198)
+.-+.|+.+|+||-|.++.--+.+-=.++-|+-..=.+.+||||.+-.
T Consensus 199 aarlddiln~iPaRLtal~~~~~~~~~~~a~~~~~r~~~~~~spNsG~ 246 (305)
T TIGR00380 199 AARLDDILNYIPSRLTVFMLLFLSGKPKGAFAIVLRDAPKDPSPNSGW 246 (305)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcCCCccH
Confidence 345889999999999986433332111345566566788999998765
No 3
>PF03186 CobD_Cbib: CobD/Cbib protein; InterPro: IPR004485 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon [].; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=31.17 E-value=24 Score=39.40 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=38.1
Q ss_pred hhhhhhhhcchhHHHHHHHhhhhhcc----ccccccccCCCCCCCcccchh
Q 000987 757 GLKELSDCLPATLATVVSYFSAEVTR----GLWKPAFMNGTDWPSPATNLS 803 (1198)
Q Consensus 757 GLrDL~DFLPASlatIvSYfSAEvTR----GiWKpv~MNGtDWPSPaAnL~ 803 (1198)
-|.|+++|+||-|.+..--+.+=..+ +-|+...=.+..||||.+-..
T Consensus 194 rldd~ln~iPaRLtal~~~l~~~~~~~~~~~a~~~~~r~~~~~~SpNsg~~ 244 (295)
T PF03186_consen 194 RLDDLLNWIPARLTALLIALAAPFLGLDWKGALRAWRRDARKHPSPNSGWP 244 (295)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHccccccHHHHHHHHHhhhcCCCCCCcccH
Confidence 37899999999999888777776664 667888888999999976543
No 4
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=31.02 E-value=34 Score=28.27 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=12.6
Q ss_pred HHHHHHHHhhCCCCccc
Q 000987 807 QQIKKILAATGVDVPTV 823 (1198)
Q Consensus 807 ~~ik~ILAatGVdvP~~ 823 (1198)
.|+|+||.+.||++|+-
T Consensus 7 ~~Lk~iL~~~~I~~ps~ 23 (35)
T PF12949_consen 7 AQLKRILDEHGIEFPSN 23 (35)
T ss_dssp HHHHHHHHHHT---SSS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 58999999999999984
No 5
>PRK08878 adenosylcobinamide-phosphate synthase; Provisional
Probab=29.56 E-value=23 Score=40.26 Aligned_cols=47 Identities=15% Similarity=0.367 Sum_probs=32.9
Q ss_pred hhhhhhhhhhcchhHHHHHHHhhhhhccccccccccCCCCCCCcccch
Q 000987 755 ATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNL 802 (1198)
Q Consensus 755 ~TGLrDL~DFLPASlatIvSYfSAEvTRGiWKpv~MNGtDWPSPaAnL 802 (1198)
+.-+.|+.||+||-|.+..--..+- .++-||-..=.+..||||.+-.
T Consensus 202 aArlddiLnwiPARLtal~~~l~~~-~~~a~~~~~rd~~~~~SpNsG~ 248 (317)
T PRK08878 202 AVRILAILDFIPLRLFALLILLGKN-AGHTFQGLLQQSKSWPLPGPAW 248 (317)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhh-HHHHHHHHHHhcccCCCCCchH
Confidence 4458899999999998765444332 2445655555789999998764
No 6
>PRK01209 cobD cobalamin biosynthesis protein; Provisional
Probab=23.31 E-value=46 Score=37.60 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=34.5
Q ss_pred hhhhhhhhhhcchhHHHHHHHhhhhhcccccc----ccccCCCCCCCcccch
Q 000987 755 ATGLKELSDCLPATLATVVSYFSAEVTRGLWK----PAFMNGTDWPSPATNL 802 (1198)
Q Consensus 755 ~TGLrDL~DFLPASlatIvSYfSAEvTRGiWK----pv~MNGtDWPSPaAnL 802 (1198)
+.-+.|+.||+||-|.++.=-..|=+.+|=+| -..=.+.+||||.+-.
T Consensus 195 aarlddilnwiPaRLtal~~~l~a~~~~g~~~~a~~~~~~~~~~~~spn~g~ 246 (312)
T PRK01209 195 AARLDDVLNYIPARLTALLLALAAPLLGGDPRGALRIWRRDARKHPSPNAGW 246 (312)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCcCCCchH
Confidence 56789999999999987766555544444333 3345789999998764
No 7
>COG1270 CbiB Cobalamin biosynthesis protein CobD/CbiB [Coenzyme metabolism]
Probab=23.29 E-value=37 Score=39.20 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=47.4
Q ss_pred hHHhhhhhhHHH--HHHhhhcc-CCCCchhh-----hhhhhhhhhhcchhHHHHHHH-----hhhhhccccccccccCCC
Q 000987 727 WDILEATPFVLD--AALAACAH-GRLSPREL-----ATGLKELSDCLPATLATVVSY-----FSAEVTRGLWKPAFMNGT 793 (1198)
Q Consensus 727 WeiLEAvPFVld--a~LTACaH-GrLS~RdL-----~TGLrDL~DFLPASlatIvSY-----fSAEvTRGiWKpv~MNGt 793 (1198)
|=++--.|-++= ++=|.=++ |--++|=. .--+.|+++|+||-|.++.-- .+..-+|..||-+-=...
T Consensus 163 ~~~v~G~pgA~~YRaiNTlDsMvGyk~~~y~~fG~~sArlDD~lN~iPARLt~~l~~~~~~~~~~~~~~~a~~~~~rda~ 242 (320)
T COG1270 163 WFLVGGLPGALLYRAINTLDSMVGYRNERYRRFGWFSARLDDLLNYIPARLTALLLALASLVLGGGPTRQALRIWRRDAR 242 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhCCCCCcchhhccHHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcHHHHHHHHHHHhc
Confidence 666666665542 22233222 22232222 233789999999998754322 235667888998888888
Q ss_pred CCCCcccch
Q 000987 794 DWPSPATNL 802 (1198)
Q Consensus 794 DWPSPaAnL 802 (1198)
.||||.+--
T Consensus 243 ~~~SpNsg~ 251 (320)
T COG1270 243 KHPSPNAGW 251 (320)
T ss_pred cCCCCCCcc
Confidence 999998754
No 8
>PF10382 DUF2439: Protein of unknown function (DUF2439); InterPro: IPR018838 This domain is found at the N-terminal of proteins implicated in telomere maintenance in Saccharomyces cerevisiae (Baker's yeast) [] and in meiotic chromosome segregation in Schizosaccharomyces pombe (Fission yeast) [].
Probab=22.57 E-value=28 Score=32.73 Aligned_cols=14 Identities=43% Similarity=1.035 Sum_probs=10.8
Q ss_pred Hhhhhcccc-eEEEe
Q 000987 884 AQKVKRWND-FLVFS 897 (1198)
Q Consensus 884 ~QKVkRW~d-fiV~S 897 (1198)
+||.|+||| |+.|.
T Consensus 13 ~kK~K~W~DG~l~~~ 27 (83)
T PF10382_consen 13 TKKRKKWHDGFLKYH 27 (83)
T ss_pred cccceeeECCEEEEE
Confidence 699999999 45444
No 9
>PRK07630 CobD/CbiB family protein; Provisional
Probab=22.42 E-value=40 Score=38.07 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred hhhhhhhhhhhcchhHHHHHHHhhhhhccccccccccCCCCCCCcccch
Q 000987 754 LATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNL 802 (1198)
Q Consensus 754 L~TGLrDL~DFLPASlatIvSYfSAEvTRGiWKpv~MNGtDWPSPaAnL 802 (1198)
.+.-|.|+.||+||-|.++.=-..+... +.|+...=.+.+||||.+..
T Consensus 192 ~aarldd~lnwiPaRL~al~~al~g~~~-~a~~~~~~~~~~~~spn~g~ 239 (312)
T PRK07630 192 FAQRAFFVIDWVPARLTALGFAIVGNFE-DAIYAWRNQARQWPDENDGI 239 (312)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCHH-HHHHHHHHhhccCCCCCchH
Confidence 3566899999999999887655555432 34454455688999998876
No 10
>PF10755 DUF2585: Protein of unknown function (DUF2585); InterPro: IPR019691 This family is conserved in Proteobacteria. The function is not known, but it is thought to be a transmembrane protein. ; GO: 0005886 plasma membrane
Probab=21.71 E-value=43 Score=35.74 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=22.5
Q ss_pred hhHHhhhhhhHHHHHHhhhccCCCCchhhhhhhhh
Q 000987 726 AWDILEATPFVLDAALAACAHGRLSPRELATGLKE 760 (1198)
Q Consensus 726 AWeiLEAvPFVlda~LTACaHGrLS~RdL~TGLrD 760 (1198)
+|||+|..|||+|--=+|-.-..-.---.....-|
T Consensus 73 ~WEi~ENsp~II~rYR~~Tia~~Y~GDSV~NSv~D 107 (165)
T PF10755_consen 73 AWEIVENSPFIIERYRAATIALDYFGDSVLNSVSD 107 (165)
T ss_pred hhhhhhCCHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 99999999999986554443333333334444444
No 11
>PRK00944 hypothetical protein; Provisional
Probab=20.97 E-value=45 Score=36.30 Aligned_cols=16 Identities=31% Similarity=0.972 Sum_probs=14.2
Q ss_pred chhHHhhhhhhHHHHH
Q 000987 725 PAWDILEATPFVLDAA 740 (1198)
Q Consensus 725 PAWeiLEAvPFVlda~ 740 (1198)
.||||+|..|||+|-=
T Consensus 101 ~aWEi~ENsp~II~RY 116 (195)
T PRK00944 101 SAWELLENSPLIIERY 116 (195)
T ss_pred hhhHhhcCCHHHHHHH
Confidence 5899999999999853
Done!