Query 000987
Match_columns 1198
No_of_seqs 44 out of 46
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 05:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i5o_A DNA polymerase ETA; zin 26.2 32 0.0011 27.8 2.0 21 471-492 15-36 (39)
2 3a1y_A 50S ribosomal protein P 25.9 32 0.0011 29.5 2.2 17 806-822 19-35 (58)
3 2gut_A ARC/mediator, positive 25.4 40 0.0014 30.9 2.8 33 788-821 2-34 (77)
4 2lbf_A 60S acidic ribosomal pr 21.7 42 0.0014 29.7 2.1 17 806-822 25-41 (69)
5 3e2u_E CAP-Gly domain-containi 21.3 18 0.0006 30.1 -0.3 7 547-553 25-31 (42)
6 2hqh_E Restin; beta/BETA struc 17.5 24 0.00081 26.9 -0.3 7 547-553 8-14 (26)
7 2lbf_B 60S acidic ribosomal pr 17.4 58 0.002 29.1 2.0 17 806-822 21-37 (70)
8 1k3y_A GSTA1-1, glutathione S- 17.2 98 0.0034 29.8 3.8 25 646-670 172-198 (221)
9 2pzo_E CAP-Gly domain-containi 17.1 25 0.00086 29.2 -0.3 7 547-553 25-31 (42)
10 3tou_A Glutathione S-transfera 13.5 46 0.0016 32.3 0.5 34 647-680 178-213 (226)
No 1
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.17 E-value=32 Score=27.84 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=18.8
Q ss_pred cccccccccchhhHH-HHHHHHh
Q 000987 471 CGASLVRGWSVQENT-ILFIIKL 492 (1198)
Q Consensus 471 CGASL~RGWnIQEH~-v~~vvkL 492 (1198)
||..+-- |..|||. -||..+|
T Consensus 15 C~~~i~~-~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 15 CGSLVPV-WDMPEHMDYHFALEL 36 (39)
T ss_dssp TCCEEEG-GGHHHHHHHHHHHHH
T ss_pred ccCcCCc-ccccchhhHHHHHHH
Confidence 8988876 9999999 9999887
No 2
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=25.95 E-value=32 Score=29.46 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhCCCCcc
Q 000987 806 EQQIKKILAATGVDVPT 822 (1198)
Q Consensus 806 E~~ik~ILAatGVdvP~ 822 (1198)
++.||+||.++||+|-.
T Consensus 19 ~~~I~~il~aaGveve~ 35 (58)
T 3a1y_A 19 EENLKAVLQAAGVEPEE 35 (58)
T ss_dssp HHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHcCCCccH
Confidence 78999999999999854
No 3
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=25.40 E-value=40 Score=30.90 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=24.1
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHHhhCCCCc
Q 000987 788 AFMNGTDWPSPATNLSSIEQQIKKILAATGVDVP 821 (1198)
Q Consensus 788 v~MNGtDWPSPaAnL~~vE~~ik~ILAatGVdvP 821 (1198)
|+=++.||+||+--. .|=.+|.+.++..|+..|
T Consensus 2 ~~~~~~dW~s~~FRq-~vi~~i~~a~~~~G~~~~ 34 (77)
T 2gut_A 2 AMGQETDWRSTAFRQ-KLVSQIEDAMRKAGVAHS 34 (77)
T ss_dssp CCSCCSCTTSHHHHH-HHHHHHHHHHHHHCCCCS
T ss_pred CCCccccccCHHHHH-HHHHhhHHHHHHhCCCCC
Confidence 455789999998753 344677788888898643
No 4
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=21.65 E-value=42 Score=29.73 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhCCCCcc
Q 000987 806 EQQIKKILAATGVDVPT 822 (1198)
Q Consensus 806 E~~ik~ILAatGVdvP~ 822 (1198)
++.||+||.++||+|-.
T Consensus 25 a~~I~~il~AaGveve~ 41 (69)
T 2lbf_A 25 EDKINALIKAAGVNVEP 41 (69)
T ss_dssp HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHcCCCccH
Confidence 68899999999999954
No 5
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=21.33 E-value=18 Score=30.11 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.4
Q ss_pred hhhhhcC
Q 000987 547 ICEVFGS 553 (1198)
Q Consensus 547 iCEvFGS 553 (1198)
+|||||-
T Consensus 25 ~CEVFGH 31 (42)
T 3e2u_E 25 ICEMFGH 31 (42)
T ss_dssp TTTEESS
T ss_pred cceeccc
Confidence 6888883
No 6
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=17.54 E-value=24 Score=26.88 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.9
Q ss_pred hhhhhcC
Q 000987 547 ICEVFGS 553 (1198)
Q Consensus 547 iCEvFGS 553 (1198)
+||+||-
T Consensus 8 ~CE~FGH 14 (26)
T 2hqh_E 8 ICEMFGH 14 (26)
T ss_dssp TTTEESS
T ss_pred HHHHhCc
Confidence 7999984
No 7
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=17.38 E-value=58 Score=29.06 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhCCCCcc
Q 000987 806 EQQIKKILAATGVDVPT 822 (1198)
Q Consensus 806 E~~ik~ILAatGVdvP~ 822 (1198)
++.||+||.++||+|-.
T Consensus 21 a~~I~~il~aaGvevd~ 37 (70)
T 2lbf_B 21 AKDIKKILDSVGIEADD 37 (70)
T ss_dssp HHHHHHHHHTTTCCCCT
T ss_pred HHHHHHHHHHcCCCccH
Confidence 67899999999999854
No 8
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...
Probab=17.23 E-value=98 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=17.9
Q ss_pred ccccccchhhHHH--hhhhhHHHHhhh
Q 000987 646 IFMDSFPKLKRWY--RQNEECIASTLT 670 (1198)
Q Consensus 646 v~iDSFPKLk~WY--~Q~qaCiAStlS 670 (1198)
..++.||+|++|| .+....+..++.
T Consensus 172 ~~~~~~p~l~~w~~~i~~~p~~~~~~~ 198 (221)
T 1k3y_A 172 SLISSFPLLKALKTRISNLPTVKKFLQ 198 (221)
T ss_dssp TTTTTCHHHHHHHHHHHHSHHHHHHHS
T ss_pred hhhhcCchHHHHHHHHHhCHHHHHHHH
Confidence 3468899999999 445556666664
No 9
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=17.06 E-value=25 Score=29.22 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.7
Q ss_pred hhhhhcC
Q 000987 547 ICEVFGS 553 (1198)
Q Consensus 547 iCEvFGS 553 (1198)
||||||-
T Consensus 25 ~CEvFGH 31 (42)
T 2pzo_E 25 ICEMFGH 31 (42)
T ss_dssp TTTEESS
T ss_pred cccccCc
Confidence 7999984
No 10
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*
Probab=13.51 E-value=46 Score=32.28 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=27.7
Q ss_pred cccccchhhHHH--hhhhhHHHHhhhccccCChHHH
Q 000987 647 FMDSFPKLKRWY--RQNEECIASTLTGLVHGTSVHL 680 (1198)
Q Consensus 647 ~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pvhq 680 (1198)
..+.||+|++|| .+....+..++....+.+|..+
T Consensus 178 ~~~~~p~l~~w~~r~~~~p~~~~~~~~~~~~~~~~~ 213 (226)
T 3tou_A 178 WREQHANLAAFYTRIEKRPSFLETQPQAENLYFQSH 213 (226)
T ss_dssp HHHHCHHHHHHHHHHHTSHHHHTTCGGGGGCGGGCC
T ss_pred hhhcChHHHHHHHHHhcCHHHHHhCcchhhhhhhhc
Confidence 467899999999 6677888888888888877654
Done!