Query 000991
Match_columns 1197
No_of_seqs 685 out of 3588
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 12:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0920 ATP-dependent RNA heli 100.0 9E-149 2E-153 1360.9 61.3 874 132-1064 23-920 (924)
2 KOG0922 DEAH-box RNA helicase 100.0 2E-127 4E-132 1117.2 50.0 625 284-998 37-665 (674)
3 KOG0924 mRNA splicing factor A 100.0 3E-123 7E-128 1062.3 42.0 622 288-999 346-972 (1042)
4 KOG0923 mRNA splicing factor A 100.0 2E-121 4E-126 1049.1 43.2 623 288-999 255-882 (902)
5 KOG0925 mRNA splicing factor A 100.0 5E-116 1E-120 976.0 43.5 623 283-997 32-664 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 9E-111 2E-115 1064.2 58.3 626 289-1001 65-698 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1E-106 3E-111 1030.5 57.6 624 289-1000 58-687 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 1E-103 3E-108 970.0 43.8 634 282-996 34-707 (845)
9 KOG0926 DEAH-box RNA helicase 100.0 4.3E-99 9E-104 876.3 38.5 631 287-998 245-1021(1172)
10 KOG0921 Dosage compensation co 100.0 9.4E-95 2E-99 847.3 37.2 781 281-1081 361-1167(1282)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2E-83 4.4E-88 804.3 52.0 570 297-996 1-574 (819)
12 PRK11664 ATP-dependent RNA hel 100.0 2.5E-82 5.3E-87 796.4 51.2 559 296-996 3-567 (812)
13 PHA02653 RNA helicase NPH-II; 100.0 1.8E-55 3.8E-60 540.9 34.8 401 302-802 168-596 (675)
14 PRK01172 ski2-like helicase; P 100.0 8.2E-40 1.8E-44 412.0 43.1 423 297-801 21-492 (674)
15 PRK02362 ski2-like helicase; P 100.0 1.1E-38 2.3E-43 404.9 41.3 426 299-801 24-514 (737)
16 KOG0330 ATP-dependent RNA heli 100.0 2.1E-38 4.6E-43 348.8 20.6 318 296-711 82-410 (476)
17 PRK00254 ski2-like helicase; P 100.0 4.3E-36 9.2E-41 380.2 40.7 432 288-800 13-504 (720)
18 PRK11776 ATP-dependent RNA hel 100.0 1.5E-36 3.3E-41 366.8 29.5 311 299-710 27-351 (460)
19 KOG0331 ATP-dependent RNA heli 100.0 5.3E-37 1.1E-41 359.3 24.5 324 296-711 112-451 (519)
20 PRK11192 ATP-dependent RNA hel 100.0 2.9E-36 6.4E-41 361.8 27.1 335 285-712 10-356 (434)
21 PRK04837 ATP-dependent RNA hel 100.0 8E-36 1.7E-40 356.7 28.7 313 297-710 30-364 (423)
22 PRK10590 ATP-dependent RNA hel 100.0 9.9E-36 2.2E-40 358.8 28.5 314 299-710 24-354 (456)
23 PTZ00110 helicase; Provisional 100.0 1.1E-35 2.5E-40 364.2 29.1 314 300-710 154-486 (545)
24 PRK11634 ATP-dependent RNA hel 100.0 2.7E-35 5.8E-40 364.2 30.9 315 295-709 25-353 (629)
25 PRK01297 ATP-dependent RNA hel 100.0 2.1E-35 4.5E-40 358.1 27.4 326 284-708 95-442 (475)
26 PRK04537 ATP-dependent RNA hel 100.0 5.8E-35 1.3E-39 359.2 29.2 310 300-709 33-365 (572)
27 PLN00206 DEAD-box ATP-dependen 100.0 6.1E-35 1.3E-39 356.5 26.7 314 297-710 143-477 (518)
28 TIGR03817 DECH_helic helicase/ 100.0 7.4E-35 1.6E-39 366.7 27.5 340 289-707 27-385 (742)
29 COG0513 SrmB Superfamily II DN 100.0 2.3E-34 5E-39 349.6 27.6 313 295-708 49-380 (513)
30 PTZ00424 helicase 45; Provisio 100.0 5.1E-34 1.1E-38 338.9 27.7 314 300-712 52-378 (401)
31 COG1204 Superfamily II helicas 100.0 2.4E-33 5.2E-38 349.6 30.7 426 301-803 35-528 (766)
32 COG1202 Superfamily II helicas 100.0 5E-33 1.1E-37 317.3 27.4 457 282-839 200-703 (830)
33 KOG0338 ATP-dependent RNA heli 100.0 9.7E-34 2.1E-38 319.6 19.8 323 294-709 200-534 (691)
34 KOG0333 U5 snRNP-like RNA heli 100.0 2.9E-33 6.4E-38 317.1 21.3 330 279-709 245-625 (673)
35 KOG0345 ATP-dependent RNA heli 100.0 2.7E-33 5.9E-38 314.7 20.6 338 299-726 29-385 (567)
36 TIGR00614 recQ_fam ATP-depende 100.0 1.8E-32 4E-37 331.5 27.4 307 300-711 13-336 (470)
37 KOG0342 ATP-dependent RNA heli 100.0 6.3E-33 1.4E-37 314.1 20.5 337 281-707 87-436 (543)
38 KOG0328 Predicted ATP-dependen 100.0 6.9E-33 1.5E-37 293.5 17.5 330 289-712 41-377 (400)
39 PRK13767 ATP-dependent helicas 100.0 5.6E-32 1.2E-36 347.0 28.0 327 299-704 33-396 (876)
40 KOG0343 RNA Helicase [RNA proc 100.0 3.8E-32 8.3E-37 309.0 21.7 326 297-712 90-426 (758)
41 PRK11057 ATP-dependent DNA hel 100.0 6.8E-32 1.5E-36 335.1 25.3 305 300-711 27-346 (607)
42 PLN03137 ATP-dependent DNA hel 100.0 8.6E-32 1.9E-36 336.5 25.2 308 299-711 461-790 (1195)
43 KOG0340 ATP-dependent RNA heli 100.0 1.2E-31 2.6E-36 292.6 21.4 316 302-711 33-364 (442)
44 KOG0348 ATP-dependent RNA heli 100.0 5.6E-31 1.2E-35 299.0 24.4 373 281-717 141-565 (708)
45 COG1201 Lhr Lhr-like helicases 100.0 3E-30 6.6E-35 317.7 30.2 386 286-766 11-438 (814)
46 PRK09751 putative ATP-dependen 100.0 6.7E-31 1.4E-35 341.4 24.3 318 318-708 1-384 (1490)
47 KOG0335 ATP-dependent RNA heli 100.0 4E-31 8.7E-36 305.0 19.0 312 303-706 101-442 (482)
48 TIGR01389 recQ ATP-dependent D 100.0 1.1E-30 2.5E-35 324.6 23.7 304 300-711 15-334 (591)
49 KOG0949 Predicted helicase, DE 100.0 5.5E-31 1.2E-35 314.2 15.8 633 48-727 247-1068(1330)
50 COG1111 MPH1 ERCC4-like helica 100.0 3.3E-29 7.2E-34 286.4 28.5 383 298-708 15-481 (542)
51 KOG0347 RNA helicase [RNA proc 100.0 1E-30 2.2E-35 297.6 14.3 342 294-708 200-570 (731)
52 TIGR00580 mfd transcription-re 100.0 4.1E-29 9E-34 317.7 30.0 297 299-708 452-770 (926)
53 KOG0326 ATP-dependent RNA heli 100.0 3E-30 6.5E-35 277.4 15.1 321 289-709 99-430 (459)
54 KOG0336 ATP-dependent RNA heli 100.0 1.3E-29 2.9E-34 279.3 17.2 316 303-711 247-575 (629)
55 KOG0339 ATP-dependent RNA heli 100.0 2.2E-29 4.8E-34 283.9 16.7 316 303-711 250-578 (731)
56 TIGR01587 cas3_core CRISPR-ass 100.0 1.6E-28 3.5E-33 287.6 24.7 300 315-709 1-337 (358)
57 KOG0332 ATP-dependent RNA heli 100.0 1.6E-28 3.5E-33 269.5 21.3 317 294-708 109-443 (477)
58 PRK10689 transcription-repair 100.0 1.5E-28 3.3E-33 318.6 24.8 297 299-707 601-918 (1147)
59 KOG0921 Dosage compensation co 100.0 2.7E-31 5.8E-36 314.1 -0.7 574 285-898 393-969 (1282)
60 KOG0354 DEAD-box like helicase 100.0 5.3E-28 1.2E-32 291.2 26.7 386 295-708 59-529 (746)
61 PRK10917 ATP-dependent DNA hel 100.0 3.1E-28 6.8E-33 305.6 25.6 298 298-706 261-587 (681)
62 TIGR00643 recG ATP-dependent D 100.0 2.4E-28 5.3E-33 304.7 24.5 300 299-706 236-564 (630)
63 KOG0952 DNA/RNA helicase MER3/ 100.0 3.8E-28 8.3E-33 293.6 24.0 437 308-816 121-639 (1230)
64 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-27 2.4E-32 296.8 27.5 346 299-744 16-428 (844)
65 KOG0350 DEAD-box ATP-dependent 100.0 8.1E-28 1.7E-32 272.1 17.9 322 299-709 160-541 (620)
66 KOG0341 DEAD-box protein abstr 100.0 2.4E-28 5.1E-33 267.8 11.6 312 303-710 197-530 (610)
67 KOG0947 Cytoplasmic exosomal R 99.9 4.3E-27 9.2E-32 281.2 20.2 372 295-708 294-723 (1248)
68 KOG0948 Nuclear exosomal RNA h 99.9 2.8E-27 6E-32 276.8 17.8 361 297-709 128-540 (1041)
69 KOG0346 RNA helicase [RNA proc 99.9 4.4E-27 9.6E-32 262.5 18.4 308 296-707 40-409 (569)
70 KOG0327 Translation initiation 99.9 2.9E-27 6.2E-32 262.7 16.0 326 288-713 39-375 (397)
71 PRK13766 Hef nuclease; Provisi 99.9 6.1E-26 1.3E-30 291.2 30.3 384 296-710 13-481 (773)
72 KOG0344 ATP-dependent RNA heli 99.9 1.3E-26 2.9E-31 268.8 19.1 324 296-710 157-497 (593)
73 PHA02558 uvsW UvsW helicase; P 99.9 1.5E-25 3.2E-30 273.0 27.8 319 297-700 113-443 (501)
74 TIGR03158 cas3_cyano CRISPR-as 99.9 1.1E-25 2.4E-30 262.9 25.5 303 302-694 1-357 (357)
75 KOG0334 RNA helicase [RNA proc 99.9 2.4E-26 5.2E-31 281.3 19.5 403 165-707 295-719 (997)
76 COG1205 Distinct helicase fami 99.9 9.7E-26 2.1E-30 285.4 24.6 331 293-706 65-420 (851)
77 KOG4284 DEAD box protein [Tran 99.9 1.4E-26 3.1E-31 267.0 12.6 321 296-709 46-380 (980)
78 COG4581 Superfamily II RNA hel 99.9 1.7E-25 3.7E-30 279.0 20.3 370 294-706 115-535 (1041)
79 COG0514 RecQ Superfamily II DN 99.9 6.7E-25 1.5E-29 262.2 21.3 304 303-711 22-340 (590)
80 KOG0951 RNA helicase BRR2, DEA 99.9 1.1E-23 2.3E-28 257.4 28.2 417 302-793 313-823 (1674)
81 PRK09401 reverse gyrase; Revie 99.9 1.7E-23 3.6E-28 272.5 26.4 285 285-663 67-410 (1176)
82 PRK14701 reverse gyrase; Provi 99.9 7.8E-23 1.7E-27 271.2 24.7 331 283-708 64-456 (1638)
83 TIGR00603 rad25 DNA repair hel 99.9 2.7E-22 5.8E-27 246.9 27.6 327 295-710 252-609 (732)
84 KOG0337 ATP-dependent RNA heli 99.9 4.4E-23 9.6E-28 229.9 17.4 326 287-709 33-369 (529)
85 TIGR01054 rgy reverse gyrase. 99.9 9.7E-22 2.1E-26 256.4 27.6 283 289-665 69-411 (1171)
86 PRK05580 primosome assembly pr 99.9 1.8E-21 3.9E-26 243.9 26.4 357 297-704 143-545 (679)
87 PRK09694 helicase Cas3; Provis 99.9 1.4E-21 2.9E-26 246.9 24.8 325 297-697 285-663 (878)
88 TIGR03714 secA2 accessory Sec 99.9 7.8E-21 1.7E-25 234.0 27.2 106 575-708 422-537 (762)
89 PRK12898 secA preprotein trans 99.9 1.4E-20 3E-25 229.5 28.4 105 577-708 473-586 (656)
90 PRK09200 preprotein translocas 99.9 7E-21 1.5E-25 236.6 26.2 107 575-708 426-541 (790)
91 KOG0352 ATP-dependent DNA heli 99.9 1.3E-21 2.9E-26 217.6 16.9 321 299-712 22-366 (641)
92 COG1061 SSL2 DNA or RNA helica 99.9 1.3E-20 2.7E-25 225.9 26.5 326 293-697 31-377 (442)
93 TIGR00963 secA preprotein tran 99.9 9.7E-21 2.1E-25 231.8 24.8 106 576-708 404-517 (745)
94 TIGR00595 priA primosomal prot 99.9 2E-21 4.3E-26 235.7 18.5 297 317-704 1-377 (505)
95 COG4098 comFA Superfamily II D 99.9 3.1E-20 6.8E-25 203.1 24.0 294 304-704 107-412 (441)
96 KOG0950 DNA polymerase theta/e 99.9 1E-20 2.2E-25 229.5 20.9 344 298-710 223-613 (1008)
97 PRK11448 hsdR type I restricti 99.9 4E-20 8.7E-25 239.8 26.3 352 297-705 412-812 (1123)
98 KOG0351 ATP-dependent DNA heli 99.9 4.7E-21 1E-25 241.2 16.7 312 302-713 268-597 (941)
99 COG1200 RecG RecG-like helicas 99.8 3.4E-20 7.4E-25 221.2 16.3 309 290-709 252-592 (677)
100 COG1197 Mfd Transcription-repa 99.8 1.7E-18 3.6E-23 216.9 27.5 297 300-708 596-913 (1139)
101 PRK04914 ATP-dependent helicas 99.8 1.2E-17 2.6E-22 212.7 27.6 120 564-707 480-604 (956)
102 KOG0353 ATP-dependent DNA heli 99.8 6.8E-18 1.5E-22 185.2 18.9 271 302-663 98-396 (695)
103 PF07717 OB_NTP_bind: Oligonuc 99.8 3.1E-19 6.7E-24 174.9 6.7 106 887-998 1-114 (114)
104 KOG0349 Putative DEAD-box RNA 99.8 7.6E-19 1.7E-23 195.6 9.5 302 348-706 288-613 (725)
105 COG1203 CRISPR-associated heli 99.7 6.4E-17 1.4E-21 205.0 21.9 314 298-706 195-548 (733)
106 PRK13104 secA preprotein trans 99.7 4.5E-16 9.8E-21 193.4 28.6 126 294-425 76-213 (896)
107 KOG0329 ATP-dependent RNA heli 99.7 4.6E-17 1E-21 171.4 14.8 168 289-459 56-230 (387)
108 PF00270 DEAD: DEAD/DEAH box h 99.7 1.8E-16 3.8E-21 165.0 12.0 153 301-457 2-163 (169)
109 PRK12906 secA preprotein trans 99.7 1.7E-15 3.7E-20 187.7 22.0 107 575-708 438-553 (796)
110 cd00268 DEADc DEAD-box helicas 99.7 4E-16 8.7E-21 168.0 14.2 159 299-458 22-186 (203)
111 PRK12904 preprotein translocas 99.7 8.8E-15 1.9E-19 182.1 27.7 106 575-707 428-572 (830)
112 PF04408 HA2: Helicase associa 99.7 9.2E-17 2E-21 154.2 7.5 92 759-850 1-102 (102)
113 COG4096 HsdR Type I site-speci 99.7 3.7E-15 8.1E-20 180.2 20.6 370 307-736 178-576 (875)
114 TIGR00348 hsdR type I site-spe 99.6 1.8E-14 3.8E-19 181.1 27.3 153 295-456 236-402 (667)
115 PRK13107 preprotein translocas 99.6 6.6E-14 1.4E-18 173.8 26.8 105 576-707 448-590 (908)
116 PRK12899 secA preprotein trans 99.6 1.3E-13 2.8E-18 171.5 24.0 124 296-425 88-226 (970)
117 COG1110 Reverse gyrase [DNA re 99.5 6.6E-13 1.4E-17 162.9 25.6 288 281-664 65-418 (1187)
118 smart00847 HA2 Helicase associ 99.5 7.3E-15 1.6E-19 138.2 5.9 91 759-850 1-92 (92)
119 COG1198 PriA Primosomal protei 99.5 2.2E-13 4.8E-18 168.4 16.6 352 297-703 197-598 (730)
120 KOG0953 Mitochondrial RNA heli 99.5 8.1E-13 1.8E-17 152.9 19.7 276 312-708 190-477 (700)
121 PLN03142 Probable chromatin-re 99.5 2.6E-12 5.6E-17 164.9 25.1 111 576-711 486-602 (1033)
122 TIGR01407 dinG_rel DnaQ family 99.5 8E-12 1.7E-16 161.8 28.8 140 566-712 664-822 (850)
123 smart00487 DEXDc DEAD-like hel 99.4 2.2E-12 4.7E-17 136.1 15.9 154 297-456 7-170 (201)
124 cd00046 DEXDc DEAD-like helica 99.4 2.6E-12 5.6E-17 127.4 13.5 137 314-456 1-144 (144)
125 KOG4150 Predicted ATP-dependen 99.4 4.9E-12 1.1E-16 145.5 15.8 319 294-697 282-628 (1034)
126 TIGR02562 cas3_yersinia CRISPR 99.3 1E-10 2.2E-15 146.9 25.5 97 581-699 760-882 (1110)
127 cd00079 HELICc Helicase superf 99.3 4E-12 8.7E-17 126.1 9.9 103 576-703 27-130 (131)
128 TIGR00631 uvrb excinuclease AB 99.3 6.8E-12 1.5E-16 156.5 11.7 124 565-708 429-553 (655)
129 PF00271 Helicase_C: Helicase 99.3 2.5E-12 5.5E-17 116.9 4.2 72 608-697 7-78 (78)
130 PF04851 ResIII: Type III rest 99.2 2.5E-11 5.5E-16 127.6 10.0 145 298-457 3-183 (184)
131 PRK07246 bifunctional ATP-depe 99.2 2.1E-09 4.6E-14 137.9 29.0 154 564-730 636-812 (820)
132 PRK05298 excinuclease ABC subu 99.2 3.8E-11 8.3E-16 150.7 12.2 122 566-707 434-556 (652)
133 PF07652 Flavi_DEAD: Flaviviru 99.2 7.3E-11 1.6E-15 118.0 10.6 135 311-458 2-138 (148)
134 PRK12326 preprotein translocas 99.2 5.5E-09 1.2E-13 127.9 27.6 115 566-707 415-546 (764)
135 KOG0385 Chromatin remodeling c 99.2 3.5E-09 7.6E-14 127.0 23.8 375 300-711 169-602 (971)
136 PRK13103 secA preprotein trans 99.1 4.9E-09 1.1E-13 131.2 24.4 124 296-425 78-213 (913)
137 KOG1123 RNA polymerase II tran 99.1 3.8E-10 8.2E-15 129.2 12.3 314 299-697 303-635 (776)
138 KOG0951 RNA helicase BRR2, DEA 99.1 7.5E-10 1.6E-14 137.9 15.3 321 311-719 1157-1508(1674)
139 PRK12900 secA preprotein trans 99.1 1.8E-10 3.8E-15 144.3 10.0 107 576-709 597-712 (1025)
140 smart00490 HELICc helicase sup 99.1 9.8E-11 2.1E-15 106.2 5.5 80 593-697 3-82 (82)
141 PRK08074 bifunctional ATP-depe 99.0 1.6E-08 3.5E-13 132.1 24.2 161 564-730 740-921 (928)
142 PRK12903 secA preprotein trans 99.0 2.4E-07 5.2E-12 115.3 29.1 113 566-706 414-537 (925)
143 CHL00122 secA preprotein trans 98.9 7.2E-08 1.6E-12 120.5 23.7 119 300-424 76-206 (870)
144 COG0556 UvrB Helicase subunit 98.8 5.3E-08 1.1E-12 113.6 15.6 109 576-704 445-553 (663)
145 PF02399 Herpes_ori_bp: Origin 98.8 3.1E-07 6.7E-12 113.7 22.3 320 311-708 47-388 (824)
146 KOG0387 Transcription-coupled 98.8 1.5E-06 3.3E-11 105.5 27.2 126 564-712 535-662 (923)
147 PRK14873 primosome assembly pr 98.8 3.7E-08 8E-13 123.2 14.1 129 321-463 168-310 (665)
148 KOG0390 DNA repair protein, SN 98.6 6.7E-06 1.4E-10 102.5 26.9 106 581-710 598-709 (776)
149 KOG0384 Chromodomain-helicase 98.6 9.1E-07 2E-11 111.6 19.0 132 576-735 698-836 (1373)
150 PRK12902 secA preprotein trans 98.6 3.6E-06 7.9E-11 105.4 24.1 123 297-425 82-216 (939)
151 PRK11747 dinG ATP-dependent DN 98.6 3.4E-06 7.3E-11 107.4 24.5 130 563-704 522-671 (697)
152 COG1199 DinG Rad3-related DNA 98.5 6.8E-06 1.5E-10 104.6 23.3 148 564-721 467-635 (654)
153 TIGR00604 rad3 DNA repair heli 98.5 2.1E-06 4.6E-11 109.7 18.5 137 563-704 509-671 (705)
154 COG4889 Predicted helicase [Ge 98.4 2.4E-06 5.2E-11 103.9 14.1 77 608-702 499-578 (1518)
155 TIGR03117 cas_csf4 CRISPR-asso 98.3 3.3E-06 7.1E-11 104.8 13.7 61 304-367 7-67 (636)
156 cd00048 DSRM Double-stranded R 98.3 1.8E-06 3.8E-11 75.9 7.5 63 1106-1169 1-68 (68)
157 KOG0392 SNF2 family DNA-depend 98.2 4.4E-05 9.5E-10 96.6 18.9 112 578-711 1341-1457(1549)
158 smart00358 DSRM Double-strande 98.2 4.1E-06 9E-11 73.5 7.4 62 1107-1170 1-67 (67)
159 PF00035 dsrm: Double-stranded 98.2 3E-06 6.5E-11 74.5 5.9 63 1107-1169 1-67 (67)
160 KOG1000 Chromatin remodeling p 98.2 0.0019 4.1E-08 75.6 29.5 82 575-663 490-573 (689)
161 PHA02701 ORF020 dsRNA-binding 98.1 4.5E-06 9.7E-11 86.5 7.1 67 1105-1172 108-178 (183)
162 PF00176 SNF2_N: SNF2 family N 98.1 1.2E-05 2.6E-10 91.6 10.9 133 312-456 24-172 (299)
163 PHA03103 double-strand RNA-bin 98.1 5.6E-06 1.2E-10 86.5 7.3 66 1105-1171 109-177 (183)
164 COG0610 Type I site-specific r 98.0 0.00032 7E-09 92.0 21.7 135 314-456 274-413 (962)
165 TIGR00596 rad1 DNA repair prot 97.9 5.5E-05 1.2E-09 96.6 13.3 64 391-457 7-73 (814)
166 PF13401 AAA_22: AAA domain; P 97.9 2.8E-05 6E-10 77.5 7.0 119 311-455 2-125 (131)
167 PRK12371 ribonuclease III; Rev 97.8 3.2E-05 7E-10 85.5 7.3 67 1105-1171 161-231 (235)
168 KOG0389 SNF2 family DNA-depend 97.8 0.00069 1.5E-08 83.1 18.8 113 577-711 777-891 (941)
169 PF13245 AAA_19: Part of AAA d 97.8 5.6E-05 1.2E-09 68.7 7.3 60 306-366 3-62 (76)
170 PRK00102 rnc ribonuclease III; 97.7 5.7E-05 1.2E-09 83.4 7.4 67 1105-1171 158-228 (229)
171 KOG0952 DNA/RNA helicase MER3/ 97.7 1.2E-05 2.7E-10 100.4 2.0 153 314-470 944-1108(1230)
172 PF00448 SRP54: SRP54-type pro 97.7 0.00017 3.8E-09 77.7 10.3 128 314-461 2-130 (196)
173 PRK12723 flagellar biosynthesi 97.7 0.00035 7.6E-09 82.6 13.4 132 312-466 173-307 (388)
174 PRK12372 ribonuclease III; Rev 97.6 0.0001 2.2E-09 85.8 7.6 66 1105-1171 151-222 (413)
175 PRK14718 ribonuclease III; Pro 97.6 9.9E-05 2.1E-09 86.3 7.4 67 1105-1171 151-222 (467)
176 PF06862 DUF1253: Protein of u 97.6 0.0025 5.4E-08 76.1 18.8 117 574-712 297-419 (442)
177 PRK12901 secA preprotein trans 97.6 0.00026 5.6E-09 90.2 10.8 104 576-706 627-739 (1112)
178 COG0653 SecA Preprotein transl 97.5 0.0037 8.1E-08 78.9 19.7 122 297-424 77-210 (822)
179 PF13604 AAA_30: AAA domain; P 97.4 0.00033 7.2E-09 75.6 8.2 120 301-455 4-130 (196)
180 PF02562 PhoH: PhoH-like prote 97.4 0.00031 6.8E-09 75.9 7.2 58 297-357 3-60 (205)
181 TIGR01447 recD exodeoxyribonuc 97.4 0.0011 2.3E-08 82.9 12.9 138 302-454 149-294 (586)
182 KOG1002 Nucleotide excision re 97.4 0.023 5.1E-07 66.7 22.2 125 297-431 183-336 (791)
183 KOG1803 DNA helicase [Replicat 97.4 0.00038 8.3E-09 83.6 8.2 63 300-367 187-250 (649)
184 TIGR02191 RNaseIII ribonucleas 97.3 0.00038 8.2E-09 76.4 7.2 65 1104-1168 151-219 (220)
185 COG0571 Rnc dsRNA-specific rib 97.3 0.00048 1E-08 75.8 7.6 68 1105-1172 161-232 (235)
186 PF14709 DND1_DSRM: double str 97.3 0.00057 1.2E-08 62.7 6.9 65 1106-1170 2-80 (80)
187 KOG0386 Chromatin remodeling c 97.3 0.0024 5.1E-08 80.4 14.1 121 566-711 713-841 (1157)
188 PRK14722 flhF flagellar biosyn 97.3 0.002 4.4E-08 75.7 13.1 128 310-461 134-262 (374)
189 PRK10875 recD exonuclease V su 97.3 0.0013 2.8E-08 82.3 11.7 137 300-455 155-301 (615)
190 PRK05703 flhF flagellar biosyn 97.3 0.0032 7E-08 75.8 14.7 129 311-463 219-349 (424)
191 PRK11889 flhF flagellar biosyn 97.3 0.0031 6.7E-08 74.0 13.9 125 312-459 240-365 (436)
192 COG1419 FlhF Flagellar GTP-bin 97.3 0.0044 9.5E-08 72.6 14.8 130 313-466 203-333 (407)
193 PRK10536 hypothetical protein; 97.2 0.00084 1.8E-08 74.6 7.9 59 296-357 57-115 (262)
194 COG0553 HepA Superfamily II DN 97.2 0.015 3.3E-07 76.4 20.9 111 579-711 713-825 (866)
195 cd00009 AAA The AAA+ (ATPases 97.1 0.0048 1E-07 61.3 12.1 33 304-337 8-42 (151)
196 PRK06526 transposase; Provisio 97.1 0.0032 7E-08 70.7 11.2 29 308-336 93-121 (254)
197 PF09848 DUF2075: Uncharacteri 97.1 0.0015 3.2E-08 77.0 8.9 92 314-425 2-94 (352)
198 PF05729 NACHT: NACHT domain 97.1 0.0011 2.3E-08 68.4 6.6 61 417-477 84-151 (166)
199 TIGR01448 recD_rel helicase, p 97.0 0.0049 1.1E-07 79.1 13.7 127 295-455 320-452 (720)
200 PRK12726 flagellar biosynthesi 97.0 0.0038 8.3E-08 73.0 11.1 132 311-465 204-336 (407)
201 PRK12727 flagellar biosynthesi 96.9 0.0048 1E-07 75.0 11.4 129 310-462 347-475 (559)
202 KOG2340 Uncharacterized conser 96.9 0.017 3.7E-07 68.6 15.0 191 240-440 165-442 (698)
203 PRK12724 flagellar biosynthesi 96.9 0.0099 2.2E-07 70.6 13.2 129 312-466 222-357 (432)
204 PF13307 Helicase_C_2: Helicas 96.8 0.0011 2.4E-08 69.7 4.5 122 576-704 8-145 (167)
205 PRK15483 type III restriction- 96.8 0.0048 1E-07 79.5 10.5 140 311-458 57-240 (986)
206 PF05970 PIF1: PIF1-like helic 96.8 0.0045 9.8E-08 73.3 9.6 102 301-425 4-113 (364)
207 smart00489 DEXDc3 DEAD-like he 96.8 0.0032 7E-08 72.1 8.1 67 300-366 10-81 (289)
208 smart00488 DEXDc2 DEAD-like he 96.8 0.0032 7E-08 72.1 8.1 67 300-366 10-81 (289)
209 PRK14974 cell division protein 96.8 0.009 2E-07 69.6 11.6 125 313-457 140-265 (336)
210 PRK08181 transposase; Validate 96.6 0.024 5.3E-07 64.1 13.8 116 308-467 101-219 (269)
211 PF13086 AAA_11: AAA domain; P 96.6 0.0051 1.1E-07 67.0 7.9 69 300-368 3-75 (236)
212 KOG1802 RNA helicase nonsense 96.6 0.0043 9.3E-08 75.0 7.4 65 300-368 412-476 (935)
213 PF07517 SecA_DEAD: SecA DEAD- 96.5 0.0027 5.9E-08 71.4 5.1 103 317-425 94-208 (266)
214 TIGR02768 TraA_Ti Ti-type conj 96.5 0.016 3.5E-07 74.7 12.8 122 297-453 351-474 (744)
215 PRK04296 thymidine kinase; Pro 96.5 0.016 3.4E-07 62.4 10.7 26 313-338 2-27 (190)
216 PF00580 UvrD-helicase: UvrD/R 96.4 0.0046 9.9E-08 70.8 6.3 69 301-372 3-71 (315)
217 PHA03333 putative ATPase subun 96.4 0.078 1.7E-06 66.0 16.8 162 292-467 164-343 (752)
218 PRK09183 transposase/IS protei 96.3 0.093 2E-06 59.3 15.8 27 310-336 99-125 (259)
219 PRK14723 flhF flagellar biosyn 96.2 0.044 9.6E-07 69.7 13.7 126 312-462 184-311 (767)
220 PRK14721 flhF flagellar biosyn 96.2 0.037 8.1E-07 66.3 12.3 130 310-463 188-318 (420)
221 PRK13889 conjugal transfer rel 96.2 0.031 6.6E-07 73.4 12.5 125 296-455 344-470 (988)
222 PRK07003 DNA polymerase III su 96.1 0.023 5E-07 71.5 10.3 49 403-453 108-156 (830)
223 PF12340 DUF3638: Protein of u 96.1 0.028 6E-07 61.6 9.7 131 289-425 14-183 (229)
224 smart00382 AAA ATPases associa 96.1 0.011 2.5E-07 57.9 6.3 23 313-335 2-24 (148)
225 KOG4439 RNA polymerase II tran 96.1 0.15 3.2E-06 62.7 16.5 123 564-710 734-860 (901)
226 PRK06731 flhF flagellar biosyn 96.0 0.083 1.8E-06 59.9 13.3 125 312-460 74-200 (270)
227 PF13173 AAA_14: AAA domain 95.9 0.013 2.8E-07 58.7 5.9 26 312-337 1-26 (128)
228 PRK14956 DNA polymerase III su 95.9 0.013 2.7E-07 71.0 6.7 43 410-456 117-159 (484)
229 PRK06995 flhF flagellar biosyn 95.9 0.096 2.1E-06 63.8 14.0 128 311-462 254-382 (484)
230 PRK06835 DNA replication prote 95.9 0.046 1E-06 63.7 10.9 116 312-466 182-298 (329)
231 PRK10416 signal recognition pa 95.8 0.097 2.1E-06 60.8 13.3 128 312-459 113-247 (318)
232 PF13872 AAA_34: P-loop contai 95.8 0.041 8.9E-07 62.5 9.9 140 312-456 61-220 (303)
233 PF05127 Helicase_RecD: Helica 95.8 0.0023 5.1E-08 67.5 0.0 117 317-457 1-124 (177)
234 PRK07994 DNA polymerase III su 95.7 0.028 6.1E-07 70.6 9.0 47 404-452 109-155 (647)
235 PRK00771 signal recognition pa 95.7 0.093 2E-06 63.4 12.9 123 313-457 95-218 (437)
236 PRK14949 DNA polymerase III su 95.7 0.017 3.8E-07 73.9 6.7 41 410-452 115-155 (944)
237 TIGR03015 pepcterm_ATPase puta 95.6 0.041 8.8E-07 62.0 9.1 21 313-333 43-63 (269)
238 TIGR03499 FlhF flagellar biosy 95.6 0.046 1E-06 62.5 9.5 90 311-423 192-281 (282)
239 TIGR00376 DNA helicase, putati 95.6 0.025 5.4E-07 71.7 7.9 64 300-368 159-223 (637)
240 PRK08727 hypothetical protein; 95.6 0.043 9.4E-07 60.9 8.8 18 314-331 42-59 (233)
241 PRK12323 DNA polymerase III su 95.6 0.076 1.7E-06 66.2 11.5 44 409-454 119-162 (700)
242 PRK08691 DNA polymerase III su 95.5 0.048 1E-06 68.6 9.4 43 409-453 114-156 (709)
243 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.095 2.1E-06 57.4 10.9 24 312-335 37-60 (226)
244 PRK14961 DNA polymerase III su 95.4 0.038 8.1E-07 65.5 8.1 48 404-453 109-156 (363)
245 TIGR00064 ftsY signal recognit 95.4 0.09 2E-06 59.8 10.8 128 312-460 71-206 (272)
246 PRK08903 DnaA regulatory inact 95.4 0.085 1.8E-06 58.1 10.4 22 312-333 41-62 (227)
247 PRK14957 DNA polymerase III su 95.4 0.034 7.3E-07 68.8 7.8 50 402-453 107-156 (546)
248 TIGR02640 gas_vesic_GvpN gas v 95.4 0.069 1.5E-06 60.4 9.8 31 303-333 11-41 (262)
249 KOG0391 SNF2 family DNA-depend 95.4 0.08 1.7E-06 67.8 10.8 114 576-711 1275-1390(1958)
250 PRK13826 Dtr system oriT relax 95.4 0.094 2E-06 69.4 12.2 125 296-455 379-505 (1102)
251 PRK14964 DNA polymerase III su 95.3 0.048 1E-06 66.6 8.6 48 404-453 106-153 (491)
252 PF01695 IstB_IS21: IstB-like 95.3 0.033 7.1E-07 59.2 6.4 28 309-336 43-70 (178)
253 PRK09112 DNA polymerase III su 95.3 0.087 1.9E-06 62.1 10.4 50 403-454 130-179 (351)
254 PRK07952 DNA replication prote 95.2 0.11 2.3E-06 58.2 10.3 55 412-467 160-215 (244)
255 PRK14960 DNA polymerase III su 95.2 0.044 9.6E-07 68.4 7.9 37 1010-1046 611-647 (702)
256 TIGR01425 SRP54_euk signal rec 95.1 0.15 3.3E-06 61.2 11.9 123 313-456 100-224 (429)
257 PRK14958 DNA polymerase III su 95.1 0.044 9.5E-07 67.6 7.6 43 409-453 114-156 (509)
258 PRK08116 hypothetical protein; 95.0 0.077 1.7E-06 60.2 8.7 27 313-340 114-140 (268)
259 PRK07764 DNA polymerase III su 95.0 0.14 3E-06 66.5 12.0 43 409-453 115-157 (824)
260 PRK12402 replication factor C 95.0 0.098 2.1E-06 60.9 9.9 31 304-334 25-57 (337)
261 TIGR00678 holB DNA polymerase 94.9 0.084 1.8E-06 56.4 8.2 48 403-452 85-132 (188)
262 PRK10867 signal recognition pa 94.9 0.16 3.5E-06 61.3 11.4 125 313-456 100-225 (433)
263 PRK00411 cdc6 cell division co 94.8 0.16 3.4E-06 60.8 11.1 25 313-338 55-79 (394)
264 PRK00149 dnaA chromosomal repl 94.8 0.14 3.1E-06 62.4 10.9 36 314-352 149-184 (450)
265 cd01124 KaiC KaiC is a circadi 94.8 0.05 1.1E-06 57.6 6.1 36 315-353 1-36 (187)
266 PRK14952 DNA polymerase III su 94.8 0.13 2.7E-06 64.5 10.3 47 405-453 109-155 (584)
267 PRK06893 DNA replication initi 94.8 0.13 2.8E-06 56.9 9.5 47 412-460 89-138 (229)
268 PRK14969 DNA polymerase III su 94.7 0.078 1.7E-06 65.8 8.3 48 404-453 109-156 (527)
269 TIGR02928 orc1/cdc6 family rep 94.6 0.17 3.7E-06 59.8 10.7 25 313-338 40-64 (365)
270 PRK05642 DNA replication initi 94.6 0.11 2.4E-06 57.7 8.6 24 314-338 46-69 (234)
271 PHA02244 ATPase-like protein 94.6 0.2 4.3E-06 58.8 10.6 31 303-333 109-139 (383)
272 PRK09111 DNA polymerase III su 94.5 0.21 4.6E-06 62.8 11.4 50 402-453 120-169 (598)
273 PRK14963 DNA polymerase III su 94.5 0.088 1.9E-06 64.9 7.9 45 406-452 108-152 (504)
274 PRK11331 5-methylcytosine-spec 94.5 0.15 3.2E-06 61.4 9.5 30 303-332 184-213 (459)
275 cd03115 SRP The signal recogni 94.4 0.33 7.2E-06 51.0 11.3 124 315-458 2-126 (173)
276 TIGR00959 ffh signal recogniti 94.4 0.26 5.6E-06 59.5 11.5 124 314-456 100-224 (428)
277 COG1444 Predicted P-loop ATPas 94.4 0.16 3.4E-06 64.4 9.9 121 314-457 232-357 (758)
278 PTZ00112 origin recognition co 94.4 0.27 5.8E-06 62.9 11.8 25 314-339 782-806 (1164)
279 PF03354 Terminase_1: Phage Te 94.4 0.11 2.4E-06 63.8 8.7 136 314-456 23-164 (477)
280 PRK14087 dnaA chromosomal repl 94.4 0.28 6E-06 59.9 11.9 38 314-354 142-179 (450)
281 PRK14951 DNA polymerase III su 94.3 0.098 2.1E-06 65.7 7.9 49 403-453 113-161 (618)
282 PRK14962 DNA polymerase III su 94.3 0.19 4E-06 61.6 10.2 29 306-334 26-57 (472)
283 PRK07471 DNA polymerase III su 94.2 0.25 5.4E-06 58.6 10.6 62 393-456 120-181 (365)
284 PRK08084 DNA replication initi 94.2 0.14 3E-06 57.0 8.1 21 313-333 45-65 (235)
285 TIGR00362 DnaA chromosomal rep 94.1 0.32 7E-06 58.5 11.7 38 313-353 136-173 (405)
286 PRK14965 DNA polymerase III su 94.1 0.16 3.5E-06 63.8 9.4 50 402-453 107-156 (576)
287 TIGR02881 spore_V_K stage V sp 94.1 0.27 5.8E-06 55.5 10.3 21 313-333 42-62 (261)
288 PHA03368 DNA packaging termina 94.1 0.58 1.3E-05 58.4 13.6 148 302-466 244-400 (738)
289 PRK06645 DNA polymerase III su 94.1 0.13 2.8E-06 63.3 8.2 38 403-442 117-154 (507)
290 PRK08451 DNA polymerase III su 94.1 0.16 3.4E-06 62.8 8.9 43 409-453 112-154 (535)
291 TIGR02782 TrbB_P P-type conjug 94.1 0.1 2.2E-06 60.2 6.8 52 304-358 123-174 (299)
292 COG1875 NYN ribonuclease and A 94.1 0.26 5.7E-06 56.9 9.9 60 295-356 225-286 (436)
293 PRK13833 conjugal transfer pro 94.1 0.082 1.8E-06 61.4 6.1 52 304-358 135-186 (323)
294 PF01637 Arch_ATPase: Archaeal 94.0 0.091 2E-06 57.1 6.2 28 304-331 9-38 (234)
295 TIGR02760 TraI_TIGR conjugativ 94.0 0.31 6.6E-06 69.1 12.7 138 296-455 427-566 (1960)
296 KOG3732 Staufen and related do 94.0 0.14 3E-06 58.4 7.5 67 1103-1170 140-210 (339)
297 PRK11054 helD DNA helicase IV; 94.0 0.27 5.8E-06 62.9 11.1 83 286-371 184-266 (684)
298 PF13177 DNA_pol3_delta2: DNA 94.0 0.1 2.2E-06 54.6 6.2 52 403-456 91-142 (162)
299 PRK14959 DNA polymerase III su 93.9 0.14 3.1E-06 64.0 8.1 30 305-334 27-59 (624)
300 COG1474 CDC6 Cdc6-related prot 93.9 0.21 4.6E-06 59.1 9.2 29 315-344 44-72 (366)
301 cd01120 RecA-like_NTPases RecA 93.9 0.23 5.1E-06 50.5 8.5 23 315-337 1-23 (165)
302 COG1484 DnaC DNA replication p 93.8 1.1 2.4E-05 50.4 14.4 119 305-466 97-218 (254)
303 PRK08939 primosomal protein Dn 93.8 0.74 1.6E-05 53.3 13.2 113 312-465 155-269 (306)
304 PRK12377 putative replication 93.8 0.67 1.5E-05 52.0 12.4 26 313-339 101-126 (248)
305 PRK08533 flagellar accessory p 93.7 0.21 4.6E-06 55.4 8.3 41 310-353 21-61 (230)
306 PHA02533 17 large terminase pr 93.7 0.44 9.5E-06 59.2 11.9 155 296-465 57-219 (534)
307 PRK05563 DNA polymerase III su 93.6 0.17 3.7E-06 63.4 8.2 38 403-442 108-145 (559)
308 PRK05896 DNA polymerase III su 93.6 0.15 3.2E-06 63.7 7.5 48 404-453 109-156 (605)
309 PF05621 TniB: Bacterial TniB 93.6 0.19 4E-06 57.4 7.7 122 314-456 62-189 (302)
310 PRK14950 DNA polymerase III su 93.5 0.16 3.4E-06 64.1 7.8 47 404-452 110-156 (585)
311 PF00004 AAA: ATPase family as 93.5 0.063 1.4E-06 53.0 3.5 16 316-331 1-16 (132)
312 PRK00440 rfc replication facto 93.5 0.7 1.5E-05 53.3 12.7 19 315-333 40-58 (319)
313 COG3421 Uncharacterized protei 93.5 0.39 8.4E-06 58.4 10.3 136 319-457 3-166 (812)
314 COG2804 PulE Type II secretory 93.5 0.21 4.5E-06 60.3 8.3 31 304-334 248-279 (500)
315 PRK12900 secA preprotein trans 93.5 0.093 2E-06 67.8 5.6 115 305-425 143-269 (1025)
316 PRK06921 hypothetical protein; 93.4 0.74 1.6E-05 52.2 12.3 27 312-339 116-142 (266)
317 PF05496 RuvB_N: Holliday junc 93.3 0.37 8.1E-06 52.8 9.2 18 314-331 51-68 (233)
318 PHA02544 44 clamp loader, smal 93.2 0.48 1E-05 54.9 10.7 19 315-333 45-63 (316)
319 COG2256 MGS1 ATPase related to 93.1 0.52 1.1E-05 55.3 10.4 36 414-456 104-140 (436)
320 PRK14948 DNA polymerase III su 93.1 0.25 5.5E-06 62.5 8.7 41 1005-1045 465-506 (620)
321 KOG1805 DNA replication helica 93.1 0.2 4.2E-06 63.9 7.4 64 300-368 672-735 (1100)
322 PRK05707 DNA polymerase III su 93.1 0.14 3.1E-06 59.7 6.0 50 403-454 95-144 (328)
323 PRK07133 DNA polymerase III su 93.0 0.2 4.3E-06 63.7 7.6 50 402-453 106-155 (725)
324 PF00308 Bac_DnaA: Bacterial d 93.0 0.26 5.6E-06 54.2 7.7 103 314-456 35-140 (219)
325 PRK14955 DNA polymerase III su 93.0 0.4 8.6E-06 57.6 9.9 29 306-334 28-59 (397)
326 TIGR02397 dnaX_nterm DNA polym 93.0 0.75 1.6E-05 54.0 12.0 49 402-452 105-153 (355)
327 KOG0391 SNF2 family DNA-depend 93.0 0.28 6.1E-06 63.1 8.5 121 301-425 618-748 (1958)
328 TIGR02880 cbbX_cfxQ probable R 93.0 0.56 1.2E-05 53.7 10.5 21 313-333 58-78 (284)
329 PRK14953 DNA polymerase III su 92.9 0.63 1.4E-05 57.3 11.5 48 402-451 107-154 (486)
330 TIGR03878 thermo_KaiC_2 KaiC d 92.9 0.2 4.4E-06 56.5 6.8 41 310-353 33-73 (259)
331 KOG2373 Predicted mitochondria 92.9 0.036 7.9E-07 62.8 0.7 37 304-340 264-300 (514)
332 TIGR03345 VI_ClpV1 type VI sec 92.9 0.51 1.1E-05 62.0 11.3 120 315-465 598-727 (852)
333 KOG1131 RNA polymerase II tran 92.9 0.61 1.3E-05 55.8 10.6 60 301-360 23-84 (755)
334 KOG2777 tRNA-specific adenosin 92.8 0.21 4.7E-06 60.6 7.1 64 1104-1173 89-156 (542)
335 PRK14088 dnaA chromosomal repl 92.7 1.2 2.5E-05 54.4 13.3 38 314-354 131-168 (440)
336 PF01443 Viral_helicase1: Vira 92.7 0.12 2.6E-06 56.8 4.5 20 316-335 1-20 (234)
337 TIGR01547 phage_term_2 phage t 92.7 0.58 1.3E-05 56.1 10.6 134 314-457 2-141 (396)
338 KOG0989 Replication factor C, 92.6 0.4 8.6E-06 54.4 8.3 44 411-456 126-169 (346)
339 PRK07940 DNA polymerase III su 92.5 0.89 1.9E-05 54.5 11.7 50 403-455 106-155 (394)
340 COG3587 Restriction endonuclea 92.5 0.41 8.9E-06 60.4 8.9 48 312-362 73-120 (985)
341 CHL00181 cbbX CbbX; Provisiona 92.5 1.8 3.8E-05 49.8 13.7 23 312-334 58-80 (287)
342 PRK06067 flagellar accessory p 92.4 0.39 8.5E-06 53.2 8.1 29 310-338 22-50 (234)
343 COG0470 HolB ATPase involved i 92.4 0.31 6.6E-06 56.3 7.6 44 409-454 104-147 (325)
344 PRK14954 DNA polymerase III su 92.4 0.31 6.6E-06 61.5 7.9 48 404-453 117-164 (620)
345 PRK12901 secA preprotein trans 92.3 0.2 4.3E-06 65.0 6.1 113 304-425 173-301 (1112)
346 PRK13342 recombination factor 92.3 0.54 1.2E-05 56.8 9.7 20 314-333 37-56 (413)
347 COG3973 Superfamily I DNA and 92.2 0.23 5.1E-06 60.5 6.2 70 300-372 214-285 (747)
348 KOG0388 SNF2 family DNA-depend 92.2 0.7 1.5E-05 57.0 10.1 114 576-711 1043-1157(1185)
349 PRK10919 ATP-dependent DNA hel 92.2 0.25 5.4E-06 63.3 7.0 69 300-371 4-72 (672)
350 PRK13894 conjugal transfer ATP 92.2 0.25 5.5E-06 57.4 6.4 53 303-358 138-190 (319)
351 PF00437 T2SE: Type II/IV secr 92.1 0.14 3E-06 58.1 4.1 46 306-356 120-165 (270)
352 PRK06620 hypothetical protein; 92.1 0.33 7.2E-06 53.2 6.9 18 314-331 45-62 (214)
353 PRK14971 DNA polymerase III su 92.0 0.56 1.2E-05 59.4 9.7 50 403-455 110-159 (614)
354 PRK14712 conjugal transfer nic 92.0 2 4.4E-05 59.2 15.3 126 298-455 835-967 (1623)
355 PRK06647 DNA polymerase III su 92.0 0.39 8.3E-06 60.2 8.2 34 406-441 111-144 (563)
356 PRK12422 chromosomal replicati 91.9 0.41 8.8E-06 58.3 8.0 35 314-353 142-176 (445)
357 PRK09087 hypothetical protein; 91.9 1 2.2E-05 49.8 10.5 19 313-331 44-62 (226)
358 PRK13851 type IV secretion sys 91.8 0.2 4.2E-06 58.9 5.0 47 306-358 155-201 (344)
359 TIGR02639 ClpA ATP-dependent C 91.8 0.89 1.9E-05 59.0 11.4 35 298-332 183-222 (731)
360 PRK10865 protein disaggregatio 91.7 1.3 2.8E-05 58.4 12.9 121 315-466 600-730 (857)
361 PRK13900 type IV secretion sys 91.7 0.2 4.3E-06 58.7 4.8 46 306-357 153-198 (332)
362 PF00931 NB-ARC: NB-ARC domain 91.7 0.25 5.4E-06 56.1 5.6 68 304-373 6-77 (287)
363 PLN03025 replication factor C 91.7 1.2 2.6E-05 51.9 11.3 21 314-334 35-55 (319)
364 PRK14970 DNA polymerase III su 91.6 0.61 1.3E-05 55.3 9.0 29 305-333 28-59 (367)
365 PRK07399 DNA polymerase III su 91.6 1.4 3E-05 51.3 11.7 53 400-455 110-162 (314)
366 PRK11823 DNA repair protein Ra 91.3 0.35 7.7E-06 58.9 6.7 50 310-365 77-126 (446)
367 KOG1132 Helicase of the DEAD s 91.2 1.1 2.3E-05 57.1 10.6 35 390-425 221-258 (945)
368 PRK06871 DNA polymerase III su 91.0 0.59 1.3E-05 54.5 7.8 51 403-455 96-146 (325)
369 PRK04195 replication factor C 91.0 1.4 3.1E-05 54.3 11.5 21 313-333 39-59 (482)
370 cd01130 VirB11-like_ATPase Typ 90.9 0.31 6.6E-06 52.1 5.0 32 304-336 16-47 (186)
371 PRK08058 DNA polymerase III su 90.9 0.56 1.2E-05 54.9 7.6 49 404-454 100-148 (329)
372 COG1435 Tdk Thymidine kinase [ 90.7 1.1 2.3E-05 48.1 8.6 123 313-465 4-127 (201)
373 PRK13709 conjugal transfer nic 90.7 3.9 8.3E-05 57.3 16.2 127 297-455 966-1099(1747)
374 PRK14086 dnaA chromosomal repl 90.7 0.71 1.5E-05 57.8 8.5 36 314-352 315-350 (617)
375 COG0556 UvrB Helicase subunit 90.6 0.56 1.2E-05 56.5 7.0 61 313-384 32-92 (663)
376 TIGR01074 rep ATP-dependent DN 90.6 0.51 1.1E-05 60.6 7.5 105 301-424 4-111 (664)
377 PF06745 KaiC: KaiC; InterPro 90.4 0.45 9.8E-06 52.3 5.9 41 311-353 17-57 (226)
378 TIGR02524 dot_icm_DotB Dot/Icm 90.4 0.47 1E-05 56.1 6.3 32 306-338 126-158 (358)
379 PRK08769 DNA polymerase III su 90.3 1 2.2E-05 52.4 8.9 52 402-455 101-152 (319)
380 PRK13341 recombination factor 90.2 1.7 3.6E-05 56.1 11.4 20 314-333 53-72 (725)
381 COG4626 Phage terminase-like p 90.2 1.7 3.8E-05 53.1 10.9 151 296-455 59-224 (546)
382 TIGR02655 circ_KaiC circadian 90.1 0.62 1.3E-05 57.5 7.3 51 310-366 260-310 (484)
383 KOG3732 Staufen and related do 89.9 1.1 2.5E-05 51.1 8.5 67 1105-1173 38-108 (339)
384 TIGR01075 uvrD DNA helicase II 89.8 0.49 1.1E-05 61.3 6.4 69 300-371 6-74 (715)
385 PTZ00293 thymidine kinase; Pro 89.7 1.2 2.7E-05 48.5 8.3 27 312-338 3-29 (211)
386 PRK11773 uvrD DNA-dependent he 89.4 0.67 1.4E-05 60.1 7.2 70 299-371 10-79 (721)
387 TIGR02760 TraI_TIGR conjugativ 89.3 1.8 3.9E-05 61.7 11.6 124 297-455 1018-1149(1960)
388 cd01393 recA_like RecA is a b 89.2 0.49 1.1E-05 51.9 5.0 29 310-338 16-44 (226)
389 PRK04841 transcriptional regul 89.2 1.2 2.5E-05 59.3 9.4 32 303-334 19-53 (903)
390 COG0552 FtsY Signal recognitio 89.2 2.6 5.7E-05 48.7 10.8 134 313-466 139-281 (340)
391 PF03237 Terminase_6: Terminas 89.0 3.6 7.9E-05 47.9 12.5 131 317-456 1-137 (384)
392 COG1618 Predicted nucleotide k 88.8 2 4.4E-05 44.6 8.6 111 314-443 6-129 (179)
393 TIGR00763 lon ATP-dependent pr 88.7 3.7 8E-05 53.8 13.3 20 312-331 346-365 (775)
394 TIGR03877 thermo_KaiC_1 KaiC d 88.7 0.75 1.6E-05 51.2 6.0 51 310-366 18-68 (237)
395 PRK06305 DNA polymerase III su 88.6 1.3 2.8E-05 54.2 8.4 30 305-334 28-60 (451)
396 TIGR02525 plasmid_TraJ plasmid 88.6 0.77 1.7E-05 54.5 6.3 39 311-352 147-185 (372)
397 cd01129 PulE-GspE PulE/GspE Th 88.5 0.59 1.3E-05 53.0 5.1 32 305-337 71-103 (264)
398 COG1221 PspF Transcriptional r 88.4 3.1 6.6E-05 49.7 11.0 22 311-332 99-120 (403)
399 TIGR00767 rho transcription te 88.3 0.33 7.2E-06 57.6 3.0 28 310-338 165-192 (415)
400 PRK06964 DNA polymerase III su 88.3 0.9 2E-05 53.3 6.5 54 400-455 118-171 (342)
401 COG4962 CpaF Flp pilus assembl 88.2 0.87 1.9E-05 52.7 6.2 49 305-359 165-213 (355)
402 cd01121 Sms Sms (bacterial rad 87.9 1.2 2.5E-05 53.1 7.3 29 310-338 79-107 (372)
403 PHA00729 NTP-binding motif con 87.9 0.94 2E-05 49.9 6.0 20 314-333 18-37 (226)
404 COG2255 RuvB Holliday junction 87.9 1.1 2.3E-05 50.6 6.3 38 399-439 91-129 (332)
405 TIGR01420 pilT_fam pilus retra 87.8 0.65 1.4E-05 54.7 5.1 26 312-338 121-146 (343)
406 PRK11034 clpA ATP-dependent Cl 87.8 4 8.6E-05 53.0 12.5 19 313-331 207-225 (758)
407 PF13555 AAA_29: P-loop contai 87.8 0.57 1.2E-05 41.0 3.4 19 313-331 23-41 (62)
408 PRK10787 DNA-binding ATP-depen 87.8 4.7 0.0001 52.7 13.2 32 300-331 328-367 (784)
409 COG2805 PilT Tfp pilus assembl 87.7 0.42 9E-06 54.1 3.1 26 312-338 124-149 (353)
410 PF03368 Dicer_dimer: Dicer di 87.7 0.71 1.5E-05 43.5 4.3 51 1120-1171 19-73 (90)
411 PF13207 AAA_17: AAA domain; P 87.6 0.46 1E-05 46.4 3.2 18 315-332 1-18 (121)
412 PRK05973 replicative DNA helic 87.6 0.61 1.3E-05 51.9 4.4 35 304-338 55-89 (237)
413 PHA00149 DNA encapsidation pro 87.5 5.4 0.00012 45.0 11.5 143 316-466 20-171 (331)
414 TIGR02974 phageshock_pspF psp 87.5 3 6.6E-05 48.8 10.4 27 304-330 13-39 (329)
415 KOG2028 ATPase related to the 87.5 1.8 4E-05 50.0 8.0 29 306-334 153-183 (554)
416 COG3267 ExeA Type II secretory 87.4 2.5 5.5E-05 47.1 8.9 61 305-370 42-103 (269)
417 TIGR00635 ruvB Holliday juncti 87.4 1.6 3.4E-05 50.3 7.9 19 314-332 31-49 (305)
418 PF12846 AAA_10: AAA-like doma 87.4 0.71 1.5E-05 52.4 5.0 41 313-358 1-41 (304)
419 PRK07993 DNA polymerase III su 87.4 1.1 2.4E-05 52.6 6.6 52 402-455 96-147 (334)
420 PRK05564 DNA polymerase III su 87.3 2.3 5E-05 49.4 9.1 44 408-453 87-130 (313)
421 TIGR03346 chaperone_ClpB ATP-d 87.1 4.6 9.9E-05 53.5 12.8 60 400-465 657-726 (852)
422 COG0467 RAD55 RecA-superfamily 87.1 1.1 2.3E-05 50.6 6.1 58 310-374 20-77 (260)
423 cd01131 PilT Pilus retraction 87.0 0.48 1E-05 51.2 3.2 24 314-338 2-25 (198)
424 PRK04328 hypothetical protein; 87.0 1.1 2.3E-05 50.4 6.0 39 311-352 21-59 (249)
425 PRK03992 proteasome-activating 86.9 2.8 6.1E-05 50.3 9.8 19 313-331 165-183 (389)
426 PRK00080 ruvB Holliday junctio 86.8 1 2.2E-05 52.6 6.0 19 313-331 51-69 (328)
427 COG2812 DnaX DNA polymerase II 86.7 0.35 7.5E-06 59.3 2.0 52 402-457 107-158 (515)
428 TIGR02688 conserved hypothetic 86.6 1.8 4E-05 51.8 7.7 29 308-336 204-232 (449)
429 PLN03187 meiotic recombination 86.4 1.1 2.5E-05 52.5 6.0 30 310-339 123-152 (344)
430 COG0541 Ffh Signal recognition 86.3 5.4 0.00012 47.7 11.4 135 313-466 100-236 (451)
431 TIGR02788 VirB11 P-type DNA tr 86.2 0.86 1.9E-05 52.8 4.9 25 307-331 138-162 (308)
432 KOG2228 Origin recognition com 85.9 11 0.00024 43.7 13.0 129 312-458 48-183 (408)
433 KOG0741 AAA+-type ATPase [Post 85.8 3.5 7.6E-05 50.0 9.4 103 315-459 540-652 (744)
434 cd01128 rho_factor Transcripti 85.7 0.53 1.2E-05 52.8 2.7 27 310-337 13-39 (249)
435 TIGR00602 rad24 checkpoint pro 85.5 3 6.5E-05 52.9 9.4 23 312-334 109-131 (637)
436 CHL00176 ftsH cell division pr 85.4 4.3 9.4E-05 51.7 10.8 20 313-332 216-235 (638)
437 PRK06090 DNA polymerase III su 85.3 3 6.4E-05 48.6 8.6 51 403-455 97-147 (319)
438 CHL00095 clpC Clp protease ATP 85.3 3.1 6.6E-05 54.9 9.8 22 312-333 199-220 (821)
439 TIGR01243 CDC48 AAA family ATP 85.3 2.4 5.2E-05 55.2 8.8 20 313-332 487-506 (733)
440 PRK13695 putative NTPase; Prov 85.2 4.1 8.9E-05 42.8 9.1 23 315-338 2-24 (174)
441 PF13671 AAA_33: AAA domain; P 85.2 0.72 1.6E-05 46.4 3.2 20 315-334 1-20 (143)
442 PRK10436 hypothetical protein; 85.2 1.1 2.4E-05 54.8 5.2 32 306-338 210-242 (462)
443 KOG0733 Nuclear AAA ATPase (VC 85.1 1.1 2.3E-05 55.0 5.0 18 313-330 545-562 (802)
444 COG1126 GlnQ ABC-type polar am 85.1 0.51 1.1E-05 51.2 2.0 21 310-330 25-45 (240)
445 PF05894 Podovirus_Gp16: Podov 84.9 7.5 0.00016 44.6 11.2 133 313-455 17-160 (333)
446 TIGR01073 pcrA ATP-dependent D 84.9 1.5 3.3E-05 56.9 6.7 105 300-424 6-113 (726)
447 cd00267 ABC_ATPase ABC (ATP-bi 84.8 0.88 1.9E-05 47.0 3.7 21 311-331 23-43 (157)
448 cd00984 DnaB_C DnaB helicase C 84.7 0.74 1.6E-05 51.0 3.3 34 306-339 6-39 (242)
449 COG3598 RepA RecA-family ATPas 84.7 4.1 8.8E-05 46.8 8.9 149 305-456 81-242 (402)
450 PF12775 AAA_7: P-loop contain 84.6 1.1 2.4E-05 50.9 4.7 25 309-333 29-53 (272)
451 COG1074 RecB ATP-dependent exo 84.6 1.2 2.7E-05 60.4 5.9 63 310-372 13-75 (1139)
452 TIGR02538 type_IV_pilB type IV 84.6 1.1 2.3E-05 56.4 5.0 34 304-338 306-340 (564)
453 TIGR02655 circ_KaiC circadian 84.6 1.6 3.4E-05 54.0 6.3 42 310-353 18-59 (484)
454 PF13238 AAA_18: AAA domain; P 84.5 0.63 1.4E-05 45.6 2.3 16 316-331 1-16 (129)
455 cd03247 ABCC_cytochrome_bd The 84.5 2.5 5.3E-05 44.7 7.0 22 310-331 25-46 (178)
456 TIGR02785 addA_Gpos recombinat 84.4 1.7 3.8E-05 59.6 7.2 132 303-439 6-140 (1232)
457 TIGR03881 KaiC_arch_4 KaiC dom 84.4 1.8 3.8E-05 47.7 6.0 29 310-338 17-45 (229)
458 KOG1969 DNA replication checkp 84.2 4.9 0.00011 50.6 10.1 19 313-331 326-344 (877)
459 TIGR03689 pup_AAA proteasome A 84.2 2.1 4.6E-05 52.8 7.1 23 313-336 216-238 (512)
460 PRK13764 ATPase; Provisional 84.2 0.99 2.2E-05 56.6 4.3 28 311-339 255-282 (602)
461 COG0630 VirB11 Type IV secreto 84.1 1 2.2E-05 52.4 4.1 41 306-352 136-176 (312)
462 cd02034 CooC The accessory pro 84.1 7.1 0.00015 38.6 9.5 36 316-354 2-37 (116)
463 TIGR02639 ClpA ATP-dependent C 83.9 4.4 9.4E-05 52.8 10.2 18 315-332 486-503 (731)
464 PF05876 Terminase_GpA: Phage 83.9 0.7 1.5E-05 57.9 2.9 68 298-369 16-86 (557)
465 TIGR03263 guanyl_kin guanylate 83.9 0.85 1.8E-05 48.1 3.1 20 313-332 1-20 (180)
466 cd03221 ABCF_EF-3 ABCF_EF-3 E 83.9 3.4 7.5E-05 42.2 7.5 22 310-331 23-44 (144)
467 PF10443 RNA12: RNA12 protein; 83.9 2 4.3E-05 51.3 6.4 53 415-467 149-205 (431)
468 TIGR02237 recomb_radB DNA repa 83.7 1.8 3.9E-05 46.9 5.7 28 311-338 10-37 (209)
469 KOG2036 Predicted P-loop ATPas 83.5 13 0.00028 46.5 12.9 125 313-458 275-413 (1011)
470 COG0593 DnaA ATPase involved i 83.2 5 0.00011 48.1 9.4 37 313-352 113-149 (408)
471 PF03969 AFG1_ATPase: AFG1-lik 82.8 3.4 7.3E-05 49.1 7.8 111 312-461 61-173 (362)
472 TIGR02533 type_II_gspE general 82.5 1.5 3.3E-05 54.0 5.0 31 306-337 234-265 (486)
473 cd01394 radB RadB. The archaea 82.3 1.5 3.3E-05 47.8 4.4 29 310-338 16-44 (218)
474 PRK00300 gmk guanylate kinase; 82.2 1.1 2.4E-05 48.4 3.2 23 311-333 3-25 (205)
475 PF01580 FtsK_SpoIIIE: FtsK/Sp 82.2 1.6 3.4E-05 47.3 4.4 43 311-354 36-78 (205)
476 KOG0738 AAA+-type ATPase [Post 82.2 5.3 0.00011 46.9 8.7 46 283-330 216-262 (491)
477 CHL00095 clpC Clp protease ATP 81.7 4.6 9.9E-05 53.3 9.2 56 400-461 601-666 (821)
478 PF00265 TK: Thymidine kinase; 81.7 2.1 4.5E-05 45.6 5.0 37 314-355 2-38 (176)
479 cd03228 ABCC_MRP_Like The MRP 81.7 2.5 5.4E-05 44.4 5.6 21 310-330 25-45 (171)
480 TIGR03880 KaiC_arch_3 KaiC dom 81.6 2.5 5.5E-05 46.3 5.9 50 311-366 14-63 (224)
481 TIGR03345 VI_ClpV1 type VI sec 81.6 4.3 9.3E-05 53.6 8.9 34 298-331 188-226 (852)
482 TIGR01650 PD_CobS cobaltochela 81.4 1.9 4E-05 50.2 4.8 32 304-335 55-86 (327)
483 PRK08233 hypothetical protein; 81.3 1.2 2.6E-05 46.8 3.1 22 313-334 3-24 (182)
484 cd03281 ABC_MSH5_euk MutS5 hom 81.2 11 0.00024 41.3 10.6 22 314-335 30-51 (213)
485 PF07728 AAA_5: AAA domain (dy 81.1 1.3 2.8E-05 44.6 3.1 18 315-332 1-18 (139)
486 PRK10917 ATP-dependent DNA hel 81.1 3.1 6.6E-05 53.7 7.2 79 576-657 309-388 (681)
487 TIGR01817 nifA Nif-specific re 81.1 7.6 0.00016 48.6 10.5 27 304-330 210-236 (534)
488 COG1110 Reverse gyrase [DNA re 81.1 2.5 5.3E-05 54.9 6.0 68 576-644 124-191 (1187)
489 COG1222 RPT1 ATP-dependent 26S 81.0 8.7 0.00019 44.9 9.8 20 311-330 183-202 (406)
490 PRK05917 DNA polymerase III su 81.0 7.3 0.00016 44.7 9.4 53 402-456 83-135 (290)
491 COG3839 MalK ABC-type sugar tr 81.0 0.87 1.9E-05 53.1 2.0 21 310-330 26-46 (338)
492 COG2909 MalT ATP-dependent tra 81.0 3.6 7.7E-05 52.7 7.4 36 300-335 21-59 (894)
493 KOG0733 Nuclear AAA ATPase (VC 80.7 1.6 3.4E-05 53.7 4.0 18 312-329 222-239 (802)
494 PRK11034 clpA ATP-dependent Cl 80.6 4.2 9.2E-05 52.8 8.1 18 315-332 490-507 (758)
495 cd00071 GMPK Guanosine monopho 80.5 1.3 2.8E-05 45.0 2.8 17 316-332 2-18 (137)
496 PRK05580 primosome assembly pr 80.4 2.9 6.3E-05 53.8 6.7 74 577-657 190-263 (679)
497 COG1219 ClpX ATP-dependent pro 80.4 0.95 2.1E-05 51.6 2.0 19 312-330 96-114 (408)
498 KOG0744 AAA+-type ATPase [Post 80.4 1.9 4.2E-05 49.3 4.3 20 309-328 173-192 (423)
499 TIGR00750 lao LAO/AO transport 80.3 2.6 5.6E-05 48.7 5.6 41 311-354 32-72 (300)
500 PRK08699 DNA polymerase III su 80.3 3.1 6.7E-05 48.7 6.3 51 402-454 101-151 (325)
No 1
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=8.9e-149 Score=1360.85 Aligned_cols=874 Identities=47% Similarity=0.761 Sum_probs=775.3
Q ss_pred chhHHHHHHHhhhcCCCccceecccccCcccHHHHHHHHHHhcccccccc--eEEEeecCCCCCCccCCCcCC--Ccccc
Q 000991 132 NIDEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYA--KVVVFSKAPLPNYRSDLDEKR--PQREV 207 (1197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~ 207 (1197)
++..|.++.++.......+|++....+++.+++.|+++...++.++..+. ...++++.+.|++..+++... ++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (924)
T KOG0920|consen 23 DSHAWLRDSSSSKEMTDDDEVIRALTQSRLPKNLLEKLIQIARSSSTAKNLMKFHTVSKITEPSRLLDLSPKPMTLQAKL 102 (924)
T ss_pred cccccccCccccccccCcceeehhccccCcccccchHHHHHHHhhhhhhhcccceeeeccCCCCceeeecccccchhhhh
Confidence 78888777775445566689999999999999999999999999866664 578999999999999988875 77788
Q ss_pred ccCccchHHHHHHHHHHHhhhhhcccccccccCCCCCCCCcchhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 000991 208 ILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGSTTNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESPEG 287 (1197)
Q Consensus 208 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~l~~~~~~~~~s~~~ 287 (1197)
....+...+...++..+.+... .. ....... .....+ ..++..... +.. .+..+..+..|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~----~~d~~~~~~----------s~~---~~~~~~~s~~~ 162 (924)
T KOG0920|consen 103 KLKAEAENKAAALVCKLLESLK-LV-DRNNENL-LLPTTG----QKDEPLLKK----------SIS---RQSEPKKSESY 162 (924)
T ss_pred eecccccchhHHHHHHHHHHhc-cC-CCccccc-cccccc----ccccccCcc----------hhh---hhchhhhhhHH
Confidence 8888888888888777765543 10 0000000 111100 010000000 000 55677889999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHH
Q 000991 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1197)
Q Consensus 288 ~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa 367 (1197)
+++++.|.+||+|+++++|+++|.++++++|+|+||||||||+|||||+..+..+ +.|+|+||||||++|+++|+||+
T Consensus 163 ~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa 240 (924)
T KOG0920|consen 163 KEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVA 240 (924)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765 78999999999999999999999
Q ss_pred HHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccc
Q 000991 368 AERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1197)
Q Consensus 368 ~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~l 447 (1197)
.|+++.+|..|||+||.++..+..+.|+|||+|+||+.|+.++.+.+++|||+||||||++++||++.+++.++..+|++
T Consensus 241 ~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 241 KERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred HHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhh
Q 000991 448 RLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1197)
Q Consensus 448 klIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~ 527 (1197)
|+|+||||+|++.|++||++||+++|+|++|||..+|+||++..++|........ .+.+..
T Consensus 321 kvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~--~~~~~~----------------- 381 (924)
T KOG0920|consen 321 KVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR--SGPERS----------------- 381 (924)
T ss_pred eEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc--cccccC-----------------
Confidence 9999999999999999999999999999999999999999999998776543322 000000
Q ss_pred HHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCC
Q 000991 528 ASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPS 607 (1197)
Q Consensus 528 ~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~ 607 (1197)
.+. ...+..|.++ ++++++..++.+|+.....|+||||+||+++|..+.+.|.....+.+..
T Consensus 382 ------~~~-----------~~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~ 443 (924)
T KOG0920|consen 382 ------QLR-----------LARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSL 443 (924)
T ss_pred ------ccc-----------cccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccccc
Confidence 000 0003334444 9999999999999999889999999999999999999999877777777
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHH
Q 000991 608 RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAAR 687 (1197)
Q Consensus 608 ~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~ 687 (1197)
++.+.++||.|+..||+.||..++.|.+|||+||||||+|||||||.||||+|+.|++.||+.++++++...|+|+|++.
T Consensus 444 ~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~ 523 (924)
T KOG0920|consen 444 KFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAK 523 (924)
T ss_pred ceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCeEEEeccccchhhhhh-cCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHHHHHH
Q 000991 688 QRRGRAGRVQPGECYHLYPRYVYDAFAD-YQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQI 766 (1197)
Q Consensus 688 QR~GRAGR~~~G~cy~Lys~~~~~~l~~-~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~~L~~ 766 (1197)
||+|||||+++|.||+||++..|+.+.. +++|||+|.+|+++||++|.++.+++.+||+++++||+..++..|+..|..
T Consensus 524 QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~ 603 (924)
T KOG0920|consen 524 QRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQ 603 (924)
T ss_pred HhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999777 999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHHHHHHhhcccCChhhH
Q 000991 767 IGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDH 846 (1197)
Q Consensus 767 lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~f~~~~~SDh 846 (1197)
+|||+.+++||+||++|+.||+||++|||+++|++|+|+||+++|||+|+.++||+.|.++++.++++++.|+.+..|||
T Consensus 604 igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~ 683 (924)
T KOG0920|consen 604 IGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDH 683 (924)
T ss_pred hccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997778999
Q ss_pred HHHHHHHHHHHHHhhc--ccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCC------CCCCCCCCCCCHHHHHH
Q 000991 847 LALVRAYDGWKDAERH--QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDR------NTENCNKWSHDEHLIRA 918 (1197)
Q Consensus 847 l~~l~af~~w~~~~~~--~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~------~~~~~n~~s~~~~lira 918 (1197)
||+++||+.|++.... ....+||++||||..+|+++.++|.||.+.|.++||++. ....+|.|+.|++++++
T Consensus 684 la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~ira 763 (924)
T KOG0920|consen 684 LAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRA 763 (924)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHH
Confidence 9999999999999876 467899999999999999999999999999999999875 34568889999999999
Q ss_pred HHHhccCCCcccccc---ccccceeEeecCCEEEEecCCcCCCCCCCCCCEEEEEeeeeccc-cccccCCCCChHHHHHh
Q 000991 919 VICAGLFPGLCSVVN---KEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNS-VFLRDSTGVSDSVLLLF 994 (1197)
Q Consensus 919 ~L~aGlypnva~~~~---~~~~~~~~t~~~~~v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk-~yir~~T~V~p~~LlLF 994 (1197)
+||||||||++.+.. ..+...|.|..++.|+|||+|||+....+.+||++|+|+++|++ +|+||+|+|++++++||
T Consensus 764 vl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llf 843 (924)
T KOG0920|consen 764 VLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLF 843 (924)
T ss_pred HHhccCCCceeeeecccCCcCcceeecCCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheee
Confidence 999999999998875 45566788888889999999999998888889999999999999 99999999999999999
Q ss_pred hCccc-ccccCCcEEEe--CcEEEEEechhHHHHHHHHHHHHHHHHHHHHcCCCCCC----ccchHHHHHHHHHhcc
Q 000991 995 GGNIS-RGGLDGHLKML--GGYLEFFMKPELADTYLSLKREIEELTQQKLLNPELGI----EVQNELLLAVRLLVSE 1064 (1197)
Q Consensus 995 gg~~~-~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~lr~~l~~~l~~k~~~p~~~~----~~~~~~~~ai~~ll~~ 1064 (1197)
||.+. +...+|+..++ |+|+.|.+++++|.+++.||.+||++|++++++|.... ..+.+....+..++..
T Consensus 844 gg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 920 (924)
T KOG0920|consen 844 GGGISTVRMKSGSLALLLPDGWLRFKALPKTARLLKELRRELDSLLSKKIRSPCASLPDSSGKGSESPSLIANLLVG 920 (924)
T ss_pred cCCceeecCCCCccceecCCceEEeecchhHHHHHHHHHHHHHHHHHHhccCccccccccccccccchhhhhhhhhh
Confidence 99887 55666776554 99999999999999999999999999999999999765 1223466666666654
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-127 Score=1117.20 Aligned_cols=625 Identities=39% Similarity=0.663 Sum_probs=573.7
Q ss_pred ChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHH
Q 000991 284 SPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVS 363 (1197)
Q Consensus 284 s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva 363 (1197)
......+.++|..||+++++++|+.++++|+++||.|+||||||||+|||+++..+. ..+.|.||||||++|+++|
T Consensus 37 ~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----~~g~I~~TQPRRVAavslA 112 (674)
T KOG0922|consen 37 KSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----SSGKIACTQPRRVAAVSLA 112 (674)
T ss_pred cccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----cCCcEEeecCchHHHHHHH
Confidence 344558889999999999999999999999999999999999999999999987653 3445999999999999999
Q ss_pred HHHHHHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc
Q 000991 364 ERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1197)
Q Consensus 364 ~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~ 443 (1197)
+||++|+|..+|..|||.|||++..+..|+|.|+|+|+|||.+..||.|+.|++|||||||||++.+|+|+++||.++..
T Consensus 113 ~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 113 KRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK 192 (674)
T ss_pred HHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhh
Q 000991 444 RPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKR 523 (1197)
Q Consensus 444 r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~ 523 (1197)
++++|+|+||||+|++.|++||++||++.|+||+|||+++|+..
T Consensus 193 R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~------------------------------------ 236 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKE------------------------------------ 236 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccC------------------------------------
Confidence 99999999999999999999999999999999999999999752
Q ss_pred hhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC-C
Q 000991 524 KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP-L 602 (1197)
Q Consensus 524 ~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~-~ 602 (1197)
...+.+..++ ..+..|+.++++|.||||++|.++|+.+++.|.+.. .
T Consensus 237 --p~~dYv~a~~------------------------------~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~ 284 (674)
T KOG0922|consen 237 --PTADYVDAAL------------------------------ITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKS 284 (674)
T ss_pred --CchhhHHHHH------------------------------HHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 0111222222 235677788899999999999999999999998642 1
Q ss_pred CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 603 ~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
.++.....++++||.|+.++|.+||+..+.|.||||+||||||||||||+|.||||+|+.|.+.|++.+++.+|..+|||
T Consensus 285 ~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~IS 364 (674)
T KOG0922|consen 285 LPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPIS 364 (674)
T ss_pred ccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEech
Confidence 22222237899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHhhhcccCCCCCCeEEEeccccchhhhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHH
Q 000991 683 KAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIE 762 (1197)
Q Consensus 683 kas~~QR~GRAGR~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~ 762 (1197)
++++.||+|||||.+||+|||||++..|+.|++.++|||+|++|..++|++|+||++|+..| .++|||+++++..|++
T Consensus 365 kasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F--~f~d~P~~~~l~~AL~ 442 (674)
T KOG0922|consen 365 KASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRF--PFIDPPPPEALEEALE 442 (674)
T ss_pred HHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccC--CCCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhcccccCCcccc-ccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHH-HHHHHhhccc
Q 000991 763 YLQIIGALDENENLTV-LGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDL-AESAKAQFSA 840 (1197)
Q Consensus 763 ~L~~lGaLd~~~~lT~-LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~-a~~~r~~f~~ 840 (1197)
.|..+||||++|.||. +|+.|+.+|++|.++|||+.+..+||++++++|||+||+.++|..|.+++.. ++..|.+|.
T Consensus 443 ~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~- 521 (674)
T KOG0922|consen 443 ELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFA- 521 (674)
T ss_pred HHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhc-
Confidence 9999999999999999 9999999999999999999999999999999999999999999999988877 899999998
Q ss_pred CChhhHHHHHHHHHHHHHHhhcccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHH
Q 000991 841 RDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVI 920 (1197)
Q Consensus 841 ~~~SDhl~~l~af~~w~~~~~~~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s~~~~lira~L 920 (1197)
+..+||++++++|+.|... +...+||++|||+.++|+.+.++|+||..++.+.++.. .+ ...|.+.|+.||
T Consensus 522 ~~eGDh~tlL~vy~~~~~~---~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~---~s---~~~d~~~i~k~l 592 (674)
T KOG0922|consen 522 NPEGDHLTLLNVYESWKEN---GTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPV---SS---CGGDMEKIRKCL 592 (674)
T ss_pred CcccCHHHHHHHHHHHHhc---CChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCc---cC---CCCCHHHHHHHH
Confidence 7788999999999999874 45679999999999999999999999999998888753 12 245678899999
Q ss_pred HhccCCCccccccccccceeEeecCCE-EEEecCCcCCCCCCCCCCEEEEEeeeeccccccccCCCCChHHHHHhhCcc
Q 000991 921 CAGLFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNI 998 (1197)
Q Consensus 921 ~aGlypnva~~~~~~~~~~~~t~~~~~-v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~~LlLFgg~~ 998 (1197)
|+|||.|+|+....+ . |+|+.+++ |+|||||+++... ++||||||++.|+|.|+|+||.|.+.||..++.+.
T Consensus 593 ~aGff~N~A~~~~~~--~-Yrti~~~~~v~IHPSS~l~~~~---p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~ 665 (674)
T KOG0922|consen 593 CAGFFRNVAERDYQD--G-YRTIRGGQPVYIHPSSVLFRRK---PEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHF 665 (674)
T ss_pred HHHHHHHHHHhhcCC--C-eEEccCCcEEEEechHHhhcCC---CCEEEEEEEeecchHhHhheeecCHHHHHHhCchH
Confidence 999999999875332 3 99987665 8999999999764 68999999999999999999999999999987765
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-123 Score=1062.28 Aligned_cols=622 Identities=36% Similarity=0.591 Sum_probs=570.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHH
Q 000991 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1197)
Q Consensus 288 ~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa 367 (1197)
+.+.++|+.||++..+++++..|.+|++|||+|+||||||||++||+++. +.+..+.|.||||||.+|++||+||+
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed----GY~~~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED----GYADNGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc----ccccCCeeeecCchHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999985 44566799999999999999999999
Q ss_pred HHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccc
Q 000991 368 AERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1197)
Q Consensus 368 ~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~l 447 (1197)
.|+|..+|..|||.|||++.++++|.|-|+|.|+||+....+..|..|++||+||||||++++|+++++++.++..|.++
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhh
Q 000991 448 RLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1197)
Q Consensus 448 klIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~ 527 (1197)
|+|++|||+|++.|++|||+||.+.||||+|||++.|.... .
T Consensus 502 KliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p--------------------------------------~ 543 (1042)
T KOG0924|consen 502 KLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTP--------------------------------------V 543 (1042)
T ss_pred eEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCc--------------------------------------h
Confidence 99999999999999999999999999999999999986431 1
Q ss_pred HHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC---CCC
Q 000991 528 ASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP---LLG 604 (1197)
Q Consensus 528 ~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~---~~~ 604 (1197)
.+.++.++.. ...|+....+|.||||++|.++|+..+..+...- ..+
T Consensus 544 eDYVeaavkq------------------------------~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~ 593 (1042)
T KOG0924|consen 544 EDYVEAAVKQ------------------------------AVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSA 593 (1042)
T ss_pred HHHHHHHHhh------------------------------heEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcC
Confidence 1223322221 1234445678999999999999998887776421 112
Q ss_pred CCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHh
Q 000991 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1197)
Q Consensus 605 ~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSka 684 (1197)
...++.|+|++|.||.+-|.+||+..+.|.+|+||||||||||+|||+|.||||+|+.|.+.|++..+++.|...+||+|
T Consensus 594 ~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 594 PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 22478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCCCeEEEeccccchh-hhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHHH
Q 000991 685 AARQRRGRAGRVQPGECYHLYPRYVYD-AFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEY 763 (1197)
Q Consensus 685 s~~QR~GRAGR~~~G~cy~Lys~~~~~-~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~~ 763 (1197)
++.||+|||||++||.||+|||+..|. .|.+.++|||+|++|.+++|.+|+|+++++..| .|+|||+.+.+.+|+..
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F--dFmD~Pped~~~~sly~ 751 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF--DFMDPPPEDNLLNSLYQ 751 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC--CcCCCCHHHHHHHHHHH
Confidence 999999999999999999999998885 599999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHHHHHHhhcccCCh
Q 000991 764 LQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDY 843 (1197)
Q Consensus 764 L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~f~~~~~ 843 (1197)
|..+||||..|.||++|+.|+.+|+||.++||||.++.+||.+++|+|+++||+...|+.|.++.++++.+|.+|. ...
T Consensus 752 Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~-~~~ 830 (1042)
T KOG0924|consen 752 LWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQ-VPE 830 (1042)
T ss_pred HHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhc-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred hhHHHHHHHHHHHHHHhhcccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHhc
Q 000991 844 SDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAG 923 (1197)
Q Consensus 844 SDhl~~l~af~~w~~~~~~~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s~~~~lira~L~aG 923 (1197)
||||++||+|++|...+ ....||.+|||+.++|+.+.++|.||+++|++.++.- +. +.+|++|++|||+|
T Consensus 831 sDhLTlLNVf~qw~~~~---~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l------~S-~~dwdivrKCIcs~ 900 (1042)
T KOG0924|consen 831 SDHLTLLNVFNQWRKNK---YSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPL------IS-SDDWDIVRKCICSA 900 (1042)
T ss_pred CchhhHHHHHHHHHhcC---CchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCc------cc-CchHHHHHHHHHHH
Confidence 99999999999998764 4578999999999999999999999999999999842 22 27899999999999
Q ss_pred cCCCccccccccccceeEeecCCE-EEEecCCcCCCCCCCCCCEEEEEeeeeccccccccCCCCChHHHHHhhCccc
Q 000991 924 LFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNIS 999 (1197)
Q Consensus 924 lypnva~~~~~~~~~~~~t~~~~~-v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~~LlLFgg~~~ 999 (1197)
+|-|+|++.. .+.|.+...+. ++|||+|++++. +.++||||||++.|++.||+.||.|+|.||+..||-.-
T Consensus 901 ~fhn~Arlkg---~g~YV~~~tg~~c~lHPsS~L~g~--y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y 972 (1042)
T KOG0924|consen 901 YFHNAARLKG---IGEYVNLSTGIPCHLHPSSVLHGL--YTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFY 972 (1042)
T ss_pred HHHHHHHhcc---CceEEEccCCcceeecchHhhhcC--CCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeE
Confidence 9999998742 24577776664 899999999986 45789999999999999999999999999999998654
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-121 Score=1049.07 Aligned_cols=623 Identities=36% Similarity=0.614 Sum_probs=565.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHH
Q 000991 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1197)
Q Consensus 288 ~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa 367 (1197)
..+.+.|+.||+|.++++++.+|.+++++||.|+||||||||+|||+.|..+.. .+.+|.||||||++|++||.||+
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk---~gk~IgcTQPRRVAAmSVAaRVA 331 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK---GGKKIGCTQPRRVAAMSVAARVA 331 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc---CCceEeecCcchHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999876542 23459999999999999999999
Q ss_pred HHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccc
Q 000991 368 AERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1197)
Q Consensus 368 ~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~l 447 (1197)
+|+|.++|..|||+||++++++..|.|.|+|+|||++.++.+|.|..|++|||||||||.+++|+|.++++++.+.||++
T Consensus 332 ~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 332 EEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred HHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhh
Q 000991 448 RLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1197)
Q Consensus 448 klIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~ 527 (1197)
|++++|||+|++.|+.||+++|++.+||+.|||+++|-... -
T Consensus 412 KllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P--------------------------------------E 453 (902)
T KOG0923|consen 412 KLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP--------------------------------------E 453 (902)
T ss_pred eEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCC--------------------------------------c
Confidence 99999999999999999999999999999999999996420 0
Q ss_pred HHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC-CCCC-
Q 000991 528 ASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP-LLGD- 605 (1197)
Q Consensus 528 ~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~-~~~~- 605 (1197)
.+.++.++. .+..|+...+.|.||||++|.++|+.+.+.|.... .+|.
T Consensus 454 AdYldAai~------------------------------tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGsk 503 (902)
T KOG0923|consen 454 ADYLDAAIV------------------------------TVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSK 503 (902)
T ss_pred hhHHHHHHh------------------------------hheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccc
Confidence 112222221 24455666778999999999999999988887531 1232
Q ss_pred CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhh
Q 000991 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1197)
Q Consensus 606 ~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas 685 (1197)
...+.|+|+|++||.+.|.+||++.|+|.||||+||||||||||||+|.||||.|+.|+++|++.+++.+|..++||||+
T Consensus 504 i~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAs 583 (902)
T KOG0923|consen 504 IRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKAS 583 (902)
T ss_pred cceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCCeEEEeccccchhh-hhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHHHH
Q 000991 686 ARQRRGRAGRVQPGECYHLYPRYVYDA-FADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYL 764 (1197)
Q Consensus 686 ~~QR~GRAGR~~~G~cy~Lys~~~~~~-l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~~L 764 (1197)
+.||+|||||++||+||+||+...|.. +.+.++|||+|++|.+++|.+|+||+.++..| .|+|||+.+++..||+.|
T Consensus 584 A~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~F--dFmDpPp~etL~~aLE~L 661 (902)
T KOG0923|consen 584 ANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHF--DFLDPPPTETLLKALEQL 661 (902)
T ss_pred hhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhccc--ccCCCCChHHHHHHHHHH
Confidence 999999999999999999999999975 88888999999999999999999999999999 999999999999999999
Q ss_pred HHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCC-CCcccCcchHHHHHHHHhhcccCCh
Q 000991 765 QIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVR-DPFLMPFDKKDLAESAKAQFSARDY 843 (1197)
Q Consensus 765 ~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~-~pF~~p~~~~~~a~~~r~~f~~~~~ 843 (1197)
+.+|||+..|+||.+|+.|+++|+||.++|||+.+....|.+++++|||+||+. ++|+.|.++.-.++.+++.|. ...
T Consensus 662 yaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~-~~~ 740 (902)
T KOG0923|consen 662 YALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFE-EPV 740 (902)
T ss_pred HHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccC-CCC
Confidence 999999999999999999999999999999999999999999999999999985 789999999989999999998 568
Q ss_pred hhHHHHHHHHHHHHHHhhcccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHhc
Q 000991 844 SDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAG 923 (1197)
Q Consensus 844 SDhl~~l~af~~w~~~~~~~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s~~~~lira~L~aG 923 (1197)
|||++++++|+.|...+ .+.+||.+||+++.+|..+.++|.||..+|...+....+ + ..+...||.++.+|
T Consensus 741 gDhi~~L~vyn~w~es~---~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s----~--~~~~~~irk~i~aG 811 (902)
T KOG0923|consen 741 GDHIVLLNVYNQWKESK---YSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSS----N--QNDLDKIRKAITAG 811 (902)
T ss_pred cchhhhhHHHHHHhhcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccC----C--hHHHHHHHHHHhcc
Confidence 99999999999998764 457999999999999999999999999999987753211 1 12456799999999
Q ss_pred cCCCccccccccccceeEeecCCE-EEEecCCcCCCCCCCCCCEEEEEeeeeccccccccCCCCChHHHHHhhCccc
Q 000991 924 LFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNIS 999 (1197)
Q Consensus 924 lypnva~~~~~~~~~~~~t~~~~~-v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~~LlLFgg~~~ 999 (1197)
||||+|++. +..+|+|....+ |++||.|+++... |.||||||+|.|++.|+|.++.+.+.||+-.+.+.-
T Consensus 812 ff~h~a~l~---~~g~y~tvk~~~tv~~hp~S~l~~~~---P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyy 882 (902)
T KOG0923|consen 812 FFYHTAKLS---KGGHYRTVKHPQTVSIHPNSGLFEQL---PRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYY 882 (902)
T ss_pred ccccceecc---CCCcceeeccCcceeecCcccccccC---CceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhh
Confidence 999999875 345799887665 8999999998742 389999999999999999999999999998877654
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-116 Score=976.03 Aligned_cols=623 Identities=36% Similarity=0.601 Sum_probs=567.1
Q ss_pred cChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHH
Q 000991 283 ESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362 (1197)
Q Consensus 283 ~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qv 362 (1197)
.++.|.++++.|..||+|.+++++++.+.+||.+|++|+||||||||+|||+++...... ..|.||||||..|+++
T Consensus 32 ~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQprrvaamsv 107 (699)
T KOG0925|consen 32 YSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQPRRVAAMSV 107 (699)
T ss_pred CcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCchHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999887654 4699999999999999
Q ss_pred HHHHHHHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc
Q 000991 363 SERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1197)
Q Consensus 363 a~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~ 442 (1197)
|.||++|++..+|..|||.||+|++.+++|-+.|||+|+|++..++++.+..+++||+||||||++.+|.|+++|++++.
T Consensus 108 a~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~ 187 (699)
T KOG0925|consen 108 AQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVR 187 (699)
T ss_pred HHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHh
Q 000991 443 RRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1197)
Q Consensus 443 ~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~ 522 (1197)
.+|++|+|+||||++++.|..||+++|++.+|| +|||+++|..+..
T Consensus 188 ~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~e--------------------------------- 233 (699)
T KOG0925|consen 188 NRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPE--------------------------------- 233 (699)
T ss_pred hCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCC---------------------------------
Confidence 999999999999999999999999999999999 9999999975410
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcC--
Q 000991 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH-- 600 (1197)
Q Consensus 523 ~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~-- 600 (1197)
.+.++.++ ..+..|+..+.+|.||||++|.++|+.+++.+...
T Consensus 234 -----rDylEaai------------------------------rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~ 278 (699)
T KOG0925|consen 234 -----RDYLEAAI------------------------------RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVD 278 (699)
T ss_pred -----hhHHHHHH------------------------------HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHH
Confidence 01222222 24667777788999999999999999999988742
Q ss_pred CCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC-----ceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCC
Q 000991 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-----VRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPC 675 (1197)
Q Consensus 601 ~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G-----~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~ 675 (1197)
.+..+.....+.|+| +.+|+.+|+..+.. .|||||+||+||++++|++|+||||.|+.|++.|+|.-...+
T Consensus 279 ~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRves 354 (699)
T KOG0925|consen 279 NLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVES 354 (699)
T ss_pred hhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeee
Confidence 223344567899999 77888999988743 489999999999999999999999999999999999999999
Q ss_pred ccccccCHhhHHhhhcccCCCCCCeEEEeccccchhh-hhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCCh
Q 000991 676 LLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDA-FADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEP 754 (1197)
Q Consensus 676 l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~~-l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~ 754 (1197)
++..+|||+++.||+|||||.+||+||+||++..|+. |.+.+.|||+|.+|.+++|++|.+|++++..| .++|||.+
T Consensus 355 llv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf--dfmDpPAP 432 (699)
T KOG0925|consen 355 LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF--DFMDPPAP 432 (699)
T ss_pred eeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC--cCCCCCCh
Confidence 9999999999999999999999999999999999974 99999999999999999999999999999999 99999999
Q ss_pred hhHHHHHHHHHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCc-chHHHHHH
Q 000991 755 LSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPF-DKKDLAES 833 (1197)
Q Consensus 755 ~~v~~Al~~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~-~~~~~a~~ 833 (1197)
+++.+|++.|..++|||++|+||++|..||.+|+||+++||||.++.|+|.+++|+|+|+||+.+.|+.|. +.++.|+.
T Consensus 433 EtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAde 512 (699)
T KOG0925|consen 433 ETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADE 512 (699)
T ss_pred HHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 78899999
Q ss_pred HHhhcccCChhhHHHHHHHHHHHHHHhhcccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCH
Q 000991 834 AKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDE 913 (1197)
Q Consensus 834 ~r~~f~~~~~SDhl~~l~af~~w~~~~~~~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s~~~ 913 (1197)
+|+.|+ +..|||++++|+|.+|++.. ...+||++||||+.+|.++.++|.||.++|.+.++.-..... +. .++.
T Consensus 513 ak~~fa-H~dGDHlTLlnVYhAfkq~~---~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F-~S-~~y~ 586 (699)
T KOG0925|consen 513 AKETFA-HIDGDHLTLLNVYHAFKQNN---EDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDF-GS-RDYY 586 (699)
T ss_pred HHHHhc-cCCcchHHHHHHHHHHHhcC---CChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCC-CC-hhHH
Confidence 999999 78899999999999998764 356899999999999999999999999999999985432221 11 1233
Q ss_pred HHHHHHHHhccCCCccccccccccceeEeecCCE-EEEecCCcCCCCCCCCCCEEEEEeeeeccccccccCCCCChHHHH
Q 000991 914 HLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLL 992 (1197)
Q Consensus 914 ~lira~L~aGlypnva~~~~~~~~~~~~t~~~~~-v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~~Ll 992 (1197)
.-||++|++|||++||+... ..+|.|+.+++ |.+||++++.. +++|++|||.+.|++.|||.||.|.|.||+
T Consensus 587 ~nirKALvsgyFmqVA~~~~---~~~Ylt~kdnqvvqLhps~~l~~----~PeWVlyneFvlt~~N~ir~vt~I~pewlv 659 (699)
T KOG0925|consen 587 VNIRKALVSGYFMQVAHLER---GGHYLTVKDNQVVQLHPSTCLDH----KPEWVLYNEFVLTTKNFIRTVTDIRPEWLV 659 (699)
T ss_pred HHHHHHHHHHHHHHHHhhcc---CCceEEEecCceEEeccccccCC----CCCeEEEeeEEeeccceeeeecccCHHHHH
Confidence 45899999999999997653 33899999998 68999999863 579999999999999999999999999999
Q ss_pred HhhCc
Q 000991 993 LFGGN 997 (1197)
Q Consensus 993 LFgg~ 997 (1197)
-.+..
T Consensus 660 ~laP~ 664 (699)
T KOG0925|consen 660 ELAPQ 664 (699)
T ss_pred Hhchh
Confidence 66553
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9e-111 Score=1064.18 Aligned_cols=626 Identities=32% Similarity=0.525 Sum_probs=559.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
..+.++.+||++.++++|+++|.+|+++||+|+||||||||+|+++++. +.+..+.|+||||||++|.++|+||++
T Consensus 65 p~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~----g~g~~g~I~~TQPRRlAArsLA~RVA~ 140 (1294)
T PRK11131 65 PEITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL----GRGVKGLIGHTQPRRLAARTVANRIAE 140 (1294)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc----CCCCCCceeeCCCcHHHHHHHHHHHHH
Confidence 3466788999999999999999999999999999999999999999873 455567899999999999999999999
Q ss_pred HhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 369 ERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 369 e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
+++..+|..|||++++++..+.+++|+|||||+|++.+..++.|+++++|||||||||++++||++++++.++..+|++|
T Consensus 141 El~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlK 220 (1294)
T PRK11131 141 ELETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLK 220 (1294)
T ss_pred HHhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCce
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhH
Q 000991 449 LILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1197)
Q Consensus 449 lIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 528 (1197)
+|+||||++.+.|++||+++|++.++|++|||+.+|..... +. .. . ..
T Consensus 221 vILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~-------------~~--~~-------------~----~~ 268 (1294)
T PRK11131 221 VIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVE-------------EA--DD-------------T----ER 268 (1294)
T ss_pred EEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeeccc-------------cc--ch-------------h----hH
Confidence 99999999999999999999999999999999998864210 00 00 0 00
Q ss_pred HHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCc
Q 000991 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR 608 (1197)
Q Consensus 529 ~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~ 608 (1197)
+.+.. +...+..++ ....|+|||||||..+|+.+++.|..... ..
T Consensus 269 d~l~~------------------------------ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~----~~ 313 (1294)
T PRK11131 269 DQLQA------------------------------IFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNL----RH 313 (1294)
T ss_pred HHHHH------------------------------HHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCC----Cc
Confidence 00110 111222333 34578999999999999999999987521 23
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHh
Q 000991 609 VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQ 688 (1197)
Q Consensus 609 ~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~Q 688 (1197)
..|.++||+|++++|..+|+. .|.++|||||||||+|||||+|+||||+|+.|.+.||+.++++.+...|||+++|.|
T Consensus 314 ~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~Q 391 (1294)
T PRK11131 314 TEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQ 391 (1294)
T ss_pred ceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhh
Confidence 568999999999999999986 588999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCeEEEeccccchhhhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHHHHHHhc
Q 000991 689 RRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIG 768 (1197)
Q Consensus 689 R~GRAGR~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~~L~~lG 768 (1197)
|+|||||.++|.||+||++++|+.+++++.|||+|++|.++||+++++|++++..| .|++||+.++|..|++.|..+|
T Consensus 392 RaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F--~fldpP~~~~i~~al~~L~~Lg 469 (1294)
T PRK11131 392 RKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAF--PFVEAPDKRNIQDGVRLLEELG 469 (1294)
T ss_pred hccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCccee--eCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred ccccC-----CccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHHHHHHhhcccCCh
Q 000991 769 ALDEN-----ENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDY 843 (1197)
Q Consensus 769 aLd~~-----~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~f~~~~~ 843 (1197)
|||.+ ++||++|+.|++||+||++||||+.|+.|+|++++++|||+||+++||..|.++++.++.++++|+ +..
T Consensus 470 Ald~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~-~~~ 548 (1294)
T PRK11131 470 AITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFA-DKE 548 (1294)
T ss_pred CCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhC-CCC
Confidence 99864 579999999999999999999999999999999999999999999999999999999999999998 788
Q ss_pred hhHHHHHHHHHHHHHHhhc---ccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHH
Q 000991 844 SDHLALVRAYDGWKDAERH---QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVI 920 (1197)
Q Consensus 844 SDhl~~l~af~~w~~~~~~---~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s~~~~lira~L 920 (1197)
|||++++|+|+.|.+.... +..++||++||||+.+|+++.++|.||..++++.|+.. |....+.+.|++||
T Consensus 549 sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~------~~~~~~~~~i~~al 622 (1294)
T PRK11131 549 SDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPV------NSEPAEYREIHTAL 622 (1294)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCC------CCCcccHHHHHHHH
Confidence 9999999999999865331 22358999999999999999999999999999999853 22345788999999
Q ss_pred HhccCCCccccccccccceeEeecCCEEEEecCCcCCCCCCCCCCEEEEEeeeeccccccccCCCCChHHHHHhhCcccc
Q 000991 921 CAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISR 1000 (1197)
Q Consensus 921 ~aGlypnva~~~~~~~~~~~~t~~~~~v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~~LlLFgg~~~~ 1000 (1197)
|+|||+|||+.... ...|.+..+..|+|||+|++++. +++||||+|++.|++.|+|+||.|+|.||.-+++++..
T Consensus 623 l~G~~~nva~~~~~--~~~y~~~~~~~~~ihP~S~L~~~---~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~ 697 (1294)
T PRK11131 623 LTGLLSHIGMKDAE--KQEYTGARNARFSIFPGSGLFKK---PPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLIK 697 (1294)
T ss_pred HhhcHHHHeeccCC--CCeEEccCCcEEEEcCCccccCC---CCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhcc
Confidence 99999999976432 23588877888999999999864 46899999999999999999999999999999998854
Q ss_pred c
Q 000991 1001 G 1001 (1197)
Q Consensus 1001 ~ 1001 (1197)
.
T Consensus 698 ~ 698 (1294)
T PRK11131 698 R 698 (1294)
T ss_pred c
Confidence 3
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-106 Score=1030.50 Aligned_cols=624 Identities=33% Similarity=0.554 Sum_probs=558.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
..+.++..||++.++++|+++|.+|+++||+|+||||||||+|+++++. +.+..++|+||||||++|.++|+||++
T Consensus 58 ~~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~----~~~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 58 PEIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL----GRGSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc----CCCCCceEecCCccHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999873 445567999999999999999999999
Q ss_pred HhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 369 ERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 369 e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
++|+.+|..|||++|+++..+.+|+|+|||+|+|++++..++.|.++++|||||||||++++|+++.+++.++..++++|
T Consensus 134 elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLK 213 (1283)
T TIGR01967 134 ELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLK 213 (1283)
T ss_pred HhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhH
Q 000991 449 LILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1197)
Q Consensus 449 lIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 528 (1197)
+|+||||++.+.|++||+++|++.++|+.|||+.+|.... . .. .+. . .
T Consensus 214 lIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~---------~----~~--~~~--------------~---~ 261 (1283)
T TIGR01967 214 IIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLV---------E----EQ--EDD--------------D---L 261 (1283)
T ss_pred EEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEeccc---------c----cc--cch--------------h---h
Confidence 9999999999999999999999999999999999885310 0 00 000 0 0
Q ss_pred HHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCc
Q 000991 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR 608 (1197)
Q Consensus 529 ~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~ 608 (1197)
..+ +.+...+..++.. ..|+||||+||..+|+.+++.|.... ...
T Consensus 262 ~~~------------------------------~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~----~~~ 306 (1283)
T TIGR01967 262 DQL------------------------------EAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRN----LRH 306 (1283)
T ss_pred hHH------------------------------HHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcC----CCC
Confidence 000 0112233344433 56899999999999999999998652 124
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHh
Q 000991 609 VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQ 688 (1197)
Q Consensus 609 ~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~Q 688 (1197)
+.|.++||+|+.++|.++|+.+ +.++|||||||||+|||||+|+||||+|+++.+.||+.++++.+...|||+++|.|
T Consensus 307 ~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~Q 384 (1283)
T TIGR01967 307 TEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQ 384 (1283)
T ss_pred cEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHH
Confidence 6799999999999999999875 35899999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCeEEEeccccchhhhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHHHHHHhc
Q 000991 689 RRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIG 768 (1197)
Q Consensus 689 R~GRAGR~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~~L~~lG 768 (1197)
|+|||||.++|.||+||+++.|+.+++++.|||+|++|.+++|+++.+|++++.+| .|++||+..++..|++.|..+|
T Consensus 385 RaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f--~fldpP~~~~i~~A~~~L~~LG 462 (1283)
T TIGR01967 385 RKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAF--PFIEAPDPRAIRDGFRLLEELG 462 (1283)
T ss_pred HhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccc--cCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccccCC---ccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHHHHHHhhcccCChhh
Q 000991 769 ALDENE---NLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSD 845 (1197)
Q Consensus 769 aLd~~~---~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~f~~~~~SD 845 (1197)
|||.++ +||++|+.|+.||+||++||||+.|+.++|++++++|||+||+++||..|.++++.++.++++|. +..||
T Consensus 463 Ald~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~-~~~sD 541 (1283)
T TIGR01967 463 ALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFK-DPRSD 541 (1283)
T ss_pred CCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhc-CCCCC
Confidence 999998 79999999999999999999999999999999999999999999999999999999999999998 67899
Q ss_pred HHHHHHHHHHHHHHhhc---ccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHh
Q 000991 846 HLALVRAYDGWKDAERH---QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICA 922 (1197)
Q Consensus 846 hl~~l~af~~w~~~~~~---~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s~~~~lira~L~a 922 (1197)
|++++|+|+.|.+.... +...+||++||||+.+|+++.++++||..++++.|+.. |.+..+...++.+||+
T Consensus 542 ~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~------~~~~~~~~~i~~~l~~ 615 (1283)
T TIGR01967 542 FLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKL------NEEPADYDAIHKALLS 615 (1283)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCc------CCCCccHHHHHHHHHH
Confidence 99999999999865322 22368999999999999999999999999999998742 2223456679999999
Q ss_pred ccCCCccccccccccceeEeecCCEEEEecCCcCCCCCCCCCCEEEEEeeeeccccccccCCCCChHHHHHhhCcccc
Q 000991 923 GLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISR 1000 (1197)
Q Consensus 923 Glypnva~~~~~~~~~~~~t~~~~~v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~~LlLFgg~~~~ 1000 (1197)
|||+|||+... ...|.+..+..+.|||+|++++. +++||||+|++.|++.|||++|.|+|.||..+++++..
T Consensus 616 g~~~~iA~~~~---~~~y~~~~g~~~~ihP~S~L~~~---~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~~ 687 (1283)
T TIGR01967 616 GLLSQIGMKDE---KHEYDGARGRKFHIFPGSPLFKK---PPKWVMAAELVETSKLYARLVAKIEPEWVEPVAGHLIK 687 (1283)
T ss_pred hhHHHHheeCC---CCcEEecCCcEEEECCCccccCC---CCCEEEEeeecccchheEeeeccCCHHHHHHHhHHHhE
Confidence 99999997542 23688888888999999999864 46899999999999999999999999999999987644
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-103 Score=969.99 Aligned_cols=634 Identities=39% Similarity=0.582 Sum_probs=550.4
Q ss_pred hcChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHH
Q 000991 282 QESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMA 361 (1197)
Q Consensus 282 ~~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~q 361 (1197)
..+..+..+..+|..||++..+.+|++++.+|+++||+||||||||||+|+++++..+ +....|+||||||++|.+
T Consensus 34 ~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArs 109 (845)
T COG1643 34 SRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARS 109 (845)
T ss_pred hcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHH
Confidence 3456677889999999999999999999999999999999999999999999999765 456799999999999999
Q ss_pred HHHHHHHHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 362 VSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 362 va~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
+|+||++++|+++|+.|||.+|+++..+.+|+|.|+|+|+|+++++.|+.|+.|++|||||+|||++++|+++++++.++
T Consensus 110 vA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~ 189 (845)
T COG1643 110 VAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLL 189 (845)
T ss_pred HHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCc-cceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHH
Q 000991 442 PRRP-ELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1197)
Q Consensus 442 ~~r~-~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~ 520 (1197)
..++ ++|+|+||||+|++.|++||+++|++.++|++|||+++|.+... .++
T Consensus 190 ~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~-------------~d~--------------- 241 (845)
T COG1643 190 ARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE-------------ADY--------------- 241 (845)
T ss_pred hhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCC-------------cch---------------
Confidence 7666 79999999999999999999999999999999999999975310 000
Q ss_pred HhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcC
Q 000991 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1197)
Q Consensus 521 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~ 600 (1197)
.+++++. . ...++.....|.||||+||.++|+.+++.|.+.
T Consensus 242 ---------~l~~ai~-----------------------------~-~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~ 282 (845)
T COG1643 242 ---------ILLDAIV-----------------------------A-AVDIHLREGSGSILVFLPGQREIERTAEWLEKA 282 (845)
T ss_pred ---------hHHHHHH-----------------------------H-HHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc
Confidence 0111111 1 222334456899999999999999999999982
Q ss_pred CCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccc
Q 000991 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSW 680 (1197)
Q Consensus 601 ~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~ 680 (1197)
.++ ..+.|+|+||.|+.++|.++|+..+.|++|||+||||||||||||+|+||||+|+.|++.||+.+++..|.++|
T Consensus 283 -~l~--~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ 359 (845)
T COG1643 283 -ELG--DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEP 359 (845)
T ss_pred -ccc--CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEE
Confidence 122 36889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHhhHHhhhcccCCCCCCeEEEeccccchhhhhhcCCccccccchhhhhHHhhhcCCC-CHHHHHhhhcCCCChhhHHH
Q 000991 681 ISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLG-SISEFLSRALQPPEPLSVKN 759 (1197)
Q Consensus 681 iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~-~i~~fL~~~ldpP~~~~v~~ 759 (1197)
||+|++.||+|||||++||+||+||+++.|+.|+.++.|||+|++|.+++|+++.+|++ ++..| .|+|||+..++..
T Consensus 360 ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f--~fld~P~~~~i~~ 437 (845)
T COG1643 360 ISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPPPEAAIQA 437 (845)
T ss_pred echhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccC--ccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999996 99999 9999999999999
Q ss_pred HHHHHHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCC---CcccCcchHH---HHHH
Q 000991 760 AIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRD---PFLMPFDKKD---LAES 833 (1197)
Q Consensus 760 Al~~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~---pF~~p~~~~~---~a~~ 833 (1197)
|++.|..+||||.+|.||++|+.|+.||+||++|+||+.+..++|++++++|||+||+++ .|..+.+.+. ..+.
T Consensus 438 A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~ 517 (845)
T COG1643 438 ALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDL 517 (845)
T ss_pred HHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 6888776655 3333
Q ss_pred HH-hhcc--cCChhhHHHHHHHHHHHHHHhhc---ccchhhHhhhccchhhHHHHHHHHHHHHHHHHH-cCCCCCCCC--
Q 000991 834 AK-AQFS--ARDYSDHLALVRAYDGWKDAERH---QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKD-AGLVDRNTE-- 904 (1197)
Q Consensus 834 ~r-~~f~--~~~~SDhl~~l~af~~w~~~~~~---~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~-~gl~~~~~~-- 904 (1197)
++ ..+. ....+||++++++|..|...+.. .....||+.++++.++|..+..++.+++..... .|.+.....
T Consensus 518 ~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 597 (845)
T COG1643 518 LKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEID 597 (845)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccC
Confidence 33 2232 23679999999999999977631 124689999999999999999999998887776 453321100
Q ss_pred -----------CCCCCCCCHHHHHHHHHhccCCCccccccccccceeEeecC-CEEEEecCCcCCCCCCCCCCEEEEEee
Q 000991 905 -----------NCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMED-GQVLLYSNSVNAGVPKIPYPWLVFNEK 972 (1197)
Q Consensus 905 -----------~~n~~s~~~~lira~L~aGlypnva~~~~~~~~~~~~t~~~-~~v~iHPsSv~~~~~~~~~~~lvy~E~ 972 (1197)
.+-.+. .|+.++.++++|++.|++.+.... ..|.+..+ ..|.+||+|+. .....++|++|++.
T Consensus 598 ~~~~~~~~~~~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~v~--~~~~~~~~~~~~~~ 672 (845)
T COG1643 598 EDEWAAQHLPEHCYSEP-IWDDIRGALAAGRKLNIAQLQLDG--RPYVTLSDNTPVFAHPSSVR--LGLVLLEWIKYAEF 672 (845)
T ss_pred cchhhhhhhhhhhccch-hHHHHhhhhhhheecceeeeeccc--cccccCCCCceeEecchhHh--hcccCcchHHHHHH
Confidence 011112 468899999999999999875433 24667665 56999999972 22335689999999
Q ss_pred eeccccccc-----------cCCCCChHHHHHhhC
Q 000991 973 IKVNSVFLR-----------DSTGVSDSVLLLFGG 996 (1197)
Q Consensus 973 v~tsk~yir-----------~~T~V~p~~LlLFgg 996 (1197)
+++++.|++ .++.+.+.||.-+..
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 673 LRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred HHHHHHHHhhcccccCcccchHhhhHHHhhhhhcc
Confidence 999999999 366777777764443
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-99 Score=876.27 Aligned_cols=631 Identities=35% Similarity=0.577 Sum_probs=541.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC-CceEEEecchHHHHHHHHHHH
Q 000991 287 GQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSER 365 (1197)
Q Consensus 287 ~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g-~~~~IivtqPrR~LA~qva~r 365 (1197)
-.++.+.|..|||....++|+++|..|.+|||||+||||||||+|||++|........ ..+.|-+|||||.+|+.+|+|
T Consensus 245 ~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkR 324 (1172)
T KOG0926|consen 245 PAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKR 324 (1172)
T ss_pred cHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHH
Confidence 4588999999999999999999999999999999999999999999999976643322 245899999999999999999
Q ss_pred HHHHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC-
Q 000991 366 VAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR- 444 (1197)
Q Consensus 366 Va~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r- 444 (1197)
|+.|+|. +|..|||+||+++..+++|.|.|||+|+||+.+.+|..|..|+.|||||||||++++|+|.++|.++.+.|
T Consensus 325 Va~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 325 VAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred HHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 9999998 89999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred ---------ccceEEEecccCCHHHHHh---hhC-CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhH
Q 000991 445 ---------PELRLILMSATLNAELFSS---YFG-GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSW 511 (1197)
Q Consensus 445 ---------~~lklIlmSATl~~~~f~~---yf~-~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~ 511 (1197)
..+|+|+||||+..++|.+ .|. ..|++.++.|.|||.++|-.. .-++|
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~kr-------------T~~DY------ 464 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKR-------------TPDDY------ 464 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccC-------------CCchH------
Confidence 2689999999998888873 555 578999999999999998532 00111
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHH
Q 000991 512 KMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDIN 591 (1197)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~ 591 (1197)
+.+++ .-.+.|+++.+.|.||||+.|..++.
T Consensus 465 -------------------i~eAf------------------------------rKtc~IH~kLP~G~ILVFvTGQqEV~ 495 (1172)
T KOG0926|consen 465 -------------------IAEAF------------------------------RKTCKIHKKLPPGGILVFVTGQQEVD 495 (1172)
T ss_pred -------------------HHHHH------------------------------HHHHHHhhcCCCCcEEEEEeChHHHH
Confidence 12222 12567888899999999999999999
Q ss_pred HHHHHHHcCCC--CC-----------------------------------------------------------------
Q 000991 592 SLKDQLQAHPL--LG----------------------------------------------------------------- 604 (1197)
Q Consensus 592 ~l~~~L~~~~~--~~----------------------------------------------------------------- 604 (1197)
.+++.|++... ++
T Consensus 496 qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~ 575 (1172)
T KOG0926|consen 496 QLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADEN 575 (1172)
T ss_pred HHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcccccc
Confidence 99998875310 00
Q ss_pred -------------------------CCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeC
Q 000991 605 -------------------------DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDC 659 (1197)
Q Consensus 605 -------------------------~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~ 659 (1197)
.+..+.|+||+|-|+.++|.+||+..+.|.|-+|||||+||||+|||+|.|||||
T Consensus 576 ~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~ 655 (1172)
T KOG0926|consen 576 GSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDC 655 (1172)
T ss_pred ccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEec
Confidence 0013469999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchh-hhhhcCCccccccchhhhhHHhhhcCC
Q 000991 660 GKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD-AFADYQLPELLRTPLQSLCLQIKSLQL 738 (1197)
Q Consensus 660 G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~-~l~~~~~PEIlr~~L~~l~L~lk~l~~ 738 (1197)
|+.|+..||..++++++...|||+|++-||+|||||.+||+|||||+...|+ .++++..|||++.|.++++|++|+|++
T Consensus 656 Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI 735 (1172)
T KOG0926|consen 656 GRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNI 735 (1172)
T ss_pred cchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999998 699999999999999999999999999
Q ss_pred CCHHHHHhhhcCCCChhhHHHHHHHHHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCC
Q 000991 739 GSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVR 818 (1197)
Q Consensus 739 ~~i~~fL~~~ldpP~~~~v~~Al~~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~ 818 (1197)
..+..| .|+.||+..+++.|...|..+||||.+|.||+||+.||.+|+.|+.||||+.+...+|+.-++.++++||+.
T Consensus 736 ~kVvnF--PFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~ 813 (1172)
T KOG0926|consen 736 DKVVNF--PFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVY 813 (1172)
T ss_pred cceecC--CCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence 999999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCc-------------chH-------------------HHHHHHHhhcccCChhhHHHHHHHHHHHHHHhhcccch
Q 000991 819 DPFLMPF-------------DKK-------------------DLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGY 866 (1197)
Q Consensus 819 ~pF~~p~-------------~~~-------------------~~a~~~r~~f~~~~~SDhl~~l~af~~w~~~~~~~~~~ 866 (1197)
+||+.-. +++ .....++.+|. .-.||-|.++.|...+..+.. ..
T Consensus 814 e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~-~l~sd~l~Ll~Av~a~ey~~~---~~ 889 (1172)
T KOG0926|consen 814 EVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS-NLDSDALVLLSAVSAAEYAEN---GM 889 (1172)
T ss_pred chhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHhhhh---cc
Confidence 9886421 111 11223556666 445999999999988876643 34
Q ss_pred hhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCC---CCCCCC-CCCCCHHHHHHHHHhccCCCccccccccccceeEe
Q 000991 867 EYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDR---NTENCN-KWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKT 942 (1197)
Q Consensus 867 ~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~---~~~~~n-~~s~~~~lira~L~aGlypnva~~~~~~~~~~~~t 942 (1197)
.||..|+|..++|.++.++|+||..++...+.-+. ...... .......+++.+|||||-..||+-+.. ..|.+
T Consensus 890 rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~---~~y~~ 966 (1172)
T KOG0926|consen 890 RFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDA---TEYDA 966 (1172)
T ss_pred hhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccc---cccch
Confidence 69999999999999999999999999884332110 000111 112345789999999999999974322 12432
Q ss_pred -ecCCEEEEecCCcCCCCCCCCCCEEEEEeeeecccccccc-CCCCChHHHHHhhCcc
Q 000991 943 -MEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRD-STGVSDSVLLLFGGNI 998 (1197)
Q Consensus 943 -~~~~~v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk~yir~-~T~V~p~~LlLFgg~~ 998 (1197)
.-.+.|+|||+||++.. .++||+|.|++.|+..||.+ +|.|.|.||+...+.+
T Consensus 967 ~~i~~~~fl~~~svl~~~---ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~sl 1021 (1172)
T KOG0926|consen 967 AKIQEPVFLHRWSVLINS---APELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSL 1021 (1172)
T ss_pred hhhcCceeeeehhhhhcc---CccceehhhhhhcCCcccccceEEEchHHHHhhhhhh
Confidence 33678999999999865 36899999999999887766 9999999999977754
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=9.4e-95 Score=847.25 Aligned_cols=781 Identities=37% Similarity=0.614 Sum_probs=672.0
Q ss_pred HhcChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHH
Q 000991 281 WQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM 360 (1197)
Q Consensus 281 ~~~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~ 360 (1197)
.+..+.+..++++|.+||+..++++|++++..|++++|-++||||||||+.|+|||.+++++.+....++++||||+.|+
T Consensus 361 ~~~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisai 440 (1282)
T KOG0921|consen 361 FKRDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAI 440 (1282)
T ss_pred hhcccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchH
Confidence 34577888999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHhCCcccceeeeEeeeccccCC-CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHH
Q 000991 361 AVSERVAAERGEKLGESVGYKVRLEGMKGR-DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKE 439 (1197)
Q Consensus 361 qva~rVa~e~g~~lg~~VGy~ir~e~~~~~-~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ 439 (1197)
++++||+.++++.+|.+|||++|+++..+. ...|.+||-|.+++++.+. +..++|+|+||+|||+.++||++.+++.
T Consensus 441 siaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~ 518 (1282)
T KOG0921|consen 441 SLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLRE 518 (1282)
T ss_pred HHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHh
Confidence 999999999999999999999999998764 4689999999999988754 8899999999999999999999999999
Q ss_pred HcccCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHH
Q 000991 440 LLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1197)
Q Consensus 440 ll~~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~ 519 (1197)
+....+++++++||||+|.+.|..||+.+|...+.|++|||..+|+++++..+.+......+...+..+... +.
T Consensus 519 m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~----~~-- 592 (1282)
T KOG0921|consen 519 MISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEE----DE-- 592 (1282)
T ss_pred hhccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhccccc----Cc--
Confidence 999999999999999999999999999999999999999999999999998887665543322211110000 00
Q ss_pred HHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHc
Q 000991 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1197)
Q Consensus 520 ~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~ 599 (1197)
...++.+ .........|...+....+......+.+.+++.++.+|....-.|.||||+|+|..|..|...|..
T Consensus 593 ~~ddK~~-------n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~ 665 (1282)
T KOG0921|consen 593 EVDDKGR-------NMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLE 665 (1282)
T ss_pred hhhhccc-------ccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhh
Confidence 0000000 000011112223333344445566778899999999999888899999999999999999999999
Q ss_pred CCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccc
Q 000991 600 HPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPS 679 (1197)
Q Consensus 600 ~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~ 679 (1197)
+..+++...+.++++|+.++..+|++||+..+.|+.|+|++|||++++|||.|+++|||.++.+++.|-..+++..+.++
T Consensus 666 ~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atv 745 (1282)
T KOG0921|consen 666 HQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATV 745 (1282)
T ss_pred hhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeee
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHhhHHhhhcccCCCCCCeEEEeccccchhhhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHH
Q 000991 680 WISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKN 759 (1197)
Q Consensus 680 ~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~ 759 (1197)
|.|+-+..||.||+||+++|.||++.++..|+.+.++..|||.|+++.++.|.+|.+.+++|..||.++++||+.++|..
T Consensus 746 w~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e 825 (1282)
T KOG0921|consen 746 WASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIE 825 (1282)
T ss_pred cccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHHHHHHhhcc
Q 000991 760 AIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFS 839 (1197)
Q Consensus 760 Al~~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~f~ 839 (1197)
+-..|+.++++|.++.+|+||+.++++|++|.+|||++.|..++|.+-+..+|+.+++..||+.-.-........++.|+
T Consensus 826 ~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~ 905 (1282)
T KOG0921|consen 826 AEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFA 905 (1282)
T ss_pred chHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999988753322233334556777
Q ss_pred cCChhhHHHHHHHHHHHHHHhhcc--cchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCCCCCCH
Q 000991 840 ARDYSDHLALVRAYDGWKDAERHQ--SGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTE----NCNKWSHDE 913 (1197)
Q Consensus 840 ~~~~SDhl~~l~af~~w~~~~~~~--~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~----~~n~~s~~~ 913 (1197)
++.+|||.+.+.+-+.|..+...+ .+.+||..+.++..+|.+...+|+|+.++|+..+|...... ..|....+.
T Consensus 906 g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l 985 (1282)
T KOG0921|consen 906 GNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDREL 985 (1282)
T ss_pred ccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchh
Confidence 777788777777766666554332 35799999999999999999999999999998887643211 233334556
Q ss_pred HHHHHHHHhccCCCccccccccccceeEeecCCEEEEecCCcCC----CCCCCCCCEEEEEeeeeccccccccCCCCChH
Q 000991 914 HLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNA----GVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDS 989 (1197)
Q Consensus 914 ~lira~L~aGlypnva~~~~~~~~~~~~t~~~~~v~iHPsSv~~----~~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~ 989 (1197)
.++++.||+++|||+|... +++ ...|.+++...||..|+|. ..-++|+||+||.|+++|..+..+..|.|+|+
T Consensus 986 ~~~~~lL~~~lypn~~~y~--ekr-kvLtTe~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPL 1062 (1282)
T KOG0921|consen 986 NLMRSLLVMALYPNVAYYV--EKR-KVLTTEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPL 1062 (1282)
T ss_pred HHHHHHHHhhcCCccceec--cce-eEEeecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChH
Confidence 7889999999999999653 333 3446677788889888864 23468999999999999999999999999999
Q ss_pred HHHHhhCcccccccCCc-EEEeCcEEEEEechhHHHHHHHHHHHHHHHHHHHHcCCCCCCc---cchHHHHHHHHHhccc
Q 000991 990 VLLLFGGNISRGGLDGH-LKMLGGYLEFFMKPELADTYLSLKREIEELTQQKLLNPELGIE---VQNELLLAVRLLVSED 1065 (1197)
Q Consensus 990 ~LlLFgg~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~lr~~l~~~l~~k~~~p~~~~~---~~~~~~~ai~~ll~~d 1065 (1197)
.|||||.+... .+|. ++.||+||+|.+++++|..+..||..+++|+.+..++|....+ .+.+++++|++|....
T Consensus 1063 QLLLF~SrKVq--sdgq~IV~VDdWIklqIshEaAAcItgLr~AmEaLvvev~knPaiIsqLdpvnarllnmiRdIs~pS 1140 (1282)
T KOG0921|consen 1063 QLLLFGSRKVQ--SDGQGIVRVDDWIKLQISHEAAACITGLRPAMEALVVEVCKNPAIISQLDPVNARLLNMIRDISRPS 1140 (1282)
T ss_pred HHhhhhhhhcc--ccCcceEEeeceeeEeccHHHHHHHhhhHHHHHHHHHHHhcChhHhhccCchhHHHHHHHHHhcccc
Confidence 99999988765 3565 8889999999999999999999999999999999999987543 2356999999998876
Q ss_pred CCC-----C------ceeccccCCCCC
Q 000991 1066 RCE-----G------RFVFGRQIPAPS 1081 (1197)
Q Consensus 1066 ~~~-----g------~~~~~~~~~~~~ 1081 (1197)
..+ | .-.||+...+|+
T Consensus 1141 Aa~inLmig~~l~~~StrygDGp~PPK 1167 (1282)
T KOG0921|consen 1141 AADINLMIGDSLLTDSTRYGDGPGPPK 1167 (1282)
T ss_pred cccccceeccCcccccccccCCCCCcc
Confidence 655 4 556677777774
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2e-83 Score=804.26 Aligned_cols=570 Identities=29% Similarity=0.408 Sum_probs=475.2
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
||++.+..+|+++|.+|+++||+|+|||||||++|+++++... ..++|+|++|||++|.|+++++++++++.+|.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 7999999999999999999999999999999999999998652 34689999999999999999999999999999
Q ss_pred eeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEeccc
Q 000991 377 SVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSAT 455 (1197)
Q Consensus 377 ~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSAT 455 (1197)
.|||.+++++..+.+++|+|+|+|+|++++..++.++++++|||||+|||++++|+++.+++.+.. .++++|+|+||||
T Consensus 76 ~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 76 TVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred EEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 999999999988888999999999999999999999999999999999999999999988887765 4689999999999
Q ss_pred CCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 000991 456 LNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDAL 535 (1197)
Q Consensus 456 l~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l 535 (1197)
++.+.|.+||++++++.++|+.|||+.+|+... . . .. +...
T Consensus 156 l~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~---------~--------~-----------------~~----~~~~- 196 (819)
T TIGR01970 156 LDGERLSSLLPDAPVVESEGRSFPVEIRYLPLR---------G--------D-----------------QR----LEDA- 196 (819)
T ss_pred CCHHHHHHHcCCCcEEEecCcceeeeeEEeecc---------h--------h-----------------hh----HHHH-
Confidence 999999999999999999999999999886420 0 0 00 0000
Q ss_pred HhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEecc
Q 000991 536 EAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACH 615 (1197)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lH 615 (1197)
+...+.+++.. ..|+||||+||+++|+.+++.|.... + .++.+.++|
T Consensus 197 ----------------------------v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~--~--~~~~v~pLH 243 (819)
T TIGR01970 197 ----------------------------VSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERL--D--SDVLICPLY 243 (819)
T ss_pred ----------------------------HHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhc--C--CCcEEEEec
Confidence 01112233332 36899999999999999999998631 1 368899999
Q ss_pred CCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCC
Q 000991 616 GSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGR 695 (1197)
Q Consensus 616 s~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR 695 (1197)
|+|+.++|.++|+.|++|++||||||||||+|||||+|+||||+|+++...||+.++++.|.+.|||+++|.||+|||||
T Consensus 244 g~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR 323 (819)
T TIGR01970 244 GELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGR 323 (819)
T ss_pred CCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeccccchhhhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHHHHHHhcccccCCc
Q 000991 696 VQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENEN 775 (1197)
Q Consensus 696 ~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~~L~~lGaLd~~~~ 775 (1197)
.++|.||+||+++.|..|.+++.|||+|++|.+++|+++.+|+.++.+| .+++||+..++..|++.|..+||||.+++
T Consensus 324 ~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~~~ 401 (819)
T TIGR01970 324 LEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQGR 401 (819)
T ss_pred CCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred cccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHHHHHHhhcccCChhhHHHHHHHHHH
Q 000991 776 LTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDG 855 (1197)
Q Consensus 776 lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~f~~~~~SDhl~~l~af~~ 855 (1197)
||++|+.|+.||+||++||||+.|+.++|.+++++|||+|+.++++-. ..+|....+.++..
T Consensus 402 lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~------------------~~~d~~~~~~~~~~ 463 (819)
T TIGR01970 402 LTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ------------------GGADLMNRLHRLQQ 463 (819)
T ss_pred cCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC------------------CcccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987521 12565544444432
Q ss_pred HHHHhhcccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccc
Q 000991 856 WKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKE 935 (1197)
Q Consensus 856 w~~~~~~~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s~~~~lira~L~aGlypnva~~~~~~ 935 (1197)
. . ...|. .+..+.+|+...+ +........ .... . +-.+|+.||=-.||+.. +
T Consensus 464 ~----~----~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~--~~~~--~-~g~lla~a~pdria~~r--~ 515 (819)
T TIGR01970 464 G----R----QGRGQ----------RAQQLAKKLRRRL---RFSQADSGA--IASH--A-LGLLLALAFPDRIAKRR--G 515 (819)
T ss_pred c----c----hhhHH----------HHHHHHHHHHHHh---CcCcCCCcc--cccc--h-HhHHHhhhChHhheecc--C
Confidence 1 0 01121 1233344443322 221000000 0011 1 44567777777788643 2
Q ss_pred ccceeEeecCCEEEEecCCcCCCCCCCCCCEEEEEeeeec---cccccccCCCCChHHHHHhhC
Q 000991 936 KSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKV---NSVFLRDSTGVSDSVLLLFGG 996 (1197)
Q Consensus 936 ~~~~~~t~~~~~v~iHPsSv~~~~~~~~~~~lvy~E~v~t---sk~yir~~T~V~p~~LlLFgg 996 (1197)
+...|....+..+.+++.|.+.+ .+|+|-.|+..+ ....|+-+++|++.||.-..+
T Consensus 516 ~~~~y~l~~G~~~~l~~~~~l~~-----~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~ 574 (819)
T TIGR01970 516 QPGRYQLANGRGAVLSAEDALAR-----EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLP 574 (819)
T ss_pred CCCeEECCCCCeeEeCCCCcccC-----CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhH
Confidence 22357766677799999998875 389999999744 234677999999999865444
No 12
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-82 Score=796.45 Aligned_cols=559 Identities=29% Similarity=0.425 Sum_probs=467.4
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
.||++....+|++++.+++++||+|+|||||||++|+++++... ..++|+|++|||++|.|+++++++++++.+|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 59999999999999999999999999999999999999998532 2348999999999999999999999999999
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecc
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSA 454 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSA 454 (1197)
..|||.+++++..+.+++|+|+|||+|++++..++.++++++|||||+|||++++|+++.+++.++. .++++|+|+|||
T Consensus 78 ~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 78 ETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred ceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 9999999999988888999999999999999999999999999999999999999999998887765 468899999999
Q ss_pred cCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHH
Q 000991 455 TLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDA 534 (1197)
Q Consensus 455 Tl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~ 534 (1197)
|++.+.|++||++++++.++|+.|||+.+|+... . . ..+++.
T Consensus 158 Tl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~---------~--------~---------------------~~~~~~ 199 (812)
T PRK11664 158 TLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLP---------A--------H---------------------QRFDEA 199 (812)
T ss_pred CCCHHHHHHhcCCCCEEEecCccccceEEeccCc---------h--------h---------------------hhHHHH
Confidence 9999999999999999999999999999886410 0 0 000000
Q ss_pred HHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEec
Q 000991 535 LEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLAC 614 (1197)
Q Consensus 535 l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~l 614 (1197)
+...+.+++.. ..|.+|||+||+++|+.+++.|... . ..++.+.++
T Consensus 200 -----------------------------v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~--~--~~~~~v~~L 245 (812)
T PRK11664 200 -----------------------------VARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASR--V--ASDVLLCPL 245 (812)
T ss_pred -----------------------------HHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHh--c--cCCceEEEe
Confidence 01122233332 3689999999999999999999863 1 125789999
Q ss_pred cCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccC
Q 000991 615 HGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAG 694 (1197)
Q Consensus 615 Hs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAG 694 (1197)
||+|+.++|++++..|++|++||||||||||+|||||+|++|||+|+++...||+.++++.|.+.|||+++|.||+||||
T Consensus 246 hg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaG 325 (812)
T PRK11664 246 YGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAG 325 (812)
T ss_pred eCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeccccchhhhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHHHHHHhcccccCC
Q 000991 695 RVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENE 774 (1197)
Q Consensus 695 R~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~~L~~lGaLd~~~ 774 (1197)
|.++|.||+||++..|+.|.+++.|||+|++|.+++|.++.+|..++.+| .++|||+..++.+|++.|..+||||.+|
T Consensus 326 R~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~g 403 (812)
T PRK11664 326 RLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQG 403 (812)
T ss_pred CCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred ccccccccccccCCchhhHHHHHHhhhcCCcc--hHHHHHHhhcCCCCcccCcchHHHHHHHHhhcccCChhhHHHHHHH
Q 000991 775 NLTVLGRNLSMLPVEPKLGKMLILGAIFNCLD--PVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRA 852 (1197)
Q Consensus 775 ~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~--~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~f~~~~~SDhl~~l~a 852 (1197)
+||++|+.|+.||+||++||||+.|+.++|.. .+..|||.|+.+++ +. ..+.+|++..+.
T Consensus 404 ~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~-----~~------------~~d~~~~l~~~~- 465 (812)
T PRK11664 404 RLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR-----SG------------SSDLGVALSRKQ- 465 (812)
T ss_pred CcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC-----CC------------cccHHHHHHHHH-
Confidence 99999999999999999999999999998653 56667776665421 00 012234443111
Q ss_pred HHHHHHHhhcccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHhccCCCccccc
Q 000991 853 YDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVV 932 (1197)
Q Consensus 853 f~~w~~~~~~~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s~~~~lira~L~aGlypnva~~~ 932 (1197)
..|+ ..+..+.+|+... .+ . .+...+..+||+||.-+||+..
T Consensus 466 -------------~~~~----------~~~~~~~~~~~~~---~~------~------~~~~~~~~~la~aypdriA~~r 507 (812)
T PRK11664 466 -------------PHWQ----------QRAQQLLKRLNVR---GG------E------ADSSLIAPLLALAFPDRIARRR 507 (812)
T ss_pred -------------HHHH----------HHHHHHHHHHHhh---cc------c------CChHHHHHHHHHHCHHHHhhhc
Confidence 1232 2233334444221 11 0 1234478899999999999753
Q ss_pred cccccceeEeecCCEEEEecCCcCCCCCCCCCCEEEEEeeeecc-c--cccccCCCCChHHHHHhhC
Q 000991 933 NKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVN-S--VFLRDSTGVSDSVLLLFGG 996 (1197)
Q Consensus 933 ~~~~~~~~~t~~~~~v~iHPsSv~~~~~~~~~~~lvy~E~v~ts-k--~yir~~T~V~p~~LlLFgg 996 (1197)
.....|....+..+.|||+|.+++ .+|+|+.|++.++ + ..|+-+++|++.||.-...
T Consensus 508 --~~~~~~~l~~G~~a~l~~~~~l~~-----~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~ 567 (812)
T PRK11664 508 --GQDGRYQLANGMGAMLDADDALSR-----HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCP 567 (812)
T ss_pred --CCCCeEEeeCCCeEEECCCCcccC-----CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHH
Confidence 222346555555699999999875 4899999997663 3 3477899999999865443
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.8e-55 Score=540.86 Aligned_cols=401 Identities=23% Similarity=0.362 Sum_probs=310.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHH-----HHHH-----ccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILES-----ETEA-----ARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 302 ~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~-----~~~~-----~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
.|+++++.+.+++++|++|+||||||+|+||++++. .+.. ..+..+.|+|++|||+||.|++.++.+..|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999874 1211 123456899999999999999999988776
Q ss_pred CcccceeeeEeeeccccC-------CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC
Q 000991 372 EKLGESVGYKVRLEGMKG-------RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR 444 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~~~~-------~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r 444 (1197)
......+.+.++++.... ...+|+++|++..+ +.++++++|||||||||...+|+++.+++.+....
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l------~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~ 321 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL------NKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI 321 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc------cccccCCEEEccccccCccchhHHHHHHHHhhhhc
Confidence 532222333445543321 24579999987422 36889999999999999999999999998776532
Q ss_pred ccceEEEecccCC--HHHHHhhhCCCCccccCCcc-cceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 445 PELRLILMSATLN--AELFSSYFGGAPMLHIPGFT-YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 445 ~~lklIlmSATl~--~~~f~~yf~~~pvi~i~gr~-~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
.|+++||||++ .+.|.+||++++.+.++|++ |||+.+|+++... +.. ...+
T Consensus 322 --rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~-------~~~-~~~y---------------- 375 (675)
T PHA02653 322 --RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYN-------PKN-KRAY---------------- 375 (675)
T ss_pred --CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcc-------ccc-chhh----------------
Confidence 38999999994 56899999999999999996 9999999764210 000 0000
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHh--hcCCCcEEEEeCCHHHHHHHHHHHHc
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVK--KERPGAVLVFMTGWDDINSLKDQLQA 599 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~--~~~~g~iLVFl~~~~ei~~l~~~L~~ 599 (1197)
++.. ...++..+.. ....+++|||+||+++++.+++.|..
T Consensus 376 ---------~~~~-----------------------------k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~ 417 (675)
T PHA02653 376 ---------IEEE-----------------------------KKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEK 417 (675)
T ss_pred ---------hHHH-----------------------------HHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHh
Confidence 0000 0001111111 12357999999999999999999986
Q ss_pred CCCCCCCCceEEEeccCCCCHHHHHHhcCCC-CCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccc
Q 000991 600 HPLLGDPSRVLLLACHGSMASSEQRLIFDKP-EDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLP 678 (1197)
Q Consensus 600 ~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f-~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~ 678 (1197)
.. .++.+.++||+|++.++ +++.| ++|+++||||||+||+|||||+|++|||+|+++.+. +..+ ..
T Consensus 418 ~~-----~~~~v~~LHG~Lsq~eq--~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g----~~ 484 (675)
T PHA02653 418 RL-----PIYDFYIIHGKVPNIDE--ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGG----KE 484 (675)
T ss_pred hc-----CCceEEeccCCcCHHHH--HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccC----cc
Confidence 41 24779999999998643 33444 689999999999999999999999999999887542 2222 25
Q ss_pred cccCHhhHHhhhcccCCCCCCeEEEeccccchhhhhhcCCccccccc---hhhhhHHhhhcCCCCHHHHHhhhcCCCChh
Q 000991 679 SWISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTP---LQSLCLQIKSLQLGSISEFLSRALQPPEPL 755 (1197)
Q Consensus 679 ~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~---L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~ 755 (1197)
.|+|+++|.||+|||||.++|.||+||++... .| |.+.+ |.+++|+++.+|++.+..+ +++||+..
T Consensus 485 ~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~~~~---~ldpP~~~ 553 (675)
T PHA02653 485 MFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLPEDL---FVIPSNLD 553 (675)
T ss_pred cccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCcccc---cCCCCCHH
Confidence 79999999999999999999999999998764 23 56666 8899999999999655443 89999999
Q ss_pred hHHHHHHHHHHhcccccCCccccc--cccccccCCchhhHHHHHHhhhc
Q 000991 756 SVKNAIEYLQIIGALDENENLTVL--GRNLSMLPVEPKLGKMLILGAIF 802 (1197)
Q Consensus 756 ~v~~Al~~L~~lGaLd~~~~lT~L--G~~ls~lPvdp~lgK~ll~g~~~ 802 (1197)
++..|++.|..+||+|+ +||.| |++|+.+ +.||++++|++.
T Consensus 554 ~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~ 596 (675)
T PHA02653 554 RLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGIL 596 (675)
T ss_pred HHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHh
Confidence 99999999999998865 79999 9999999 999999988643
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.2e-40 Score=412.04 Aligned_cols=423 Identities=21% Similarity=0.236 Sum_probs=289.6
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
...+..|.++++.+.++++++++||||||||+++.+++++.+.. + .+++++.|+|+||.|+++.+.+.. ..|.
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~--~k~v~i~P~raLa~q~~~~~~~l~--~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---G--LKSIYIVPLRSLAMEKYEELSRLR--SLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---C--CcEEEEechHHHHHHHHHHHHHHh--hcCC
Confidence 45688899999999999999999999999999999999987643 2 356666799999999999887532 2344
Q ss_pred eeeeEeeecc---ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCC--ChhHHHHHHHHHcccCccceEE
Q 000991 377 SVGYKVRLEG---MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGM--NEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 377 ~VGy~ir~e~---~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~--~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
.|+..+.... .....++|+|+||+.+...+..++ .+.++++|||||+|+.+- ....+..++..+...++++|+|
T Consensus 94 ~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI 173 (674)
T PRK01172 94 RVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARIL 173 (674)
T ss_pred eEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 4443332111 111357999999999888777665 589999999999997531 1223444444444456789999
Q ss_pred EecccC-CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHH
Q 000991 451 LMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIAS 529 (1197)
Q Consensus 451 lmSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~ 529 (1197)
+||||+ |.+.+++|++. +.+....+..|++....... ... .+..
T Consensus 174 ~lSATl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~----~~~------~~~~------------------------ 218 (674)
T PRK01172 174 ALSATVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRK----RLI------LDGY------------------------ 218 (674)
T ss_pred EEeCccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecC----eee------eccc------------------------
Confidence 999999 89999999964 45666667777664321100 000 0000
Q ss_pred HHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCC-CC---
Q 000991 530 AVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL-GD--- 605 (1197)
Q Consensus 530 ~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~-~~--- 605 (1197)
..... .+..++.... ..++++||||+++++++.++..|...... ..
T Consensus 219 ---------------------------~~~~~-~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~ 268 (674)
T PRK01172 219 ---------------------------ERSQV-DINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKV 268 (674)
T ss_pred ---------------------------ccccc-cHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccc
Confidence 00000 0112222222 24679999999999999999988753110 00
Q ss_pred --------------CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCC
Q 000991 606 --------------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALN 671 (1197)
Q Consensus 606 --------------~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~ 671 (1197)
.....|.+|||+|+.++|+.+++.|++|.++|||||+++++|||+|+..+||+ +.++ |+.
T Consensus 269 ~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~~~---~~~-- 342 (674)
T PRK01172 269 SSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DITR---YGN-- 342 (674)
T ss_pred cccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-CceE---eCC--
Confidence 00135889999999999999999999999999999999999999999877775 3332 332
Q ss_pred CCCCccccccCHhhHHhhhcccCCCC---CCeEEEec-cccchhhhhhc--CCccc----------cccchhhhhHHhhh
Q 000991 672 NTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLY-PRYVYDAFADY--QLPEL----------LRTPLQSLCLQIKS 735 (1197)
Q Consensus 672 ~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Ly-s~~~~~~l~~~--~~PEI----------lr~~L~~l~L~lk~ 735 (1197)
....++|.+++.||+|||||.+ .|.++.+. +...++.+..+ ..|+. .+..+...+.....
T Consensus 343 ----~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~ 418 (674)
T PRK01172 343 ----GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLA 418 (674)
T ss_pred ----CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhccc
Confidence 1235689999999999999996 57777664 33333322111 12332 22222222222222
Q ss_pred cCCCCHHHHHhhhc---CCC-C--hhhHHHHHHHHHHhcccccCC--ccccccccccccCCchhhHHHHHHhhh
Q 000991 736 LQLGSISEFLSRAL---QPP-E--PLSVKNAIEYLQIIGALDENE--NLTVLGRNLSMLPVEPKLGKMLILGAI 801 (1197)
Q Consensus 736 l~~~~i~~fL~~~l---dpP-~--~~~v~~Al~~L~~lGaLd~~~--~lT~LG~~ls~lPvdp~lgK~ll~g~~ 801 (1197)
.+..++.+|+...+ +++ + .+.++.|++.|.+.|+|+.++ .+|++|+.+|.+|++|..+++++.+..
T Consensus 419 ~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 492 (674)
T PRK01172 419 SSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFD 492 (674)
T ss_pred CCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 33356777764332 322 2 467899999999999998654 579999999999999999999876543
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-38 Score=404.88 Aligned_cols=426 Identities=20% Similarity=0.237 Sum_probs=285.7
Q ss_pred CHHHHHHHHHH-HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh--CCccc
Q 000991 299 SYKERDALLKA-ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER--GEKLG 375 (1197)
Q Consensus 299 i~~~q~~Il~~-I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~--g~~lg 375 (1197)
.++.|.+.++. +.+++++++++|||||||+++.++++..+.. ..++++++|+|+||.|+++++.... |..++
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~ 98 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----GGKALYIVPLRALASEKFEEFERFEELGVRVG 98 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----CCcEEEEeChHHHHHHHHHHHHHhhcCCCEEE
Confidence 44556666665 8899999999999999999999999987742 2467777799999999999997531 44444
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCC--ChhHHHHHHHHHcccCccceEEEe
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGM--NEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~--~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
..+|...... ......+|+||||+.+...+.... ++.++++|||||+|..+- ....+..++..+....++.|+|+|
T Consensus 99 ~~tGd~~~~~-~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~l 177 (737)
T PRK02362 99 ISTGDYDSRD-EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVAL 177 (737)
T ss_pred EEeCCcCccc-cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEE
Confidence 4444111111 112357999999999987776543 789999999999995321 122344444555555678999999
Q ss_pred cccC-CHHHHHhhhCCCCccccCCcccceeeeeh-HhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHH
Q 000991 453 SATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFL-ENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASA 530 (1197)
Q Consensus 453 SATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yl-edi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 530 (1197)
|||+ |++.+++|++.. .+....++.|+..... .+.. .....
T Consensus 178 SATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~-----~~~~~------------------------------- 220 (737)
T PRK02362 178 SATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAI-----HFDDS------------------------------- 220 (737)
T ss_pred cccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCee-----ccccc-------------------------------
Confidence 9999 889999999743 2333334444332110 0000 00000
Q ss_pred HHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC--C-----
Q 000991 531 VEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL--L----- 603 (1197)
Q Consensus 531 ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~--~----- 603 (1197)
...+.. +. .+....++...+. ..+++||||+++.+++.++..|..... .
T Consensus 221 -----------------~~~~~~--~~---~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~ 276 (737)
T PRK02362 221 -----------------QREVEV--PS---KDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAER 276 (737)
T ss_pred -----------------cccCCC--cc---chHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 000000 00 0011122222222 468999999999999999888864310 0
Q ss_pred -------------CC---------CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCC
Q 000991 604 -------------GD---------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGK 661 (1197)
Q Consensus 604 -------------~~---------~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~ 661 (1197)
.+ .-...|.+|||+|++++|+.+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 277 ~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~-- 354 (737)
T PRK02362 277 AELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD-- 354 (737)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec--
Confidence 00 001368999999999999999999999999999999999999999999999973
Q ss_pred CCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccc-----hhhhhhcCCccccccc------hh
Q 000991 662 AKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV-----YDAFADYQLPELLRTP------LQ 727 (1197)
Q Consensus 662 ~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~-----~~~l~~~~~PEIlr~~------L~ 727 (1197)
...||+..+ ..++|.++|.||+|||||.+ .|.|+.+..... |+.+.. ..||-.... |.
T Consensus 355 --~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~ 426 (737)
T PRK02362 355 --YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW-ADPEDVRSKLATEPALR 426 (737)
T ss_pred --ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh-CCCCceeecCCChhhHH
Confidence 234665432 24679999999999999986 399999986531 223221 123322222 33
Q ss_pred hhhHHhhhcC----CCCHHHHHhhhc-CCC------ChhhHHHHHHHHHHhcccccCCc---cccccccccccCCchhhH
Q 000991 728 SLCLQIKSLQ----LGSISEFLSRAL-QPP------EPLSVKNAIEYLQIIGALDENEN---LTVLGRNLSMLPVEPKLG 793 (1197)
Q Consensus 728 ~l~L~lk~l~----~~~i~~fL~~~l-dpP------~~~~v~~Al~~L~~lGaLd~~~~---lT~LG~~ls~lPvdp~lg 793 (1197)
..++.....+ ..++.+|+..++ ..+ -.+.++.+++.|.+.|+|+.+++ +|++|+.+|.++++|..+
T Consensus 427 ~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~ 506 (737)
T PRK02362 427 THVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSA 506 (737)
T ss_pred HHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHH
Confidence 3344444444 245666664333 222 22458999999999999987764 899999999999999999
Q ss_pred HHHHHhhh
Q 000991 794 KMLILGAI 801 (1197)
Q Consensus 794 K~ll~g~~ 801 (1197)
+.+..+..
T Consensus 507 ~~~~~~l~ 514 (737)
T PRK02362 507 AEIIDGLE 514 (737)
T ss_pred HHHHHHhh
Confidence 99887643
No 16
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-38 Score=348.75 Aligned_cols=318 Identities=20% Similarity=0.239 Sum_probs=231.5
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
..|...|++ .+..+..|++||..|+||||||.++.++|++++++..+. ...+|+.|+|+||.|+++.+. -+|...|
T Consensus 82 ~~PT~IQ~~-aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~--~~~lVLtPtRELA~QI~e~fe-~Lg~~ig 157 (476)
T KOG0330|consen 82 KKPTKIQSE-AIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKL--FFALVLTPTRELAQQIAEQFE-ALGSGIG 157 (476)
T ss_pred CCCchhhhh-hcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC--ceEEEecCcHHHHHHHHHHHH-HhccccC
Confidence 456666554 455566899999999999999999999999999975444 456666699999999999773 3333333
Q ss_pred ceeeeEeee------ccccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccc
Q 000991 376 ESVGYKVRL------EGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1197)
Q Consensus 376 ~~VGy~ir~------e~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~l 447 (1197)
..|-.-+.. ....++.++|+|+|||.|.+++.+.. .++.++++|+|||+ |-++.||...+=+.+-..+++.
T Consensus 158 lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~er 236 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRER 236 (476)
T ss_pred eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccc
Confidence 222111111 11234678999999999999998544 78999999999999 7788888776555554456788
Q ss_pred eEEEecccCCHH--HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhh
Q 000991 448 RLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1197)
Q Consensus 448 klIlmSATl~~~--~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1197)
|.+++|||++.+ .+.. ..-.-|+++... .+.
T Consensus 237 qt~LfsATMt~kv~kL~r----------asl~~p~~v~~s-------------------------------------~ky 269 (476)
T KOG0330|consen 237 QTFLFSATMTKKVRKLQR----------ASLDNPVKVAVS-------------------------------------SKY 269 (476)
T ss_pred eEEEEEeecchhhHHHHh----------hccCCCeEEecc-------------------------------------chh
Confidence 999999999644 2111 011112221110 000
Q ss_pred hhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCC
Q 000991 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1197)
Q Consensus 526 ~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 605 (1197)
++.+.+.+.+... ........+.++++...++++||||++....+.++-.|...
T Consensus 270 ~tv~~lkQ~ylfv---------------------~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l----- 323 (476)
T KOG0330|consen 270 QTVDHLKQTYLFV---------------------PGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL----- 323 (476)
T ss_pred cchHHhhhheEec---------------------cccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc-----
Confidence 1111111111100 11112234667777777799999999999999999999987
Q ss_pred CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhh
Q 000991 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1197)
Q Consensus 606 ~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas 685 (1197)
++...++||.|++..|.-.|+.|++|.+.|++||++|++|+|||.|++|||+++|. +-.+
T Consensus 324 --g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~------------------~skD 383 (476)
T KOG0330|consen 324 --GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT------------------HSKD 383 (476)
T ss_pred --CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC------------------cHHH
Confidence 78899999999999999999999999999999999999999999999999965554 4457
Q ss_pred HHhhhcccCCCC-CCeEEEeccccchh
Q 000991 686 ARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 686 ~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
|+||+||+||+| +|.++.|.+.++.+
T Consensus 384 YIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 384 YIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred HHHHcccccccCCCcceEEEEehhhhH
Confidence 789999999995 79999999985433
No 17
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.3e-36 Score=380.23 Aligned_cols=432 Identities=19% Similarity=0.172 Sum_probs=276.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHH-HHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 288 QKMLEFRRSLPSYKERDALLK-AISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 288 ~~~~~~R~~LPi~~~q~~Il~-~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
.+.++.+.---.++.|.+.+. .+.+++++++++|||||||+++.+++++.+... ..++|++.|+++||.|+++++
T Consensus 13 ~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----~~~~l~l~P~~aLa~q~~~~~ 88 (720)
T PRK00254 13 KRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----GGKAVYLVPLKALAEEKYREF 88 (720)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----CCeEEEEeChHHHHHHHHHHH
Confidence 344444333334555666665 588999999999999999999999999887642 246777789999999999988
Q ss_pred HHH--hCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCC--hhHHHHHHHHHc
Q 000991 367 AAE--RGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMN--EDFLLIVLKELL 441 (1197)
Q Consensus 367 a~e--~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~--~D~Ll~lLr~ll 441 (1197)
... .|..++...|-... ......+++|+|+||+.+...+.... +++++++|||||+|..+-. ...+..++..+
T Consensus 89 ~~~~~~g~~v~~~~Gd~~~-~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l- 166 (720)
T PRK00254 89 KDWEKLGLRVAMTTGDYDS-TDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM- 166 (720)
T ss_pred HHHhhcCCEEEEEeCCCCC-chhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhc-
Confidence 652 23333322331110 11112457999999999987776543 7899999999999963211 12233333332
Q ss_pred ccCccceEEEecccC-CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHH
Q 000991 442 PRRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1197)
Q Consensus 442 ~~r~~lklIlmSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~ 520 (1197)
..+.|+|+||||+ |++.+++|++.. .+....+..|........ ++ ....+ ..
T Consensus 167 --~~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~-----~~-----~~~~~---~~----------- 219 (720)
T PRK00254 167 --LGRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQ-----GF-----LFWED---GK----------- 219 (720)
T ss_pred --CcCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecC-----Ce-----eeccC---cc-----------
Confidence 3568999999999 899999999753 333333444432211000 00 00000 00
Q ss_pred HhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcC
Q 000991 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1197)
Q Consensus 521 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~ 600 (1197)
.... ...+..++...++ .++++||||+++..++.++..|...
T Consensus 220 ---~~~~---------------------------------~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~ 261 (720)
T PRK00254 220 ---IERF---------------------------------PNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKK 261 (720)
T ss_pred ---hhcc---------------------------------hHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHH
Confidence 0000 0001112223233 3578999999999998887666431
Q ss_pred C--CCC------------------C------CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEE
Q 000991 601 P--LLG------------------D------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVV 654 (1197)
Q Consensus 601 ~--~~~------------------~------~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~ 654 (1197)
. ... . .....|.+|||+|++++|..+++.|++|.++|||||+++++|||+|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~ 341 (720)
T PRK00254 262 IKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFR 341 (720)
T ss_pred HHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceE
Confidence 0 000 0 0123589999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccc----hhhhh---------hcCC
Q 000991 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV----YDAFA---------DYQL 718 (1197)
Q Consensus 655 ~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~----~~~l~---------~~~~ 718 (1197)
+||... ..|+. +....++.++|.||+|||||.+ .|.|+.+.+... ++.+. ..+.
T Consensus 342 vVI~~~----~~~~~------~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~ 411 (720)
T PRK00254 342 VIIRDT----KRYSN------FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSN 411 (720)
T ss_pred EEECCc----eEcCC------CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCc
Confidence 999633 22431 1123456789999999999975 599998876433 33321 1122
Q ss_pred ccccccchhhhhHHhhhcCCCCHHHHHhhhc---CCCC----hhhHHHHHHHHHHhcccccCC----ccccccccccccC
Q 000991 719 PELLRTPLQSLCLQIKSLQLGSISEFLSRAL---QPPE----PLSVKNAIEYLQIIGALDENE----NLTVLGRNLSMLP 787 (1197)
Q Consensus 719 PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~l---dpP~----~~~v~~Al~~L~~lGaLd~~~----~lT~LG~~ls~lP 787 (1197)
++.++..+...+..-..-...++.+||..++ ..|+ ...++.++..|.+.|.|+.++ .+|++|+.+|.++
T Consensus 412 es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~ 491 (720)
T PRK00254 412 ESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLY 491 (720)
T ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHh
Confidence 2333333333322211112234556665544 2233 245778899999999986542 4799999999999
Q ss_pred CchhhHHHHHHhh
Q 000991 788 VEPKLGKMLILGA 800 (1197)
Q Consensus 788 vdp~lgK~ll~g~ 800 (1197)
++|..++++..+.
T Consensus 492 i~~~t~~~~~~~l 504 (720)
T PRK00254 492 IDPLTAKKFKDAF 504 (720)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999887553
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.5e-36 Score=366.76 Aligned_cols=311 Identities=19% Similarity=0.244 Sum_probs=223.8
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC----Ccc
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG----EKL 374 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g----~~l 374 (1197)
.+..|.++++.+.++++++++||||||||+++.+++++.+.... ..+.++++.|||+||.|+++.+..... ..+
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v 104 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--FRVQALVLCPTRELADQVAKEIRRLARFIPNIKV 104 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--CCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 34567788888889999999999999999999999998874322 234566666999999999988765432 222
Q ss_pred cceee-eEe--eeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEE
Q 000991 375 GESVG-YKV--RLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 375 g~~VG-y~i--r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
...+| ..+ ..+. ...+++|+|+|||.|++++.... .++++++|||||||+. ++..|...+...+....++.+++
T Consensus 105 ~~~~Gg~~~~~~~~~-l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~-l~~g~~~~l~~i~~~~~~~~q~l 182 (460)
T PRK11776 105 LTLCGGVPMGPQIDS-LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRM-LDMGFQDAIDAIIRQAPARRQTL 182 (460)
T ss_pred EEEECCCChHHHHHH-hcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHH-hCcCcHHHHHHHHHhCCcccEEE
Confidence 22222 111 1111 12568999999999999987655 6899999999999953 44444444333333344577899
Q ss_pred EecccCCH--HHHHhhhCCCCc-cccCCcc--cceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhh
Q 000991 451 LMSATLNA--ELFSSYFGGAPM-LHIPGFT--YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1197)
Q Consensus 451 lmSATl~~--~~f~~yf~~~pv-i~i~gr~--~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1197)
++|||++. ..+...|...|. +.+.... ..++.+|..
T Consensus 183 l~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~--------------------------------------- 223 (460)
T PRK11776 183 LFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYE--------------------------------------- 223 (460)
T ss_pred EEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEE---------------------------------------
Confidence 99999954 344444433322 2221110 011111110
Q ss_pred hhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCC
Q 000991 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1197)
Q Consensus 526 ~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 605 (1197)
.+.......+..++....++++||||+++++++.+++.|...
T Consensus 224 ---------------------------------~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----- 265 (460)
T PRK11776 224 ---------------------------------VSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ----- 265 (460)
T ss_pred ---------------------------------eCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC-----
Confidence 000001123444455556778999999999999999999876
Q ss_pred CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhh
Q 000991 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1197)
Q Consensus 606 ~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas 685 (1197)
++.+.++||+|++.+|+.+++.|++|..+|||||+++++|||||+|++||++|+|. +..+
T Consensus 266 --~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~------------------~~~~ 325 (460)
T PRK11776 266 --GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR------------------DPEV 325 (460)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC------------------CHhH
Confidence 56799999999999999999999999999999999999999999999999977776 6678
Q ss_pred HHhhhcccCCCC-CCeEEEeccccch
Q 000991 686 ARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 686 ~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
|.||+|||||.+ .|.||.|++..+.
T Consensus 326 yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 326 HVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred hhhhcccccCCCCcceEEEEEchhHH
Confidence 889999999995 6999999987644
No 19
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-37 Score=359.31 Aligned_cols=324 Identities=21% Similarity=0.278 Sum_probs=232.1
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHH----ccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEA----ARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~----~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
.-|...| ...+..+..++++|..+.||||||+++.++++.++... .++....++|+.|||+||.|+.+.+ .+++
T Consensus 112 ~~PtpIQ-aq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~-~~~~ 189 (519)
T KOG0331|consen 112 EKPTPIQ-AQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEA-REFG 189 (519)
T ss_pred CCCchhh-hcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHH-HHHc
Confidence 3455444 55566677999999999999999999999999988751 2344567788889999999998755 4555
Q ss_pred Cccc--ceeeeE-----eeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHccc
Q 000991 372 EKLG--ESVGYK-----VRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1197)
Q Consensus 372 ~~lg--~~VGy~-----ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~ 443 (1197)
..++ ..+=|+ .+.. ...+..+|+|+|||+|++++.... .|++++|+|+|||+ |.++.+|--.+-+.+-..
T Consensus 190 ~~~~~~~~cvyGG~~~~~Q~~-~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i 267 (519)
T KOG0331|consen 190 KSLRLRSTCVYGGAPKGPQLR-DLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQI 267 (519)
T ss_pred CCCCccEEEEeCCCCccHHHH-HHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhc
Confidence 5444 222221 1111 223568999999999999998776 89999999999999 668888777766666555
Q ss_pred -CccceEEEecccCCHH--HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHH
Q 000991 444 -RPELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1197)
Q Consensus 444 -r~~lklIlmSATl~~~--~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~ 520 (1197)
+++.|+++.|||.+.+ .|++=|-+.|+-. .+-+.++.
T Consensus 268 ~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i--------~ig~~~~~-------------------------------- 307 (519)
T KOG0331|consen 268 PRPDRQTLMFSATWPKEVRQLAEDFLNNPIQI--------NVGNKKEL-------------------------------- 307 (519)
T ss_pred CCCcccEEEEeeeccHHHHHHHHHHhcCceEE--------Eecchhhh--------------------------------
Confidence 5566899999999755 3333221121111 01111000
Q ss_pred HhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcC
Q 000991 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1197)
Q Consensus 521 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~ 600 (1197)
.....+.+.+..++ ..-....+..+|..+. ...++++||||.++..++++...|...
T Consensus 308 -----~a~~~i~qive~~~-----------------~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~ 364 (519)
T KOG0331|consen 308 -----KANHNIRQIVEVCD-----------------ETAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK 364 (519)
T ss_pred -----hhhcchhhhhhhcC-----------------HHHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc
Confidence 00001111111110 0011123444555554 556789999999999999999999875
Q ss_pred CCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccc
Q 000991 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSW 680 (1197)
Q Consensus 601 ~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~ 680 (1197)
.+.+..+||+.++.||..+++.|++|+..||||||+|++|+|||||++||++++|.
T Consensus 365 -------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~----------------- 420 (519)
T KOG0331|consen 365 -------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPN----------------- 420 (519)
T ss_pred -------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCC-----------------
Confidence 46689999999999999999999999999999999999999999999999955554
Q ss_pred cCHhhHHhhhcccCCC-CCCeEEEeccccchh
Q 000991 681 ISKAAARQRRGRAGRV-QPGECYHLYPRYVYD 711 (1197)
Q Consensus 681 iSkas~~QR~GRAGR~-~~G~cy~Lys~~~~~ 711 (1197)
+..+|.||+||+||. +.|.+|.+|+...+.
T Consensus 421 -~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 421 -NVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred -CHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 445677999999997 579999999987664
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.9e-36 Score=361.77 Aligned_cols=335 Identities=19% Similarity=0.234 Sum_probs=232.5
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc--cCCceEEEecchHHHHHHHH
Q 000991 285 PEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA--RGAACSIICTQPRRISAMAV 362 (1197)
Q Consensus 285 ~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~--~g~~~~IivtqPrR~LA~qv 362 (1197)
+...+.+....--..+..|.+.+..+.++++++++||||||||+++.+++++.+.... .+..++++|++|+++||.|+
T Consensus 10 ~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~ 89 (434)
T PRK11192 10 ESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQV 89 (434)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHH
Confidence 3333444443444445677777888889999999999999999999999998876421 23346788889999999999
Q ss_pred HHHHHHHh---CCcccceeeeEe--eeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHH
Q 000991 363 SERVAAER---GEKLGESVGYKV--RLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIV 436 (1197)
Q Consensus 363 a~rVa~e~---g~~lg~~VGy~i--r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~l 436 (1197)
++.+.... +..++..+|-.. ........+.+|+|+|||+|++.+.... .+.++++|||||||.. ++..+...+
T Consensus 90 ~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~-l~~~~~~~~ 168 (434)
T PRK11192 90 ADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM-LDMGFAQDI 168 (434)
T ss_pred HHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH-hCCCcHHHH
Confidence 88775543 333333333100 0111123567899999999999987766 5889999999999953 343343333
Q ss_pred HHHHcccCccceEEEecccCCHH---HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHH
Q 000991 437 LKELLPRRPELRLILMSATLNAE---LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1197)
Q Consensus 437 Lr~ll~~r~~lklIlmSATl~~~---~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~ 513 (1197)
-......+...++++||||++.+ .|..++...|+ ........ .....+.
T Consensus 169 ~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~----------~i~~~~~~--------~~~~~i~---------- 220 (434)
T PRK11192 169 ETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV----------EVEAEPSR--------RERKKIH---------- 220 (434)
T ss_pred HHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE----------EEEecCCc--------ccccCce----------
Confidence 33223334567899999999654 34444432221 11000000 0000000
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHH
Q 000991 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSL 593 (1197)
Q Consensus 514 ~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l 593 (1197)
.+.....+......++.++++....+++||||+++++++.+
T Consensus 221 ---------------------------------------~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 221 ---------------------------------------QWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred ---------------------------------------EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHH
Confidence 00000001122334566666666678999999999999999
Q ss_pred HHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCC
Q 000991 594 KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNT 673 (1197)
Q Consensus 594 ~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~ 673 (1197)
++.|... ++.+..+||+|+..+|..+++.|++|.++|||||+++++|||||+|++||+++.|.
T Consensus 262 ~~~L~~~-------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~---------- 324 (434)
T PRK11192 262 AGWLRKA-------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR---------- 324 (434)
T ss_pred HHHHHhC-------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC----------
Confidence 9999875 56789999999999999999999999999999999999999999999999966664
Q ss_pred CCccccccCHhhHHhhhcccCCCC-CCeEEEeccccchhh
Q 000991 674 PCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 674 ~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
|...|.||+|||||.+ .|.++.+++..++..
T Consensus 325 --------s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 325 --------SADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred --------CHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 6778899999999985 699999998766543
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8e-36 Score=356.74 Aligned_cols=313 Identities=17% Similarity=0.194 Sum_probs=217.3
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc-----CCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR-----GAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~-----g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
-|. ..|.+.+..+.++++++++||||||||+++.+++++.+..... ...+.++|++|+|+||.|+++.+... .
T Consensus 30 ~pt-~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l-~ 107 (423)
T PRK04837 30 NCT-PIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPL-A 107 (423)
T ss_pred CCC-HHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHH-h
Confidence 444 4556667778899999999999999999999999988864321 22457888889999999998766443 2
Q ss_pred CcccceeeeEeeecc------ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccC
Q 000991 372 EKLGESVGYKVRLEG------MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR 444 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~------~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r 444 (1197)
...+..++.-...+. ....+++|+|+|||.|++++.... .++++++|||||||+. ++..+...+ +.++...
T Consensus 108 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l-~~~~f~~~i-~~i~~~~ 185 (423)
T PRK04837 108 QATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRM-FDLGFIKDI-RWLFRRM 185 (423)
T ss_pred ccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHH-hhcccHHHH-HHHHHhC
Confidence 223333332221111 122457999999999999887654 7899999999999953 333333332 2232222
Q ss_pred ---ccceEEEecccCCHHH--H-HhhhCCCCccccCCccc---ceeeeehHhHHHHhhhccCcccccccchhhhhHHHHH
Q 000991 445 ---PELRLILMSATLNAEL--F-SSYFGGAPMLHIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQK 515 (1197)
Q Consensus 445 ---~~lklIlmSATl~~~~--f-~~yf~~~pvi~i~gr~~---PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~ 515 (1197)
...+.+++|||++... + ..++.+...+.+..... .+...+. +
T Consensus 186 ~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~-------------------~---------- 236 (423)
T PRK04837 186 PPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF-------------------Y---------- 236 (423)
T ss_pred CCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE-------------------e----------
Confidence 2445799999996542 2 22333221111111000 0000000 0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHH
Q 000991 516 QALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD 595 (1197)
Q Consensus 516 ~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~ 595 (1197)
.........+..++......++||||+++..++.+++
T Consensus 237 -------------------------------------------~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~ 273 (423)
T PRK04837 237 -------------------------------------------PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWG 273 (423)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 0001112234444454556789999999999999999
Q ss_pred HHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCC
Q 000991 596 QLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPC 675 (1197)
Q Consensus 596 ~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~ 675 (1197)
.|... ++.+..+||+|+.++|..+++.|++|+++|||||+++++|||||+|++||++++|.
T Consensus 274 ~L~~~-------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~------------ 334 (423)
T PRK04837 274 HLAAD-------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD------------ 334 (423)
T ss_pred HHHhC-------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC------------
Confidence 99875 56799999999999999999999999999999999999999999999999955554
Q ss_pred ccccccCHhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 676 LLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 676 l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
|..+|.||+|||||.| .|.|+.|++.+..
T Consensus 335 ------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 335 ------DCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred ------chhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 4556679999999996 6999999987643
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.9e-36 Score=358.79 Aligned_cols=314 Identities=18% Similarity=0.207 Sum_probs=222.2
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc----CCceEEEecchHHHHHHHHHHHHHHHhCC--
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR----GAACSIICTQPRRISAMAVSERVAAERGE-- 372 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~----g~~~~IivtqPrR~LA~qva~rVa~e~g~-- 372 (1197)
.+..|.++++.+.+++++|+++|||||||+++.+++++.+..... ...+++++++|||+||.|+.+.+......
T Consensus 24 pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~ 103 (456)
T PRK10590 24 PTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN 103 (456)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 345667777888899999999999999999999999998764321 12346777889999999999988765422
Q ss_pred -cccceee-eEeeec-cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 373 -KLGESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 373 -~lg~~VG-y~ir~e-~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
.....+| ...... ......++|+|||||+|++.+.... .++++++|||||||.. ++..+...+.+.+....+..+
T Consensus 104 ~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l-l~~~~~~~i~~il~~l~~~~q 182 (456)
T PRK10590 104 IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM-LDMGFIHDIRRVLAKLPAKRQ 182 (456)
T ss_pred CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH-hccccHHHHHHHHHhCCccCe
Confidence 1111122 111000 1123467999999999999887655 6899999999999953 444454443333333445678
Q ss_pred EEEecccCCHH--HHHhh-hCCCCccccCCcccc---eeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHh
Q 000991 449 LILMSATLNAE--LFSSY-FGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1197)
Q Consensus 449 lIlmSATl~~~--~f~~y-f~~~pvi~i~gr~~P---V~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~ 522 (1197)
++++|||++.+ .+... +.+...+.+..+... +..++.
T Consensus 183 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~------------------------------------- 225 (456)
T PRK10590 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH------------------------------------- 225 (456)
T ss_pred EEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEE-------------------------------------
Confidence 99999999643 34433 332222222111000 000000
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC
Q 000991 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1197)
Q Consensus 523 ~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~ 602 (1197)
.++......++.+++......++||||+++.+++.+++.|...
T Consensus 226 -----------------------------------~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~-- 268 (456)
T PRK10590 226 -----------------------------------FVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD-- 268 (456)
T ss_pred -----------------------------------EcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC--
Confidence 0000011223444555555678999999999999999999875
Q ss_pred CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 603 ~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
++.+..+||+|++++|..+++.|++|+++|||||+++++|||||+|++||+++.|. +
T Consensus 269 -----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~------------------~ 325 (456)
T PRK10590 269 -----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN------------------V 325 (456)
T ss_pred -----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC------------------C
Confidence 56788999999999999999999999999999999999999999999999977665 6
Q ss_pred HhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 683 KAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 683 kas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
..+|.||+|||||.+ .|.|+.+++..+.
T Consensus 326 ~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 326 PEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred HHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 678889999999995 6999999876543
No 23
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-35 Score=364.16 Aligned_cols=314 Identities=19% Similarity=0.235 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc---cCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA---RGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~---~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
+..|.+.++.+.+++++|+++|||||||+++.++++..+.... .+....++|++|||+||.|+.+.+... +...+.
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~-~~~~~i 232 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF-GASSKI 232 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH-hcccCc
Confidence 3456667778889999999999999999999999988775421 123456777779999999998877554 322222
Q ss_pred e--eeeEeeec----cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceE
Q 000991 377 S--VGYKVRLE----GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1197)
Q Consensus 377 ~--VGy~ir~e----~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lkl 449 (1197)
. +.|.-... ......++|+|+|||+|+++|.... .+.++++|||||||. -++.+|...+.+.+...+++.++
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~-mld~gf~~~i~~il~~~~~~~q~ 311 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR-MLDMGFEPQIRKIVSQIRPDRQT 311 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh-hhhcchHHHHHHHHHhCCCCCeE
Confidence 1 11211000 0112457999999999999987664 789999999999994 45666665555555456688999
Q ss_pred EEecccCCHH--HHHhhh-CCCCccccCCcc-----cceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 450 ILMSATLNAE--LFSSYF-GGAPMLHIPGFT-----YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 450 IlmSATl~~~--~f~~yf-~~~pvi~i~gr~-----~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
+++|||++.+ .+.+.+ ...++...-+.. ..+...+. ...
T Consensus 312 l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~-------------------~~~-------------- 358 (545)
T PTZ00110 312 LMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVF-------------------VVE-------------- 358 (545)
T ss_pred EEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEE-------------------EEe--------------
Confidence 9999999643 344333 222221110100 00000000 000
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~ 601 (1197)
.......+..++..+.. ..+++||||++++.++.+++.|...
T Consensus 359 -----------------------------------~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~- 400 (545)
T PTZ00110 359 -----------------------------------EHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLD- 400 (545)
T ss_pred -----------------------------------chhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHc-
Confidence 00000111122222222 4579999999999999999999865
Q ss_pred CCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccccc
Q 000991 602 LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWI 681 (1197)
Q Consensus 602 ~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~i 681 (1197)
++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||++++|.
T Consensus 401 ------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~------------------ 456 (545)
T PTZ00110 401 ------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN------------------ 456 (545)
T ss_pred ------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC------------------
Confidence 56688999999999999999999999999999999999999999999999977776
Q ss_pred CHhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 682 SKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 682 Skas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
+..+|.||+|||||.+ .|.||.+|+....
T Consensus 457 s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 457 QIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred CHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 6778999999999995 7999999997654
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.7e-35 Score=364.22 Aligned_cols=315 Identities=17% Similarity=0.195 Sum_probs=225.1
Q ss_pred hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
.-...+..|.+++..+.+++++|++||||||||+++.+++++.+.... ....+||++|||+||.|+++.+....+...
T Consensus 25 G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~--~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL--KAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc--CCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 334455667888888889999999999999999999999998775322 334677777999999999998876653322
Q ss_pred cceeeeEeeec------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccc
Q 000991 375 GESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1197)
Q Consensus 375 g~~VGy~ir~e------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~l 447 (1197)
+..+....... ......++|+|+|||.|++++.... .++++++|||||||+. ++..|...+...+....+..
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m-l~~gf~~di~~Il~~lp~~~ 181 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM-LRMGFIEDVETIMAQIPEGH 181 (629)
T ss_pred CceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH-hhcccHHHHHHHHHhCCCCC
Confidence 22222111110 1123468999999999999988765 6899999999999974 44444444433333344578
Q ss_pred eEEEecccCCHH--HH-HhhhCCCCccccCCccc---ceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 448 RLILMSATLNAE--LF-SSYFGGAPMLHIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 448 klIlmSATl~~~--~f-~~yf~~~pvi~i~gr~~---PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
++++||||++.. .+ ..|+.+...+.+..... .+...|..
T Consensus 182 q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~----------------------------------- 226 (629)
T PRK11634 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT----------------------------------- 226 (629)
T ss_pred eEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEE-----------------------------------
Confidence 899999999643 22 33443332232221110 00001100
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~ 601 (1197)
+........+..++.......+||||+++..+..+++.|...
T Consensus 227 -------------------------------------v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~- 268 (629)
T PRK11634 227 -------------------------------------VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN- 268 (629)
T ss_pred -------------------------------------echhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC-
Confidence 000001112334444455678999999999999999999876
Q ss_pred CCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccccc
Q 000991 602 LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWI 681 (1197)
Q Consensus 602 ~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~i 681 (1197)
++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+++.|.
T Consensus 269 ------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~------------------ 324 (629)
T PRK11634 269 ------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM------------------ 324 (629)
T ss_pred ------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC------------------
Confidence 56789999999999999999999999999999999999999999999999966554
Q ss_pred CHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 682 SKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 682 Skas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
+..+|.||+|||||.+ .|.|+.+++...
T Consensus 325 ~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 325 DSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred CHHHHHHHhccccCCCCcceEEEEechHH
Confidence 6678889999999996 599999987643
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-35 Score=358.07 Aligned_cols=326 Identities=18% Similarity=0.223 Sum_probs=227.6
Q ss_pred ChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC-----CceEEEecchHHHH
Q 000991 284 SPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-----AACSIICTQPRRIS 358 (1197)
Q Consensus 284 s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g-----~~~~IivtqPrR~L 358 (1197)
++.....+....---.+.+|.+++..+.+|+++|+++|||||||+++.+++++.+...... ...+++|+.|||+|
T Consensus 95 ~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreL 174 (475)
T PRK01297 95 APELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTREL 174 (475)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHH
Confidence 3333344443333446778899999999999999999999999999999999988753211 13567777799999
Q ss_pred HHHHHHHHHHHh---CCcccceeee---EeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChh
Q 000991 359 AMAVSERVAAER---GEKLGESVGY---KVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNED 431 (1197)
Q Consensus 359 A~qva~rVa~e~---g~~lg~~VGy---~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D 431 (1197)
|.|+++.+.... +..+...+|- ...........++|+|+||++|+..+.... .++++++|||||+|.. .+..
T Consensus 175 a~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l-~~~~ 253 (475)
T PRK01297 175 VVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRM-LDMG 253 (475)
T ss_pred HHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHH-Hhcc
Confidence 999998776543 2222222221 001111223467999999999998776544 7899999999999953 2333
Q ss_pred HHHHHHHHHcc---cCccceEEEecccCCH--HHHHhhhCCCCc-cccCCcccc---eeeeehHhHHHHhhhccCccccc
Q 000991 432 FLLIVLKELLP---RRPELRLILMSATLNA--ELFSSYFGGAPM-LHIPGFTYP---VRAYFLENILEMTRYRLNTYNQI 502 (1197)
Q Consensus 432 ~Ll~lLr~ll~---~r~~lklIlmSATl~~--~~f~~yf~~~pv-i~i~gr~~P---V~~~yledi~~l~~~~l~~~~~i 502 (1197)
+... ++.++. ...+.++|++|||++. ..+.+.|...|. +.+...... +..++.
T Consensus 254 ~~~~-l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------------- 315 (475)
T PRK01297 254 FIPQ-VRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVY----------------- 315 (475)
T ss_pred cHHH-HHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEE-----------------
Confidence 3322 223322 2335689999999854 333333332222 111110000 000000
Q ss_pred ccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEE
Q 000991 503 DDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLV 582 (1197)
Q Consensus 503 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLV 582 (1197)
.+.......++..++......++||
T Consensus 316 -------------------------------------------------------~~~~~~k~~~l~~ll~~~~~~~~IV 340 (475)
T PRK01297 316 -------------------------------------------------------AVAGSDKYKLLYNLVTQNPWERVMV 340 (475)
T ss_pred -------------------------------------------------------EecchhHHHHHHHHHHhcCCCeEEE
Confidence 0000001123444555555679999
Q ss_pred EeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCC
Q 000991 583 FMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKA 662 (1197)
Q Consensus 583 Fl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~ 662 (1197)
||+++++++.+++.|... ++.+..+||+++.++|..+++.|++|+++|||||+++++|||||+|++||++|+|
T Consensus 341 F~~s~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P 413 (475)
T PRK01297 341 FANRKDEVRRIEERLVKD-------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLP 413 (475)
T ss_pred EeCCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCC
Confidence 999999999999999865 4668899999999999999999999999999999999999999999999998877
Q ss_pred CcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 663 KETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 663 k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
. |.++|+||+|||||.+ .|.++.+++.+
T Consensus 414 ~------------------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 414 E------------------DPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred C------------------CHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 6 7889999999999996 69999998865
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.8e-35 Score=359.19 Aligned_cols=310 Identities=17% Similarity=0.209 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-----cCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-----RGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-----~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
+..|.+.+..+.+++++|+++|||||||+++.+++++.+.... ....+++||++|+|+||.|+++.+.. ++...
T Consensus 33 tpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~-l~~~~ 111 (572)
T PRK04537 33 TPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK-FGADL 111 (572)
T ss_pred CHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH-HhccC
Confidence 4556777788889999999999999999999999999876421 11235788888999999999988644 33344
Q ss_pred cceeeeEeeec------cccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcc---c
Q 000991 375 GESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP---R 443 (1197)
Q Consensus 375 g~~VGy~ir~e------~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~---~ 443 (1197)
+..++.-.... .....+.+|+|+|||.|++.+.... .+..+++|||||||+. ++..|...+ +.++. .
T Consensus 112 ~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~l-ld~gf~~~i-~~il~~lp~ 189 (572)
T PRK04537 112 GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM-FDLGFIKDI-RFLLRRMPE 189 (572)
T ss_pred CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHH-hhcchHHHH-HHHHHhccc
Confidence 43333211111 1122457899999999999887654 5788999999999963 333333322 22222 2
Q ss_pred CccceEEEecccCCHHH---HHhhhCCCCccccCCcccc---eeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 444 RPELRLILMSATLNAEL---FSSYFGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 444 r~~lklIlmSATl~~~~---f~~yf~~~pvi~i~gr~~P---V~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
+.+.++++||||++... ...++.....+.+...... +...+.
T Consensus 190 ~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~-------------------------------- 237 (572)
T PRK04537 190 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY-------------------------------- 237 (572)
T ss_pred ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEE--------------------------------
Confidence 23678999999996542 2233322111111111000 000000
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHH
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L 597 (1197)
. .........+..++......++||||+++..++.+++.|
T Consensus 238 ------------------------------------~----~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L 277 (572)
T PRK04537 238 ------------------------------------F----PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTL 277 (572)
T ss_pred ------------------------------------e----cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHH
Confidence 0 000001122334444455679999999999999999999
Q ss_pred HcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcc
Q 000991 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1197)
Q Consensus 598 ~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~ 677 (1197)
... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||||+|++||+++.|.
T Consensus 278 ~~~-------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~-------------- 336 (572)
T PRK04537 278 ERH-------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPF-------------- 336 (572)
T ss_pred HHc-------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCC--------------
Confidence 876 56799999999999999999999999999999999999999999999999966664
Q ss_pred ccccCHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 678 PSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 678 ~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
|..+|.||+|||||.+ .|.|+.|++...
T Consensus 337 ----s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 337 ----DAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred ----CHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 6778899999999995 699999987643
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.1e-35 Score=356.49 Aligned_cols=314 Identities=19% Similarity=0.227 Sum_probs=217.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-----cCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-----RGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-----~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
-|. ..|.+.+..+.+++++|+++|||||||+++.++++..+.... .+....++++.|||+||.|+.+.+... +
T Consensus 143 ~pt-piQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l-~ 220 (518)
T PLN00206 143 FPT-PIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL-G 220 (518)
T ss_pred CCC-HHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH-h
Confidence 444 445666777779999999999999999999999998875321 123456777779999999988766543 3
Q ss_pred CcccceeeeEeeecc------ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccC
Q 000991 372 EKLGESVGYKVRLEG------MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR 444 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~------~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r 444 (1197)
...+..+..-+..+. ....+.+|+|+|||+|++.+.... .++++++|||||||.. ++..|...+ ..++...
T Consensus 221 ~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~m-l~~gf~~~i-~~i~~~l 298 (518)
T PLN00206 221 KGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCM-LERGFRDQV-MQIFQAL 298 (518)
T ss_pred CCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHH-hhcchHHHH-HHHHHhC
Confidence 322221111111111 122457999999999999887654 7899999999999953 333333222 2333334
Q ss_pred ccceEEEecccCCH--HHHHhhhCCCCccccCCccc-c---eeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHH
Q 000991 445 PELRLILMSATLNA--ELFSSYFGGAPMLHIPGFTY-P---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQAL 518 (1197)
Q Consensus 445 ~~lklIlmSATl~~--~~f~~yf~~~pvi~i~gr~~-P---V~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~ 518 (1197)
++.|++++|||++. +.+..++...++....+... + +...+. +...
T Consensus 299 ~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~-------------------~~~~---------- 349 (518)
T PLN00206 299 SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAI-------------------WVET---------- 349 (518)
T ss_pred CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEE-------------------eccc----------
Confidence 67899999999954 45666665443322111110 0 000000 0000
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhh--cCCCcEEEEeCCHHHHHHHHHH
Q 000991 519 ALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK--ERPGAVLVFMTGWDDINSLKDQ 596 (1197)
Q Consensus 519 ~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~--~~~g~iLVFl~~~~ei~~l~~~ 596 (1197)
......+..++.. ...+++|||++++..++.+++.
T Consensus 350 -------------------------------------------~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~ 386 (518)
T PLN00206 350 -------------------------------------------KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANA 386 (518)
T ss_pred -------------------------------------------hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHH
Confidence 0000011112211 1236899999999999999999
Q ss_pred HHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCc
Q 000991 597 LQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCL 676 (1197)
Q Consensus 597 L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l 676 (1197)
|... .++.+..+||+++.++|..+++.|+.|+.+|||||+++++|||||+|++||+++.|.
T Consensus 387 L~~~------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~------------- 447 (518)
T PLN00206 387 ITVV------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN------------- 447 (518)
T ss_pred Hhhc------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC-------------
Confidence 9753 146688999999999999999999999999999999999999999999999966665
Q ss_pred cccccCHhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 677 LPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 677 ~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
|..+|.||+|||||.+ .|.++.+++.+..
T Consensus 448 -----s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 448 -----TIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred -----CHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 7789999999999996 6999999987553
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.4e-35 Score=366.74 Aligned_cols=340 Identities=19% Similarity=0.180 Sum_probs=227.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
+.++.+.--..+.+|.+.++.+.+++++++++|||||||+++.+++++.+... ..+.++++.|+|+||.|+.+++..
T Consensus 27 ~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q~~~~l~~ 103 (742)
T TIGR03817 27 AALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAADQLRAVRE 103 (742)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHHHHHHHHH
Confidence 33443344456788899999999999999999999999999999999988642 345677777999999999998866
Q ss_pred Hh--CCcccceeeeEeeec-cccCCCceEEEEcchHHHHHHhcCC-----CCCCccEEEEecCCCC-CCChhH---HHHH
Q 000991 369 ER--GEKLGESVGYKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-----SLRGVTHVIVDEIHER-GMNEDF---LLIV 436 (1197)
Q Consensus 369 e~--g~~lg~~VGy~ir~e-~~~~~~t~Ilv~Tpg~LLr~L~~d~-----~L~~is~VIIDEaHeR-~~~~D~---Ll~l 436 (1197)
.. +..++...|.....+ .....+++|+++||++|...+.... .++++++|||||+|.. +..... ++..
T Consensus 104 l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~r 183 (742)
T TIGR03817 104 LTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRR 183 (742)
T ss_pred hccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHH
Confidence 53 111111112111000 1122457999999999976544321 4889999999999963 222222 2333
Q ss_pred HHHHccc-CccceEEEecccC-CHHHHHhhhCCCCccccCCcccce---eeeehHhHHHHhhhccCcccccccchhhhhH
Q 000991 437 LKELLPR-RPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPV---RAYFLENILEMTRYRLNTYNQIDDYGQEKSW 511 (1197)
Q Consensus 437 Lr~ll~~-r~~lklIlmSATl-~~~~f~~yf~~~pvi~i~gr~~PV---~~~yledi~~l~~~~l~~~~~i~~~~~e~~~ 511 (1197)
++.+... ..+.|+|++|||+ |+..+.+++.+.|+..+....-|. ...+... . ... ....
T Consensus 184 L~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p-----------~-~~~-~~~~--- 247 (742)
T TIGR03817 184 LRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEP-----------P-LTE-LTGE--- 247 (742)
T ss_pred HHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecC-----------C-ccc-cccc---
Confidence 3333322 2467999999999 666666666555554443222221 1111100 0 000 0000
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHH
Q 000991 512 KMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDIN 591 (1197)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~ 591 (1197)
..... ..........++..++.. ..++||||++++.++
T Consensus 248 -----------~~~~~-----------------------------r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae 285 (742)
T TIGR03817 248 -----------NGAPV-----------------------------RRSASAEAADLLADLVAE--GARTLTFVRSRRGAE 285 (742)
T ss_pred -----------ccccc-----------------------------ccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHH
Confidence 00000 000001122334444443 478999999999999
Q ss_pred HHHHHHHcCCC-CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCC
Q 000991 592 SLKDQLQAHPL-LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDAL 670 (1197)
Q Consensus 592 ~l~~~L~~~~~-~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~ 670 (1197)
.++..|..... .....+..+..+||++++++|+.+++.|++|+++|||||+++|+|||||+|++||++|.|.
T Consensus 286 ~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~------- 358 (742)
T TIGR03817 286 LVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPG------- 358 (742)
T ss_pred HHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCC-------
Confidence 99998865310 0111135688999999999999999999999999999999999999999999999988886
Q ss_pred CCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccc
Q 000991 671 NNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1197)
Q Consensus 671 ~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~ 707 (1197)
|.++|+||+|||||.+ .|.++.+.+.
T Consensus 359 -----------s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 359 -----------TRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred -----------CHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 7789999999999996 5999888763
No 29
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-34 Score=349.64 Aligned_cols=313 Identities=22% Similarity=0.326 Sum_probs=226.8
Q ss_pred hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHH-ccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEA-ARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~-~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
..-|...| ...+..+..++++++.++||||||.++.+++++.+... ...... .+|+.|||+||.|+++.+.......
T Consensus 49 f~~pt~IQ-~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 49 FEEPTPIQ-LAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCCCHHH-HHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECCCHHHHHHHHHHHHHHHhhc
Confidence 34566555 55555666889999999999999999999999996521 111111 5666699999999998775543221
Q ss_pred ----ccceee---eEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCc
Q 000991 374 ----LGESVG---YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP 445 (1197)
Q Consensus 374 ----lg~~VG---y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~ 445 (1197)
+...+| +..+..... .+.+|+|+|||+|++++.... .++++.++|+|||+ |.++..|...+-+.+....+
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~l~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~ 204 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEALK-RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPP 204 (513)
T ss_pred CCccEEEEECCCCHHHHHHHHh-cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCc
Confidence 122222 111222222 358999999999999998775 78999999999999 44777777777666655666
Q ss_pred cceEEEecccCCHH--HHH-hhhCCCCccccCCcc-----cceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 446 ELRLILMSATLNAE--LFS-SYFGGAPMLHIPGFT-----YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 446 ~lklIlmSATl~~~--~f~-~yf~~~pvi~i~gr~-----~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
+.|++++|||++.. .++ .|..+...+.+.... -.++.+|+.
T Consensus 205 ~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~------------------------------- 253 (513)
T COG0513 205 DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLE------------------------------- 253 (513)
T ss_pred ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEE-------------------------------
Confidence 89999999999763 122 222221112211000 001111100
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCc-hhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHH
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIG-FNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQ 596 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~-~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~ 596 (1197)
++ .+....++..++.....+.+||||+++..++.++..
T Consensus 254 -----------------------------------------v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~ 292 (513)
T COG0513 254 -----------------------------------------VESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAES 292 (513)
T ss_pred -----------------------------------------eCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHH
Confidence 00 012445677777777777899999999999999999
Q ss_pred HHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCc
Q 000991 597 LQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCL 676 (1197)
Q Consensus 597 L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l 676 (1197)
|... ++.+..+||+|++++|..+++.|++|..+|+|||++|++|||||+|.+|||+++| .
T Consensus 293 l~~~-------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p--------~----- 352 (513)
T COG0513 293 LRKR-------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLP--------L----- 352 (513)
T ss_pred HHHC-------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCC--------C-----
Confidence 9987 6889999999999999999999999999999999999999999999999994444 4
Q ss_pred cccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 677 LPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 677 ~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
+...|.||+||+||.| .|.++.+++..
T Consensus 353 -----~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 353 -----DPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred -----CHHHheeccCccccCCCCCeEEEEeCcH
Confidence 4445669999999995 69999999863
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.1e-34 Score=338.86 Aligned_cols=314 Identities=18% Similarity=0.271 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC---Ccccc
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG---EKLGE 376 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g---~~lg~ 376 (1197)
+..|.+++..+.++++++++||||||||+++.+++++.+.. ....+++++++|+++||.|+.+.+..... ..+..
T Consensus 52 ~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~ 129 (401)
T PTZ00424 52 SAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHA 129 (401)
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC--CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEE
Confidence 44566777778899999999999999999999999876532 22345678888999999999876654322 12222
Q ss_pred eeeeEe-eec-cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 377 SVGYKV-RLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 377 ~VGy~i-r~e-~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.+|-.. +.+ .....+++|+|+||+.|.+.+.... .++++++|||||+|+. ....+...+...+....++.++|++|
T Consensus 130 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~-~~~~~~~~~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 130 CVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM-LSRGFKGQIYDVFKKLPPDVQVALFS 208 (401)
T ss_pred EECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH-HhcchHHHHHHHHhhCCCCcEEEEEE
Confidence 222111 000 1122357999999999999887665 6899999999999953 22223222333333345788999999
Q ss_pred ccCCHHH--HHhhhCCCCc-cccCCcccc---eeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhh
Q 000991 454 ATLNAEL--FSSYFGGAPM-LHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1197)
Q Consensus 454 ATl~~~~--f~~yf~~~pv-i~i~gr~~P---V~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~ 527 (1197)
||++.+. +...|...|. +.+...... +..+|.. . .
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~----~-------------------- 249 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVA---------------V----E-------------------- 249 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEe---------------c----C--------------------
Confidence 9996542 2222222111 111110000 0000000 0 0
Q ss_pred HHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCC
Q 000991 528 ASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPS 607 (1197)
Q Consensus 528 ~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~ 607 (1197)
..+.....+..+.......++||||++++.++.+++.|...
T Consensus 250 --------------------------------~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~------- 290 (401)
T PTZ00424 250 --------------------------------KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER------- 290 (401)
T ss_pred --------------------------------hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC-------
Confidence 00001112333334445578999999999999999999875
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHH
Q 000991 608 RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAAR 687 (1197)
Q Consensus 608 ~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~ 687 (1197)
++.+..+||+|+.++|..+++.|++|+++|||||+++++|||+|+|++||+++.|. |..+|.
T Consensus 291 ~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~------------------s~~~y~ 352 (401)
T PTZ00424 291 DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA------------------SPENYI 352 (401)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC------------------CHHHEe
Confidence 56689999999999999999999999999999999999999999999999966654 777888
Q ss_pred hhhcccCCCC-CCeEEEeccccchhh
Q 000991 688 QRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 688 QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
||+|||||.+ .|.|+.|++....+.
T Consensus 353 qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 353 HRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred ecccccccCCCCceEEEEEcHHHHHH
Confidence 9999999985 799999998876553
No 31
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=349.65 Aligned_cols=426 Identities=22% Similarity=0.253 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHH--HHhCCccccee
Q 000991 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA--AERGEKLGESV 378 (1197)
Q Consensus 301 ~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa--~e~g~~lg~~V 378 (1197)
.||.++...+.+++|+|||+|||||||..+.+.|+..+.+. ..++|+++|+|+||.+.++.+. +++|.+++..+
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~T 110 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIST 110 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEec
Confidence 46677777777789999999999999999999999888642 3478888899999999999998 56677766666
Q ss_pred e-eEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCC-----CCCChhHHHHHHHHHcccCccceEEE
Q 000991 379 G-YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHE-----RGMNEDFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 379 G-y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHe-----R~~~~D~Ll~lLr~ll~~r~~lklIl 451 (1197)
| |....+ .-.+++|+|+||+.+-..+.+.+ ++..+++|||||+|- ||.-.+. ++.+.....+.+|+|+
T Consensus 111 gD~~~~~~--~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~---iv~r~~~~~~~~rivg 185 (766)
T COG1204 111 GDYDLDDE--RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES---IVARMRRLNELIRIVG 185 (766)
T ss_pred CCcccchh--hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh---HHHHHHhhCcceEEEE
Confidence 6 322221 22578999999999987777666 789999999999993 6654444 4445555556689999
Q ss_pred ecccC-CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHH
Q 000991 452 MSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASA 530 (1197)
Q Consensus 452 mSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 530 (1197)
+|||+ |.+.+++|++..++ ... .+|+..+--. +.........+....
T Consensus 186 LSATlpN~~evA~wL~a~~~-~~~--~rp~~l~~~v---------~~~~~~~~~~~~~k~-------------------- 233 (766)
T COG1204 186 LSATLPNAEEVADWLNAKLV-ESD--WRPVPLRRGV---------PYVGAFLGADGKKKT-------------------- 233 (766)
T ss_pred EeeecCCHHHHHHHhCCccc-ccC--CCCcccccCC---------ccceEEEEecCcccc--------------------
Confidence 99999 99999999987665 222 2232211000 000000000000000
Q ss_pred HHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHc----C------
Q 000991 531 VEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA----H------ 600 (1197)
Q Consensus 531 ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~----~------ 600 (1197)
.+...+ +....++...+ ..++++||||+++..+...+..|.. .
T Consensus 234 ------------------------~~~~~~-~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~ 286 (766)
T COG1204 234 ------------------------WPLLID-NLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEK 286 (766)
T ss_pred ------------------------ccccch-HHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhh
Confidence 000001 11111122222 3568999999999999999888873 0
Q ss_pred --------CCCC-C-----------CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCC
Q 000991 601 --------PLLG-D-----------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCG 660 (1197)
Q Consensus 601 --------~~~~-~-----------~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G 660 (1197)
+... . .-...+..||++|+.++|..+.+.|+.|+++||+||++++.|+|.|.-.+||. |
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk-~ 365 (766)
T COG1204 287 IVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK-D 365 (766)
T ss_pred hhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe-e
Confidence 0010 0 00235889999999999999999999999999999999999999998777774 3
Q ss_pred CCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEec-cccch---hhhhhcCCccccccch------h
Q 000991 661 KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLY-PRYVY---DAFADYQLPELLRTPL------Q 727 (1197)
Q Consensus 661 ~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Ly-s~~~~---~~l~~~~~PEIlr~~L------~ 727 (1197)
. ..||+..+ .+.+++.++.||.|||||.| -|..+.+- +.... ........||.....| .
T Consensus 366 ~---~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~ 437 (766)
T COG1204 366 T---RRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLR 437 (766)
T ss_pred e---EEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccch
Confidence 3 33776222 35679999999999999996 35555554 32222 2234455666522211 1
Q ss_pred hhhHHhhhcCC----CCHHHHHhhhcCCCC-------hhhHHHHHHHHHHhc-ccccCC---ccccccccccccCCchhh
Q 000991 728 SLCLQIKSLQL----GSISEFLSRALQPPE-------PLSVKNAIEYLQIIG-ALDENE---NLTVLGRNLSMLPVEPKL 792 (1197)
Q Consensus 728 ~l~L~lk~l~~----~~i~~fL~~~ldpP~-------~~~v~~Al~~L~~lG-aLd~~~---~lT~LG~~ls~lPvdp~l 792 (1197)
..++.+.+.+. .....|+..++-.|. ...+..+++.|.+.+ .++... ..|.+|+.++++.++|..
T Consensus 438 ~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~s 517 (766)
T COG1204 438 TFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPES 517 (766)
T ss_pred heEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHH
Confidence 22222222221 123455555554443 346788999998886 555433 589999999999999999
Q ss_pred HHHHHHhhhcC
Q 000991 793 GKMLILGAIFN 803 (1197)
Q Consensus 793 gK~ll~g~~~~ 803 (1197)
++.+.-+...-
T Consensus 518 a~~~~~~l~~~ 528 (766)
T COG1204 518 AKIFRDLLAEL 528 (766)
T ss_pred HHHHHHHHHHh
Confidence 99987665443
No 32
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5e-33 Score=317.26 Aligned_cols=457 Identities=22% Similarity=0.261 Sum_probs=313.8
Q ss_pred hcChhhHHHHHHhhc---CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHH
Q 000991 282 QESPEGQKMLEFRRS---LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1197)
Q Consensus 282 ~~s~~~~~~~~~R~~---LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~L 358 (1197)
.-.+.++.+++.+.. ||+ |--++-..+.+|.+.+|+.+|+||||++..+.=+..++. ...+.++++|..+|
T Consensus 200 dipe~fk~~lk~~G~~eLlPV--Q~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfLvPLVAL 273 (830)
T COG1202 200 DIPEKFKRMLKREGIEELLPV--QVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFLVPLVAL 273 (830)
T ss_pred CCcHHHHHHHHhcCcceecch--hhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEEehhHHh
Confidence 344566677777643 565 335566678899999999999999999988887777664 23467788899999
Q ss_pred HHHHHHHHHHHhCCcccc----eeee---Eeeec---cccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCC----
Q 000991 359 AMAVSERVAAERGEKLGE----SVGY---KVRLE---GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIH---- 424 (1197)
Q Consensus 359 A~qva~rVa~e~g~~lg~----~VGy---~ir~e---~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaH---- 424 (1197)
|+|-++.+.... .++|. .||. ..+.+ ...+.+++|+|+|.+-+--+|.....+.++..|||||+|
T Consensus 274 ANQKy~dF~~rY-s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 274 ANQKYEDFKERY-SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred hcchHHHHHHHh-hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccc
Confidence 999999987765 34444 3441 11111 234467899999998877777777899999999999999
Q ss_pred -CCCCChhHHHHHHHHHcccCccceEEEecccC-CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCccccc
Q 000991 425 -ERGMNEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQI 502 (1197)
Q Consensus 425 -eR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i 502 (1197)
|||...|-|...|+.+ .|+.|+|.+|||+ |++.++++++. ..+...+|+.|++.+.+-.
T Consensus 353 eERG~RLdGLI~RLr~l---~~~AQ~i~LSATVgNp~elA~~l~a-~lV~y~~RPVplErHlvf~--------------- 413 (830)
T COG1202 353 EERGPRLDGLIGRLRYL---FPGAQFIYLSATVGNPEELAKKLGA-KLVLYDERPVPLERHLVFA--------------- 413 (830)
T ss_pred hhcccchhhHHHHHHHh---CCCCeEEEEEeecCChHHHHHHhCC-eeEeecCCCCChhHeeeee---------------
Confidence 6888888777777665 5689999999999 99999999964 4556677777776553210
Q ss_pred ccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEE
Q 000991 503 DDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLV 582 (1197)
Q Consensus 503 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLV 582 (1197)
......|+ -+...++..+. ...+.+-.|++||
T Consensus 414 --~~e~eK~~-------------ii~~L~k~E~~---------------------------------~~sskg~rGQtIV 445 (830)
T COG1202 414 --RNESEKWD-------------IIARLVKREFS---------------------------------TESSKGYRGQTIV 445 (830)
T ss_pred --cCchHHHH-------------HHHHHHHHHHh---------------------------------hhhccCcCCceEE
Confidence 00011111 01111111111 1112345689999
Q ss_pred EeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCC
Q 000991 583 FMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKA 662 (1197)
Q Consensus 583 Fl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~ 662 (1197)
|.+++..++.++..|... ++.+.|+|+||+..+|+.+...|.++.+.+||+|..++.|+|+|.-.+|..+=..
T Consensus 446 FT~SRrr~h~lA~~L~~k-------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 446 FTYSRRRCHELADALTGK-------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred EecchhhHHHHHHHhhcC-------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 999999999999999876 6778999999999999999999999999999999999999999987766542222
Q ss_pred CcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccc-cchhh-hhh----------cCCccccccch-
Q 000991 663 KETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPR-YVYDA-FAD----------YQLPELLRTPL- 726 (1197)
Q Consensus 663 k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~-~~~~~-l~~----------~~~PEIlr~~L- 726 (1197)
-..|+|..+|.||.|||||.. .|++|.|... ..|.. |.+ ...||-....-
T Consensus 519 --------------G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ 584 (830)
T COG1202 519 --------------GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYD 584 (830)
T ss_pred --------------ccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccC
Confidence 368999999999999999995 5999999532 22321 111 12222222111
Q ss_pred ----hhhhHHhhhcCCC----CHHHHHhhhcCCCChhhHHHHHHHHHHhcccccCC---ccccccccccccCCchhhHHH
Q 000991 727 ----QSLCLQIKSLQLG----SISEFLSRALQPPEPLSVKNAIEYLQIIGALDENE---NLTVLGRNLSMLPVEPKLGKM 795 (1197)
Q Consensus 727 ----~~l~L~lk~l~~~----~i~~fL~~~ldpP~~~~v~~Al~~L~~lGaLd~~~---~lT~LG~~ls~lPvdp~lgK~ 795 (1197)
.+-+|. ..+.. .+...-+..+- ..-....++..|.+.|.++.+| ++|+.|+.++..-+.|..+-.
T Consensus 585 ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~ 660 (830)
T COG1202 585 EEDEEENVLA--SAGVTNSLSVIERVNSLMLG--AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEF 660 (830)
T ss_pred cHHHHHHHHH--HhhhcCcHHHHhhcChhhcc--ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHH
Confidence 111222 11221 11111100111 1123578999999999999887 589999999999999999998
Q ss_pred HHHhhhcCCcchHHHHHHhhc-CCCCcccCcchHHHHHHHHhhcc
Q 000991 796 LILGAIFNCLDPVMTVVAGLS-VRDPFLMPFDKKDLAESAKAQFS 839 (1197)
Q Consensus 796 ll~g~~~~Cl~~~ltIaA~ls-~~~pF~~p~~~~~~a~~~r~~f~ 839 (1197)
|..+. ..--+|. .|++.|. ..+.++.++-+++.....+.++.
T Consensus 661 Ir~~v-~~~~~pl-~i~~~l~pfE~ayls~~l~r~i~~~~~~~vp 703 (830)
T COG1202 661 IREGV-LASMDPL-RIAAELEPFENAYLSGFLKRAIESALRGRVP 703 (830)
T ss_pred HHHhh-hccCChH-hHhhccccccccccChHHHHHHHHHhcCCCc
Confidence 88775 4455554 4555444 34444444445554444554443
No 33
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-34 Score=319.64 Aligned_cols=323 Identities=21% Similarity=0.261 Sum_probs=229.7
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC-CceEEEecchHHHHHHHHHH---HHHHH
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSE---RVAAE 369 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g-~~~~IivtqPrR~LA~qva~---rVa~e 369 (1197)
-..-|...|+..|.- ..-+++++.||.||||||.++.+++|+.++-...+ ...+|+|+.|||+||+|++. .++..
T Consensus 200 Gy~~PTpIQ~a~IPv-allgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPV-ALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCCCCchhhhcccH-HhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 344577666555544 45789999999999999999999999999865433 34578888899999999875 44455
Q ss_pred hCCcccceee-eEeee-ccccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cC
Q 000991 370 RGEKLGESVG-YKVRL-EGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RR 444 (1197)
Q Consensus 370 ~g~~lg~~VG-y~ir~-e~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r 444 (1197)
....+|..|| ..++. +......++|+|+|||+|.++|.+.+ .++++.++|+|||+ |.++..|-..+ ..++. ..
T Consensus 279 t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFadem-nEii~lcp 356 (691)
T KOG0338|consen 279 TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEM-NEIIRLCP 356 (691)
T ss_pred ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHHH-HHHHHhcc
Confidence 5555565555 22222 22233578999999999999999988 78999999999999 65666555444 44444 44
Q ss_pred ccceEEEecccCCHH--HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHh
Q 000991 445 PELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1197)
Q Consensus 445 ~~lklIlmSATl~~~--~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~ 522 (1197)
.+.|.+|+|||++.+ .+.+. .-.-||+++.-+.
T Consensus 357 k~RQTmLFSATMteeVkdL~sl----------SL~kPvrifvd~~----------------------------------- 391 (691)
T KOG0338|consen 357 KNRQTMLFSATMTEEVKDLASL----------SLNKPVRIFVDPN----------------------------------- 391 (691)
T ss_pred ccccceeehhhhHHHHHHHHHh----------hcCCCeEEEeCCc-----------------------------------
Confidence 577899999999654 22221 1122333332110
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC
Q 000991 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1197)
Q Consensus 523 ~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~ 602 (1197)
......+.+.+.... |.. -.+-..++..++...-...++||+.+++.+.++.-.|--.
T Consensus 392 --~~~a~~LtQEFiRIR----------------~~r--e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl-- 449 (691)
T KOG0338|consen 392 --KDTAPKLTQEFIRIR----------------PKR--EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL-- 449 (691)
T ss_pred --cccchhhhHHHheec----------------ccc--ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh--
Confidence 000011111111100 000 0011234445555445678999999999999998777554
Q ss_pred CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 603 ~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
++.+.-+||+|++.+|-..++.|+.+.+.|||||++|++|+||++|..|||+..|+ |
T Consensus 450 -----gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~------------------t 506 (691)
T KOG0338|consen 450 -----GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK------------------T 506 (691)
T ss_pred -----hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch------------------h
Confidence 66788999999999999999999999999999999999999999999999966666 6
Q ss_pred HhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 683 KAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 683 kas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
...|.||.||+.|.| .|..+.|.....
T Consensus 507 ~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 507 IEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred HHHHHHHhhhhhhcccCcceEEEecccc
Confidence 678889999999995 699999987653
No 34
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.9e-33 Score=317.14 Aligned_cols=330 Identities=22% Similarity=0.227 Sum_probs=240.2
Q ss_pred HHHhcChhh----HHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-------cCCce
Q 000991 279 QAWQESPEG----QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-------RGAAC 347 (1197)
Q Consensus 279 ~~~~~s~~~----~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-------~g~~~ 347 (1197)
.+|.+++.- +-+...+...|...|+.+|. ...+++++|..++||||||.+++++++..+.... ...+.
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 467665543 34444566678877766655 6678999999999999999999999998764221 12234
Q ss_pred EEEecchHHHHHHHHHHHH---HHHhCCcccceeeeEeeecc--ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEe
Q 000991 348 SIICTQPRRISAMAVSERV---AAERGEKLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVD 421 (1197)
Q Consensus 348 ~IivtqPrR~LA~qva~rV---a~e~g~~lg~~VGy~ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIID 421 (1197)
..++++|||+||.|+.+.- .+.+|..+...||-.-..+. ..+..|.|+++|||.|++.|.+.- .++...+||+|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvld 403 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLD 403 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEecc
Confidence 5667779999999986543 33344444445554333333 456789999999999999886544 68899999999
Q ss_pred cCCCCCCChhHHHHHHHHHccc---C--c--------------------cceEEEecccCCH--H-HHHhhhCCCCcccc
Q 000991 422 EIHERGMNEDFLLIVLKELLPR---R--P--------------------ELRLILMSATLNA--E-LFSSYFGGAPMLHI 473 (1197)
Q Consensus 422 EaHeR~~~~D~Ll~lLr~ll~~---r--~--------------------~lklIlmSATl~~--~-~f~~yf~~~pvi~i 473 (1197)
||+ |.++..|-..+.+.+-.. + | -.+.+++|||+++ + ....||..+-++.|
T Consensus 404 ead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vti 482 (673)
T KOG0333|consen 404 EAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTI 482 (673)
T ss_pred chh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEe
Confidence 999 335555444444333221 0 1 1578999999954 3 44567776555444
Q ss_pred CC--cccce-ee--eehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhh
Q 000991 474 PG--FTYPV-RA--YFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQ 548 (1197)
Q Consensus 474 ~g--r~~PV-~~--~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~ 548 (1197)
.. +..|. +. +++.
T Consensus 483 g~~gk~~~rveQ~v~m~~-------------------------------------------------------------- 500 (673)
T KOG0333|consen 483 GSAGKPTPRVEQKVEMVS-------------------------------------------------------------- 500 (673)
T ss_pred ccCCCCccchheEEEEec--------------------------------------------------------------
Confidence 32 22221 00 1100
Q ss_pred hccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcC
Q 000991 549 QSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFD 628 (1197)
Q Consensus 549 ~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~ 628 (1197)
.+....-|..++.+....+|+||+|+++.|+.+++.|.+. ++.+..|||+-++++|+.++.
T Consensus 501 ------------ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~-------g~~~~tlHg~k~qeQRe~aL~ 561 (673)
T KOG0333|consen 501 ------------EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA-------GYKVTTLHGGKSQEQRENALA 561 (673)
T ss_pred ------------chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc-------cceEEEeeCCccHHHHHHHHH
Confidence 0011223445556666789999999999999999999987 788999999999999999999
Q ss_pred CCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccc
Q 000991 629 KPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1197)
Q Consensus 629 ~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~ 707 (1197)
.|+.|.-.|+||||+|++|||||||.+|||++++| |...|.||+||+||.| .|.++.+++.
T Consensus 562 ~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 562 DFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred HHHhcCCCEEEEecccccCCCCCccceeeecchhh------------------hHHHHHHHhccccccccCceeEEEecc
Confidence 99999999999999999999999999999977777 7778899999999996 5999999998
Q ss_pred cc
Q 000991 708 YV 709 (1197)
Q Consensus 708 ~~ 709 (1197)
++
T Consensus 624 ~d 625 (673)
T KOG0333|consen 624 AD 625 (673)
T ss_pred ch
Confidence 77
No 35
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-33 Score=314.69 Aligned_cols=338 Identities=21% Similarity=0.228 Sum_probs=232.4
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-c--CCceEEEecchHHHHHHHHHHHHHHHh----C
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-R--GAACSIICTQPRRISAMAVSERVAAER----G 371 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-~--g~~~~IivtqPrR~LA~qva~rVa~e~----g 371 (1197)
..+.|.+.+..+.+|++|++.++||||||+++.+++++.+.... + ....-.+++.|||+||.|+.+.+.... .
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 45568888899999999999999999999999999999885432 2 222356777799999999987543332 1
Q ss_pred Ccccceeee-Eeeec--cccCCCceEEEEcchHHHHHHhcCC---CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCc
Q 000991 372 EKLGESVGY-KVRLE--GMKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP 445 (1197)
Q Consensus 372 ~~lg~~VGy-~ir~e--~~~~~~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~ 445 (1197)
..+...||- .+..+ .....+++|+|||||+|+++++... .+.+++++|+|||+ |-++..|-..+-..+-....
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPK 187 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhccc
Confidence 223334442 12111 2234678999999999999998744 35599999999999 65777766655444444445
Q ss_pred cceEEEecccCCHH--HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhh
Q 000991 446 ELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKR 523 (1197)
Q Consensus 446 ~lklIlmSATl~~~--~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~ 523 (1197)
..+.=++|||.+.+ .+... |-..||.+..-.. .
T Consensus 188 QRRTGLFSATq~~~v~dL~ra----------GLRNpv~V~V~~k-----------------------------------~ 222 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARA----------GLRNPVRVSVKEK-----------------------------------S 222 (567)
T ss_pred ccccccccchhhHHHHHHHHh----------hccCceeeeeccc-----------------------------------c
Confidence 67789999998543 22221 1222222211000 0
Q ss_pred hhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCC
Q 000991 524 KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL 603 (1197)
Q Consensus 524 ~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~ 603 (1197)
.....+.+.. .| -.+..+.....+.+++.+...+++|||.+|...++..+..+...
T Consensus 223 ~~~tPS~L~~--------~Y-------------~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~--- 278 (567)
T KOG0345|consen 223 KSATPSSLAL--------EY-------------LVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL--- 278 (567)
T ss_pred cccCchhhcc--------ee-------------eEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH---
Confidence 0000000000 00 01122334455777777778899999999999999999888765
Q ss_pred CCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCH
Q 000991 604 GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISK 683 (1197)
Q Consensus 604 ~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSk 683 (1197)
.....+..+||.|.+.+|..+++.|......|++||++|++|||||+|++||+ ||++.+.+
T Consensus 279 --l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~--------- 339 (567)
T KOG0345|consen 279 --LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPS--------- 339 (567)
T ss_pred --hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cCCCCChh---------
Confidence 12566999999999999999999999988899999999999999999999999 66666555
Q ss_pred hhHHhhhcccCCCC-CCeEEEeccc--cchhh-hhhcCCccccccch
Q 000991 684 AAARQRRGRAGRVQ-PGECYHLYPR--YVYDA-FADYQLPELLRTPL 726 (1197)
Q Consensus 684 as~~QR~GRAGR~~-~G~cy~Lys~--~~~~~-l~~~~~PEIlr~~L 726 (1197)
++.||+||+||.| .|.++.+... ..|-. |.-...|++-+...
T Consensus 340 -~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 340 -SFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred -HHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 4559999999995 6887766543 34544 44455676655444
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-32 Score=331.53 Aligned_cols=307 Identities=21% Similarity=0.206 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
.+.|.+++.++.+++++++++|||||||+++.++++.. + ...+|+.|+++|+.|..+++.. .|.......|
T Consensus 13 r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~--~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~ 83 (470)
T TIGR00614 13 RPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------D--GITLVISPLISLMEDQVLQLKA-SGIPATFLNS 83 (470)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------C--CcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 34678888889999999999999999999888887641 2 2455666999999998888753 3433222111
Q ss_pred eEeee------ccccCCCceEEEEcchHHHHHH--hcCC-CCCCccEEEEecCCCCCC-ChhHHHH--HHHHHcccCccc
Q 000991 380 YKVRL------EGMKGRDTRLMFCTTGILLRRL--LVDR-SLRGVTHVIVDEIHERGM-NEDFLLI--VLKELLPRRPEL 447 (1197)
Q Consensus 380 y~ir~------e~~~~~~t~Ilv~Tpg~LLr~L--~~d~-~L~~is~VIIDEaHeR~~-~~D~Ll~--lLr~ll~~r~~l 447 (1197)
..... ........+|+|+||+.+.... ...- ...++++|||||||+.+- ..+|-.. .+..+....|+.
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~ 163 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNV 163 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCC
Confidence 11100 1112345789999999875321 1111 467899999999996431 1222222 233344455788
Q ss_pred eEEEecccCCHHH---HHhhhCC-CCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhh
Q 000991 448 RLILMSATLNAEL---FSSYFGG-APMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKR 523 (1197)
Q Consensus 448 klIlmSATl~~~~---f~~yf~~-~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~ 523 (1197)
++++||||++... +.++++- .|.+...+...|.-.+...
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~------------------------------------- 206 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVR------------------------------------- 206 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEE-------------------------------------
Confidence 9999999997643 3344431 1221111111110000000
Q ss_pred hhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCC
Q 000991 524 KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL 603 (1197)
Q Consensus 524 ~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~ 603 (1197)
+. ..+.+..++..+.+......+||||+++++++.+++.|...
T Consensus 207 --------------------------------~~--~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~--- 249 (470)
T TIGR00614 207 --------------------------------RK--TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL--- 249 (470)
T ss_pred --------------------------------eC--CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc---
Confidence 00 00112223333333334456799999999999999999876
Q ss_pred CCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCH
Q 000991 604 GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISK 683 (1197)
Q Consensus 604 ~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSk 683 (1197)
++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+++.|+ |.
T Consensus 250 ----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~------------------s~ 307 (470)
T TIGR00614 250 ----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK------------------SM 307 (470)
T ss_pred ----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC------------------CH
Confidence 56789999999999999999999999999999999999999999999999988876 77
Q ss_pred hhHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 684 AAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 684 as~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
.+|.||+|||||.| +|.|+.+|+..+..
T Consensus 308 ~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 308 ESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred HHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 89999999999996 79999999887654
No 37
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=314.14 Aligned_cols=337 Identities=18% Similarity=0.193 Sum_probs=236.1
Q ss_pred HhcChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC--CceEEEecchHHHH
Q 000991 281 WQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG--AACSIICTQPRRIS 358 (1197)
Q Consensus 281 ~~~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g--~~~~IivtqPrR~L 358 (1197)
..-|+...+.+..-.-.-....|+..+.-+..++++++.|-||+|||+++.++..+.++..... ....++++.|||+|
T Consensus 87 ~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTREL 166 (543)
T KOG0342|consen 87 GSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTREL 166 (543)
T ss_pred cccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHH
Confidence 3344444444444444456677888888889999999999999999999999999998754311 22334455599999
Q ss_pred HHHHHHHHHHHhCCcccceeeeEeeeccc------cCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCCh
Q 000991 359 AMAVSERVAAERGEKLGESVGYKVRLEGM------KGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNE 430 (1197)
Q Consensus 359 A~qva~rVa~e~g~~lg~~VGy~ir~e~~------~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~ 430 (1197)
|+|++....+.+...-+..||+-+..... ....++|+|+|||+|+++|++.+ ...++.++|+|||+ |-++.
T Consensus 167 A~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~ 245 (543)
T KOG0342|consen 167 AMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDI 245 (543)
T ss_pred HHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhc
Confidence 99999877776655546667766654332 22479999999999999999877 46778899999999 55666
Q ss_pred hHHHHHHHHHcccCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCc-ccccccchhhh
Q 000991 431 DFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNT-YNQIDDYGQEK 509 (1197)
Q Consensus 431 D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~-~~~i~~~~~e~ 509 (1197)
.|-..+.+.+-......|..++|||.+.+. . ++..-.+.. +..++...
T Consensus 246 GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV-~---------------------------~l~~~~L~~d~~~v~~~d--- 294 (543)
T KOG0342|consen 246 GFEEDVEQIIKILPKQRQTLLFSATQPSKV-K---------------------------DLARGALKRDPVFVNVDD--- 294 (543)
T ss_pred ccHHHHHHHHHhccccceeeEeeCCCcHHH-H---------------------------HHHHHhhcCCceEeecCC---
Confidence 666666555544556788999999997651 1 111111111 00000000
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcC-CCcEEEEeCCHH
Q 000991 510 SWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKER-PGAVLVFMTGWD 588 (1197)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~-~g~iLVFl~~~~ 588 (1197)
.....+.+.+++. | ...+..-.+. ++..++++.. ..+|+|||+|..
T Consensus 295 ------------~~~~~The~l~Qg--------y---------vv~~~~~~f~----ll~~~LKk~~~~~KiiVF~sT~~ 341 (543)
T KOG0342|consen 295 ------------GGERETHERLEQG--------Y---------VVAPSDSRFS----LLYTFLKKNIKRYKIIVFFSTCM 341 (543)
T ss_pred ------------CCCcchhhcccce--------E---------EeccccchHH----HHHHHHHHhcCCceEEEEechhh
Confidence 0000000111110 0 0111111122 2333333333 389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCccccc
Q 000991 589 DINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYD 668 (1197)
Q Consensus 589 ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD 668 (1197)
.+..+++.|... ++.|..+||++++..|..++..|++.+.-||||||++++|+|+|+|++||.+|.|.
T Consensus 342 ~vk~~~~lL~~~-------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~----- 409 (543)
T KOG0342|consen 342 SVKFHAELLNYI-------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPS----- 409 (543)
T ss_pred HHHHHHHHHhhc-------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCC-----
Confidence 999999999965 67799999999999999999999999999999999999999999999999966665
Q ss_pred CCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccc
Q 000991 669 ALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1197)
Q Consensus 669 ~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~ 707 (1197)
...+|+||.||+||.| .|..+.+..+
T Consensus 410 -------------d~~~YIHRvGRTaR~gk~G~alL~l~p 436 (543)
T KOG0342|consen 410 -------------DPEQYIHRVGRTAREGKEGKALLLLAP 436 (543)
T ss_pred -------------CHHHHHHHhccccccCCCceEEEEeCh
Confidence 5668889999999985 6998887654
No 38
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-33 Score=293.53 Aligned_cols=330 Identities=19% Similarity=0.246 Sum_probs=235.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
.+..+-..-|...||.+|... .++++||+.+..|+|||..+..-++..+-- ......++|+.|||+||.|+.+.+..
T Consensus 41 giY~yGfekPS~IQqrAi~~I-lkGrdViaQaqSGTGKTa~~si~vlq~~d~--~~r~tQ~lilsPTRELa~Qi~~vi~a 117 (400)
T KOG0328|consen 41 GIYAYGFEKPSAIQQRAIPQI-LKGRDVIAQAQSGTGKTATFSISVLQSLDI--SVRETQALILSPTRELAVQIQKVILA 117 (400)
T ss_pred HHHHhccCCchHHHhhhhhhh-hcccceEEEecCCCCceEEEEeeeeeeccc--ccceeeEEEecChHHHHHHHHHHHHH
Confidence 455555667888887777664 589999999999999997777666654422 12346788888999999999887754
Q ss_pred H---hCCcccceeeeEeeec--cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcc
Q 000991 369 E---RGEKLGESVGYKVRLE--GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1197)
Q Consensus 369 e---~g~~lg~~VGy~ir~e--~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~ 442 (1197)
. ++..+...+|-..-.+ .....+.+++.+|||++++++.... .-+++..+|+||++|. ++-.|-..+.+.+..
T Consensus 118 lg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem-L~kgfk~Qiydiyr~ 196 (400)
T KOG0328|consen 118 LGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM-LNKGFKEQIYDIYRY 196 (400)
T ss_pred hcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH-HHhhHHHHHHHHHHh
Confidence 3 2333333333111111 1223568999999999999998765 5678999999999984 444454455554445
Q ss_pred cCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHh
Q 000991 443 RRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1197)
Q Consensus 443 ~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~ 522 (1197)
..|+.|++++|||++.+ +++++...++.+..+-. +
T Consensus 197 lp~~~Qvv~~SATlp~e----------------------------ilemt~kfmtdpvrilv-----------------k 231 (400)
T KOG0328|consen 197 LPPGAQVVLVSATLPHE----------------------------ILEMTEKFMTDPVRILV-----------------K 231 (400)
T ss_pred CCCCceEEEEeccCcHH----------------------------HHHHHHHhcCCceeEEE-----------------e
Confidence 66799999999999876 33333333333222110 0
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC
Q 000991 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1197)
Q Consensus 523 ~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~ 602 (1197)
+.+...+-+++.+..++ .-+...+.++.+.....-...+|||+++..+..|.+.++..
T Consensus 232 rdeltlEgIKqf~v~ve--------------------~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~-- 289 (400)
T KOG0328|consen 232 RDELTLEGIKQFFVAVE--------------------KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA-- 289 (400)
T ss_pred cCCCchhhhhhheeeec--------------------hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh--
Confidence 11111112222222111 11234455777766666678999999999999999999986
Q ss_pred CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 603 ~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
.+.+..+||+|+++||.++...|+.|+-+|+++|++-++|||+|.|.+|||+++|. .
T Consensus 290 -----nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~------------------n 346 (400)
T KOG0328|consen 290 -----NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN------------------N 346 (400)
T ss_pred -----CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc------------------c
Confidence 67899999999999999999999999999999999999999999999999955553 4
Q ss_pred HhhHHhhhcccCCCC-CCeEEEeccccchhh
Q 000991 683 KAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 683 kas~~QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
+..|.||+||.||.| .|+++.+...++...
T Consensus 347 re~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 347 RELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred HHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 457779999999995 799999988766544
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.6e-32 Score=346.97 Aligned_cols=327 Identities=23% Similarity=0.242 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc----CCceEEEecchHHHHHHHHHHHHHH------
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR----GAACSIICTQPRRISAMAVSERVAA------ 368 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~----g~~~~IivtqPrR~LA~qva~rVa~------ 368 (1197)
.+..|.++++.+.++++++|+||||||||+++.+++++.+..... ...+.++++.|+|+||.|+.+++..
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788999999999999999999999999998875321 2346788888999999999876542
Q ss_pred ----HhCCcc-cceeeeEeeecc------ccCCCceEEEEcchHHHHHHhcCC---CCCCccEEEEecCCCC-----CCC
Q 000991 369 ----ERGEKL-GESVGYKVRLEG------MKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHER-----GMN 429 (1197)
Q Consensus 369 ----e~g~~l-g~~VGy~ir~e~------~~~~~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaHeR-----~~~ 429 (1197)
..|..+ +..++....... .....++|+|+||+.|..++.+.. .+.++++|||||||+. |..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~ 192 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVH 192 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHH
Confidence 123333 222221111100 112357999999999976664432 5789999999999963 222
Q ss_pred hhHHHHHHHHHcccCccceEEEecccC-CHHHHHhhhCCCCccccCCcccceee---eehHhHHHHhhhccCcccccccc
Q 000991 430 EDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRA---YFLENILEMTRYRLNTYNQIDDY 505 (1197)
Q Consensus 430 ~D~Ll~lLr~ll~~r~~lklIlmSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~---~yledi~~l~~~~l~~~~~i~~~ 505 (1197)
....+..++.+. .++.++|++|||+ +.+.+++|+.+.... +..-|+.. .+.... ++ ....+.......
T Consensus 193 l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~~~~~---~~~r~~~iv~~~~~k~~-~i--~v~~p~~~l~~~ 264 (876)
T PRK13767 193 LSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVGYEDD---GEPRDCEIVDARFVKPF-DI--KVISPVDDLIHT 264 (876)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcCcccc---CCCCceEEEccCCCccc-eE--EEeccCcccccc
Confidence 233333344333 2578999999999 678888988753211 00111111 000000 00 000000000000
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeC
Q 000991 506 GQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMT 585 (1197)
Q Consensus 506 ~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~ 585 (1197)
..... ...+...+..+++ ..+++||||+
T Consensus 265 -------------------------------------------------~~~~~-~~~l~~~L~~~i~--~~~~~LVF~n 292 (876)
T PRK13767 265 -------------------------------------------------PAEEI-SEALYETLHELIK--EHRTTLIFTN 292 (876)
T ss_pred -------------------------------------------------ccchh-HHHHHHHHHHHHh--cCCCEEEEeC
Confidence 00000 0011122333333 2468999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcc
Q 000991 586 GWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKET 665 (1197)
Q Consensus 586 ~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~ 665 (1197)
++..++.++..|...... ......+..|||+|+.++|..+++.|++|.++|||||+++|+|||||+|++||+.|.|+
T Consensus 293 Tr~~ae~la~~L~~~~~~-~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~-- 369 (876)
T PRK13767 293 TRSGAERVLYNLRKRFPE-EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK-- 369 (876)
T ss_pred CHHHHHHHHHHHHHhchh-hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC--
Confidence 999999999999863110 01235689999999999999999999999999999999999999999999999977775
Q ss_pred cccCCCCCCCccccccCHhhHHhhhcccCCCC----CCeEEEe
Q 000991 666 SYDALNNTPCLLPSWISKAAARQRRGRAGRVQ----PGECYHL 704 (1197)
Q Consensus 666 ~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~----~G~cy~L 704 (1197)
|.++|.||+|||||.. .|.++.+
T Consensus 370 ----------------sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 370 ----------------SVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred ----------------CHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 7789999999999872 3666654
No 40
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=309.03 Aligned_cols=326 Identities=17% Similarity=0.206 Sum_probs=230.0
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc--CCceEEEecchHHHHHHHHHHHHHH---HhC
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR--GAACSIICTQPRRISAMAVSERVAA---ERG 371 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~--g~~~~IivtqPrR~LA~qva~rVa~---e~g 371 (1197)
.-....|...+.....|++|+-.|-||||||+++..++|+.++..+. ..+.-.+++.|||+||.|+.+.+.+ ..+
T Consensus 90 v~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred ccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccc
Confidence 34444555555556689999999999999999999999999986542 2223345555999999999876643 233
Q ss_pred Ccccceee-eEeeeccccCCCceEEEEcchHHHHHHhcCCC--CCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 372 EKLGESVG-YKVRLEGMKGRDTRLMFCTTGILLRRLLVDRS--LRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 372 ~~lg~~VG-y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~--L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
...|..+| -.+.++...-.+.+|+|||||+||++|...+. -.++.++|+|||+ |-+++.|--.+=..+-...+..|
T Consensus 170 fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~RQ 248 (758)
T KOG0343|consen 170 FSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKRQ 248 (758)
T ss_pred cccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhhe
Confidence 44454444 23344444446789999999999999998884 5689999999999 66777765554444444556788
Q ss_pred EEEecccC--CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhh
Q 000991 449 LILMSATL--NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSS 526 (1197)
Q Consensus 449 lIlmSATl--~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~ 526 (1197)
.+++|||. +..++++.- +..+..+..+... ...
T Consensus 249 TLLFSATqt~svkdLaRLs------------------------------L~dP~~vsvhe~a---------------~~a 283 (758)
T KOG0343|consen 249 TLLFSATQTKSVKDLARLS------------------------------LKDPVYVSVHENA---------------VAA 283 (758)
T ss_pred eeeeecccchhHHHHHHhh------------------------------cCCCcEEEEeccc---------------ccc
Confidence 99999997 344444432 1111111100000 000
Q ss_pred hHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCC
Q 000991 527 IASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDP 606 (1197)
Q Consensus 527 ~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~ 606 (1197)
+.+.+.+.+. .+......++|...++.....++|||+.+..++..+++.++.. .
T Consensus 284 tP~~L~Q~y~---------------------~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-----r 337 (758)
T KOG0343|consen 284 TPSNLQQSYV---------------------IVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-----R 337 (758)
T ss_pred ChhhhhheEE---------------------EEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-----C
Confidence 0011111100 0112223345555667777889999999999999999999876 3
Q ss_pred CceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhH
Q 000991 607 SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAA 686 (1197)
Q Consensus 607 ~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~ 686 (1197)
+++.+..|||.|++..|..++..|-..+--|++||+++++|+|+|.|++||..+.| . ....|
T Consensus 338 pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCP--------e----------dv~tY 399 (758)
T KOG0343|consen 338 PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCP--------E----------DVDTY 399 (758)
T ss_pred CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCc--------h----------hHHHH
Confidence 47789999999999999999999998888999999999999999999999994444 3 45577
Q ss_pred HhhhcccCCCC-CCeEEEeccccchhh
Q 000991 687 RQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 687 ~QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
+||+||+.|.. .|.|+.+.+....+.
T Consensus 400 IHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 400 IHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred HHHhhhhhcccCCCceEEEEcchhHHH
Confidence 79999999995 699999887765443
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.8e-32 Score=335.08 Aligned_cols=305 Identities=19% Similarity=0.265 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
...|+++++++.+++++++++|||||||+++.++++.. + ..++|+.|+++|+.|..+.+.. .|.......+
T Consensus 27 r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~--g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s 97 (607)
T PRK11057 27 RPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------D--GLTLVVSPLISLMKDQVDQLLA-NGVAAACLNS 97 (607)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------C--CCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcC
Confidence 35788899999999999999999999999888777631 1 2466667999999998887754 3433221111
Q ss_pred eEee------eccccCCCceEEEEcchHHHHH-HhcCCCCCCccEEEEecCCCCCCC-hhHH--HHHHHHHcccCccceE
Q 000991 380 YKVR------LEGMKGRDTRLMFCTTGILLRR-LLVDRSLRGVTHVIVDEIHERGMN-EDFL--LIVLKELLPRRPELRL 449 (1197)
Q Consensus 380 y~ir------~e~~~~~~t~Ilv~Tpg~LLr~-L~~d~~L~~is~VIIDEaHeR~~~-~D~L--l~lLr~ll~~r~~lkl 449 (1197)
-..+ .........+|+|+||+.|+.. +.......++++|||||||+..-. .+|. ...+..+....|+.++
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~ 177 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcE
Confidence 1000 1112234578999999998742 222223457899999999974321 1222 2233444445678899
Q ss_pred EEecccCCHHH---HHhhhC-CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhh
Q 000991 450 ILMSATLNAEL---FSSYFG-GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1197)
Q Consensus 450 IlmSATl~~~~---f~~yf~-~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1197)
++||||++... +...++ ..|.+.+.+..-|.- .|. . .
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl-~~~----------v-----~----------------------- 218 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI-RYT----------L-----V----------------------- 218 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc-eee----------e-----e-----------------------
Confidence 99999997543 223222 122222211111100 000 0 0
Q ss_pred hhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCC
Q 000991 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1197)
Q Consensus 526 ~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 605 (1197)
.. ...+..++ ..+.....+++||||+++++++.+++.|...
T Consensus 219 ------------------------------~~---~~~~~~l~-~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~----- 259 (607)
T PRK11057 219 ------------------------------EK---FKPLDQLM-RYVQEQRGKSGIIYCNSRAKVEDTAARLQSR----- 259 (607)
T ss_pred ------------------------------ec---cchHHHHH-HHHHhcCCCCEEEEECcHHHHHHHHHHHHhC-----
Confidence 00 00011122 2223345678999999999999999999876
Q ss_pred CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhh
Q 000991 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1197)
Q Consensus 606 ~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas 685 (1197)
++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+++.|+ |..+
T Consensus 260 --g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------------------s~~~ 319 (607)
T PRK11057 260 --GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------------------NIES 319 (607)
T ss_pred --CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC------------------CHHH
Confidence 56799999999999999999999999999999999999999999999999977776 7789
Q ss_pred HHhhhcccCCCC-CCeEEEeccccchh
Q 000991 686 ARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 686 ~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
|.||+|||||.| +|.|+.+|+..+..
T Consensus 320 y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 320 YYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred HHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 999999999996 69999999876654
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.6e-32 Score=336.49 Aligned_cols=308 Identities=19% Similarity=0.163 Sum_probs=207.7
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccccee
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV 378 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~V 378 (1197)
....|.+++.++..++++++++|||+|||+++.++++.. + +.+||+.|+++|+.+....+.. .|.......
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~--GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~ 531 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------P--GITLVISPLVSLIQDQIMNLLQ-ANIPAASLS 531 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------C--CcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEE
Confidence 456789999999999999999999999999999888742 1 3567777999999854444432 233222222
Q ss_pred eeEeee------ccc--cCCCceEEEEcchHHHH------HHhcCCCCCCccEEEEecCCCCC-CChhHHHHH--HHHHc
Q 000991 379 GYKVRL------EGM--KGRDTRLMFCTTGILLR------RLLVDRSLRGVTHVIVDEIHERG-MNEDFLLIV--LKELL 441 (1197)
Q Consensus 379 Gy~ir~------e~~--~~~~t~Ilv~Tpg~LLr------~L~~d~~L~~is~VIIDEaHeR~-~~~D~Ll~l--Lr~ll 441 (1197)
|..... ... .....+|+|+||++|.. .+..-.....+++|||||||+.. +..||-..+ +..+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 211000 001 11457999999998752 22211134558999999999742 122333222 22333
Q ss_pred ccCccceEEEecccCCHH---HHHhhhCCCC-ccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 442 PRRPELRLILMSATLNAE---LFSSYFGGAP-MLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 442 ~~r~~lklIlmSATl~~~---~f~~yf~~~p-vi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
...|+.+++++|||++.. .+.+.++... ++...++.-| ..+|. ..+
T Consensus 612 ~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~----------Vv~------------------- 661 (1195)
T PLN03137 612 QKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYS----------VVP------------------- 661 (1195)
T ss_pred HhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEE----------Eec-------------------
Confidence 455778899999999654 3444443211 1111111111 01110 000
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHH
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L 597 (1197)
+ . ...+..+...+......+..||||.++.+++.+++.|
T Consensus 662 ----k-~------------------------------------kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L 700 (1195)
T PLN03137 662 ----K-T------------------------------------KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERL 700 (1195)
T ss_pred ----c-c------------------------------------hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHH
Confidence 0 0 0000111222222233567899999999999999999
Q ss_pred HcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcc
Q 000991 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1197)
Q Consensus 598 ~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~ 677 (1197)
... ++.+.++||+|++++|..+++.|..|+.+|||||+++++|||+|+|++||++++|+
T Consensus 701 ~~~-------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk-------------- 759 (1195)
T PLN03137 701 QEF-------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK-------------- 759 (1195)
T ss_pred HHC-------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC--------------
Confidence 876 67799999999999999999999999999999999999999999999999988887
Q ss_pred ccccCHhhHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 678 PSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 678 ~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
|..+|.||+|||||.| +|.|+.+|+..++.
T Consensus 760 ----SiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 760 ----SIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ----CHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 7789999999999996 79999999876654
No 43
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.2e-31 Score=292.56 Aligned_cols=316 Identities=21% Similarity=0.319 Sum_probs=222.6
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc----e
Q 000991 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE----S 377 (1197)
Q Consensus 302 ~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~----~ 377 (1197)
.|...+..|.+|+++|-+|.||||||+++.++|++.+.+...|-. .+|+.|||+||.|+++++.. +|...+. .
T Consensus 33 iQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giF--alvlTPTrELA~QiaEQF~a-lGk~l~lK~~vi 109 (442)
T KOG0340|consen 33 IQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIF--ALVLTPTRELALQIAEQFIA-LGKLLNLKVSVI 109 (442)
T ss_pred hHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcce--EEEecchHHHHHHHHHHHHH-hcccccceEEEE
Confidence 356777788899999999999999999999999999876544433 44555999999999999854 3433333 3
Q ss_pred ee--eEeeeccccCCCceEEEEcchHHHHHHhcCC-----CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCc-cceE
Q 000991 378 VG--YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-----SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP-ELRL 449 (1197)
Q Consensus 378 VG--y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-----~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~-~lkl 449 (1197)
|| -.+......+.+++++++|||.|...+.+++ .++++.++|+|||+ |-+..+|-.. |+.+...-| ..+.
T Consensus 110 vGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~-L~~i~e~lP~~RQt 187 (442)
T KOG0340|consen 110 VGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDI-LEGIEECLPKPRQT 187 (442)
T ss_pred EccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhH-HhhhhccCCCccce
Confidence 34 1222333456789999999999999998874 57899999999999 5455544333 333333333 3589
Q ss_pred EEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHH
Q 000991 450 ILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIAS 529 (1197)
Q Consensus 450 IlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~ 529 (1197)
+++|||++.. +...|+ +|+-.- ..| +++. ++. ..+.+
T Consensus 188 LlfSATitd~-i~ql~~-~~i~k~--~a~-----~~e~--------------~~~--------------------vstve 224 (442)
T KOG0340|consen 188 LLFSATITDT-IKQLFG-CPITKS--IAF-----ELEV--------------IDG--------------------VSTVE 224 (442)
T ss_pred EEEEeehhhH-HHHhhc-CCcccc--cce-----EEec--------------cCC--------------------CCchh
Confidence 9999999543 233332 222110 001 0000 000 00000
Q ss_pred HHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhh---cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCC
Q 000991 530 AVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK---ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDP 606 (1197)
Q Consensus 530 ~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~---~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~ 606 (1197)
.+.+... .++.+.+...+.++++. ++.+.++||+++..+++.++..|+..
T Consensus 225 tL~q~yI---------------------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l------ 277 (442)
T KOG0340|consen 225 TLYQGYI---------------------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL------ 277 (442)
T ss_pred hhhhhee---------------------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh------
Confidence 0000000 00111222334444433 35789999999999999999999987
Q ss_pred CceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhH
Q 000991 607 SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAA 686 (1197)
Q Consensus 607 ~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~ 686 (1197)
.+.+..+||.|++.+|-..+.+|+.+..+|||||++|.+|+|||.|..|||.+.|+ ....|
T Consensus 278 -e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr------------------~P~~y 338 (442)
T KOG0340|consen 278 -EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPR------------------DPKDY 338 (442)
T ss_pred -ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCC------------------CHHHH
Confidence 77899999999999999999999999999999999999999999999999977776 44578
Q ss_pred HhhhcccCCCC-CCeEEEeccccchh
Q 000991 687 RQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 687 ~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
+||.||+.|.| .|..+.+++..+-+
T Consensus 339 iHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 339 IHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred HHhhcchhcccCCcceEEEechhhHH
Confidence 89999999996 59999999865543
No 44
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.6e-31 Score=298.95 Aligned_cols=373 Identities=21% Similarity=0.256 Sum_probs=235.9
Q ss_pred HhcChhhHHHHHHhhc--CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc----cCCceEEEecch
Q 000991 281 WQESPEGQKMLEFRRS--LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA----RGAACSIICTQP 354 (1197)
Q Consensus 281 ~~~s~~~~~~~~~R~~--LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~----~g~~~~IivtqP 354 (1197)
+.-.+++..-++.+.. -|...|++. +..|.++++++|-++||||||+++.++|.+.+.... +..+...+|++|
T Consensus 141 LGL~~~lv~~L~~~m~i~~pTsVQkq~-IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivP 219 (708)
T KOG0348|consen 141 LGLHPHLVSHLNTKMKISAPTSVQKQA-IPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVP 219 (708)
T ss_pred cCCCHHHHHHHHHHhccCccchHhhcc-hhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEec
Confidence 3445555555554444 355555555 555667999999999999999999999999886321 334455666669
Q ss_pred HHHHHHHHHHHHHHHhCCcccceeeeEeeeccccC------CCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCC--
Q 000991 355 RRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG------RDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIH-- 424 (1197)
Q Consensus 355 rR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~------~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaH-- 424 (1197)
||+||.|+++.+.+......-..-|+-+..|...+ .+.+|+|+|||+|+++|.+-. .++.+.+||+||++
T Consensus 220 TREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrl 299 (708)
T KOG0348|consen 220 TRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRL 299 (708)
T ss_pred hHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHH
Confidence 99999999999987765432233355566666655 467899999999999999876 57889999999999
Q ss_pred -CCCCChhHHHHHHHHH---cc-cC------ccceEEEecccCCHH--HHHhhhCCCCccccCCcccceeeeehHhHHHH
Q 000991 425 -ERGMNEDFLLIVLKEL---LP-RR------PELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEM 491 (1197)
Q Consensus 425 -eR~~~~D~Ll~lLr~l---l~-~r------~~lklIlmSATl~~~--~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l 491 (1197)
|.|.+-|+ -.+++.+ .. .. +..+-+++|||++.. .+++.
T Consensus 300 leLGfekdi-t~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~--------------------------- 351 (708)
T KOG0348|consen 300 LELGFEKDI-TQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL--------------------------- 351 (708)
T ss_pred HhccchhhH-HHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc---------------------------
Confidence 34444442 2222222 11 11 236779999999543 33321
Q ss_pred hhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHh---hhhcch--hhhhhhccccCCCCCCchhhHHH
Q 000991 492 TRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEA---ADFREY--SVQTQQSLSCWNPDSIGFNLIEH 566 (1197)
Q Consensus 492 ~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~---~~~~~~--~~~~~~~l~~~~~~~i~~~li~~ 566 (1197)
.+.++..+. .... ..+.. .....+++.... .....+ ..+..+. ...-|....+--+..
T Consensus 352 ---sLkDpv~I~-ld~s-----~~~~~-------p~~~a~~ev~~~~~~~~l~~~~iPeqL~qr-y~vVPpKLRLV~Laa 414 (708)
T KOG0348|consen 352 ---SLKDPVYIS-LDKS-----HSQLN-------PKDKAVQEVDDGPAGDKLDSFAIPEQLLQR-YTVVPPKLRLVALAA 414 (708)
T ss_pred ---cccCceeee-ccch-----hhhcC-------cchhhhhhcCCcccccccccccCcHHhhhc-eEecCCchhHHHHHH
Confidence 122111111 0000 00000 000000000000 000000 0000000 001122222333456
Q ss_pred HHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCC------CC---------CCceEEEeccCCCCHHHHHHhcCCCC
Q 000991 567 VLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLL------GD---------PSRVLLLACHGSMASSEQRLIFDKPE 631 (1197)
Q Consensus 567 ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~------~~---------~~~~~I~~lHs~L~~~er~~v~~~f~ 631 (1197)
+|..+++.....+++||+.+.+.++.-++++...... +. ..+..++-|||+|++++|..+|+.|.
T Consensus 415 ~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs 494 (708)
T KOG0348|consen 415 LLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFS 494 (708)
T ss_pred HHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhc
Confidence 6777777777889999999999999888887642111 00 12567899999999999999999999
Q ss_pred CCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecc--cc
Q 000991 632 DGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP--RY 708 (1197)
Q Consensus 632 ~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys--~~ 708 (1197)
....-|++||++|++|+|+|+|.+||. ||++. |.++|.||+||+.|.| .|....+.. +.
T Consensus 495 ~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~----------s~adylHRvGRTARaG~kG~alLfL~P~Ea 556 (708)
T KOG0348|consen 495 HSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPF----------STADYLHRVGRTARAGEKGEALLFLLPSEA 556 (708)
T ss_pred cccceEEEehhhhhccCCCCCcCeEEE--------eCCCC----------CHHHHHHHhhhhhhccCCCceEEEecccHH
Confidence 999999999999999999999999999 55543 7789999999999996 477655533 33
Q ss_pred chhhhhhcC
Q 000991 709 VYDAFADYQ 717 (1197)
Q Consensus 709 ~~~~l~~~~ 717 (1197)
.|-+.....
T Consensus 557 ey~~~l~~~ 565 (708)
T KOG0348|consen 557 EYVNYLKKH 565 (708)
T ss_pred HHHHHHHhh
Confidence 454433333
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=3e-30 Score=317.69 Aligned_cols=386 Identities=21% Similarity=0.225 Sum_probs=264.5
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc---CCceEEEecchHHHHHHHH
Q 000991 286 EGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR---GAACSIICTQPRRISAMAV 362 (1197)
Q Consensus 286 ~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~---g~~~~IivtqPrR~LA~qv 362 (1197)
..++.+..+..-|... |..++..|.+|++++|+||||||||.++.+++++.+...+. .....++|+.|-|+|+..+
T Consensus 11 ~v~~~~~~~~~~~t~~-Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di 89 (814)
T COG1201 11 RVREWFKRKFTSLTPP-QRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDI 89 (814)
T ss_pred HHHHHHHHhcCCCCHH-HHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHH
Confidence 3444455554555554 56666777899999999999999999999999999987632 2347899999999999999
Q ss_pred HHHHHH---HhCCcccceeeeEeeecc--ccCCCceEEEEcchHHHHHHhcCC---CCCCccEEEEecCCC-----CCCC
Q 000991 363 SERVAA---ERGEKLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHE-----RGMN 429 (1197)
Q Consensus 363 a~rVa~---e~g~~lg~~VGy~ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaHe-----R~~~ 429 (1197)
-.++.. ++|..+....|...+.+. .....++|+++||+.|.-+|.+.. .|.++.+|||||+|+ ||..
T Consensus 90 ~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~ 169 (814)
T COG1201 90 RRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQ 169 (814)
T ss_pred HHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchh
Confidence 888743 345554333343322222 123458999999999987776544 799999999999994 7777
Q ss_pred hhHHHHHHHHHcccCccceEEEecccC-CHHHHHhhhCCC----CccccCCc-ccceeeeehHhHHHHhhhccCcccccc
Q 000991 430 EDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFGGA----PMLHIPGF-TYPVRAYFLENILEMTRYRLNTYNQID 503 (1197)
Q Consensus 430 ~D~Ll~lLr~ll~~r~~lklIlmSATl-~~~~f~~yf~~~----pvi~i~gr-~~PV~~~yledi~~l~~~~l~~~~~i~ 503 (1197)
--..+..|+.+.. ++|.|++|||+ +.+..++|+.+. .++.+.+. .+.+++.....- ..
T Consensus 170 Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~-------------~~ 233 (814)
T COG1201 170 LALSLERLRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVED-------------LI 233 (814)
T ss_pred hhhhHHHHHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCc-------------cc
Confidence 6666666666554 88999999999 899999999754 23333322 222332221110 00
Q ss_pred cchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEE
Q 000991 504 DYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVF 583 (1197)
Q Consensus 504 ~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVF 583 (1197)
.. + .........+..+.++. ..+|||
T Consensus 234 ~~--~--------------------------------------------------~~~~~~~~~i~~~v~~~--~ttLIF 259 (814)
T COG1201 234 YD--E--------------------------------------------------ELWAALYERIAELVKKH--RTTLIF 259 (814)
T ss_pred cc--c--------------------------------------------------chhHHHHHHHHHHHhhc--CcEEEE
Confidence 00 0 00011112344444443 489999
Q ss_pred eCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCC
Q 000991 584 MTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1197)
Q Consensus 584 l~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k 663 (1197)
+||+..++.++..|.... ...+..|||+++.++|..+++++++|..++||||+.+|-||||.+|+.||+.+-|+
T Consensus 260 ~NTR~~aE~l~~~L~~~~------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~ 333 (814)
T COG1201 260 TNTRSGAERLAFRLKKLG------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPK 333 (814)
T ss_pred EeChHHHHHHHHHHHHhc------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcH
Confidence 999999999999998762 15689999999999999999999999999999999999999999999999988777
Q ss_pred cccccCCCCCCCccccccCHhhHHhhhcccCCCCCC-eEEEeccccchhhhh-----------hcCCccccccchhhhhH
Q 000991 664 ETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPG-ECYHLYPRYVYDAFA-----------DYQLPELLRTPLQSLCL 731 (1197)
Q Consensus 664 ~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G-~cy~Lys~~~~~~l~-----------~~~~PEIlr~~L~~l~L 731 (1197)
|.+.+.||+||+|+.-.+ .-..+|+.++++-+. ....+++-..+|+-++=
T Consensus 334 ------------------sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq 395 (814)
T COG1201 334 ------------------SVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQ 395 (814)
T ss_pred ------------------HHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHH
Confidence 777888999999987321 112233333332211 22356677777776665
Q ss_pred HhhhcC------CCCHHHHHhhhc--CCCChhhHHHHHHHHHH
Q 000991 732 QIKSLQ------LGSISEFLSRAL--QPPEPLSVKNAIEYLQI 766 (1197)
Q Consensus 732 ~lk~l~------~~~i~~fL~~~l--dpP~~~~v~~Al~~L~~ 766 (1197)
++-.+- ++.+.+++.++- .--+.+.....+++|..
T Consensus 396 ~ivg~~~~~~~~~~~~y~~vrraypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 396 QIVGMALEKVWEVEEAYRVVRRAYPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHhhCcCCHHHHHHHHHhccccccCCHHHHHHHHHHHhh
Confidence 554432 223344433321 11234566777888877
No 46
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=6.7e-31 Score=341.45 Aligned_cols=318 Identities=25% Similarity=0.338 Sum_probs=206.4
Q ss_pred EEecCCChHHHHHHHHHHHHHHHHc--------cCCceEEEecchHHHHHHHHHHHHHHH----------hCC-ccccee
Q 000991 318 VSGETGCGKTTQLPQYILESETEAA--------RGAACSIICTQPRRISAMAVSERVAAE----------RGE-KLGESV 378 (1197)
Q Consensus 318 I~apTGSGKTtq~pq~ILe~~~~~~--------~g~~~~IivtqPrR~LA~qva~rVa~e----------~g~-~lg~~V 378 (1197)
|++|||||||+++.+++++.++... ....+++||+.|+|+|+.|+.+++... +|. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987542 123578999999999999999887541 111 123334
Q ss_pred eeEeee----cc--ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCC-----CCCChhHHHHHHHHHcccCc
Q 000991 379 GYKVRL----EG--MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHE-----RGMNEDFLLIVLKELLPRRP 445 (1197)
Q Consensus 379 Gy~ir~----e~--~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHe-----R~~~~D~Ll~lLr~ll~~r~ 445 (1197)
+..... +. .....++|+|+||+.|..+|.+.. .++++++|||||+|+ ||......+..|+.++. .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~--~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH--T 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC--C
Confidence 421111 11 122467999999999988776542 689999999999995 44444445555555543 4
Q ss_pred cceEEEecccC-CHHHHHhhhCCC-Ccccc-C--Ccccceeeeeh-HhHHHHhhhccCcccccccchhhhhHHHHHHHHH
Q 000991 446 ELRLILMSATL-NAELFSSYFGGA-PMLHI-P--GFTYPVRAYFL-ENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1197)
Q Consensus 446 ~lklIlmSATl-~~~~f~~yf~~~-pvi~i-~--gr~~PV~~~yl-edi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~ 519 (1197)
+.|+|++|||+ |.+.+++|+++. ++..+ + .+..+++.... ++..+.. .. ....+.. ..
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~---~~----~~~~~~~--------~~- 222 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVS---SV----ASGTGED--------SH- 222 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhcc---cc----ccccccc--------cc-
Confidence 68999999999 888999999764 32222 1 12223332211 1100000 00 0000000 00
Q ss_pred HHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHc
Q 000991 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1197)
Q Consensus 520 ~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~ 599 (1197)
.... ..+.......++..+. ...++|||++++..++.++..|..
T Consensus 223 -~~r~--------------------------------~~i~~~v~~~il~~i~---~~~stLVFvNSR~~AE~La~~L~~ 266 (1490)
T PRK09751 223 -AGRE--------------------------------GSIWPYIETGILDEVL---RHRSTIVFTNSRGLAEKLTARLNE 266 (1490)
T ss_pred -hhhh--------------------------------hhhhHHHHHHHHHHHh---cCCCEEEECCCHHHHHHHHHHHHH
Confidence 0000 0000000011222221 347899999999999999999875
Q ss_pred CCCC-------------------C-------CCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCE
Q 000991 600 HPLL-------------------G-------DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDV 653 (1197)
Q Consensus 600 ~~~~-------------------~-------~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV 653 (1197)
.... + ....+.+..|||+|+.++|..+++.|++|+++|||||+++|.||||++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~V 346 (1490)
T PRK09751 267 LYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAV 346 (1490)
T ss_pred hhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccC
Confidence 3100 0 0012347789999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCC--eEEEecccc
Q 000991 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPG--ECYHLYPRY 708 (1197)
Q Consensus 654 ~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G--~cy~Lys~~ 708 (1197)
++||+.|.|+ |.++|.||+|||||...| .++ +|+..
T Consensus 347 DlVIq~gsP~------------------sVas~LQRiGRAGR~~gg~s~gl-i~p~~ 384 (1490)
T PRK09751 347 DLVIQVATPL------------------SVASGLQRIGRAGHQVGGVSKGL-FFPRT 384 (1490)
T ss_pred CEEEEeCCCC------------------CHHHHHHHhCCCCCCCCCccEEE-EEeCc
Confidence 9999977765 888999999999998443 444 44443
No 47
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4e-31 Score=305.01 Aligned_cols=312 Identities=20% Similarity=0.229 Sum_probs=215.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc--------CCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR--------GAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~--------g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
|+-.+..|..|+++++||+||||||.++.+++++.++..+. +....+++++|||+||.|++++..+..+...
T Consensus 101 Qk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~ 180 (482)
T KOG0335|consen 101 QKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSG 180 (482)
T ss_pred eeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccc
Confidence 44455668899999999999999999999999999986532 1235667777999999999999988765443
Q ss_pred cce-eeeEeeec----cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCC-hhHHHHHHHHHccc----
Q 000991 375 GES-VGYKVRLE----GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMN-EDFLLIVLKELLPR---- 443 (1197)
Q Consensus 375 g~~-VGy~ir~e----~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~-~D~Ll~lLr~ll~~---- 443 (1197)
-.. ++|.-+.. ....+.++|+|||||.|.+.+.... .|+++.++|+||++ |.++ ..|.-.+=+.+...
T Consensus 181 ~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~~~ 259 (482)
T KOG0335|consen 181 MKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLGMPP 259 (482)
T ss_pred ceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcccCCCC
Confidence 222 33433211 1233679999999999999988776 79999999999999 4355 55544433333221
Q ss_pred CccceEEEecccCCHH--HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 444 RPELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 444 r~~lklIlmSATl~~~--~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
....+.+++|||.+.+ .+..+|-... |.+.. +...+..
T Consensus 260 ~~~~qt~mFSAtfp~~iq~l~~~fl~~~------------------------yi~la---V~rvg~~------------- 299 (482)
T KOG0335|consen 260 KNNRQTLLFSATFPKEIQRLAADFLKDN------------------------YIFLA---VGRVGST------------- 299 (482)
T ss_pred ccceeEEEEeccCChhhhhhHHHHhhcc------------------------ceEEE---Eeeeccc-------------
Confidence 2467899999998543 3444442110 00000 0000000
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhc---CCC-----cEEEEeCCHHHHHHH
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKE---RPG-----AVLVFMTGWDDINSL 593 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~---~~g-----~iLVFl~~~~ei~~l 593 (1197)
...+.+.+ ....+.+.+..++..+.... ..+ .++|||.+++.+..+
T Consensus 300 ------~~ni~q~i--------------------~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l 353 (482)
T KOG0335|consen 300 ------SENITQKI--------------------LFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADEL 353 (482)
T ss_pred ------cccceeEe--------------------eeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHH
Confidence 00000000 00001111222222222111 233 899999999999999
Q ss_pred HHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCC
Q 000991 594 KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNT 673 (1197)
Q Consensus 594 ~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~ 673 (1197)
+..|... ++....+||..++.+|.+.+..|+.|...|+|||||+++|+|||+|++||+ ||.+...
T Consensus 354 ~~~l~~~-------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yDmP~d~ 418 (482)
T KOG0335|consen 354 AAFLSSN-------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YDMPADI 418 (482)
T ss_pred HHHHhcC-------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------eecCcch
Confidence 9999986 667889999999999999999999999999999999999999999999999 5544444
Q ss_pred CCccccccCHhhHHhhhcccCCCC-CCeEEEecc
Q 000991 674 PCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1197)
Q Consensus 674 ~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys 706 (1197)
. +|.||+||+||.+ .|.+..||.
T Consensus 419 d----------~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 419 D----------DYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred h----------hHHHhccccccCCCCceeEEEec
Confidence 4 5669999999997 489999987
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=1.1e-30 Score=324.56 Aligned_cols=304 Identities=20% Similarity=0.205 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
...|.+++.++.+++++++++|||+|||+++.++++.. + ..++|+.|+++|+.|..+++.. +|..+....+
T Consensus 15 r~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~--g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s 85 (591)
T TIGR01389 15 RPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------K--GLTVVISPLISLMKDQVDQLRA-AGVAAAYLNS 85 (591)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------C--CcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 45688999999999999999999999999988777631 1 2456667999999998888754 3433221111
Q ss_pred eEeee-------ccccCCCceEEEEcchHHHHHHh-cCCCCCCccEEEEecCCCCCCC-hhH--HHHHHHHHcccCccce
Q 000991 380 YKVRL-------EGMKGRDTRLMFCTTGILLRRLL-VDRSLRGVTHVIVDEIHERGMN-EDF--LLIVLKELLPRRPELR 448 (1197)
Q Consensus 380 y~ir~-------e~~~~~~t~Ilv~Tpg~LLr~L~-~d~~L~~is~VIIDEaHeR~~~-~D~--Ll~lLr~ll~~r~~lk 448 (1197)
.... ........+|+|+||+.|..... ..-...++++|||||||+.+.. .|| ....+..+....|+.+
T Consensus 86 -~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~ 164 (591)
T TIGR01389 86 -TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVP 164 (591)
T ss_pred -CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCC
Confidence 0100 11123457899999999864322 1224568999999999975321 222 1222333444456667
Q ss_pred EEEecccCCHHH---HHhhhCCC-CccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhh
Q 000991 449 LILMSATLNAEL---FSSYFGGA-PMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1197)
Q Consensus 449 lIlmSATl~~~~---f~~yf~~~-pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 524 (1197)
+|++|||.+... +.++++-. +...+.+..-| ...|.. .
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v----------~--------------------------- 206 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSFDRP-NLRFSV----------V--------------------------- 206 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEEEE----------E---------------------------
Confidence 999999996553 34444311 11111111000 000000 0
Q ss_pred hhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCC
Q 000991 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG 604 (1197)
Q Consensus 525 ~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~ 604 (1197)
+. .+.... +...+.....+++||||+++++++.+++.|...
T Consensus 207 -------------------------------~~---~~~~~~-l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~---- 247 (591)
T TIGR01389 207 -------------------------------KK---NNKQKF-LLDYLKKHRGQSGIIYASSRKKVEELAERLESQ---- 247 (591)
T ss_pred -------------------------------eC---CCHHHH-HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----
Confidence 00 000011 222223334678999999999999999999875
Q ss_pred CCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHh
Q 000991 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1197)
Q Consensus 605 ~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSka 684 (1197)
++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+++.|+ |..
T Consensus 248 ---g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~------------------s~~ 306 (591)
T TIGR01389 248 ---GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG------------------NLE 306 (591)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC------------------CHH
Confidence 56688999999999999999999999999999999999999999999999977776 677
Q ss_pred hHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 685 AARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 685 s~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
+|.||+|||||.| +|.|+.+|+..++.
T Consensus 307 ~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 307 SYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred HHhhhhccccCCCCCceEEEecCHHHHH
Confidence 8999999999996 79999999877654
No 49
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=5.5e-31 Score=314.23 Aligned_cols=633 Identities=15% Similarity=0.140 Sum_probs=356.8
Q ss_pred cchhhhhhhccCCCcccccccccccccCCccccccccccccCCChhhhhhhccccccccccccccccccccccccccccC
Q 000991 48 VAFRLLHHYHYHLPFHLSRRRHAVVTCSGAVTRTRRLDWKAVSYPLLEQQTSNYGRYAYQDESSDDSDREFGSTQQQMCG 127 (1197)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (1197)
-+|+|.+||||..-| +|+|++-+|.......+|.+.+..+..++ ++.+|++|+++-.++..+++..
T Consensus 247 ~~~~e~~~qdyad~L------------~d~y~qie~~~~~~~qdp~v~~~~k~~~~--~~~~~knSlks~~sk~~v~~~~ 312 (1330)
T KOG0949|consen 247 EGLVEHELQDYADVL------------GDKYRQIESRNVGMEQDPLVSGKEKSPTS--AAVHMKNSLKSAQSKFDVKLLY 312 (1330)
T ss_pred chhhHHHHHHHHHHh------------cchhhhHHHhhhhhhcCccccchhhhhhH--HHHHHhcChhccccccchhhhc
Confidence 368999999999999 99999999999999999999999999999 9999999999999999999877
Q ss_pred CCccchhHHHHHHHhh-----hcC--CCccceecccccCcccHHH---HHHHHHHhcccc---------------cccce
Q 000991 128 STLDNIDEWRWKLTML-----LRN--KDEQEVVSRAKKDRRDFEQ---LSALATRMGLHS---------------RQYAK 182 (1197)
Q Consensus 128 ~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------~~~~~ 182 (1197)
.|+++-..--.|++|- -++ +++.-.+...|+...|+.. |+.+.++-+..- ++.++
T Consensus 313 ~Pke~k~gk~gki~Qkqa~ia~~e~~Kke~kl~~e~Nk~knd~g~~ksl~~~~kr~~q~Gi~~ldg~~~~~dip~~Kig~ 392 (1330)
T KOG0949|consen 313 APKEAKGGKAGKISQKQAIIAENERRKKEEKLAKESNKLKNDFGKYKSLDNMSKRNGQRGIRKLDGYVYSFDIPFPKIGK 392 (1330)
T ss_pred CcccccCCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHhhhhhhccceeecccchhHHHH
Confidence 7774333222223320 000 0000011111111123332 455555544322 22233
Q ss_pred EEEeecCCCCCCccCCCcCCC-ccccccCccchHHHHHHHHHHHhhhhhcccccccccCCCCCCCCcchhhhhhhhc---
Q 000991 183 VVVFSKAPLPNYRSDLDEKRP-QREVILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGSTTNDEGLYEQQEQLVQ--- 258 (1197)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 258 (1197)
.+-..-.|+..|-.++...-+ .....++...+.|+++.++.+.+.......+....+....++ ++.+-+..
T Consensus 393 l~~~~v~e~R~~f~~~~~~v~~~~~l~~aId~p~~ik~~v~a~ldhll~~~kq~i~d~lk~~~l-----~sl~~s~~~~l 467 (1330)
T KOG0949|consen 393 LILSNVPELRGEFKLSIGLVKREMLLAIAIDDPGRIKAKVLAVLDHLLLSLKQRIMDCLKLLGL-----ESLAFSVPLKL 467 (1330)
T ss_pred HHHhcchhhccccccccchHHHHHHHHHhhcCchhhHHHHhhhHHHHHHHHHHHHHHHHHHhhh-----hhhhhcCCCCC
Confidence 333333333333333322211 223566777888999988888776654444333333222221 11110110
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHH-----Hh-hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHH
Q 000991 259 -NSVVRERILRQRSLQMHEKQQAWQESPEGQKMLE-----FR-RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 259 -~~~~~~~~l~~~s~~l~~~~~~~~~s~~~~~~~~-----~R-~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~p 331 (1197)
+....+ ...+..+.....+++..++|-.... -| ..+-...+|.+.++.+..+..++|+|||.+||| .++
T Consensus 468 ~d~e~~q---~~~s~g~~~~~fQLqy~Ge~l~rsv~~~kD~RV~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKT-fis 543 (1330)
T KOG0949|consen 468 LDLELDQ---KDLSMGIAGLVFQLQYHGEYLLRSVSSKKDPRVHDFCPDEWQRELLDSVDRNESAVIVAPTSAGKT-FIS 543 (1330)
T ss_pred cchhhhc---ccCCCCccceehhhhhccchhhhccccCCCcchhccCCcHHHHHHhhhhhcccceEEEeeccCCce-ecc
Confidence 100000 0112222233344444444321111 01 124455677899999999999999999999999 556
Q ss_pred HHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc-ccc---eeeeEeeeccccCCCceEEEEcchHHHHHHh
Q 000991 332 QYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK-LGE---SVGYKVRLEGMKGRDTRLMFCTTGILLRRLL 407 (1197)
Q Consensus 332 q~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~-lg~---~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~ 407 (1197)
.|.+|..+.. .....+|++.|+++|+.|++..|...+... +.. ..|--.+..+...-+|+|+|+-|+++-.+|.
T Consensus 544 fY~iEKVLRe--sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLl 621 (1330)
T KOG0949|consen 544 FYAIEKVLRE--SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLL 621 (1330)
T ss_pred HHHHHHHHhh--cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhc
Confidence 6777887754 344578888899999999999887776322 211 1232233334445689999999999998888
Q ss_pred cCC----CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC-CHHHHHhhhC--------CCCccc--
Q 000991 408 VDR----SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFG--------GAPMLH-- 472 (1197)
Q Consensus 408 ~d~----~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl-~~~~f~~yf~--------~~pvi~-- 472 (1197)
+.| +...+++||+||||.-|-..|-++...--++. .+.+|++|||+ |++.|..|.+ ++..+.
T Consensus 622 spp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li---~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~ 698 (1330)
T KOG0949|consen 622 SPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI---PCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYG 698 (1330)
T ss_pred CchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc---CCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehh
Confidence 754 78999999999999876555533332212222 34499999999 9999999987 122221
Q ss_pred ---------cCCcccceeeeehHhHHHHhhhccCc----------ccccccchh--hhhHHHHHHHHH------------
Q 000991 473 ---------IPGFTYPVRAYFLENILEMTRYRLNT----------YNQIDDYGQ--EKSWKMQKQALA------------ 519 (1197)
Q Consensus 473 ---------i~gr~~PV~~~yledi~~l~~~~l~~----------~~~i~~~~~--e~~~~~~~~~~~------------ 519 (1197)
+-++..+-..+|+-............ .+......+ -..|........
T Consensus 699 erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~ 778 (1330)
T KOG0949|consen 699 ERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNI 778 (1330)
T ss_pred hhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhh
Confidence 11222233333322111111000000 000000000 000000000000
Q ss_pred -HHhhhhhh---HHHHHHHHHh---------hhhcchhhhhhhcccc---CCCCCCchhhHHHHHHHHHhhcCCCcEEEE
Q 000991 520 -LRKRKSSI---ASAVEDALEA---------ADFREYSVQTQQSLSC---WNPDSIGFNLIEHVLCHIVKKERPGAVLVF 583 (1197)
Q Consensus 520 -~~~~~~~~---~~~ve~~l~~---------~~~~~~~~~~~~~l~~---~~~~~i~~~li~~ll~~i~~~~~~g~iLVF 583 (1197)
..+....+ ...+.+.+.. .-...........+.. ++.+.+..+ +..++..+.. ...-+.++|
T Consensus 779 ~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle~~~~ys~e~i~~n-il~ll~dLkE-K~~lpaicf 856 (1330)
T KOG0949|consen 779 VTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLESVVDYSSEYILEN-ILDLLMDLKE-KNMLPAICF 856 (1330)
T ss_pred heechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhhhcccCcHHHHHHH-HHHHHHHHHh-ccccchhcc
Confidence 00000000 0000000000 0000000000011111 111111112 4444444433 335678888
Q ss_pred eCCHHHHHHHHHHHHc-------------------------------------C--------CC----------------
Q 000991 584 MTGWDDINSLKDQLQA-------------------------------------H--------PL---------------- 602 (1197)
Q Consensus 584 l~~~~ei~~l~~~L~~-------------------------------------~--------~~---------------- 602 (1197)
-.-+..++.++..+.. . +.
T Consensus 857 n~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~ 936 (1330)
T KOG0949|consen 857 NTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLT 936 (1330)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCccc
Confidence 8877777665332210 0 00
Q ss_pred -------------CCCCC-------ceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCC
Q 000991 603 -------------LGDPS-------RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKA 662 (1197)
Q Consensus 603 -------------~~~~~-------~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~ 662 (1197)
.|+.. --.|+.||++|+..+|..|+-.|+.|...|++||.++..|||+|--++|.-
T Consensus 937 ~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~---- 1012 (1330)
T KOG0949|consen 937 KLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA---- 1012 (1330)
T ss_pred ccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe----
Confidence 00000 014889999999999999999999999999999999999999996555542
Q ss_pred CcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEe-ccccchhhhhhcCCccccccchh
Q 000991 663 KETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHL-YPRYVYDAFADYQLPELLRTPLQ 727 (1197)
Q Consensus 663 k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~L-ys~~~~~~l~~~~~PEIlr~~L~ 727 (1197)
.++|. ++..+|.|++|||||.| -|.+..+ ++......+.-..+|.|+..+.-
T Consensus 1013 ----------gDsLQ---L~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~~p~ 1068 (1330)
T KOG0949|consen 1013 ----------GDSLQ---LDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGAYPY 1068 (1330)
T ss_pred ----------ccccc---cCchhHHhhhccccccccccccceEEEeCcHHHHHHHHHHhhhcccCCCcc
Confidence 12333 46679999999999997 5877666 78887778888888888887653
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.3e-29 Score=286.35 Aligned_cols=383 Identities=18% Similarity=0.201 Sum_probs=242.5
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccce
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES 377 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~ 377 (1197)
-...||..|......+ +++|+.|||-|||+.+...+...+-. .++ ++++++||+-|+.|.++.+.+.+|.+....
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~---~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW---FGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh---cCC-eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 3445677776666554 88899999999999998888766543 222 899999999999999999999998866654
Q ss_pred eeeE--eeecc--ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 378 VGYK--VRLEG--MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 378 VGy~--ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
+... ++.+. ......+|+|+||+++.+-|..+. .+.+++|||+|||| |....-....+.+..+....+..+++|
T Consensus 90 ~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEE
Confidence 4322 22221 112457899999999999988877 89999999999999 655444555566667777788899999
Q ss_pred cccC--CHHHHHhhhCCCCccccCCc----------ccceeeee--------hHhHHHHhhhccCcc-------cccccc
Q 000991 453 SATL--NAELFSSYFGGAPMLHIPGF----------TYPVRAYF--------LENILEMTRYRLNTY-------NQIDDY 505 (1197)
Q Consensus 453 SATl--~~~~f~~yf~~~pvi~i~gr----------~~PV~~~y--------ledi~~l~~~~l~~~-------~~i~~~ 505 (1197)
|||+ +.+.+.+-..+-.+-+|+-+ ...+++.+ ++++.+..+..+.+. ..+...
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 9999 66777766654322222211 12223222 122222222111110 000000
Q ss_pred h---hhhhHHHHHHHHHH--Hhhhh---hh---------------------HHHHHHHHHhhhh---cchhhhhhh----
Q 000991 506 G---QEKSWKMQKQALAL--RKRKS---SI---------------------ASAVEDALEAADF---REYSVQTQQ---- 549 (1197)
Q Consensus 506 ~---~e~~~~~~~~~~~~--~~~~~---~~---------------------~~~ve~~l~~~~~---~~~~~~~~~---- 549 (1197)
. ........ +.... ....+ +. ...+.+++..... .+-+.....
T Consensus 249 ~~~~~kdl~~~~-~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 249 SPVSKKDLLELR-QIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred CcccHhHHHHHH-HHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence 0 00011111 00000 00000 00 0011111111100 000000000
Q ss_pred -----------ccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCc-eEEE----e
Q 000991 550 -----------SLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR-VLLL----A 613 (1197)
Q Consensus 550 -----------~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~-~~I~----~ 613 (1197)
.+.....+.-.++.+..++...++..++.+++||+.-++.++.+.+.|..... ..+ ..|+ -
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~---~~~~rFiGQa~r~ 404 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI---KARVRFIGQASRE 404 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC---cceeEEeeccccc
Confidence 00111223334555666777777777788999999999999999999987521 111 1111 2
Q ss_pred ccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhccc
Q 000991 614 CHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRA 693 (1197)
Q Consensus 614 lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRA 693 (1197)
...||++.+|.++++.|+.|..+|||||+|+|.|+|||+|++||- |++.. |.--+.||+||+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvp----------SeIR~IQR~GRT 466 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVP----------SEIRSIQRKGRT 466 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCc----------HHHHHHHhhCcc
Confidence 236899999999999999999999999999999999999999998 76654 334566999999
Q ss_pred CCCCCCeEEEecccc
Q 000991 694 GRVQPGECYHLYPRY 708 (1197)
Q Consensus 694 GR~~~G~cy~Lys~~ 708 (1197)
||.++|.+|.|+++.
T Consensus 467 GR~r~Grv~vLvt~g 481 (542)
T COG1111 467 GRKRKGRVVVLVTEG 481 (542)
T ss_pred ccCCCCeEEEEEecC
Confidence 999999999999876
No 51
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=297.57 Aligned_cols=342 Identities=21% Similarity=0.246 Sum_probs=220.9
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHH---------Hc--cCCceEEEecchHHHHHHHH
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETE---------AA--RGAACSIICTQPRRISAMAV 362 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~---------~~--~g~~~~IivtqPrR~LA~qv 362 (1197)
-..-|...|...+..++....+++-.|+||||||+++-++|++.+.+ +. ++.....+|+.|||+||.||
T Consensus 200 gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 33457777767777777666999999999999999999999994432 21 22333477788999999999
Q ss_pred HHHHHHHh---CCcccceee-eEe-eeccccCCCceEEEEcchHHHHHHhcCC----CCCCccEEEEecCCCCCCCh---
Q 000991 363 SERVAAER---GEKLGESVG-YKV-RLEGMKGRDTRLMFCTTGILLRRLLVDR----SLRGVTHVIVDEIHERGMNE--- 430 (1197)
Q Consensus 363 a~rVa~e~---g~~lg~~VG-y~i-r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~----~L~~is~VIIDEaHeR~~~~--- 430 (1197)
.+.+.... +..+...+| ..+ ..+...+..++|+|+|||+|+.++..+. .++++.++||||++ |.+.-
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF 358 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHF 358 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccH
Confidence 98775432 333333333 111 1123344578999999999999998776 57889999999999 43433
Q ss_pred hHHHHHHHHHcc--cCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeee---ehHhHHHHhhhccCcccccccc
Q 000991 431 DFLLIVLKELLP--RRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAY---FLENILEMTRYRLNTYNQIDDY 505 (1197)
Q Consensus 431 D~Ll~lLr~ll~--~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~---yledi~~l~~~~l~~~~~i~~~ 505 (1197)
+-|..+|+.+.. .++..|.+++|||++...+...-. .-+...-+.. -++.++..+++.-.+ ..+|.
T Consensus 359 ~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~-------~~k~~~k~~~~~~kiq~Lmk~ig~~~kp-kiiD~- 429 (731)
T KOG0347|consen 359 EELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSS-------SRKKKDKEDELNAKIQHLMKKIGFRGKP-KIIDL- 429 (731)
T ss_pred HHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHH-------hhhccchhhhhhHHHHHHHHHhCccCCC-eeEec-
Confidence 334455555542 345679999999986543221100 0000000000 000111111111110 00000
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeC
Q 000991 506 GQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMT 585 (1197)
Q Consensus 506 ~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~ 585 (1197)
.....+.+.+.+....+ .+..-|+- +++++ ..-+|.+||||+
T Consensus 430 ----------------t~q~~ta~~l~Es~I~C----------------~~~eKD~y-----lyYfl-~ryPGrTlVF~N 471 (731)
T KOG0347|consen 430 ----------------TPQSATASTLTESLIEC----------------PPLEKDLY-----LYYFL-TRYPGRTLVFCN 471 (731)
T ss_pred ----------------CcchhHHHHHHHHhhcC----------------Ccccccee-----EEEEE-eecCCceEEEec
Confidence 00111112222211111 11111110 11122 224799999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcc
Q 000991 586 GWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKET 665 (1197)
Q Consensus 586 ~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~ 665 (1197)
+.+.|.+++-.|... ++..+++|+.|.+.+|-+-+++|++..--|+|||++|++|+|||+|.+||++-.|+
T Consensus 472 sId~vKRLt~~L~~L-------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr-- 542 (731)
T KOG0347|consen 472 SIDCVKRLTVLLNNL-------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR-- 542 (731)
T ss_pred hHHHHHHHHHHHhhc-------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC--
Confidence 999999999999886 56688999999999999999999999999999999999999999999999966665
Q ss_pred cccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 666 SYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 666 ~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
.. ..|.||.||+.|.. .|....|+...
T Consensus 543 ------ts----------eiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 543 ------TS----------EIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred ------cc----------ceeEecccccccccCCCeEEEEeChH
Confidence 33 34559999999995 69998887653
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=4.1e-29 Score=317.66 Aligned_cols=297 Identities=21% Similarity=0.296 Sum_probs=202.9
Q ss_pred CHHHHHHHHHHHHcC------CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 299 SYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~------~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
.+..|...++.+.++ .+.+++|+||||||.++..+++..+.. + ..+++++||++||.|+++.+.+.+..
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g--~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---G--KQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---C--CeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 345666666666553 689999999999999999888876642 2 35666669999999999999876542
Q ss_pred cccceeeeEeeec----------cccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc
Q 000991 373 KLGESVGYKVRLE----------GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1197)
Q Consensus 373 ~lg~~VGy~ir~e----------~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~ 442 (1197)
.+..++.-.++. .......+|+|+||..+ ..+-.+.++++|||||+|+.+... ...++ .
T Consensus 527 -~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv~~---~~~L~---~ 595 (926)
T TIGR00580 527 -FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGVKQ---KEKLK---E 595 (926)
T ss_pred -CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccchhH---HHHHH---h
Confidence 222232211111 11223579999999533 334468899999999999754322 12222 2
Q ss_pred cCccceEEEecccCCHHHHHhhhCC-CC--ccccC-CcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHH
Q 000991 443 RRPELRLILMSATLNAELFSSYFGG-AP--MLHIP-GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQAL 518 (1197)
Q Consensus 443 ~r~~lklIlmSATl~~~~f~~yf~~-~p--vi~i~-gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~ 518 (1197)
..++.++++||||+.+..+.....+ .. ++..+ ....|+..++.+.
T Consensus 596 ~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~------------------------------- 644 (926)
T TIGR00580 596 LRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEY------------------------------- 644 (926)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEec-------------------------------
Confidence 3467899999999866654432221 11 11111 1112333322110
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhh-HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHH
Q 000991 519 ALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNL-IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1197)
Q Consensus 519 ~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~l-i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L 597 (1197)
+... ...+...+ ...+.++||+|+.++++.+++.|
T Consensus 645 -----------------------------------------~~~~i~~~i~~el---~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 645 -----------------------------------------DPELVREAIRREL---LRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred -----------------------------------------CHHHHHHHHHHHH---HcCCeEEEEECCcHHHHHHHHHH
Confidence 0000 00111112 13578999999999999999999
Q ss_pred HcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcc
Q 000991 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1197)
Q Consensus 598 ~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~ 677 (1197)
... + .++.+..+||+|+.++|..+++.|++|+.+|||||+++|+|||||++++||..+.+. |
T Consensus 681 ~~~--~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~---~---------- 742 (926)
T TIGR00580 681 REL--V---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK---F---------- 742 (926)
T ss_pred HHh--C---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC---C----------
Confidence 874 1 246799999999999999999999999999999999999999999999999843332 1
Q ss_pred ccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 678 PSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 678 ~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
+-+++.||+||+||.+ .|.||.+++..
T Consensus 743 ----gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 743 ----GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ----CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 3346789999999985 79999998753
No 53
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3e-30 Score=277.38 Aligned_cols=321 Identities=21% Similarity=0.237 Sum_probs=226.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
.+.+.--..|...| ++.+.....+++++.-|..|+|||.++..++|+.+-.... ....+|++|+|+||.|+.+ +..
T Consensus 99 gIfe~G~ekPSPiQ-eesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~--~IQ~~ilVPtrelALQtSq-vc~ 174 (459)
T KOG0326|consen 99 GIFEKGFEKPSPIQ-EESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN--VIQAIILVPTRELALQTSQ-VCK 174 (459)
T ss_pred HHHHhccCCCCCcc-ccccceeecchhhhhhccCCCCCccceechhhhhcCcccc--ceeEEEEeecchhhHHHHH-HHH
Confidence 33344444555444 5555556799999999999999999999999998753322 2334444599999999765 445
Q ss_pred HhCCccccee----e-eEeeeccc-cCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 369 ERGEKLGESV----G-YKVRLEGM-KGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 369 e~g~~lg~~V----G-y~ir~e~~-~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
+++..++..| | -..+.+-. .+...+++|+|||+++++....- .+++...+|+|||+.. +..||-..+-+.+.
T Consensus 175 ~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl-Ls~~F~~~~e~li~ 253 (459)
T KOG0326|consen 175 ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL-LSVDFQPIVEKLIS 253 (459)
T ss_pred HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh-hchhhhhHHHHHHH
Confidence 5555554333 3 22222221 23567999999999999876654 7899999999999964 66677666555555
Q ss_pred ccCccceEEEecccCCH--HHHH-hhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHH
Q 000991 442 PRRPELRLILMSATLNA--ELFS-SYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQAL 518 (1197)
Q Consensus 442 ~~r~~lklIlmSATl~~--~~f~-~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~ 518 (1197)
-..++.|+++.|||.+. ..|. +|+.. |..+..++++ +-
T Consensus 254 ~lP~~rQillySATFP~tVk~Fm~~~l~k-----------Py~INLM~eL---tl------------------------- 294 (459)
T KOG0326|consen 254 FLPKERQILLYSATFPLTVKGFMDRHLKK-----------PYEINLMEEL---TL------------------------- 294 (459)
T ss_pred hCCccceeeEEecccchhHHHHHHHhccC-----------cceeehhhhh---hh-------------------------
Confidence 56678899999999853 2222 22211 2222222211 00
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHH
Q 000991 519 ALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQ 598 (1197)
Q Consensus 519 ~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~ 598 (1197)
.-+.++... +........+..+.....-...+|||++...++-++..+.
T Consensus 295 ----------~GvtQyYaf---------------------V~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKIT 343 (459)
T KOG0326|consen 295 ----------KGVTQYYAF---------------------VEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKIT 343 (459)
T ss_pred ----------cchhhheee---------------------echhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHH
Confidence 000000000 0000112233444444455678999999999999999998
Q ss_pred cCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccc
Q 000991 599 AHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLP 678 (1197)
Q Consensus 599 ~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~ 678 (1197)
+. ++.+++.|+.|.++.|.+||..|++|.++.+|||+.+.+||||++|++|||+++||
T Consensus 344 el-------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk--------------- 401 (459)
T KOG0326|consen 344 EL-------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK--------------- 401 (459)
T ss_pred hc-------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC---------------
Confidence 87 67799999999999999999999999999999999999999999999999988888
Q ss_pred cccCHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 679 SWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 679 ~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
+..+|.||+||+||.| .|.++.|++-++
T Consensus 402 ---~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 402 ---NAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred ---CHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 6678889999999997 699999987543
No 54
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.3e-29 Score=279.27 Aligned_cols=316 Identities=18% Similarity=0.219 Sum_probs=228.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHH----ccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc--
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEA----ARGAACSIICTQPRRISAMAVSERVAAERGEKLGE-- 376 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~----~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~-- 376 (1197)
|.+....+.++.+++.+|.||+|||+.++++-+.++... +......+++..|||+||.|+--.+.++.-...-.
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc 326 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEE
Confidence 455677788999999999999999999987766554321 22334567888899999999988887765332222
Q ss_pred eeeeEeeeccc--cCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 377 SVGYKVRLEGM--KGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 377 ~VGy~ir~e~~--~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
..|-.-|.+.. ..++..|+++|||.|.++...+- .|..++++|+|||+ |.+++.|-..+.+.++..+|+.++++.|
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeec
Confidence 22322333322 23578999999999998776555 79999999999999 6699999999999999999999999999
Q ss_pred ccCCH--HHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHH
Q 000991 454 ATLNA--ELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAV 531 (1197)
Q Consensus 454 ATl~~--~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~v 531 (1197)
||.+. ..++.-+-..|++..-|..--+........ .+.....
T Consensus 406 ATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~------------i~v~~d~------------------------ 449 (629)
T KOG0336|consen 406 ATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQN------------IIVTTDS------------------------ 449 (629)
T ss_pred ccCchHHHHHHHHhhhCceEEEecccceeeeeeeeee------------EEecccH------------------------
Confidence 99964 344443334455555444321111111000 0000000
Q ss_pred HHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHh-hcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceE
Q 000991 532 EDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVK-KERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVL 610 (1197)
Q Consensus 532 e~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~-~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~ 610 (1197)
....++..... .....+++|||..+.-+..|..-+.-. ++.
T Consensus 450 -------------------------------~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~-------gi~ 491 (629)
T KOG0336|consen 450 -------------------------------EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK-------GIS 491 (629)
T ss_pred -------------------------------HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc-------ccc
Confidence 00011222222 235679999999988777776665543 566
Q ss_pred EEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhh
Q 000991 611 LLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRR 690 (1197)
Q Consensus 611 I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~ 690 (1197)
.-.+||+-.+.+|+..++.|+.|+++|||||++|.+|+|+|||++|+|+++|. ...+|.||.
T Consensus 492 ~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~------------------nIeeYVHRv 553 (629)
T KOG0336|consen 492 SQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPR------------------NIEEYVHRV 553 (629)
T ss_pred hhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCc------------------cHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999955555 445777999
Q ss_pred cccCCCC-CCeEEEeccccchh
Q 000991 691 GRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 691 GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
||+||.| .|..+.++++.++.
T Consensus 554 GrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 554 GRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred cccccCCCCcceEEEEehhhHH
Confidence 9999995 69999999988764
No 55
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.2e-29 Score=283.92 Aligned_cols=316 Identities=21% Similarity=0.265 Sum_probs=229.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc---cCCceEEEecchHHHHHHHHHHHHHHHhCCccccee-
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA---RGAACSIICTQPRRISAMAVSERVAAERGEKLGESV- 378 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~---~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~V- 378 (1197)
|..++.....+++|+-.|-||||||.++..+++.++.... .|.....++++|||+||.|+.... +.+|.-.+..+
T Consensus 250 q~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~ea-Kkf~K~ygl~~v 328 (731)
T KOG0339|consen 250 QCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEA-KKFGKAYGLRVV 328 (731)
T ss_pred cccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHH-HHhhhhccceEE
Confidence 5667777889999999999999999999999998876432 233334444449999999997644 44443333221
Q ss_pred -eeEee--ecc--ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 379 -GYKVR--LEG--MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 379 -Gy~ir--~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
-|+-. .+. ....++.|+|||||+|++++.... .+.+++++||||++ |..+..|...+-......+|+.|.|++
T Consensus 329 ~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllF 407 (731)
T KOG0339|consen 329 AVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLF 407 (731)
T ss_pred EeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEe
Confidence 12211 111 112578999999999999987655 89999999999999 667888887776666668899999999
Q ss_pred cccCC--HHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHH
Q 000991 453 SATLN--AELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASA 530 (1197)
Q Consensus 453 SATl~--~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 530 (1197)
|||+. .+.+++-|-..|+-.+.|.. . + ..+.
T Consensus 408 saTf~~kIe~lard~L~dpVrvVqg~v---g--------e------------------------------------an~d 440 (731)
T KOG0339|consen 408 SATFKKKIEKLARDILSDPVRVVQGEV---G--------E------------------------------------ANED 440 (731)
T ss_pred eccchHHHHHHHHHHhcCCeeEEEeeh---h--------c------------------------------------cccc
Confidence 99984 34444433333333222210 0 0 0000
Q ss_pred HHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceE
Q 000991 531 VEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVL 610 (1197)
Q Consensus 531 ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~ 610 (1197)
+.+.+ .. ...+...+.-+++++......|++|||+....+++.++..|.-. ++.
T Consensus 441 ITQ~V----------------~V---~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk-------~~~ 494 (731)
T KOG0339|consen 441 ITQTV----------------SV---CPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK-------GFN 494 (731)
T ss_pred hhhee----------------ee---ccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc-------cce
Confidence 00000 00 00011223346777777778899999999999999999999876 788
Q ss_pred EEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhh
Q 000991 611 LLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRR 690 (1197)
Q Consensus 611 I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~ 690 (1197)
+..+||++.+.+|.+++..|+.+...|++||+++++|+|||++..||+ ||....+. .+.||+
T Consensus 495 v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD~ardId----------ththri 556 (731)
T KOG0339|consen 495 VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YDFARDID----------THTHRI 556 (731)
T ss_pred eeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------ccccchhH----------HHHHHh
Confidence 999999999999999999999999999999999999999999999999 55444444 455999
Q ss_pred cccCCCC-CCeEEEeccccchh
Q 000991 691 GRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 691 GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
||+||.+ .|+.|.|+|..+-+
T Consensus 557 grtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 557 GRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred hhcccccccceeeEEechhhHH
Confidence 9999997 59999999976543
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=1.6e-28 Score=287.58 Aligned_cols=300 Identities=20% Similarity=0.244 Sum_probs=193.3
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEe------e-----
Q 000991 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKV------R----- 383 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~i------r----- 383 (1197)
+++|+||||||||+++.+++++.+.. +...+++|+.|+++|+.|+++++...++..++...|... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---QKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---CCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 48999999999999999999987532 234578888899999999999999988765543322100 0
Q ss_pred eccc---------cCCCceEEEEcchHHHHHHhcCC-----CCC--CccEEEEecCCCCCCC-hhHHHHHHHHHcccCcc
Q 000991 384 LEGM---------KGRDTRLMFCTTGILLRRLLVDR-----SLR--GVTHVIVDEIHERGMN-EDFLLIVLKELLPRRPE 446 (1197)
Q Consensus 384 ~e~~---------~~~~t~Ilv~Tpg~LLr~L~~d~-----~L~--~is~VIIDEaHeR~~~-~D~Ll~lLr~ll~~r~~ 446 (1197)
.+.. .....+|+++||+.++..+.... .+. ..++|||||+|...-. .+++..+++.+. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~ 155 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DND 155 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcC
Confidence 0000 01236799999999998776521 111 2379999999975322 234555555443 357
Q ss_pred ceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhh
Q 000991 447 LRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSS 526 (1197)
Q Consensus 447 lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~ 526 (1197)
.++|+||||++ +.+.+|+........+ ..++..... ....+... .
T Consensus 156 ~~~i~~SATlp-~~l~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~---~------------------------- 200 (358)
T TIGR01587 156 VPILLMSATLP-KFLKEYAEKIGYVEFN-EPLDLKEER-----RFERHRFI---K------------------------- 200 (358)
T ss_pred CCEEEEecCch-HHHHHHHhcCCCcccc-cCCCCcccc-----ccccccce---e-------------------------
Confidence 88999999997 4566666432211100 001100000 00000000 0
Q ss_pred hHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCC
Q 000991 527 IASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDP 606 (1197)
Q Consensus 527 ~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~ 606 (1197)
...........+..++..+ ..++++||||++.++++.+++.|.....
T Consensus 201 --------------------------~~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~t~~~~~~~~~~L~~~~~---- 247 (358)
T TIGR01587 201 --------------------------IESDKVGEISSLERLLEFI---KKGGKIAIIVNTVDRAQEFYQQLKENAP---- 247 (358)
T ss_pred --------------------------eccccccCHHHHHHHHHHh---hCCCeEEEEECCHHHHHHHHHHHHhhcC----
Confidence 0000000111122222111 2468999999999999999999987521
Q ss_pred CceEEEeccCCCCHHHHHH----hcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 607 SRVLLLACHGSMASSEQRL----IFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 607 ~~~~I~~lHs~L~~~er~~----v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
...+..+||++++.+|.. +++.|++|..+|||||+++|+||||| +++||+ |+ .+
T Consensus 248 -~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~~------------~~ 305 (358)
T TIGR01587 248 -EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------EL------------AP 305 (358)
T ss_pred -CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE--------cC------------CC
Confidence 235889999999999976 48899999999999999999999996 677775 21 24
Q ss_pred HhhHHhhhcccCCCCC-----CeEEEeccccc
Q 000991 683 KAAARQRRGRAGRVQP-----GECYHLYPRYV 709 (1197)
Q Consensus 683 kas~~QR~GRAGR~~~-----G~cy~Lys~~~ 709 (1197)
..+|.||+||+||.+. |.+|.++....
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 5688999999999853 36777765543
No 57
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=269.50 Aligned_cols=317 Identities=19% Similarity=0.240 Sum_probs=226.8
Q ss_pred hhcCCCHHHHHHHHHHHHc--CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 294 RRSLPSYKERDALLKAISE--NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~--~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
..+.|... |+..+..+.. .+++|..+..|+|||+++.+.+|...-..... ...+|+.|+|+||.|+-+ |-.++|
T Consensus 109 ~F~kPskI-Qe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~--PQ~iCLaPtrELA~Q~~e-Vv~eMG 184 (477)
T KOG0332|consen 109 KFQKPSKI-QETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVV--PQCICLAPTRELAPQTGE-VVEEMG 184 (477)
T ss_pred ccCCcchH-HHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccC--CCceeeCchHHHHHHHHH-HHHHhc
Confidence 34456544 4555555554 57999999999999999999999876433233 345677899999999887 557888
Q ss_pred CcccceeeeEeeeccccCC---CceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCCh----hHHHHHHHHHcc
Q 000991 372 EKLGESVGYKVRLEGMKGR---DTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNE----DFLLIVLKELLP 442 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~~~~~---~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~----D~Ll~lLr~ll~ 442 (1197)
...+....|.++....... ..+|+++|||.+++++..-. .+..+.++|+|||+.. +++ |...-+.+.
T Consensus 185 Kf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~M-i~tqG~~D~S~rI~~~--- 260 (477)
T KOG0332|consen 185 KFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVM-IDTQGFQDQSIRIMRS--- 260 (477)
T ss_pred CceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhh-hhcccccccchhhhhh---
Confidence 8877778899987643322 36899999999999887633 6788999999999942 222 222222222
Q ss_pred cCccceEEEecccCCHH--HHHhhh-CCCCccccCCc---ccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHH
Q 000991 443 RRPELRLILMSATLNAE--LFSSYF-GGAPMLHIPGF---TYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQ 516 (1197)
Q Consensus 443 ~r~~lklIlmSATl~~~--~f~~yf-~~~pvi~i~gr---~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~ 516 (1197)
..++.++|++|||.+.. .|+.-+ .++.++.+..+ .++|..+|+.-
T Consensus 261 lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C----------------------------- 311 (477)
T KOG0332|consen 261 LPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLC----------------------------- 311 (477)
T ss_pred cCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeec-----------------------------
Confidence 22588999999998432 333222 22222222111 12222222210
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHH
Q 000991 517 ALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQ 596 (1197)
Q Consensus 517 ~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~ 596 (1197)
-.-+...+.|+.+.....-|..+|||.+++.+..++..
T Consensus 312 ------------------------------------------~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~ 349 (477)
T KOG0332|consen 312 ------------------------------------------ACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEE 349 (477)
T ss_pred ------------------------------------------cchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHH
Confidence 00111233455555556678999999999999999999
Q ss_pred HHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCc
Q 000991 597 LQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCL 676 (1197)
Q Consensus 597 L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l 676 (1197)
+... +..|..+||.|..++|..+.+.|+.|+-||+|+||+.++|||++.|++|||+++|- ....-
T Consensus 350 m~~~-------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~--------~~~~~ 414 (477)
T KOG0332|consen 350 MRAE-------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPV--------KYTGE 414 (477)
T ss_pred HHhc-------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCcc--------ccCCC
Confidence 9986 77899999999999999999999999999999999999999999999999966664 22211
Q ss_pred cccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 677 LPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 677 ~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
-+...|.||+||+||.| .|.+|.|....
T Consensus 415 ----pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 415 ----PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred ----CCHHHHHHHhcccccccccceEEEeeccc
Confidence 25567889999999996 69999987543
No 58
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=1.5e-28 Score=318.61 Aligned_cols=297 Identities=18% Similarity=0.257 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHHHcC------CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 299 SYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~------~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
....|.++++.+.++ .+++++|+||||||.++..+++..+. . .+.++|++||++||.|+++.+.+.++.
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~--g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---N--HKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---c--CCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 445556666666555 78999999999999888766655432 2 345666679999999999998776542
Q ss_pred cccceeeeEeee----c------cccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc
Q 000991 373 KLGESVGYKVRL----E------GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1197)
Q Consensus 373 ~lg~~VGy~ir~----e------~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~ 442 (1197)
.+..++.-.++ + .......+|+|+||+.+ ..+-.+.++++|||||+|+.+.. . ...+..
T Consensus 676 -~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~--~----~e~lk~ 744 (1147)
T PRK10689 676 -WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVR--H----KERIKA 744 (1147)
T ss_pred -CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchh--H----HHHHHh
Confidence 12222211111 1 11123579999999744 23335789999999999975432 1 122223
Q ss_pred cCccceEEEecccCCHHHHHh--h-hCCCCccccCCc-ccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHH
Q 000991 443 RRPELRLILMSATLNAELFSS--Y-FGGAPMLHIPGF-TYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQAL 518 (1197)
Q Consensus 443 ~r~~lklIlmSATl~~~~f~~--y-f~~~pvi~i~gr-~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~ 518 (1197)
..++.++++||||+.+..+.- . +.+..++..+.. ..|+..++.. +
T Consensus 745 l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~------------------~------------- 793 (1147)
T PRK10689 745 MRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE------------------Y------------- 793 (1147)
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEe------------------c-------------
Confidence 456889999999986553321 1 112212221111 1122211100 0
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHH
Q 000991 519 ALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQ 598 (1197)
Q Consensus 519 ~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~ 598 (1197)
........++..+. ..|.++||+++.+.++.+++.|.
T Consensus 794 ----------------------------------------~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~ 830 (1147)
T PRK10689 794 ----------------------------------------DSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLA 830 (1147)
T ss_pred ----------------------------------------CcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHH
Confidence 00001112223332 35789999999999999999998
Q ss_pred cCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccc
Q 000991 599 AHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLP 678 (1197)
Q Consensus 599 ~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~ 678 (1197)
... .+..+..+||+|+.++|..++..|++|+.+|||||+++|+|||||+|++||...-.. |
T Consensus 831 ~~~-----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~---f----------- 891 (1147)
T PRK10689 831 ELV-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH---F----------- 891 (1147)
T ss_pred HhC-----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC---C-----------
Confidence 751 135688899999999999999999999999999999999999999999999411110 1
Q ss_pred cccCHhhHHhhhcccCCCC-CCeEEEeccc
Q 000991 679 SWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1197)
Q Consensus 679 ~~iSkas~~QR~GRAGR~~-~G~cy~Lys~ 707 (1197)
+-++|.||+||+||.+ .|.||.+++.
T Consensus 892 ---glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 892 ---GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ---CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 2356889999999995 7999988864
No 59
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.96 E-value=2.7e-31 Score=314.08 Aligned_cols=574 Identities=8% Similarity=-0.188 Sum_probs=451.3
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHH
Q 000991 285 PEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE 364 (1197)
Q Consensus 285 ~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~ 364 (1197)
.....+...+.-+|..+..+.|++++..|.++++.+.||||||++.+++|+|..........|.++.++||+++|..++.
T Consensus 393 n~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpy 472 (1282)
T KOG0921|consen 393 NRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPY 472 (1282)
T ss_pred CceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccc
Confidence 33445556667789999999999999999999999999999999999999999988777778899999999999999999
Q ss_pred HHHHHhCCcccceeeeEeeecccc-CCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc
Q 000991 365 RVAAERGEKLGESVGYKVRLEGMK-GRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1197)
Q Consensus 365 rVa~e~g~~lg~~VGy~ir~e~~~-~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~ 443 (1197)
++.-++++.++...+|..+.+... -.+..+-+||.+.++..+..+ +.+..+.+.||.|++++++|+++.+++.+
T Consensus 473 g~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~--- 547 (1282)
T KOG0921|consen 473 GSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI--- 547 (1282)
T ss_pred cceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc---
Confidence 999999998888888888776543 345667899999999888765 66778999999999999999999988765
Q ss_pred CccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhh-hccCcccccccchhhhhHHHHHHHHHHHh
Q 000991 444 RPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTR-YRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1197)
Q Consensus 444 r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~-~~l~~~~~i~~~~~e~~~~~~~~~~~~~~ 522 (1197)
| ++.++++|++...|-.++-.+++..++++++|++.++.++-.+... ..-...+...+ +..............
T Consensus 548 -p--~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d---d~~~~~~~~am~~~s 621 (1282)
T KOG0921|consen 548 -P--DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD---PSYNESTRTAMSRLS 621 (1282)
T ss_pred -c--ceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC---hhhcchhhhhhhcch
Confidence 3 3599999999999999999999999999999999887554211100 00000111100 000000000000000
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC
Q 000991 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1197)
Q Consensus 523 ~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~ 602 (1197)
.+......++..+. +.+...+...|+--.++++.|+|+++|--+......+...+.
T Consensus 622 e~d~~f~l~Eal~~------------------------~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~i 677 (1282)
T KOG0921|consen 622 EKDIPFGLIEALLN------------------------DIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEI 677 (1282)
T ss_pred hhcchhHHHHHHHh------------------------hhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhccc
Confidence 00000111111111 111112233333345789999999999999988888887766
Q ss_pred CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 603 ~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
++.. ...+...|..+...+++.+++....+.+++...|+..++.|.+-++.+|++++..+.+.+-+...++.+..+|-+
T Consensus 678 lp~H-sq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 678 LPLH-SQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred ccch-hhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 6532 456788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHhhhcccCCCCCCeEEEeccccchhhhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCCCChhhHHHHHH
Q 000991 683 KAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIE 762 (1197)
Q Consensus 683 kas~~QR~GRAGR~~~G~cy~Lys~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldpP~~~~v~~Al~ 762 (1197)
...-.||.|||+|...+.||++++...+..|..+++|||.++++....+.|+.+-.+.+..|+.+++.+|+...+..+.-
T Consensus 757 gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~l 836 (1282)
T KOG0921|consen 757 GRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGAL 836 (1282)
T ss_pred ccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999998888888877888888888998888776665554
Q ss_pred HHHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHHHHHHhhcccCC
Q 000991 763 YLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARD 842 (1197)
Q Consensus 763 ~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~f~~~~ 842 (1197)
.+.+.-+.+..-.+|++++.+...|+.|..|+|.+.++.+-..+...+++++-..+.+|...-.++. -+...|+++-
T Consensus 837 d~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~---~~g~kfsdhv 913 (1282)
T KOG0921|consen 837 DANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRK---FAGNKFSDHV 913 (1282)
T ss_pred hccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhh---ccccccccch
Confidence 5544444444556899999999999999999999999888777777777776666777765433332 3567899999
Q ss_pred hhhHHHHHHHHHHHHHHhhc-ccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCC
Q 000991 843 YSDHLALVRAYDGWKDAERH-QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGL 898 (1197)
Q Consensus 843 ~SDhl~~l~af~~w~~~~~~-~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl 898 (1197)
.+||.+.+..|+.|..+... .....||..+-+...|+.+-.++..||. ++..-++
T Consensus 914 a~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fpe~ 969 (1282)
T KOG0921|consen 914 AIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFPED 969 (1282)
T ss_pred hhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCccc
Confidence 99999999999999987643 3456899999999999999999999988 6554443
No 60
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=5.3e-28 Score=291.17 Aligned_cols=386 Identities=19% Similarity=0.211 Sum_probs=226.9
Q ss_pred hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
..++...||.+|..... ++++||++|||+|||.++...+++++-.. +..+||+++|++-|+.|....+ ...+...
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---p~~KiVF~aP~~pLv~QQ~a~~-~~~~~~~ 133 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---PKGKVVFLAPTRPLVNQQIACF-SIYLIPY 133 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---CcceEEEeeCCchHHHHHHHHH-hhccCcc
Confidence 56889999999999888 99999999999999999988888776432 4479999999999999988444 3333321
Q ss_pred cceeeeEeeecc-----ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcccC-cc
Q 000991 375 GESVGYKVRLEG-----MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PE 446 (1197)
Q Consensus 375 g~~VGy~ir~e~-----~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r-~~ 446 (1197)
...|....... ..-...+|+|+||++|.+.|.+.. .|+.++++||||||. ....-..-.+++.++... ..
T Consensus 134 -~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hr-a~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 134 -SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHR-TSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccc-ccccccHHHHHHHHHHhhhcc
Confidence 11111000000 112357999999999999887654 478899999999994 333233334444444433 33
Q ss_pred ceEEEecccC--CHHHHHhhhCC------CCc--------cc-cCCcccceeeee------------hHhHHHHhh-hcc
Q 000991 447 LRLILMSATL--NAELFSSYFGG------APM--------LH-IPGFTYPVRAYF------------LENILEMTR-YRL 496 (1197)
Q Consensus 447 lklIlmSATl--~~~~f~~yf~~------~pv--------i~-i~gr~~PV~~~y------------ledi~~l~~-~~l 496 (1197)
.|+|++|||+ +.+...++..+ .+. .+ -.-..+|++... ++.++.... ..+
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 3999999999 55555555542 000 00 011223444100 000000000 000
Q ss_pred ---Cccc-------------ccccchhhhhHHHHHHHHHHHh--hhhh---------hHHHHHHHHHhhhhcchhh----
Q 000991 497 ---NTYN-------------QIDDYGQEKSWKMQKQALALRK--RKSS---------IASAVEDALEAADFREYSV---- 545 (1197)
Q Consensus 497 ---~~~~-------------~i~~~~~e~~~~~~~~~~~~~~--~~~~---------~~~~ve~~l~~~~~~~~~~---- 545 (1197)
.... .......+..|... ...... .... ..+..++.........+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~--~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFY--ALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHH--HHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 0000 00000001111000 000000 0000 0000111000000000000
Q ss_pred --------hhhhccccC--CCC--CCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEe
Q 000991 546 --------QTQQSLSCW--NPD--SIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLA 613 (1197)
Q Consensus 546 --------~~~~~l~~~--~~~--~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~ 613 (1197)
.....+..+ ++. .-.++.+...+.......+..+++||+.+++.+..+...|......+-.+.+.|+.
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 000001111 111 11233334444444456678899999999999999999998532233233444444
Q ss_pred ccC----CCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhh
Q 000991 614 CHG----SMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQR 689 (1197)
Q Consensus 614 lHs----~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR 689 (1197)
-+| +|++.+|+++++.|+.|..+|||||+|+|+|+||+.|+.||- ||..++.. ...||
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snpI----------rmIQr 511 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSNPI----------RMVQR 511 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCccHH----------HHHHH
Confidence 443 799999999999999999999999999999999999999998 66655543 45599
Q ss_pred hcccCCCCCCeEEEecccc
Q 000991 690 RGRAGRVQPGECYHLYPRY 708 (1197)
Q Consensus 690 ~GRAGR~~~G~cy~Lys~~ 708 (1197)
+|| ||...|+|+.|++..
T Consensus 512 rGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 512 RGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred hcc-ccccCCeEEEEEcch
Confidence 999 999999999999843
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=3.1e-28 Score=305.62 Aligned_cols=298 Identities=17% Similarity=0.235 Sum_probs=198.8
Q ss_pred CCHHHHHHHHHHHHcC------CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 298 PSYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~------~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
..+..|+++++.|.++ .+++++|+||||||.++..+++..+. . ++.+++++||++||.|+++.+.+.+.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~--g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---A--GYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---c--CCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3466677777777665 37899999999999999999987653 2 34577777999999999999877652
Q ss_pred CcccceeeeEeeec----------cccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 372 EKLGESVGYKVRLE----------GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e----------~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
..+..++.-.... .....+++|+|+|++.+.. .-.+.++++|||||+|..+... .. .+.
T Consensus 336 -~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~q--r~-~l~--- 404 (681)
T PRK10917 336 -PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVEQ--RL-ALR--- 404 (681)
T ss_pred -hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHHH--HH-HHH---
Confidence 2233333222111 1223468999999987643 2257899999999999643322 11 122
Q ss_pred ccCccceEEEecccCCHHHHHh-hhCCCCccccC---CcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 442 PRRPELRLILMSATLNAELFSS-YFGGAPMLHIP---GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 442 ~~r~~lklIlmSATl~~~~f~~-yf~~~pvi~i~---gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
......++++||||+.+..+.- +++...+..+. ....|+...+...
T Consensus 405 ~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~------------------------------ 454 (681)
T PRK10917 405 EKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPD------------------------------ 454 (681)
T ss_pred hcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCc------------------------------
Confidence 2233578999999986654432 23322211111 1111222222110
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHH--------H
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWD--------D 589 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~--------e 589 (1197)
...+.+...+...+ ....+++||||..+ .
T Consensus 455 -----------------------------------------~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~ 491 (681)
T PRK10917 455 -----------------------------------------SRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQS 491 (681)
T ss_pred -----------------------------------------ccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHH
Confidence 00000111111112 23568999999643 4
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccC
Q 000991 590 INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDA 669 (1197)
Q Consensus 590 i~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~ 669 (1197)
++.+++.|... +. ++.+..+||+|+.++|+.+++.|++|+.+|||||+++|+|||+|++++||+.+.++ |
T Consensus 492 ~~~~~~~L~~~--~~---~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r---~-- 561 (681)
T PRK10917 492 AEETYEELQEA--FP---ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAER---F-- 561 (681)
T ss_pred HHHHHHHHHHH--CC---CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCC---C--
Confidence 56667777754 11 35699999999999999999999999999999999999999999999999954443 1
Q ss_pred CCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecc
Q 000991 670 LNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1197)
Q Consensus 670 ~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys 706 (1197)
+-+.+.||+||+||.+ +|.||.+++
T Consensus 562 ------------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 562 ------------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ------------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 3457889999999995 799999986
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=2.4e-28 Score=304.66 Aligned_cols=300 Identities=18% Similarity=0.255 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHHHcC------CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC-
Q 000991 299 SYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG- 371 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~------~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g- 371 (1197)
.+..|+++++.|.++ .+.+++|+||||||.++..+++..+. .+ ..+++++||++||.|+++.+.+.++
T Consensus 236 lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g--~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 236 LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AG--YQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cC--CcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 345566666666543 35899999999999999888887653 22 3567777999999999999877653
Q ss_pred --CcccceeeeEe------eeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc
Q 000991 372 --EKLGESVGYKV------RLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1197)
Q Consensus 372 --~~lg~~VGy~i------r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~ 443 (1197)
..+...+|-.. ..+.....+.+|+|+|++.+.. ...+.++++|||||+|..+... ... +......
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~q--r~~-l~~~~~~ 383 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQ--RKK-LREKGQG 383 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHH--HHH-HHHhccc
Confidence 33332233110 0111223467999999987653 2357899999999999754332 111 2222111
Q ss_pred CccceEEEecccCCHHHHHh-hhCCCCccc---cCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHH
Q 000991 444 RPELRLILMSATLNAELFSS-YFGGAPMLH---IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1197)
Q Consensus 444 r~~lklIlmSATl~~~~f~~-yf~~~pvi~---i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~ 519 (1197)
....++++||||+.+..+.. .++...+.. .+....|+...+...
T Consensus 384 ~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~-------------------------------- 431 (630)
T TIGR00643 384 GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKH-------------------------------- 431 (630)
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCc--------------------------------
Confidence 12578999999985554332 222211111 111112332222110
Q ss_pred HHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhh-cCCCcEEEEeCCH--------HHH
Q 000991 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK-ERPGAVLVFMTGW--------DDI 590 (1197)
Q Consensus 520 ~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~-~~~g~iLVFl~~~--------~ei 590 (1197)
+....++..+.+. .....++||||.. ..+
T Consensus 432 ------------------------------------------~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a 469 (630)
T TIGR00643 432 ------------------------------------------DEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAA 469 (630)
T ss_pred ------------------------------------------chHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHH
Confidence 0000011111111 2346899999876 345
Q ss_pred HHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCC
Q 000991 591 NSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDAL 670 (1197)
Q Consensus 591 ~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~ 670 (1197)
+.+++.|... + .++.+..+||+|++++|..+++.|++|+.+|||||+++|+|||+|++++||..+.++
T Consensus 470 ~~~~~~L~~~--~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r------- 537 (630)
T TIGR00643 470 EALYERLKKA--F---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER------- 537 (630)
T ss_pred HHHHHHHHhh--C---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc-------
Confidence 6677777653 1 256799999999999999999999999999999999999999999999999844443
Q ss_pred CCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecc
Q 000991 671 NNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1197)
Q Consensus 671 ~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys 706 (1197)
.+-+++.||+|||||.+ +|.||.++.
T Consensus 538 ----------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 538 ----------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ----------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 13467889999999985 799999983
No 63
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.8e-28 Score=293.60 Aligned_cols=437 Identities=20% Similarity=0.241 Sum_probs=277.9
Q ss_pred HHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-----cCCceEEEecchHHHHHHHHHHHHHHHhC---Ccccceee
Q 000991 308 KAISENQVVVVSGETGCGKTTQLPQYILESETEAA-----RGAACSIICTQPRRISAMAVSERVAAERG---EKLGESVG 379 (1197)
Q Consensus 308 ~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-----~g~~~~IivtqPrR~LA~qva~rVa~e~g---~~lg~~VG 379 (1197)
.+...|.+.+||||||||||-.+.+.||..+.+.. .....+||+++|.++||.++++.+.+.++ ..+.+..|
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTG 200 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTG 200 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecC
Confidence 34568999999999999999999999998776411 12456899999999999999999887764 44444444
Q ss_pred eEeeeccccCCCceEEEEcchHH---HHHHhcCC-CCCCccEEEEecCC----CCCCChhHHHHHHHHHcc-cCccceEE
Q 000991 380 YKVRLEGMKGRDTRLMFCTTGIL---LRRLLVDR-SLRGVTHVIVDEIH----ERGMNEDFLLIVLKELLP-RRPELRLI 450 (1197)
Q Consensus 380 y~ir~e~~~~~~t~Ilv~Tpg~L---Lr~L~~d~-~L~~is~VIIDEaH----eR~~~~D~Ll~lLr~ll~-~r~~lklI 450 (1197)
-. .+....-..|+|+|+||+.. -|.-..+. .++.+.+||||||| +||.-.+.+...+.++.. ....+|+|
T Consensus 201 D~-ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRiv 279 (1230)
T KOG0952|consen 201 DT-QLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIV 279 (1230)
T ss_pred cc-hhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEE
Confidence 21 11111235799999999764 23222222 57789999999999 688777766665544433 44678999
Q ss_pred EecccC-CHHHHHhhhCCCC---ccccCCcc--cceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhh
Q 000991 451 LMSATL-NAELFSSYFGGAP---MLHIPGFT--YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1197)
Q Consensus 451 lmSATl-~~~~f~~yf~~~p---vi~i~gr~--~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 524 (1197)
++|||+ |-++++.|++-.| ++...++. .|.+..++- +... +.
T Consensus 280 gLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG-------~k~~-------------------------~~ 327 (1230)
T KOG0952|consen 280 GLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIG-------IKGK-------------------------KN 327 (1230)
T ss_pred EeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEe-------eecc-------------------------cc
Confidence 999999 8999999998533 33333333 333333321 0000 00
Q ss_pred hhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC--
Q 000991 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL-- 602 (1197)
Q Consensus 525 ~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~-- 602 (1197)
......+.+.. ... +.+.+. .+.+++|||+++.+..+.++.|.+...
T Consensus 328 ~~~~~~~d~~~----------------------------~~k-v~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~ 376 (1230)
T KOG0952|consen 328 RQQKKNIDEVC----------------------------YDK-VVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETN 376 (1230)
T ss_pred hhhhhhHHHHH----------------------------HHH-HHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhc
Confidence 00000011000 011 111222 457999999999999998888865311
Q ss_pred ------CCCC-Cc-------eEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCccccc
Q 000991 603 ------LGDP-SR-------VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYD 668 (1197)
Q Consensus 603 ------~~~~-~~-------~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD 668 (1197)
.... .+ ..+..||+||...+|..+++.|..|.++|++||.+++.|+|+|+--++|- | ...||
T Consensus 377 g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK-G---T~~yd 452 (1230)
T KOG0952|consen 377 GEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK-G---TQVYD 452 (1230)
T ss_pred CcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec-C---Ccccc
Confidence 1111 12 46888999999999999999999999999999999999999998777774 3 34588
Q ss_pred CCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEecccc---chhhhhhcCC---------------ccccccchh
Q 000991 669 ALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRY---VYDAFADYQL---------------PELLRTPLQ 727 (1197)
Q Consensus 669 ~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~---~~~~l~~~~~---------------PEIlr~~L~ 727 (1197)
+..+.-.-. +.....|..|||||.+ .|..+.+=+.+ .|..|...+. .||---.+.
T Consensus 453 sskg~f~dl----gilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt 528 (1230)
T KOG0952|consen 453 SSKGSFVDL----GILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVT 528 (1230)
T ss_pred cccCceeee----hHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceee
Confidence 877543322 6678899999999995 57777665443 3444443332 333222222
Q ss_pred hhhHHhhhcCC--------CCHHHHH--hhhcC-CCCh-----hhHHHHHHHHHHhccc--ccCC---cccccccccccc
Q 000991 728 SLCLQIKSLQL--------GSISEFL--SRALQ-PPEP-----LSVKNAIEYLQIIGAL--DENE---NLTVLGRNLSML 786 (1197)
Q Consensus 728 ~l~L~lk~l~~--------~~i~~fL--~~~ld-pP~~-----~~v~~Al~~L~~lGaL--d~~~---~lT~LG~~ls~l 786 (1197)
++--.+..|+. .++..+= -..+. -|.. +.+..++..|.....+ |..+ +.|++||.++.+
T Consensus 529 ~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~y 608 (1230)
T KOG0952|consen 529 NVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNY 608 (1230)
T ss_pred cHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhh
Confidence 22111111110 0111110 01111 1111 1233444455444222 3332 589999999999
Q ss_pred CCchhhHHHHHHhhh-cCCcchHHHHHHhhc
Q 000991 787 PVEPKLGKMLILGAI-FNCLDPVMTVVAGLS 816 (1197)
Q Consensus 787 Pvdp~lgK~ll~g~~-~~Cl~~~ltIaA~ls 816 (1197)
.+.-..-+.++.... |--.+++|.++|.-+
T Consensus 609 Yik~ETme~~nn~~k~~~se~~iL~lis~ae 639 (1230)
T KOG0952|consen 609 YIKYETMETFNNLPKSFYSEDDILALISMAE 639 (1230)
T ss_pred hhhhHHHHHHHhcccccCCHHHHHHHHHhhH
Confidence 999999999998877 778888888877544
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=1.1e-27 Score=296.77 Aligned_cols=346 Identities=17% Similarity=0.171 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHHcCC-eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc--
Q 000991 299 SYKERDALLKAISENQ-VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG-- 375 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~-vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg-- 375 (1197)
.+.+|.+++..+.+|+ ++++.+|||||||.++..|++-. ..+.....++++++|||+||.|+++.+.... ..+.
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~-k~l~~~ 92 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIG-ERLPDV 92 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--cccccccceEEEeCchHHHHHHHHHHHHHHH-HHhccc
Confidence 5667777777788887 67778999999998766666532 1122223356667799999999998775532 2110
Q ss_pred ---------------------ceeeeEeeec-------cccCCCceEEEEcchHHHHHHhcC-------------CCCCC
Q 000991 376 ---------------------ESVGYKVRLE-------GMKGRDTRLMFCTTGILLRRLLVD-------------RSLRG 414 (1197)
Q Consensus 376 ---------------------~~VGy~ir~e-------~~~~~~t~Ilv~Tpg~LLr~L~~d-------------~~L~~ 414 (1197)
..+. .+... ......++|+|+|+.++.+..... ..+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~-~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAIS-TLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEE-EEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 1111 01111 112246789999976665443310 02688
Q ss_pred ccEEEEecCCCCCCChhHHHHHHHHHccc--CccceEEEecccCCHH--HHHhhhCCCCccccCCcccceeeeehHhHHH
Q 000991 415 VTHVIVDEIHERGMNEDFLLIVLKELLPR--RPELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILE 490 (1197)
Q Consensus 415 is~VIIDEaHeR~~~~D~Ll~lLr~ll~~--r~~lklIlmSATl~~~--~f~~yf~~~pvi~i~gr~~PV~~~yledi~~ 490 (1197)
+++||+||||......+.+..+++.+... ..++|+++||||++.+ .+...|...+. .+++....+.
T Consensus 172 v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~------~i~V~~~~l~---- 241 (844)
T TIGR02621 172 DALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY------KHPVLKKRLA---- 241 (844)
T ss_pred ceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc------eeeccccccc----
Confidence 99999999994444444444455443111 1237999999999653 22222221111 1111000000
Q ss_pred HhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHH
Q 000991 491 MTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCH 570 (1197)
Q Consensus 491 l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~ 570 (1197)
. ..+..+... ++......+...+..
T Consensus 242 -------a-~ki~q~v~v-----------------------------------------------~~e~Kl~~lv~~L~~ 266 (844)
T TIGR02621 242 -------A-KKIVKLVPP-----------------------------------------------SDEKFLSTMVKELNL 266 (844)
T ss_pred -------c-cceEEEEec-----------------------------------------------ChHHHHHHHHHHHHH
Confidence 0 000000000 000000001111222
Q ss_pred HHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHH-----HhcCCCCC----Cc-------
Q 000991 571 IVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQR-----LIFDKPED----GV------- 634 (1197)
Q Consensus 571 i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~-----~v~~~f~~----G~------- 634 (1197)
+.. ...+++||||++++.++.+++.|... ++ ..+||.|++.+|. .+++.|++ |.
T Consensus 267 ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~-------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g 336 (844)
T TIGR02621 267 LMK-DSGGAILVFCRTVKHVRKVFAKLPKE-------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQG 336 (844)
T ss_pred HHh-hCCCcEEEEECCHHHHHHHHHHHHhc-------CC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccccc
Confidence 222 34678999999999999999999875 22 7899999999999 77888876 44
Q ss_pred eEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC-C-eEEEeccccch-h
Q 000991 635 RKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-G-ECYHLYPRYVY-D 711 (1197)
Q Consensus 635 ~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~-G-~cy~Lys~~~~-~ 711 (1197)
.+|||||+++|+||||+. ++||+ ++ .+..+|.||+||+||.+. | ..+.+++...- +
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~--------d~------------aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~ 395 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVC--------DL------------APFESMQQRFGRVNRFGELQACQIAVVHLDLGKD 395 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEE--------CC------------CCHHHHHHHhcccCCCCCCCCceEEEEeeccCCC
Confidence 689999999999999987 67765 11 134688999999999964 3 32344322110 0
Q ss_pred hhhhcCCccccccchhhhhHHhhhcCCCCHHHH
Q 000991 712 AFADYQLPELLRTPLQSLCLQIKSLQLGSISEF 744 (1197)
Q Consensus 712 ~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~f 744 (1197)
.-....-||+++..+..+.+..+..+..++..|
T Consensus 396 ~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 396 QDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 111112367777666666655554454444444
No 65
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=8.1e-28 Score=272.14 Aligned_cols=322 Identities=19% Similarity=0.277 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHH---------cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHH
Q 000991 299 SYKERDALLKAIS---------ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAE 369 (1197)
Q Consensus 299 i~~~q~~Il~~I~---------~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e 369 (1197)
.++.|.+++..+. ..+++.|.||||||||+++.++|++.+..+ .-...+.+|+.|+|+||.||+..+...
T Consensus 160 ~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 160 LFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-PVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred ccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-CccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 3444667776662 267899999999999999999999877532 223345666669999999999987554
Q ss_pred hCCcccceeeeEe-----eecc--ccCC----CceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCCh---hHH
Q 000991 370 RGEKLGESVGYKV-----RLEG--MKGR----DTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNE---DFL 433 (1197)
Q Consensus 370 ~g~~lg~~VGy~i-----r~e~--~~~~----~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~---D~L 433 (1197)
. ...|..|+.-. +.|. ..+. ..+|+|+|||+|.++|.+.+ .|+++.++||||++ |-++. +++
T Consensus 239 ~-~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl 316 (620)
T KOG0350|consen 239 N-SGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWL 316 (620)
T ss_pred c-cCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHH
Confidence 3 33343444211 1111 1112 24899999999999998766 79999999999999 32221 111
Q ss_pred HHHHH------------HHc-------------------ccCccceEEEecccC--CHHHHHhhhCCCC-ccccCCcccc
Q 000991 434 LIVLK------------ELL-------------------PRRPELRLILMSATL--NAELFSSYFGGAP-MLHIPGFTYP 479 (1197)
Q Consensus 434 l~lLr------------~ll-------------------~~r~~lklIlmSATl--~~~~f~~yf~~~p-vi~i~gr~~P 479 (1197)
-.++. .++ ...+.+..+.+|||+ ++..+.++=-+.| ++.+.+.
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~--- 393 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP--- 393 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc---
Confidence 11111 111 112333455666666 4554444332222 2221110
Q ss_pred eeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCC
Q 000991 480 VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSI 559 (1197)
Q Consensus 480 V~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i 559 (1197)
.-. .|.+. ..+...... .
T Consensus 394 ~~~----------ryslp-------------------------------~~l~~~~vv---------------------~ 411 (620)
T KOG0350|consen 394 LIG----------RYSLP-------------------------------SSLSHRLVV---------------------T 411 (620)
T ss_pred cce----------eeecC-------------------------------hhhhhceee---------------------c
Confidence 000 00000 000000000 0
Q ss_pred chhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEE
Q 000991 560 GFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVL 639 (1197)
Q Consensus 560 ~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLV 639 (1197)
+....--.+.+++......++|+|+++.+.+.+++..|.-. + ....+.+-.+.|+++...|.+.++.|..|.+.|+|
T Consensus 412 ~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~--~-~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLI 488 (620)
T KOG0350|consen 412 EPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVE--F-CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLI 488 (620)
T ss_pred ccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHH--h-ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEE
Confidence 00001112444455556679999999999999999999821 1 11245566789999999999999999999999999
Q ss_pred eecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 640 ATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 640 ATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
||+++++|||+.+|+.||| ||++.. .-.|.||+||+||.| .|.||.|.+...
T Consensus 489 cSD~laRGiDv~~v~~VIN--------Yd~P~~----------~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 489 CSDALARGIDVNDVDNVIN--------YDPPAS----------DKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred ehhhhhcCCcccccceEee--------cCCCch----------hhHHHHhhcccccccCCceEEEeecccc
Confidence 9999999999999999999 666554 445669999999996 699999987653
No 66
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.95 E-value=2.4e-28 Score=267.84 Aligned_cols=312 Identities=20% Similarity=0.248 Sum_probs=211.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHH--------HccCCceEEEecchHHHHHHHHHHHHHHHhC---
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETE--------AARGAACSIICTQPRRISAMAVSERVAAERG--- 371 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~--------~~~g~~~~IivtqPrR~LA~qva~rVa~e~g--- 371 (1197)
|-+-+..+.++++.|-.|-||||||+.+.++++-.+++ ++.|+.+.||| |.|+||.|..+-+.....
T Consensus 197 QvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiic--PSRELArQt~~iie~~~~~L~ 274 (610)
T KOG0341|consen 197 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIIC--PSRELARQTHDIIEQYVAALQ 274 (610)
T ss_pred eecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEc--CcHHHHHHHHHHHHHHHHHHH
Confidence 44455667899999999999999998877766554443 45778889999 999999999876655431
Q ss_pred ---Cc---ccceee-eEeeec-cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcc
Q 000991 372 ---EK---LGESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1197)
Q Consensus 372 ---~~---lg~~VG-y~ir~e-~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~ 442 (1197)
.+ .+..+| ..++.. .....+.+|+|+|||+|.++|.... .|+-.+++.+||++ |.++..|-..+ +.+..
T Consensus 275 e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddi-r~iF~ 352 (610)
T KOG0341|consen 275 EAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDI-RTIFS 352 (610)
T ss_pred hcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhH-HHHHH
Confidence 11 111222 222211 1234678999999999999998766 78888999999999 54555443332 22222
Q ss_pred -cCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 443 -RRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 443 -~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
.....|.+++|||++.. +..|-..+ -.-||.+..-. .+ ....+.. |
T Consensus 353 ~FK~QRQTLLFSATMP~K-IQ~FAkSA-------LVKPvtvNVGR-----AG--------------AAsldVi-Q----- 399 (610)
T KOG0341|consen 353 FFKGQRQTLLFSATMPKK-IQNFAKSA-------LVKPVTVNVGR-----AG--------------AASLDVI-Q----- 399 (610)
T ss_pred HHhhhhheeeeeccccHH-HHHHHHhh-------cccceEEeccc-----cc--------------ccchhHH-H-----
Confidence 22456799999999754 22221110 11222221100 00 0000000 0
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~ 601 (1197)
-.+.+.+. ..+..++. ++ +....++|||+..+.++..+.++|.-.
T Consensus 400 -----evEyVkqE---------------------------aKiVylLe-CL-QKT~PpVLIFaEkK~DVD~IhEYLLlK- 444 (610)
T KOG0341|consen 400 -----EVEYVKQE---------------------------AKIVYLLE-CL-QKTSPPVLIFAEKKADVDDIHEYLLLK- 444 (610)
T ss_pred -----HHHHHHhh---------------------------hhhhhHHH-Hh-ccCCCceEEEeccccChHHHHHHHHHc-
Confidence 00011100 01111222 22 234579999999999999999999765
Q ss_pred CCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccccc
Q 000991 602 LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWI 681 (1197)
Q Consensus 602 ~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~i 681 (1197)
++.+..+||+-.+++|...++.|+.|+-.|+|||++|..|+|+|+|.+|||++.|.
T Consensus 445 ------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~------------------ 500 (610)
T KOG0341|consen 445 ------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPE------------------ 500 (610)
T ss_pred ------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChH------------------
Confidence 67799999999999999999999999999999999999999999999999965554
Q ss_pred CHhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 682 SKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 682 Skas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
...+|.||+||+||.+ .|.+-.++.+...
T Consensus 501 eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 501 EIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred HHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 4458889999999996 5999888876543
No 67
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4.3e-27 Score=281.19 Aligned_cols=372 Identities=20% Similarity=0.199 Sum_probs=247.5
Q ss_pred hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
..+-+..+|++.+.+++.+..|+|+|+|.+|||.++..+|.-.- ....+.++|.|-++|.+|-.+.+...+|. +
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-----~h~TR~iYTSPIKALSNQKfRDFk~tF~D-v 367 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-----KHMTRTIYTSPIKALSNQKFRDFKETFGD-V 367 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-----hhccceEecchhhhhccchHHHHHHhccc-c
Confidence 34567888999999999999999999999999988776664321 23458999999999999999999888874 3
Q ss_pred cceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCC-----CCCCChhHHHHHHHHHcccCccce
Q 000991 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIH-----ERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 375 g~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaH-----eR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
|. +..+...++++.+++||+++|..+|-++. .++++.+||+|||| |||.-.+-.+++ ..++++
T Consensus 368 gL-----lTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIM------lP~HV~ 436 (1248)
T KOG0947|consen 368 GL-----LTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM------LPRHVN 436 (1248)
T ss_pred ce-----eecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeee------ccccce
Confidence 33 33455567889999999999999998776 67899999999999 788766544333 346899
Q ss_pred EEEecccC-CHHHHHhhhCC-----CCccccCCcccceeeeehHh--HHHHhhhccCcccccccchhhhhHHHHHHHHHH
Q 000991 449 LILMSATL-NAELFSSYFGG-----APMLHIPGFTYPVRAYFLEN--ILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1197)
Q Consensus 449 lIlmSATl-~~~~f~~yf~~-----~pvi~i~gr~~PV~~~yled--i~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~ 520 (1197)
+|++|||+ |...|++|.|. ..|+....|..|.+.++... ...+ ++..+. .....-+.....
T Consensus 437 ~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~ki----------idq~g~-fl~~~~~~a~~~ 505 (1248)
T KOG0947|consen 437 FILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKI----------IDQNGI-FLLKGIKDAKDS 505 (1248)
T ss_pred EEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehh----------hcccch-hhhhcchhhhhh
Confidence 99999999 89999999984 23555666778877654321 1110 000000 000000000000
Q ss_pred HhhhhhhHHHHHHHHHhhhhcc----hhhhh---hhccccCCCCCCch--hhHHHHHHHHHhhcCCCcEEEEeCCHHHHH
Q 000991 521 RKRKSSIASAVEDALEAADFRE----YSVQT---QQSLSCWNPDSIGF--NLIEHVLCHIVKKERPGAVLVFMTGWDDIN 591 (1197)
Q Consensus 521 ~~~~~~~~~~ve~~l~~~~~~~----~~~~~---~~~l~~~~~~~i~~--~li~~ll~~i~~~~~~g~iLVFl~~~~ei~ 591 (1197)
.++...... ++..- ....++ ..... ......+ +...+. ..+.+++.++.+ ..--|++|||.+++.|+
T Consensus 506 ~~~~ak~~~-~~~~~-~~~~rgs~~~ggk~~~~~g~~r~~~-~~~nrr~~~~~l~lin~L~k-~~lLP~VvFvFSkkrCd 581 (1248)
T KOG0947|consen 506 LKKEAKFVD-VEKSD-ARGGRGSQKRGGKTNYHNGGSRGSG-IGKNRRKQPTWLDLINHLRK-KNLLPVVVFVFSKKRCD 581 (1248)
T ss_pred hcccccccc-ccccc-ccccccccccCCcCCCCCCCccccc-ccccccccchHHHHHHHHhh-cccCceEEEEEccccHH
Confidence 000000000 00000 000000 00000 0000000 111111 245566666543 34679999999999999
Q ss_pred HHHHHHHcCCCCCCCC-------------------c-------------eEEEeccCCCCHHHHHHhcCCCCCCceEEEE
Q 000991 592 SLKDQLQAHPLLGDPS-------------------R-------------VLLLACHGSMASSEQRLIFDKPEDGVRKIVL 639 (1197)
Q Consensus 592 ~l~~~L~~~~~~~~~~-------------------~-------------~~I~~lHs~L~~~er~~v~~~f~~G~~kVLV 639 (1197)
+.++.|....+..+.. + -.++.||||+-+--++-|+..|..|-+|||+
T Consensus 582 e~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLF 661 (1248)
T KOG0947|consen 582 EYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLF 661 (1248)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEe
Confidence 9999998754322211 1 1488999999999999999999999999999
Q ss_pred eecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEecccc
Q 000991 640 ATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRY 708 (1197)
Q Consensus 640 ATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~ 708 (1197)
||.++++|||+|.-.+|++ ++.| +|... -..+...+|.||+|||||.| .|.++.+....
T Consensus 662 ATETFAMGVNMPARtvVF~-Sl~K---hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 662 ATETFAMGVNMPARTVVFS-SLRK---HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ehhhhhhhcCCCceeEEee-ehhh---ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999999888876 3333 33322 23357789999999999997 59888886543
No 68
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=276.76 Aligned_cols=361 Identities=21% Similarity=0.228 Sum_probs=249.6
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
+-+..+|...+.+|.+++.|+|+|-|.+|||.++..+|...+-+ .-+||+|.|-++|.+|-++.+..|++. +|.
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~D-VGL 201 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFKD-VGL 201 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhcc-cce
Confidence 44578899999999999999999999999998888877766543 237999999999999999999999973 555
Q ss_pred eeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCC-----CCCCChhHHHHHHHHHcccCccceEE
Q 000991 377 SVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIH-----ERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 377 ~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaH-----eR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
..| +-..++++..+|+|+++|..+|-++. .+..+.+||+||+| |||+-.+-- ++-..++++.|
T Consensus 202 MTG-----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEET------IIllP~~vr~V 270 (1041)
T KOG0948|consen 202 MTG-----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEET------IILLPDNVRFV 270 (1041)
T ss_pred eec-----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeee------EEeccccceEE
Confidence 555 33356788999999999999998766 78999999999999 677655422 22334689999
Q ss_pred EecccC-CHHHHHhhhC-----CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhh
Q 000991 451 LMSATL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1197)
Q Consensus 451 lmSATl-~~~~f~~yf~-----~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 524 (1197)
++|||+ |+..|++|.- .|.++...-|.-|...|.... -+..+ +..++..+.-.
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~----ggdGl--ylvVDek~~Fr--------------- 329 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPA----GGDGL--YLVVDEKGKFR--------------- 329 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecC----CCCee--EEEEecccccc---------------
Confidence 999999 9999999985 567777777777766552110 00000 00011100000
Q ss_pred hhhHHHHHHHHHhh----hhcchhhhhhh-ccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHc
Q 000991 525 SSIASAVEDALEAA----DFREYSVQTQQ-SLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1197)
Q Consensus 525 ~~~~~~ve~~l~~~----~~~~~~~~~~~-~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~ 599 (1197)
.+....++... ....+...... .-.......-.-..+..++..|..+ ...|++||..++++|+..+-.+.+
T Consensus 330 ---ednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~k 405 (1041)
T KOG0948|consen 330 ---EDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSK 405 (1041)
T ss_pred ---hHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhcc
Confidence 00011111100 00000000000 0000000011112355556666544 367999999999999999887765
Q ss_pred CCCCCCCC--------------------------------ceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccc
Q 000991 600 HPLLGDPS--------------------------------RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETS 647 (1197)
Q Consensus 600 ~~~~~~~~--------------------------------~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtG 647 (1197)
..+..+.. +-.|+.|||||-+--.+.|+-.|..|-+||++||.+.+.|
T Consensus 406 ldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiG 485 (1041)
T KOG0948|consen 406 LDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIG 485 (1041)
T ss_pred CcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhc
Confidence 43221100 1258899999999999999999999999999999999999
Q ss_pred cccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccc
Q 000991 648 ITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV 709 (1197)
Q Consensus 648 IdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~ 709 (1197)
+|+|.-++|.- .....+.-.-.|||--+|+||+|||||.| .|.|+.++.+..
T Consensus 486 LNMPAkTVvFT----------~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm 540 (1041)
T KOG0948|consen 486 LNMPAKTVVFT----------AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKM 540 (1041)
T ss_pred cCCcceeEEEe----------eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcC
Confidence 99998887742 23333334468999999999999999997 599999987643
No 69
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.4e-27 Score=262.51 Aligned_cols=308 Identities=21% Similarity=0.264 Sum_probs=211.2
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC----CceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG----AACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g----~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
.-|.-.|+ ..+..+.+|++++.-|.||||||.++.+++++.++..... .....++++|||+||.|++..+.+..
T Consensus 40 ekpTlIQs-~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~- 117 (569)
T KOG0346|consen 40 EKPTLIQS-SAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV- 117 (569)
T ss_pred CCcchhhh-cccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH-
Confidence 34555554 4455566888999999999999999999999998864321 12344455599999999998774432
Q ss_pred CcccceeeeEeeecc------------ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCC---CCCChhHHH
Q 000991 372 EKLGESVGYKVRLEG------------MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHE---RGMNEDFLL 434 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~------------~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHe---R~~~~D~Ll 434 (1197)
..++-.+|.-. .....++|+|+||+.+++++..+. .+..++++|+|||+- .|.+.|
T Consensus 118 ----~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeed--- 190 (569)
T KOG0346|consen 118 ----EYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEED--- 190 (569)
T ss_pred ----HHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHH---
Confidence 11221111111 122468999999999999998887 688899999999993 233333
Q ss_pred HHHHHHcc-cCccceEEEecccC--CHHHHHhhhCCCCccc-cCCcccceeeeehHhHHHHhhhccCcccccccchhhhh
Q 000991 435 IVLKELLP-RRPELRLILMSATL--NAELFSSYFGGAPMLH-IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKS 510 (1197)
Q Consensus 435 ~lLr~ll~-~r~~lklIlmSATl--~~~~f~~yf~~~pvi~-i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~ 510 (1197)
++.+.. ..+..|.++||||+ |...+...|-..|++. .....-| ++.++..|
T Consensus 191 --lk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~------------------~~dqL~Qy----- 245 (569)
T KOG0346|consen 191 --LKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELP------------------NPDQLTQY----- 245 (569)
T ss_pred --HHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCC------------------CcccceEE-----
Confidence 222222 33677999999999 5566777775555431 1111001 00000000
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHh-hcCCCcEEEEeCCHHH
Q 000991 511 WKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVK-KERPGAVLVFMTGWDD 589 (1197)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~-~~~~g~iLVFl~~~~e 589 (1197)
.+.+ .+.. ...++..+++ .--.|++|||+++.+.
T Consensus 246 ---------------------------------------~v~c--se~D----KflllyallKL~LI~gKsliFVNtIdr 280 (569)
T KOG0346|consen 246 ---------------------------------------QVKC--SEED----KFLLLYALLKLRLIRGKSLIFVNTIDR 280 (569)
T ss_pred ---------------------------------------EEEe--ccch----hHHHHHHHHHHHHhcCceEEEEechhh
Confidence 0000 0000 1111222221 1246899999999999
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc--------------------------
Q 000991 590 INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM-------------------------- 643 (1197)
Q Consensus 590 i~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni-------------------------- 643 (1197)
+.++.-.|+.. ++....+.|.||..-|.-|++.|..|...|||||+.
T Consensus 281 ~YrLkLfLeqF-------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkks 353 (569)
T KOG0346|consen 281 CYRLKLFLEQF-------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKS 353 (569)
T ss_pred hHHHHHHHHHh-------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccc
Confidence 99999999886 667788999999999999999999999999999991
Q ss_pred ---------cccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccc
Q 000991 644 ---------AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1197)
Q Consensus 644 ---------aEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~ 707 (1197)
..+|||+..|..|||+++|. +..+|+||+||++|.+ +|.+..++..
T Consensus 354 kkK~D~E~GVsRGIDF~~V~~VlNFD~P~------------------t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 354 KKKLDKESGVSRGIDFHHVSNVLNFDFPE------------------TVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred ccccCchhchhccccchheeeeeecCCCC------------------chHHHHHhccccccCCCCCceEEEecc
Confidence 24899999999999966665 4557789999999995 7999888654
No 70
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.9e-27 Score=262.66 Aligned_cols=326 Identities=19% Similarity=0.308 Sum_probs=232.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHH
Q 000991 288 QKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1197)
Q Consensus 288 ~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa 367 (1197)
+.+..+-..-|...||.+|+..+ .|.++++.+.+|+|||.++...+++.+- -.-..+.+++.+|+|+||.|+.+.+
T Consensus 39 rgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD--~~~ke~qalilaPtreLa~qi~~v~- 114 (397)
T KOG0327|consen 39 RGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQID--MSVKETQALILAPTRELAQQIQKVV- 114 (397)
T ss_pred hHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcC--cchHHHHHHHhcchHHHHHHHHHHH-
Confidence 35556667789999999999988 7899999999999999998888887652 2234567888889999999998544
Q ss_pred HHhCCcc----cceeeeEee---eccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHH
Q 000991 368 AERGEKL----GESVGYKVR---LEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKE 439 (1197)
Q Consensus 368 ~e~g~~l----g~~VGy~ir---~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ 439 (1197)
...|... ..++|-... .........+|+++|||.++.++.... ....+..+|+||++|+ +..+|...+-..
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm-Ls~gfkdqI~~i 193 (397)
T KOG0327|consen 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM-LSRGFKDQIYDI 193 (397)
T ss_pred HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh-hccchHHHHHHH
Confidence 4444332 223342111 112233457999999999999997665 4667999999999985 555555555555
Q ss_pred HcccCccceEEEecccCCHHH--HHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 440 LLPRRPELRLILMSATLNAEL--FSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 440 ll~~r~~lklIlmSATl~~~~--f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
.....++.|++++|||++.+. .++-|.. +|+.+.--.+ +
T Consensus 194 f~~lp~~vQv~l~SAT~p~~vl~vt~~f~~----------~pv~i~vkk~--------------------~--------- 234 (397)
T KOG0327|consen 194 FQELPSDVQVVLLSATMPSDVLEVTKKFMR----------EPVRILVKKD--------------------E--------- 234 (397)
T ss_pred HHHcCcchhheeecccCcHHHHHHHHHhcc----------CceEEEecch--------------------h---------
Confidence 555677899999999997653 2222221 1222111100 0
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHH
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L 597 (1197)
...+.+.+..... ..+ .+...++.++. .....+|||+|++.+..+...|
T Consensus 235 --------ltl~gikq~~i~v---------------~k~------~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L 283 (397)
T KOG0327|consen 235 --------LTLEGIKQFYINV---------------EKE------EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKL 283 (397)
T ss_pred --------hhhhheeeeeeec---------------ccc------ccccHHHHHHH--hhhcceEEecchhhHHHHHHHH
Confidence 0000000000000 000 02334566665 4578899999999999999999
Q ss_pred HcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcc
Q 000991 598 QAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1197)
Q Consensus 598 ~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~ 677 (1197)
..+ ++.+...|+.|.+.+|..+...|+.|..+|||.|+.+++|+|+-++..||++.+|.
T Consensus 284 ~~~-------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~-------------- 342 (397)
T KOG0327|consen 284 RAH-------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA-------------- 342 (397)
T ss_pred hhC-------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc--------------
Confidence 776 67789999999999999999999999999999999999999999999999955553
Q ss_pred ccccCHhhHHhhhcccCCCC-CCeEEEeccccchhhh
Q 000991 678 PSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDAF 713 (1197)
Q Consensus 678 ~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~~l 713 (1197)
-+.+|.||+||+||.+ +|....+++..+...+
T Consensus 343 ----~~~~yihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 343 ----RKENYIHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred ----chhhhhhhcccccccCCCceeeeeehHhhHHHH
Confidence 4557779999999995 7999999987665443
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=6.1e-26 Score=291.16 Aligned_cols=384 Identities=17% Similarity=0.186 Sum_probs=223.0
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
.+....+|.++...+.++ +++|++|||+|||.++...+...+ . . ...+++++.|++.|+.|+++.+...++....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l-~-~--~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERL-H-K--KGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHH-H-h--CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 466677888888877666 889999999999998887777655 2 2 2346777779999999999999887765211
Q ss_pred ceeeeEeeecc----ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEE
Q 000991 376 ESVGYKVRLEG----MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 376 ~~VGy~ir~e~----~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
..+.+...... ....+.+|+|+||+++...+.... .+.++++|||||||+.. .......+++......+..+++
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~-~~~~~~~i~~~~~~~~~~~~il 166 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAV-GNYAYVYIAERYHEDAKNPLVL 166 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccc-ccccHHHHHHHHHhcCCCCEEE
Confidence 11111111000 011357899999999988776655 67899999999999532 2222222334444445567899
Q ss_pred EecccC--CHHHHHhhhCCC--CccccC--------Ccccceeeee-----hHh---HHHHhhh-------ccCcccccc
Q 000991 451 LMSATL--NAELFSSYFGGA--PMLHIP--------GFTYPVRAYF-----LEN---ILEMTRY-------RLNTYNQID 503 (1197)
Q Consensus 451 lmSATl--~~~~f~~yf~~~--pvi~i~--------gr~~PV~~~y-----led---i~~l~~~-------~l~~~~~i~ 503 (1197)
+||||+ +.+.+.....+- ..+.+. ....+....+ .+. +...... .+.......
T Consensus 167 ~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~ 246 (773)
T PRK13766 167 GLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIV 246 (773)
T ss_pred EEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 999998 333333322210 111111 1111111111 011 1000000 000000000
Q ss_pred c----chhhhhHHHHHHHHHH-----------------Hhhhhhh--------HHHHHHHHHhhhhcch----hh-----
Q 000991 504 D----YGQEKSWKMQKQALAL-----------------RKRKSSI--------ASAVEDALEAADFREY----SV----- 545 (1197)
Q Consensus 504 ~----~~~e~~~~~~~~~~~~-----------------~~~~~~~--------~~~ve~~l~~~~~~~~----~~----- 545 (1197)
. ................ ....... ...+..++........ ..
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l 326 (773)
T PRK13766 247 SISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRL 326 (773)
T ss_pred cCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHH
Confidence 0 0000000000000000 0000000 0000011110000000 00
Q ss_pred -------hhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccC--
Q 000991 546 -------QTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHG-- 616 (1197)
Q Consensus 546 -------~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs-- 616 (1197)
.....+.......-..+.+..++..+.....++++||||++++.++.+.+.|... ++.+..+||
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~-------~~~~~~~~g~~ 399 (773)
T PRK13766 327 VEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE-------GIKAVRFVGQA 399 (773)
T ss_pred HhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC-------CCceEEEEccc
Confidence 0000011111222334555666666665567889999999999999999999764 333455555
Q ss_pred ------CCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhh
Q 000991 617 ------SMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRR 690 (1197)
Q Consensus 617 ------~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~ 690 (1197)
+|+..+|..+++.|+.|..+|||||+++++|+|+|++++||+ ||++. |...+.||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~----------s~~r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVP----------SEIRSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCC----------CHHHHHHHh
Confidence 499999999999999999999999999999999999999999 65533 455677999
Q ss_pred cccCCCCCCeEEEeccccch
Q 000991 691 GRAGRVQPGECYHLYPRYVY 710 (1197)
Q Consensus 691 GRAGR~~~G~cy~Lys~~~~ 710 (1197)
||+||.++|.+|.|+++..-
T Consensus 462 GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred cccCcCCCCEEEEEEeCCCh
Confidence 99999999999999876543
No 72
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.3e-26 Score=268.78 Aligned_cols=324 Identities=17% Similarity=0.210 Sum_probs=221.1
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc---CCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR---GAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~---g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
.-|...|. ..+..+..+++++.|||||||||+++..+|+..+....+ ..+-+.+|+.|+|+||.|++..+.+.--.
T Consensus 157 ~~Pt~iq~-~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~ 235 (593)
T KOG0344|consen 157 DEPTPIQK-QAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSID 235 (593)
T ss_pred CCCCcccc-hhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCC
Confidence 34554454 556667799999999999999999999999998875442 33456777889999999999877654311
Q ss_pred --cccceee--eEeeec----cccCCCceEEEEcchHHHHHHhcCC---CCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 373 --KLGESVG--YKVRLE----GMKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 373 --~lg~~VG--y~ir~e----~~~~~~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
.-....+ |..... -......+|++.||-.+...+..++ .+.++.++|+||++. -.+-.++..-+..++
T Consensus 236 ~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~-lfe~~~f~~Qla~I~ 314 (593)
T KOG0344|consen 236 EGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL-LFEPEFFVEQLADIY 314 (593)
T ss_pred CCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh-hhChhhHHHHHHHHH
Confidence 1111111 111000 0112347899999999999888776 789999999999993 233334444444443
Q ss_pred c--cCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHH
Q 000991 442 P--RRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1197)
Q Consensus 442 ~--~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~ 519 (1197)
. ..|++++-++|||++.. ..+|..-. ...++.+.+-
T Consensus 315 sac~s~~i~~a~FSat~~~~-VEE~~~~i-------~~~~~~vivg---------------------------------- 352 (593)
T KOG0344|consen 315 SACQSPDIRVALFSATISVY-VEEWAELI-------KSDLKRVIVG---------------------------------- 352 (593)
T ss_pred HHhcCcchhhhhhhccccHH-HHHHHHHh-------hccceeEEEe----------------------------------
Confidence 3 34889999999998543 22222100 0011111100
Q ss_pred HHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHc
Q 000991 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1197)
Q Consensus 520 ~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~ 599 (1197)
..+.....+++.+..+. .. .-..-.+..++..+-..++|||+.+.+.+..|...|..
T Consensus 353 ---~~~sa~~~V~QelvF~g-----se---------------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~ 409 (593)
T KOG0344|consen 353 ---LRNSANETVDQELVFCG-----SE---------------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI 409 (593)
T ss_pred ---cchhHhhhhhhhheeee-----cc---------------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh
Confidence 00000111111111000 00 00111244455566778999999999999999999962
Q ss_pred CCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccc
Q 000991 600 HPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPS 679 (1197)
Q Consensus 600 ~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~ 679 (1197)
. .++.|..+||..++.+|..++++|+.|++.|++||+++++|||+-+|+.||++++|.
T Consensus 410 ~------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~---------------- 467 (593)
T KOG0344|consen 410 Y------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQ---------------- 467 (593)
T ss_pred c------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCc----------------
Confidence 2 367799999999999999999999999999999999999999999999999966666
Q ss_pred ccCHhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 680 WISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 680 ~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
|..+|.||+||+||.+ .|++|.+|+..+.
T Consensus 468 --s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 468 --SDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred --hhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 6778889999999996 5999999998543
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=1.5e-25 Score=273.05 Aligned_cols=319 Identities=14% Similarity=0.090 Sum_probs=196.3
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
.....+|.+.+..+..++..++++|||+|||..+.. +....+.. ..++++|++||++|+.|+.+++.+........
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc---CCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 455566676666666778889999999999987654 33333322 22367777799999999999997654322211
Q ss_pred eeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 377 SVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 377 ~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
..+ +........+.+|+|+|++.+.+... .+++++++|||||||+-. .+-+..+++.+ .+..++++||||+
T Consensus 189 ~~~--i~~g~~~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~~~--~~~~~~il~~~---~~~~~~lGLTATp 259 (501)
T PHA02558 189 MHK--IYSGTAKDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHLFT--GKSLTSIITKL---DNCKFKFGLTGSL 259 (501)
T ss_pred eeE--EecCcccCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchhccc--chhHHHHHHhh---hccceEEEEeccC
Confidence 112 11111222457899999999876432 267899999999999632 23333333332 1234689999999
Q ss_pred CHHH-----HHhhhCCCCcc------ccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhh
Q 000991 457 NAEL-----FSSYFGGAPML------HIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1197)
Q Consensus 457 ~~~~-----f~~yf~~~pvi------~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1197)
.... +..+||..... .-.|...+++..... . .+..... ... ...
T Consensus 260 ~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~---------------~-~~~~~~~----~~~-----~~~ 314 (501)
T PHA02558 260 RDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIF---------------L-RYPDEDR----VKL-----KGE 314 (501)
T ss_pred CCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEe---------------c-cCCHHHh----hhh-----ccc
Confidence 4221 23355431000 000111111110000 0 0000000 000 000
Q ss_pred hhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCC
Q 000991 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1197)
Q Consensus 526 ~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 605 (1197)
...+.+.... .......++..++..+. ..+.++|||+...++++.+++.|...
T Consensus 315 ~~~~~~~~l~--------------------~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~----- 367 (501)
T PHA02558 315 DYQEEIKYIT--------------------SHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV----- 367 (501)
T ss_pred chHHHHHHHh--------------------ccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc-----
Confidence 0000000000 00001123333333333 23568999999999999999999875
Q ss_pred CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEee-cccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHh
Q 000991 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLAT-NMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1197)
Q Consensus 606 ~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVAT-niaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSka 684 (1197)
+..+..+||+++.++|..+++.|+.|...||||| +++++|+|+|++++||....++ |+.
T Consensus 368 --g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~------------------s~~ 427 (501)
T PHA02558 368 --YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSK------------------SKI 427 (501)
T ss_pred --CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCc------------------chh
Confidence 4568999999999999999999999999999998 8999999999999999844444 667
Q ss_pred hHHhhhcccCCCCCCe
Q 000991 685 AARQRRGRAGRVQPGE 700 (1197)
Q Consensus 685 s~~QR~GRAGR~~~G~ 700 (1197)
.+.||+||+||.++|+
T Consensus 428 ~~~QriGR~~R~~~~K 443 (501)
T PHA02558 428 IVLQSIGRVLRKHGSK 443 (501)
T ss_pred hhhhhhhccccCCCCC
Confidence 8889999999998765
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=1.1e-25 Score=262.91 Aligned_cols=303 Identities=17% Similarity=0.171 Sum_probs=182.0
Q ss_pred HHHHHHHHHHcCC--eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC-------C
Q 000991 302 ERDALLKAISENQ--VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG-------E 372 (1197)
Q Consensus 302 ~q~~Il~~I~~~~--vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g-------~ 372 (1197)
+|.+.++++.+++ +++|++|||||||.++..+++. . + .+.+++.|+++|+.++++++...+. .
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-----~-~--~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-----G-E--NDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-----c-C--CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4677788887665 5899999999999999888774 1 1 2346666999999999999887762 1
Q ss_pred cccceeeeEee----e----------c--------cccCCCceEEEEcchHHHHHHhc---CC------CCCCccEEEEe
Q 000991 373 KLGESVGYKVR----L----------E--------GMKGRDTRLMFCTTGILLRRLLV---DR------SLRGVTHVIVD 421 (1197)
Q Consensus 373 ~lg~~VGy~ir----~----------e--------~~~~~~t~Ilv~Tpg~LLr~L~~---d~------~L~~is~VIID 421 (1197)
.+....|-... . + ......+.|+++||+++...+.. ++ .+.++++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 11112221000 0 0 00012467788888888654432 22 26899999999
Q ss_pred cCCCCCCChh-HHH---HHHHHHcccCccceEEEecccCCHHHHH---hh-hCCCCccccCCcccceeeeehHhHHHHh-
Q 000991 422 EIHERGMNED-FLL---IVLKELLPRRPELRLILMSATLNAELFS---SY-FGGAPMLHIPGFTYPVRAYFLENILEMT- 492 (1197)
Q Consensus 422 EaHeR~~~~D-~Ll---~lLr~ll~~r~~lklIlmSATl~~~~f~---~y-f~~~pvi~i~gr~~PV~~~yledi~~l~- 492 (1197)
|+|+.+.... .++ ..+..+.......++|+||||++..... +. +-++++..++|+.|.-... .+-.....
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~~~ 231 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN-PELEADNKT 231 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC-hhhhccccc
Confidence 9998664322 222 2233222222357999999999765322 22 1245777777774322100 00000000
Q ss_pred -hhccC-cccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHH---HH
Q 000991 493 -RYRLN-TYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIE---HV 567 (1197)
Q Consensus 493 -~~~l~-~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~---~l 567 (1197)
++... +..... +.. ........+. ..
T Consensus 232 ~~~~~~~~~i~~~-~~~------------------------------------------------~~~~~~~~l~~l~~~ 262 (357)
T TIGR03158 232 QSFRPVLPPVELE-LIP------------------------------------------------APDFKEEELSELAEE 262 (357)
T ss_pred cccceeccceEEE-EEe------------------------------------------------CCchhHHHHHHHHHH
Confidence 00000 000000 000 0000000111 12
Q ss_pred HHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccc
Q 000991 568 LCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETS 647 (1197)
Q Consensus 568 l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtG 647 (1197)
+.+..+...++++||||++...++.+++.|+... .++.+..+||.++..+|.++. +..|||||+++|+|
T Consensus 263 i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-----~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rG 331 (357)
T TIGR03158 263 VIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-----LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVG 331 (357)
T ss_pred HHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-----CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcc
Confidence 2222333456799999999999999999998641 134578899999999987653 67899999999999
Q ss_pred cccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccC
Q 000991 648 ITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAG 694 (1197)
Q Consensus 648 IdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAG 694 (1197)
||||++ +||. . |. +..+|.||+||+|
T Consensus 332 iDi~~~-~vi~-~-p~------------------~~~~yiqR~GR~g 357 (357)
T TIGR03158 332 VDFKRD-WLIF-S-AR------------------DAAAFWQRLGRLG 357 (357)
T ss_pred cCCCCc-eEEE-C-CC------------------CHHHHhhhcccCC
Confidence 999987 4552 1 22 6678999999998
No 75
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.4e-26 Score=281.35 Aligned_cols=403 Identities=19% Similarity=0.268 Sum_probs=259.1
Q ss_pred HHHHHHHHhcccccccceEEEeecCCCCCCccCCCcCCCccccccCccchHHH-HHHHHHHHhhhhhcccccccccCCCC
Q 000991 165 QLSALATRMGLHSRQYAKVVVFSKAPLPNYRSDLDEKRPQREVILPFGLLREV-DAHLKAYLSQKYINASMSSLSNVGST 243 (1197)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1197)
..+.+++.|.+.-++-...+-.|++.+-.||.+ .++...-+++. .+-++.|...+.- -.-....+..+
T Consensus 295 d~~~~~~~~~~~~~~~~~~~~~S~~~~epFRkn---------fy~e~~di~~ms~~eV~~yr~~l~~-i~v~g~~~pkp- 363 (997)
T KOG0334|consen 295 DNRNAAKNMNLKAKKNLIQVDHSKISYEPFRKN---------FYIEVRDIKRMSAAEVDEYRCELDG-IKVKGKECPKP- 363 (997)
T ss_pred chHHHHHHhccccccceeecccccccchhhhhc---------ccccchhHHHHHHHHHHHhhcCccc-eeeccCCCCcc-
Confidence 467788999888887666788888888888853 44444444443 2333444211100 00000000000
Q ss_pred CCCCcchhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhhc---CCCHHHHHHHHHHHHcCCeEEEEe
Q 000991 244 TNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESPEGQKMLEFRRS---LPSYKERDALLKAISENQVVVVSG 320 (1197)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~l~~~~~~~~~s~~~~~~~~~R~~---LPi~~~q~~Il~~I~~~~vvII~a 320 (1197)
...|.+.+....++..-+. =+....|.+.+.+|..+++||.+|
T Consensus 364 ----------------------------------v~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgva 409 (997)
T KOG0334|consen 364 ----------------------------------VTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVA 409 (997)
T ss_pred ----------------------------------cchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEee
Confidence 0235544443333333221 144445677888899999999999
Q ss_pred cCCChHHHHHHHHHHHHHHH-----HccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc----eee-eEeee-ccccC
Q 000991 321 ETGCGKTTQLPQYILESETE-----AARGAACSIICTQPRRISAMAVSERVAAERGEKLGE----SVG-YKVRL-EGMKG 389 (1197)
Q Consensus 321 pTGSGKTtq~pq~ILe~~~~-----~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~----~VG-y~ir~-e~~~~ 389 (1197)
.||||||..+.++++.++.. .+.|+-+.|+ .|||+||.|+.+.+...... ++. .+| +.+.. -....
T Consensus 410 kTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~--aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelk 486 (997)
T KOG0334|consen 410 KTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL--APTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELK 486 (997)
T ss_pred ccCCccchhhhcchhhhhhcCCChhhCCCceEEEE--cCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHh
Confidence 99999999999999876653 2344444444 49999999999888666432 332 222 11110 01122
Q ss_pred CCceEEEEcchHHHHHHhcCC----CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHH--HHHh
Q 000991 390 RDTRLMFCTTGILLRRLLVDR----SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAE--LFSS 463 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~----~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~--~f~~ 463 (1197)
+.+.|+|||||+.++.+..+. .|.+++++|+||++ |-.+..|.-.+.+.+...+|+.|.+++|||.+.. .++.
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~ 565 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALAR 565 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHH
Confidence 469999999999999886554 56777899999999 4445555555555555568999999999998654 2222
Q ss_pred hhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcch
Q 000991 464 YFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREY 543 (1197)
Q Consensus 464 yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~ 543 (1197)
-.-.. ||.+.+.- ... +...+.+
T Consensus 566 ~vl~~----------Pveiiv~~--------~sv-----------------------------V~k~V~q---------- 588 (997)
T KOG0334|consen 566 KVLKK----------PVEIIVGG--------RSV-----------------------------VCKEVTQ---------- 588 (997)
T ss_pred HhhcC----------CeeEEEcc--------cee-----------------------------EeccceE----------
Confidence 11112 22221110 000 0000000
Q ss_pred hhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHH
Q 000991 544 SVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQ 623 (1197)
Q Consensus 544 ~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er 623 (1197)
.+.. ..+..+.+..++..+-.....+++||||...+.+..|.+.|.+. ++.+..+||+.++.+|
T Consensus 589 ------~v~V---~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a-------g~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 589 ------VVRV---CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA-------GYNCDSLHGGVDQHDR 652 (997)
T ss_pred ------EEEE---ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc-------CcchhhhcCCCchHHH
Confidence 0000 00011112233333333345899999999999999999999976 5556679999999999
Q ss_pred HHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEE
Q 000991 624 RLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECY 702 (1197)
Q Consensus 624 ~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy 702 (1197)
..+++.|++|..+++|||+++++|+|++++..||+ ||.++.+. .|.||.||+||++ .|.||
T Consensus 653 ~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~e----------dyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 653 SSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YDFPNHYE----------DYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred HhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cccchhHH----------HHHHHhcccccCCccceeE
Confidence 99999999999999999999999999999999999 55555444 3669999999996 59999
Q ss_pred Eeccc
Q 000991 703 HLYPR 707 (1197)
Q Consensus 703 ~Lys~ 707 (1197)
.+.+.
T Consensus 715 tFi~p 719 (997)
T KOG0334|consen 715 TFITP 719 (997)
T ss_pred EEeCh
Confidence 88776
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=9.7e-26 Score=285.37 Aligned_cols=331 Identities=23% Similarity=0.250 Sum_probs=224.8
Q ss_pred HhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 293 FRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 293 ~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
.+.....|.+|.+.++.+.++++|||+.+||||||.++.++|+++++.... .+.+++-|+++||....+++.+....
T Consensus 65 ~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~---a~AL~lYPtnALa~DQ~~rl~~~~~~ 141 (851)
T COG1205 65 KAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS---ARALLLYPTNALANDQAERLRELISD 141 (851)
T ss_pred HhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC---ccEEEEechhhhHhhHHHHHHHHHHh
Confidence 344455999999999999999999999999999999999999999986433 24444449999999999999877643
Q ss_pred cccceeeeEe-----eec---cccCCCceEEEEcchHHHHHHhcCC-----CCCCccEEEEecCCC-CCCChhHHHHHHH
Q 000991 373 KLGESVGYKV-----RLE---GMKGRDTRLMFCTTGILLRRLLVDR-----SLRGVTHVIVDEIHE-RGMNEDFLLIVLK 438 (1197)
Q Consensus 373 ~lg~~VGy~i-----r~e---~~~~~~t~Ilv~Tpg~LLr~L~~d~-----~L~~is~VIIDEaHe-R~~~~D~Ll~lLr 438 (1197)
.. ..|+..+ ..+ ......++|+++||.||-.+++... .++++++|||||+|- ||.....+..++|
T Consensus 142 ~~-~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llR 220 (851)
T COG1205 142 LP-GKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLR 220 (851)
T ss_pred CC-CcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHH
Confidence 32 2333221 111 1124578999999999988665543 478899999999994 7777666666666
Q ss_pred HHcccC----ccceEEEecccC-CHHHH-HhhhCCCCccc-cCCcccceee--eehHhHHHHhhhccCcccccccchhhh
Q 000991 439 ELLPRR----PELRLILMSATL-NAELF-SSYFGGAPMLH-IPGFTYPVRA--YFLENILEMTRYRLNTYNQIDDYGQEK 509 (1197)
Q Consensus 439 ~ll~~r----~~lklIlmSATl-~~~~f-~~yf~~~pvi~-i~gr~~PV~~--~yledi~~l~~~~l~~~~~i~~~~~e~ 509 (1197)
+++... .++++|.+|||+ |+..| .++|+. ..-. +.+-..|-.. +...+ ++...
T Consensus 221 RL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~-~f~~~v~~~g~~~~~~~~~~~~----------p~~~~------- 282 (851)
T COG1205 221 RLLRRLRRYGSPLQIICTSATLANPGEFAEELFGR-DFEVPVDEDGSPRGLRYFVRRE----------PPIRE------- 282 (851)
T ss_pred HHHHHHhccCCCceEEEEeccccChHHHHHHhcCC-cceeeccCCCCCCCceEEEEeC----------Ccchh-------
Confidence 665532 378999999999 55544 455542 2222 3333333221 11110 00000
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHH
Q 000991 510 SWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD 589 (1197)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~e 589 (1197)
.. ..+ ... .......++...+. .+-++|||+.++..
T Consensus 283 -----------~~--~~~---r~s--------------------------~~~~~~~~~~~~~~--~~~~tL~F~~sr~~ 318 (851)
T COG1205 283 -----------LA--ESI---RRS--------------------------ALAELATLAALLVR--NGIQTLVFFRSRKQ 318 (851)
T ss_pred -----------hh--hhc---ccc--------------------------hHHHHHHHHHHHHH--cCceEEEEEehhhh
Confidence 00 000 000 00001111222222 34689999999999
Q ss_pred HHHHHHHHHcCCC-CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCccccc
Q 000991 590 INSLKDQLQAHPL-LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYD 668 (1197)
Q Consensus 590 i~~l~~~L~~~~~-~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD 668 (1197)
++.+......... .+......+..++|++..++|++++..++.|+.+++++||.+|-||||.++..||.+|.|.
T Consensus 319 ~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~----- 393 (851)
T COG1205 319 VELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPG----- 393 (851)
T ss_pred hhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCC-----
Confidence 9998633322110 1101123488999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecc
Q 000991 669 ALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1197)
Q Consensus 669 ~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys 706 (1197)
.|..+++||+|||||.+ .+..+..+.
T Consensus 394 ------------~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 394 ------------VSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ------------chHHHHHHhhhhccCCCCCceEEEEeC
Confidence 26679999999999997 454444443
No 77
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.94 E-value=1.4e-26 Score=266.98 Aligned_cols=321 Identities=19% Similarity=0.283 Sum_probs=235.8
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh----C
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER----G 371 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~----g 371 (1197)
.+|... |.+.+.++..+-++||.+..|+|||+++....++.+.. +.....++++.|||++|+|+.+.|.... |
T Consensus 46 ~~ptki-QaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~--~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 46 ALPTKI-QAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS--RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred cCCCch-hhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc--ccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 466644 56677778899999999999999999998888887743 3445566666799999999999886653 3
Q ss_pred Ccccceee-eEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCc-cce
Q 000991 372 EKLGESVG-YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP-ELR 448 (1197)
Q Consensus 372 ~~lg~~VG-y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~-~lk 448 (1197)
..+...+| -....+...-..++|+|+|||+++.+...+- ..+.++++|+|||+.. +++..+..-+..++...| ..|
T Consensus 123 ~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL-~~t~sfq~~In~ii~slP~~rQ 201 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKL-MDTESFQDDINIIINSLPQIRQ 201 (980)
T ss_pred cceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhh-hchhhHHHHHHHHHHhcchhhe
Confidence 34444444 1222233334679999999999999887665 7889999999999964 555555554555544334 568
Q ss_pred EEEecccCC---HHHHHhhhCCCCccccCCcc---cceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHh
Q 000991 449 LILMSATLN---AELFSSYFGGAPMLHIPGFT---YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1197)
Q Consensus 449 lIlmSATl~---~~~f~~yf~~~pvi~i~gr~---~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~ 522 (1197)
++.+|||-+ .+.+++|+.++..+....+. +-++.|+..- ..+
T Consensus 202 v~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~---------~s~----------------------- 249 (980)
T KOG4284|consen 202 VAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAK---------CSP----------------------- 249 (980)
T ss_pred eeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeec---------cCC-----------------------
Confidence 999999985 35677888765555443321 2222222110 000
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC
Q 000991 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1197)
Q Consensus 523 ~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~ 602 (1197)
+-....+.+....|.++++.-+-...||||.....++.++..|...
T Consensus 250 --------------------------------nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss-- 295 (980)
T KOG4284|consen 250 --------------------------------NNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS-- 295 (980)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc--
Confidence 0000112334456777888778889999999999999999999986
Q ss_pred CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 603 ~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
++.+..+.|.|++.+|..+++..+.-..+|||||+.-++|||-|.|+.|||.+.| . .
T Consensus 296 -----G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p--------~----------d 352 (980)
T KOG4284|consen 296 -----GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAP--------A----------D 352 (980)
T ss_pred -----CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCC--------c----------c
Confidence 7789999999999999999999999999999999999999999999999994444 3 4
Q ss_pred HhhHHhhhcccCCCCC-CeEEEeccccc
Q 000991 683 KAAARQRRGRAGRVQP-GECYHLYPRYV 709 (1197)
Q Consensus 683 kas~~QR~GRAGR~~~-G~cy~Lys~~~ 709 (1197)
-..|.||+|||||.|. |.++.++.+.+
T Consensus 353 ~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 353 EETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred hHHHHHHhhhcccccccceeEEEeccch
Confidence 4567799999999974 99988876544
No 78
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.7e-25 Score=278.96 Aligned_cols=370 Identities=21% Similarity=0.279 Sum_probs=247.4
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
...+.++.+|++.+.+|+.+..|+||||||||||.++..++...+. + + .++++|.|.++|.+|.+.++..++|.-
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-~--~--qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-D--G--QRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-c--C--CceEeccchhhhhhhHHHHHHHHhhhh
Confidence 3557788899999999999999999999999999877766655443 2 2 249999999999999999999999865
Q ss_pred ccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCC-----CCCCChhHHHHHHHHHcccCccc
Q 000991 374 LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIH-----ERGMNEDFLLIVLKELLPRRPEL 447 (1197)
Q Consensus 374 lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaH-----eR~~~~D~Ll~lLr~ll~~r~~l 447 (1197)
...+|.-.+ +-..++++.++|+|+++|-++|..+. .+.++.+||+||+| +||+-.+-.+.+ ...++
T Consensus 190 -~~~vGL~TG-Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~------lP~~v 261 (1041)
T COG4581 190 -ADMVGLMTG-DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL------LPDHV 261 (1041)
T ss_pred -hhhccceec-ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHh------cCCCC
Confidence 344554333 33346789999999999999998874 89999999999999 566655433332 23568
Q ss_pred eEEEecccC-CHHHHHhhhC-----CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 448 RLILMSATL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 448 klIlmSATl-~~~~f~~yf~-----~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
++|+||||+ |++.|+.|++ .+.++..+.|.-|...++.... .+ +..++.... ..... +.
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~-~l-------~~lvde~~~---~~~~~----~~ 326 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGK-GL-------FDLVDEKKK---FNAEN----FP 326 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCC-ce-------eeeeccccc---chhhc----ch
Confidence 999999999 9999999998 5667788888889888776430 00 000110000 00000 00
Q ss_pred hhhhhhHHHHHHHHHhhhhc-c-hhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHc
Q 000991 522 KRKSSIASAVEDALEAADFR-E-YSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~-~-~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~ 599 (1197)
+.........+......+.. . +...+. .. .++.........++.++. ....-++++|+-++..|+..+..+..
T Consensus 327 ~a~~~l~~~~~~~~~~~~~~~~~~a~~~~-~~---~~~~~~~~~~~~iv~~l~-~~~~lP~I~F~FSr~~Ce~~a~~~~~ 401 (1041)
T COG4581 327 SANRSLSCFSEKVRETDDGDVGRYARRTK-AL---RGSAKGPAGRPEIVNKLD-KDNLLPAIVFSFSRRGCEEAAQILST 401 (1041)
T ss_pred hhhhhhhccchhccccCcccccccccccc-cc---CCcccccccchHHHhhhh-hhcCCceEEEEEchhhHHHHHHHhcc
Confidence 00000000000000000000 0 000000 00 001111111123344433 33467999999999999998887763
Q ss_pred CCCC--------------------CCC-Cc-------------eEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccc
Q 000991 600 HPLL--------------------GDP-SR-------------VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAE 645 (1197)
Q Consensus 600 ~~~~--------------------~~~-~~-------------~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaE 645 (1197)
.... +.. .. -.++.||++|-+..+..+.+.|..|-+|||+||.+++
T Consensus 402 ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s 481 (1041)
T COG4581 402 LDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFA 481 (1041)
T ss_pred cccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhh
Confidence 2110 000 00 1366899999999999999999999999999999999
Q ss_pred cccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEecc
Q 000991 646 TSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYP 706 (1197)
Q Consensus 646 tGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys 706 (1197)
.|||+|.-++|+ +++.| ||.. .-.|++..+|.|+.|||||.| .|.++.+.+
T Consensus 482 ~GiNmPartvv~-~~l~K---~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 482 IGINMPARTVVF-TSLSK---FDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred hhcCCcccceee-eeeEE---ecCC------ceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 999999766665 56666 5522 257889999999999999997 588888733
No 79
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=6.7e-25 Score=262.24 Aligned_cols=304 Identities=19% Similarity=0.202 Sum_probs=203.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEe
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKV 382 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~i 382 (1197)
|+++++.+.+++++++..|||+|||.++-++.+=. . +..||+.|-..|-....+.+. ..|......-+-..
T Consensus 22 Q~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~---G~TLVVSPLiSLM~DQV~~l~-~~Gi~A~~lnS~l~ 92 (590)
T COG0514 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----E---GLTLVVSPLISLMKDQVDQLE-AAGIRAAYLNSTLS 92 (590)
T ss_pred HHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----C---CCEEEECchHHHHHHHHHHHH-HcCceeehhhcccC
Confidence 78999999999999999999999998777666521 1 256666799988765555442 22322111100000
Q ss_pred e------eccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCC-CChhHH--HHHHHHHcccCccceEEEe
Q 000991 383 R------LEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERG-MNEDFL--LIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 383 r------~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~-~~~D~L--l~lLr~ll~~r~~lklIlm 452 (1197)
+ .........+|+|.+|++|..--..+. .-..+.+++|||||+-+ +-.||- ...+..+....|++.++.+
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~Al 172 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLAL 172 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEE
Confidence 1 111223457899999998853211111 24568999999999743 222332 2234455556678899999
Q ss_pred cccCCHHHH---HhhhC-CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhH
Q 000991 453 SATLNAELF---SSYFG-GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1197)
Q Consensus 453 SATl~~~~f---~~yf~-~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 528 (1197)
|||.+...- .+-++ +.+.+.+.+..-|- ++|
T Consensus 173 TATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN-i~~-------------------------------------------- 207 (590)
T COG0514 173 TATATPRVRDDIREQLGLQDANIFRGSFDRPN-LAL-------------------------------------------- 207 (590)
T ss_pred eCCCChHHHHHHHHHhcCCCcceEEecCCCch-hhh--------------------------------------------
Confidence 999976532 22221 11111111110000 000
Q ss_pred HHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCc
Q 000991 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR 608 (1197)
Q Consensus 529 ~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~ 608 (1197)
. +.... ...+.+. .+.. ......++.+|||.|+..++.+++.|... +
T Consensus 208 ~-v~~~~-----------------------~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~-------g 254 (590)
T COG0514 208 K-VVEKG-----------------------EPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN-------G 254 (590)
T ss_pred h-hhhcc-----------------------cHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC-------C
Confidence 0 00000 0000000 1111 12345678999999999999999999986 7
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHh
Q 000991 609 VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQ 688 (1197)
Q Consensus 609 ~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~Q 688 (1197)
+.+.++|++|+.++|+.+.+.|.++.++|||||+.+.+|||.|||++||++++|+ |-.+|.|
T Consensus 255 ~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~------------------s~EsYyQ 316 (590)
T COG0514 255 ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG------------------SIESYYQ 316 (590)
T ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC------------------CHHHHHH
Confidence 7899999999999999999999999999999999999999999999999988887 7789999
Q ss_pred hhcccCCCC-CCeEEEeccccchh
Q 000991 689 RRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 689 R~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
-.|||||.| +-.|+.||+..+..
T Consensus 317 E~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 317 ETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred HHhhccCCCCcceEEEeeccccHH
Confidence 999999996 79999999987754
No 80
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=257.40 Aligned_cols=417 Identities=21% Similarity=0.225 Sum_probs=259.8
Q ss_pred HHHHHHHHH-HcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc------CCceEEEecchHHHHHHHHHHHHHHHh---C
Q 000991 302 ERDALLKAI-SENQVVVVSGETGCGKTTQLPQYILESETEAAR------GAACSIICTQPRRISAMAVSERVAAER---G 371 (1197)
Q Consensus 302 ~q~~Il~~I-~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~------g~~~~IivtqPrR~LA~qva~rVa~e~---g 371 (1197)
.|..+.++. ....++++|||||+|||-.+.+-+|+.+-.+.+ -...+|++++|.++|+..+...+++.+ |
T Consensus 313 IQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~G 392 (1674)
T KOG0951|consen 313 IQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLG 392 (1674)
T ss_pred HHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccC
Confidence 345555544 456799999999999999999999988753322 134589999999999999988776654 3
Q ss_pred CcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcC-C---CCCCccEEEEecCC----CCCCChhHHH-HHHHHHcc
Q 000991 372 EKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD-R---SLRGVTHVIVDEIH----ERGMNEDFLL-IVLKELLP 442 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d-~---~L~~is~VIIDEaH----eR~~~~D~Ll-~lLr~ll~ 442 (1197)
..+++..|-+.. ....-..|+|++|||+.-- .+... . ..+-++++||||+| .||.--+-.. -..+....
T Consensus 393 I~V~ElTgD~~l-~~~qieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses 470 (1674)
T KOG0951|consen 393 ITVLELTGDSQL-GKEQIEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSES 470 (1674)
T ss_pred cEEEEecccccc-hhhhhhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhh
Confidence 334333332111 1122357999999998642 22222 1 34568999999998 3654333222 22233333
Q ss_pred cCccceEEEecccC-CHHHHHhhhCCCC----ccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 443 RRPELRLILMSATL-NAELFSSYFGGAP----MLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 443 ~r~~lklIlmSATl-~~~~f~~yf~~~p----vi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
.....+++++|||+ |-++.+.|+...+ .+.-.-|..|++..|+.- .+
T Consensus 471 ~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi-~e--------------------------- 522 (1674)
T KOG0951|consen 471 TEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGI-TE--------------------------- 522 (1674)
T ss_pred cccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEecc-cc---------------------------
Confidence 44678999999999 7888888776433 222234445555555320 00
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHH
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQL 597 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L 597 (1197)
++.... -+++. +.....+++....++||||+.++++..+.+..+
T Consensus 523 ---k~~~~~-----~qamN----------------------------e~~yeKVm~~agk~qVLVFVHsRkET~ktA~aI 566 (1674)
T KOG0951|consen 523 ---KKPLKR-----FQAMN----------------------------EACYEKVLEHAGKNQVLVFVHSRKETAKTARAI 566 (1674)
T ss_pred ---CCchHH-----HHHHH----------------------------HHHHHHHHHhCCCCcEEEEEEechHHHHHHHHH
Confidence 000000 00000 112333445556799999999999999888887
Q ss_pred HcCCC------------------------------CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccc
Q 000991 598 QAHPL------------------------------LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETS 647 (1197)
Q Consensus 598 ~~~~~------------------------------~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtG 647 (1197)
+.... +.+--.+.++.||+||+..+|..+++.|..|.++|+++|.++++|
T Consensus 567 Rd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawg 646 (1674)
T KOG0951|consen 567 RDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWG 646 (1674)
T ss_pred HHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhh
Confidence 63110 111124568899999999999999999999999999999999999
Q ss_pred cccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC-----CeEEEeccccchh-hhhhcCCc--
Q 000991 648 ITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-----GECYHLYPRYVYD-AFADYQLP-- 719 (1197)
Q Consensus 648 IdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~-----G~cy~Lys~~~~~-~l~~~~~P-- 719 (1197)
+|+|+-+++|- ....||+..+.-. .+|..+..||.|||||.+. |+...=+++-.|. .+...++|
T Consensus 647 vnlpahtViik----gtqvy~pekg~w~----elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpie 718 (1674)
T KOG0951|consen 647 VNLPAHTVIIK----GTQVYDPEKGRWT----ELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIE 718 (1674)
T ss_pred cCCCcceEEec----CccccCcccCccc----cCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCCh
Confidence 99999888885 4456998887643 3599999999999999963 3333223333332 22233333
Q ss_pred cccccchhhhhHH-hhhcCCCCH---HHHHh------hhcCCCC-----------------hhhHHHHHHHHHHhccccc
Q 000991 720 ELLRTPLQSLCLQ-IKSLQLGSI---SEFLS------RALQPPE-----------------PLSVKNAIEYLQIIGALDE 772 (1197)
Q Consensus 720 EIlr~~L~~l~L~-lk~l~~~~i---~~fL~------~~ldpP~-----------------~~~v~~Al~~L~~lGaLd~ 772 (1197)
+-.-..|.. ||. =+.+|+.++ .++|. +.+..|. .+.+..|.-.|.+.|.+--
T Consensus 719 sq~~~rl~d-~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~y 797 (1674)
T KOG0951|consen 719 SQFVSRLAD-CLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKY 797 (1674)
T ss_pred HHHHHHhhh-hhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCcccc
Confidence 111111111 111 122333222 22221 0111111 1356778888888888753
Q ss_pred C-----CccccccccccccCCchhhH
Q 000991 773 N-----ENLTVLGRNLSMLPVEPKLG 793 (1197)
Q Consensus 773 ~-----~~lT~LG~~ls~lPvdp~lg 793 (1197)
+ -..|.+|+.-+.+.+.-.-.
T Consensus 798 d~~s~~~~~telg~ias~yyi~~~s~ 823 (1674)
T KOG0951|consen 798 DRKSGAIQATELGRIASSYYITHGSM 823 (1674)
T ss_pred ccccCcccchhhccccceeeeecchH
Confidence 3 25899999999998855443
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.91 E-value=1.7e-23 Score=272.48 Aligned_cols=285 Identities=16% Similarity=0.172 Sum_probs=178.8
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHH
Q 000991 285 PEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE 364 (1197)
Q Consensus 285 ~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~ 364 (1197)
..+.++++..-....+..|...+..+..+++++++||||||||+. .++++..+. .++ .+++++.|||+||.|+++
T Consensus 67 ~~~~~~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~--~~g--~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 67 KEFEKFFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLA--KKG--KKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHH--hcC--CeEEEEeccHHHHHHHHH
Confidence 344455555544567788889999999999999999999999964 344433332 223 456666699999999999
Q ss_pred HHHHHhCCcccceeeeEeee------------ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCC---CC
Q 000991 365 RVAAERGEKLGESVGYKVRL------------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG---MN 429 (1197)
Q Consensus 365 rVa~e~g~~lg~~VGy~ir~------------e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~---~~ 429 (1197)
++.... ...+..+...... +.....+.+|+|+|||.|.+.+. .-....+++|||||||... -+
T Consensus 142 ~l~~l~-~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~~~k~ 219 (1176)
T PRK09401 142 KLEKFG-EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLKSSKN 219 (1176)
T ss_pred HHHHHh-hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhhcccc
Confidence 886543 3333222111100 01122458999999999998775 2244569999999999521 11
Q ss_pred h-----------hHHHHHHHHHcc---------------------cCccceEEEecccCCHHHHH-hhhCCCCccccCCc
Q 000991 430 E-----------DFLLIVLKELLP---------------------RRPELRLILMSATLNAELFS-SYFGGAPMLHIPGF 476 (1197)
Q Consensus 430 ~-----------D~Ll~lLr~ll~---------------------~r~~lklIlmSATl~~~~f~-~yf~~~pvi~i~gr 476 (1197)
. +-+..++..+-. ...+.+++++|||+++.... .+|...-.+.+...
T Consensus 220 id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 220 IDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSP 299 (1176)
T ss_pred hhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCc
Confidence 1 111112211110 01157899999999753221 12221100111110
Q ss_pred cc---ceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhcccc
Q 000991 477 TY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSC 553 (1197)
Q Consensus 477 ~~---PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~ 553 (1197)
.. .+...|..
T Consensus 300 ~~~~rnI~~~yi~------------------------------------------------------------------- 312 (1176)
T PRK09401 300 VFYLRNIVDSYIV------------------------------------------------------------------- 312 (1176)
T ss_pred ccccCCceEEEEE-------------------------------------------------------------------
Confidence 00 01111100
Q ss_pred CCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHH---HHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCC
Q 000991 554 WNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD---INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKP 630 (1197)
Q Consensus 554 ~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~e---i~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f 630 (1197)
.. + ....+..+++.. +..+||||++... ++.+++.|... ++.+..+||+| + +.++.|
T Consensus 313 --~~----~-k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~-------gi~v~~~hg~l----~-~~l~~F 372 (1176)
T PRK09401 313 --DE----D-SVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL-------GINAELAISGF----E-RKFEKF 372 (1176)
T ss_pred --cc----c-HHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC-------CCcEEEEeCcH----H-HHHHHH
Confidence 00 0 111222333333 2579999999777 99999999986 67899999999 2 235999
Q ss_pred CCCceEEEEe----ecccccccccCC-EEEEEeCCCCC
Q 000991 631 EDGVRKIVLA----TNMAETSITIND-VVFVIDCGKAK 663 (1197)
Q Consensus 631 ~~G~~kVLVA----TniaEtGIdIPd-V~~VId~G~~k 663 (1197)
++|+.+|||| ||+|++|||||+ |+|||++|.|+
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999999999 699999999999 89999999998
No 82
>PRK14701 reverse gyrase; Provisional
Probab=99.90 E-value=7.8e-23 Score=271.18 Aligned_cols=331 Identities=15% Similarity=0.088 Sum_probs=196.6
Q ss_pred cChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHH
Q 000991 283 ESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362 (1197)
Q Consensus 283 ~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qv 362 (1197)
.-..+.++++.-.....+..|.+++..+.++++++++||||||||+.+..+.+. .. .++ .+++++.|||+|+.|+
T Consensus 64 ~~~~~~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~-~~--~~g--~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 64 EVEEFEEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALF-LA--LKG--KKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHH-HH--hcC--CeEEEEECHHHHHHHH
Confidence 334444444432333566778888888999999999999999999843333222 11 223 3566666999999999
Q ss_pred HHHHHHHhCCccc--ceeeeEeee----------ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCC---
Q 000991 363 SERVAAERGEKLG--ESVGYKVRL----------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG--- 427 (1197)
Q Consensus 363 a~rVa~e~g~~lg--~~VGy~ir~----------e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~--- 427 (1197)
++.+.... ...+ ..+.+-... +.......+|+|+|||.|.+.+..- ...++++|||||||+..
T Consensus 139 ~~~l~~l~-~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 139 VEKIESFC-EKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KHLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHH-hhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hhCCCCEEEEECceeccccc
Confidence 99886643 2221 122211110 1112235799999999988765432 22679999999999641
Q ss_pred CC-------hhHHHHHHH----H---------------------Hccc-Cccce-EEEecccCCH-HHHHhhhCCCCccc
Q 000991 428 MN-------EDFLLIVLK----E---------------------LLPR-RPELR-LILMSATLNA-ELFSSYFGGAPMLH 472 (1197)
Q Consensus 428 ~~-------~D~Ll~lLr----~---------------------ll~~-r~~lk-lIlmSATl~~-~~f~~yf~~~pvi~ 472 (1197)
-+ .+|...+.. . .+.. ....+ ++++|||+++ .....+|...-.+.
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~ 296 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFE 296 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEE
Confidence 11 122222211 1 1111 12233 5779999964 33444553322222
Q ss_pred cCCccc---ceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhh
Q 000991 473 IPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQ 549 (1197)
Q Consensus 473 i~gr~~---PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~ 549 (1197)
+..... .+...|..
T Consensus 297 v~~~~~~lr~i~~~yi~--------------------------------------------------------------- 313 (1638)
T PRK14701 297 VGSGRSALRNIVDVYLN--------------------------------------------------------------- 313 (1638)
T ss_pred ecCCCCCCCCcEEEEEE---------------------------------------------------------------
Confidence 211110 01111100
Q ss_pred ccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHH---HHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHh
Q 000991 550 SLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD---INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLI 626 (1197)
Q Consensus 550 ~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~e---i~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v 626 (1197)
.+.+... .+..+++.. ...+||||++.+. ++.+++.|... ++.+..+||+ |..+
T Consensus 314 ---------~~~~~k~-~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~-------Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 314 ---------PEKIIKE-HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED-------GFKIELVSAK-----NKKG 370 (1638)
T ss_pred ---------CCHHHHH-HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC-------CCeEEEecch-----HHHH
Confidence 0000000 122333333 3578999999875 58999999986 7889999995 8889
Q ss_pred cCCCCCCceEEEEee----cccccccccCC-EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCe
Q 000991 627 FDKPEDGVRKIVLAT----NMAETSITIND-VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGE 700 (1197)
Q Consensus 627 ~~~f~~G~~kVLVAT----niaEtGIdIPd-V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~ 700 (1197)
++.|++|+.+||||| ++|++|||+|+ |+|||++|.||-.. ............|. .....++.|||||.+ ++.
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~-~~e~~~~~~~~~~~-~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRF-RVDLEDPTIYRILG-LLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCc-chhhcccchhhhhc-chHHHHHhhhhcccCCcch
Confidence 999999999999999 59999999999 99999999999321 11100000000011 233457889999996 677
Q ss_pred EEEecccc
Q 000991 701 CYHLYPRY 708 (1197)
Q Consensus 701 cy~Lys~~ 708 (1197)
|+..+...
T Consensus 449 ~~~~~~~~ 456 (1638)
T PRK14701 449 GVLDVFPE 456 (1638)
T ss_pred hHHHhHHH
Confidence 76444433
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=2.7e-22 Score=246.93 Aligned_cols=327 Identities=14% Similarity=0.164 Sum_probs=190.4
Q ss_pred hcCCCHHHHHHHHHHHHc-C--CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 295 RSLPSYKERDALLKAISE-N--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~-~--~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
....+..||++.+..+.. + +..||+.|||+|||.++...+.. + +..+.|+| |+..|+.|+.+.+.+..+
T Consensus 252 ~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----~k~tLILv--ps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----KKSCLVLC--TSAVSVEQWKQQFKMWST 323 (732)
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----CCCEEEEe--CcHHHHHHHHHHHHHhcC
Confidence 345567888888887764 3 36899999999999887654432 1 23445555 999999999999987654
Q ss_pred Ccccceee-eEeeeccccCCCceEEEEcchHHHHHHhcC-------CCC--CCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 372 EKLGESVG-YKVRLEGMKGRDTRLMFCTTGILLRRLLVD-------RSL--RGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 372 ~~lg~~VG-y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d-------~~L--~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
.... .+| |.-...........|+|+|..++....... ..+ ..+++||+||||. +.......++..+
T Consensus 324 l~~~-~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~--lpA~~fr~il~~l- 399 (732)
T TIGR00603 324 IDDS-QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV--VPAAMFRRVLTIV- 399 (732)
T ss_pred CCCc-eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc--ccHHHHHHHHHhc-
Confidence 3322 233 211111111124689999999875321111 122 4688999999996 3333333333333
Q ss_pred ccCccceEEEecccCC--HH---HHHhhhCCCCccccCCcccceeeeehHhHHHHh--hhccCcccccccchhhhhHHHH
Q 000991 442 PRRPELRLILMSATLN--AE---LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMT--RYRLNTYNQIDDYGQEKSWKMQ 514 (1197)
Q Consensus 442 ~~r~~lklIlmSATl~--~~---~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~--~~~l~~~~~i~~~~~e~~~~~~ 514 (1197)
.....++||||+- .+ .+..+|| ..+.. .+..++. ++... +.....+..-. ...
T Consensus 400 ---~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye-------------~~~~eLi~~G~LA~-~~~~ev~v~~t-~~~- 459 (732)
T TIGR00603 400 ---QAHCKLGLTATLVREDDKITDLNFLIG-PKLYE-------------ANWMELQKKGFIAN-VQCAEVWCPMT-PEF- 459 (732)
T ss_pred ---CcCcEEEEeecCcccCCchhhhhhhcC-Ceeee-------------cCHHHHHhCCcccc-ceEEEEEecCC-HHH-
Confidence 3335799999992 11 1222332 11111 1111111 11111 00000000000 000
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhh--cCCCcEEEEeCCHHHHHH
Q 000991 515 KQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK--ERPGAVLVFMTGWDDINS 592 (1197)
Q Consensus 515 ~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~--~~~g~iLVFl~~~~ei~~ 592 (1197)
...++.... .....+..+++ . +...+..+++. ..+.++|||+...+.+..
T Consensus 460 ----------------~~~yl~~~~------~~k~~l~~~np--~----K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~ 511 (732)
T TIGR00603 460 ----------------YREYLRENS------RKRMLLYVMNP--N----KFRACQFLIRFHEQRGDKIIVFSDNVFALKE 511 (732)
T ss_pred ----------------HHHHHHhcc------hhhhHHhhhCh--H----HHHHHHHHHHHHhhcCCeEEEEeCCHHHHHH
Confidence 000000000 00000011111 1 11222223222 256799999999999888
Q ss_pred HHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC-ceEEEEeecccccccccCCEEEEEeCCCCCcccccCCC
Q 000991 593 LKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-VRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALN 671 (1197)
Q Consensus 593 l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G-~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~ 671 (1197)
+++.|. +..+||+++..+|..+++.|+.| ..++||+|+++.+|||+|++++||....+
T Consensus 512 ~a~~L~------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~--------- 570 (732)
T TIGR00603 512 YAIKLG------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH--------- 570 (732)
T ss_pred HHHHcC------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC---------
Confidence 888773 23579999999999999999865 88999999999999999999999983322
Q ss_pred CCCCccccccCHhhHHhhhcccCCCCCC-eE-------EEeccccch
Q 000991 672 NTPCLLPSWISKAAARQRRGRAGRVQPG-EC-------YHLYPRYVY 710 (1197)
Q Consensus 672 ~~~~l~~~~iSkas~~QR~GRAGR~~~G-~c-------y~Lys~~~~ 710 (1197)
+-|+.+|.||.||++|.++| .+ |.|++++..
T Consensus 571 --------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 571 --------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred --------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 12788999999999999764 43 777776543
No 84
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=4.4e-23 Score=229.91 Aligned_cols=326 Identities=20% Similarity=0.201 Sum_probs=221.6
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 287 GQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 287 ~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
++.+.+.-..-|...||. .+..|.++++++-.+-||||||.++.+++++.+.... ....+.+++.|+|+||.|+.+-+
T Consensus 33 ~raI~kkg~~~ptpiqRK-TipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvv 110 (529)
T KOG0337|consen 33 LRAIHKKGFNTPTPIQRK-TIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVV 110 (529)
T ss_pred HHHHHHhhcCCCCchhcc-cccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHH
Confidence 444555545567665554 4556779999999999999999999999999987544 33456666669999999988755
Q ss_pred HHHhCCc----ccceeeeEeeec--cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHH
Q 000991 367 AAERGEK----LGESVGYKVRLE--GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKE 439 (1197)
Q Consensus 367 a~e~g~~----lg~~VGy~ir~e--~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ 439 (1197)
+++|.- ....+|+.--.+ .....+++|+++|||+++.....-. .|+.+.+||+||++ |-....|-..+-+.
T Consensus 111 -kdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~ 188 (529)
T KOG0337|consen 111 -KDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEI 188 (529)
T ss_pred -HHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHH
Confidence 444432 222344322111 1234689999999999987554322 68999999999999 33334343333333
Q ss_pred HcccCccceEEEecccCCHH--HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 440 LLPRRPELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 440 ll~~r~~lklIlmSATl~~~--~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
+-+...+.+.++||||++.. .|++ .|-..|+-+. ++ +-.
T Consensus 189 l~rl~~~~QTllfSatlp~~lv~fak----------aGl~~p~lVR-ld-vet--------------------------- 229 (529)
T KOG0337|consen 189 LSRLPESRQTLLFSATLPRDLVDFAK----------AGLVPPVLVR-LD-VET--------------------------- 229 (529)
T ss_pred HHhCCCcceEEEEeccCchhhHHHHH----------ccCCCCceEE-ee-hhh---------------------------
Confidence 33344567999999999755 2222 2444444433 11 000
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhc-CCCcEEEEeCCHHHHHHHHHH
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKE-RPGAVLVFMTGWDDINSLKDQ 596 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~-~~g~iLVFl~~~~ei~~l~~~ 596 (1197)
++.+.++... ..+..+.....|.+++... .+...+||+++..+++.+...
T Consensus 230 --------kise~lk~~f---------------------~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~l 280 (529)
T KOG0337|consen 230 --------KISELLKVRF---------------------FRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGL 280 (529)
T ss_pred --------hcchhhhhhe---------------------eeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHH
Confidence 0000000000 0011112233445555432 345799999999999999999
Q ss_pred HHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCc
Q 000991 597 LQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCL 676 (1197)
Q Consensus 597 L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l 676 (1197)
|... ++.+..++|+|.+..|..-+..|..++..++|.|++|++|+|||-..-||| ||.+.....+
T Consensus 281 l~~~-------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd~p~~~klF 345 (529)
T KOG0337|consen 281 LRDF-------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YDFPPDDKLF 345 (529)
T ss_pred HHhc-------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------ccCCCCCceE
Confidence 9886 555778899999999999999999999999999999999999999999999 4444444444
Q ss_pred cccccCHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 677 LPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 677 ~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
+ ||.||+.|.+ .|..|.+.....
T Consensus 346 v----------hRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 346 V----------HRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred E----------EEecchhhccccceEEEEEeccc
Confidence 4 9999999997 799999976543
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=9.7e-22 Score=256.44 Aligned_cols=283 Identities=19% Similarity=0.217 Sum_probs=175.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
..+........+..|...+..+..|++++++||||||||+ +.++++..+. .++ ++++++.|||+||.|+++.+..
T Consensus 69 ~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~--~~g--~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 69 EFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLA--KKG--KRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHH--hcC--CeEEEEeCHHHHHHHHHHHHHH
Confidence 3344334456777888888889999999999999999997 4444444332 223 4566667999999999998866
Q ss_pred HhCCcccc---eee-eEeee---------ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCC--------
Q 000991 369 ERGEKLGE---SVG-YKVRL---------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG-------- 427 (1197)
Q Consensus 369 e~g~~lg~---~VG-y~ir~---------e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~-------- 427 (1197)
... ..+. .+| |.... +.....+.+|+|+|||.|.+.+..-. .++++|||||||+..
T Consensus 144 l~~-~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~~L~~~k~vd~ 220 (1171)
T TIGR01054 144 LAE-KAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDALLKASKNVDK 220 (1171)
T ss_pred HHH-hcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHhhhhccccHHH
Confidence 542 1111 122 10000 11122358999999999988765311 189999999999531
Q ss_pred ------CChhHHHHHHHH------------------Hccc-Cccc--eEEEecccC-CHHHHHhhhCCCCccccCCccc-
Q 000991 428 ------MNEDFLLIVLKE------------------LLPR-RPEL--RLILMSATL-NAELFSSYFGGAPMLHIPGFTY- 478 (1197)
Q Consensus 428 ------~~~D~Ll~lLr~------------------ll~~-r~~l--klIlmSATl-~~~~f~~yf~~~pvi~i~gr~~- 478 (1197)
...+.+..++.. ++.. .... .++++|||. +...-..+|...-.+.+.....
T Consensus 221 il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~ 300 (1171)
T TIGR01054 221 LLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDT 300 (1171)
T ss_pred HHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCcccc
Confidence 111111111110 0111 1222 367789995 3321112232211111111000
Q ss_pred --ceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCC
Q 000991 479 --PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNP 556 (1197)
Q Consensus 479 --PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~ 556 (1197)
.+...|.. .
T Consensus 301 ~r~I~~~~~~---------------------------------------------------------------------~ 311 (1171)
T TIGR01054 301 LRNVVDVYVE---------------------------------------------------------------------D 311 (1171)
T ss_pred ccceEEEEEe---------------------------------------------------------------------c
Confidence 00011100 0
Q ss_pred CCCchhhHHHHHHHHHhhcCCCcEEEEeCCH---HHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC
Q 000991 557 DSIGFNLIEHVLCHIVKKERPGAVLVFMTGW---DDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG 633 (1197)
Q Consensus 557 ~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~---~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G 633 (1197)
.. . . ..+.++++.. ...+||||++. +.++.+++.|... ++.+..+||+++. .+++.|++|
T Consensus 312 ~~-~---~-~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~-------g~~a~~lhg~~~~----~~l~~Fr~G 374 (1171)
T TIGR01054 312 ED-L---K-ETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH-------GVKAVAYHATKPK----EDYEKFAEG 374 (1171)
T ss_pred cc-H---H-HHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC-------CceEEEEeCCCCH----HHHHHHHcC
Confidence 00 0 0 1122333332 35789999998 9999999999876 6789999999973 688999999
Q ss_pred ceEEEEe----ecccccccccCC-EEEEEeCCCCCcc
Q 000991 634 VRKIVLA----TNMAETSITIND-VVFVIDCGKAKET 665 (1197)
Q Consensus 634 ~~kVLVA----TniaEtGIdIPd-V~~VId~G~~k~~ 665 (1197)
+.+|||| |++|++|||||+ |+|||++|.|+..
T Consensus 375 ~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 375 EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred CCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 9999999 599999999999 8999999999864
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.88 E-value=1.8e-21 Score=243.94 Aligned_cols=357 Identities=18% Similarity=0.196 Sum_probs=199.1
Q ss_pred CCCHHHHHHHHHHHHc---CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 297 LPSYKERDALLKAISE---NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~---~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
...+..|+++++.+.+ ++++++.|+||||||.++.+.+.+.+. .| ..++++.|+++|+.|+.+++.+.+|..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---~g--~~vLvLvPt~~L~~Q~~~~l~~~fg~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---QG--KQALVLVPEIALTPQMLARFRARFGAP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH---cC--CeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 3456777788888876 488999999999999998877665442 23 356666699999999999999888765
Q ss_pred ccceeeeEeee------ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChh----H-HHHHHHHHcc
Q 000991 374 LGESVGYKVRL------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED----F-LLIVLKELLP 442 (1197)
Q Consensus 374 lg~~VGy~ir~------e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D----~-Ll~lLr~ll~ 442 (1197)
+....|..... ........+|+|+|++.+.. .+.++++|||||+|+-+...+ + ...+ .....
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~ra 290 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVRA 290 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHH-HHHHh
Confidence 54444321111 11123457999999987652 478899999999996543321 0 1111 11222
Q ss_pred cCccceEEEecccCCHHHHHhhhCC-CCccccCCcc----cc-eeeeehHhHHHHhhhccCcccccccchhhhhHHHHHH
Q 000991 443 RRPELRLILMSATLNAELFSSYFGG-APMLHIPGFT----YP-VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQ 516 (1197)
Q Consensus 443 ~r~~lklIlmSATl~~~~f~~yf~~-~pvi~i~gr~----~P-V~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~ 516 (1197)
...+.++|++|||+..+.+.....| ...+..+.+. .| +...-+.+ ...+ ....
T Consensus 291 ~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~--~~~~---~~~~---------------- 349 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRE--LLRG---ENGS---------------- 349 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechh--hhhh---cccC----------------
Confidence 3467889999999988876654332 1222222221 22 11111110 0000 0000
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcchhhhhh---hccccC-CC-----CCCchhh-----HHHHHHHHHhhcCCC----
Q 000991 517 ALALRKRKSSIASAVEDALEAADFREYSVQTQ---QSLSCW-NP-----DSIGFNL-----IEHVLCHIVKKERPG---- 578 (1197)
Q Consensus 517 ~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~---~~l~~~-~~-----~~i~~~l-----i~~ll~~i~~~~~~g---- 578 (1197)
.-...+.+.+++.+......-.-.... ..+.+- +. ...+..+ -..+.+|.|.....-
T Consensus 350 -----~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~C 424 (679)
T PRK05580 350 -----FLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKAC 424 (679)
T ss_pred -----CCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCC
Confidence 000011122222222110000000000 000000 00 0001111 011223333221110
Q ss_pred ---cEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCC--HHHHHHhcCCCCCCceEEEEeecccccccccCCE
Q 000991 579 ---AVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMA--SSEQRLIFDKPEDGVRKIVLATNMAETSITINDV 653 (1197)
Q Consensus 579 ---~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~--~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV 653 (1197)
.-..|.+....++++.+.|... + .+..+..+|+++. .++++.+++.|++|+..|||+|++++.|+|+|+|
T Consensus 425 p~Cg~~~l~~~g~G~e~~~e~l~~~--f---p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v 499 (679)
T PRK05580 425 PECGSTDLVPVGPGTERLEEELAEL--F---PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNV 499 (679)
T ss_pred CCCcCCeeEEeeccHHHHHHHHHHh--C---CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCc
Confidence 0012333334566777777664 1 2456889999986 4678899999999999999999999999999999
Q ss_pred EEE--EeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCC-CCCeEEEe
Q 000991 654 VFV--IDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHL 704 (1197)
Q Consensus 654 ~~V--Id~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~cy~L 704 (1197)
.+| +| .|...+.+.+...--.-..+.|++|||||. .+|.|+..
T Consensus 500 ~lV~il~--------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 500 TLVGVLD--------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred CEEEEEc--------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 988 45 333333333321111235678999999996 57888753
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.88 E-value=1.4e-21 Score=246.93 Aligned_cols=325 Identities=22% Similarity=0.231 Sum_probs=186.2
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh----C-
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER----G- 371 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~----g- 371 (1197)
...+..|+.+.+...+...+||.||||+|||.++..++. .+... +....|++..||+++++++++|+.+.. +
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~--~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQ--GLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHh--CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 345777777765545678899999999999988866554 33332 333468888899999999999997532 2
Q ss_pred CcccceeeeEe---ee------c---------------c-----ccCCCceEEEEcchHHHHHHhcCC--CCCC----cc
Q 000991 372 EKLGESVGYKV---RL------E---------------G-----MKGRDTRLMFCTTGILLRRLLVDR--SLRG----VT 416 (1197)
Q Consensus 372 ~~lg~~VGy~i---r~------e---------------~-----~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~----is 416 (1197)
..+....|... .+ + . +..--..|+|||...++......+ .+.. -+
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 12222222110 00 0 0 000126899999977775444332 2222 25
Q ss_pred EEEEecCCCCCCChh-HHHHHHHHHcccCccceEEEecccCCHHHHHhhh---CCCCccccCCcccceeeeehHhHHHHh
Q 000991 417 HVIVDEIHERGMNED-FLLIVLKELLPRRPELRLILMSATLNAELFSSYF---GGAPMLHIPGFTYPVRAYFLENILEMT 492 (1197)
Q Consensus 417 ~VIIDEaHeR~~~~D-~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf---~~~pvi~i~gr~~PV~~~yledi~~l~ 492 (1197)
+|||||||..+..+. ++..+++.+.. ...++|+||||++...-.+++ ++...+ .....||.-...-.. ...
T Consensus 442 vvIiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~-~~~~~YPlvt~~~~~--~~~ 516 (878)
T PRK09694 442 VLIVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPV-ELSSAYPLITWRGVN--GAQ 516 (878)
T ss_pred eEEEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccc-ccccccccccccccc--cce
Confidence 899999997554433 33344444322 356799999999865433332 222111 111123321100000 000
Q ss_pred hhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCC-CCCCchhhHHHHHHHH
Q 000991 493 RYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWN-PDSIGFNLIEHVLCHI 571 (1197)
Q Consensus 493 ~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~-~~~i~~~li~~ll~~i 571 (1197)
........ ........-.+..+. ....+ ...++..+
T Consensus 517 ~~~~~~~~----------------------------------------~~~~~~~~v~v~~~~~~~~~~---~~~~l~~i 553 (878)
T PRK09694 517 RFDLSAHP----------------------------------------EQLPARFTIQLEPICLADMLP---DLTLLQRM 553 (878)
T ss_pred eeeccccc----------------------------------------cccCcceEEEEEeeccccccC---HHHHHHHH
Confidence 00000000 000000000000000 00000 11222233
Q ss_pred Hhh-cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHH----HhcCCC-CCCc---eEEEEeec
Q 000991 572 VKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQR----LIFDKP-EDGV---RKIVLATN 642 (1197)
Q Consensus 572 ~~~-~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~----~v~~~f-~~G~---~kVLVATn 642 (1197)
.+. ..++++|||+|+++.++.+++.|+.. .+ ....+..+||.++..+|+ ++++.| ++|+ .+|||||+
T Consensus 554 ~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~--~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ 629 (878)
T PRK09694 554 IAAANAGAQVCLICNLVDDAQKLYQRLKEL--NN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ 629 (878)
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHHHHhh--CC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc
Confidence 222 34578999999999999999999864 11 135688999999999994 566677 6666 47999999
Q ss_pred ccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC
Q 000991 643 MAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ 697 (1197)
Q Consensus 643 iaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~ 697 (1197)
++|+|||| |++++|..- .+..++.||+||+||.+
T Consensus 630 ViE~GLDI-d~DvlItdl--------------------aPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 630 VVEQSLDL-DFDWLITQL--------------------CPVDLLFQRLGRLHRHH 663 (878)
T ss_pred chhheeec-CCCeEEECC--------------------CCHHHHHHHHhccCCCC
Confidence 99999999 578887511 23468889999999985
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.87 E-value=7.8e-21 Score=234.04 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=91.2
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccC---
Q 000991 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN--- 651 (1197)
Q Consensus 575 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIP--- 651 (1197)
....++||||++.+.++.+...|... ++....+||.+...++..+...++.| .|+||||+|++|+|||
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~-------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~ 492 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLRE-------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGK 492 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCc
Confidence 45679999999999999999999986 66788899999999999998888887 7999999999999999
Q ss_pred ------CEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 652 ------DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 652 ------dV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
++.+||+...|. .+.. .||+|||||.| +|.++.+++.+
T Consensus 493 ~v~~~GGL~vIit~~~ps------------------~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 493 GVAELGGLAVIGTERMEN------------------SRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred cccccCCeEEEEecCCCC------------------cHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 999999944443 2223 79999999997 79999888753
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.4e-20 Score=229.47 Aligned_cols=105 Identities=24% Similarity=0.240 Sum_probs=89.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccC---CE
Q 000991 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---DV 653 (1197)
Q Consensus 577 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIP---dV 653 (1197)
..++||||++.+.++.+++.|... ++.+..+||.+...++..+...+.. ..|+||||+|++|+||+ +|
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~-------gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V 543 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA-------GLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGV 543 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccch
Confidence 468999999999999999999986 6778999999876666655555444 46999999999999999 77
Q ss_pred E-----EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 654 V-----FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 654 ~-----~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
. +||++.+|. |...|.||+|||||.| +|.|+.+++.+
T Consensus 544 ~~~GGLhVI~~d~P~------------------s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 544 AARGGLHVILTERHD------------------SARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred hhcCCCEEEEcCCCC------------------CHHHHHHhcccccCCCCCeEEEEEechh
Confidence 6 999977776 6778889999999996 79999998863
No 90
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=7e-21 Score=236.56 Aligned_cols=107 Identities=24% Similarity=0.303 Sum_probs=95.5
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccccccccc---C
Q 000991 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITI---N 651 (1197)
Q Consensus 575 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdI---P 651 (1197)
....++||||++.+.++.+++.|... ++.+..+||.+...++..+...+..| .|+||||+|++|+|| |
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~-------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~ 496 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEA-------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGE 496 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCccc
Confidence 35679999999999999999999986 67788999999999998888888777 799999999999999 7
Q ss_pred CEE-----EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 652 DVV-----FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 652 dV~-----~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
+|. +||++.+|. |...|.||+|||||.| +|.|+.+++.+
T Consensus 497 ~V~~~GGL~VI~~d~p~------------------s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 497 GVHELGGLAVIGTERME------------------SRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred ccccccCcEEEeccCCC------------------CHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 998 999977776 7778899999999997 79999988753
No 91
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=1.3e-21 Score=217.60 Aligned_cols=321 Identities=20% Similarity=0.193 Sum_probs=200.4
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc--
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE-- 376 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~-- 376 (1197)
..-|.+++.-++..+++|.|+.|||+|||+++-++.|-+ .| .-||+.|..+|.......+... ..++..
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~g---ITIV~SPLiALIkDQiDHL~~L-KVp~~SLN 92 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GG---ITIVISPLIALIKDQIDHLKRL-KVPCESLN 92 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CC---eEEEehHHHHHHHHHHHHHHhc-CCchhHhc
Confidence 344567777888899999999999999999888877631 12 4566679999887665555321 111111
Q ss_pred -eeeeEeee----c-cccCCCceEEEEcchHHH--------HHHhcCCCCCCccEEEEecCCCCC-CChhHHHHHH--HH
Q 000991 377 -SVGYKVRL----E-GMKGRDTRLMFCTTGILL--------RRLLVDRSLRGVTHVIVDEIHERG-MNEDFLLIVL--KE 439 (1197)
Q Consensus 377 -~VGy~ir~----e-~~~~~~t~Ilv~Tpg~LL--------r~L~~d~~L~~is~VIIDEaHeR~-~~~D~Ll~lL--r~ 439 (1197)
...-+.|. + .....++.++|.||++.. +-|. .-.-++++||||+|+-+ +..||--..| -.
T Consensus 93 SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~---~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~ 169 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLA---NRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS 169 (641)
T ss_pred chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHh---hhceeeeEEechhhhHhhhccccCcchhhhhh
Confidence 00000010 0 112256899999997643 3332 23446899999999632 2223322222 23
Q ss_pred HcccCccceEEEecccCCHHHHHhhhC----CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHH
Q 000991 440 LLPRRPELRLILMSATLNAELFSSYFG----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQK 515 (1197)
Q Consensus 440 ll~~r~~lklIlmSATl~~~~f~~yf~----~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~ 515 (1197)
+....+++..|.++||.+++.-.+.|. ..|+-......|.-..+|-...
T Consensus 170 LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~--------------------------- 222 (641)
T KOG0352|consen 170 LRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHM--------------------------- 222 (641)
T ss_pred HHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHH---------------------------
Confidence 334567888999999998764443332 2232222222222222221100
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHH
Q 000991 516 QALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD 595 (1197)
Q Consensus 516 ~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~ 595 (1197)
.+.+++-+... .++.... |.+ +.. ..-..+.-.|.-||+|.|+++++.++-
T Consensus 223 ------------K~~I~D~~~~L--aDF~~~~---LG~--~~~----------~~~~~K~~~GCGIVYCRTR~~cEq~AI 273 (641)
T KOG0352|consen 223 ------------KSFITDCLTVL--ADFSSSN---LGK--HEK----------ASQNKKTFTGCGIVYCRTRNECEQVAI 273 (641)
T ss_pred ------------HHHhhhHhHhH--HHHHHHh---cCC--hhh----------hhcCCCCcCcceEEEeccHHHHHHHHH
Confidence 01111111000 0000000 000 000 000012235789999999999999999
Q ss_pred HHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCC
Q 000991 596 QLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPC 675 (1197)
Q Consensus 596 ~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~ 675 (1197)
.|... ++....+|+||...||.+|.+.+-+|+..||+||+...+|||-|+|++||+ ||+..
T Consensus 274 ~l~~~-------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~q---- 334 (641)
T KOG0352|consen 274 MLEIA-------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQ---- 334 (641)
T ss_pred Hhhhc-------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cCchh----
Confidence 99876 677889999999999999999999999999999999999999999999999 44433
Q ss_pred ccccccCHhhHHhhhcccCCCC-CCeEEEeccccchhh
Q 000991 676 LLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 676 l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
+-|-|.|-.|||||.| +..|-..|++.+-+.
T Consensus 335 ------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 335 ------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ------hhHHHHHhccccccCCCccceeeeecccchHH
Confidence 5567889999999997 577777788876554
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.87 E-value=1.3e-20 Score=225.91 Aligned_cols=326 Identities=17% Similarity=0.180 Sum_probs=194.5
Q ss_pred HhhcCCCHHHHHHHHHHHHc----CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 293 FRRSLPSYKERDALLKAISE----NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 293 ~R~~LPi~~~q~~Il~~I~~----~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
.........+|++.++++.+ ++..+|+.|||+|||..+...+.+ + ... ++|++||++|+.|.+++...
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~-----~~~--~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L-----KRS--TLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h-----cCC--EEEEECcHHHHHHHHHHHHH
Confidence 33456678899999999988 899999999999999777655543 1 122 55555999999999988877
Q ss_pred HhCCcccceeeeEeeeccccCCC-ceEEEEcchHHHHH-HhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCcc
Q 000991 369 ERGEKLGESVGYKVRLEGMKGRD-TRLMFCTTGILLRR-LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPE 446 (1197)
Q Consensus 369 e~g~~lg~~VGy~ir~e~~~~~~-t~Ilv~Tpg~LLr~-L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~ 446 (1197)
..+.. ..+|.-... ..... ..|+|+|...+.+. .........+++||+||||+.+. +....++..+...++
T Consensus 103 ~~~~~--~~~g~~~~~--~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a--~~~~~~~~~~~~~~~- 175 (442)
T COG1061 103 FLLLN--DEIGIYGGG--EKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA--PSYRRILELLSAAYP- 175 (442)
T ss_pred hcCCc--cccceecCc--eeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc--HHHHHHHHhhhcccc-
Confidence 76653 222311101 11112 57999999999885 22222344799999999997433 333333333333222
Q ss_pred ceEEEecccCC---HHHHHhhhCCC-C-ccccC-------CcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHH
Q 000991 447 LRLILMSATLN---AELFSSYFGGA-P-MLHIP-------GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQ 514 (1197)
Q Consensus 447 lklIlmSATl~---~~~f~~yf~~~-p-vi~i~-------gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~ 514 (1197)
+++||||+. ......+|... | +..+. |..-|......... ...+......
T Consensus 176 --~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~----------------~t~~~~~~~~ 237 (442)
T COG1061 176 --RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVT----------------LTEDEEREYA 237 (442)
T ss_pred --eeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEec----------------cchHHHHHhh
Confidence 999999972 12222222211 1 11111 22222221111000 0000000000
Q ss_pred HHHHHHHhh--hhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhc-CCCcEEEEeCCHHHHH
Q 000991 515 KQALALRKR--KSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKE-RPGAVLVFMTGWDDIN 591 (1197)
Q Consensus 515 ~~~~~~~~~--~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~-~~g~iLVFl~~~~ei~ 591 (1197)
+........ .... .......... ..........+..+.... ...+++||+....++.
T Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~ 297 (442)
T COG1061 238 KESARFRELLRARGT-LRAENEARRI-------------------AIASERKIAAVRGLLLKHARGDKTLIFASDVEHAY 297 (442)
T ss_pred hhhhhhhhhhhhhhh-hhHHHHHHHH-------------------hhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHH
Confidence 000000000 0000 0000000000 000001111222222222 4679999999999999
Q ss_pred HHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCC
Q 000991 592 SLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALN 671 (1197)
Q Consensus 592 ~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~ 671 (1197)
.++..+... +. +..+.+..+..+|..+++.|+.|.+++|+++.++.+|+|+|++.++|-..-..
T Consensus 298 ~i~~~~~~~-------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~-------- 361 (442)
T COG1061 298 EIAKLFLAP-------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG-------- 361 (442)
T ss_pred HHHHHhcCC-------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCC--------
Confidence 999998764 23 67889999999999999999999999999999999999999999999733333
Q ss_pred CCCCccccccCHhhHHhhhcccCCCC
Q 000991 672 NTPCLLPSWISKAAARQRRGRAGRVQ 697 (1197)
Q Consensus 672 ~~~~l~~~~iSkas~~QR~GRAGR~~ 697 (1197)
|+..|.||.||.-|..
T Consensus 362 ----------S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 362 ----------SRRLFIQRLGRGLRPA 377 (442)
T ss_pred ----------cHHHHHHHhhhhccCC
Confidence 8889999999999953
No 93
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.87 E-value=9.7e-21 Score=231.83 Aligned_cols=106 Identities=23% Similarity=0.255 Sum_probs=94.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCC---
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIND--- 652 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPd--- 652 (1197)
.+.|+||||++.+.++.+.+.|... ++....+|+. ..+|+..+..+..+...|+||||+|++|+||+.
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~-------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKER-------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 4679999999999999999999986 5667789998 778888999999999999999999999999998
Q ss_pred ----EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 653 ----VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 653 ----V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
..+||++.+|. |+..+.||+|||||.| ||.+..+++.+
T Consensus 475 ~~~GGl~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 475 KELGGLYVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred hhcCCcEEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEecc
Confidence 55999988776 7888999999999996 79998887764
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=2e-21 Score=235.69 Aligned_cols=297 Identities=18% Similarity=0.231 Sum_probs=175.1
Q ss_pred EEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEee------eccccCC
Q 000991 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVR------LEGMKGR 390 (1197)
Q Consensus 317 II~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir------~e~~~~~ 390 (1197)
++.|+||||||.++...+.+. +.. |. .++++.|+++|+.|+++++.+.++..+....|.... .......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~--g~--~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LAL--GK--SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHc--CC--eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC
Confidence 478999999999887665443 332 32 566667999999999999998887654333221100 0111234
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHH----HHHHHHHcccCccceEEEecccCCHHHHHhhhC
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFL----LIVLKELLPRRPELRLILMSATLNAELFSSYFG 466 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~L----l~lLr~ll~~r~~lklIlmSATl~~~~f~~yf~ 466 (1197)
+.+|+|+|+..+.. .+.++++|||||+|+-+...+-. ..-+..+.....+.++|++|||+..+.+.....
T Consensus 76 ~~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 76 EILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CCCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc
Confidence 57899999987642 47889999999999644322100 000111222346788999999998887765543
Q ss_pred CC-CccccC----CcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Q 000991 467 GA-PMLHIP----GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFR 541 (1197)
Q Consensus 467 ~~-pvi~i~----gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~ 541 (1197)
+. ..+.++ +...|. +..++ . ..+. .. ..-...+.+.+.+.+.
T Consensus 150 g~~~~~~l~~r~~~~~~p~-v~vid-~-----------------~~~~-~~--------~~ls~~l~~~i~~~l~----- 196 (505)
T TIGR00595 150 KAYRLLVLTRRVSGRKPPE-VKLID-M-----------------RKEP-RQ--------SFLSPELITAIEQTLA----- 196 (505)
T ss_pred CCeEEeechhhhcCCCCCe-EEEEe-c-----------------cccc-cc--------CCccHHHHHHHHHHHH-----
Confidence 32 111111 111111 11100 0 0000 00 0000001111111111
Q ss_pred chhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHH---------------------------------
Q 000991 542 EYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWD--------------------------------- 588 (1197)
Q Consensus 542 ~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~--------------------------------- 588 (1197)
.++++|||+|++.
T Consensus 197 ----------------------------------~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~ 242 (505)
T TIGR00595 197 ----------------------------------AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLR 242 (505)
T ss_pred ----------------------------------cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEE
Confidence 1234444444332
Q ss_pred ---------------------------HHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHH--HHhcCCCCCCceEEEE
Q 000991 589 ---------------------------DINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQ--RLIFDKPEDGVRKIVL 639 (1197)
Q Consensus 589 ---------------------------ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er--~~v~~~f~~G~~kVLV 639 (1197)
.++++.+.|... + ++..+..+|++++..++ +.+++.|++|+.+|||
T Consensus 243 Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~--f---p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILV 317 (505)
T TIGR00595 243 CHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL--F---PGARIARIDSDTTSRKGAHEALLNQFANGKADILI 317 (505)
T ss_pred cCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh--C---CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEE
Confidence 245566666653 1 24568899999987665 7899999999999999
Q ss_pred eecccccccccCCEEEE--EeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCC-CCCeEEEe
Q 000991 640 ATNMAETSITINDVVFV--IDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHL 704 (1197)
Q Consensus 640 ATniaEtGIdIPdV~~V--Id~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~cy~L 704 (1197)
+|++++.|+|+|+|+.| +| +|..-+.+.+...--.-..+.|++|||||. .+|.++..
T Consensus 318 gT~~i~kG~d~~~v~lV~vl~--------aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 318 GTQMIAKGHHFPNVTLVGVLD--------ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred eCcccccCCCCCcccEEEEEc--------CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 99999999999999987 46 343333333321112335678999999997 46888743
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.86 E-value=3.1e-20 Score=203.05 Aligned_cols=294 Identities=21% Similarity=0.318 Sum_probs=195.0
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC-CcccceeeeEe
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG-EKLGESVGYKV 382 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g-~~lg~~VGy~i 382 (1197)
..++..+.+.+..+|.|-||+|||..+-+.|-. ++. .+.+|.+..||...+.+++.|+.+-+. +.+....|
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~-al~----~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg--- 178 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQ-ALN----QGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG--- 178 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHH-HHh----cCCeEEEecCcccchHHHHHHHHHhhccCCeeeEec---
Confidence 566777889999999999999999776665543 332 234777888999999999999988775 44443333
Q ss_pred eeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHH-HHHHcccCccceEEEecccCCHHHH
Q 000991 383 RLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIV-LKELLPRRPELRLILMSATLNAELF 461 (1197)
Q Consensus 383 r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~l-Lr~ll~~r~~lklIlmSATl~~~~f 461 (1197)
++..--.+.++|||+-.|++. -+.++++|||||+.-....|-.+.. ++.. +.+.--+|.||||.+.+.-
T Consensus 179 --~S~~~fr~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~ 248 (441)
T COG4098 179 --DSDSYFRAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLE 248 (441)
T ss_pred --CCchhccccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHH
Confidence 222223489999999999984 4578999999999766555544433 3332 2245568999999876655
Q ss_pred HhhhCC-CCccccCCccc----ceeee-ehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 000991 462 SSYFGG-APMLHIPGFTY----PVRAY-FLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDAL 535 (1197)
Q Consensus 462 ~~yf~~-~pvi~i~gr~~----PV~~~-yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l 535 (1197)
.+...+ ...+.+|.|.+ |+..+ |..+ |+ ..+
T Consensus 249 r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~-----------------------~~--------------------k~l 285 (441)
T COG4098 249 RKILKGNLRILKLPARFHGKPLPVPKFVWIGN-----------------------WN--------------------KKL 285 (441)
T ss_pred HHhhhCCeeEeecchhhcCCCCCCCceEEecc-----------------------HH--------------------HHh
Confidence 554432 22344444332 22211 1110 00 000
Q ss_pred HhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhh-cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEec
Q 000991 536 EAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLAC 614 (1197)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~-~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~l 614 (1197)
.. ..+.. .++.++-++ ....++|||+|+.+..+.+++.|+..- ....+...
T Consensus 286 ~r-------------------~kl~~----kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-----~~~~i~~V 337 (441)
T COG4098 286 QR-------------------NKLPL----KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-----PKETIASV 337 (441)
T ss_pred hh-------------------ccCCH----HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-----Cccceeee
Confidence 00 00000 122222222 235799999999999999999996531 23457788
Q ss_pred cCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccC
Q 000991 615 HGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAG 694 (1197)
Q Consensus 615 Hs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAG 694 (1197)
||. ...|.+..+.|++|+.+|||+|.|+|+|+|+|+|+++|- ++... . .|.++..|.+||+|
T Consensus 338 hs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gaeh~---v----fTesaLVQIaGRvG 399 (441)
T COG4098 338 HSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL---------GAEHR---V----FTESALVQIAGRVG 399 (441)
T ss_pred ecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe---------cCCcc---c----ccHHHHHHHhhhcc
Confidence 886 356778888999999999999999999999999998763 11111 1 28899999999999
Q ss_pred CC--CC-CeEEEe
Q 000991 695 RV--QP-GECYHL 704 (1197)
Q Consensus 695 R~--~~-G~cy~L 704 (1197)
|. .| |..+.+
T Consensus 400 Rs~~~PtGdv~FF 412 (441)
T COG4098 400 RSLERPTGDVLFF 412 (441)
T ss_pred CCCcCCCCcEEEE
Confidence 98 33 665444
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=1e-20 Score=229.47 Aligned_cols=344 Identities=18% Similarity=0.224 Sum_probs=208.0
Q ss_pred CCHHHHHHHH--HHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 298 PSYKERDALL--KAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 298 Pi~~~q~~Il--~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
-.|..|.+-+ ..+.++.+.|.+.||+.|||+++.+.++...+...+. ++.+.|-...+..-......+ ...+|
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~----~llilp~vsiv~Ek~~~l~~~-~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRN----VLLILPYVSIVQEKISALSPF-SIDLG 297 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhc----eeEecceeehhHHHHhhhhhh-ccccC
Confidence 3444444443 3356899999999999999999999999888765442 222225544444433333222 22333
Q ss_pred cee-eeEeeeccc-cCCCceEEEEcchH---HHHHHhcCCCCCCccEEEEecCC-----CCCCChhHHHHHHHHHcccCc
Q 000991 376 ESV-GYKVRLEGM-KGRDTRLMFCTTGI---LLRRLLVDRSLRGVTHVIVDEIH-----ERGMNEDFLLIVLKELLPRRP 445 (1197)
Q Consensus 376 ~~V-Gy~ir~e~~-~~~~t~Ilv~Tpg~---LLr~L~~d~~L~~is~VIIDEaH-----eR~~~~D~Ll~lLr~ll~~r~ 445 (1197)
-.| +|..++... ..+...+.+||.++ |.+.|.....+..+..|||||.| +||...+.++.-+... ....
T Consensus 298 ~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~-~~~~ 376 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE-NLET 376 (1008)
T ss_pred CcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh-cccc
Confidence 322 233233222 22457899999865 45666666678899999999999 4655544443322111 1223
Q ss_pred cceEEEecccC-CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhh
Q 000991 446 ELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1197)
Q Consensus 446 ~lklIlmSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 524 (1197)
.+++|+||||+ |.+.+++||+. .+....-|+.|...+.. .+.. + +... .
T Consensus 377 ~~~iIGMSATi~N~~lL~~~L~A-~~y~t~fRPv~L~E~ik------~G~~------i--~~~~---------------r 426 (1008)
T KOG0950|consen 377 SVQIIGMSATIPNNSLLQDWLDA-FVYTTRFRPVPLKEYIK------PGSL------I--YESS---------------R 426 (1008)
T ss_pred ceeEeeeecccCChHHHHHHhhh-hheecccCcccchhccC------CCcc------c--ccch---------------h
Confidence 47899999999 89999999972 22222222222222110 0000 0 0000 0
Q ss_pred hhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcC----
Q 000991 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH---- 600 (1197)
Q Consensus 525 ~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~---- 600 (1197)
......+..... ..+...+| |.+..+...... .+..+|||||++..++.++..+...
T Consensus 427 ~~~lr~ia~l~~------------~~~g~~dp-----D~~v~L~tet~~--e~~~~lvfc~sk~~ce~~a~~~~~~vpk~ 487 (1008)
T KOG0950|consen 427 NKVLREIANLYS------------SNLGDEDP-----DHLVGLCTETAP--EGSSVLVFCPSKKNCENVASLIAKKVPKH 487 (1008)
T ss_pred hHHHHHhhhhhh------------hhcccCCC-----cceeeehhhhhh--cCCeEEEEcCcccchHHHHHHHHHHhhHh
Confidence 000000000000 00000111 122222222211 2345999999999999887655321
Q ss_pred ----CCCC-----------------------CCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCE
Q 000991 601 ----PLLG-----------------------DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDV 653 (1197)
Q Consensus 601 ----~~~~-----------------------~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV 653 (1197)
...+ ..-.+.+.+||+|++.++|+.|...|+.|...|++||++++.|++.|..
T Consensus 488 ~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPAr 567 (1008)
T KOG0950|consen 488 IKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPAR 567 (1008)
T ss_pred hhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcc
Confidence 0000 0123568999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccch
Q 000991 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVY 710 (1197)
Q Consensus 654 ~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~ 710 (1197)
+++|.+-. +....+++.+|+||.|||||.| -|.++.++.+...
T Consensus 568 RVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 568 RVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred eeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 99996322 2345578999999999999996 4999999876543
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.85 E-value=4e-20 Score=239.79 Aligned_cols=352 Identities=16% Similarity=0.243 Sum_probs=197.6
Q ss_pred CCCHHHHHHHHHHHH-----cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 297 LPSYKERDALLKAIS-----ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~-----~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
+....+|.+.+..+. ..+.++|+++||||||..+...+ ..++... ...+|++++||++|+.|..+.+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~--~~~rVLfLvDR~~L~~Qa~~~F~~~~- 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAK--RFRRILFLVDRSALGEQAEDAFKDTK- 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcC--ccCeEEEEecHHHHHHHHHHHHHhcc-
Confidence 445667777666553 24678999999999996655443 4444332 33578888899999999998876542
Q ss_pred Cccccee-e-eEee--eccccCCCceEEEEcchHHHHHHhcC------CCCCCccEEEEecCCCCCCChh-------H--
Q 000991 372 EKLGESV-G-YKVR--LEGMKGRDTRLMFCTTGILLRRLLVD------RSLRGVTHVIVDEIHERGMNED-------F-- 432 (1197)
Q Consensus 372 ~~lg~~V-G-y~ir--~e~~~~~~t~Ilv~Tpg~LLr~L~~d------~~L~~is~VIIDEaHeR~~~~D-------~-- 432 (1197)
...+..+ + |.+. .+.....+.+|+|+|.+.+.+.+... ..+..+++||||||| |+...| .
T Consensus 488 ~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQF 566 (1123)
T ss_pred cccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhcc
Confidence 1111110 0 1111 11122345899999999988775421 256789999999999 654211 0
Q ss_pred -----HHHHHHHHcccCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccC--cccccc--
Q 000991 433 -----LLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLN--TYNQID-- 503 (1197)
Q Consensus 433 -----Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~--~~~~i~-- 503 (1197)
...-.+.++.. .+..+|+||||+.. ...++||. | +..|.+++.++ -++... ++..+.
T Consensus 567 ~~~~~~~~~yr~iL~y-FdA~~IGLTATP~r-~t~~~FG~-p----------v~~Ysl~eAI~-DG~Lv~~~~p~~i~t~ 632 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDY-FDAVKIGLTATPAL-HTTEIFGE-P----------VYTYSYREAVI-DGYLIDHEPPIRIETR 632 (1123)
T ss_pred chhhhHHHHHHHHHhh-cCccEEEEecCCcc-chhHHhCC-e----------eEEeeHHHHHh-cCCcccCcCCEEEEEE
Confidence 12334555543 35678999999853 23567763 2 33333332221 111110 000000
Q ss_pred --cc----h-hh--hhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhH-HHHHHHHHh
Q 000991 504 --DY----G-QE--KSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLI-EHVLCHIVK 573 (1197)
Q Consensus 504 --~~----~-~e--~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li-~~ll~~i~~ 573 (1197)
.. . .+ ..+... ..... .....+.+.-... .+... ...++. ...+ ..++.++ .
T Consensus 633 ~~~~gi~~~~~e~~~~~~~~--~~~i~--~~~l~d~~~~~~~-----~~~~~------vi~~~~--~~~i~~~l~~~l-~ 694 (1123)
T PRK11448 633 LSQEGIHFEKGEEVEVINTQ--TGEID--LATLEDEVDFEVE-----DFNRR------VITESF--NRVVCEELAKYL-D 694 (1123)
T ss_pred eccccccccccchhhhcchh--hhhhh--hccCcHHHhhhHH-----HHHHH------HhhHHH--HHHHHHHHHHHH-h
Confidence 00 0 00 000000 00000 0000000000000 00000 000000 0111 2233333 3
Q ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHcCC--CCCCCCceEEEeccCCCCHHHHHHhcCCCCCCce-EEEEeeccccccccc
Q 000991 574 KERPGAVLVFMTGWDDINSLKDQLQAHP--LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR-KIVLATNMAETSITI 650 (1197)
Q Consensus 574 ~~~~g~iLVFl~~~~ei~~l~~~L~~~~--~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~-kVLVATniaEtGIdI 650 (1197)
...++++||||.+.++++.+++.|.... ..+......+..+||+.+ ++..+++.|+++.. +|+|+++++.||+|+
T Consensus 695 ~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~Dv 772 (1123)
T PRK11448 695 PTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDV 772 (1123)
T ss_pred ccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCc
Confidence 3345899999999999999998887531 011112234556888875 45678999998876 799999999999999
Q ss_pred CCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC--CeE-EEec
Q 000991 651 NDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP--GEC-YHLY 705 (1197)
Q Consensus 651 PdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~--G~c-y~Ly 705 (1197)
|.|.+||....++ |+..|.||+||+.|..+ |+- +.+|
T Consensus 773 P~v~~vVf~rpvk------------------S~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 773 PSICNLVFLRRVR------------------SRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred ccccEEEEecCCC------------------CHHHHHHHHhhhccCCccCCCceEEEE
Confidence 9999999855554 88899999999999977 443 4444
No 98
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.85 E-value=4.7e-21 Score=241.23 Aligned_cols=312 Identities=16% Similarity=0.160 Sum_probs=204.3
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeE
Q 000991 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYK 381 (1197)
Q Consensus 302 ~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ 381 (1197)
-|.+++.+++.|++++|..|||.||++++.++.+- . .+..||+.|...|...+...+ ...+......-+-+
T Consensus 268 ~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------~--~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~s~q 338 (941)
T KOG0351|consen 268 NQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL------L--GGVTVVISPLISLMQDQVTHL-SKKGIPACFLSSIQ 338 (941)
T ss_pred hHHHHHHHHHcCCceEEEeecCCceeeEeeccccc------c--CCceEEeccHHHHHHHHHHhh-hhcCcceeeccccc
Confidence 35666669999999999999999999877666542 1 125677779999987666555 22222211111111
Q ss_pred ee------eccccC--CCceEEEEcchHHHHHH---hcCCCCCC---ccEEEEecCCCCC-CChhHH--HHHHHHHcccC
Q 000991 382 VR------LEGMKG--RDTRLMFCTTGILLRRL---LVDRSLRG---VTHVIVDEIHERG-MNEDFL--LIVLKELLPRR 444 (1197)
Q Consensus 382 ir------~e~~~~--~~t~Ilv~Tpg~LLr~L---~~d~~L~~---is~VIIDEaHeR~-~~~D~L--l~lLr~ll~~r 444 (1197)
.. +..... ...+|+|.||+.+...- .....|.. +..+||||||+-+ +-.||- ...+..+..+.
T Consensus 339 ~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~ 418 (941)
T KOG0351|consen 339 TAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRF 418 (941)
T ss_pred cHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhC
Confidence 11 111122 25799999998875311 11113444 8999999999632 222332 22233444566
Q ss_pred ccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhh
Q 000991 445 PELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1197)
Q Consensus 445 ~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 524 (1197)
+.+.+|.+|||.+...-. |+++..+-.-.. ..
T Consensus 419 ~~vP~iALTATAT~~v~~------------------------DIi~~L~l~~~~--~~---------------------- 450 (941)
T KOG0351|consen 419 PGVPFIALTATATERVRE------------------------DVIRSLGLRNPE--LF---------------------- 450 (941)
T ss_pred CCCCeEEeehhccHHHHH------------------------HHHHHhCCCCcc--ee----------------------
Confidence 778899999998654221 122111100000 00
Q ss_pred hhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCC
Q 000991 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG 604 (1197)
Q Consensus 525 ~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~ 604 (1197)
...... ....|+... . .+.+....++..+-...+.+.+||+|.++.+++.+...|...
T Consensus 451 -------~~sfnR-~NL~yeV~~---------k-~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~---- 508 (941)
T KOG0351|consen 451 -------KSSFNR-PNLKYEVSP---------K-TDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL---- 508 (941)
T ss_pred -------cccCCC-CCceEEEEe---------c-cCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh----
Confidence 000000 000000000 0 001112233444445567889999999999999999999986
Q ss_pred CCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHh
Q 000991 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1197)
Q Consensus 605 ~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSka 684 (1197)
+....++|+||+..+|+.|-+.|-.++++||+||=.+.+|||-|||++||++++|| |-.
T Consensus 509 ---~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk------------------s~E 567 (941)
T KOG0351|consen 509 ---GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK------------------SFE 567 (941)
T ss_pred ---chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch------------------hHH
Confidence 46688999999999999999999999999999999999999999999999999999 777
Q ss_pred hHHhhhcccCCCC-CCeEEEeccccchhhh
Q 000991 685 AARQRRGRAGRVQ-PGECYHLYPRYVYDAF 713 (1197)
Q Consensus 685 s~~QR~GRAGR~~-~G~cy~Lys~~~~~~l 713 (1197)
.|.|-+|||||.| +-.|..+|.-.++..+
T Consensus 568 ~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 568 GYYQEAGRAGRDGLPSSCVLLYGYADISEL 597 (941)
T ss_pred HHHHhccccCcCCCcceeEEecchhHHHHH
Confidence 9999999999996 7899999988776554
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.83 E-value=3.4e-20 Score=221.16 Aligned_cols=309 Identities=20% Similarity=0.305 Sum_probs=204.1
Q ss_pred HHHHhhcCC--CHHHHHHHHHHHHcC------CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHH
Q 000991 290 MLEFRRSLP--SYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMA 361 (1197)
Q Consensus 290 ~~~~R~~LP--i~~~q~~Il~~I~~~------~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~q 361 (1197)
+.++...|| +...|+.+++-|... -+=++.|.-|||||.++.+.++..+. .|. .+...+||-+||.|
T Consensus 252 ~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~--Q~ALMAPTEILA~Q 326 (677)
T COG1200 252 LAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGY--QAALMAPTEILAEQ 326 (677)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCC--eeEEeccHHHHHHH
Confidence 344445555 355566666655431 23478999999999999988887653 233 34455599999999
Q ss_pred HHHHHHHHhCCcccceeeeEe----------eeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChh
Q 000991 362 VSERVAAERGEKLGESVGYKV----------RLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED 431 (1197)
Q Consensus 362 va~rVa~e~g~~lg~~VGy~i----------r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D 431 (1197)
.++.+++.+. ++|..|++-+ ..+...+...+|+|+|...+- .+-.+.++.+|||||=|..|+...
T Consensus 327 H~~~~~~~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQHRFGV~QR 401 (677)
T COG1200 327 HYESLRKWLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DKVEFHNLGLVIIDEQHRFGVHQR 401 (677)
T ss_pred HHHHHHHHhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----cceeecceeEEEEeccccccHHHH
Confidence 9999887764 2333343222 123344567899999986432 233789999999999997665543
Q ss_pred HHHHHHHHHcccCc-cceEEEecccC-CHHHHHhhhCCCCccc---cCCcccceeeeehHhHHHHhhhccCcccccccch
Q 000991 432 FLLIVLKELLPRRP-ELRLILMSATL-NAELFSSYFGGAPMLH---IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYG 506 (1197)
Q Consensus 432 ~Ll~lLr~ll~~r~-~lklIlmSATl-~~~~f~~yf~~~pvi~---i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~ 506 (1197)
.. | ..+.. .+.++.||||+ +-..--..|++-.+-. .|.-.-|+..+.+.+
T Consensus 402 ~~---L---~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~------------------- 456 (677)
T COG1200 402 LA---L---REKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPH------------------- 456 (677)
T ss_pred HH---H---HHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEecc-------------------
Confidence 22 1 12233 56899999998 4444445666543333 333334665554421
Q ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCC
Q 000991 507 QEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTG 586 (1197)
Q Consensus 507 ~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~ 586 (1197)
.+...+.+.+... +. .+..+.|-||=
T Consensus 457 ---------------~~~~~v~e~i~~e-------------------------------------i~--~GrQaY~VcPL 482 (677)
T COG1200 457 ---------------ERRPEVYERIREE-------------------------------------IA--KGRQAYVVCPL 482 (677)
T ss_pred ---------------ccHHHHHHHHHHH-------------------------------------HH--cCCEEEEEecc
Confidence 0000111111111 11 34577777776
Q ss_pred HHH--------HHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEe
Q 000991 587 WDD--------INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVID 658 (1197)
Q Consensus 587 ~~e--------i~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId 658 (1197)
.++ +..+++.|... + .++.|..+||.|+++|+.+|++.|++|+.+|+|||.+.|-|||+|+.++.|.
T Consensus 483 IeESE~l~l~~a~~~~~~L~~~--~---~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 483 IEESEKLELQAAEELYEELKSF--L---PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred ccccccchhhhHHHHHHHHHHH--c---ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 654 44566666632 2 2567999999999999999999999999999999999999999999999776
Q ss_pred CCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 659 CGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 659 ~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
+|+.+ .--|+..|-+||.||-. +..|+.+|....
T Consensus 558 --------e~AER---------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 558 --------ENAER---------FGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred --------echhh---------hhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 44332 24567789999999984 799999987543
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.82 E-value=1.7e-18 Score=216.85 Aligned_cols=297 Identities=19% Similarity=0.259 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHH----cCC--eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 300 YKERDALLKAIS----ENQ--VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 300 ~~~q~~Il~~I~----~~~--vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
..-|...++.|. +++ +=+|||.-|-|||.++.-++..... .| ..|.|++||.+||.|.++.+.+.+. .
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---~G--KQVAvLVPTTlLA~QHy~tFkeRF~-~ 669 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---DG--KQVAVLVPTTLLAQQHYETFKERFA-G 669 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---CC--CeEEEEcccHHhHHHHHHHHHHHhc-C
Confidence 344555555553 232 4589999999999999888876553 23 3455556999999999999987763 3
Q ss_pred ccceeeeEeeecc----------ccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc
Q 000991 374 LGESVGYKVRLEG----------MKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1197)
Q Consensus 374 lg~~VGy~ir~e~----------~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~ 443 (1197)
.+..|+.-.|+.+ ......+|+|+|.- .|..+-.++++.++||||-|.-|+..--- +...
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEqRFGVk~KEk------LK~L 739 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQRFGVKHKEK------LKEL 739 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCCcEEecCCeEEEechhhcCccHHHH------HHHH
Confidence 4445554444432 23356899999974 34455578999999999999877765322 2223
Q ss_pred CccceEEEecccCCHHHHHhhhCC---CCcccc-CCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHH
Q 000991 444 RPELRLILMSATLNAELFSSYFGG---APMLHI-PGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALA 519 (1197)
Q Consensus 444 r~~lklIlmSATl~~~~f~~yf~~---~pvi~i-~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~ 519 (1197)
+.++-++-||||+=+..+.=-+.| -.+|.. |...+||..+..+.-
T Consensus 740 r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d------------------------------- 788 (1139)
T COG1197 740 RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYD------------------------------- 788 (1139)
T ss_pred hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCC-------------------------------
Confidence 478889999999833332211212 123332 334567776654310
Q ss_pred HHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHc
Q 000991 520 LRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQA 599 (1197)
Q Consensus 520 ~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~ 599 (1197)
...+.++ ++.++ ..+|.+..-.|..++|+.+++.|+.
T Consensus 789 --------~~~ireA--------------------------------I~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~ 825 (1139)
T COG1197 789 --------DLLIREA--------------------------------ILREL---LRGGQVFYVHNRVESIEKKAERLRE 825 (1139)
T ss_pred --------hHHHHHH--------------------------------HHHHH---hcCCEEEEEecchhhHHHHHHHHHH
Confidence 0111111 22222 3578999889999999999999998
Q ss_pred CCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccc
Q 000991 600 HPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPS 679 (1197)
Q Consensus 600 ~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~ 679 (1197)
. -+...|...||.|+..+-+.++..|-+|...|||||.|.|+|||||+++.+|- .+ .+.+
T Consensus 826 L-----VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~----AD~f--- 885 (1139)
T COG1197 826 L-----VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ER----ADKF--- 885 (1139)
T ss_pred h-----CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ec----cccc---
Confidence 6 23566899999999999999999999999999999999999999999998875 11 1111
Q ss_pred ccCHhhHHhhhcccCCC-CCCeEEEecccc
Q 000991 680 WISKAAARQRRGRAGRV-QPGECYHLYPRY 708 (1197)
Q Consensus 680 ~iSkas~~QR~GRAGR~-~~G~cy~Lys~~ 708 (1197)
--++..|-+||.||. ..|.||.||+..
T Consensus 886 --GLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 886 --GLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred --cHHHHHHhccccCCccceEEEEEeecCc
Confidence 345778999999999 579999999864
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.79 E-value=1.2e-17 Score=212.65 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCC--CceEEEEee
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED--GVRKIVLAT 641 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~--G~~kVLVAT 641 (1197)
....+..+++.....++||||.++..+..+.+.|... .++.+..+||+|+..+|.++++.|.. |..+|+|||
T Consensus 480 Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsT 553 (956)
T PRK04914 480 RVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS 553 (956)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEec
Confidence 4445566666666789999999999999999999542 16778899999999999999999987 469999999
Q ss_pred cccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC-Ce--EEEeccc
Q 000991 642 NMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-GE--CYHLYPR 707 (1197)
Q Consensus 642 niaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~-G~--cy~Lys~ 707 (1197)
+++++|+|++.+++||++++|. +...|.||+||+||.|. |. +|.++.+
T Consensus 554 dvgseGlNlq~a~~VInfDlP~------------------nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 554 EIGSEGRNFQFASHLVLFDLPF------------------NPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred hhhccCCCcccccEEEEecCCC------------------CHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 9999999999999999955554 55677899999999964 33 3444444
No 102
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.77 E-value=6.8e-18 Score=185.20 Aligned_cols=271 Identities=18% Similarity=0.170 Sum_probs=172.9
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeE
Q 000991 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYK 381 (1197)
Q Consensus 302 ~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ 381 (1197)
.|.+.+.+...+.++++..|||.|||+++.++.|- ..+...++| |...|.....-.+ +.+|......-.-.
T Consensus 98 lq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------adg~alvi~--plislmedqil~l-kqlgi~as~lnans 168 (695)
T KOG0353|consen 98 LQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------ADGFALVIC--PLISLMEDQILQL-KQLGIDASMLNANS 168 (695)
T ss_pred hHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh------cCCceEeec--hhHHHHHHHHHHH-HHhCcchhhccCcc
Confidence 36777888889999999999999999988887763 123445555 9888776544333 22333211110000
Q ss_pred e-----eec---cccCCCceEEEEcchHHH------HHHhcCCCCCCccEEEEecCCCC-----CCChhH-HHHHHHHHc
Q 000991 382 V-----RLE---GMKGRDTRLMFCTTGILL------RRLLVDRSLRGVTHVIVDEIHER-----GMNEDF-LLIVLKELL 441 (1197)
Q Consensus 382 i-----r~e---~~~~~~t~Ilv~Tpg~LL------r~L~~d~~L~~is~VIIDEaHeR-----~~~~D~-Ll~lLr~ll 441 (1197)
. +.+ .......+++|.||+.+. +.|...-....+..|-|||+|+- +...|+ .+.+|+
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk--- 245 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK--- 245 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH---
Confidence 0 001 112345789999998774 23332224567889999999962 223332 334444
Q ss_pred ccCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhh--------ccCcccccccchhhhhHHH
Q 000991 442 PRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRY--------RLNTYNQIDDYGQEKSWKM 513 (1197)
Q Consensus 442 ~~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~--------~l~~~~~i~~~~~e~~~~~ 513 (1197)
+..++..+|+++||.....+ +|..++..- .++.++.. |.
T Consensus 246 rqf~~~~iigltatatn~vl------------------------~d~k~il~ie~~~tf~a~fnr~nl~--ye------- 292 (695)
T KOG0353|consen 246 RQFKGAPIIGLTATATNHVL------------------------DDAKDILCIEAAFTFRAGFNRPNLK--YE------- 292 (695)
T ss_pred HhCCCCceeeeehhhhcchh------------------------hHHHHHHhHHhhheeecccCCCCce--eE-------
Confidence 35678889999999743321 111111100 00000000 00
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHH
Q 000991 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSL 593 (1197)
Q Consensus 514 ~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l 593 (1197)
.+.+.. ..-+-++++...|-....+..-+|+|-++.+++.+
T Consensus 293 ------v~qkp~---------------------------------n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekv 333 (695)
T KOG0353|consen 293 ------VRQKPG---------------------------------NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKV 333 (695)
T ss_pred ------eeeCCC---------------------------------ChHHHHHHHHHHhccccCCCcceEEEeccccHHHH
Confidence 000000 00112233333333334455779999999999999
Q ss_pred HHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCC
Q 000991 594 KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1197)
Q Consensus 594 ~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k 663 (1197)
+..|+.+ ++....+|+.|.++++.-+-+.+-.|++.|||||-...+|||-|||++||+-.+||
T Consensus 334 a~alkn~-------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 334 AKALKNH-------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred HHHHHhc-------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 9999988 67788999999999999999999999999999999999999999999999988888
No 103
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.77 E-value=3.1e-19 Score=174.89 Aligned_cols=106 Identities=30% Similarity=0.515 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCCCCCCC-------CCCCCCCCHHHHHHHHHhccCCCccccccccccceeEeecC-CEEEEecCCcCCC
Q 000991 887 KQFLFLLKDAGLVDRNTE-------NCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMED-GQVLLYSNSVNAG 958 (1197)
Q Consensus 887 ~ql~~~l~~~gl~~~~~~-------~~n~~s~~~~lira~L~aGlypnva~~~~~~~~~~~~t~~~-~~v~iHPsSv~~~ 958 (1197)
+||.++|++.|++..+.. ..+.++.++.+|+++||+|||||||+.. +...|+|..+ ..|+|||+|++++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~---~~~~y~~~~~~~~v~iHPsS~l~~ 77 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRD---NKGSYKTLSNGQPVFIHPSSVLFK 77 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE----TTSSEEETTTG-EEEE-TTSTTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeC---CCCCEEEecCCCEEEEecCccccc
Confidence 599999999999865431 1122235679999999999999999765 2346998844 4699999999965
Q ss_pred CCCCCCCEEEEEeeeeccccccccCCCCChHHHHHhhCcc
Q 000991 959 VPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNI 998 (1197)
Q Consensus 959 ~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~~LlLFgg~~ 998 (1197)
. +++||||+|+++|++.|||+||+|+|.||++|||++
T Consensus 78 ~---~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 78 K---PPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp T---T-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred c---ccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 3 468999999999999999999999999999999974
No 104
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.76 E-value=7.6e-19 Score=195.58 Aligned_cols=302 Identities=17% Similarity=0.186 Sum_probs=179.9
Q ss_pred EEEecchHHHHHHHHHHHHHHHhCC----ccc--ceee-eEeeec-cccCCCceEEEEcchHHHHHHhcCC-CCCCccEE
Q 000991 348 SIICTQPRRISAMAVSERVAAERGE----KLG--ESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHV 418 (1197)
Q Consensus 348 ~IivtqPrR~LA~qva~rVa~e~g~----~lg--~~VG-y~ir~e-~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~V 418 (1197)
..+++.|.|++|.|+...+.+..-- .+. ..+| ...|.. +.....++|+|+|||+|++.+.... .+....++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 4677789999999999877554311 111 1122 111111 1123579999999999999887665 68889999
Q ss_pred EEecCCCC-C-CChhHHHHHHHHHcc---cCccceEEEecccCCHHHHHhhhCCCCccccCCc--ccceeeeeh-HhHHH
Q 000991 419 IVDEIHER-G-MNEDFLLIVLKELLP---RRPELRLILMSATLNAELFSSYFGGAPMLHIPGF--TYPVRAYFL-ENILE 490 (1197)
Q Consensus 419 IIDEaHeR-~-~~~D~Ll~lLr~ll~---~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr--~~PV~~~yl-edi~~ 490 (1197)
|+||++-. + .++|++..+-..+-. .-..++.+++|||+..-. +..+..+ -||.-+..- +|.+.
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~fe---------Vkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFE---------VKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEE---------eeehhhhhccCceeEecccccccc
Confidence 99999942 2 456666555444433 223578999999984210 1111111 122221110 00000
Q ss_pred HhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHH-----
Q 000991 491 MTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIE----- 565 (1197)
Q Consensus 491 l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~----- 565 (1197)
-+-... .....-..+..|... .+.+.... ..+.+.+..........+.-.
T Consensus 439 etvHhv---v~lv~p~~d~sw~~l-----------------r~~i~td~-----vh~kdn~~pg~~Spe~~s~a~kilkg 493 (725)
T KOG0349|consen 439 ETVHHV---VKLVCPSVDGSWCDL-----------------RQFIETDK-----VHTKDNLLPGQVSPENPSSATKILKG 493 (725)
T ss_pred hhhccc---eeecCCccCccHHHH-----------------hhhhccCC-----cccccccccccCCCCChhhhhHHhcC
Confidence 000000 000000011112111 11111100 000000000000000001111
Q ss_pred -HHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc
Q 000991 566 -HVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1197)
Q Consensus 566 -~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia 644 (1197)
.-+..| +.....+.+|||.++.++..+.+++.+.. ...+.+..+||+..+.||+.-++.|+.+..+.+|||++|
T Consensus 494 Ey~v~ai-~~h~mdkaiifcrtk~dcDnLer~~~qkg----g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdva 568 (725)
T KOG0349|consen 494 EYGVVAI-RRHAMDKAIIFCRTKQDCDNLERMMNQKG----GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVA 568 (725)
T ss_pred chhhhhh-hhhccCceEEEEeccccchHHHHHHHHcC----CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhh
Confidence 112222 33446789999999999999999998752 236789999999999999999999999999999999999
Q ss_pred ccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCC-CCCeEEEecc
Q 000991 645 ETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYHLYP 706 (1197)
Q Consensus 645 EtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~cy~Lys 706 (1197)
++||||-++-|+||.-+|. .+.+|.||+||.||. +-|.++.|..
T Consensus 569 argldi~g~p~~invtlpd------------------~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 569 ARGLDITGLPFMINVTLPD------------------DKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred hccccccCCceEEEEecCc------------------ccchhhhhhhccchhhhcceeEEEee
Confidence 9999999999999977776 566899999999999 5688888853
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.74 E-value=6.4e-17 Score=204.99 Aligned_cols=314 Identities=23% Similarity=0.212 Sum_probs=182.1
Q ss_pred CCHHHHHHHHHHHHc---CC-eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 298 PSYKERDALLKAISE---NQ-VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~---~~-vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
+.+..|..+++.+.. .+ .+++.||||+|||++...+.+...... .....+++++.|.|.++.++++++....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 445556666666543 45 899999999999999888777655432 2256789999999999999999998765432
Q ss_pred c--cc-eeeeEee---ecc-------------ccCCCceEEEEcchHHHHHHhcCCCC-----CCccEEEEecCCCCCCC
Q 000991 374 L--GE-SVGYKVR---LEG-------------MKGRDTRLMFCTTGILLRRLLVDRSL-----RGVTHVIVDEIHERGMN 429 (1197)
Q Consensus 374 l--g~-~VGy~ir---~e~-------------~~~~~t~Ilv~Tpg~LLr~L~~d~~L-----~~is~VIIDEaHeR~~~ 429 (1197)
. +. ..|.... .+. ....-..+.++||-..+......... -..+++|+||+|-..-+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 2 22 1221100 000 00001123333332222211111111 13589999999964333
Q ss_pred --hhHHHHHHHHHcccCccceEEEecccCCHHH---HHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCccccccc
Q 000991 430 --EDFLLIVLKELLPRRPELRLILMSATLNAEL---FSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDD 504 (1197)
Q Consensus 430 --~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~---f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~ 504 (1197)
.-+++.++..+. .-+.++|+||||++... |.++++....+...-...|.. +.
T Consensus 354 ~~~~~l~~~i~~l~--~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------~e 410 (733)
T COG1203 354 TMLAALLALLEALA--EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKE---------------------DE 410 (733)
T ss_pred chHHHHHHHHHHHH--hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccc---------------------cc
Confidence 223333333332 24778999999997642 333332211110000000000 00
Q ss_pred chhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEe
Q 000991 505 YGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFM 584 (1197)
Q Consensus 505 ~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl 584 (1197)
.. ..++.. ..+++... .. ....+. ..-...+++||-+
T Consensus 411 ~~--------------~~~~~~--~~~~~~~~------------------------~~-~~~~~~--~~~~~~~kvlvI~ 447 (733)
T COG1203 411 PG--------------LKRKER--VDVEDGPQ------------------------EE-LIELIS--EEVKEGKKVLVIV 447 (733)
T ss_pred cc--------------cccccc--hhhhhhhh------------------------Hh-hhhcch--hhhccCCcEEEEE
Confidence 00 000000 00000000 00 000111 1123568999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCC----CCCceEEEEeecccccccccCCEEEEEeCC
Q 000991 585 TGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKP----EDGVRKIVLATNMAETSITINDVVFVIDCG 660 (1197)
Q Consensus 585 ~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f----~~G~~kVLVATniaEtGIdIPdV~~VId~G 660 (1197)
||.+.+.++++.|+.... .+..+||.+...+|.+.++.. ..+.-.|+|||.+.|.|+||+ .+++|
T Consensus 448 NTV~~Aie~Y~~Lk~~~~-------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--- 516 (733)
T COG1203 448 NTVDRAIELYEKLKEKGP-------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI--- 516 (733)
T ss_pred ecHHHHHHHHHHHHhcCC-------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee---
Confidence 999999999999998621 588999999999998877632 456788999999999999995 77776
Q ss_pred CCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEecc
Q 000991 661 KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYP 706 (1197)
Q Consensus 661 ~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys 706 (1197)
+...+-.+..||+||++|.+ +|..|..-.
T Consensus 517 -----------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 517 -----------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred -----------------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 44556678889999999998 466665533
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=4.5e-16 Score=193.44 Aligned_cols=126 Identities=20% Similarity=0.134 Sum_probs=89.0
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
|+.|-...+--+++-++.=++--|..++||+|||+++.++++..++. |.. +.|+.|++.||.|.++.+.... ..
T Consensus 76 ~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~--V~VvTpn~yLA~qd~e~m~~l~-~~ 149 (896)
T PRK13104 76 LRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---GRG--VHIVTVNDYLAKRDSQWMKPIY-EF 149 (896)
T ss_pred HHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---CCC--EEEEcCCHHHHHHHHHHHHHHh-cc
Confidence 34455555555666666656666889999999999999999977653 233 4455699999999998775543 34
Q ss_pred ccceeeeEeeec----cccCCCceEEEEcchHH-HHHHhcCC--CC-----CCccEEEEecCCC
Q 000991 374 LGESVGYKVRLE----GMKGRDTRLMFCTTGIL-LRRLLVDR--SL-----RGVTHVIVDEIHE 425 (1197)
Q Consensus 374 lg~~VGy~ir~e----~~~~~~t~Ilv~Tpg~L-Lr~L~~d~--~L-----~~is~VIIDEaHe 425 (1197)
+|..||.-+... ......++|+|+|||.| ++.|.... .+ ..+.++||||||.
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 566666433221 11223589999999999 88887653 22 5899999999994
No 107
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=4.6e-17 Score=171.43 Aligned_cols=168 Identities=19% Similarity=0.206 Sum_probs=113.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHH---
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER--- 365 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~r--- 365 (1197)
.+..--..-|...|++.|.++|. |-+|+..|..|-|||..+.+..|+.+. .-.+.+.++|.-.||+||-|+.+.
T Consensus 56 aivdcgfehpsevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqie--pv~g~vsvlvmchtrelafqi~~ey~r 132 (387)
T KOG0329|consen 56 AIVDCGFEHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIE--PVDGQVSVLVMCHTRELAFQISKEYER 132 (387)
T ss_pred HHHhccCCCchHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcC--CCCCeEEEEEEeccHHHHHHHHHHHHH
Confidence 34444455688888888888885 678899999999999988888887663 233466777777999999999754
Q ss_pred HHHHhC-Ccccceee-eEeeecc-ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 366 VAAERG-EKLGESVG-YKVRLEG-MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 366 Va~e~g-~~lg~~VG-y~ir~e~-~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
+++++- .++....| ..|..+. ....-++|+|+|||+++.+..+.. .|+++.|.|+|||+..--..|....+-....
T Consensus 133 fskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr 212 (387)
T KOG0329|consen 133 FSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR 212 (387)
T ss_pred HHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhh
Confidence 444432 22222222 3332221 112367999999999999887665 7999999999999953222333333322222
Q ss_pred ccCccceEEEecccCCHH
Q 000991 442 PRRPELRLILMSATLNAE 459 (1197)
Q Consensus 442 ~~r~~lklIlmSATl~~~ 459 (1197)
....+-|+..+|||++.+
T Consensus 213 ~tp~~KQvmmfsatlske 230 (387)
T KOG0329|consen 213 MTPHEKQVMMFSATLSKE 230 (387)
T ss_pred cCcccceeeeeeeecchh
Confidence 334567889999999655
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.68 E-value=1.8e-16 Score=165.02 Aligned_cols=153 Identities=22% Similarity=0.264 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeee
Q 000991 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1197)
Q Consensus 301 ~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy 380 (1197)
..|.++++.+.++++++|.||||||||+.+..+++..+.+. ....++++.|+++++.|+.+++...++..-.....+
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeecccccccccccccccccccccccccc
Confidence 56888899888999999999999999999999999877542 334677777999999999999987776521111111
Q ss_pred ----Eee--eccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCC--hhHHHHHHHHHcccCccceEEE
Q 000991 381 ----KVR--LEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMN--EDFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 381 ----~ir--~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~--~D~Ll~lLr~ll~~r~~lklIl 451 (1197)
... .......+++|+|+||+.|++.+.... .+.++++|||||+|+.+.. .+.+..+++. +...++.++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~i~ 157 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQIIL 157 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcEEE
Confidence 000 001112468999999999999888643 5666999999999974332 2223333333 33334789999
Q ss_pred ecccCC
Q 000991 452 MSATLN 457 (1197)
Q Consensus 452 mSATl~ 457 (1197)
||||++
T Consensus 158 ~SAT~~ 163 (169)
T PF00270_consen 158 LSATLP 163 (169)
T ss_dssp EESSST
T ss_pred EeeCCC
Confidence 999998
No 109
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.7e-15 Score=187.67 Aligned_cols=107 Identities=24% Similarity=0.315 Sum_probs=94.9
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccC---
Q 000991 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN--- 651 (1197)
Q Consensus 575 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIP--- 651 (1197)
....|+||||++....+.+++.|... ++....+|+.+...|+..+-..+++|. |+||||+|++|+||+
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~-------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~ 508 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA-------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGP 508 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCc
Confidence 35679999999999999999999986 566788999999889888988888887 999999999999994
Q ss_pred CEE-----EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 652 DVV-----FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 652 dV~-----~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
+|. +||++.+|. |+..+.||+|||||.| ||.+..+++-+
T Consensus 509 ~V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 509 GVKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred chhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 899 999977776 7778899999999996 79998887755
No 110
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.67 E-value=4e-16 Score=167.96 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC---ccc
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE---KLG 375 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~---~lg 375 (1197)
.+.+|.+++..+.+++++++++|||+|||..+.+++++.+.........+++++.|+++|+.|+++.+...... .+.
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~ 101 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV 101 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEE
Confidence 56778888888888999999999999999999999998887642234456777779999999999887665322 222
Q ss_pred ceee-eEeeec-cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 376 ESVG-YKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 376 ~~VG-y~ir~e-~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
...| .....+ .....+++|+||||+.|++.+.... .+.++++||+||+|+.+ +..+...+...+....++.++++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 180 (203)
T cd00268 102 VIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFEDQIREILKLLPKDRQTLLF 180 (203)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChHHHHHHHHHhCCcccEEEEE
Confidence 2222 111001 1112368999999999999887665 67899999999999632 222222221111122357899999
Q ss_pred cccCCH
Q 000991 453 SATLNA 458 (1197)
Q Consensus 453 SATl~~ 458 (1197)
|||++.
T Consensus 181 SAT~~~ 186 (203)
T cd00268 181 SATMPK 186 (203)
T ss_pred eccCCH
Confidence 999963
No 111
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=8.8e-15 Score=182.07 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=86.1
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCC--
Q 000991 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIND-- 652 (1197)
Q Consensus 575 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPd-- 652 (1197)
....|+||||.+.+.++.+++.|... ++....+||. ..+|+..+..|..|...|+||||+|++|+||+=
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~-------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgG 498 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKA-------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGG 498 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC-------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCC
Confidence 35679999999999999999999986 5678889995 778999999999999999999999999999972
Q ss_pred ------------------------------------EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCC
Q 000991 653 ------------------------------------VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV 696 (1197)
Q Consensus 653 ------------------------------------V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~ 696 (1197)
=-+||-+.++. |+.-=.|-+|||||.
T Consensus 499 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhe------------------srRid~QlrGRagRQ 560 (830)
T PRK12904 499 NPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE------------------SRRIDNQLRGRSGRQ 560 (830)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCc------------------hHHHHHHhhcccccC
Confidence 12455444443 555566999999999
Q ss_pred C-CCeEEEeccc
Q 000991 697 Q-PGECYHLYPR 707 (1197)
Q Consensus 697 ~-~G~cy~Lys~ 707 (1197)
| ||.+-.+.+-
T Consensus 561 GdpGss~f~lSl 572 (830)
T PRK12904 561 GDPGSSRFYLSL 572 (830)
T ss_pred CCCCceeEEEEc
Confidence 7 7887666554
No 112
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.67 E-value=9.2e-17 Score=154.20 Aligned_cols=92 Identities=53% Similarity=0.849 Sum_probs=69.4
Q ss_pred HHHHHHHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHHH--HHHh
Q 000991 759 NAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAE--SAKA 836 (1197)
Q Consensus 759 ~Al~~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~--~~r~ 836 (1197)
+|++.|+.+||||.+++||++|+.|+.||++|++||||++|..++|++++++|||+|++++||..|.++++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999876554433 2444
Q ss_pred hc--------ccCChhhHHHHH
Q 000991 837 QF--------SARDYSDHLALV 850 (1197)
Q Consensus 837 ~f--------~~~~~SDhl~~l 850 (1197)
+| ..+..|||++++
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 44 247889999986
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.65 E-value=3.7e-15 Score=180.23 Aligned_cols=370 Identities=18% Similarity=0.230 Sum_probs=196.3
Q ss_pred HHHHHc-CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeec
Q 000991 307 LKAISE-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLE 385 (1197)
Q Consensus 307 l~~I~~-~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e 385 (1197)
.+++.+ ++-++++..||+|||..+.++| +.++.. +...+|++++-|++|+.|....+...+-. +..+- .-.+
T Consensus 178 ~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~--~~~KRVLFLaDR~~Lv~QA~~af~~~~P~--~~~~n--~i~~ 250 (875)
T COG4096 178 IEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKS--GWVKRVLFLADRNALVDQAYGAFEDFLPF--GTKMN--KIED 250 (875)
T ss_pred HHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhc--chhheeeEEechHHHHHHHHHHHHHhCCC--cccee--eeec
Confidence 334443 4458999999999997776554 444432 34568999999999999988776655421 11111 1111
Q ss_pred cccCCCceEEEEcchHHHHHHhcC-C-----CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHH
Q 000991 386 GMKGRDTRLMFCTTGILLRRLLVD-R-----SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAE 459 (1197)
Q Consensus 386 ~~~~~~t~Ilv~Tpg~LLr~L~~d-~-----~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~ 459 (1197)
......++|.++|...+...+... . ....+++||||||| ||+..+.- .++.-+ +.-.++++||+...
T Consensus 251 ~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYF-----dA~~~gLTATP~~~ 323 (875)
T COG4096 251 KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYF-----DAATQGLTATPKET 323 (875)
T ss_pred ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHH-----HHHHHhhccCcccc
Confidence 222236799999999888776544 1 34569999999999 88766533 222221 11245559998431
Q ss_pred ---HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccc--cccchhhhhHHHHHHHHHHHhhhhhhHHHHHHH
Q 000991 460 ---LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQ--IDDYGQEKSWKMQKQALALRKRKSSIASAVEDA 534 (1197)
Q Consensus 460 ---~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~--i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~ 534 (1197)
.=..||+|.|+ ..|.+++.+. +..+-++.. +........|+..... .+.....+.+.
T Consensus 324 ~d~~T~~~F~g~Pt----------~~YsleeAV~--DGfLvpy~vi~i~~~~~~~G~~~~~~s----erek~~g~~i~-- 385 (875)
T COG4096 324 IDRSTYGFFNGEPT----------YAYSLEEAVE--DGFLVPYKVIRIDTDFDLDGWKPDAGS----EREKLQGEAID-- 385 (875)
T ss_pred cccccccccCCCcc----------eeecHHHHhh--ccccCCCCceEEeeeccccCcCcCccc----hhhhhhccccC--
Confidence 23357755443 3333333211 111111110 0000000000000000 00000000000
Q ss_pred HHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhh--cC--CCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceE
Q 000991 535 LEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK--ER--PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVL 610 (1197)
Q Consensus 535 l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~--~~--~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~ 610 (1197)
. +-..|... .+..-..-.-..+.+...+.+.+.. .. .+++||||.+.++++.+.+.|.....- ..+-.
T Consensus 386 --~-dd~~~~~~---d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype--~~~~~ 457 (875)
T COG4096 386 --E-DDQNFEAR---DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE--YNGRY 457 (875)
T ss_pred --c-cccccccc---ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc--ccCce
Confidence 0 00000000 0000000011223455556666655 22 579999999999999999999875221 12222
Q ss_pred EEeccCCCCHHHHHHhcCCC--CCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHh
Q 000991 611 LLACHGSMASSEQRLIFDKP--EDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQ 688 (1197)
Q Consensus 611 I~~lHs~L~~~er~~v~~~f--~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~Q 688 (1197)
+..+.|.-... |..| +.| ++..-+|.++.+++.||||+|.|..+|-.-..+ |+.-|+|
T Consensus 458 a~~IT~d~~~~-q~~I-d~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr------------------SktkF~Q 517 (875)
T COG4096 458 AMKITGDAEQA-QALI-DNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR------------------SKTKFKQ 517 (875)
T ss_pred EEEEeccchhh-HHHH-HHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh------------------hHHHHHH
Confidence 44444443322 2222 222 344568999999999999999999988544443 9999999
Q ss_pred hhcccCCCCC--C-----eE-EEecc---ccchhhhhhcCCccccccchhhhhHHhhhc
Q 000991 689 RRGRAGRVQP--G-----EC-YHLYP---RYVYDAFADYQLPELLRTPLQSLCLQIKSL 736 (1197)
Q Consensus 689 R~GRAGR~~~--G-----~c-y~Lys---~~~~~~l~~~~~PEIlr~~L~~l~L~lk~l 736 (1197)
|+||+-|..+ | +- |.+|. -..|-.+.....++-.+.+++.=++.....
T Consensus 518 MvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~~~~~ 576 (875)
T COG4096 518 MVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFADRLF 576 (875)
T ss_pred HhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhhhhhc
Confidence 9999999854 3 33 33332 112223444445555555555444443333
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.65 E-value=1.8e-14 Score=181.13 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=92.0
Q ss_pred hcCCCHHHHHHHHHHH---Hc------CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHH
Q 000991 295 RSLPSYKERDALLKAI---SE------NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I---~~------~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~r 365 (1197)
+.+|.+.|..++-.++ .+ .+..+|+.+||||||..+...+ ..++.. ....+|++++||+.|..|+.+.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~--~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALEL--LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhh--cCCCeEEEEECcHHHHHHHHHH
Confidence 4456666655554443 32 3578999999999996665444 333322 2345788778999999999998
Q ss_pred HHHHhCCcccceeeeEeee-ccccCCCceEEEEcchHHHHHHhcC--C-CCCCc-cEEEEecCCCCCCChhHHHHHHHHH
Q 000991 366 VAAERGEKLGESVGYKVRL-EGMKGRDTRLMFCTTGILLRRLLVD--R-SLRGV-THVIVDEIHERGMNEDFLLIVLKEL 440 (1197)
Q Consensus 366 Va~e~g~~lg~~VGy~ir~-e~~~~~~t~Ilv~Tpg~LLr~L~~d--~-~L~~i-s~VIIDEaHeR~~~~D~Ll~lLr~l 440 (1197)
+.......+ ..++..-.+ .........|+|+|.+.+.+.+... + ....- .+||+|||| |+...++. ..++.
T Consensus 313 f~~~~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~-~~l~~- 388 (667)
T TIGR00348 313 FQSLQKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA-KNLKK- 388 (667)
T ss_pred HHhhCCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH-HHHHh-
Confidence 866532111 111110001 1112234689999999997644321 1 11111 289999999 65544432 33332
Q ss_pred cccCccceEEEecccC
Q 000991 441 LPRRPELRLILMSATL 456 (1197)
Q Consensus 441 l~~r~~lklIlmSATl 456 (1197)
..|+...++||||+
T Consensus 389 --~~p~a~~lGfTaTP 402 (667)
T TIGR00348 389 --ALKNASFFGFTGTP 402 (667)
T ss_pred --hCCCCcEEEEeCCC
Confidence 33677899999998
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=6.6e-14 Score=173.83 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=86.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccC-C--
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN-D-- 652 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIP-d-- 652 (1197)
.+.+|||||.+.+..+.++..|... ++....+|+..+..|+..|.+.+++|. |+||||+|.+|+||- +
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~-------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn 518 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKE-------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGN 518 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCc
Confidence 4579999999999999999999986 666788999999999999999999998 999999999999996 1
Q ss_pred ----------------------------------EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-
Q 000991 653 ----------------------------------VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ- 697 (1197)
Q Consensus 653 ----------------------------------V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~- 697 (1197)
=-+||-+.++. |+.-=.|-+|||||.|
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGD 580 (908)
T PRK13107 519 WNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHE------------------SRRIDNQLRGRAGRQGD 580 (908)
T ss_pred hHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCc------------------hHHHHhhhhcccccCCC
Confidence 12455444443 4444569999999997
Q ss_pred CCeEEEeccc
Q 000991 698 PGECYHLYPR 707 (1197)
Q Consensus 698 ~G~cy~Lys~ 707 (1197)
||.+-.+.|-
T Consensus 581 PGss~f~lSl 590 (908)
T PRK13107 581 AGSSRFYLSM 590 (908)
T ss_pred CCceeEEEEe
Confidence 7887666554
No 116
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1.3e-13 Score=171.46 Aligned_cols=124 Identities=19% Similarity=0.137 Sum_probs=90.7
Q ss_pred cCC--CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 296 SLP--SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 296 ~LP--i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
..| ...++.+++..+..++.+|+.++||+|||+++.++++..++. +.. ++++.|+++||.|+++.+... +..
T Consensus 88 ~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---g~~--v~IVTpTrELA~Qdae~m~~L-~k~ 161 (970)
T PRK12899 88 HQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---GKP--VHLVTVNDYLAQRDCEWVGSV-LRW 161 (970)
T ss_pred cCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---cCC--eEEEeCCHHHHHHHHHHHHHH-Hhh
Confidence 356 778889999999999999999999999999999999987763 222 344459999999999876543 333
Q ss_pred ccceeeeEeeec----cccCCCceEEEEcchHH-HHHHhcCC-CC-------CCccEEEEecCCC
Q 000991 374 LGESVGYKVRLE----GMKGRDTRLMFCTTGIL-LRRLLVDR-SL-------RGVTHVIVDEIHE 425 (1197)
Q Consensus 374 lg~~VGy~ir~e----~~~~~~t~Ilv~Tpg~L-Lr~L~~d~-~L-------~~is~VIIDEaHe 425 (1197)
+|..+|.-+... ......++|+|+|||.| +++|.... .+ ..+.++|||||+.
T Consensus 162 lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 162 LGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 444444322111 11123589999999999 88887653 33 3568999999993
No 117
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.54 E-value=6.6e-13 Score=162.88 Aligned_cols=288 Identities=22% Similarity=0.270 Sum_probs=184.4
Q ss_pred HhcChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHH
Q 000991 281 WQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM 360 (1197)
Q Consensus 281 ~~~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~ 360 (1197)
|..-..+.+..+.--..+.|..|......+..|+..-|.||||.||||-...+.+-. +.+|..+.||+ ||+.|+.
T Consensus 65 ~~e~e~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~---a~kgkr~yii~--PT~~Lv~ 139 (1187)
T COG1110 65 LWEYEEFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL---AKKGKRVYIIV--PTTTLVR 139 (1187)
T ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH---HhcCCeEEEEe--cCHHHHH
Confidence 333334445555555578999999999999999999999999999998765554432 34555555655 9999999
Q ss_pred HHHHHHHHHhCCccc---ceeeeEeee---------ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCC---
Q 000991 361 AVSERVAAERGEKLG---ESVGYKVRL---------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE--- 425 (1197)
Q Consensus 361 qva~rVa~e~g~~lg---~~VGy~ir~---------e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe--- 425 (1197)
|+++++.... +..+ ..++|.... +...+.+.+|+|+|.+.|......=.. -++++|+||+|+.
T Consensus 140 Q~~~kl~~~~-e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 140 QVYERLKKFA-EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHH-hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHh
Confidence 9999996643 2222 222243322 223345789999999988765532111 3689999999992
Q ss_pred CCCChhHHHHHH----------------HHHc----------------------ccCccceEEEecccCCH-----HHHH
Q 000991 426 RGMNEDFLLIVL----------------KELL----------------------PRRPELRLILMSATLNA-----ELFS 462 (1197)
Q Consensus 426 R~~~~D~Ll~lL----------------r~ll----------------------~~r~~lklIlmSATl~~-----~~f~ 462 (1197)
.+-+.|-++.++ +.-+ .+...-.+|.+|||..+ ..|.
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 333444333221 1111 11233568999999843 2344
Q ss_pred hhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcc
Q 000991 463 SYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFRE 542 (1197)
Q Consensus 463 ~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~ 542 (1197)
+.+|=. +.+ ...++.++ +|.|..
T Consensus 298 eLlgFe----vG~-----~~~~LRNI-------------vD~y~~----------------------------------- 320 (1187)
T COG1110 298 ELLGFE----VGS-----GGEGLRNI-------------VDIYVE----------------------------------- 320 (1187)
T ss_pred HHhCCc----cCc-----cchhhhhe-------------eeeecc-----------------------------------
Confidence 433300 000 00011110 000000
Q ss_pred hhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCC---HHHHHHHHHHHHcCCCCCCCCceEEEeccCCCC
Q 000991 543 YSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTG---WDDINSLKDQLQAHPLLGDPSRVLLLACHGSMA 619 (1197)
Q Consensus 543 ~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~---~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~ 619 (1197)
. +.+.. +..+++.... ..|||+|. ++.++++++.|+.+ ++.+...|+.
T Consensus 321 --------------~----~~~e~-~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~-------Gi~a~~~~a~-- 371 (1187)
T COG1110 321 --------------S----ESLEK-VVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSH-------GINAELIHAE-- 371 (1187)
T ss_pred --------------C----ccHHH-HHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhc-------CceEEEeecc--
Confidence 0 11111 2223333333 57999998 89999999999987 7778888873
Q ss_pred HHHHHHhcCCCCCCceEEEEee----cccccccccC-CEEEEEeCCCCCc
Q 000991 620 SSEQRLIFDKPEDGVRKIVLAT----NMAETSITIN-DVVFVIDCGKAKE 664 (1197)
Q Consensus 620 ~~er~~v~~~f~~G~~kVLVAT----niaEtGIdIP-dV~~VId~G~~k~ 664 (1197)
.+..++.|..|++.|+|.. +++-+|||+| -++|+|-.|.||.
T Consensus 372 ---~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 372 ---KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred ---chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 3678999999999999864 6899999999 7899999999964
No 118
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.53 E-value=7.3e-15 Score=138.25 Aligned_cols=91 Identities=45% Similarity=0.770 Sum_probs=81.1
Q ss_pred HHHHHHHHhcccccCCccccccccccccCCchhhHHHHHHhhhc-CCcchHHHHHHhhcCCCCcccCcchHHHHHHHHhh
Q 000991 759 NAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIF-NCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQ 837 (1197)
Q Consensus 759 ~Al~~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~-~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a~~~r~~ 837 (1197)
+|++.|..+||||.+++||++|+.|+.||++|++||||+.|+.+ +|.+++++|+|+++..++|..| +.+..+...+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999 9999999999999999999877 556677778888
Q ss_pred cccCChhhHHHHH
Q 000991 838 FSARDYSDHLALV 850 (1197)
Q Consensus 838 f~~~~~SDhl~~l 850 (1197)
|.....|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8743279999863
No 119
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.50 E-value=2.2e-13 Score=168.39 Aligned_cols=352 Identities=20% Similarity=0.263 Sum_probs=192.0
Q ss_pred CCCHHHHHHHHHHHHcC----CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 297 LPSYKERDALLKAISEN----QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~----~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
+.....|+.+.+.|... ...++.|.||||||.++.+.|-+.+. .|.. ++++.|-..|..|+.+|+...+|.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---~Gkq--vLvLVPEI~Ltpq~~~rf~~rFg~ 271 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---QGKQ--VLVLVPEIALTPQLLARFKARFGA 271 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---cCCE--EEEEeccccchHHHHHHHHHHhCC
Confidence 45556667777777554 78999999999999999988876552 3444 444559999999999999999997
Q ss_pred cccceee---eEee---eccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChh-------HHHHHHHH
Q 000991 373 KLGESVG---YKVR---LEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED-------FLLIVLKE 439 (1197)
Q Consensus 373 ~lg~~VG---y~ir---~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D-------~Ll~lLr~ 439 (1197)
+++.... -.-| .....+...+|+++|---+.- .++++.+|||||-|+-+...+ -=+.+++.
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHHHH
Confidence 7655432 1111 122334678999999766543 688999999999996332221 01122222
Q ss_pred HcccCccceEEEecccCCHHHHHhhhCC-CCccccCCccc---ceeeeehHhHHHHhhhccCcccccccchhhhhHHHHH
Q 000991 440 LLPRRPELRLILMSATLNAELFSSYFGG-APMLHIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQK 515 (1197)
Q Consensus 440 ll~~r~~lklIlmSATl~~~~f~~yf~~-~pvi~i~gr~~---PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~ 515 (1197)
...+..+|+-|||+..+.+.+--.+ -..+....|.- +-++..++. ..+.... +
T Consensus 346 ---~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDm----r~e~~~~-------~--------- 402 (730)
T COG1198 346 ---KKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDM----RKEPLET-------G--------- 402 (730)
T ss_pred ---HHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEec----ccccccc-------C---------
Confidence 2246679999999998877665433 12222222221 222222111 0000000 0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhh-hccccCCCC--------CCchhh-----HHHHHHHHHhhcC-----
Q 000991 516 QALALRKRKSSIASAVEDALEAADFREYSVQTQ-QSLSCWNPD--------SIGFNL-----IEHVLCHIVKKER----- 576 (1197)
Q Consensus 516 ~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~-~~l~~~~~~--------~i~~~l-----i~~ll~~i~~~~~----- 576 (1197)
..-...+.+.+++.+......-.-...+ ..-...+.+ ..+..+ -..+.||.|....
T Consensus 403 -----~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~ 477 (730)
T COG1198 403 -----RSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQS 477 (730)
T ss_pred -----ccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCC
Confidence 0000111222333222111000000000 000111111 011111 1134455553321
Q ss_pred ----CCcEEEE-eCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHH--HHHhcCCCCCCceEEEEeecccccccc
Q 000991 577 ----PGAVLVF-MTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSE--QRLIFDKPEDGVRKIVLATNMAETSIT 649 (1197)
Q Consensus 577 ----~g~iLVF-l~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~e--r~~v~~~f~~G~~kVLVATniaEtGId 649 (1197)
++..|++ -+| ++++.+.|... + ++..++.+-++.+... -+..+..|.+|+..|||.|.+++.|.|
T Consensus 478 Cp~Cgs~~L~~~G~G---terieeeL~~~--F---P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~ 549 (730)
T COG1198 478 CPECGSEHLRAVGPG---TERIEEELKRL--F---PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHD 549 (730)
T ss_pred CCCCCCCeeEEeccc---HHHHHHHHHHH--C---CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCC
Confidence 1233444 344 34445555543 1 2344666666655432 356788999999999999999999999
Q ss_pred cCCEEEE--EeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCC-CCCeEEE
Q 000991 650 INDVVFV--IDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-QPGECYH 703 (1197)
Q Consensus 650 IPdV~~V--Id~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~cy~ 703 (1197)
+|+|+.| +|. |..-+...|...-=.-.-+.|=+|||||. .+|.++.
T Consensus 550 fp~vtLVgvl~a--------D~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 550 FPNVTLVGVLDA--------DTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred cccceEEEEEec--------hhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 9999886 332 11122222221111223566999999999 7887654
No 120
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.49 E-value=8.1e-13 Score=152.94 Aligned_cols=276 Identities=22% Similarity=0.267 Sum_probs=175.0
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
..++++-+|||.||||.-+.|-+.+ ...| +.| -|.|.||.+|++|+ .+.|..+....|-..++....+..
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~----aksG----vyc-GPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKS----AKSG----VYC-GPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhh----hccc----eec-chHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCc
Confidence 4567888999999999877665543 2222 444 49999999999998 556778877788666665544556
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCC-----CCCC-hhHHHHHHHHHcccCccceEEEecccCCHHHHHhhh
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE-----RGMN-EDFLLIVLKELLPRRPELRLILMSATLNAELFSSYF 465 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe-----R~~~-~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf 465 (1197)
++.+=||.+|+- .-..+++.||||++. ||+. +..|+++..+-+... +=-|-+
T Consensus 260 a~hvScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLC------Gepsvl--------- 317 (700)
T KOG0953|consen 260 AQHVSCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLC------GEPSVL--------- 317 (700)
T ss_pred ccceEEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhcc------CCchHH---------
Confidence 788999988763 234689999999993 3322 223333322211111 000000
Q ss_pred CCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhh
Q 000991 466 GGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSV 545 (1197)
Q Consensus 466 ~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~ 545 (1197)
..+.++.++++..+.. ..|
T Consensus 318 -----------------dlV~~i~k~TGd~vev------------------------------------------~~Y-- 336 (700)
T KOG0953|consen 318 -----------------DLVRKILKMTGDDVEV------------------------------------------REY-- 336 (700)
T ss_pred -----------------HHHHHHHhhcCCeeEE------------------------------------------Eee--
Confidence 0011122222211110 000
Q ss_pred hhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHH
Q 000991 546 QTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRL 625 (1197)
Q Consensus 546 ~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~ 625 (1197)
+.+ .|-. +++.+..-+++-.+|.++| +-++++|-.+...++... +..+..++|+||++.|..
T Consensus 337 ---eRl---~pL~-----v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g------~~k~aVIYGsLPPeTr~a 398 (700)
T KOG0953|consen 337 ---ERL---SPLV-----VEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAG------NHKCAVIYGSLPPETRLA 398 (700)
T ss_pred ---ccc---Ccce-----ehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhc------CcceEEEecCCCCchhHH
Confidence 000 0000 0011112234446677776 446789999999998762 344788999999987665
Q ss_pred hcCCCC--CCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC----CC
Q 000991 626 IFDKPE--DGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ----PG 699 (1197)
Q Consensus 626 v~~~f~--~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~----~G 699 (1197)
--..|. ++..+|+|||+...+|+|+ +|+-||-+.+.| |+ .-.+..|+..+..|-+|||||.+ .|
T Consensus 399 QA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 399 QAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred HHHHhCCCCCccceEEeeccccccccc-ceeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCc
Confidence 444454 4899999999999999999 788888777766 44 22356789999999999999996 47
Q ss_pred eEEEecccc
Q 000991 700 ECYHLYPRY 708 (1197)
Q Consensus 700 ~cy~Lys~~ 708 (1197)
.+-.|+.++
T Consensus 469 ~vTtl~~eD 477 (700)
T KOG0953|consen 469 EVTTLHSED 477 (700)
T ss_pred eEEEeeHhh
Confidence 777776654
No 121
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.48 E-value=2.6e-12 Score=164.88 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=90.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCC---CceEEEEeecccccccccCC
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED---GVRKIVLATNMAETSITIND 652 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~---G~~kVLVATniaEtGIdIPd 652 (1197)
.+.++|||+.-......+.+.|... ++....+||+++..+|..+++.|.. +..-+|+||.++..|||+..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~-------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR-------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc-------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 4579999999888888888888765 5567889999999999999999964 34567899999999999999
Q ss_pred EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC---CeEEEeccccchh
Q 000991 653 VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP---GECYHLYPRYVYD 711 (1197)
Q Consensus 653 V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~---G~cy~Lys~~~~~ 711 (1197)
.++||. ||+..+. +...|+.|||-|.|. =.+|+|++....+
T Consensus 559 Ad~VIi--------yD~dWNP----------~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 559 ADIVIL--------YDSDWNP----------QVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CCEEEE--------eCCCCCh----------HHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 999999 6655544 455599999999975 3678998887654
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.47 E-value=8e-12 Score=161.83 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=89.9
Q ss_pred HHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccc
Q 000991 566 HVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAE 645 (1197)
Q Consensus 566 ~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaE 645 (1197)
..+..++.. .+|++|||+++.+..+.+++.|....... ++.+.. .+.. .+|..+++.|+.|...|+++|+.+.
T Consensus 664 ~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~---~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~ 736 (850)
T TIGR01407 664 SYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFE---GYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFW 736 (850)
T ss_pred HHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcccc---CceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceee
Confidence 344444443 35899999999999999999997531111 233332 2222 4678889999999999999999999
Q ss_pred cccccCCE--EEEEeCCCCCcccccCC----------CCCCCccc--cccCHhhHHhhhcccCCCCC--CeEEEe---cc
Q 000991 646 TSITINDV--VFVIDCGKAKETSYDAL----------NNTPCLLP--SWISKAAARQRRGRAGRVQP--GECYHL---YP 706 (1197)
Q Consensus 646 tGIdIPdV--~~VId~G~~k~~~yD~~----------~~~~~l~~--~~iSkas~~QR~GRAGR~~~--G~cy~L---ys 706 (1197)
+|||+|+. +.||-.|+|-..--|+. .+-..+.. .|-....++|-+||.=|... |..+.| +.
T Consensus 737 EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~ 816 (850)
T TIGR01407 737 EGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLV 816 (850)
T ss_pred cccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccc
Confidence 99999954 46788899953211110 00111111 11123457899999999853 766666 33
Q ss_pred ccchhh
Q 000991 707 RYVYDA 712 (1197)
Q Consensus 707 ~~~~~~ 712 (1197)
...|..
T Consensus 817 ~~~Yg~ 822 (850)
T TIGR01407 817 GKRYGK 822 (850)
T ss_pred cchHHH
Confidence 345543
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.43 E-value=2.2e-12 Score=136.06 Aligned_cols=154 Identities=27% Similarity=0.229 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHcC-CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 297 LPSYKERDALLKAISEN-QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~-~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
.+...+|.+++..+.+. ++++|+|+||||||+.+..++++.... +....++++.|++.++.|+..++.........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~---~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR---GKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc---cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 45577888889998888 999999999999999999998887643 22346788889999999999998776643211
Q ss_pred ceeeeEeeec------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCC--ChhHHHHHHHHHcccCcc
Q 000991 376 ESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGM--NEDFLLIVLKELLPRRPE 446 (1197)
Q Consensus 376 ~~VGy~ir~e------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~--~~D~Ll~lLr~ll~~r~~ 446 (1197)
....+..... .......+++++|++.+.+.+.... ....+++|||||+|.... ..+.+..++..+ .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~~ 160 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---PKN 160 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC---Ccc
Confidence 1111100000 0122223999999999999887665 567789999999997542 223333333332 467
Q ss_pred ceEEEecccC
Q 000991 447 LRLILMSATL 456 (1197)
Q Consensus 447 lklIlmSATl 456 (1197)
.++++||||+
T Consensus 161 ~~~v~~saT~ 170 (201)
T smart00487 161 VQLLLLSATP 170 (201)
T ss_pred ceEEEEecCC
Confidence 8899999999
No 124
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.40 E-value=2.6e-12 Score=127.44 Aligned_cols=137 Identities=32% Similarity=0.319 Sum_probs=94.6
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeecccc-----
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMK----- 388 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~----- 388 (1197)
++++|.||||+|||+++..++.+.... +...++++++|++.++.++.+.+...... +..+.+-.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 468999999999999999888876543 23346777779999999999988776642 23333333222222
Q ss_pred -CCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 389 -GRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 389 -~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
..+..|+++|++.+.+.+.... ....+++|||||+|.-......... ........+..+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEeccC
Confidence 3578999999999988776554 4567899999999953222211111 22233345678899999995
No 125
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.38 E-value=4.9e-12 Score=145.55 Aligned_cols=319 Identities=14% Similarity=0.040 Sum_probs=195.5
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH------H
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV------A 367 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV------a 367 (1197)
...-.-+.+|.+++..+.+|+++++.-.|.+||+|+.-....+.... ......++..|+.+++....+-. -
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I 358 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL---CHATNSLLPSEMVEHLRNGSKGQVVHVEVI 358 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc---CcccceecchhHHHHhhccCCceEEEEEeh
Confidence 33445678899999999999999999999999998766555443322 23345566668888775432110 0
Q ss_pred HHhCCcccceee-eEe---eec-cccCCCceEEEEcchHHHHHHhcCC-----CCCCccEEEEecCCCC-CCChhHHHHH
Q 000991 368 AERGEKLGESVG-YKV---RLE-GMKGRDTRLMFCTTGILLRRLLVDR-----SLRGVTHVIVDEIHER-GMNEDFLLIV 436 (1197)
Q Consensus 368 ~e~g~~lg~~VG-y~i---r~e-~~~~~~t~Ilv~Tpg~LLr~L~~d~-----~L~~is~VIIDEaHeR-~~~~D~Ll~l 436 (1197)
.++.. ..|. |.- ..+ .....+.+++|..|.+.....+... .+-...++++||+|-. ++........
T Consensus 359 ~~~K~---A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~ 435 (1034)
T KOG4150|consen 359 KARKS---AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQ 435 (1034)
T ss_pred hhhhc---ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHH
Confidence 00000 0011 000 000 0112457899999988766554332 3445578899999942 2322333333
Q ss_pred HHHHcc------cCccceEEEecccC--CHHHHHhhhCC--CCccccCCcccceeeeehHhHHHHhhhccCcccccccch
Q 000991 437 LKELLP------RRPELRLILMSATL--NAELFSSYFGG--APMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYG 506 (1197)
Q Consensus 437 Lr~ll~------~r~~lklIlmSATl--~~~~f~~yf~~--~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~ 506 (1197)
+|.++. ...+++++-.|||+ +....++.|+- ...+++.|.+-.-+.+.+- .+..+.+. .
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~W--------NP~~~P~~---~ 504 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLW--------NPSAPPTS---K 504 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEe--------CCCCCCcc---h
Confidence 444332 33578999999999 45666777763 3455666654332222110 00000000 0
Q ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCC
Q 000991 507 QEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTG 586 (1197)
Q Consensus 507 ~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~ 586 (1197)
.++.+.+. ....++..++. .+-+++.||+.
T Consensus 505 --------------~~~~~~i~----------------------------------E~s~~~~~~i~--~~~R~IAFC~~ 534 (1034)
T KOG4150|consen 505 --------------SEKSSKVV----------------------------------EVSHLFAEMVQ--HGLRCIAFCPS 534 (1034)
T ss_pred --------------hhhhhHHH----------------------------------HHHHHHHHHHH--cCCcEEEeccH
Confidence 00000000 01123333333 24689999999
Q ss_pred HHHHHHHHHHHHcCCC-CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcc
Q 000991 587 WDDINSLKDQLQAHPL-LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKET 665 (1197)
Q Consensus 587 ~~ei~~l~~~L~~~~~-~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~ 665 (1197)
++-++-+....+.... .+..--..|..+.||...++|++|+...-.|+.+-|||||.+|.||||...+.|+.+|+|-
T Consensus 535 R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~-- 612 (1034)
T KOG4150|consen 535 RKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG-- 612 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch--
Confidence 9888776554432100 0000011256788999999999999999999999999999999999999999999999996
Q ss_pred cccCCCCCCCccccccCHhhHHhhhcccCCCC
Q 000991 666 SYDALNNTPCLLPSWISKAAARQRRGRAGRVQ 697 (1197)
Q Consensus 666 ~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~ 697 (1197)
|-++++|..|||||..
T Consensus 613 ----------------S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 613 ----------------SIANLWQQAGRAGRRN 628 (1034)
T ss_pred ----------------hHHHHHHHhccccccC
Confidence 8999999999999984
No 126
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.34 E-value=1e-10 Score=146.92 Aligned_cols=97 Identities=22% Similarity=0.117 Sum_probs=69.3
Q ss_pred EEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCC--------------------------CCCCc
Q 000991 581 LVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDK--------------------------PEDGV 634 (1197)
Q Consensus 581 LVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~--------------------------f~~G~ 634 (1197)
||=+.+++.+-.++..|....... ...+.+..+||..+...|..+++. ...+.
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~-~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEE-KYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhcccc-CCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 677888888888888887652221 235678889999877666554422 12357
Q ss_pred eEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCC
Q 000991 635 RKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPG 699 (1197)
Q Consensus 635 ~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G 699 (1197)
..|||||.+.|.|+|++ .+++| ..+.+-.+.+||+||..|.+.+
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccccC
Confidence 89999999999999994 55554 2233556777999999998753
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.33 E-value=4e-12 Score=126.09 Aligned_cols=103 Identities=25% Similarity=0.380 Sum_probs=91.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~ 655 (1197)
..+++|||+++.+.++.+++.|... ...+..+||+++..++..+++.|.+|..+||++|+++++|+|+|++++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 4689999999999999999999873 456899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEE
Q 000991 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYH 703 (1197)
Q Consensus 656 VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~ 703 (1197)
||..+.+ .+...+.|++||+||.+ .|.|+.
T Consensus 100 vi~~~~~------------------~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 100 VINYDLP------------------WSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEEeCCC------------------CCHHHheecccccccCCCCceEEe
Confidence 9974443 36778889999999997 687765
No 128
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.30 E-value=6.8e-12 Score=156.49 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=102.5
Q ss_pred HHHHHHHHhh-cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc
Q 000991 565 EHVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1197)
Q Consensus 565 ~~ll~~i~~~-~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni 643 (1197)
..++..+... ..+.++|||+++.+.++.+++.|... ++.+..+||+++..+|..+++.|+.|...|+|||++
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 3455555433 34578999999999999999999876 567889999999999999999999999999999999
Q ss_pred cccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEecccc
Q 000991 644 AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRY 708 (1197)
Q Consensus 644 aEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~ 708 (1197)
+++|+|+|++++||.++.-. | ..+-|..+|.||+|||||..+|.|+.+++..
T Consensus 502 L~rGfDiP~v~lVvi~Dadi---f----------G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADK---E----------GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hcCCeeeCCCcEEEEeCccc---c----------cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 99999999999999854211 0 1112677899999999999999998887643
No 129
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.27 E-value=2.5e-12 Score=116.86 Aligned_cols=72 Identities=29% Similarity=0.402 Sum_probs=66.9
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHH
Q 000991 608 RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAAR 687 (1197)
Q Consensus 608 ~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~ 687 (1197)
++.+..+||+++..+|+.+++.|..|..+|||||+++++|||+|++++||.++.+. |...|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------SPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------SHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------CHHHHH
Confidence 56799999999999999999999999999999999999999999999999966654 788999
Q ss_pred hhhcccCCCC
Q 000991 688 QRRGRAGRVQ 697 (1197)
Q Consensus 688 QR~GRAGR~~ 697 (1197)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999975
No 130
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.24 E-value=2.5e-11 Score=127.55 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHc-------CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh
Q 000991 298 PSYKERDALLKAISE-------NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER 370 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~-------~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~ 370 (1197)
.++.+|.+++..+.+ ++.+++.+|||||||..+..++.+.. . +++++.|+..++.|..+.+....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~----~----~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA----R----KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH----C----EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc----c----ceeEecCHHHHHHHHHHHHHHhh
Confidence 456778888877763 68999999999999988776665533 1 67777799999999998884333
Q ss_pred CCcccce--------ee--------eEeeeccccCCCceEEEEcchHHHHHHhcCC------------CCCCccEEEEec
Q 000991 371 GEKLGES--------VG--------YKVRLEGMKGRDTRLMFCTTGILLRRLLVDR------------SLRGVTHVIVDE 422 (1197)
Q Consensus 371 g~~lg~~--------VG--------y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~------------~L~~is~VIIDE 422 (1197)
....... .+ ..............++++|...+........ .....++||+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 75 SEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp TTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 2211110 00 0001111223467899999999987654311 345678999999
Q ss_pred CCCCCCChhH-HHHHHHHHcccCccceEEEecccCC
Q 000991 423 IHERGMNEDF-LLIVLKELLPRRPELRLILMSATLN 457 (1197)
Q Consensus 423 aHeR~~~~D~-Ll~lLr~ll~~r~~lklIlmSATl~ 457 (1197)
||+- ..+. ...+++ .+...+|+||||+.
T Consensus 155 aH~~--~~~~~~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHY--PSDSSYREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp GGCT--HHHHHHHHHHH-----SSCCEEEEEESS-S
T ss_pred hhhc--CCHHHHHHHHc-----CCCCeEEEEEeCcc
Confidence 9963 2222 223333 46778999999974
No 131
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.23 E-value=2.1e-09 Score=137.94 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccC-CCCHHHHHHhcCCCCCCceEEEEeec
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHG-SMASSEQRLIFDKPEDGVRKIVLATN 642 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs-~L~~~er~~v~~~f~~G~~kVLVATn 642 (1197)
+...+..+. ..+|++||++++.+..+.+++.|... ...++ ..| +.+ +..+.+.|+.+...||++|+
T Consensus 636 ~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~l-~Qg~~~~---~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 636 IAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSHL-AQEKNGT---AYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred HHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcEE-EeCCCcc---HHHHHHHHHcCCCeEEEecc
Confidence 444444444 35689999999999999999999643 12232 223 222 34567788888889999999
Q ss_pred ccccccccC--CEEEEEeCCCCCcccccCC----------CCCCCccccccC--HhhHHhhhcccCCCC--CCeEEEecc
Q 000991 643 MAETSITIN--DVVFVIDCGKAKETSYDAL----------NNTPCLLPSWIS--KAAARQRRGRAGRVQ--PGECYHLYP 706 (1197)
Q Consensus 643 iaEtGIdIP--dV~~VId~G~~k~~~yD~~----------~~~~~l~~~~iS--kas~~QR~GRAGR~~--~G~cy~Lys 706 (1197)
.+-+|||+| +...||-.++|-..-.||. .+-..+...-+. ...++|-+||.=|.. .|.++.|=+
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 999999997 4666777898854332321 111112111122 346789999999986 487666622
Q ss_pred ---ccchhhhhhcCCcc---ccccchhhhh
Q 000991 707 ---RYVYDAFADYQLPE---LLRTPLQSLC 730 (1197)
Q Consensus 707 ---~~~~~~l~~~~~PE---Ilr~~L~~l~ 730 (1197)
...|...--..+|+ +...++.++.
T Consensus 783 R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~ 812 (820)
T PRK07246 783 RILTKSYGKQILASLAEEFLISQQNFSDVL 812 (820)
T ss_pred cccccHHHHHHHHhCCCCCccccCCHHHHH
Confidence 23454433334443 3445555553
No 132
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.22 E-value=3.8e-11 Score=150.70 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=102.4
Q ss_pred HHHHHHHhh-cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc
Q 000991 566 HVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1197)
Q Consensus 566 ~ll~~i~~~-~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia 644 (1197)
.++..+... ..+.++||||++.+.++.+++.|... ++.+..+||+++..+|..++..|+.|...|+|||+++
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L 506 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHH
Confidence 444444332 24568999999999999999999876 6778999999999999999999999999999999999
Q ss_pred ccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccc
Q 000991 645 ETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPR 707 (1197)
Q Consensus 645 EtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~ 707 (1197)
++|+|+|++++||.++... |. -+-+..+|.||+|||||...|.|+.+++.
T Consensus 507 ~rGfdlp~v~lVii~d~ei---fG----------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 507 REGLDIPEVSLVAILDADK---EG----------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred hCCccccCCcEEEEeCCcc---cc----------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999999999999855432 11 12367789999999999999999988874
No 133
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.20 E-value=7.3e-11 Score=118.01 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=87.6
Q ss_pred HcCCeEEEEecCCChHHHH-HHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeec-ccc
Q 000991 311 SENQVVVVSGETGCGKTTQ-LPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLE-GMK 388 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq-~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e-~~~ 388 (1197)
.+++..+|-..+|+|||+. .|..+.+.+ . ...+++++.|||.+|..+++.+. +. .+.+....- ...
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i-~----~~~rvLvL~PTRvva~em~~aL~---~~----~~~~~t~~~~~~~ 69 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAI-K----RRLRVLVLAPTRVVAEEMYEALK---GL----PVRFHTNARMRTH 69 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHH-H----TT--EEEEESSHHHHHHHHHHTT---TS----SEEEESTTSS---
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHH-H----ccCeEEEecccHHHHHHHHHHHh---cC----CcccCceeeeccc
Confidence 3577889999999999996 556555544 2 34578888899999998887662 11 233333222 122
Q ss_pred CCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCH
Q 000991 389 GRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1197)
Q Consensus 389 ~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~ 458 (1197)
..+.-|-++|.+.+.+.+.+...+.++++||+||+|--+..+=.....++..... ...++|+||||++.
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG 138 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPG 138 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCC
Confidence 3566789999999999888766889999999999996444444455555555333 45789999999853
No 134
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=5.5e-09 Score=127.94 Aligned_cols=115 Identities=27% Similarity=0.366 Sum_probs=79.1
Q ss_pred HHHHHHHhh-cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc
Q 000991 566 HVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1197)
Q Consensus 566 ~ll~~i~~~-~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia 644 (1197)
.++..+.+. ..+.||||.+.+.+..+.+.+.|.+. ++....|++.-...|-..|-+.-+.| .|.||||+|
T Consensus 415 Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~-------gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMA 485 (764)
T PRK12326 415 AIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA-------GVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMA 485 (764)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC-------CCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCC
Confidence 344444333 35679999999999999999999986 44445566653333333333333333 589999999
Q ss_pred ccccccC---------------CEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccc
Q 000991 645 ETSITIN---------------DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPR 707 (1197)
Q Consensus 645 EtGIdIP---------------dV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~ 707 (1197)
.+|.||. +=-+||-+.++. |+.-=.|-+|||||.| ||.+-.+.+-
T Consensus 486 GRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe------------------SrRID~QLrGRaGRQGDpGss~f~lSl 546 (764)
T PRK12326 486 GRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR------------------SERLDNQLRGRAGRQGDPGSSVFFVSL 546 (764)
T ss_pred CCccCeecCCCcccchHHHHHcCCcEEEeccCCc------------------hHHHHHHHhcccccCCCCCceeEEEEc
Confidence 9999986 223677655555 5556679999999997 7877666554
No 135
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.16 E-value=3.5e-09 Score=127.04 Aligned_cols=375 Identities=19% Similarity=0.160 Sum_probs=195.9
Q ss_pred HHHHHHHHHH----HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh-CCcc
Q 000991 300 YKERDALLKA----ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER-GEKL 374 (1197)
Q Consensus 300 ~~~q~~Il~~----I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~-g~~l 374 (1197)
..||-+=+.. ..++-+.|+.-+-|-|||.|..-++--... .++-.+..+|+.|.-.|.+=+ ..++... +..+
T Consensus 169 r~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~--~~~~~GPfLVi~P~StL~NW~-~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 169 RDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKG--RKGIPGPFLVIAPKSTLDNWM-NEFKRFTPSLNV 245 (971)
T ss_pred chhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHH--hcCCCCCeEEEeeHhhHHHHH-HHHHHhCCCcce
Confidence 3444444443 356778999999999999988765543222 122223344444987665433 3343322 1122
Q ss_pred cceeeeE-----eeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChh-HHHHHHHHHcccCccce
Q 000991 375 GESVGYK-----VRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED-FLLIVLKELLPRRPELR 448 (1197)
Q Consensus 375 g~~VGy~-----ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D-~Ll~lLr~ll~~r~~lk 448 (1197)
-..+|-. .+-+-......+|+++|.++.++.-. --.--+.+++||||+| |--+.. .|...++.+... .
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~~~----n 319 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFKTD----N 319 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-HHhcCCceEEEechhh-hhcchhhHHHHHHHHhccc----c
Confidence 2223311 01111122368999999999886311 0012356899999999 433333 444555555433 3
Q ss_pred EEEecccC---------------------CHHHHHhhhCCCCccc---cCCcccceee-eehHhHHHHhhhccCcccccc
Q 000991 449 LILMSATL---------------------NAELFSSYFGGAPMLH---IPGFTYPVRA-YFLENILEMTRYRLNTYNQID 503 (1197)
Q Consensus 449 lIlmSATl---------------------~~~~f~~yf~~~pvi~---i~gr~~PV~~-~yledi~~l~~~~l~~~~~i~ 503 (1197)
-++++.|+ +.+.|.+||....... +-.+.++|-. +.+..+..-....+.+...+.
T Consensus 320 rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~ 399 (971)
T KOG0385|consen 320 RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELI 399 (971)
T ss_pred eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceee
Confidence 57888884 2467888886421100 0011122211 222222222222333333332
Q ss_pred cchhh----hhHHHH---HHHHHHHh----hhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhh---------
Q 000991 504 DYGQE----KSWKMQ---KQALALRK----RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNL--------- 563 (1197)
Q Consensus 504 ~~~~e----~~~~~~---~~~~~~~~----~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~l--------- 563 (1197)
.|..- ..|... +....... .+..+...+-+ +..+....|-..- .....|...+-.+
T Consensus 400 iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQ-LRKccnHPYLF~g---~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 400 IYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQ-LRKCCNHPYLFDG---AEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred EeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHH-HHHhcCCccccCC---CCCCCCCCcchHHHhcCcceeh
Confidence 22211 111000 00000000 01111111111 1111111111000 0001122222222
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC---ceEEEEe
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG---VRKIVLA 640 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G---~~kVLVA 640 (1197)
+..+|..+. ..+.+||||-. ...+-+.|.....+. ++...-+.|+++.++|...++.|... +.-.+++
T Consensus 476 LDkLL~~Lk--~~GhRVLIFSQ----mt~mLDILeDyc~~R---~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 476 LDKLLPKLK--EQGHRVLIFSQ----MTRMLDILEDYCMLR---GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HHHHHHHHH--hCCCeEEEeHH----HHHHHHHHHHHHHhc---CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 233444433 34579999954 334444444332222 56678899999999999998888643 4456789
Q ss_pred ecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchh
Q 000991 641 TNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1197)
Q Consensus 641 TniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~ 711 (1197)
|-...-|||+-..+.||- ||...|.+.-+ ++.+|+-|.|-..+=++|+|++....+
T Consensus 547 TRAGGLGINL~aADtVIl--------yDSDWNPQ~DL-------QAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVIL--------YDSDWNPQVDL-------QAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccccccccccEEEE--------ecCCCCchhhh-------HHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999999998 88777766443 778888888888899999999987654
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=4.9e-09 Score=131.22 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=81.2
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
.|-...+--+++-.+.=++--|....||+|||+++.++++-.++ .|..+.|+ .|+-.||.+-++.+...+. .+|
T Consensus 78 ~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al---~G~~Vhvv--T~ndyLA~RD~e~m~~l~~-~lG 151 (913)
T PRK13103 78 VMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL---SGKGVHVV--TVNDYLARRDANWMRPLYE-FLG 151 (913)
T ss_pred HhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH---cCCCEEEE--eCCHHHHHHHHHHHHHHhc-ccC
Confidence 33344444456666655666688999999999998888876554 23434333 4999999999988876653 355
Q ss_pred ceeeeEee----eccccCCCceEEEEcchHH-HHHHhcCC-------CCCCccEEEEecCCC
Q 000991 376 ESVGYKVR----LEGMKGRDTRLMFCTTGIL-LRRLLVDR-------SLRGVTHVIVDEIHE 425 (1197)
Q Consensus 376 ~~VGy~ir----~e~~~~~~t~Ilv~Tpg~L-Lr~L~~d~-------~L~~is~VIIDEaHe 425 (1197)
..||.-.. .+....-.++|+|+|..-+ .+.|..+- ...++.++||||+|.
T Consensus 152 l~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred CEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 56664221 1112223589999999876 33333222 347899999999993
No 137
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.11 E-value=3.8e-10 Score=129.23 Aligned_cols=314 Identities=14% Similarity=0.152 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHcC---CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 299 SYKERDALLKAISEN---QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~---~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
+.++|+.-+..+-.| +.-||+.|-|+|||++-.-.+. .-...|.++| -.-.++.|+...+..-....-.
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~------tikK~clvLc--ts~VSVeQWkqQfk~wsti~d~ 374 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC------TIKKSCLVLC--TSAVSVEQWKQQFKQWSTIQDD 374 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee------eecccEEEEe--cCccCHHHHHHHHHhhcccCcc
Confidence 356777777776543 4678888999999965433221 1235678888 4567778887777554443333
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHHHhcC----C---C--CCCccEEEEecCCCCCCChhHHHHHHHHHcccCcc
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD----R---S--LRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPE 446 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d----~---~--L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~ 446 (1197)
..+-+..........++.|+|+|..|+..-=.+. . + -..+.++|+||||- +..-.+..++..+....
T Consensus 375 ~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv--vPA~MFRRVlsiv~aHc-- 450 (776)
T KOG1123|consen 375 QICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV--VPAKMFRRVLSIVQAHC-- 450 (776)
T ss_pred ceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc--chHHHHHHHHHHHHHHh--
Confidence 3333322222223456889999988774211110 0 1 24678999999995 44444444444443332
Q ss_pred ceEEEecccC--CHHHHHh--hhCCCCccccCCcccceeeeehHhHHHHhh--hccCcccccccchhhhhHHHHHHHHHH
Q 000991 447 LRLILMSATL--NAELFSS--YFGGAPMLHIPGFTYPVRAYFLENILEMTR--YRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1197)
Q Consensus 447 lklIlmSATl--~~~~f~~--yf~~~pvi~i~gr~~PV~~~yledi~~l~~--~~l~~~~~i~~~~~e~~~~~~~~~~~~ 520 (1197)
-++++||+ ..+.+.+ |+-|. .. |-.+..++.. +.... .-...++.-
T Consensus 451 --KLGLTATLvREDdKI~DLNFLIGP-------Kl------YEAnWmdL~~kGhIA~V-qCaEVWCpM------------ 502 (776)
T KOG1123|consen 451 --KLGLTATLVREDDKITDLNFLIGP-------KL------YEANWMDLQKKGHIAKV-QCAEVWCPM------------ 502 (776)
T ss_pred --hccceeEEeeccccccccceeecc-------hh------hhccHHHHHhCCceeEE-eeeeeecCC------------
Confidence 48999998 2222211 11111 00 1111111111 00000 000000000
Q ss_pred HhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcC
Q 000991 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1197)
Q Consensus 521 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~ 600 (1197)
..+...+++... ......|..++|... ..-. .|...+.. .+.+||||..+.-.....+-.|.+.
T Consensus 503 ------t~eFy~eYL~~~------t~kr~lLyvMNP~KF--raCq-fLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp 566 (776)
T KOG1123|consen 503 ------TPEFYREYLREN------TRKRMLLYVMNPNKF--RACQ-FLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP 566 (776)
T ss_pred ------CHHHHHHHHhhh------hhhhheeeecCcchh--HHHH-HHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc
Confidence 001111111100 011223444555432 1112 22223333 5679999998766555555444432
Q ss_pred CCCCCCCceEEEeccCCCCHHHHHHhcCCCCC-CceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccc
Q 000991 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPED-GVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPS 679 (1197)
Q Consensus 601 ~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~-G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~ 679 (1197)
+++|..++.||.+|++.|+- .+++-|+-.-++.+|||+|..++.|.-. ..
T Consensus 567 ------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQIS-----------------SH 617 (776)
T KOG1123|consen 567 ------------FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQIS-----------------SH 617 (776)
T ss_pred ------------eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEc-----------------cc
Confidence 57899999999999999985 4678888899999999999999999711 11
Q ss_pred ccCHhhHHhhhcccCCCC
Q 000991 680 WISKAAARQRRGRAGRVQ 697 (1197)
Q Consensus 680 ~iSkas~~QR~GRAGR~~ 697 (1197)
.=|+.+-.||.||.-|..
T Consensus 618 ~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 618 GGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ccchHHHHHHHHHHHHHh
Confidence 227778889999998885
No 138
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.10 E-value=7.5e-10 Score=137.89 Aligned_cols=321 Identities=17% Similarity=0.185 Sum_probs=195.0
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeee---Eeeeccc
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY---KVRLEGM 387 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy---~ir~e~~ 387 (1197)
..|++|+|.+|+|||||.++-..++. +....+++++.|.-+.+..++..+...++.-.|..+-- ....+-+
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchH
Confidence 46889999999999999888777764 45667899999999999888887776665444433211 1111222
Q ss_pred cCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCCh----hHHHHHHHHHcc-cCccceEEEecccC-CHHHH
Q 000991 388 KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNE----DFLLIVLKELLP-RRPELRLILMSATL-NAELF 461 (1197)
Q Consensus 388 ~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~----D~Ll~lLr~ll~-~r~~lklIlmSATl-~~~~f 461 (1197)
.-...+|+++||+..-.. + ....+++.|.||.|.-|-.. +.+.. ++.+.. .-.++|++.+|..+ |+.++
T Consensus 1231 l~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~ 1305 (1674)
T KOG0951|consen 1231 LLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL 1305 (1674)
T ss_pred HhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh
Confidence 234679999999986432 3 67789999999999654211 11111 122111 12578899999998 77776
Q ss_pred HhhhCCCCccc--cCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000991 462 SSYFGGAPMLH--IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAAD 539 (1197)
Q Consensus 462 ~~yf~~~pvi~--i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~ 539 (1197)
-++..+.++. ...|..|.+++.-. .. ++.+ .........-.
T Consensus 1306 -ig~s~~~v~Nf~p~~R~~Pl~i~i~~-------~~------~~~~------------------~~~~~am~~~~----- 1348 (1674)
T KOG0951|consen 1306 -IGASSSGVFNFSPSVRPVPLEIHIQS-------VD------ISHF------------------ESRMLAMTKPT----- 1348 (1674)
T ss_pred -ccccccceeecCcccCCCceeEEEEE-------ec------cchh------------------HHHHHHhhhhH-----
Confidence 3333333333 23344454432110 00 0000 00000000000
Q ss_pred hcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC-----------------
Q 000991 540 FREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL----------------- 602 (1197)
Q Consensus 540 ~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~----------------- 602 (1197)
..++..+. ..+.+.+||+|+++.+..++..|-....
T Consensus 1349 ------------------------~~ai~~~a---~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~ 1401 (1674)
T KOG0951|consen 1349 ------------------------YTAIVRHA---GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDET 1401 (1674)
T ss_pred ------------------------HHHHHHHh---cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHh
Confidence 01112222 2457899999999999887655432211
Q ss_pred CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 603 ~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
+...-+..|. |-+|+..++.-+-..|..|.++|+|...- -.|+-...--+|| .| +..||...+...- .+
T Consensus 1402 l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-mg---t~~ydg~e~~~~~----y~ 1470 (1674)
T KOG0951|consen 1402 LRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-MG---TQYYDGKEHSYED----YP 1470 (1674)
T ss_pred hhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-ec---ceeeccccccccc----Cc
Confidence 1111233344 89999999999999999999999987765 7777665333333 23 4457766544322 37
Q ss_pred HhhHHhhhcccCCCCCCeEEEecccc---chhhhhhcCCc
Q 000991 683 KAAARQRRGRAGRVQPGECYHLYPRY---VYDAFADYQLP 719 (1197)
Q Consensus 683 kas~~QR~GRAGR~~~G~cy~Lys~~---~~~~l~~~~~P 719 (1197)
.++..|+.|+|.| .|.|+.+.... -|.++...++|
T Consensus 1471 i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1471 IAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred hhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 7899999999988 78888886543 33445555544
No 139
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=1.8e-10 Score=144.28 Aligned_cols=107 Identities=25% Similarity=0.302 Sum_probs=90.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccC---C
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---D 652 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIP---d 652 (1197)
.+.++||||++++..+.+...|... ++....+|+ .+.+|+..+..|..+...|+||||+|++|+||+ +
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~-------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~ 667 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAK-------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEG 667 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc-------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccc
Confidence 4679999999999999999999986 566778887 577888999999999999999999999999999 5
Q ss_pred EE-----EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 653 VV-----FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 653 V~-----~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
|. +||.+.++. |+..+.||+|||||.| ||.+..+++.++
T Consensus 668 V~~vGGL~VIgterhe------------------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 668 VRELGGLFILGSERHE------------------SRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred hhhhCCceeeCCCCCc------------------hHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 53 347755554 7778899999999996 799988887643
No 140
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.09 E-value=9.8e-11 Score=106.18 Aligned_cols=80 Identities=31% Similarity=0.425 Sum_probs=70.1
Q ss_pred HHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCC
Q 000991 593 LKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672 (1197)
Q Consensus 593 l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~ 672 (1197)
+++.|... ++.+..+||+++.++|..+++.|..|..+||++|+++++|+|+|++..||..+.+
T Consensus 3 l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~---------- 65 (82)
T smart00490 3 LAELLKEL-------GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLP---------- 65 (82)
T ss_pred HHHHHHHC-------CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCC----------
Confidence 45556554 5678999999999999999999999999999999999999999999999986654
Q ss_pred CCCccccccCHhhHHhhhcccCCCC
Q 000991 673 TPCLLPSWISKAAARQRRGRAGRVQ 697 (1197)
Q Consensus 673 ~~~l~~~~iSkas~~QR~GRAGR~~ 697 (1197)
.+...+.|++||+||.+
T Consensus 66 --------~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 66 --------WSPASYIQRIGRAGRAG 82 (82)
T ss_pred --------CCHHHHHHhhcccccCC
Confidence 37889999999999964
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.03 E-value=1.6e-08 Score=132.07 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni 643 (1197)
+...|..++.. .+|++|||+++.+..+.+++.|...... .++.+.. . ++....+..+.+.|+.+...||++|..
T Consensus 740 la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~---~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~s 813 (928)
T PRK08074 740 VAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEEL---EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSS 813 (928)
T ss_pred HHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhcccc---cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCc
Confidence 33444444433 4689999999999999999999754211 1222322 2 333345677888888888899999999
Q ss_pred cccccccCC--EEEEEeCCCCCcccccCC----------CCCCCccc--cccCHhhHHhhhcccCCCC--CCeEEEe---
Q 000991 644 AETSITIND--VVFVIDCGKAKETSYDAL----------NNTPCLLP--SWISKAAARQRRGRAGRVQ--PGECYHL--- 704 (1197)
Q Consensus 644 aEtGIdIPd--V~~VId~G~~k~~~yD~~----------~~~~~l~~--~~iSkas~~QR~GRAGR~~--~G~cy~L--- 704 (1197)
..+|||+|+ +.+||-.++|-..--||. .+-..+.. .|.....++|-+||.=|.. .|.++.|
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 999999995 588998998842111110 01111111 1223446789999999985 4776666
Q ss_pred ccccchhhhhhcCCcc--ccccchhhhh
Q 000991 705 YPRYVYDAFADYQLPE--LLRTPLQSLC 730 (1197)
Q Consensus 705 ys~~~~~~l~~~~~PE--Ilr~~L~~l~ 730 (1197)
+....|...--...|. +.+.++.++.
T Consensus 894 ~~~k~Yg~~~l~sLP~~~~~~~~~~~~~ 921 (928)
T PRK08074 894 LTTTSYGKYFLESLPTVPVYEGTLEELL 921 (928)
T ss_pred cccchHHHHHHHhCCCCCcccCCHHHHH
Confidence 3334454433333443 2334555543
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.96 E-value=2.4e-07 Score=115.28 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=76.0
Q ss_pred HHHHHHHhh-cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC-ceEEEEeecc
Q 000991 566 HVLCHIVKK-ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-VRKIVLATNM 643 (1197)
Q Consensus 566 ~ll~~i~~~-~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G-~~kVLVATni 643 (1197)
.++..+... ..+.||||.+.+.+..+.+...|... ++....|++.-...|-..|- ..| .-.|.||||+
T Consensus 414 Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNM 483 (925)
T PRK12903 414 AVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA-------NIPHTVLNAKQNAREAEIIA---KAGQKGAITIATNM 483 (925)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-------CCCceeecccchhhHHHHHH---hCCCCCeEEEeccc
Confidence 344444432 35679999999999999999999976 33334455542223323332 334 3468999999
Q ss_pred cccccccCCEE--------EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecc
Q 000991 644 AETSITINDVV--------FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1197)
Q Consensus 644 aEtGIdIPdV~--------~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys 706 (1197)
|.+|.||---. +||-+.++. |+.-=.|-+|||||.| ||.+-.+.+
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 99999996221 788766665 4444459999999997 787655444
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.94 E-value=7.2e-08 Score=120.49 Aligned_cols=119 Identities=19% Similarity=0.141 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
..+--+++-++.-++--|....||.|||+.+.++++-..+ .|..+.|+ .+...||..-++...... ..+|.+||
T Consensus 76 r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVv--T~NdyLA~RD~e~m~pvy-~~LGLsvg 149 (870)
T CHL00122 76 RHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIV--TVNDYLAKRDQEWMGQIY-RFLGLTVG 149 (870)
T ss_pred CCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEE--eCCHHHHHHHHHHHHHHH-HHcCCcee
Confidence 3334456666666777889999999999988887754333 24444333 388889887776554332 23455555
Q ss_pred eEee----eccccCCCceEEEEcch-----HHHHHHhcCC---CCCCccEEEEecCC
Q 000991 380 YKVR----LEGMKGRDTRLMFCTTG-----ILLRRLLVDR---SLRGVTHVIVDEIH 424 (1197)
Q Consensus 380 y~ir----~e~~~~~~t~Ilv~Tpg-----~LLr~L~~d~---~L~~is~VIIDEaH 424 (1197)
.-.. .+....-.++|+|+|.. .|.+.+...+ ....+.+.|||||+
T Consensus 150 ~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 150 LIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred eeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 4322 12223356899999985 3444333222 45678899999999
No 144
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.82 E-value=5.3e-08 Score=113.58 Aligned_cols=109 Identities=20% Similarity=0.196 Sum_probs=93.8
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~ 655 (1197)
.+.++||-+-|++.++.|.++|... ++.+.++||++..-||..++...+.|...|||.-|.+-.|+|+|.|..
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~-------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsL 517 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSL 517 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc-------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeE
Confidence 4579999999999999999999987 889999999999999999999999999999999999999999999998
Q ss_pred EEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEe
Q 000991 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHL 704 (1197)
Q Consensus 656 VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~L 704 (1197)
|...+.-|+-. .+ |-.+.+|-+|||.|.-.|+++..
T Consensus 518 VAIlDADKeGF---LR----------se~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 518 VAILDADKEGF---LR----------SERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred EEEeecCcccc---cc----------ccchHHHHHHHHhhccCCeEEEE
Confidence 85533333211 11 55677799999999999998754
No 145
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.80 E-value=3.1e-07 Score=113.69 Aligned_cols=320 Identities=18% Similarity=0.184 Sum_probs=169.7
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccC-
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG- 389 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~- 389 (1197)
..+.+.+|-+|.||||||++..++-+.+- ....+++++.-|+.++.+++.++... .+...+-|..-.+....
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~----~~~~~VLvVShRrSL~~sL~~rf~~~---~l~gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALK----NPDKSVLVVSHRRSLTKSLAERFKKA---GLSGFVNYLDSDDYIIDG 119 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhcc----CCCCeEEEEEhHHHHHHHHHHHHhhc---CCCcceeeeccccccccc
Confidence 46789999999999999998887765431 34567888899999999999998543 11122233222111111
Q ss_pred CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCC--CCCC------hhHHHHHHHHHcccCccceEEEecccCCHHH-
Q 000991 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE--RGMN------EDFLLIVLKELLPRRPELRLILMSATLNAEL- 460 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe--R~~~------~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~- 460 (1197)
...+-+++.-..|.+.- .+.+.++++||||||-. +.+. ......+++.++... -++|+|-||++...
T Consensus 120 ~~~~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~a--k~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNA--KTVIVMDADLNDQTV 195 (824)
T ss_pred cccCeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhC--CeEEEecCCCCHHHH
Confidence 12344555555665532 34688899999999962 0011 122334455555533 37999999997652
Q ss_pred -HHhhhCC-CCccccCCc----ccceee-eehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHH
Q 000991 461 -FSSYFGG-APMLHIPGF----TYPVRA-YFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVED 533 (1197)
Q Consensus 461 -f~~yf~~-~pvi~i~gr----~~PV~~-~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~ 533 (1197)
|-+.+.+ .++..|.+. .|.-+. .++... +.+ .+..
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l-----------------~~~---------------------~l~~ 237 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSL-----------------GTD---------------------TLAA 237 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEeccc-----------------CcH---------------------HHHH
Confidence 2233333 333222211 122221 111110 000 0000
Q ss_pred HHHhhhhcchhhh-h----hhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCc
Q 000991 534 ALEAADFREYSVQ-T----QQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR 608 (1197)
Q Consensus 534 ~l~~~~~~~~~~~-~----~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~ 608 (1197)
.+...+ ...... + ...................++..+ ..+..|-||+.+..-.+.+++..... .
T Consensus 238 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~~-------~ 306 (824)
T PF02399_consen 238 ALNPED-ENADTSPTPKHSPDPTATAAISNDETTFFSELLARL---NAGKNICVFSSTVSFAEIVARFCARF-------T 306 (824)
T ss_pred HhCCcc-cccccCCCcCCCCccccccccccchhhHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHhc-------C
Confidence 000000 000000 0 000000000000011122223333 24567889999988888888877764 3
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHh
Q 000991 609 VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQ 688 (1197)
Q Consensus 609 ~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~Q 688 (1197)
..|+.++|.-+.. .+. . =++.+|++=|++...|+++.+..+=-.++..|...+ . -+..+..|
T Consensus 307 ~~Vl~l~s~~~~~---dv~-~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~-----g-------pd~~s~~Q 368 (824)
T PF02399_consen 307 KKVLVLNSTDKLE---DVE-S--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSY-----G-------PDMVSVYQ 368 (824)
T ss_pred CeEEEEcCCCCcc---ccc-c--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCC-----C-------CcHHHHHH
Confidence 4477777765544 222 1 356899999999999999975543222222221111 1 13446789
Q ss_pred hhcccCCCCCCeEEEecccc
Q 000991 689 RRGRAGRVQPGECYHLYPRY 708 (1197)
Q Consensus 689 R~GRAGR~~~G~cy~Lys~~ 708 (1197)
+.||.-.......|..+...
T Consensus 369 ~lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 369 MLGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred HHHHHHhhccCeEEEEEecc
Confidence 99999777777777766543
No 146
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.79 E-value=1.5e-06 Score=105.54 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=95.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCc-eE-EEEee
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGV-RK-IVLAT 641 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~-~k-VLVAT 641 (1197)
+..++..-.++ +..+|+|..++..+.-+...|... .++..+-+.|..+...|..+.++|.++. .. .|++|
T Consensus 535 l~~ll~~W~kq--g~rvllFsqs~~mLdilE~fL~~~------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 535 LAKLLKDWKKQ--GDRVLLFSQSRQMLDILESFLRRA------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred HHHHHHHHhhC--CCEEEEehhHHHHHHHHHHHHHhc------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 34444444443 359999999999888888888742 2677888999999999999999999765 33 46799
Q ss_pred cccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchhh
Q 000991 642 NMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDA 712 (1197)
Q Consensus 642 niaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~~ 712 (1197)
-+...|+|+-+.+-||- |||..|.++-. +++-|+=|-|-...=.+|||.+....+.
T Consensus 607 rvGGLGlNLTgAnRVII--------fDPdWNPStD~-------QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVII--------FDPDWNPSTDN-------QARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred cccccccccccCceEEE--------ECCCCCCccch-------HHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 99999999998888887 88888877554 5555555555555677899988766553
No 147
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.79 E-value=3.7e-08 Score=123.18 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=83.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC-Ccccceeee---Eeee---ccccCCCce
Q 000991 321 ETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG-EKLGESVGY---KVRL---EGMKGRDTR 393 (1197)
Q Consensus 321 pTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g-~~lg~~VGy---~ir~---e~~~~~~t~ 393 (1197)
.+|||||..+...+-+.+. .|.. ++++.|...++.|+.+++...+| ..+...... .-|. ........+
T Consensus 168 ~~GSGKTevyl~~i~~~l~---~Gk~--vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLR---AGRG--ALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred CCCCcHHHHHHHHHHHHHH---cCCe--EEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 3699999988887765442 2344 45555999999999999999887 433222111 0111 122335678
Q ss_pred EEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChh------HH-HHHHHHHcccCccceEEEecccCCHHHHHh
Q 000991 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNED------FL-LIVLKELLPRRPELRLILMSATLNAELFSS 463 (1197)
Q Consensus 394 Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D------~L-l~lLr~ll~~r~~lklIlmSATl~~~~f~~ 463 (1197)
|+|+|-.-++- .+.++.+|||||-|+-+...+ .- +.+++ ....+..+|+.|||...+.+..
T Consensus 243 IViGtRSAvFa------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~R---a~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 243 VVVGTRSAVFA------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLR---AHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred EEEEcceeEEe------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHH---HHHcCCcEEEECCCCCHHHHHH
Confidence 99999866553 688999999999995332221 11 11111 2235778999999999887654
No 148
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.64 E-value=6.7e-06 Score=102.45 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=78.0
Q ss_pred EEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCC--CceEE-EEeecccccccccCCEEEEE
Q 000991 581 LVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED--GVRKI-VLATNMAETSITINDVVFVI 657 (1197)
Q Consensus 581 LVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~--G~~kV-LVATniaEtGIdIPdV~~VI 657 (1197)
.|.+.....+.++.+.+... .++.++.+||.|+..+|+.+.+.|.+ +.-+| +++|-....||++=+..-||
T Consensus 598 ~v~Isny~~tldl~e~~~~~------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli 671 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI 671 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE
Confidence 34445566666666666554 16779999999999999999999854 33244 56788889999999888888
Q ss_pred eCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccch
Q 000991 658 DCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVY 710 (1197)
Q Consensus 658 d~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~ 710 (1197)
- ||+..|...- .|-++||=|.| +-..|+|.+....
T Consensus 672 l--------~D~dWNPa~d----------~QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390|consen 672 L--------FDPDWNPAVD----------QQAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred E--------eCCCCCchhH----------HHHHHHhccCCCcceEEEEEeecCCCc
Confidence 7 8877766543 38888888875 4667888876544
No 149
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.63 E-value=9.1e-07 Score=111.59 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=98.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCC---CceEEEEeecccccccccCC
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPED---GVRKIVLATNMAETSITIND 652 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~---G~~kVLVATniaEtGIdIPd 652 (1197)
.+.+||||-.-..-..-|+++|... ++..--+-|++..+-|+..++.|.. ...-.|+||-....|||+-.
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r-------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLR-------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHc-------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 4569999988888888899999875 5556678999999999999988853 45678999999999999998
Q ss_pred EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccchhh-hhhcCCccccccchhh
Q 000991 653 VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYDA-FADYQLPELLRTPLQS 728 (1197)
Q Consensus 653 V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~~~-l~~~~~PEIlr~~L~~ 728 (1197)
.+.||. ||...|.+.-+ |-..||-|.| .=.+|||+|+..|+. |.+-. -+..-|+.
T Consensus 771 ADTVII--------FDSDWNPQNDL----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~KmvLD~ 829 (1373)
T KOG0384|consen 771 ADTVII--------FDSDWNPQNDL----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKMVLDH 829 (1373)
T ss_pred cceEEE--------eCCCCCcchHH----------HHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHhhhHH
Confidence 888887 77776666444 5556666665 457899999998874 22211 12345666
Q ss_pred hhHHhhh
Q 000991 729 LCLQIKS 735 (1197)
Q Consensus 729 l~L~lk~ 735 (1197)
+++|...
T Consensus 830 aVIQ~m~ 836 (1373)
T KOG0384|consen 830 AVIQRMD 836 (1373)
T ss_pred HHHHhhc
Confidence 6666543
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=3.6e-06 Score=105.41 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
|-...+--+++-++.=++--|....||-|||+.+.++++-.++. |.++.|| | +..-||..=++.+.... .-+|.
T Consensus 82 lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~---GkgVhVV-T-vNdYLA~RDae~m~~vy-~~LGL 155 (939)
T PRK12902 82 LGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT---GKGVHVV-T-VNDYLARRDAEWMGQVH-RFLGL 155 (939)
T ss_pred hCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc---CCCeEEE-e-CCHHHHHhHHHHHHHHH-HHhCC
Confidence 33333445566666656667889999999999988888765543 3333333 3 67777766555443322 22345
Q ss_pred eeeeEee----eccccCCCceEEEEcchHH-----HHHHhcCC---CCCCccEEEEecCCC
Q 000991 377 SVGYKVR----LEGMKGRDTRLMFCTTGIL-----LRRLLVDR---SLRGVTHVIVDEIHE 425 (1197)
Q Consensus 377 ~VGy~ir----~e~~~~~~t~Ilv~Tpg~L-----Lr~L~~d~---~L~~is~VIIDEaHe 425 (1197)
+||.-.. .+....-.++|+|+|+.-| .+.+..+. ....+.+.|||||+.
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 5554221 2223345799999999766 44444322 457889999999993
No 151
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.62 E-value=3.4e-06 Score=107.36 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCC----CCCCceEEE
Q 000991 563 LIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDK----PEDGVRKIV 638 (1197)
Q Consensus 563 li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~----f~~G~~kVL 638 (1197)
.+...+..++. ..|.+|||+++.+..+.+++.|... . +..++ .++.. .+..+++. |..|...|+
T Consensus 522 ~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~--~----~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~VL 589 (697)
T PRK11747 522 EMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRD--L----RLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSVL 589 (697)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHh--c----CCcEE-EeCCc---hHHHHHHHHHHHhccCCCeEE
Confidence 34455566666 3455899999999999999998753 1 12232 34543 34455543 445778899
Q ss_pred EeecccccccccCC--EEEEEeCCCCCcccccCCC----------CCCCccc--cccCHhhHHhhhcccCCCC--CCeEE
Q 000991 639 LATNMAETSITIND--VVFVIDCGKAKETSYDALN----------NTPCLLP--SWISKAAARQRRGRAGRVQ--PGECY 702 (1197)
Q Consensus 639 VATniaEtGIdIPd--V~~VId~G~~k~~~yD~~~----------~~~~l~~--~~iSkas~~QR~GRAGR~~--~G~cy 702 (1197)
++|..+.+|||+|+ +++||-.++|-..--|+.. +-..+.. .+--...+.|-+||.=|.. .|..+
T Consensus 590 ~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ 669 (697)
T PRK11747 590 FGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVT 669 (697)
T ss_pred EEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEE
Confidence 99999999999995 8899999999532211110 0111110 1112234779999998985 47766
Q ss_pred Ee
Q 000991 703 HL 704 (1197)
Q Consensus 703 ~L 704 (1197)
.|
T Consensus 670 il 671 (697)
T PRK11747 670 IL 671 (697)
T ss_pred EE
Confidence 66
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.52 E-value=6.8e-06 Score=104.61 Aligned_cols=148 Identities=19% Similarity=0.192 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCce-EEEEeec
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR-KIVLATN 642 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~-kVLVATn 642 (1197)
+...+..+.... +|.+|||+|+.+..+.+.+.+...... .....+|..+..+ .++.|..+.- -++|+|.
T Consensus 467 ~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~------~~v~~q~~~~~~~---~l~~f~~~~~~~~lv~~g 536 (654)
T COG1199 467 LAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERST------LPVLTQGEDEREE---LLEKFKASGEGLILVGGG 536 (654)
T ss_pred HHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCcc------ceeeecCCCcHHH---HHHHHHHhcCCeEEEeec
Confidence 334455554443 569999999999999999999875211 2345666665553 4444443333 8999999
Q ss_pred ccccccccC--CEEEEEeCCCCCcccccC----------CCC--CCCccccccCHhhHHhhhcccCCCC--CCeEEEe--
Q 000991 643 MAETSITIN--DVVFVIDCGKAKETSYDA----------LNN--TPCLLPSWISKAAARQRRGRAGRVQ--PGECYHL-- 704 (1197)
Q Consensus 643 iaEtGIdIP--dV~~VId~G~~k~~~yD~----------~~~--~~~l~~~~iSkas~~QR~GRAGR~~--~G~cy~L-- 704 (1197)
.+.+|||+| ....||-.|+|-...-|+ ..+ .-.+...+..-....|-+||+=|.. .|.++.|
T Consensus 537 sf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 537 SFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred cccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 999999999 457788889986533222 111 1111222334456789999999974 3777776
Q ss_pred -ccccchhh-hhhcCCccc
Q 000991 705 -YPRYVYDA-FADYQLPEL 721 (1197)
Q Consensus 705 -ys~~~~~~-l~~~~~PEI 721 (1197)
|....|.. +.+.-.+.+
T Consensus 617 R~~~~~y~~~l~~~l~~~~ 635 (654)
T COG1199 617 RYATKRYGKLLLDSLPPFP 635 (654)
T ss_pred cchhhhHHHHHHHhCCCCc
Confidence 44444443 444333333
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=2.1e-06 Score=109.74 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCC---CCCceEEEeccCCCCHHHHHHhcCCCCC----Cce
Q 000991 563 LIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG---DPSRVLLLACHGSMASSEQRLIFDKPED----GVR 635 (1197)
Q Consensus 563 li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~---~~~~~~I~~lHs~L~~~er~~v~~~f~~----G~~ 635 (1197)
.+...|..+++.. +|.+|||+|+....+.+.+.+....... ....+.+-+ .+ ..++..+++.|.. |.-
T Consensus 509 ~l~~~i~~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~---~~~~~~~l~~f~~~~~~~~g 583 (705)
T TIGR00604 509 NLGELLVEFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KD---AQETSDALERYKQAVSEGRG 583 (705)
T ss_pred HHHHHHHHHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CC---cchHHHHHHHHHHHHhcCCc
Confidence 3445566665544 5889999999999999988877532111 001122222 11 1456677777743 455
Q ss_pred EEEEee--cccccccccCC--EEEEEeCCCCCcccccCCCCC------------CC-ccccccCHhhHHhhhcccCCCCC
Q 000991 636 KIVLAT--NMAETSITIND--VVFVIDCGKAKETSYDALNNT------------PC-LLPSWISKAAARQRRGRAGRVQP 698 (1197)
Q Consensus 636 kVLVAT--niaEtGIdIPd--V~~VId~G~~k~~~yD~~~~~------------~~-l~~~~iSkas~~QR~GRAGR~~~ 698 (1197)
-|++|+ ..+.+|||++| .+.||-.|+|-....|+.... .. ....+-.-....|-+||+=|...
T Consensus 584 avL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 584 AVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred eEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 699999 89999999996 688888999963322221100 00 00011122356699999999975
Q ss_pred --CeEEEe
Q 000991 699 --GECYHL 704 (1197)
Q Consensus 699 --G~cy~L 704 (1197)
|..+.+
T Consensus 664 D~G~iill 671 (705)
T TIGR00604 664 DYGSIVLL 671 (705)
T ss_pred ceEEEEEE
Confidence 544444
No 154
>COG4889 Predicted helicase [General function prediction only]
Probab=98.41 E-value=2.4e-06 Score=103.87 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=60.9
Q ss_pred ceEEEeccCCCCHHHHHHhcC---CCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHh
Q 000991 608 RVLLLACHGSMASSEQRLIFD---KPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1197)
Q Consensus 608 ~~~I~~lHs~L~~~er~~v~~---~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSka 684 (1197)
.+.+-...|.|+..+|...+. .|++..+|||-.--.+..|||+|..+-||- ||+.+.+-
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF--------f~pr~smV---------- 560 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF--------FDPRSSMV---------- 560 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE--------ecCchhHH----------
Confidence 344555668899888865443 567899999998999999999999999997 77766544
Q ss_pred hHHhhhcccCCCCCCeEE
Q 000991 685 AARQRRGRAGRVQPGECY 702 (1197)
Q Consensus 685 s~~QR~GRAGR~~~G~cy 702 (1197)
...|-.||..|..+|+-|
T Consensus 561 DIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 561 DIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred HHHHHHHHHHHhCcCCcc
Confidence 555999999999887654
No 155
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.34 E-value=3.3e-06 Score=104.76 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa 367 (1197)
+.|.+++.+++.+++.|+||+|||.++..+++..+... ...+|+|+.||++|+.|+.+.+.
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---PDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---cCceEEEECCcHHHHHHHHHHHH
Confidence 56777888899999999999999999999998876421 23578888899999999987554
No 156
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=98.31 E-value=1.8e-06 Score=75.86 Aligned_cols=63 Identities=32% Similarity=0.440 Sum_probs=54.8
Q ss_pred CChhHHHHHHHhcCCCCCccee-eeccCC---ceEEEEEEcC-eeeeccCCCchhhHHHHHHHHHHHHH
Q 000991 1106 NPKTDLQTVLARAGHGAPAYKT-KQLKNN---QFRSTVIFNG-LNFVGQPCGNKKLAEKDAAAEALLWL 1169 (1197)
Q Consensus 1106 ~~~~~l~~~~~~~~~~~p~~~~-~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1169 (1197)
||++.|+++.++.+...|.|.+ ...+++ .|+++|.++| ..+.|.- .|||.||.+||..||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g-~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEG-SSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999 545554 4999999999 6667765 599999999999999875
No 157
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.20 E-value=4.4e-05 Score=96.58 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=82.5
Q ss_pred CcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC-ceEEE-EeecccccccccCCEEE
Q 000991 578 GAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-VRKIV-LATNMAETSITINDVVF 655 (1197)
Q Consensus 578 g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G-~~kVL-VATniaEtGIdIPdV~~ 655 (1197)
.++||||.=+..+.-+.+-|.+.- ...+.-.-+.|+.++.+|.++.++|.++ .+.|+ ++|-+..-|+|+-+.+.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~----mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY----MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh----cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 489999999888888877776531 2244456789999999999999999988 77876 58899999999999999
Q ss_pred EEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccchh
Q 000991 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYD 711 (1197)
Q Consensus 656 VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~~ 711 (1197)
||-. +--|+|-+. .|-.-||-|.| -=.+|||+++...+
T Consensus 1417 VVFv----EHDWNPMrD--------------LQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1417 VVFV----EHDWNPMRD--------------LQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred EEEE----ecCCCchhh--------------HHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 9861 122333333 25555555554 45679998886644
No 158
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=98.20 E-value=4.1e-06 Score=73.46 Aligned_cols=62 Identities=32% Similarity=0.379 Sum_probs=52.9
Q ss_pred ChhHHHHHHHhcCCCCCcceeee-ccCC---ceEEEEEEcCee-eeccCCCchhhHHHHHHHHHHHHHc
Q 000991 1107 PKTDLQTVLARAGHGAPAYKTKQ-LKNN---QFRSTVIFNGLN-FVGQPCGNKKLAEKDAAAEALLWLR 1170 (1197)
Q Consensus 1107 ~~~~l~~~~~~~~~~~p~~~~~~-~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1197)
|++.|+++.++.|. .|.|.+.. .++. .|+++|.++|.. +.|. +.|||.||.+||..||..|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~-g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGE-GSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEec-cCCHHHHHHHHHHHHHHhcC
Confidence 78999999999999 89999865 3443 499999999954 4555 99999999999999999873
No 159
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=98.17 E-value=3e-06 Score=74.53 Aligned_cols=63 Identities=27% Similarity=0.323 Sum_probs=52.1
Q ss_pred ChhHHHHHHHhcCCCCCcceeeeccC----CceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHH
Q 000991 1107 PKTDLQTVLARAGHGAPAYKTKQLKN----NQFRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWL 1169 (1197)
Q Consensus 1107 ~~~~l~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1169 (1197)
|+++|+++.++.+...|.|.....++ ..|.++|.++|..|..--++|||.|+.+||..|++.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 68999999999997777776544443 2599999999999954445699999999999999987
No 160
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.16 E-value=0.0019 Score=75.61 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=65.9
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCc--eEEEEeecccccccccCC
Q 000991 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGV--RKIVLATNMAETSITIND 652 (1197)
Q Consensus 575 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~--~kVLVATniaEtGIdIPd 652 (1197)
.++.+.|||+.-..-.+.+...+... ++..+-+.|..++.+|....+.|.... .--|++-..+..|+|+..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r-------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tA 562 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR-------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTA 562 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc-------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeec
Confidence 45679999999988888888888775 555677899999999999999987543 334678889999999999
Q ss_pred EEEEEeCCCCC
Q 000991 653 VVFVIDCGKAK 663 (1197)
Q Consensus 653 V~~VId~G~~k 663 (1197)
...||-.-++.
T Consensus 563 a~~VVFaEL~w 573 (689)
T KOG1000|consen 563 ASVVVFAELHW 573 (689)
T ss_pred cceEEEEEecC
Confidence 99998755554
No 161
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=98.14 E-value=4.5e-06 Score=86.52 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=57.8
Q ss_pred CCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.|||+.||+.+|..+... .|.+ ...++.| |+++|.++|..+.--=++|||.||++||..||..|.+.
T Consensus 108 ~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 108 LNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 499999999999998877 7977 4445555 99999999998886678999999999999999998653
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.11 E-value=1.2e-05 Score=91.60 Aligned_cols=133 Identities=18% Similarity=0.076 Sum_probs=71.5
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCC-ceEEEecchHHHHHHHHHHHHHHHhCC-cccceeeeEeee-----
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGA-ACSIICTQPRRISAMAVSERVAAERGE-KLGESVGYKVRL----- 384 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~-~~~IivtqPrR~LA~qva~rVa~e~g~-~lg~~VGy~ir~----- 384 (1197)
..+..+++-++|+|||.++..++.. +....+.. ...++|+.|. .+..+....+...... .. ..+-|....
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISY-LKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHH-HHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhh-hhhccccccccceeEeecc-chhhhhhhhhccccccccc-cccccccccccccc
Confidence 5678899999999999888766652 22222211 1124444498 6667777777766532 22 111111111
Q ss_pred ccccCCCceEEEEcchHHH--------HHHhcCCCCCCccEEEEecCCCC-CCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 385 EGMKGRDTRLMFCTTGILL--------RRLLVDRSLRGVTHVIVDEIHER-GMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 385 e~~~~~~t~Ilv~Tpg~LL--------r~L~~d~~L~~is~VIIDEaHeR-~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
........+++++|.+.+. ..+. . -++++|||||+|.- +..+..... +..+ . ....++||||
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~---~-~~~~~vIvDEaH~~k~~~s~~~~~-l~~l-~---~~~~~lLSgT 171 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLK---Q-IKWDRVIVDEAHRLKNKDSKRYKA-LRKL-R---ARYRWLLSGT 171 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHH---T-SEEEEEEETTGGGGTTTTSHHHHH-HHCC-C---ECEEEEE-SS
T ss_pred cccccccceeeeccccccccccccccccccc---c-ccceeEEEeccccccccccccccc-cccc-c---cceEEeeccc
Confidence 1122346789999999988 2222 1 34899999999963 333333322 2222 2 4567899999
Q ss_pred C
Q 000991 456 L 456 (1197)
Q Consensus 456 l 456 (1197)
+
T Consensus 172 P 172 (299)
T PF00176_consen 172 P 172 (299)
T ss_dssp -
T ss_pred c
Confidence 7
No 163
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=98.11 E-value=5.6e-06 Score=86.45 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=57.2
Q ss_pred CCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|||+.||+.+++.+... .|.+...++.| |.++|.++|..|.---++|||.||.+||..||..|.+
T Consensus 109 kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 109 KNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred CChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 499999999999988764 55555666666 9999999999998678999999999999999999965
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.99 E-value=0.00032 Score=92.04 Aligned_cols=135 Identities=18% Similarity=0.129 Sum_probs=81.8
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc-eeeeEeee-ccccCCC
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE-SVGYKVRL-EGMKGRD 391 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~-~VGy~ir~-e~~~~~~ 391 (1197)
+.-+|.=-||||||... .++...+.+. .....|++++-|+.|-.|+.+.+...-....-. ...-.-.+ +......
T Consensus 274 ~~G~IWHtqGSGKTlTm-~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTM-FKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHH-HHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 45899999999999543 3444444443 345577777899999999998886542211110 00000000 0011124
Q ss_pred ceEEEEcchHHHHHHhcCC--C-CCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 392 TRLMFCTTGILLRRLLVDR--S-LRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~--~-L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
..|+|+|-+.+-..+.... . -..==+||+|||| |+-.. .+-..++..+ ++...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G-~~~~~~~~~~---~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYG-ELAKLLKKAL---KKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hcccc-HHHHHHHHHh---ccceEEEeeCCc
Confidence 5899999988876665431 1 1222378899999 75544 4444445443 346799999998
No 165
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.95 E-value=5.5e-05 Score=96.64 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=46.7
Q ss_pred CceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCC--CCChhHHHHHHHHHcccCccceEEEecccCC
Q 000991 391 DTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHER--GMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR--~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~ 457 (1197)
...|+++||.+|..-|.++. .+..++.|||||||.- +...-|+..+.+ ..+++.-|.+|||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr---~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYR---QKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHH---HhCCCcceEEecCCCc
Confidence 46799999999988777766 7899999999999942 122224433333 3456667999999984
No 166
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.87 E-value=2.8e-05 Score=77.47 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=67.1
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-cCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccC
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAA-RGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~ 389 (1197)
++++.++|.|++|+|||+.+-.++-+...... ......+.+..|...-...++..+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 35778999999999999888877765432211 1123344555566555677778887777654332
Q ss_pred CCceEEEEcch----HHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 390 RDTRLMFCTTG----ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 390 ~~t~Ilv~Tpg----~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
-.|.. .+.+.+... ...+|||||+|... . +-.+..++.+.. ..++++|+..-.
T Consensus 69 ------~~~~~~l~~~~~~~l~~~----~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRR----RVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHC----TEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhc----CCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEECh
Confidence 11222 233333322 22789999999732 3 555566677666 567776665543
No 167
>PRK12371 ribonuclease III; Reviewed
Probab=97.83 E-value=3.2e-05 Score=85.51 Aligned_cols=67 Identities=22% Similarity=0.174 Sum_probs=57.0
Q ss_pred CCChhHHHHHHHhcCCCCCcceee-eccCC---ceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTK-QLKNN---QFRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|||+.||++.++.+...|.|.+. ..++. .|+++|.++|..+.--=++|||.||++||..||+-|..
T Consensus 161 ~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 161 RDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 399999999999999999999984 43443 39999999998865347899999999999999988754
No 168
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.82 E-value=0.00069 Score=83.10 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=83.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCc-e-EEEEeecccccccccCCEE
Q 000991 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGV-R-KIVLATNMAETSITINDVV 654 (1197)
Q Consensus 577 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~-~-kVLVATniaEtGIdIPdV~ 654 (1197)
+.+||+|-.=-.-..-|...|... ++...-|.|+.+-.+|+.+++.|-..+ + -.|++|-...-|||+-..+
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l-------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An 849 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL-------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN 849 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc-------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc
Confidence 478999965444444444445444 566788999999999999999997543 3 4578999999999999888
Q ss_pred EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchh
Q 000991 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1197)
Q Consensus 655 ~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~ 711 (1197)
.||-.+.- |+|... -++.-|+-|.|-.+|=.+|+|+++...+
T Consensus 850 ~VIihD~d----FNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 850 TVIIHDID----FNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred eEEEeecC----CCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 88873332 333322 2566788888888899999999987765
No 169
>PF13245 AAA_19: Part of AAA domain
Probab=97.81 E-value=5.6e-05 Score=68.69 Aligned_cols=60 Identities=30% Similarity=0.413 Sum_probs=46.2
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 306 Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
|..++..++.++|.||.|||||+.+...+.+........ ...|+|+.|++.++..+.+++
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 344566577888899999999988887777665322233 557888899999999999888
No 170
>PRK00102 rnc ribonuclease III; Reviewed
Probab=97.74 E-value=5.7e-05 Score=83.45 Aligned_cols=67 Identities=31% Similarity=0.341 Sum_probs=59.0
Q ss_pred CCChhHHHHHHHhcCCCCCcceee-eccC---CceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTK-QLKN---NQFRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|||+.||+++++.|...|.|++. ..+. ..|+++|.++|..+..-.+.|||.||++||..|++-|++
T Consensus 158 ~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 158 KDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred CCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 599999999999999999999873 3333 349999999999898899999999999999999998864
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.72 E-value=1.2e-05 Score=100.38 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=98.4
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeee---EeeeccccCC
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY---KVRLEGMKGR 390 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy---~ir~e~~~~~ 390 (1197)
.++++-+|||+|||..+...+..... ..+.++++++.|-++++.+-+.+.....-.. |..++- .+.-+-..-.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~---~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~ 1019 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALS---YYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVR 1019 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhc---cCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhhee
Confidence 35677899999999988887765442 3455889999999999988887776655433 332221 1111111224
Q ss_pred CceEEEEcchHHHHHH---hcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc-----ccCccceEEEecccC-CHHHH
Q 000991 391 DTRLMFCTTGILLRRL---LVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL-----PRRPELRLILMSATL-NAELF 461 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L---~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll-----~~r~~lklIlmSATl-~~~~f 461 (1197)
+++|+++||...-... .....+.+++.+|+||+|.-|-+-.-.+.++..-. ...+.+|++++|--+ |+.++
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dl 1099 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDL 1099 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHH
Confidence 6889999997765433 33447889999999999964333111111111111 122456788877665 99999
Q ss_pred HhhhCCCCc
Q 000991 462 SSYFGGAPM 470 (1197)
Q Consensus 462 ~~yf~~~pv 470 (1197)
++|++-.+.
T Consensus 1100 a~wl~~~~~ 1108 (1230)
T KOG0952|consen 1100 ADWLNIKDM 1108 (1230)
T ss_pred HHHhCCCCc
Confidence 999985444
No 172
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.70 E-value=0.00017 Score=77.69 Aligned_cols=128 Identities=27% Similarity=0.352 Sum_probs=80.8
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCce
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~ 393 (1197)
++++++||||+||||.+......... ++....++++-..|+-|.+.-+.+++.+|.++.. .+.+ .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~~----~--- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ARTE----S--- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SSTT----S---
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecCCCCCccHHHHHHHHHHHhccccch-----hhcc----h---
Confidence 47889999999999999887765443 2666778888889999998888898887754211 1000 0
Q ss_pred EEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc-CccceEEEecccCCHHHH
Q 000991 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR-RPELRLILMSATLNAELF 461 (1197)
Q Consensus 394 Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~-r~~lklIlmSATl~~~~f 461 (1197)
.|..+++........+++++|+||-+. |+.....++.-++.++.. .+.--++.||||...+.+
T Consensus 67 ----~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 ----DPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ----CHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ----hhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 122223221111123568999999998 555554555555554443 455668899999965543
No 173
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00035 Score=82.64 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=80.5
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHH-ccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEA-ARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~-~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
..++++++||||+||||.+........... .++....++.+=+.|+.|...-..+++.+|.++ .+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~------------ 238 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KA------------ 238 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Ee------------
Confidence 356899999999999998876654433221 234556666666878888766666655555432 01
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCcc-ceEEEecccCCHHHHHhhhC
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPE-LRLILMSATLNAELFSSYFG 466 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~-lklIlmSATl~~~~f~~yf~ 466 (1197)
.-++.-+...+. .+.++++||||++. |.......+.-++.++. ..++ -.++.+|||...+.+.+.|.
T Consensus 239 -----~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 239 -----IESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred -----eCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 112333444333 24689999999998 44322223334444444 2233 36788999997776665553
No 174
>PRK12372 ribonuclease III; Reviewed
Probab=97.63 E-value=0.0001 Score=85.79 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHhcCCCCCcceeee-ccCCc---eEEEEEEcCeee--eccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTKQ-LKNNQ---FRSTVIFNGLNF--VGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~~-~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|||+.||++++..+...|.|++.. .++++ |.+.|.++|..+ .|. ++|||.||.+||..||+-|+.
T Consensus 151 ~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~-G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGS-GASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred CCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEE-eCCHHHHHHHHHHHHHHHHhc
Confidence 3899999999999999999999843 33333 999999999766 454 799999999999999999984
No 175
>PRK14718 ribonuclease III; Provisional
Probab=97.63 E-value=9.9e-05 Score=86.26 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=57.2
Q ss_pred CCChhHHHHHHHhcCCCCCcceeee-ccCCc---eEEEEEEcCeeeec-cCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTKQ-LKNNQ---FRSTVIFNGLNFVG-QPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~~-~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|+|+.||+++|..+...|.|.+.. .++++ |...|.++|..+.| -.++|||.||++||..||.-|+.
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~ 222 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTA 222 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 4999999999999999999999843 34444 99999999987743 24899999999999999999973
No 176
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.60 E-value=0.0025 Score=76.06 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=86.4
Q ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc--ccccccC
Q 000991 574 KERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA--ETSITIN 651 (1197)
Q Consensus 574 ~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia--EtGIdIP 651 (1197)
....+.+|||+|+.-+--++.+.|... .+....+|--.+..+-.++-..|..|+.+|++-|.=+ =+=..|-
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~-------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKE-------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhc-------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 456689999999999999999999865 5667778888888888888888999999999999643 2345678
Q ss_pred CEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCC----CCCCeEEEeccccchhh
Q 000991 652 DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGR----VQPGECYHLYPRYVYDA 712 (1197)
Q Consensus 652 dV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR----~~~G~cy~Lys~~~~~~ 712 (1197)
+|..||-+|+|....|-+ ++..+.+.... .....|..||++.+.-.
T Consensus 370 Gi~~viFY~~P~~p~fY~---------------El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYS---------------ELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred CCcEEEEECCCCChhHHH---------------HHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 999999988887655421 22233332221 24688999999865433
No 177
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.59 E-value=0.00026 Score=90.22 Aligned_cols=104 Identities=25% Similarity=0.329 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccC----
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---- 651 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIP---- 651 (1197)
.+.||||-+.+.+.-+.+..+|... ++..-.|++.....|-.-|-+.-..| .|-||||+|.+|.||-
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~-------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~ 697 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMR-------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPE 697 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc-------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchh
Confidence 4579999999999999999999876 33333344443344444444444444 5889999999999996
Q ss_pred ----CEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecc
Q 000991 652 ----DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1197)
Q Consensus 652 ----dV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys 706 (1197)
+=-+||-+.++. |+.--.|-+|||||.| ||.+-.+.+
T Consensus 698 V~e~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 698 VKAAGGLAIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred hHHcCCCEEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEEEE
Confidence 335677655555 6666679999999997 787655554
No 178
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.0037 Score=78.89 Aligned_cols=122 Identities=23% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
+-...+--+++-++.-+.--|.-.-||=|||+.+.+++.=..+. |. +.-+||.- -=||.--++...... ..+|.
T Consensus 77 lg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gk-gVhvVTvN-dYLA~RDae~m~~l~-~~LGl 150 (822)
T COG0653 77 LGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GK-GVHVVTVN-DYLARRDAEWMGPLY-EFLGL 150 (822)
T ss_pred cCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CC-CcEEeeeh-HHhhhhCHHHHHHHH-HHcCC
Confidence 33344446677777777777889999999998888777654442 22 33455432 223322222222211 23455
Q ss_pred eeeeEee----eccccCCCceEEEEcchHH-----HHHHhc---CCCCCCccEEEEecCC
Q 000991 377 SVGYKVR----LEGMKGRDTRLMFCTTGIL-----LRRLLV---DRSLRGVTHVIVDEIH 424 (1197)
Q Consensus 377 ~VGy~ir----~e~~~~~~t~Ilv~Tpg~L-----Lr~L~~---d~~L~~is~VIIDEaH 424 (1197)
+||..+. .+....-.++|+|+|..-| .+-+.. +....+..+.||||++
T Consensus 151 svG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 151 SVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred ceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 5664443 3334445789999998554 222221 2256678888888888
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.45 E-value=0.00033 Score=75.59 Aligned_cols=120 Identities=27% Similarity=0.319 Sum_probs=65.8
Q ss_pred HHHHHHHHHH-HcC-CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccccee
Q 000991 301 KERDALLKAI-SEN-QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV 378 (1197)
Q Consensus 301 ~~q~~Il~~I-~~~-~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~V 378 (1197)
..|.+++..+ .++ +.++|.|+.|+|||+.+- .+.+.+... ...|+++.||..++..+.+.. +...
T Consensus 4 ~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~-~~~~~~~~~----g~~v~~~apT~~Aa~~L~~~~----~~~a---- 70 (196)
T PF13604_consen 4 EEQREAVRAILTSGDRVSVLQGPAGTGKTTLLK-ALAEALEAA----GKRVIGLAPTNKAAKELREKT----GIEA---- 70 (196)
T ss_dssp HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHH-HHHHHHHHT----T--EEEEESSHHHHHHHHHHH----TS-E----
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHH-HHHHHHHhC----CCeEEEECCcHHHHHHHHHhh----Ccch----
Confidence 4456666666 433 588999999999998654 344444332 257888889999888766653 2111
Q ss_pred eeEeeeccccCCCceEEEEcchHHHHHHhc-----CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 379 GYKVRLEGMKGRDTRLMFCTTGILLRRLLV-----DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 379 Gy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~-----d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.|-..++..... .+.+...++|||||+-. ++...+..+++.+-. .+.|+|++-
T Consensus 71 ------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasm--v~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 71 ------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASM--VDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp ------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG---BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred ------------------hhHHHHHhcCCcccccccccCCcccEEEEecccc--cCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 111111110000 00155668999999985 555555555554433 356777765
Q ss_pred cc
Q 000991 454 AT 455 (1197)
Q Consensus 454 AT 455 (1197)
=+
T Consensus 129 D~ 130 (196)
T PF13604_consen 129 DP 130 (196)
T ss_dssp -T
T ss_pred Cc
Confidence 44
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.40 E-value=0.00031 Score=75.86 Aligned_cols=58 Identities=34% Similarity=0.400 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHH
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI 357 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~ 357 (1197)
-|....|...++++.+++.+++.||.|||||+.+....++.+.+ +..-+|+++-|...
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---GEYDKIIITRPPVE 60 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---TS-SEEEEEE-S--
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---CCCcEEEEEecCCC
Confidence 36778899999999999999999999999999999888887643 45568888777643
No 181
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.40 E-value=0.0011 Score=82.86 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc-CCceEEEecchHHHHHHHHHHHHHHHhCCcccceeee
Q 000991 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR-GAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1197)
Q Consensus 302 ~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~-g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy 380 (1197)
.|+..+.....++.++|+|+.|+||||.+...+.. +..... ....+|++++||--+|..+.+.+..... .++..
T Consensus 149 ~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~-l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 149 WQKVAVALALKSNFSLITGGPGTGKTTTVARLLLA-LVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHH-HHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 45555666667899999999999999877655432 222111 1124799999999998888777654331 11100
Q ss_pred EeeeccccCCCceEEEEcchHHHHHHh-------cCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 381 KVRLEGMKGRDTRLMFCTTGILLRRLL-------VDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 381 ~ir~e~~~~~~t~Ilv~Tpg~LLr~L~-------~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
. . ......+-..|--.|+.... .......+++|||||+=. ++...+..+++.+ .++.|+|++-
T Consensus 224 ---~-~-~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM--vd~~l~~~ll~al---~~~~rlIlvG 293 (586)
T TIGR01447 224 ---E-A-LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM--VDLPLMAKLLKAL---PPNTKLILLG 293 (586)
T ss_pred ---h-h-hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc--CCHHHHHHHHHhc---CCCCEEEEEC
Confidence 0 0 00000111223222222111 011233689999999985 5666555555533 4567888765
Q ss_pred c
Q 000991 454 A 454 (1197)
Q Consensus 454 A 454 (1197)
=
T Consensus 294 D 294 (586)
T TIGR01447 294 D 294 (586)
T ss_pred C
Confidence 3
No 182
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.38 E-value=0.023 Score=66.66 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHcCC-----eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 297 LPSYKERDALLKAISENQ-----VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~-----vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
+|+-++|.+.+..+.... --|+.-+-|-|||-|....+|... .+.. -+|+.|+.++ +|..+.+.....
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~ra~--tLVvaP~VAl-mQW~nEI~~~T~ 255 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----DRAP--TLVVAPTVAL-MQWKNEIERHTS 255 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----ccCC--eeEEccHHHH-HHHHHHHHHhcc
Confidence 688888999888875432 246778999999999887777632 2333 4444498765 677777766544
Q ss_pred CcccceeeeEeeecc-----ccCCCceEEEEcchHHHHHHhcCC--------------CCCC--ccEEEEecCC---CCC
Q 000991 372 EKLGESVGYKVRLEG-----MKGRDTRLMFCTTGILLRRLLVDR--------------SLRG--VTHVIVDEIH---ERG 427 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~-----~~~~~t~Ilv~Tpg~LLr~L~~d~--------------~L~~--is~VIIDEaH---eR~ 427 (1197)
|..--|.-.... ..-.+.+++.+|..++-....... .|.+ +--||+|||| +|.
T Consensus 256 ---gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~ 332 (791)
T KOG1002|consen 256 ---GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ 332 (791)
T ss_pred ---CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc
Confidence 222112111111 111357899999988866554311 2333 4569999999 455
Q ss_pred CChh
Q 000991 428 MNED 431 (1197)
Q Consensus 428 ~~~D 431 (1197)
.++.
T Consensus 333 snTA 336 (791)
T KOG1002|consen 333 SNTA 336 (791)
T ss_pred ccHH
Confidence 5543
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.38 E-value=0.00038 Score=83.58 Aligned_cols=63 Identities=19% Similarity=0.354 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcC-CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHH
Q 000991 300 YKERDALLKAISEN-QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA 367 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~-~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa 367 (1197)
..+|.+++....++ ...+|.||+|+|||+.+...|...+.. ..+|+|..|+.+++..+.+|+.
T Consensus 187 n~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 187 NSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHhc
Confidence 45667777766666 678899999999998877777665532 2479999999999999988753
No 184
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=97.34 E-value=0.00038 Score=76.35 Aligned_cols=65 Identities=29% Similarity=0.263 Sum_probs=55.5
Q ss_pred CCCChhHHHHHHHhcCCCCCcceee-eccCC---ceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHH
Q 000991 1104 GDNPKTDLQTVLARAGHGAPAYKTK-QLKNN---QFRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLW 1168 (1197)
Q Consensus 1104 ~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1168 (1197)
..|||+.|++++++.+...|.|.+. ..+.+ .|.++|.++|..+..--+.|||.||++||..|++=
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~ 219 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEK 219 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHh
Confidence 4599999999999999999999984 32332 49999999999996666999999999999999964
No 185
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=97.32 E-value=0.00048 Score=75.81 Aligned_cols=68 Identities=31% Similarity=0.327 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHhcCCCCCcceeeec-cCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTKQL-KNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.|||..||+++++.+..+|.|+...- ++-| |...|.++|....=--+++||.||+.||..||..|...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 69999999999999999999999554 3334 99999999944433358999999999999999998754
No 186
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=97.32 E-value=0.00057 Score=62.73 Aligned_cols=65 Identities=26% Similarity=0.394 Sum_probs=57.3
Q ss_pred CChhHHHHHHHhcCCCCCcceee-eccCCc---eEEEEEEcCeeee----------ccCCCchhhHHHHHHHHHHHHHc
Q 000991 1106 NPKTDLQTVLARAGHGAPAYKTK-QLKNNQ---FRSTVIFNGLNFV----------GQPCGNKKLAEKDAAAEALLWLR 1170 (1197)
Q Consensus 1106 ~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1197)
+|...|+++-++.+-+.|+|.+. ..++.+ |...|.++|..+. ++|+.+||.|.-.||.-||++|.
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 68899999999999999999995 445555 9999999999883 49999999999999999999883
No 187
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.31 E-value=0.0024 Score=80.41 Aligned_cols=121 Identities=21% Similarity=0.210 Sum_probs=84.5
Q ss_pred HHHHHHHhh--cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcC---CCCCCceEEEEe
Q 000991 566 HVLCHIVKK--ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFD---KPEDGVRKIVLA 640 (1197)
Q Consensus 566 ~ll~~i~~~--~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~---~f~~G~~kVLVA 640 (1197)
.++..|+-+ ..++.||.|+.-..-...+.++|.-. .+.-.-+-|....++|-..++ .+.......|++
T Consensus 713 ELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~-------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls 785 (1157)
T KOG0386|consen 713 ELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR-------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS 785 (1157)
T ss_pred HHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh-------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeee
Confidence 444444432 34689999987766666666666644 455667788888888876544 445567889999
Q ss_pred ecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccchh
Q 000991 641 TNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYD 711 (1197)
Q Consensus 641 TniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~~ 711 (1197)
|-....|+|+--.+.||- ||...+..... |+.-||-|.| .-.+++|.+-..++
T Consensus 786 tragglglNlQtadtvii--------fdsdwnp~~d~----------qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 786 TRAGGLGLNLQTADTVII--------FDSDWNPHQDL----------QAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred ecccccccchhhcceEEE--------ecCCCCchhHH----------HHHHHHHHhhchhheeeeeeehhhHHH
Confidence 999999999998888876 77666655443 7777777775 45677887765554
No 188
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.002 Score=75.71 Aligned_cols=128 Identities=21% Similarity=0.234 Sum_probs=77.9
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccC
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~ 389 (1197)
+..+.+++++||||+||||.+...........+. ....++.+-+-|+.+.+....+++.+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~--------------- 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPV--------------- 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCce---------------
Confidence 4568899999999999999887766554432111 233334343556666666666665554321
Q ss_pred CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc-CccceEEEecccCCHHHH
Q 000991 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR-RPELRLILMSATLNAELF 461 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~-r~~lklIlmSATl~~~~f 461 (1197)
..+-+++-+...+. .+.+.++|+||++- |....+.+...+..+... .+.-.++.+|||...+.+
T Consensus 198 ----~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 198 ----HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ----EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 11223333333332 35677999999997 444445666666665442 244568899999865543
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.28 E-value=0.0013 Score=82.34 Aligned_cols=137 Identities=22% Similarity=0.255 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
.+|+.++..+ ..++.++|+|++|+||||.+-..+.. +.+...+....|+++.||.-+|..+.+.+..... .++.
T Consensus 155 d~Qk~Av~~a-~~~~~~vItGgpGTGKTt~v~~ll~~-l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~--- 228 (615)
T PRK10875 155 DWQKVAAAVA-LTRRISVISGGPGTGKTTTVAKLLAA-LIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL--- 228 (615)
T ss_pred HHHHHHHHHH-hcCCeEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc---
Confidence 4555555554 46789999999999999887655433 3322233456788899999998888877754321 1110
Q ss_pred eEeeeccccCCCceEEEEcchHHHHHHhcC----------CCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceE
Q 000991 380 YKVRLEGMKGRDTRLMFCTTGILLRRLLVD----------RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1197)
Q Consensus 380 y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d----------~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lkl 449 (1197)
..+ .. .....-..| +-+.|... ...-.+++|||||+-. ++...+..+++. ..++.|+
T Consensus 229 ---~~~-~~-~~~~~~a~T---iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM--vd~~lm~~ll~a---l~~~~rl 295 (615)
T PRK10875 229 ---TDE-QK-KRIPEEAST---LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM--VDLPMMARLIDA---LPPHARV 295 (615)
T ss_pred ---chh-hh-hcCCCchHH---HHHHhCcCCCccchhhccccCCCCCeEEEChHhc--ccHHHHHHHHHh---cccCCEE
Confidence 000 00 000001122 22222111 1233568999999986 666666666554 3467788
Q ss_pred EEeccc
Q 000991 450 ILMSAT 455 (1197)
Q Consensus 450 IlmSAT 455 (1197)
|++-=.
T Consensus 296 IlvGD~ 301 (615)
T PRK10875 296 IFLGDR 301 (615)
T ss_pred EEecch
Confidence 887543
No 190
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.28 E-value=0.0032 Score=75.78 Aligned_cols=129 Identities=23% Similarity=0.253 Sum_probs=75.9
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
..+++++++||||+||||.+..+....... ..+..+.++-+-|-|..+.......+..++..+.
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--------------- 282 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--------------- 282 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE---------------
Confidence 457899999999999999887766544311 2234455555667787666555555554442210
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-c-CccceEEEecccCCHHHHHh
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-R-RPELRLILMSATLNAELFSS 463 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~-r~~lklIlmSATl~~~~f~~ 463 (1197)
...++.-+...+. .+.++++||||.+-....+. -....++.++. . .+.-.++++|||.....+.+
T Consensus 283 ----~~~~~~~l~~~l~---~~~~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 283 ----VVYDPKELAKALE---QLRDCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred ----ccCCHHhHHHHHH---HhCCCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 1123334444443 24578999999997322222 22333444433 2 34445788999997655543
No 191
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0031 Score=73.97 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=71.4
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
..+++.++||||+||||.+........ .++....++-+=|-|+.+.+.-...++..|..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv----------------- 299 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV----------------- 299 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-----------------
Confidence 347899999999999998876655322 334445555555777655544333433322111
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc-ccCccceEEEecccCCHH
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL-PRRPELRLILMSATLNAE 459 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll-~~r~~lklIlmSATl~~~ 459 (1197)
+...++..+.+.+..-..-.++++||||-+- |.....-++.-+..++ ...|+-.++.+|||....
T Consensus 300 --~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 300 --IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred --EecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 1122455665555322122368999999997 3333333333344444 344665567799998543
No 192
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.26 E-value=0.0044 Score=72.62 Aligned_cols=130 Identities=25% Similarity=0.275 Sum_probs=91.8
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
++++.++||||.||||.+.-......+. .......||-|=-.|+-|...-+..++.+|.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 8899999999999999887665554422 233445566666788888887788887777542
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccc-eEEEecccCCHHHHHhhhC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL-RLILMSATLNAELFSSYFG 466 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~l-klIlmSATl~~~~f~~yf~ 466 (1197)
.++-+|.-|...+. .+.++++|.||=+- |+........-|+.+.....++ -.+.+|||...+++.+-+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 23445555555554 57888999999998 7666667777777777655444 4678999997776665543
No 193
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.00084 Score=74.63 Aligned_cols=59 Identities=31% Similarity=0.379 Sum_probs=47.5
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHH
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI 357 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~ 357 (1197)
--|....|...+.++.++..+++.||+|||||+.+..+.++.+.. +...+|+++-|.-.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~---~~~~kIiI~RP~v~ 115 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH---KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeeEEEEeCCCCC
Confidence 367888999999999999999999999999999988888876643 23456777767643
No 194
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.18 E-value=0.015 Score=76.44 Aligned_cols=111 Identities=21% Similarity=0.272 Sum_probs=87.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC--ceEEEEeecccccccccCCEEEE
Q 000991 579 AVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG--VRKIVLATNMAETSITINDVVFV 656 (1197)
Q Consensus 579 ~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G--~~kVLVATniaEtGIdIPdV~~V 656 (1197)
++|||.+-.....-+...+... ++....++|+++..+|...++.|.++ ..-.+++|-.+..|+|.-..+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 7999999999998898888876 35588899999999999999999985 55677788899999999999999
Q ss_pred EeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchh
Q 000991 657 IDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1197)
Q Consensus 657 Id~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~ 711 (1197)
|. ||+..+.... .++..|+-|.|+..+=.+|++.++...+
T Consensus 786 i~--------~d~~wnp~~~-------~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 786 IL--------FDPWWNPAVE-------LQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred EE--------eccccChHHH-------HHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 98 6654444322 2445555555666677889999887754
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.14 E-value=0.0048 Score=61.34 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=23.0
Q ss_pred HHHHHHHHc--CCeEEEEecCCChHHHHHHHHHHHH
Q 000991 304 DALLKAISE--NQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 304 ~~Il~~I~~--~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
.++...+.. ++.++|.||+|+|||+.+- .+...
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~-~i~~~ 42 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLAR-AIANE 42 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHH-HHHHH
Confidence 445555555 7899999999999996444 44443
No 196
>PRK06526 transposase; Provisional
Probab=97.08 E-value=0.0032 Score=70.71 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=22.5
Q ss_pred HHHHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 308 KAISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 308 ~~I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+.+..+++++++||+|+|||+.+.....+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 44667889999999999999766554433
No 197
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.08 E-value=0.0015 Score=77.03 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=55.3
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCce
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~ 393 (1197)
++++|.|..|||||+.+...+.+. .....+....++| +...+...+.+.+..... .....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~--~n~~l~~~l~~~l~~~~~-----------------~~~~~ 61 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLC--GNHPLRNKLREQLAKKYN-----------------PKLKK 61 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEE--ecchHHHHHHHHHhhhcc-----------------cchhh
Confidence 578999999999997666555443 1122333344444 888888777776654430 01112
Q ss_pred EEEEcchHHHHHHh-cCCCCCCccEEEEecCCC
Q 000991 394 LMFCTTGILLRRLL-VDRSLRGVTHVIVDEIHE 425 (1197)
Q Consensus 394 Ilv~Tpg~LLr~L~-~d~~L~~is~VIIDEaHe 425 (1197)
..+..+..+...+. .......+++|||||||.
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHh
Confidence 23334444433322 334677899999999994
No 198
>PF05729 NACHT: NACHT domain
Probab=97.06 E-value=0.0011 Score=68.44 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=40.4
Q ss_pred EEEEecCCCCCCChh-----HHHHHHHHHccc--CccceEEEecccCCHHHHHhhhCCCCccccCCcc
Q 000991 417 HVIVDEIHERGMNED-----FLLIVLKELLPR--RPELRLILMSATLNAELFSSYFGGAPMLHIPGFT 477 (1197)
Q Consensus 417 ~VIIDEaHeR~~~~D-----~Ll~lLr~ll~~--r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~ 477 (1197)
+||||=++|-..... .+...+..++.. .++.++|+.|.+-....+.+++.....+.+++..
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 488888887543222 245556666654 6788988888877766677877766566665554
No 199
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.04 E-value=0.0049 Score=79.07 Aligned_cols=127 Identities=24% Similarity=0.213 Sum_probs=77.6
Q ss_pred hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
........|.+.+..+..+++++|+|+.|+||||.+- .+++.+... +....|+++.||--+|..+. +..|...
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~----e~~g~~a 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEEL--GGLLPVGLAAPTGRAAKRLG----EVTGLTA 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCceEEEEeCchHHHHHHH----HhcCCcc
Confidence 4466777888888888899999999999999998664 444443322 22246777889988776443 3333210
Q ss_pred cceeeeEeeeccccCCCceEEEEcchHHHHHHh------cCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLL------VDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 375 g~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~------~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
.|-..++.... ........++|||||++. ++...+..+++. ..++.|
T Consensus 393 ----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSM--vd~~~~~~Ll~~---~~~~~r 445 (720)
T TIGR01448 393 ----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSM--MDTWLALSLLAA---LPDHAR 445 (720)
T ss_pred ----------------------ccHHHHhhccCCccchhhhhccccCCEEEEecccc--CCHHHHHHHHHh---CCCCCE
Confidence 01111111000 001124578999999996 566666565553 235678
Q ss_pred EEEeccc
Q 000991 449 LILMSAT 455 (1197)
Q Consensus 449 lIlmSAT 455 (1197)
+|++--+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8887544
No 200
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0038 Score=72.97 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=77.6
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
..+++++++|||||||||.+....... . .++..+.++.+=|-|+.|...-...++..+..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l-~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv---------------- 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL-L--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL---------------- 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE----------------
Confidence 357889999999999999887766542 2 234455566666777766544443433322110
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccCCHHHHHhhh
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNAELFSSYF 465 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl~~~~f~~yf 465 (1197)
.+..+|.-+...+..-....++++||||=+- |+...+-++.-++.+.. ..|+.-++.+|||.......+.+
T Consensus 265 ---~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 ---IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred ---EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 0112455554444322234578999999997 33333334444444443 34666677889988665555543
No 201
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0048 Score=74.97 Aligned_cols=129 Identities=20% Similarity=0.244 Sum_probs=69.9
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccC
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~ 389 (1197)
+..+++++++||||+||||.+......... .+.+....++-+-+.|+.+..........+ |..+..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iL--------gv~v~~----- 412 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQL--------GIAVHE----- 412 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhccc--------CceeEe-----
Confidence 456899999999999999988766554332 122233444444466765544333332221 111110
Q ss_pred CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHHHHH
Q 000991 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFS 462 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~ 462 (1197)
..+++.+...+. .+.++++||||.+-. +.....+...+..+........+++++++.....+.
T Consensus 413 ------a~d~~~L~~aL~---~l~~~DLVLIDTaG~-s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 413 ------ADSAESLLDLLE---RLRDYKLVLIDTAGM-GQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred ------cCcHHHHHHHHH---HhccCCEEEecCCCc-chhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 113344444443 356789999999973 222223333333332223345688899987554433
No 202
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.017 Score=68.57 Aligned_cols=191 Identities=18% Similarity=0.154 Sum_probs=109.9
Q ss_pred CCCCCCCCcchhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEE
Q 000991 240 VGSTTNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVS 319 (1197)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~l~~~~~~~~~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~ 319 (1197)
.+++.+++.+........+..+..+....-.+..+.+.. ... .-..+.+..|+.+.|.+++....+.++++.
T Consensus 165 ~Gsl~~s~s~~~~~~k~~~~s~~~~s~~~i~s~~~kQ~l--~~~-----~~~~~K~s~pltalQ~~L~~~m~~YrDl~y- 236 (698)
T KOG2340|consen 165 LGSLIFSGSRDLQLPKSPDCSNLGESYRSIGSLELKQRL--LVE-----SGVDQKKSEPLTALQKELFKIMFNYRDLLY- 236 (698)
T ss_pred cccccccccccccccCCCCccchhhhhhhhHHHHHHHHH--HHh-----hcccccccCcchHHHHHHHHHHHhhhhhcc-
Confidence 445666666554444444444444433222222222211 111 112345789999999999999999999875
Q ss_pred ecCCCh---H--HHHHHHHHHHHHHHHc--------c------------------CCceEEEecchHHHHHHHHHHHHHH
Q 000991 320 GETGCG---K--TTQLPQYILESETEAA--------R------------------GAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 320 apTGSG---K--Ttq~pq~ILe~~~~~~--------~------------------g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
||++- + +..+.+.++.+++... + -.+.+|+++.|+|+.|-.+...+..
T Consensus 237 -~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis 315 (698)
T KOG2340|consen 237 -PTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLIS 315 (698)
T ss_pred -ccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCceEEEEecchHHHHHHHHHHHH
Confidence 55554 3 3466667777765321 0 0235677777999999999888776
Q ss_pred H-hCCcccce-ee--------eEee-------------------------------ecccc------CCCceEEEEcchH
Q 000991 369 E-RGEKLGES-VG--------YKVR-------------------------------LEGMK------GRDTRLMFCTTGI 401 (1197)
Q Consensus 369 e-~g~~lg~~-VG--------y~ir-------------------------------~e~~~------~~~t~Ilv~Tpg~ 401 (1197)
. .|..-|.. |- |... +..+. -...+|+||.|=-
T Consensus 316 ~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLG 395 (698)
T KOG2340|consen 316 LLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLG 395 (698)
T ss_pred HhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchh
Confidence 6 34433221 10 1110 00000 0356899999943
Q ss_pred HHHHHhc---CC-----CCCCccEEEEecCCCC-CCChhHHHHHHHHH
Q 000991 402 LLRRLLV---DR-----SLRGVTHVIVDEIHER-GMNEDFLLIVLKEL 440 (1197)
Q Consensus 402 LLr~L~~---d~-----~L~~is~VIIDEaHeR-~~~~D~Ll~lLr~l 440 (1197)
|+++.. +. .|+.+.++|||-+|-. .-+.+.++.++..+
T Consensus 396 -LRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHL 442 (698)
T KOG2340|consen 396 -LRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHL 442 (698)
T ss_pred -hhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHh
Confidence 355554 21 6889999999999932 13455666666554
No 203
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0099 Score=70.62 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=76.7
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
.+.+++++||||+||||.+..++..... ..|..+.++-+-+-|+.+.....+.+...|..+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~--~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~---------------- 283 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFL--HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY---------------- 283 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEecccchhhhHHHHHHHHHHhcCCCee----------------
Confidence 3567889999999999999988765433 2344555666668888888777777665553210
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc----CccceEEEecccCCHH---HHHhh
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR----RPELRLILMSATLNAE---LFSSY 464 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~----r~~lklIlmSATl~~~---~f~~y 464 (1197)
.+.....+...+. -.++++||||=+- |.....-.+.-+..++.. .+.-.++.||||...+ .+.+.
T Consensus 284 ---~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~ 355 (432)
T PRK12724 284 ---PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred ---ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 0001223344333 2578999999765 322222333333333332 2345688899999554 34444
Q ss_pred hC
Q 000991 465 FG 466 (1197)
Q Consensus 465 f~ 466 (1197)
|.
T Consensus 356 f~ 357 (432)
T PRK12724 356 YE 357 (432)
T ss_pred hc
Confidence 54
No 204
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.84 E-value=0.0011 Score=69.66 Aligned_cols=122 Identities=18% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeec--ccccccccCC-
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN--MAETSITIND- 652 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATn--iaEtGIdIPd- 652 (1197)
.+|.+|||+|+.+..+.+.+.+...... .++.+..- ...+...+++.|+.+.--|++|+. .+.+|||+|+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~---~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE---KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc---ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 4599999999999999999988764211 12223222 245667788888889999999998 9999999995
Q ss_pred -EEEEEeCCCCCcccccCCCCC----------C--CccccccCHhhHHhhhcccCCCCCCeEEEe
Q 000991 653 -VVFVIDCGKAKETSYDALNNT----------P--CLLPSWISKAAARQRRGRAGRVQPGECYHL 704 (1197)
Q Consensus 653 -V~~VId~G~~k~~~yD~~~~~----------~--~l~~~~iSkas~~QR~GRAGR~~~G~cy~L 704 (1197)
++.||-.|+|-....|+.... . .....+-.-....|-+||+=|.....+..+
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 888999999964333321100 0 001111223456799999999876444433
No 205
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.80 E-value=0.0048 Score=79.54 Aligned_cols=140 Identities=18% Similarity=0.241 Sum_probs=78.4
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHH-----HHhCCccc-ceeeeEeee
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVA-----AERGEKLG-ESVGYKVRL 384 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa-----~e~g~~lg-~~VGy~ir~ 384 (1197)
..+.++.+..+||+|||..+...|++.... -+..++|+++|+.+.-..+...+. ..+....+ ..+-+.+-.
T Consensus 57 ~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 57 DDKANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred CccceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 345789999999999999888888765432 233566666799888766665443 12222121 112222211
Q ss_pred ccc---------c-------------CCCceEEEEcchHHHHHHhc----C---------C--CCCC-ccEEEEecCCCC
Q 000991 385 EGM---------K-------------GRDTRLMFCTTGILLRRLLV----D---------R--SLRG-VTHVIVDEIHER 426 (1197)
Q Consensus 385 e~~---------~-------------~~~t~Ilv~Tpg~LLr~L~~----d---------~--~L~~-is~VIIDEaHeR 426 (1197)
... . ....+|+++|.++|-..... | | .+.. =-+|||||.|..
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 100 0 11468999999988542210 0 1 1111 137999999963
Q ss_pred CCChhHHHHHHHHHcccCccceEEEecccCCH
Q 000991 427 GMNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1197)
Q Consensus 427 ~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~ 458 (1197)
....... ..+...+|.. ++..|||.+.
T Consensus 214 ~~~~k~~----~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRDNKFY----QAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred CcchHHH----HHHHhcCccc-EEEEeeecCC
Confidence 2222222 2333344433 6779999854
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.78 E-value=0.0045 Score=73.29 Aligned_cols=102 Identities=21% Similarity=0.354 Sum_probs=60.3
Q ss_pred HHHHHHHHHH------HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHH--HHHHHHHhCC
Q 000991 301 KERDALLKAI------SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV--SERVAAERGE 372 (1197)
Q Consensus 301 ~~q~~Il~~I------~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qv--a~rVa~e~g~ 372 (1197)
..|+.+++.+ ..+.++.|.|+-|+|||+.+-. |.+. -+.....+++++||-++|..+ ...+-..++.
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~----~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i 78 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDY----LRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGI 78 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHH----hccccceEEEecchHHHHHhccCCcchHHhcCc
Confidence 4566666666 7788999999999999954432 2222 233445788899999998776 3444444443
Q ss_pred cccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCC
Q 000991 373 KLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE 425 (1197)
Q Consensus 373 ~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe 425 (1197)
.++.. . ....-+.....+. ..+.++++|||||+=.
T Consensus 79 ~~~~~--------~----~~~~~~~~~~~~~------~~l~~~~~lIiDEism 113 (364)
T PF05970_consen 79 PINNN--------E----KSQCKISKNSRLR------ERLRKADVLIIDEISM 113 (364)
T ss_pred ccccc--------c----cccccccccchhh------hhhhhheeeecccccc
Confidence 32211 0 0000000001111 1577889999999974
No 207
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.78 E-value=0.0032 Score=72.12 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=48.6
Q ss_pred HHHHHH----HHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC-CceEEEecchHHHHHHHHHHHH
Q 000991 300 YKERDA----LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 300 ~~~q~~----Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g-~~~~IivtqPrR~LA~qva~rV 366 (1197)
+..|.+ +.+.+.++..+++.+|||+|||+.+..+++..+...+.. ...+|+++.+|..+..|....+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 566666 666778899999999999999999999888765532221 1236777778888766664444
No 208
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.78 E-value=0.0032 Score=72.12 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=48.6
Q ss_pred HHHHHH----HHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC-CceEEEecchHHHHHHHHHHHH
Q 000991 300 YKERDA----LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 300 ~~~q~~----Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g-~~~~IivtqPrR~LA~qva~rV 366 (1197)
+..|.+ +.+.+.++..+++.+|||+|||+.+..+++..+...+.. ...+|+++.+|..+..|....+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 566666 666778899999999999999999999888765532221 1236777778888766664444
No 209
>PRK14974 cell division protein FtsY; Provisional
Probab=96.75 E-value=0.009 Score=69.61 Aligned_cols=125 Identities=23% Similarity=0.295 Sum_probs=68.0
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
..+++++|++|+||||.+..... .+. ..+..+.++-.-+.|..|.......+..+|..+.. + ....++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~-~l~--~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~dp 207 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY-YLK--KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGADP 207 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HHH--HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCCCH
Confidence 46899999999999997766553 232 23333333333355666655455565655543211 0 000010
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccCC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLN 457 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl~ 457 (1197)
..++.+.+.. ....++++||||.++ |......++.-|+.+.. ..|+..++.++||..
T Consensus 208 ------~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 208 ------AAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred ------HHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 0112222211 023467899999999 43333334444455443 457888999999984
No 210
>PRK08181 transposase; Validated
Probab=96.65 E-value=0.024 Score=64.15 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=61.9
Q ss_pred HHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccc
Q 000991 308 KAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGM 387 (1197)
Q Consensus 308 ~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~ 387 (1197)
+.+..+++++++||+|+|||..+.. +...+... | ..++++ +...+..++... ..
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~~--g--~~v~f~-~~~~L~~~l~~a----~~---------------- 154 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAA-IGLALIEN--G--WRVLFT-RTTDLVQKLQVA----RR---------------- 154 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHH-HHHHHHHc--C--Cceeee-eHHHHHHHHHHH----Hh----------------
Confidence 3566889999999999999965543 33333322 2 234443 223333333210 00
Q ss_pred cCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCCh---hHHHHHHHHHcccCccceEEEecccCCHHHHHhh
Q 000991 388 KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNE---DFLLIVLKELLPRRPELRLILMSATLNAELFSSY 464 (1197)
Q Consensus 388 ~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~---D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~y 464 (1197)
. .+...+++ .+.++++|||||++...... +.+..++..... . +-++++.-.+...+...
T Consensus 155 -~-------~~~~~~l~------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~-~s~IiTSN~~~~~w~~~ 216 (269)
T PRK08181 155 -E-------LQLESAIA------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYE---R-RSILITANQPFGEWNRV 216 (269)
T ss_pred -C-------CcHHHHHH------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---C-CCEEEEcCCCHHHHHHh
Confidence 0 01112233 24567899999998543332 234444433222 2 34566666677777777
Q ss_pred hCC
Q 000991 465 FGG 467 (1197)
Q Consensus 465 f~~ 467 (1197)
|++
T Consensus 217 ~~D 219 (269)
T PRK08181 217 FPD 219 (269)
T ss_pred cCC
Confidence 754
No 211
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.61 E-value=0.0051 Score=66.99 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCe-EEEEecCCChHHHHHHHHHHHHHH---HHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 300 YKERDALLKAISENQV-VVVSGETGCGKTTQLPQYILESET---EAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~v-vII~apTGSGKTtq~pq~ILe~~~---~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
...|.+.+..+..+.. .+|.||+|+|||+.+...+..... ........+|+++.|+..++..+.+++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3456667777777776 999999999999877765554311 01234456788888999999999999866
No 212
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.59 E-value=0.0043 Score=74.97 Aligned_cols=65 Identities=15% Similarity=0.316 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
...|...++.+.++...+|.||+|+|||....-.++. +... ....|+|.+|.-+++.|+|+.+.+
T Consensus 412 N~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyh-l~~~---~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 412 NASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYH-LARQ---HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred chHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHH-HHHh---cCCceEEEcccchhHHHHHHHHHh
Confidence 5678889999999999999999999999655544443 3333 334689999999999999998854
No 213
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.53 E-value=0.0027 Score=71.37 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=62.8
Q ss_pred EEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccc----cCCCc
Q 000991 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGM----KGRDT 392 (1197)
Q Consensus 317 II~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~----~~~~t 392 (1197)
|+...||=|||+.+.++..-.+ -.|..+-|++ ....||..=++.+...+ ..+|..||+....... ..-.+
T Consensus 94 laEm~TGEGKTli~~l~a~~~A---L~G~~V~vvT--~NdyLA~RD~~~~~~~y-~~LGlsv~~~~~~~~~~~r~~~Y~~ 167 (266)
T PF07517_consen 94 LAEMKTGEGKTLIAALPAALNA---LQGKGVHVVT--SNDYLAKRDAEEMRPFY-EFLGLSVGIITSDMSSEERREAYAA 167 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHHH---TTSS-EEEEE--SSHHHHHHHHHHHHHHH-HHTT--EEEEETTTEHHHHHHHHHS
T ss_pred eEEecCCCCcHHHHHHHHHHHH---HhcCCcEEEe--ccHHHhhccHHHHHHHH-HHhhhccccCccccCHHHHHHHHhC
Confidence 8899999999988877665444 3466677776 44556655555443333 2456666654432221 12247
Q ss_pred eEEEEcchHHHH-HHhc----CC---CCCCccEEEEecCCC
Q 000991 393 RLMFCTTGILLR-RLLV----DR---SLRGVTHVIVDEIHE 425 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr-~L~~----d~---~L~~is~VIIDEaHe 425 (1197)
+|+|+|.+-+.- .|.. .. ...++.++|||||+.
T Consensus 168 dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 168 DIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp SEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred cccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 899999977643 3332 11 257889999999994
No 214
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.53 E-value=0.016 Score=74.70 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHc-CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 297 LPSYKERDALLKAISE-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~-~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
..+...|.+.+..+.. ++.++|.|+.|+||||.+-. +.+.+.. ....|++++||-.+|..+.+ ..|..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~----~g~~V~~~ApTg~Aa~~L~~----~~g~~-- 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA----AGYRVIGAALSGKAAEGLQA----ESGIE-- 419 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh----CCCeEEEEeCcHHHHHHHHh----ccCCc--
Confidence 4556667777777665 68999999999999976544 4443322 23467777899877655532 22211
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHHHhcC-CCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD-RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d-~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
-.|-..++..+..+ ..+...++|||||+-. ++.+.+..+++.... .+.++|++-
T Consensus 420 --------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasM--v~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 420 --------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGM--VGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred --------------------eeeHHHHHhhhccCcccCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 01222222112222 2467889999999986 556656566554332 466777765
No 215
>PRK04296 thymidine kinase; Provisional
Probab=96.52 E-value=0.016 Score=62.35 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=21.8
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..++++||+|+||||.+..++....
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999988876543
No 216
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.43 E-value=0.0046 Score=70.81 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 301 ~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
..|.+++.. .++.++|.|..|||||+.+..-++..+. .+....-+|+|+.+|+.+|..+.+|+...++.
T Consensus 3 ~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~-~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 3 DEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLY-EGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHH-TSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhc-cccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 456777776 5788899999999999988776665443 33345567999999999999999999876543
No 217
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.41 E-value=0.078 Score=66.00 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=97.9
Q ss_pred HHhhcCCCHHHHHHHHHHHH--cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHH
Q 000991 292 EFRRSLPSYKERDALLKAIS--ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAE 369 (1197)
Q Consensus 292 ~~R~~LPi~~~q~~Il~~I~--~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e 369 (1197)
.+....|-..--++|=+.+. +.+-.++.+|=|+|||+.+..++.-.+.. . ..+|++|+|+...+.++.+++...
T Consensus 164 ~~np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~--Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 164 AFNPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--L--EIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred hcCcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--c--CCeEEEECCChhhHHHHHHHHHHH
Confidence 34444554444444433332 34566778999999998887766643321 2 358999999999999998887665
Q ss_pred hC---C-----ccccee---e--eEeeeccccC---CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHH
Q 000991 370 RG---E-----KLGESV---G--YKVRLEGMKG---RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFL 433 (1197)
Q Consensus 370 ~g---~-----~lg~~V---G--y~ir~e~~~~---~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~L 433 (1197)
+. . ..+..+ | ..+++..... ..+.|.|++.+. +...-.+++++|||||+. +..+.+
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~------~s~RG~~~DLLIVDEAAf--I~~~~l 311 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSP------NAARGQNPDLVIVDEAAF--VNPGAL 311 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecccC------CCcCCCCCCEEEEECccc--CCHHHH
Confidence 53 1 111111 1 1112211111 114666665431 111123568999999997 666777
Q ss_pred HHHHHHHcccCccceEEEecccCCHHHHHhhhCC
Q 000991 434 LIVLKELLPRRPELRLILMSATLNAELFSSYFGG 467 (1197)
Q Consensus 434 l~lLr~ll~~r~~lklIlmSATl~~~~f~~yf~~ 467 (1197)
..++-.+.. .+.++|++|.+-+++.+..++++
T Consensus 312 ~aIlP~l~~--~~~k~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 312 LSVLPLMAV--KGTKQIHISSPVDADSWISRVGE 343 (752)
T ss_pred HHHHHHHcc--CCCceEEEeCCCCcchHHHHhhh
Confidence 776665544 36789999999888877776654
No 218
>PRK09183 transposase/IS protein; Provisional
Probab=96.31 E-value=0.093 Score=59.25 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=22.0
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+..+.++++.||+|+|||+.+......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 677899999999999999877655433
No 219
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.044 Score=69.73 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=77.8
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCC-ceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGA-ACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~-~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
.++++.++||||+||||.+.......... .|. ...++-+-+-|+.+...-+.+++..|..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv---------------- 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRILGVPV---------------- 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHhCCCCc----------------
Confidence 46799999999999999887655443222 232 23333333567766555555555444321
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccCCHHHHH
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNAELFS 462 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl~~~~f~ 462 (1197)
.++.++..+...+. .+.++++||||=+- |+....-+...+..+.. ..|.-.++.+|||...+.+.
T Consensus 246 ---~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 ---HAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred ---cccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 11225666655554 35677999999998 44444445565665543 44666788999998766554
No 220
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.037 Score=66.28 Aligned_cols=130 Identities=20% Similarity=0.222 Sum_probs=76.3
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccC
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG 389 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~ 389 (1197)
+..++++.++||||+||||.+....-...... ......++..-..|+.+.+....+++.+|.++. +
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~----------- 253 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRH-GADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--S----------- 253 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--c-----------
Confidence 35788999999999999998875554333221 123344555556677777666666555543211 0
Q ss_pred CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC-ccceEEEecccCCHHHHHh
Q 000991 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLNAELFSS 463 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r-~~lklIlmSATl~~~~f~~ 463 (1197)
+-++.-+...+. .+.+.++|+||.+- |....+.+...++.+.... +.-.++.+|||...+.+.+
T Consensus 254 ------v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 254 ------IKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ------CCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 011222222222 36678999999974 4343344556666664433 3345678999986655444
No 221
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.19 E-value=0.031 Score=73.42 Aligned_cols=125 Identities=19% Similarity=0.161 Sum_probs=76.1
Q ss_pred cCCCHHHHHHHHHHHHc-CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 296 SLPSYKERDALLKAISE-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~-~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
.+.+...|.+.+..+.. +++++|+|..|+||||.. ..+.+.+.. ....|+.+.||-.+|..+.+ ..|..
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~----~G~~V~~~ApTGkAA~~L~e----~tGi~- 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA----AGYEVRGAALSGIAAENLEG----GSGIA- 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH----cCCeEEEecCcHHHHHHHhh----ccCcc-
Confidence 45667777777777666 568899999999999864 444443322 23467778899877755432 11110
Q ss_pred cceeeeEeeeccccCCCceEEEEcchHHHHHHhc-CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLV-DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 375 g~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~-d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
. .|-..|+..+.. ...+...++|||||+-. +.+..+..+++.... .+.|+|++-
T Consensus 414 -------a--------------~TI~sll~~~~~~~~~l~~~~vlIVDEASM--v~~~~m~~LL~~a~~--~garvVLVG 468 (988)
T PRK13889 414 -------S--------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGM--VGTRQLERVLSHAAD--AGAKVVLVG 468 (988)
T ss_pred -------h--------------hhHHHHHhhhcccccccccCcEEEEECccc--CCHHHHHHHHHhhhh--CCCEEEEEC
Confidence 0 122222221111 12466779999999995 666666666654433 567888876
Q ss_pred cc
Q 000991 454 AT 455 (1197)
Q Consensus 454 AT 455 (1197)
=+
T Consensus 469 D~ 470 (988)
T PRK13889 469 DP 470 (988)
T ss_pred CH
Confidence 44
No 222
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.023 Score=71.52 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=29.3
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
++.+...+.-..++++||||+|. +..+-...+||.+-.-.++.++|+.+
T Consensus 108 Ie~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 33333334445789999999996 45455556666554433455555544
No 223
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.10 E-value=0.028 Score=61.62 Aligned_cols=131 Identities=16% Similarity=0.215 Sum_probs=84.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHc---CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISE---NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~---~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~r 365 (1197)
-+++....+=+...|.++...+.+ +.+.+...-.|.|||+++. +++..++.++. .-++++| |. .|..|..+.
T Consensus 14 Ll~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LAdg~-~LvrviV--pk-~Ll~q~~~~ 88 (229)
T PF12340_consen 14 LLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALADGS-RLVRVIV--PK-ALLEQMRQM 88 (229)
T ss_pred HHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHcCCC-cEEEEEc--CH-HHHHHHHHH
Confidence 567788888888889888888865 5789999999999996654 55555554322 2333444 65 477777777
Q ss_pred HHHHhCCcccceeeeEeeeccccC-----------------CCceEEEEcchHHHHHHhc-------C------------
Q 000991 366 VAAERGEKLGESVGYKVRLEGMKG-----------------RDTRLMFCTTGILLRRLLV-------D------------ 409 (1197)
Q Consensus 366 Va~e~g~~lg~~VGy~ir~e~~~~-----------------~~t~Ilv~Tpg~LLr~L~~-------d------------ 409 (1197)
+...+|.-++..| |...|+.... ....|+++||+.++..... .
T Consensus 89 L~~~lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q 167 (229)
T PF12340_consen 89 LRSRLGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQ 167 (229)
T ss_pred HHHHHHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7776654333322 4444443322 2456999999887643221 1
Q ss_pred CCCCCccEEEEecCCC
Q 000991 410 RSLRGVTHVIVDEIHE 425 (1197)
Q Consensus 410 ~~L~~is~VIIDEaHe 425 (1197)
.++.+...=|+||+|+
T Consensus 168 ~~l~~~~rdilDEsDe 183 (229)
T PF12340_consen 168 KWLDEHSRDILDESDE 183 (229)
T ss_pred HHHHhcCCeEeECchh
Confidence 1344555668899996
No 224
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.09 E-value=0.011 Score=57.93 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.7
Q ss_pred CCeEEEEecCCChHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~IL 335 (1197)
++.++|.||+||||||.+...+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 57899999999999987765443
No 225
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.08 E-value=0.15 Score=62.73 Aligned_cols=123 Identities=14% Similarity=0.215 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHH-HHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCC---CCceEEEE
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSL-KDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPE---DGVRKIVL 639 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l-~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~---~G~~kVLV 639 (1197)
....+..++. . ...-+|.+..|..+-.+ ...|+.. ++....+||.+...+|+.+++.|. .|.+-.|+
T Consensus 734 ~l~~le~i~~-~-skeK~viVSQwtsvLniv~~hi~~~-------g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLl 804 (901)
T KOG4439|consen 734 VLEILETILT-S-SKEKVVIVSQWTSVLNIVRKHIQKG-------GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLL 804 (901)
T ss_pred HHHHHHHHhh-c-ccceeeehhHHHHHHHHHHHHHhhC-------CeeeeeecCccchhHHHHHHHHHHhccCCceEEEE
Confidence 3444555522 2 23345666777665443 4455554 566788999999999999998884 34666778
Q ss_pred eecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccch
Q 000991 640 ATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVY 710 (1197)
Q Consensus 640 ATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~ 710 (1197)
+=...+-|+|+-+-+++|-.|+. |+|. =-.++--|+=|.|-..+=..|++......
T Consensus 805 SLtAGGVGLNL~GaNHlilvDlH----WNPa-----------LEqQAcDRIYR~GQkK~V~IhR~~~~gTv 860 (901)
T KOG4439|consen 805 SLTAGGVGLNLIGANHLILVDLH----WNPA-----------LEQQACDRIYRMGQKKDVFIHRLMCKGTV 860 (901)
T ss_pred EEccCcceeeecccceEEEEecc----cCHH-----------HHHHHHHHHHHhcccCceEEEEEEecCcH
Confidence 88888999999999999875554 3321 11233345555555555666777655443
No 226
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.99 E-value=0.083 Score=59.89 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=66.5
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHH-HHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM-AVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~-qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
.++.+.++|++|+||||.+...... +. .++....++.+=+.|+.+. |+.. .+... |+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~--~~~~~v~~i~~D~~ri~~~~ql~~-~~~~~--------~~~~-------- 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FH--GKKKTVGFITTDHSRIGTVQQLQD-YVKTI--------GFEV-------- 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HH--HcCCeEEEEecCCCCHHHHHHHHH-Hhhhc--------CceE--------
Confidence 4589999999999999877654433 21 2334444555546664443 3332 22222 1111
Q ss_pred CceEEE-EcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHHH
Q 000991 391 DTRLMF-CTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAEL 460 (1197)
Q Consensus 391 ~t~Ilv-~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~ 460 (1197)
.. .++..+.+.+..-....++++||||-+=.-..+.+.+..+.+.+-...|+..++.+|||...+.
T Consensus 134 ----~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 134 ----IAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred ----EecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 11 1334443333211123468999999997321233444443333323346666778999985543
No 227
>PF13173 AAA_14: AAA domain
Probab=95.95 E-value=0.013 Score=58.66 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=21.8
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
++++++|.||.|+||||.+-+++-+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999888776543
No 228
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.013 Score=70.96 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 410 RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 410 ~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
+.-..+.++||||||. +..+....+|+.+-. |...+++.-||-
T Consensus 117 p~~g~~KV~IIDEah~--Ls~~A~NALLKtLEE--Pp~~viFILaTt 159 (484)
T PRK14956 117 PMGGKYKVYIIDEVHM--LTDQSFNALLKTLEE--PPAHIVFILATT 159 (484)
T ss_pred hhcCCCEEEEEechhh--cCHHHHHHHHHHhhc--CCCceEEEeecC
Confidence 3445788999999996 566666666666633 333444444443
No 229
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.88 E-value=0.096 Score=63.84 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=71.9
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
..++++.++||||+||||.+....-......+ +....++..-+-|+.|.+....+++.+|..+. +.
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~~----------- 319 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHG-ASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--AV----------- 319 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCCccchhHHHHHHHHHHHhCCCee--cc-----------
Confidence 35789999999999999988776644332221 12334444557778777777767666653211 00
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC-ccceEEEecccCCHHHHH
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLNAELFS 462 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r-~~lklIlmSATl~~~~f~ 462 (1197)
-+..-+...+. .+.+.++++||.+= |+.....+...+..+.... |.-.++.++||.....+.
T Consensus 320 ------~~~~Dl~~aL~---~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 320 ------KDAADLRLALS---ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred ------CCchhHHHHHH---hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 00111111221 46677899999975 4332222223333222211 333688899998665444
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.87 E-value=0.046 Score=63.70 Aligned_cols=116 Identities=21% Similarity=0.254 Sum_probs=59.2
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
.+..+++.|+||+|||..+. .|...++.. | ..|+++ +...+...+.. .. ++....
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~--g--~~V~y~-t~~~l~~~l~~----~~-------------~~~~~~-- 236 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR--G--KSVIYR-TADELIEILRE----IR-------------FNNDKE-- 236 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC--C--CeEEEE-EHHHHHHHHHH----HH-------------hccchh--
Confidence 46889999999999997543 455545432 2 245553 33333333221 10 000000
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC-ccceEEEecccCCHHHHHhhhC
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLNAELFSSYFG 466 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r-~~lklIlmSATl~~~~f~~yf~ 466 (1197)
.... ++ .+.+++++|||+++.- ..+++....+-.++..+ ..-+-+++|..++.+.+.+.|+
T Consensus 237 ------~~~~-~~------~l~~~DLLIIDDlG~e-~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 237 ------LEEV-YD------LLINCDLLIIDDLGTE-KITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred ------HHHH-HH------HhccCCEEEEeccCCC-CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 0000 22 3557899999999832 23333333333333322 1123466677777766666554
No 231
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.84 E-value=0.097 Score=60.84 Aligned_cols=128 Identities=23% Similarity=0.319 Sum_probs=69.9
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
.++++.++||+|+||||.+....... . ..+....++-.=+.|..|.+.....+...+. ++.... ...+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l--~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~~---~~~d 180 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY--K-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQK---EGAD 180 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--H-hcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEeC---CCCC
Confidence 46789999999999998876554332 1 2344444444445576665544445444442 211110 0011
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc-------ccCccceEEEecccCCHH
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL-------PRRPELRLILMSATLNAE 459 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll-------~~r~~lklIlmSATl~~~ 459 (1197)
+ .....+.+.. ....++++||||=+- |....+.++..|+.+. ...|+-.++.++||...+
T Consensus 181 p------a~~v~~~l~~-~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 181 P------ASVAFDAIQA-AKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred H------HHHHHHHHHH-HHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 1 0111121111 124678999999998 4444444444444433 344666789999998544
No 232
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=95.83 E-value=0.041 Score=62.48 Aligned_cols=140 Identities=19% Similarity=0.165 Sum_probs=76.9
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee-eEeeeccccCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG-YKVRLEGMKGR 390 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG-y~ir~e~~~~~ 390 (1197)
...-.+|--.||.||--++.-.|+++.+. |...-|.++ ..-.|-....+.+.. .|..-..... ..........-
T Consensus 61 ~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---Gr~r~vwvS-~s~dL~~Da~RDl~D-IG~~~i~v~~l~~~~~~~~~~~ 135 (303)
T PF13872_consen 61 SRAGFFLGDGTGVGKGRQIAGIILENWLR---GRKRAVWVS-VSNDLKYDAERDLRD-IGADNIPVHPLNKFKYGDIIRL 135 (303)
T ss_pred cCcEEEeccCCCcCccchhHHHHHHHHHc---CCCceEEEE-CChhhhhHHHHHHHH-hCCCcccceechhhccCcCCCC
Confidence 35567777789999999999999998863 333345554 444454443333432 2222111111 00111111122
Q ss_pred CceEEEEcchHHHHHHhcCC-----------CC-CC-ccEEEEecCCCCC-CCh-----hHHHHHHHHHcccCccceEEE
Q 000991 391 DTRLMFCTTGILLRRLLVDR-----------SL-RG-VTHVIVDEIHERG-MNE-----DFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~-----------~L-~~-is~VIIDEaHeR~-~~~-----D~Ll~lLr~ll~~r~~lklIl 451 (1197)
...|+|+|...|...-.... |+ .+ =.+||+||||+-. ... .-.-.....+....|+.|+|-
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY 215 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVY 215 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEE
Confidence 44699999988776543211 21 11 2489999999532 211 011122233444558889999
Q ss_pred ecccC
Q 000991 452 MSATL 456 (1197)
Q Consensus 452 mSATl 456 (1197)
+|||-
T Consensus 216 ~SATg 220 (303)
T PF13872_consen 216 ASATG 220 (303)
T ss_pred ecccc
Confidence 99996
No 233
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.83 E-value=0.0023 Score=67.52 Aligned_cols=117 Identities=24% Similarity=0.323 Sum_probs=55.8
Q ss_pred EEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeec-------cccC
Q 000991 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLE-------GMKG 389 (1197)
Q Consensus 317 II~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e-------~~~~ 389 (1197)
||+|+-|.|||+.+-+.+...+. . ...+|+||+|+...+..+.+.+...+. ..||..... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~---~-~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ---K-GKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---h-cCceEEEecCCHHHHHHHHHHHHhhcc-----cccccccccccccccccccc
Confidence 68999999999888766543221 1 226899999999998888765533322 223322110 1112
Q ss_pred CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCC
Q 000991 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~ 457 (1197)
....|-|..|..+... -...+++|||||=. +... +|+.++...+ .++||.|+.
T Consensus 72 ~~~~i~f~~Pd~l~~~------~~~~DlliVDEAAa--Ip~p----~L~~ll~~~~---~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE------KPQADLLIVDEAAA--IPLP----LLKQLLRRFP---RVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT----------SCEEECTGGG--S-HH----HHHHHHCCSS---EEEEEEEBS
T ss_pred ccceEEEECCHHHHhC------cCCCCEEEEechhc--CCHH----HHHHHHhhCC---EEEEEeecc
Confidence 3567888888776542 22458999999974 4444 3444444433 678888874
No 234
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.74 E-value=0.028 Score=70.62 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 404 r~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
..+...+.-..+.++||||||. +..+-...+||.+-.-.++.++|+.
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHhhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 3333344556789999999996 5566666777765544344555554
No 235
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.71 E-value=0.093 Score=63.41 Aligned_cols=123 Identities=21% Similarity=0.330 Sum_probs=68.3
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
..+++++|++|+||||.+...... +. ..+..+.++.+=+.|..|......++...+.++ .+ .. ...+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~-L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~-----~~-~~~d- 161 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY-FK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG-----DP-DNKD- 161 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee-----cC-CccC-
Confidence 458889999999999888766543 32 234555566665667766655555555544321 00 00 0000
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccCC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLN 457 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl~ 457 (1197)
....+.+.+.. +.+.++||||.+-....+ +-++.-++.+.. ..|+.-++.++||..
T Consensus 162 -----~~~i~~~al~~---~~~~DvVIIDTAGr~~~d-~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 162 -----AVEIAKEGLEK---FKKADVIIVDTAGRHALE-EDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred -----HHHHHHHHHHH---hhcCCEEEEECCCcccch-HHHHHHHHHHHHHhcccceeEEEecccc
Confidence 01222233321 233489999999632233 334444444432 346777888999874
No 236
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.017 Score=73.89 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 410 RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 410 ~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
+.-..+.++||||||. +..+....+||.+-.-.+++++|+.
T Consensus 115 P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 115 PSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred hhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 3345789999999997 5666666777766554445666664
No 237
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.63 E-value=0.041 Score=62.00 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=17.3
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
...++|+||+|+||||.+-.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 447899999999999877654
No 238
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.63 E-value=0.046 Score=62.48 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=53.9
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
..+++++++||||+||||.+...+....... .+..+.++-+=|-|+.+.......+...+..+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--------------- 255 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--------------- 255 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccchhHHHHHHHHHHHhCCcee---------------
Confidence 3567999999999999998876665433211 124555666667777665555555444442210
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecC
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEI 423 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEa 423 (1197)
...++.-+...+. .+.++++||||.+
T Consensus 256 ----~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 256 ----VARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred ----ccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 0113344444443 3456899999975
No 239
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.61 E-value=0.025 Score=71.69 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHc-CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 300 YKERDALLKAISE-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 300 ~~~q~~Il~~I~~-~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
...|.+.+..+.. ...++|.||+|+|||+.+...+...+ .. + .+|+|+.|+..++.++.+++..
T Consensus 159 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~--g--~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 159 NESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KR--G--LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-Hc--C--CCEEEEcCcHHHHHHHHHHHHh
Confidence 4444444444444 48999999999999988776665543 22 2 2789999999999999999864
No 240
>PRK08727 hypothetical protein; Validated
Probab=95.58 E-value=0.043 Score=60.90 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=14.9
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
+.+++.|++|||||..+-
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999996554
No 241
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.076 Score=66.20 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 409 d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
.+...++.++||||+|. ++......+||.+-.-.+++++|+.|-
T Consensus 119 ~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 119 APTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred chhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 34566789999999996 555666677776555445566666543
No 242
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.45 E-value=0.048 Score=68.60 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 409 d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.+...++.+|||||+|. +..+....+++.+-...+...+|+.+
T Consensus 114 ~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 114 APTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34567889999999996 44455555666654444566666654
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.45 E-value=0.095 Score=57.39 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.2
Q ss_pred cCCeEEEEecCCChHHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~IL 335 (1197)
.+..+++.||+|+|||+.+-.+.-
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999977755443
No 244
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.038 Score=65.54 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=28.6
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 404 r~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
..+...|...+..++||||+|. +..+....+++.+-...+..++|+.+
T Consensus 109 ~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 109 DNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 3333445566788999999996 34444445555554444455566643
No 245
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.41 E-value=0.09 Score=59.77 Aligned_cols=128 Identities=22% Similarity=0.304 Sum_probs=70.4
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
..++++++|++|+||||.+....... . ..+....++.+=+.|..+.+....+++.++..+ +... . ..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~-----~~~~--~--~~d 138 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV-----IKQK--E--GAD 138 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE-----EeCC--C--CCC
Confidence 35788899999999998877665432 2 234444455555667766655555655554221 0000 0 001
Q ss_pred ceEEEEcc-hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc-------ccCccceEEEecccCCHHH
Q 000991 392 TRLMFCTT-GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL-------PRRPELRLILMSATLNAEL 460 (1197)
Q Consensus 392 t~Ilv~Tp-g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll-------~~r~~lklIlmSATl~~~~ 460 (1197)
| ....+.+.. ....++++||||=+- |......++.-|+.+. ...++-.++.++||...+.
T Consensus 139 -------p~~~~~~~l~~-~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 139 -------PAAVAFDAIQK-AKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred -------HHHHHHHHHHH-HHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 1 122222211 123678999999987 3333333333333332 2236777899999975443
No 246
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.40 E-value=0.085 Score=58.09 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=17.8
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.++.++++||+|+|||+.+-.+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4678999999999999766533
No 247
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.034 Score=68.83 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
++..+...+...+..++||||+|. +..+....+++.+-.-.+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 444444455667889999999996 44455555555544433445555544
No 248
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.38 E-value=0.069 Score=60.35 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHH
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+.++..+..+..+++.||+|+|||+.+-..
T Consensus 11 ~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 11 TSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 4567777888999999999999999777543
No 249
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.38 E-value=0.08 Score=67.79 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=93.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCce--EEEEeecccccccccCCE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR--KIVLATNMAETSITINDV 653 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~--kVLVATniaEtGIdIPdV 653 (1197)
.+.++|||..-.....-|...|.-+ ++.-+-+.|....++|+...++|....+ ..|++|-....|||+-+.
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyH-------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgA 1347 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYH-------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGA 1347 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhc-------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccC
Confidence 4579999988777777777777766 6677788999999999999999976543 468899999999999999
Q ss_pred EEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchh
Q 000991 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1197)
Q Consensus 654 ~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~ 711 (1197)
+.||- ||...|.. =-+.+.-|+-|.|+++.=+.|||++....+
T Consensus 1348 DTVvF--------YDsDwNPt-------MDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1348 DTVVF--------YDSDWNPT-------MDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred ceEEE--------ecCCCCch-------hhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 99997 77766543 235778899999999999999999987665
No 250
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.37 E-value=0.094 Score=69.42 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=77.5
Q ss_pred cCCCHHHHHHHHHHH-HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 296 SLPSYKERDALLKAI-SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I-~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
...+...|.+.+..+ ..++.++|+|+.|+||||.+-. +.+.+.. .+..|+.+.|+--.|..+. +..|...
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~----~G~~V~g~ApTgkAA~~L~----e~~Gi~a 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA----AGYRVVGGALAGKAAEGLE----KEAGIQS 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH----cCCeEEEEcCcHHHHHHHH----HhhCCCe
Confidence 456777777777766 4588999999999999976653 4443322 2346777789977765543 3333211
Q ss_pred cceeeeEeeeccccCCCceEEEEcchHH-HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 375 GESVGYKVRLEGMKGRDTRLMFCTTGIL-LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 375 g~~VGy~ir~e~~~~~~t~Ilv~Tpg~L-Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.|-..+ ++.-.....+..-++|||||+.. +.+..+..+++.+.. .+.|+|++-
T Consensus 450 ----------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsM--v~~~~m~~Ll~~~~~--~garvVLVG 503 (1102)
T PRK13826 450 ----------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGM--VASRQMALFVEAVTR--AGAKLVLVG 503 (1102)
T ss_pred ----------------------eeHHHHHhhhccCccCCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 111111 11111122466778999999995 677777777666532 467888876
Q ss_pred cc
Q 000991 454 AT 455 (1197)
Q Consensus 454 AT 455 (1197)
=+
T Consensus 504 D~ 505 (1102)
T PRK13826 504 DP 505 (1102)
T ss_pred CH
Confidence 44
No 251
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.29 E-value=0.048 Score=66.59 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=30.4
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 404 r~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
......|....+.++||||+|. +..+-...+++.+-.-.+...+|+.+
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3344455677899999999996 44445555666655444455555543
No 252
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.28 E-value=0.033 Score=59.25 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 309 AISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
.+.+++++++.|+||+|||..+...+.+
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHH
Confidence 3567889999999999999766544433
No 253
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.087 Score=62.06 Aligned_cols=50 Identities=24% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
.+.+...+...+..+|||||+|. ++..-...+|+.+-.-.++..+|++|.
T Consensus 130 ~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 130 GHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred HHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 34444444566789999999997 566556666666644334455666653
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.20 E-value=0.11 Score=58.22 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=35.1
Q ss_pred CCCccEEEEecCCCCCCChhHHHHHHHHHcccC-ccceEEEecccCCHHHHHhhhCC
Q 000991 412 LRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLNAELFSSYFGG 467 (1197)
Q Consensus 412 L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r-~~lklIlmSATl~~~~f~~yf~~ 467 (1197)
+.++++|||||++.-. .+++-..++-.++..| .+.+-+++|.-++.+.+.+.+++
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 5578999999999543 4555444444444433 22345666666777878777764
No 255
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.044 Score=68.36 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=28.1
Q ss_pred eCcEEEEEechhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 000991 1010 LGGYLEFFMKPELADTYLSLKREIEELTQQKLLNPEL 1046 (1197)
Q Consensus 1010 ~d~~~~~~~~~~~~~~~~~lr~~l~~~l~~k~~~p~~ 1046 (1197)
++|--.|..+.+.-.++.+|+..|...|....-+-..
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (702)
T PRK14960 611 IGGNTVFHIPQEYENMLTQLQQALIEALKQQWPNTQF 647 (702)
T ss_pred ccceEEEecHHHHHHHHHHHHHHHHHHHHhhCCCCee
Confidence 4666778888888888888888888888766644443
No 256
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.09 E-value=0.15 Score=61.17 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=68.8
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
..+++++|++|+||||.+...... +. .+|..+.++.+=|.|..|....+..++..+.++ |....+ .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~--l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-----~~~~~~----~-- 165 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY--YQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-----YGSYTE----S-- 165 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-----EeecCC----C--
Confidence 357889999999999888765542 22 345556666666778777665554544333221 101000 0
Q ss_pred eEEEEcc-hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccC
Q 000991 393 RLMFCTT-GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATL 456 (1197)
Q Consensus 393 ~Ilv~Tp-g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl 456 (1197)
.| .+..+.+..- .-.++++||||=+- |....+-++.-+..+.. ..|+..++.++||.
T Consensus 166 -----dp~~i~~~~l~~~-~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 166 -----DPVKIASEGVEKF-KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred -----CHHHHHHHHHHHH-HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 11 1111111110 11468999999997 43333334444444433 34677788899997
No 257
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.044 Score=67.64 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=27.8
Q ss_pred CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 409 d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.+.-..+.++||||||. +..+..-.+++.+-.-.++..+|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 34456789999999996 45555566666554444455666543
No 258
>PRK08116 hypothetical protein; Validated
Probab=95.02 E-value=0.077 Score=60.19 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=19.7
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETE 340 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~ 340 (1197)
+..+++.|++|+|||..+. .|...+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 4569999999999996554 45555543
No 259
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.14 Score=66.53 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=28.5
Q ss_pred CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 409 d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.+....+.++||||+|. +..+-...+|+.+-.-...+.+|+.+
T Consensus 115 ~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 115 APAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred chhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34557889999999997 55555556666555444455566654
No 260
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.99 E-value=0.098 Score=60.91 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=22.5
Q ss_pred HHHHHHHHcCC--eEEEEecCCChHHHHHHHHH
Q 000991 304 DALLKAISENQ--VVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 304 ~~Il~~I~~~~--vvII~apTGSGKTtq~pq~I 334 (1197)
+.+..++..++ .+++.||+|+|||+.+-.+.
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 44444455555 79999999999998776554
No 261
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.90 E-value=0.084 Score=56.37 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
.+.+...+......+|||||+|. +..+....+++.+-...++..+|+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~--l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAER--MNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 45555556677889999999996 4444444444444333334444444
No 262
>PRK10867 signal recognition particle protein; Provisional
Probab=94.90 E-value=0.16 Score=61.28 Aligned_cols=125 Identities=19% Similarity=0.211 Sum_probs=69.9
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
..+++++|++||||||.+..+..... . ..|..+.++..=+.|..|....+.+++..|.++- .. . ..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~-~-~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~-----~~---~-~~--- 165 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLK-K-KKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF-----PS---G-DG--- 165 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-H-hcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE-----ec---C-CC---
Confidence 35788999999999998877665322 1 2255666777778888877555555554442211 00 0 00
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATL 456 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl 456 (1197)
..|.-+...........++++||||=+=. ....+.+...+..+.. ..|+--++.++|+.
T Consensus 166 ----~dp~~i~~~a~~~a~~~~~DvVIIDTaGr-l~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 ----QDPVDIAKAALEEAKENGYDVVIVDTAGR-LHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCC-cccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 12333332222111245689999998873 2222333343333332 23555577888887
No 263
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.82 E-value=0.16 Score=60.80 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=18.7
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
..+++|+||+|+|||+.+- .+++.+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~-~v~~~l 79 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK-KVFEEL 79 (394)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 3679999999999997654 444444
No 264
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.81 E-value=0.14 Score=62.41 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=24.0
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEec
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivt 352 (1197)
+.+++.||+|+|||+.+ +.+...+... .+...++++
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--~~~~~v~yi 184 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK--NPNAKVVYV 184 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh--CCCCeEEEE
Confidence 56899999999999654 4555555432 234566665
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.79 E-value=0.05 Score=57.60 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=26.5
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecc
Q 000991 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivtq 353 (1197)
+++|.||+|+|||+.+.+++.+.+. .|..+.++-+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECC
Confidence 4789999999999999999887652 34445544443
No 266
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.76 E-value=0.13 Score=64.48 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=30.3
Q ss_pred HHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 405 RLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 405 ~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.+...+....+.++||||+|. +..+-...+|+.+-.-.+.+.+|+.+
T Consensus 109 ~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 109 RAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 334445667899999999996 45555556666555444455555544
No 267
>PRK06893 DNA replication initiation factor; Validated
Probab=94.75 E-value=0.13 Score=56.92 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=27.3
Q ss_pred CCCccEEEEecCCCCCCChh---HHHHHHHHHcccCccceEEEecccCCHHH
Q 000991 412 LRGVTHVIVDEIHERGMNED---FLLIVLKELLPRRPELRLILMSATLNAEL 460 (1197)
Q Consensus 412 L~~is~VIIDEaHeR~~~~D---~Ll~lLr~ll~~r~~lklIlmSATl~~~~ 460 (1197)
+.+.++|||||+|....+.+ .+..++..... .+.++|++|++..+..
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~ 138 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHA 138 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHH
Confidence 45678999999995332222 33344443322 2334678888875543
No 268
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.078 Score=65.85 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 404 r~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
..+...|...++.++||||+|. +..+..-.+++.+-...+...+|+.+
T Consensus 109 ~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 109 DNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 3334445667889999999996 44444555666655544456666644
No 269
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.65 E-value=0.17 Score=59.78 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=18.9
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
...++|+||+|+|||+.+ ..+++.+
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 368999999999999665 4555544
No 270
>PRK05642 DNA replication initiation factor; Validated
Probab=94.64 E-value=0.11 Score=57.67 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=17.3
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
..++++|++|+|||.. .+.+...+
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~ 69 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRF 69 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 6789999999999965 33444433
No 271
>PHA02244 ATPase-like protein
Probab=94.55 E-value=0.2 Score=58.82 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHH
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
...+...+..+..+++.||||||||+.+-..
T Consensus 109 ~~ri~r~l~~~~PVLL~GppGtGKTtLA~aL 139 (383)
T PHA02244 109 TADIAKIVNANIPVFLKGGAGSGKNHIAEQI 139 (383)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 3456677788999999999999999766543
No 272
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.47 E-value=0.21 Score=62.76 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
++..+...+....+.+|||||+|. +..+-...+++.+-.-.++..+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 344445556778899999999997 44444555555544444556666654
No 273
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.47 E-value=0.088 Score=64.93 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=27.4
Q ss_pred HhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 406 LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 406 L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
+...+......+|||||+|. +..+.+..+++.+-...+...+|+.
T Consensus 108 ~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 33345667889999999995 4445555566555443334444443
No 274
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.46 E-value=0.15 Score=61.41 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHH
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq 332 (1197)
.+.++.++..++++++.||+|+|||+.+-.
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 356777788899999999999999987754
No 275
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.44 E-value=0.33 Score=50.97 Aligned_cols=124 Identities=21% Similarity=0.282 Sum_probs=60.3
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCceE
Q 000991 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRL 394 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~I 394 (1197)
++++.|++|+||||.+..+... +. ..+....++-.-++|..+.....+.+...+. .+.... . .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~-~~--~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~--------~~~~~~--~-~--- 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY-LK--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGV--------PVFEEG--E-G--- 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HH--HCCCcEEEEEcCCCChHHHHHHHHhcccCCe--------EEEecC--C-C---
Confidence 5789999999999887655543 22 2233444444446654443322222222221 111100 0 0
Q ss_pred EEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccCCH
Q 000991 395 MFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNA 458 (1197)
Q Consensus 395 lv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl~~ 458 (1197)
..+..++........-.++++||||.......+.+.+ ..++.+.. ..++--++.++|+...
T Consensus 65 --~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l-~~l~~l~~~~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 65 --KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLM-EELKKIKRVVKPDEVLLVVDAMTGQ 126 (173)
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHH-HHHHHHHhhcCCCeEEEEEECCCCh
Confidence 0122222111111123467899999998543433333 33344433 2356667778886543
No 276
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.41 E-value=0.26 Score=59.52 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=69.0
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCce
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~ 393 (1197)
.+++++|++|+||||.+..+..... ...+..+.++.+=++|..|....++.+...+.++- .. . ...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~--~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~-----~~---~-~~~--- 165 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLK--KKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF-----AL---G-KGQ--- 165 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE-----ec---C-CCC---
Confidence 4788999999999998877665422 12355566666668888776666656554443211 00 0 000
Q ss_pred EEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccC
Q 000991 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATL 456 (1197)
Q Consensus 394 Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl 456 (1197)
.|.-+...........++++||||=+- |....+.++..+..+.. ..|+--++.++||.
T Consensus 166 ----~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 166 ----SPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred ----CHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 121121111111123567899999887 33333334444444433 23555577788886
No 277
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.41 E-value=0.16 Score=64.40 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=73.8
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh---CCcccceeeeEeeec--ccc
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER---GEKLGESVGYKVRLE--GMK 388 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~---g~~lg~~VGy~ir~e--~~~ 388 (1197)
+.++|+|.-|=|||..+-+.+.-.. ... ....|+||.|+.+.+.++.+..-+-+ |.+.+ |-+....+ ...
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~--~~~-~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~--v~~d~~g~~~~~~ 306 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAA--RLA-GSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRK--VAPDALGEIREVS 306 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHH--Hhc-CCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccc--cccccccceeeec
Confidence 3899999999999988887773222 111 25789999999999988877553332 22211 10100000 011
Q ss_pred CCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCC
Q 000991 389 GRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1197)
Q Consensus 389 ~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~ 457 (1197)
.....|-|..|.... ..-++||||||=- +...++..+++ .. +.++||.|+.
T Consensus 307 ~~~~~i~y~~P~~a~---------~~~DllvVDEAAa--IplplL~~l~~----~~---~rv~~sTTIh 357 (758)
T COG1444 307 GDGFRIEYVPPDDAQ---------EEADLLVVDEAAA--IPLPLLHKLLR----RF---PRVLFSTTIH 357 (758)
T ss_pred CCceeEEeeCcchhc---------ccCCEEEEehhhc--CChHHHHHHHh----hc---CceEEEeeec
Confidence 123457777775443 1157999999974 55555544443 22 3799999984
No 278
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.41 E-value=0.27 Score=62.86 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=17.7
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
.+++|.|+||+|||+.+- ++++.+.
T Consensus 782 nvLYIyG~PGTGKTATVK-~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVY-SVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 345699999999996554 4555543
No 279
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.41 E-value=0.11 Score=63.83 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=79.1
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc--cceeeeEeeeccccCCC
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL--GESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l--g~~VGy~ir~e~~~~~~ 391 (1197)
+.+++.-|=|.|||+.+....+-.++..+ .....|+++++++.-|..+...+........ ....+..+ .....
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~~~----~~~~~ 97 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDG-EPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKKPKI----IKSNK 97 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCC-ccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchhhhh----hhhhc
Confidence 45777779999999877665554443222 2346799999999999999887766543221 11111111 01112
Q ss_pred ceEEEEcchHHHHHHhcCC-C--CCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe-cccC
Q 000991 392 TRLMFCTTGILLRRLLVDR-S--LRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM-SATL 456 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~-~--L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm-SATl 456 (1197)
..|.+-.++..++.+.+++ . =.+.+++|+||+|+. ..+-+...++.-+..+++..++.. ||..
T Consensus 98 ~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~--~~~~~~~~l~~g~~~r~~pl~~~ISTag~ 164 (477)
T PF03354_consen 98 KEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH--KDDELYDALESGMGARPNPLIIIISTAGD 164 (477)
T ss_pred eEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC--CCHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence 2333333343333333333 1 225689999999973 344466667777777777766554 4443
No 280
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.39 E-value=0.28 Score=59.89 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=25.0
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecch
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqP 354 (1197)
+.++|.|++|+|||..+ +.+...+... .+..+++|+.+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH
Confidence 45899999999999554 5666555432 23456666544
No 281
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.31 E-value=0.098 Score=65.73 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=30.3
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
+..+...+....+.++||||||. +..+-...+++.+-.-.+...+|+.+
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 34444455567899999999996 55555555665544433445565544
No 282
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.31 E-value=0.19 Score=61.60 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=20.4
Q ss_pred HHHHHHcCC---eEEEEecCCChHHHHHHHHH
Q 000991 306 LLKAISENQ---VVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 306 Il~~I~~~~---vvII~apTGSGKTtq~pq~I 334 (1197)
+..++.+++ .++++||+|+||||.+-.+.
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 334445543 37999999999998776543
No 283
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.18 E-value=0.25 Score=58.57 Aligned_cols=62 Identities=23% Similarity=0.156 Sum_probs=37.8
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
.|.|-..--+.+.+...+...+..+|||||+|. ++......+++.+-.-.++..+|++|...
T Consensus 120 ~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 120 VITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 343333333444444444567889999999996 56666667776665443455566665554
No 284
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.17 E-value=0.14 Score=56.96 Aligned_cols=21 Identities=14% Similarity=0.263 Sum_probs=16.8
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..++++||+|||||+.+-.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 468999999999999665433
No 285
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.12 E-value=0.32 Score=58.51 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=25.3
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivtq 353 (1197)
...+++.|++|+|||..+ +.+...+... .....++++.
T Consensus 136 ~n~l~l~G~~G~GKThL~-~ai~~~l~~~--~~~~~v~yi~ 173 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLL-HAIGNEILEN--NPNAKVVYVS 173 (405)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHHHh--CCCCcEEEEE
Confidence 346899999999999655 5666655543 2234566653
No 286
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.16 Score=63.82 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
+...+...|...++.++||||+|. +..+-...+++.+-.-.++..+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 334444456677899999999996 44444445555544433445555544
No 287
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.10 E-value=0.27 Score=55.54 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.2
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
..++++.||+|||||+.+-.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 457899999999999877544
No 288
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.09 E-value=0.58 Score=58.37 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc-cccee--
Q 000991 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK-LGESV-- 378 (1197)
Q Consensus 302 ~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~-lg~~V-- 378 (1197)
.-+++++...+ +-.+++.|==+|||..+. +++-.++..- .+.+|++++|.+-.+..+.+++...+... .+..+
T Consensus 244 ~s~~~~~~fkq-k~tVflVPRR~GKTwivv-~iI~~ll~s~--~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~ 319 (738)
T PHA03368 244 FSDAAVRHFRQ-RATVFLVPRRHGKTWFLV-PLIALALATF--RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDH 319 (738)
T ss_pred ccHHHHHHhhc-cceEEEecccCCchhhHH-HHHHHHHHhC--CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheee
Confidence 33566666644 556677799999998666 4443333221 34689999999999999999887753211 11111
Q ss_pred --eeEe--eeccccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 379 --GYKV--RLEGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 379 --Gy~i--r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
|-.+ .+.+ .....|.|.+.. +.. .=.+++++|||||+. +..+.+..++-.+... +.++|.+
T Consensus 320 vkGe~I~i~f~n--G~kstI~FaSar-------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~I 386 (738)
T PHA03368 320 VKGETISFSFPD--GSRSTIVFASSH-------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFV 386 (738)
T ss_pred ecCcEEEEEecC--CCccEEEEEecc-------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEE
Confidence 2111 1111 112366776431 111 123789999999998 6777777777444443 7899999
Q ss_pred cccCCHHHHHhhhC
Q 000991 453 SATLNAELFSSYFG 466 (1197)
Q Consensus 453 SATl~~~~f~~yf~ 466 (1197)
|-|-..+.-..|+.
T Consensus 387 SS~Ns~~~sTSFL~ 400 (738)
T PHA03368 387 SSTNTGKASTSFLY 400 (738)
T ss_pred ecCCCCccchHHHH
Confidence 99976665555543
No 289
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.07 E-value=0.13 Score=63.34 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=24.1
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~ 442 (1197)
+......|...+..+|||||+|. +.......+++.+-.
T Consensus 117 ie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~LEe 154 (507)
T PRK06645 117 IESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKTLEE 154 (507)
T ss_pred HHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHHHhh
Confidence 33444456677899999999996 344444455554433
No 290
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.07 E-value=0.16 Score=62.81 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=29.1
Q ss_pred CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 409 d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.|....+.++||||||. +..+..-.+++.+-.-.+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45667899999999997 45555556666554444456666654
No 291
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.05 E-value=0.1 Score=60.24 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~L 358 (1197)
+.+..++..+.+++|+|+|||||||.+- .++..+.. ..+..+|+++.-..++
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~-al~~~i~~--~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLAN-ALLAEIAK--NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHhhc--cCCCceEEEECCchhh
Confidence 4556667788999999999999998764 44444422 1234578887766665
No 292
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.05 E-value=0.26 Score=56.92 Aligned_cols=60 Identities=27% Similarity=0.300 Sum_probs=47.3
Q ss_pred hcCCCHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHH
Q 000991 295 RSLPSYKERDALLKAISEN--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR 356 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~--~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR 356 (1197)
.-.|-..+|...++++... .-|.+.|.-|||||..+...-++..++.+ ...+|||+-|+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~v 286 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPTV 286 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCCc
Confidence 4467888999999999764 45778999999999888888888877543 456899977763
No 293
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.05 E-value=0.082 Score=61.38 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~L 358 (1197)
+.+..++..+.+++|+|+|||||||.. -.++..+... .+..+|+++..+.++
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~--~~~~rivtiEd~~El 186 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVAS--APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcC--CCCceEEEecCCccc
Confidence 445667788899999999999999876 3455544321 233577777666554
No 294
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.04 E-value=0.091 Score=57.13 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=20.4
Q ss_pred HHHHHHHHc--CCeEEEEecCCChHHHHHH
Q 000991 304 DALLKAISE--NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 304 ~~Il~~I~~--~~vvII~apTGSGKTtq~p 331 (1197)
+.+.+.+.+ ++.++|.||-|+|||+.+-
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 344445554 5899999999999996443
No 295
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.03 E-value=0.31 Score=69.14 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=78.4
Q ss_pred cCCCHHHHHHHHHHHHc--CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 296 SLPSYKERDALLKAISE--NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~--~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
.+++..-|.+.+..+.. +++.+|.|+.|+||||.+- .+++.+-. .+..|++++|+--+|..+.+.. |..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~----~G~~V~~lAPTgrAA~~L~e~~----g~~ 497 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASE----QGYEIQIITAGSLSAQELRQKI----PRL 497 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHh----cCCeEEEEeCCHHHHHHHHHHh----cch
Confidence 35566666666666654 5899999999999997654 44443322 2346777789988776665433 221
Q ss_pred ccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 374 LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 374 lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
-.....+--+ .... ....|...++ ..+..+..-++|||||+-. ++...+..+++.... .+.|+|++-
T Consensus 498 A~Ti~~~l~~---l~~~---~~~~tv~~fl---~~~~~l~~~~vlIVDEAsM--l~~~~~~~Ll~~a~~--~garvVlvG 564 (1960)
T TIGR02760 498 ASTFITWVKN---LFND---DQDHTVQGLL---DKSSPFSNKDIFVVDEANK--LSNNELLKLIDKAEQ--HNSKLILLN 564 (1960)
T ss_pred hhhHHHHHHh---hccc---ccchhHHHhh---cccCCCCCCCEEEEECCCC--CCHHHHHHHHHHHhh--cCCEEEEEc
Confidence 1000000000 0000 0111222222 2233466789999999996 666667777665433 567888776
Q ss_pred cc
Q 000991 454 AT 455 (1197)
Q Consensus 454 AT 455 (1197)
=+
T Consensus 565 D~ 566 (1960)
T TIGR02760 565 DS 566 (1960)
T ss_pred Ch
Confidence 54
No 296
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=94.02 E-value=0.14 Score=58.37 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=58.9
Q ss_pred CCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHc
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLR 1170 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1197)
-+.||-+.||++.++.+-+.|.|.. ...+..+ |+-.|-+.+..=+|. +.+||+|-+|||.+-|+-|-
T Consensus 140 ~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~~Gk-G~sKKiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 140 QVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTEEGK-GPSKKIAKRNAAEAMLESLG 210 (339)
T ss_pred cccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceeeecC-CchHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999998 4444444 999999999999997 78999999999998888776
No 297
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.01 E-value=0.27 Score=62.91 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=57.4
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHH
Q 000991 286 EGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1197)
Q Consensus 286 ~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~r 365 (1197)
.+......-..-|+...|.+++.. ....++|.|..|||||+.+.--+... +..+....-.|+++..+|.+|..+.+|
T Consensus 184 ~~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayL-l~~~~~~~~~IL~ltft~~AA~em~eR 260 (684)
T PRK11054 184 EYADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWL-LARGQAQPEQILLLAFGRQAAEEMDER 260 (684)
T ss_pred HHHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHH-HHhCCCCHHHeEEEeccHHHHHHHHHH
Confidence 344555544557888888777653 34567889999999998776544332 222333345788888999999999999
Q ss_pred HHHHhC
Q 000991 366 VAAERG 371 (1197)
Q Consensus 366 Va~e~g 371 (1197)
+....|
T Consensus 261 L~~~lg 266 (684)
T PRK11054 261 IRERLG 266 (684)
T ss_pred HHHhcC
Confidence 976654
No 298
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.01 E-value=0.1 Score=54.59 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
...+...+.-..+.++||||+|. +..+..-.+||.+-.-.++..+|++|-.+
T Consensus 91 ~~~~~~~~~~~~~KviiI~~ad~--l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 91 IEFLSLSPSEGKYKVIIIDEADK--LTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHCTSS-TTSSSEEEEEETGGG--S-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHhcCCceEEEeehHhh--hhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 33333344556899999999996 67777777777766655567777776654
No 299
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.14 Score=64.02 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=21.4
Q ss_pred HHHHHHHcC---CeEEEEecCCChHHHHHHHHH
Q 000991 305 ALLKAISEN---QVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 305 ~Il~~I~~~---~vvII~apTGSGKTtq~pq~I 334 (1197)
.+..++.++ +.++++||.|+||||.+-.+.
T Consensus 27 ~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 27 ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 344445554 358899999999998886554
No 300
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.21 Score=59.15 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=22.8
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHHHHccC
Q 000991 315 VVVVSGETGCGKTTQLPQYILESETEAARG 344 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~~~~~~g 344 (1197)
+++|.|+||+||| +...++++.+.....+
T Consensus 44 n~~iyG~~GTGKT-~~~~~v~~~l~~~~~~ 72 (366)
T COG1474 44 NIIIYGPTGTGKT-ATVKFVMEELEESSAN 72 (366)
T ss_pred cEEEECCCCCCHh-HHHHHHHHHHHhhhcc
Confidence 5899999999999 6667888887665433
No 301
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.86 E-value=0.23 Score=50.51 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=18.6
Q ss_pred eEEEEecCCChHHHHHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
+++|.|++|+|||+.+.+++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999998887766554
No 302
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.79 E-value=1.1 Score=50.42 Aligned_cols=119 Identities=22% Similarity=0.315 Sum_probs=64.5
Q ss_pred HHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeee
Q 000991 305 ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRL 384 (1197)
Q Consensus 305 ~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~ 384 (1197)
.+.+.+.++.++++.|++|+|||..+..... .+.. .| ..++++ +...++.++..-. .. |
T Consensus 97 ~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~-~l~~--~g--~sv~f~-~~~el~~~Lk~~~----~~------~----- 155 (254)
T COG1484 97 SLVEFFERGENLVLLGPPGVGKTHLAIAIGN-ELLK--AG--ISVLFI-TAPDLLSKLKAAF----DE------G----- 155 (254)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHHHHHH-HHHH--cC--CeEEEE-EHHHHHHHHHHHH----hc------C-----
Confidence 3344455788999999999999966654443 3332 22 233332 5555555554433 11 0
Q ss_pred ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCC---hhHHHHHHHHHcccCccceEEEecccCCHHHH
Q 000991 385 EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMN---EDFLLIVLKELLPRRPELRLILMSATLNAELF 461 (1197)
Q Consensus 385 e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~---~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f 461 (1197)
...+.|.+ .+.+++++||||+=-.... .+.+..++......+. . +++.-.+.+.+
T Consensus 156 ------------~~~~~l~~------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~---~-~~tsN~~~~~~ 213 (254)
T COG1484 156 ------------RLEEKLLR------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRS---L-IITSNLSFGEW 213 (254)
T ss_pred ------------chHHHHHH------HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhcc---c-eeecCCChHHH
Confidence 01123343 2568899999999842222 2444444433333222 3 55555566666
Q ss_pred HhhhC
Q 000991 462 SSYFG 466 (1197)
Q Consensus 462 ~~yf~ 466 (1197)
.+.|+
T Consensus 214 ~~~~~ 218 (254)
T COG1484 214 DELFG 218 (254)
T ss_pred Hhhcc
Confidence 65554
No 303
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.76 E-value=0.74 Score=53.33 Aligned_cols=113 Identities=14% Similarity=0.256 Sum_probs=58.1
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
.++.+++.|++|+|||..+. .|...+.. +|..+ +++..|. ++..+...+ +. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~-Aia~~l~~--~g~~v-~~~~~~~--l~~~lk~~~----~~------------------~ 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLA-AIANELAK--KGVSS-TLLHFPE--FIRELKNSI----SD------------------G 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHH--cCCCE-EEEEHHH--HHHHHHHHH----hc------------------C
Confidence 45789999999999996655 34444432 33333 3443452 333322211 10 0
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHH-HHHHHHcccC-ccceEEEecccCCHHHHHhhh
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLL-IVLKELLPRR-PELRLILMSATLNAELFSSYF 465 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll-~lLr~ll~~r-~~lklIlmSATl~~~~f~~yf 465 (1197)
+...+++ .+.+++++||||+.--.+ +++.. .++..++..| .+-+-.++|.-++.+.+.++|
T Consensus 207 ------~~~~~l~------~l~~~dlLiIDDiG~e~~-s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ------SVKEKID------AVKEAPVLMLDDIGAEQM-SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ------cHHHHHH------HhcCCCEEEEecCCCccc-cHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 1122233 256889999999984322 22222 2333333222 122345556666777676666
No 304
>PRK12377 putative replication protein; Provisional
Probab=93.75 E-value=0.67 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=19.2
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
...+++.|++|+|||..+. .|...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999996554 4444444
No 305
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.69 E-value=0.21 Score=55.38 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=29.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecc
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivtq 353 (1197)
+..+..++|.|++||||||.+.+++...+ .++..+..+.+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL---QNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEeCC
Confidence 45688999999999999998888887643 234444444443
No 306
>PHA02533 17 large terminase protein; Provisional
Probab=93.68 E-value=0.44 Score=59.24 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=91.9
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
.+++...|..++..+..++-.++.-+=..|||+.+..+++..+... +...+++++|++..|..+.+++...... ..
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~ie~-~P 132 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAIEL-LP 132 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHHHh-CH
Confidence 4778899999999887777778889999999998887666555432 2348889999999999988877643321 11
Q ss_pred c--eeee------EeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccc
Q 000991 376 E--SVGY------KVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPEL 447 (1197)
Q Consensus 376 ~--~VGy------~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~l 447 (1197)
. ..+. .+.+ ..+..|.+.|.+- +-. .=.+.+++|+||+|...-..+++..+ ...+......
T Consensus 133 ~l~~~~i~~~~~~~I~l----~NGS~I~~lss~~--~t~----rG~~~~~liiDE~a~~~~~~e~~~ai-~p~lasg~~~ 201 (534)
T PHA02533 133 DFLQPGIVEWNKGSIEL----ENGSKIGAYASSP--DAV----RGNSFAMIYIDECAFIPNFIDFWLAI-QPVISSGRSS 201 (534)
T ss_pred HHhhcceeecCccEEEe----CCCCEEEEEeCCC--Ccc----CCCCCceEEEeccccCCCHHHHHHHH-HHHHHcCCCc
Confidence 0 0110 1111 2345555555431 100 11245679999999632222444333 3333333345
Q ss_pred eEEEecccCCHHHHHhhh
Q 000991 448 RLILMSATLNAELFSSYF 465 (1197)
Q Consensus 448 klIlmSATl~~~~f~~yf 465 (1197)
+++..|..-....|.+.+
T Consensus 202 r~iiiSTp~G~n~fye~~ 219 (534)
T PHA02533 202 KIIITSTPNGLNHFYDIW 219 (534)
T ss_pred eEEEEECCCchhhHHHHH
Confidence 666666664333355544
No 307
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.62 E-value=0.17 Score=63.38 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~ 442 (1197)
...+...|....+.++||||+|. +..+....+++.+-.
T Consensus 108 ~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEe 145 (559)
T PRK05563 108 RDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEE 145 (559)
T ss_pred HHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcC
Confidence 34444455677899999999996 455556666665543
No 308
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.61 E-value=0.15 Score=63.65 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=27.1
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 404 r~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
..+...|...+..++||||||. +..+..-.+++.+-.-.+...+|+++
T Consensus 109 ~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 109 DNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 3344455666789999999996 34444444444443332344455544
No 309
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.58 E-value=0.19 Score=57.41 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=65.9
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHc-cCCceEEEec-chHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAA-RGAACSIICT-QPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~-~g~~~~Iivt-qPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
.+++|+|+||.|||+.+-.|.-.+-.... ....+-|+++ .|...-...++..+-..+|......-
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~------------- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD------------- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC-------------
Confidence 58999999999999877766654322111 1112334444 47666666777777777665532210
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCC--CC--CChhHHHHHHHHHcccCccceEEEecccC
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE--RG--MNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe--R~--~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
.+--.+ ...++.|. --++.++||||+|. .| ....-.+..||.+... -.+.+|+. .|.
T Consensus 129 -~~~~~~-~~~~~llr----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~ 189 (302)
T PF05621_consen 129 -RVAKLE-QQVLRLLR----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTR 189 (302)
T ss_pred -CHHHHH-HHHHHHHH----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccH
Confidence 000000 11122222 23678999999995 22 2223556667776332 23445544 454
No 310
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.55 E-value=0.16 Score=64.14 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=27.7
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 404 r~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
..+...+...+..+|||||+|. +..+.+..+++.+-...+...+|+.
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3344455677899999999996 4445455555554333333334443
No 311
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.53 E-value=0.063 Score=53.00 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=13.6
Q ss_pred EEEEecCCChHHHHHH
Q 000991 316 VVVSGETGCGKTTQLP 331 (1197)
Q Consensus 316 vII~apTGSGKTtq~p 331 (1197)
+++.||+|||||+.+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999996554
No 312
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.50 E-value=0.7 Score=53.27 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.6
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.+++.||+|+|||+.+-.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999766443
No 313
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.49 E-value=0.39 Score=58.38 Aligned_cols=136 Identities=23% Similarity=0.233 Sum_probs=71.2
Q ss_pred EecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHH---HHHHH--HhCCc--c-cceee-eEeeeccccC
Q 000991 319 SGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVS---ERVAA--ERGEK--L-GESVG-YKVRLEGMKG 389 (1197)
Q Consensus 319 ~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva---~rVa~--e~g~~--l-g~~VG-y~ir~e~~~~ 389 (1197)
...||||||.+..-.||+... +|-+.-+.++--+-++-...- ..+.. .+.+. . +..+- -.|..-+..+
T Consensus 3 ~matgsgkt~~ma~lil~~y~---kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYK---KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred ccccCCChhhHHHHHHHHHHH---hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 468999999888878887553 232323333323333311110 00000 01111 1 11111 1111112234
Q ss_pred CCceEEEEcchHHHHHHhcCC-------CCCCccEE-EEecCCCCCCCh-----h------HHHHHHHHHcccCccceEE
Q 000991 390 RDTRLMFCTTGILLRRLLVDR-------SLRGVTHV-IVDEIHERGMNE-----D------FLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~-------~L~~is~V-IIDEaHeR~~~~-----D------~Ll~lLr~ll~~r~~lklI 450 (1197)
....|.|+|.+-|...+.+.. .+.+..+| +-||+|+....+ | -+...+...+..+++--++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 567899999998877665433 35555555 569999632211 1 2333445555677888889
Q ss_pred EecccCC
Q 000991 451 LMSATLN 457 (1197)
Q Consensus 451 lmSATl~ 457 (1197)
..|||++
T Consensus 160 ef~at~~ 166 (812)
T COG3421 160 EFSATIP 166 (812)
T ss_pred hhhhcCC
Confidence 9999985
No 314
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.49 E-value=0.21 Score=60.32 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=21.5
Q ss_pred HHHHHHHH-cCCeEEEEecCCChHHHHHHHHH
Q 000991 304 DALLKAIS-ENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 304 ~~Il~~I~-~~~vvII~apTGSGKTtq~pq~I 334 (1197)
+.+...+. .+..++++|||||||||..-.++
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L 279 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYAAL 279 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 34444443 36688999999999997665444
No 315
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.48 E-value=0.093 Score=67.79 Aligned_cols=115 Identities=20% Similarity=0.116 Sum_probs=65.7
Q ss_pred HHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEee-
Q 000991 305 ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVR- 383 (1197)
Q Consensus 305 ~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir- 383 (1197)
+++-.+.=++--|....||=|||+++.++++-.++. |.++. |||+- --||.-=++.....+ .-+|.+||.-..
T Consensus 143 QLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~---G~gVH-vVTvN-DYLA~RDaewm~p~y-~flGLtVg~i~~~ 216 (1025)
T PRK12900 143 QLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALT---GRGVH-VVTVN-DYLAQRDKEWMNPVF-EFHGLSVGVILNT 216 (1025)
T ss_pred HHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHc---CCCcE-EEeec-hHhhhhhHHHHHHHH-HHhCCeeeeeCCC
Confidence 455555555556789999999999998888766553 33344 44432 223322222221111 224555553221
Q ss_pred ---eccccCCCceEEEEcchHH-----HHHHhcCC---CCCCccEEEEecCCC
Q 000991 384 ---LEGMKGRDTRLMFCTTGIL-----LRRLLVDR---SLRGVTHVIVDEIHE 425 (1197)
Q Consensus 384 ---~e~~~~~~t~Ilv~Tpg~L-----Lr~L~~d~---~L~~is~VIIDEaHe 425 (1197)
.+....-.++|+|+|..-+ .+-+...+ ....+.+.|||||+.
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 1222345789999998543 33332222 457789999999994
No 316
>PRK06921 hypothetical protein; Provisional
Probab=93.41 E-value=0.74 Score=52.23 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=20.1
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
.+..+++.|+||+|||..+. .|...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHh
Confidence 46789999999999996554 4444444
No 317
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.33 E-value=0.37 Score=52.81 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.0
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
..+++.||+|+||||.+-
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 478999999999997663
No 318
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.24 E-value=0.48 Score=54.86 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=14.5
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++++||+|+|||+.+-.+
T Consensus 45 ~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred EEEeeCcCCCCHHHHHHHH
Confidence 5556999999999766443
No 319
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.14 E-value=0.52 Score=55.30 Aligned_cols=36 Identities=33% Similarity=0.373 Sum_probs=24.6
Q ss_pred CccEEEEecCCCCC-CChhHHHHHHHHHcccCccceEEEecccC
Q 000991 414 GVTHVIVDEIHERG-MNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 414 ~is~VIIDEaHeR~-~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
+=.+++|||+|... ...|+++-.+ .+-.+++.-||-
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~v-------E~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHV-------ENGTIILIGATT 140 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhh-------cCCeEEEEeccC
Confidence 34689999999532 3446666654 345688999985
No 320
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.12 E-value=0.25 Score=62.46 Aligned_cols=41 Identities=17% Similarity=0.056 Sum_probs=28.7
Q ss_pred CcEEEeCc-EEEEEechhHHHHHHHHHHHHHHHHHHHHcCCC
Q 000991 1005 GHLKMLGG-YLEFFMKPELADTYLSLKREIEELTQQKLLNPE 1045 (1197)
Q Consensus 1005 ~~~~~~d~-~~~~~~~~~~~~~~~~lr~~l~~~l~~k~~~p~ 1045 (1197)
|++..+|+ -..+.+.+....+++.=...|+..+++.+.++-
T Consensus 465 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (620)
T PRK14948 465 AELVSLDSNRAVIAVSPNWLGMVQSRKPLLEQAFAKVLGRSI 506 (620)
T ss_pred hheecccCCEEEEEeCHHHHHHHHHhHHHHHHHHHHHhCCCe
Confidence 44443333 344555788888888888888999998887774
No 321
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.09 E-value=0.2 Score=63.90 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
..|+++++.++....-.+|.|-+|+||||.+...|-- +.. .+.+|+.|.=|-.++..+-.++..
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIki-L~~----~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKI-LVA----LGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHH-HHH----cCCeEEEEehhhHHHHHHHHHHhc
Confidence 3578899999999999999999999999887765533 222 234788888888888777666643
No 322
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.05 E-value=0.14 Score=59.70 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
...+...+...+..++||||+|. ++.+..-.+||.+-.-.++..+|+.|.
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~--m~~~aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEA--MNRNAANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred HHHHhhccccCCCeEEEECChhh--CCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 34444455667899999999996 666666777776544333444554443
No 323
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.05 E-value=0.2 Score=63.70 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
|...+...|....+.++||||||. +..+....+++.+-.-.+...+|+++
T Consensus 106 Lie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 106 LIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 444445556678899999999996 44455555555544332334444433
No 324
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.05 E-value=0.26 Score=54.22 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=55.5
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCce
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~ 393 (1197)
+.++|.||+|+|||. ..+.+...+... .+..+|+|+.. ......+...+.. .
T Consensus 35 ~~l~l~G~~G~GKTH-LL~Ai~~~~~~~--~~~~~v~y~~~-~~f~~~~~~~~~~---------------------~--- 86 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTH-LLQAIANEAQKQ--HPGKRVVYLSA-EEFIREFADALRD---------------------G--- 86 (219)
T ss_dssp SEEEEEESTTSSHHH-HHHHHHHHHHHH--CTTS-EEEEEH-HHHHHHHHHHHHT---------------------T---
T ss_pred CceEEECCCCCCHHH-HHHHHHHHHHhc--cccccceeecH-HHHHHHHHHHHHc---------------------c---
Confidence 458999999999996 556666655543 23456777532 2333332222211 0
Q ss_pred EEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCCh---hHHHHHHHHHcccCccceEEEecccC
Q 000991 394 LMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNE---DFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 394 Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~---D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
....+.. .+.+++++|||++|.-.-.. +.+..++..+... +-++|+.|...
T Consensus 87 ----~~~~~~~------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~ 140 (219)
T PF00308_consen 87 ----EIEEFKD------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRP 140 (219)
T ss_dssp ----SHHHHHH------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-
T ss_pred ----cchhhhh------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCC
Confidence 0112223 24578999999999643322 3455555554433 33566666554
No 325
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.04 E-value=0.4 Score=57.63 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=20.9
Q ss_pred HHHHHHcCC---eEEEEecCCChHHHHHHHHH
Q 000991 306 LLKAISENQ---VVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 306 Il~~I~~~~---vvII~apTGSGKTtq~pq~I 334 (1197)
+..++.+++ .++++||.|+||||.+-.+.
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHHH
Confidence 444455553 48899999999998886553
No 326
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.99 E-value=0.75 Score=54.04 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
+...+...+...+..+|||||+|. +..+....+++.+-...++..+|+.
T Consensus 105 l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHHhCCccceeEEEE
Confidence 445555566777889999999996 4444455555555332333444443
No 327
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=92.96 E-value=0.28 Score=63.13 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=68.9
Q ss_pred HHHHHHHHHH----HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh-CCccc
Q 000991 301 KERDALLKAI----SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER-GEKLG 375 (1197)
Q Consensus 301 ~~q~~Il~~I----~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~-g~~lg 375 (1197)
.||..-++++ ++|-+-|+.-+-|-|||.|..-++...+-+.+..+.-.||| ||-.+.+ +-..+.... |.++-
T Consensus 618 eYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVV--pTsviLn-WEMElKRwcPglKIL 694 (1958)
T KOG0391|consen 618 EYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVV--PTSVILN-WEMELKRWCPGLKIL 694 (1958)
T ss_pred HHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEe--echhhhh-hhHHHhhhCCcceEe
Confidence 3444444444 56888999999999999888766665554444444455666 8765432 111121111 22222
Q ss_pred ceeeeE-----eeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCC
Q 000991 376 ESVGYK-----VRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE 425 (1197)
Q Consensus 376 ~~VGy~-----ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe 425 (1197)
...|-. -|-++......+|.|+....+++-+..- .-.++.++|+||+|.
T Consensus 695 TYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF-krkrWqyLvLDEaqn 748 (1958)
T KOG0391|consen 695 TYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF-KRKRWQYLVLDEAQN 748 (1958)
T ss_pred eecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH-Hhhccceeehhhhhh
Confidence 223311 1223333345678887777666544311 234678999999994
No 328
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.96 E-value=0.56 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.3
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..+++.||+|||||+.+-.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 457999999999999877543
No 329
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.94 E-value=0.63 Score=57.32 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=28.5
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEE
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIl 451 (1197)
+.+.+...|......++||||+|. +..+....+++.+-...++..+|+
T Consensus 107 I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 107 LRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 344444556677899999999996 444444455555444333443444
No 330
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.93 E-value=0.2 Score=56.55 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=30.6
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecc
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivtq 353 (1197)
+..+..++|+|++|||||+.+.|++.+.+. ++..+..+-+.
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEec
Confidence 346889999999999999999999887552 34455555444
No 331
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=92.91 E-value=0.036 Score=62.83 Aligned_cols=37 Identities=38% Similarity=0.557 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETE 340 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~ 340 (1197)
..++...+.|.-.|+.|||||||||...-|.|+.+.+
T Consensus 264 Nk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q 300 (514)
T KOG2373|consen 264 NKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ 300 (514)
T ss_pred HHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhh
Confidence 4566666778899999999999999999999887654
No 332
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.90 E-value=0.51 Score=62.03 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=60.1
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCceE
Q 000991 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRL 394 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~I 394 (1197)
+++++||||+|||..+- .+.+.+.. ....++++- ..-.+-...+....|...| .+||.
T Consensus 598 ~~lf~Gp~GvGKT~lA~-~La~~l~~----~~~~~~~~d---mse~~~~~~~~~l~g~~~g-yvg~~------------- 655 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL-ALAELLYG----GEQNLITIN---MSEFQEAHTVSRLKGSPPG-YVGYG------------- 655 (852)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHhC----CCcceEEEe---HHHhhhhhhhccccCCCCC-ccccc-------------
Confidence 58999999999996554 33333321 111233321 0101111222222332222 23332
Q ss_pred EEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC----c------cceEEEecccCCHHHHHhh
Q 000991 395 MFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR----P------ELRLILMSATLNAELFSSY 464 (1197)
Q Consensus 395 lv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r----~------~lklIlmSATl~~~~f~~y 464 (1197)
..|.|...+.. ..+++|++||++. .+.++...++..+-..+ . .-.+|+|+..+..+.+.+.
T Consensus 656 ---~~g~L~~~v~~----~p~svvllDEiek--a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~ 726 (852)
T TIGR03345 656 ---EGGVLTEAVRR----KPYSVVLLDEVEK--AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMAL 726 (852)
T ss_pred ---ccchHHHHHHh----CCCcEEEEechhh--cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHh
Confidence 23556666654 3468999999985 44444333332221111 0 1247888888877666554
Q ss_pred h
Q 000991 465 F 465 (1197)
Q Consensus 465 f 465 (1197)
+
T Consensus 727 ~ 727 (852)
T TIGR03345 727 C 727 (852)
T ss_pred c
Confidence 4
No 333
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=92.89 E-value=0.61 Score=55.82 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEe--cchHHHHHH
Q 000991 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIIC--TQPRRISAM 360 (1197)
Q Consensus 301 ~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iiv--tqPrR~LA~ 360 (1197)
.+-.++-.++..+...++..|+|+|||....-.++...+.........|.| |.|-.+-|.
T Consensus 23 ~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l 84 (755)
T KOG1131|consen 23 EYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKAL 84 (755)
T ss_pred HHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHH
Confidence 445667777888999999999999999776666655444333233455666 345444443
No 334
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=92.83 E-value=0.21 Score=60.59 Aligned_cols=64 Identities=27% Similarity=0.293 Sum_probs=54.3
Q ss_pred CCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCCC
Q 000991 1104 GDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGDR 1173 (1197)
Q Consensus 1104 ~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1173 (1197)
+.||-++|-++.. .|.|.- ..+++++ |..+|+++|..|-|- +++||+|--+||++|++.|-+..
T Consensus 89 ~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 7799999999988 566654 3334444 999999999999999 99999999999999999998743
No 335
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.74 E-value=1.2 Score=54.43 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=24.9
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecch
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqP 354 (1197)
+.+++.||+|+|||..+ +.+...+... .+..+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~--~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN--EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH
Confidence 45899999999999544 4555555432 23456777643
No 336
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.70 E-value=0.12 Score=56.80 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=15.6
Q ss_pred EEEEecCCChHHHHHHHHHH
Q 000991 316 VVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 316 vII~apTGSGKTtq~pq~IL 335 (1197)
++|.|+.|||||+.+...+-
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~ 20 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLK 20 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHH
Confidence 47899999999986655443
No 337
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.68 E-value=0.58 Score=56.11 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=74.8
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHH-HHHHHHHHHHHHhCCcccceeeeEeeec--c--cc
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI-SAMAVSERVAAERGEKLGESVGYKVRLE--G--MK 388 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~-LA~qva~rVa~e~g~~lg~~VGy~ir~e--~--~~ 388 (1197)
+..++.|..|||||..+.+.++..++.. ....+++|+-|+.- +..++...+...... .|...-+..... . ..
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~ 78 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKIL 78 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEec
Confidence 4578999999999998888888777653 13478888888776 555666666543321 121111111100 0 01
Q ss_pred CCCceEEEEcc-hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCC
Q 000991 389 GRDTRLMFCTT-GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1197)
Q Consensus 389 ~~~t~Ilv~Tp-g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~ 457 (1197)
+.+..|+|..- .--- .+. ....+..+++||+.+. ..+.+..++..+ +.......|++|.|++
T Consensus 79 ~~g~~i~f~g~~d~~~-~ik---~~~~~~~~~idEa~~~--~~~~~~~l~~rl-r~~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPN-KLK---SGAGIAIIWFEEASQL--TFEDIKELIPRL-RETGGKKFIIFSSNPE 141 (396)
T ss_pred CCCeEEEeecccCChh-Hhh---Ccceeeeehhhhhhhc--CHHHHHHHHHHh-hccCCccEEEEEcCcC
Confidence 11345555443 1111 111 2344789999999984 445555555443 2111212478888874
No 338
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.64 E-value=0.4 Score=54.37 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=30.5
Q ss_pred CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 411 SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 411 ~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
....+.+||+||||- +..|....+.|.+-......++|+..--+
T Consensus 126 ~~~~fKiiIlDEcds--mtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDS--MTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhh--hhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 566789999999996 56666666655554444566777766543
No 339
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.50 E-value=0.89 Score=54.48 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
.+.+...+...+..++||||+|. ++......+++.+ ...|+-.++++.||
T Consensus 106 ~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 106 VTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 34444455567889999999996 4444445555554 33333344555554
No 340
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=92.50 E-value=0.41 Score=60.43 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=33.8
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qv 362 (1197)
+.-++=|..+||+|||.++...+.+.--. - +..+.|+++|+.+.-..+
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~--Y-G~~KFIivVPs~AIkeGv 120 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKK--Y-GLFKFIIVVPSLAIKEGV 120 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHH--h-CceeEEEEeccHHHHhhh
Confidence 44567789999999999999888875422 2 334556666998775553
No 341
>CHL00181 cbbX CbbX; Provisional
Probab=92.49 E-value=1.8 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=18.4
Q ss_pred cCCeEEEEecCCChHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~I 334 (1197)
.+.++++.||+|+|||+.+-...
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998776543
No 342
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.44 E-value=0.39 Score=53.17 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=24.9
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..+..++|.|++|||||+.+.+++.+.+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~ 50 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGAL 50 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 34588999999999999999999887755
No 343
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.43 E-value=0.31 Score=56.32 Aligned_cols=44 Identities=30% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 409 DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 409 d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
.+...+..+||||||+. +..|..-.+++.+-...++..+|+.+-
T Consensus 104 ~~~~~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 104 SPLEGGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCCCCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 33457899999999996 555666666666555545555555543
No 344
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.37 E-value=0.31 Score=61.54 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=27.8
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 404 r~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
..+...|...+..+|||||+|.. ...-...+++.+-.-.+...+|+++
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~L--t~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHML--STAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhhc--CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 33444567788999999999973 3333444444433322344455544
No 345
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=92.30 E-value=0.2 Score=64.99 Aligned_cols=113 Identities=20% Similarity=0.135 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHH---HHHHHhCCcccceeee
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSE---RVAAERGEKLGESVGY 380 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~---rVa~e~g~~lg~~VGy 380 (1197)
-+++-.+.=++--|....||=|||+++.+++.-.++. |.++ -|||+- --||.-=++ .+-..+ |.+||.
T Consensus 173 VQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~---GkgV-HvVTVN-DYLA~RDaewmgply~fL----GLsvg~ 243 (1112)
T PRK12901 173 VQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT---GNGV-HVVTVN-DYLAKRDSEWMGPLYEFH----GLSVDC 243 (1112)
T ss_pred hHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc---CCCc-EEEEec-hhhhhccHHHHHHHHHHh----CCceee
Confidence 3456666556666889999999999998888766653 3334 444432 233322222 233333 445553
Q ss_pred Eee-----eccccCCCceEEEEcchHH-HHHH----hcCC---CCCCccEEEEecCCC
Q 000991 381 KVR-----LEGMKGRDTRLMFCTTGIL-LRRL----LVDR---SLRGVTHVIVDEIHE 425 (1197)
Q Consensus 381 ~ir-----~e~~~~~~t~Ilv~Tpg~L-Lr~L----~~d~---~L~~is~VIIDEaHe 425 (1197)
-.. .+....-.++|+|+|..-+ .+.| ..++ ....+.+.|||||+.
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 221 1223335789999998544 2222 2222 456789999999994
No 346
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.27 E-value=0.54 Score=56.80 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.4
Q ss_pred CeEEEEecCCChHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ 333 (1197)
..+++.||+|+||||.+-.+
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 37899999999999877543
No 347
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.23 E-value=0.23 Score=60.45 Aligned_cols=70 Identities=30% Similarity=0.418 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC--CceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG--AACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g--~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
.+.|++|+.. ..|..+||.|..||||||++.+=+.-.+.. -++ ...-|+++.|.|....-++. |--++|+
T Consensus 214 QkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~-~R~~l~~k~vlvl~PN~vFleYis~-VLPeLGe 285 (747)
T COG3973 214 QKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYG-YRGPLQAKPVLVLGPNRVFLEYISR-VLPELGE 285 (747)
T ss_pred hHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhc-cccccccCceEEEcCcHHHHHHHHH-hchhhcc
Confidence 3456777664 578999999999999999988755443332 121 11237777899998766554 4344443
No 348
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.19 E-value=0.7 Score=56.95 Aligned_cols=114 Identities=22% Similarity=0.198 Sum_probs=90.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceE-EEEeecccccccccCCEE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRK-IVLATNMAETSITINDVV 654 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~k-VLVATniaEtGIdIPdV~ 654 (1197)
.+.++|+|..--+.+.-+.++|... ++.-+-|.|+....+|+.+...|....+- .+++|-....|||+-..+
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr-------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR-------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh-------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 4568999988778888888888765 56678899999999999999999876654 468999999999999999
Q ss_pred EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchh
Q 000991 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1197)
Q Consensus 655 ~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~ 711 (1197)
.||- ||...+...-. ++.-|+-|-|-++.-.+|+|+++...+
T Consensus 1116 TViF--------YdSDWNPT~D~-------QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1116 TVIF--------YDSDWNPTADQ-------QAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred eEEE--------ecCCCCcchhh-------HHHHHHHhccCccceeeeeecccccHH
Confidence 9997 77766654332 455666666666778899999987654
No 349
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.18 E-value=0.25 Score=63.34 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
...|.+++.. .+..++|.|..|||||+.+..-+...+.. ..-...+|+++..|+-+|.++.+|+...++
T Consensus 4 n~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~-~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 4 NPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG-CGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh-cCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 3455665554 34567788999999998877666554422 222345799999999999999999987665
No 350
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.15 E-value=0.25 Score=57.44 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHH
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~L 358 (1197)
.+.+..++..+.+++|+|+|||||||.+ ..++..... ..+..+|+++..+.++
T Consensus 138 ~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~--~~~~~rivtIEd~~El 190 (319)
T PRK13894 138 REAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVI--QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhh--cCCCceEEEEcCCCcc
Confidence 3445556788999999999999999765 445444321 1234567776655544
No 351
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.11 E-value=0.14 Score=58.05 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=30.5
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHH
Q 000991 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR 356 (1197)
Q Consensus 306 Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR 356 (1197)
+...++.+.+++|+|+|||||||..-. +++.+.. ...+|++++...
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~a-ll~~i~~----~~~~iv~iEd~~ 165 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNA-LLEEIPP----EDERIVTIEDPP 165 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHH-HHHHCHT----TTSEEEEEESSS
T ss_pred HhhccccceEEEEECCCccccchHHHH-Hhhhccc----cccceEEecccc
Confidence 333456789999999999999988744 4444321 125677765433
No 352
>PRK06620 hypothetical protein; Validated
Probab=92.07 E-value=0.33 Score=53.21 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.1
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
+.+++.||+|||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999996543
No 353
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.04 E-value=0.56 Score=59.37 Aligned_cols=50 Identities=18% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
+..+...|...++.+|||||+|. +..+..-.+++.+ ...|+--++++.+|
T Consensus 110 i~~~~~~P~~~~~KVvIIdea~~--Ls~~a~naLLK~L-Eepp~~tifIL~tt 159 (614)
T PRK14971 110 IEQVRIPPQIGKYKIYIIDEVHM--LSQAAFNAFLKTL-EEPPSYAIFILATT 159 (614)
T ss_pred HHHHhhCcccCCcEEEEEECccc--CCHHHHHHHHHHH-hCCCCCeEEEEEeC
Confidence 33445566788999999999996 3444444444444 33333333444444
No 354
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.04 E-value=2 Score=59.24 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHH--cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 298 PSYKERDALLKAIS--ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~--~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
.+...|.+.+..+. .+++++|.|..|+||||.+-. +++.+..........|+.+.||--+|..+.+ .|...
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~-i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~A- 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVDA- 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHH-HHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCchH-
Confidence 45566666666665 458999999999999987532 2222211112233467777899877766532 22210
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHH-----HhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEE
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRR-----LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~-----L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
.|-..+|.. ...+......++|||||+=. +....+..+++.+- ..+.|+|
T Consensus 908 ---------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASM--V~~~~m~~ll~~~~--~~garvV 962 (1623)
T PRK14712 908 ---------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSM--VGNTDMARAYALIA--AGGGRAV 962 (1623)
T ss_pred ---------------------hhHHHHhccccchhhcccCCCCCCcEEEEEcccc--ccHHHHHHHHHhhh--hCCCEEE
Confidence 011111110 01111233458999999985 55544444444332 2457888
Q ss_pred Eeccc
Q 000991 451 LMSAT 455 (1197)
Q Consensus 451 lmSAT 455 (1197)
++-=+
T Consensus 963 LVGD~ 967 (1623)
T PRK14712 963 ASGDT 967 (1623)
T ss_pred EEcch
Confidence 87655
No 355
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.03 E-value=0.39 Score=60.15 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=22.6
Q ss_pred HhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 406 LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 406 L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
+...|...++.++||||+|. +.......+++.+-
T Consensus 111 ~~~~p~~~~~KVvIIDEa~~--Ls~~a~naLLK~LE 144 (563)
T PRK06647 111 IMFPPASSRYRVYIIDEVHM--LSNSAFNALLKTIE 144 (563)
T ss_pred HHhchhcCCCEEEEEEChhh--cCHHHHHHHHHhhc
Confidence 34455678899999999996 44444445555543
No 356
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.92 E-value=0.41 Score=58.33 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=22.8
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecc
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivtq 353 (1197)
+.+++.||+|+|||+.+ +.+...+... ...++++.
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~----~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES----GGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc----CCCEEEee
Confidence 46899999999999544 4555544432 24566653
No 357
>PRK09087 hypothetical protein; Validated
Probab=91.87 E-value=1 Score=49.80 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=15.9
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
++.++|+||+|||||+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5669999999999996554
No 358
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.79 E-value=0.2 Score=58.88 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=32.0
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHH
Q 000991 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1197)
Q Consensus 306 Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~L 358 (1197)
+-.++..+.+++|+|+|||||||..- .++..+ ....+|+.+..+.++
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~-aLl~~i-----~~~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSK-TLISAI-----PPQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHH-HHHccc-----CCCCCEEEECCCccc
Confidence 34456789999999999999997663 344332 223467776666654
No 359
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.75 E-value=0.89 Score=59.04 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHH-----cCCeEEEEecCCChHHHHHHH
Q 000991 298 PSYKERDALLKAIS-----ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~-----~~~vvII~apTGSGKTtq~pq 332 (1197)
|+..+..++-..+. ...++|+.||+|+|||+.+-.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 55554444444433 356899999999999976543
No 360
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.72 E-value=1.3 Score=58.37 Aligned_cols=121 Identities=22% Similarity=0.331 Sum_probs=59.6
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCceE
Q 000991 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRL 394 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~I 394 (1197)
.++++||||+|||+.+ ..|.+.+.. .+ ...|.+ ....... ...+...+|...| .+||..
T Consensus 600 ~~Lf~Gp~G~GKT~lA-~aLa~~l~~--~~-~~~i~i--d~se~~~--~~~~~~LiG~~pg-y~g~~~------------ 658 (857)
T PRK10865 600 SFLFLGPTGVGKTELC-KALANFMFD--SD-DAMVRI--DMSEFME--KHSVSRLVGAPPG-YVGYEE------------ 658 (857)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhhc--CC-CcEEEE--EhHHhhh--hhhHHHHhCCCCc-ccccch------------
Confidence 6899999999999866 345444431 11 122222 1111111 1123333443322 344321
Q ss_pred EEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc--------Cccce--EEEecccCCHHHHHhh
Q 000991 395 MFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR--------RPELR--LILMSATLNAELFSSY 464 (1197)
Q Consensus 395 lv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~--------r~~lk--lIlmSATl~~~~f~~y 464 (1197)
-|.|...+.. ..+++|+|||++. .+.+....++..+-.. .-+.+ +|+||..+..+.+.+.
T Consensus 659 ----~g~l~~~v~~----~p~~vLllDEiek--a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~ 728 (857)
T PRK10865 659 ----GGYLTEAVRR----RPYSVILLDEVEK--AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQER 728 (857)
T ss_pred ----hHHHHHHHHh----CCCCeEEEeehhh--CCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHh
Confidence 1233333332 2357999999996 4555444444433111 01223 5677777765655554
Q ss_pred hC
Q 000991 465 FG 466 (1197)
Q Consensus 465 f~ 466 (1197)
|+
T Consensus 729 ~~ 730 (857)
T PRK10865 729 FG 730 (857)
T ss_pred cc
Confidence 54
No 361
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.69 E-value=0.2 Score=58.66 Aligned_cols=46 Identities=28% Similarity=0.302 Sum_probs=30.4
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHH
Q 000991 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI 357 (1197)
Q Consensus 306 Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~ 357 (1197)
+..++..+.+++|+|+|||||||.+ -.++..+ ...-+|+++.-+.+
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll-~aL~~~i-----p~~~ri~tiEd~~E 198 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFT-NAALREI-----PAIERLITVEDARE 198 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHH-HHHHhhC-----CCCCeEEEecCCCc
Confidence 3345678999999999999999866 3444433 12346666544433
No 362
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.66 E-value=0.25 Score=56.08 Aligned_cols=68 Identities=22% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHHHHHHc----CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 304 DALLKAISE----NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 304 ~~Il~~I~~----~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
++|.+.+.. .+++.|+|+.|+|||+.+..++-+... ...-.+.+.+.........++.+.+...++..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~--~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRI--KNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHH--CCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccc--cccccccccccccccccccccccccccccccc
Confidence 455555554 678999999999999888776644322 22234555554444443455666666666554
No 363
>PLN03025 replication factor C subunit; Provisional
Probab=91.66 E-value=1.2 Score=51.91 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=16.9
Q ss_pred CeEEEEecCCChHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~I 334 (1197)
..++++||+|+|||+.+-...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999997765443
No 364
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=0.61 Score=55.30 Aligned_cols=29 Identities=41% Similarity=0.555 Sum_probs=20.9
Q ss_pred HHHHHHHcC---CeEEEEecCCChHHHHHHHH
Q 000991 305 ALLKAISEN---QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 305 ~Il~~I~~~---~vvII~apTGSGKTtq~pq~ 333 (1197)
.+...+.++ +.++++||.|+|||+.+-.+
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 444445544 37889999999999777654
No 365
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.61 E-value=1.4 Score=51.28 Aligned_cols=53 Identities=23% Similarity=0.166 Sum_probs=35.0
Q ss_pred hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 400 GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 400 g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
--+.+.+...+...+..+|||||+|. ++....-.+||.+- ..|+..+|+++..
T Consensus 110 r~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~LE-EPp~~~fILi~~~ 162 (314)
T PRK07399 110 REIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTLE-EPGNGTLILIAPS 162 (314)
T ss_pred HHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHHh-CCCCCeEEEEECC
Confidence 34556666667778999999999996 55555555665553 3455656665543
No 366
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.34 E-value=0.35 Score=58.90 Aligned_cols=50 Identities=26% Similarity=0.390 Sum_probs=33.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~r 365 (1197)
+..+..++|.|++|+||||.+.+++.+... .+. +++++. ..+...|+..+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~--~vlYvs-~Ees~~qi~~r 126 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAA---AGG--KVLYVS-GEESASQIKLR 126 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCC--eEEEEE-ccccHHHHHHH
Confidence 446889999999999999999998876441 222 344432 23445566555
No 367
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.23 E-value=1.1 Score=57.09 Aligned_cols=35 Identities=29% Similarity=0.569 Sum_probs=26.4
Q ss_pred CCceEEEEcchHHHHHHhcCC---CCCCccEEEEecCCC
Q 000991 390 RDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHE 425 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaHe 425 (1197)
++++|+||-...|++-..+.. .|++ ++||+||||.
T Consensus 221 edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHN 258 (945)
T KOG1132|consen 221 EDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHN 258 (945)
T ss_pred ccCcEEEechhhhcCHhhhccccccccc-cEEEEecccc
Confidence 567899999988887554433 4544 7999999993
No 368
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.00 E-value=0.59 Score=54.46 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
.+.+...+......++|||++|. ++....-.+||.+-.-.++.-+|+.|..
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 34444455677899999999997 5666677777777665455555555544
No 369
>PRK04195 replication factor C large subunit; Provisional
Probab=90.96 E-value=1.4 Score=54.35 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.4
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+.+++.||+|+||||.+-.+
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 568999999999999877543
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.90 E-value=0.31 Score=52.12 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+-+...+..+.+++|+|||||||||.+- .++.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~-aL~~ 47 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLN-ALLA 47 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHH-HHHh
Confidence 4444556789999999999999998763 3443
No 371
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.87 E-value=0.56 Score=54.87 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=30.6
Q ss_pred HHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 404 RRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 404 r~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
..+...+...+..++||||+|. ++.+..-.+++.+-.-.++..+|+.+.
T Consensus 100 ~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 100 EEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 3344445667889999999996 455555566665554444555565443
No 372
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.72 E-value=1.1 Score=48.08 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC-cccceeeeEeeeccccCCC
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE-KLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~-~lg~~VGy~ir~e~~~~~~ 391 (1197)
++..+++||-.||||+-..+-+..... .+.++++..|.- -.|. +. .+....| ...
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-----~g~~v~vfkp~i------D~R~----~~~~V~Sr~G---------~~~ 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-----AGMKVLVFKPAI------DTRY----GVGKVSSRIG---------LSS 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-----cCCeEEEEeccc------cccc----ccceeeeccC---------Ccc
Confidence 567789999999999977666554332 123444433421 1111 00 0111111 012
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHHHHHhhh
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYF 465 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf 465 (1197)
.-++|-.+.-+...+........+++|.||||+= ..+-+...+..+.. ++-+-.|-+.++.+-..+-|
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF---~~~~~v~~l~~lad---~lgi~Vi~~GL~~DFrgepF 127 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQF---FDEELVYVLNELAD---RLGIPVICYGLDTDFRGEPF 127 (201)
T ss_pred cceecCChHHHHHHHHhcccCCCcCEEEEehhHh---CCHHHHHHHHHHHh---hcCCEEEEeccccccccCCC
Confidence 2345556666677776555444489999999993 33334444444433 22355666777666333334
No 373
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.71 E-value=3.9 Score=57.31 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHc--CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 297 LPSYKERDALLKAISE--NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~--~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
..+...|.+.+..+.. +++++|+|..|+||||.+- .+++.+..........|+.++||--+|..+.+ .|...
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~A 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVDA 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcch
Confidence 3456666666666665 5799999999999997754 33333221112223457777899877755432 22110
Q ss_pred cceeeeEeeeccccCCCceEEEEcchHHHHHH----hc-CCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceE
Q 000991 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRL----LV-DRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1197)
Q Consensus 375 g~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L----~~-d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lkl 449 (1197)
.|-..+|... .. +.....-++|||||+=. ++...+..+++.+-. .+.|+
T Consensus 1040 ----------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSM--v~~~~m~~Ll~~~~~--~garv 1093 (1747)
T PRK13709 1040 ----------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSM--VGNTDMARAYALIAA--GGGRA 1093 (1747)
T ss_pred ----------------------hhHHHHhcccccccccccCCCCCCcEEEEEcccc--ccHHHHHHHHHhhhc--CCCEE
Confidence 1111121110 00 11223448999999985 555555566555432 35688
Q ss_pred EEeccc
Q 000991 450 ILMSAT 455 (1197)
Q Consensus 450 IlmSAT 455 (1197)
|++-=+
T Consensus 1094 VLVGD~ 1099 (1747)
T PRK13709 1094 VSSGDT 1099 (1747)
T ss_pred EEecch
Confidence 877644
No 374
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.67 E-value=0.71 Score=57.79 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=21.8
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEec
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivt 352 (1197)
+.++|.|++|+|||..+ +.|...+... ....+++++
T Consensus 315 NpL~LyG~sGsGKTHLL-~AIa~~a~~~--~~g~~V~Yi 350 (617)
T PRK14086 315 NPLFIYGESGLGKTHLL-HAIGHYARRL--YPGTRVRYV 350 (617)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHHHh--CCCCeEEEe
Confidence 45899999999999544 3444433321 123456665
No 375
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=90.60 E-value=0.56 Score=56.53 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=42.7
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeee
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRL 384 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~ 384 (1197)
.+.-++.|.||||||......|.+ - +.. .+|++|.+.||-|++..+.+.+-.+ .|-|.|..
T Consensus 32 ~~~QtLLGvTGSGKTfT~AnVI~~-----~-~rP--tLV~AhNKTLAaQLy~Efk~fFP~N---aVEYFVSY 92 (663)
T COG0556 32 LKHQTLLGVTGSGKTFTMANVIAK-----V-QRP--TLVLAHNKTLAAQLYSEFKEFFPEN---AVEYFVSY 92 (663)
T ss_pred ceeeEEeeeccCCchhHHHHHHHH-----h-CCC--eEEEecchhHHHHHHHHHHHhCcCc---ceEEEeee
Confidence 456778899999999766655543 1 222 4555699999999999998877654 45555543
No 376
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=90.56 E-value=0.51 Score=60.56 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeee
Q 000991 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGY 380 (1197)
Q Consensus 301 ~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy 380 (1197)
..|.+++.. ....++|.|..|||||+.+..-+...+...+ -....|+++..|+.+|.++-+|+.+.+|..
T Consensus 4 ~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------- 73 (664)
T TIGR01074 4 PQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-YKARNIAAVTFTNKAAREMKERVAKTLGKG------- 73 (664)
T ss_pred HHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhCcc-------
Confidence 345555543 3567899999999999888877766543212 234578888899999999999997766521
Q ss_pred EeeeccccCCCceEEEEcchHHHHHHhcCC--CCC-CccEEEEecCC
Q 000991 381 KVRLEGMKGRDTRLMFCTTGILLRRLLVDR--SLR-GVTHVIVDEIH 424 (1197)
Q Consensus 381 ~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~-~is~VIIDEaH 424 (1197)
...++.|.|--.|...+.... .+. .-..-|+||..
T Consensus 74 ---------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~ 111 (664)
T TIGR01074 74 ---------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETD 111 (664)
T ss_pred ---------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHH
Confidence 123577888766644443221 000 11234678775
No 377
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.42 E-value=0.45 Score=52.30 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=30.1
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecc
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivtq 353 (1197)
-.+..++|.|++|+|||+.+.|++.+.+... |..|..+.+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~e 57 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFE 57 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEec
Confidence 3588999999999999999999999876431 3445444443
No 378
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.36 E-value=0.47 Score=56.12 Aligned_cols=32 Identities=34% Similarity=0.632 Sum_probs=23.0
Q ss_pred HHHHHH-cCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 306 LLKAIS-ENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 306 Il~~I~-~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+.+.+. .+..++|+|||||||||.+ ..++..+
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 333444 6789999999999999876 4455544
No 379
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.30 E-value=1 Score=52.41 Aligned_cols=52 Identities=27% Similarity=0.254 Sum_probs=35.7
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
+.+.+...+...+..++||||+|. ++..-.-.+||.+-.-.++..+|+.|..
T Consensus 101 l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 101 ISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 344444456667899999999997 5666677777766554456667776654
No 380
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.16 E-value=1.7 Score=56.13 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.5
Q ss_pred CeEEEEecCCChHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ 333 (1197)
..+++.||+|+||||.+-..
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47899999999999877543
No 381
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.15 E-value=1.7 Score=53.14 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=88.5
Q ss_pred cCCCHHHHHHHHHHHH----------cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHH
Q 000991 296 SLPSYKERDALLKAIS----------ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~----------~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~r 365 (1197)
.+++.++|.-|+.+|. .-...+|.-|-+-||||.+.-+.+...+-.. .....+.+++|+..-|.++...
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHH
Confidence 3667788888888885 1235788899999999887744444443222 2344677778998887777665
Q ss_pred HHHHhCCc--ccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC---CCCCccEEEEecCCCCCCChhHHHHHHHHH
Q 000991 366 VAAERGEK--LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1197)
Q Consensus 366 Va~e~g~~--lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaHeR~~~~D~Ll~lLr~l 440 (1197)
++.-.-.. +...++++. ....|.+.-....++.+..++ .-.+..+.|+||.|+.+-..+ +...++.-
T Consensus 138 ar~mv~~~~~l~~~~~~q~-------~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~-~~~~~~~g 209 (546)
T COG4626 138 ARDMVKRDDDLRDLCNVQT-------HSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQED-MYSEAKGG 209 (546)
T ss_pred HHHHHHhCcchhhhhcccc-------ceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHH-HHHHHHhh
Confidence 54332111 111122111 011133333333444444444 334578999999997543333 44445555
Q ss_pred cccCccceEEEeccc
Q 000991 441 LPRRPELRLILMSAT 455 (1197)
Q Consensus 441 l~~r~~lklIlmSAT 455 (1197)
+..+|+..++..|-.
T Consensus 210 ~~ar~~~l~~~ITT~ 224 (546)
T COG4626 210 LGARPEGLVVYITTS 224 (546)
T ss_pred hccCcCceEEEEecC
Confidence 667788888877764
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.07 E-value=0.62 Score=57.50 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=35.7
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
+..+..++|.||+|+||||.+.|++.+.+ .+|..+.++-. -+...|+..+.
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~---eEs~~~i~~~~ 310 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAY---EESRAQLLRNA 310 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEe---eCCHHHHHHHH
Confidence 44688999999999999999999988755 23444544443 34445555554
No 383
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=89.93 E-value=1.1 Score=51.15 Aligned_cols=67 Identities=27% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCChhHHHHHHHhcCCCCCcceeee-ccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCCC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTKQ-LKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGDR 1173 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1173 (1197)
.-|-++||++..|.|. .|+|.+-+ .++.| |+.-|.|....=+|+ +++||.|.+.||-.++..|++..
T Consensus 38 KS~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~~~a~Ge-G~sKK~AKh~AA~~~L~~lk~l~ 108 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGEITATGE-GKSKKLAKHRAAEALLKELKKLP 108 (339)
T ss_pred CChHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEeeeEEecC-CCchhHHHHHHHHHHHHHHhcCC
Confidence 6789999999999885 48898844 67766 888888888888887 79999999999999999999844
No 384
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=89.84 E-value=0.49 Score=61.30 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
...|.+++.. ....++|.|..|||||+.+..-+...+ ....-....|+++..|+-+|..+.+|+.+..+
T Consensus 6 n~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li-~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 6 NDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLL-SVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred CHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3455565543 356788999999999988776665433 22222445789989999999999999977654
No 385
>PTZ00293 thymidine kinase; Provisional
Probab=89.67 E-value=1.2 Score=48.51 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.0
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
.|...++.||-+|||||.+.+.+....
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~ 29 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFT 29 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHH
Confidence 467889999999999998888766543
No 386
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=89.40 E-value=0.67 Score=60.10 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
+...|.+++.. ....++|.|..|||||+.+..-+...+ ....-..-.|+++.-|+-+|.++.+|+.+..+
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li-~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLM-QVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 44556665553 346788899999999988766555433 22222345799999999999999999987654
No 387
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=89.25 E-value=1.8 Score=61.73 Aligned_cols=124 Identities=19% Similarity=0.155 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHc--CCeEEEEecCCChHHHHHH---HHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 297 LPSYKERDALLKAISE--NQVVVVSGETGCGKTTQLP---QYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~--~~vvII~apTGSGKTtq~p---q~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
..+...|.+.+..+.. ++.++|.|..|+||||.+- ..+.+.+ + .....|+.++|+-.+|..+.+ .|
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~---~~g~~v~glApT~~Aa~~L~~-----~g 1088 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E---SEQLQVIGLAPTHEAVGELKS-----AG 1088 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H---hcCCeEEEEeChHHHHHHHHh-----cC
Confidence 3456667777776654 5789999999999998773 2333332 2 123567777899887766532 12
Q ss_pred CcccceeeeEeeeccccCCCceEEEEcchHHHHH---HhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 372 EKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRR---LLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~---L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
... . |-..++.. ....+.+...++|||||+=. +.+..+..+++.+.. ++.|
T Consensus 1089 ~~a-~---------------------Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasM--v~~~~~~~l~~~~~~--~~ak 1142 (1960)
T TIGR02760 1089 VQA-Q---------------------TLDSFLTDISLYRNSGGDFRNTLFILDESSM--VSNFQLTHATELVQK--SGSR 1142 (1960)
T ss_pred Cch-H---------------------hHHHHhcCcccccccCCCCcccEEEEEcccc--ccHHHHHHHHHhccC--CCCE
Confidence 110 0 11111110 01112345668999999984 555555555554432 4567
Q ss_pred EEEeccc
Q 000991 449 LILMSAT 455 (1197)
Q Consensus 449 lIlmSAT 455 (1197)
+|++-=+
T Consensus 1143 ~vlvGD~ 1149 (1960)
T TIGR02760 1143 AVSLGDI 1149 (1960)
T ss_pred EEEeCCh
Confidence 7776543
No 388
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.24 E-value=0.49 Score=51.88 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=24.0
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..++++.|.|++|||||+.+.+++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 44588999999999999988887776543
No 389
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.17 E-value=1.2 Score=59.32 Aligned_cols=32 Identities=38% Similarity=0.635 Sum_probs=25.1
Q ss_pred HHHHHHHHH---cCCeEEEEecCCChHHHHHHHHH
Q 000991 303 RDALLKAIS---ENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 303 q~~Il~~I~---~~~vvII~apTGSGKTtq~pq~I 334 (1197)
+..+++.+. ..+.++|+||.|+||||.+.+++
T Consensus 19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~ 53 (903)
T PRK04841 19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWA 53 (903)
T ss_pred chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHH
Confidence 445555554 45789999999999999998877
No 390
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.17 E-value=2.6 Score=48.68 Aligned_cols=134 Identities=21% Similarity=0.243 Sum_probs=76.0
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
-.+++++|-.|+||||.+.-.... +. ..|..+.+.-.=--|+.|+..-+..++..|..+-. .. .-+..+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~-l~--~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~-------~~-~G~DpA 207 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKY-LK--QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS-------GK-EGADPA 207 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHH-HH--HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc-------cC-CCCCcH
Confidence 347888999999999988765432 22 33444444444467888887777666665544321 11 111112
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc-C------ccceEEEecccC--CHHHHHh
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR-R------PELRLILMSATL--NAELFSS 463 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~-r------~~lklIlmSATl--~~~~f~~ 463 (1197)
.| ..+-+.. ..-+++++|++|=+- |--+-.-|+.-|+.+.+. . |+-.++.+=||. |+-.-++
T Consensus 208 aV-------afDAi~~-Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk 278 (340)
T COG0552 208 AV-------AFDAIQA-AKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK 278 (340)
T ss_pred HH-------HHHHHHH-HHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH
Confidence 23 2333322 135689999999998 434445566666655441 1 222456668998 4333344
Q ss_pred hhC
Q 000991 464 YFG 466 (1197)
Q Consensus 464 yf~ 466 (1197)
.|.
T Consensus 279 ~F~ 281 (340)
T COG0552 279 IFN 281 (340)
T ss_pred HHH
Confidence 554
No 391
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.97 E-value=3.6 Score=47.88 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=56.4
Q ss_pred EEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEee--eccc--cCCCc
Q 000991 317 VVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVR--LEGM--KGRDT 392 (1197)
Q Consensus 317 II~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir--~e~~--~~~~t 392 (1197)
++.|+.|+|||+.....++..++.. .....++++.....+...+......... ......++... .+.. .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~nG~ 77 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR--PPGRRVIIASTYRQARDIFGRFWKGIIE-LLPSWFEIKFNEWNDRKIILPNGS 77 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS--SS--EEEEEESSHHHHHHHHHHHHHHHH-TS-TTTS--EEEE-SSEEEETTS-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC--CCCcEEEEecCHHHHHHHHHHhHHHHHH-HHHHhcCcccccCCCCcEEecCce
Confidence 5789999999999888887776532 2234555554555555543332211111 11111111111 1111 12345
Q ss_pred eEEEEcchH--HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 393 RLMFCTTGI--LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 393 ~Ilv~Tpg~--LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
.|.+.+.+- -...+.. ..++.||+||+-. +..+.....+............+..|-|.
T Consensus 78 ~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 78 RIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred EEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 566666432 1222332 5678999999764 33344444444444433333333555554
No 392
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.77 E-value=2 Score=44.62 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=58.0
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccC----
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKG---- 389 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~---- 389 (1197)
-.+.|+|++|+||||.+. -+.+.+...+- .-+-+++ | .|. .-|..+||.+..-....
T Consensus 6 mki~ITG~PGvGKtTl~~-ki~e~L~~~g~-kvgGf~t--~----------EVR-----~gGkR~GF~Ivdl~tg~~~~l 66 (179)
T COG1618 6 MKIFITGRPGVGKTTLVL-KIAEKLREKGY-KVGGFIT--P----------EVR-----EGGKRIGFKIVDLATGEEGIL 66 (179)
T ss_pred eEEEEeCCCCccHHHHHH-HHHHHHHhcCc-eeeeEEe--e----------eee-----cCCeEeeeEEEEccCCceEEE
Confidence 357899999999997664 55565543221 1122333 2 121 23556777664311100
Q ss_pred ---CCceEEEEcchHHHHHHhc---C---CCCCCccEEEEecCCCCCCChhHHHHHHHHHccc
Q 000991 390 ---RDTRLMFCTTGILLRRLLV---D---RSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1197)
Q Consensus 390 ---~~t~Ilv~Tpg~LLr~L~~---d---~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~ 443 (1197)
.....-++-.++.++.+.. . ..+..-++|||||+--+-+.+.-+...+..++..
T Consensus 67 a~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 67 ARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 0122223333333322210 0 1344578999999996556666666666666654
No 393
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.70 E-value=3.7 Score=53.75 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.3
Q ss_pred cCCeEEEEecCCChHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~p 331 (1197)
.+..+++.||+|+|||+.+-
T Consensus 346 ~~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35679999999999996554
No 394
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.67 E-value=0.75 Score=51.16 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=34.7
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
+..+..++|.|++|||||+.+.+++.+.+. +|..+..+-+ -+...++.++.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~---ee~~~~i~~~~ 68 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVAL---EEHPVQVRRNM 68 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEe---eCCHHHHHHHH
Confidence 346889999999999999999999988652 2444433333 23344555544
No 395
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.63 E-value=1.3 Score=54.21 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=21.1
Q ss_pred HHHHHHHcC---CeEEEEecCCChHHHHHHHHH
Q 000991 305 ALLKAISEN---QVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 305 ~Il~~I~~~---~vvII~apTGSGKTtq~pq~I 334 (1197)
.+...+..+ +..++.||.|+|||+.+-.+.
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 344445444 457899999999998776544
No 396
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.58 E-value=0.77 Score=54.54 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=25.6
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEec
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivt 352 (1197)
..+..++|+|||||||||.+ ..+++.+.+. ....+|+.+
T Consensus 147 ~~~GlilI~G~TGSGKTT~l-~al~~~i~~~--~~~~~Ivti 185 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLA-ASIYQHCGET--YPDRKIVTY 185 (372)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHHhc--CCCceEEEE
Confidence 45678899999999999876 3455554321 123456654
No 397
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.51 E-value=0.59 Score=52.96 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=22.1
Q ss_pred HHHHHHH-cCCeEEEEecCCChHHHHHHHHHHHH
Q 000991 305 ALLKAIS-ENQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 305 ~Il~~I~-~~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
.+..++. .+..++|+|+|||||||.+-. +++.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~a-ll~~ 103 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYS-ALSE 103 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHH-HHhh
Confidence 3444454 356899999999999987743 4443
No 398
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=88.36 E-value=3.1 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=18.6
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
-.+..|+|.|+||+||++.+-+
T Consensus 99 p~~~~vLi~GetGtGKel~A~~ 120 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARL 120 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHH
Confidence 3688999999999999976643
No 399
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=88.33 E-value=0.33 Score=57.62 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=21.6
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+-.|+.+.|.||+|+||||.+ ..|...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhh
Confidence 357999999999999999754 3455544
No 400
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.25 E-value=0.9 Score=53.34 Aligned_cols=54 Identities=24% Similarity=0.181 Sum_probs=36.6
Q ss_pred hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 400 GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 400 g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
--|.+.+...+...++.++|||++|. ++..-.-.+||.+-.-.++..+|+.|..
T Consensus 118 R~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 118 RALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 33455555556677899999999997 5666667777776654455556665554
No 401
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=88.24 E-value=0.87 Score=52.73 Aligned_cols=49 Identities=24% Similarity=0.210 Sum_probs=31.1
Q ss_pred HHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHH
Q 000991 305 ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISA 359 (1197)
Q Consensus 305 ~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA 359 (1197)
-+..++....+++|+|.|||||||.+--+... + ...-+|||+.-+.+|-
T Consensus 165 ~L~~av~~r~NILisGGTGSGKTTlLNal~~~--i----~~~eRvItiEDtaELq 213 (355)
T COG4962 165 FLRRAVGIRCNILISGGTGSGKTTLLNALSGF--I----DSDERVITIEDTAELQ 213 (355)
T ss_pred HHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc--C----CCcccEEEEeehhhhc
Confidence 33444555569999999999999865432221 1 1223788877666553
No 402
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.92 E-value=1.2 Score=53.08 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=24.3
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..+..++|.|++|+||||.+.+++.+..
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999988876543
No 403
>PHA00729 NTP-binding motif containing protein
Probab=87.90 E-value=0.94 Score=49.93 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.4
Q ss_pred CeEEEEecCCChHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ 333 (1197)
.+++|.|++|+|||+.+...
T Consensus 18 ~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 37999999999999766543
No 404
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.88 E-value=1.1 Score=50.61 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=23.3
Q ss_pred chHHHHHHhcCCCCCCccEEEEecCCCCCCCh-hHHHHHHHH
Q 000991 399 TGILLRRLLVDRSLRGVTHVIVDEIHERGMNE-DFLLIVLKE 439 (1197)
Q Consensus 399 pg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~-D~Ll~lLr~ 439 (1197)
||=|...|. .|+.-+++.|||+|..+... +.|...+.+
T Consensus 91 ~gDlaaiLt---~Le~~DVLFIDEIHrl~~~vEE~LYpaMED 129 (332)
T COG2255 91 PGDLAAILT---NLEEGDVLFIDEIHRLSPAVEEVLYPAMED 129 (332)
T ss_pred hhhHHHHHh---cCCcCCeEEEehhhhcChhHHHHhhhhhhh
Confidence 455555554 47777999999999644333 344444443
No 405
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.84 E-value=0.65 Score=54.69 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=20.0
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
.+..++|+|||||||||..- .++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~-al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA-SMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH-HHHHhh
Confidence 46899999999999998774 344433
No 406
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.79 E-value=4 Score=53.01 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.9
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
..++++.||+|+|||+.+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 5688999999999996653
No 407
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.79 E-value=0.57 Score=40.96 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=16.0
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
+.+++|+|++||||||.+-
T Consensus 23 g~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLD 41 (62)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4589999999999997653
No 408
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=87.76 E-value=4.7 Score=52.65 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH--------cCCeEEEEecCCChHHHHHH
Q 000991 300 YKERDALLKAIS--------ENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 300 ~~~q~~Il~~I~--------~~~vvII~apTGSGKTtq~p 331 (1197)
...++.|++.+. .+..+++.||+|+|||+.+-
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHH
Confidence 455666765543 36689999999999996553
No 409
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.72 E-value=0.42 Score=54.13 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=20.1
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
.+.-|+|.|||||||||... .+++.+
T Consensus 124 ~~GLILVTGpTGSGKSTTlA-amId~i 149 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLA-AMIDYI 149 (353)
T ss_pred CCceEEEeCCCCCcHHHHHH-HHHHHH
Confidence 46788999999999998765 445554
No 410
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=87.71 E-value=0.71 Score=43.50 Aligned_cols=51 Identities=31% Similarity=0.383 Sum_probs=35.0
Q ss_pred CCCCcceeeeccCCceEEEEEEcC----eeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1120 HGAPAYKTKQLKNNQFRSTVIFNG----LNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1120 ~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
...|.|......+ .|+++|.+=. ..|.|.|+.+||.|.+.||-+|..-|-.
T Consensus 19 ~~~P~~~~~~~~~-~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~ 73 (90)
T PF03368_consen 19 NLKPEFEIEKIGS-GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHE 73 (90)
T ss_dssp -SS-EEEEEE--G--EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCC-cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHH
Confidence 3568888877554 8999998753 2399999999999999999999998864
No 411
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.63 E-value=0.46 Score=46.44 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=15.1
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
+++|+|++||||||.+-.
T Consensus 1 vI~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 578999999999986643
No 412
>PRK05973 replicative DNA helicase; Provisional
Probab=87.58 E-value=0.61 Score=51.93 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+++.-.+..+..++|.|++|+|||+.+.+++.+.+
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 55677788899999999999999999999988765
No 413
>PHA00149 DNA encapsidation protein
Probab=87.53 E-value=5.4 Score=45.04 Aligned_cols=143 Identities=19% Similarity=0.239 Sum_probs=82.2
Q ss_pred EEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHH-HHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCceE
Q 000991 316 VVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR-ISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRL 394 (1197)
Q Consensus 316 vII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR-~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~I 394 (1197)
-.|.|.-|-|||.++--.+++.++..++ ..|++--.. ++.. ...-++.+.-+.+.. -+.|......-..-.|
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~kge----qfiYLRr~k~El~~-k~~Ff~d~~~~~~~~--~F~Vkg~ki~~~~k~i 92 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIKKGE----QFIYLRRYKSELKK-KSKFFADIAQEFPNT--EFEVKGRKIYIKGKLI 92 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHhcCc----EEEEEEecchhhhh-hhhhhHHHHHhCCCC--ceEEEccEEEEcCeEE
Confidence 3456999999999999998888886543 344421111 2211 223333333222211 1112111111122334
Q ss_pred EEEcchHHHHHHhcCCCCCCccEEEEecCCC-CC------CChhHHHHHHHHHcccCccceEEEecccC-CHHHHHhhhC
Q 000991 395 MFCTTGILLRRLLVDRSLRGVTHVIVDEIHE-RG------MNEDFLLIVLKELLPRRPELRLILMSATL-NAELFSSYFG 466 (1197)
Q Consensus 395 lv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe-R~------~~~D~Ll~lLr~ll~~r~~lklIlmSATl-~~~~f~~yf~ 466 (1197)
-+.-|=.-+..+. .....++.+|++||+-. ++ -+.+.++.++..+.+.+.+++++++|-.. ..+-+-.||+
T Consensus 93 gy~i~LS~~q~~K-s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~yfg 171 (331)
T PHA00149 93 GYAIPLSTWQALK-SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFLYFG 171 (331)
T ss_pred EEEEehhhHHhhc-ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhheec
Confidence 4554433333333 33678999999999983 21 23467888999999999999999999765 3334455655
No 414
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=87.50 E-value=3 Score=48.81 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~ 330 (1197)
+.+..+...+..|+|.|++|+||++.+
T Consensus 13 ~~~~~~a~~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 13 EQVSRLAPLDRPVLIIGERGTGKELIA 39 (329)
T ss_pred HHHHHHhCCCCCEEEECCCCChHHHHH
Confidence 445555567888999999999999654
No 415
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=87.49 E-value=1.8 Score=50.02 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHcCC--eEEEEecCCChHHHHHHHHH
Q 000991 306 LLKAISENQ--VVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 306 Il~~I~~~~--vvII~apTGSGKTtq~pq~I 334 (1197)
+...|++|+ .+|+.||.|+|||+.+-+.+
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHH
Confidence 334455554 68999999999998765433
No 416
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=87.43 E-value=2.5 Score=47.07 Aligned_cols=61 Identities=28% Similarity=0.409 Sum_probs=36.5
Q ss_pred HHHHHHHcCC-eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh
Q 000991 305 ALLKAISENQ-VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER 370 (1197)
Q Consensus 305 ~Il~~I~~~~-vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~ 370 (1197)
.+-..+..++ .+.++|+-|||||+..= .+++.. .++..+.|++-.|+- ....+.+++...+
T Consensus 42 ~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~---~~d~~~~v~i~~~~~-s~~~~~~ai~~~l 103 (269)
T COG3267 42 MLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASL---NEDQVAVVVIDKPTL-SDATLLEAIVADL 103 (269)
T ss_pred HHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhc---CCCceEEEEecCcch-hHHHHHHHHHHHh
Confidence 3445567777 99999999999996554 555433 233445445544543 3344555554443
No 417
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.42 E-value=1.6 Score=50.28 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=15.7
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
+.++++||+|+|||+.+-.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5689999999999966543
No 418
>PF12846 AAA_10: AAA-like domain
Probab=87.40 E-value=0.71 Score=52.39 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=26.8
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRIS 358 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~L 358 (1197)
|.+++|+|+||||||+.+- .++...+..+ ..++++=|....
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g----~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRG----PRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcC----CCEEEEcCCchH
Confidence 5789999999999997776 4444444322 345554455443
No 419
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.37 E-value=1.1 Score=52.58 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
+.+.+...+...++.++|||++|. ++...--.+||.+-.-.++.-+|+.|.-
T Consensus 96 l~~~~~~~~~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 96 VTEKLYEHARLGGAKVVWLPDAAL--LTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred HHHHHhhccccCCceEEEEcchHh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 445555566778899999999996 5666667777776554444445555543
No 420
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.25 E-value=2.3 Score=49.37 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=27.7
Q ss_pred cCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 408 VDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 408 ~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
..|...+..++||||+|. ++.+..-.+++.+-.-.++..+|+.+
T Consensus 87 ~~p~~~~~kv~iI~~ad~--m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 87 KKPYEGDKKVIIIYNSEK--MTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCcccCCceEEEEechhh--cCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 456778899999999996 44444555565554433344444444
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.14 E-value=4.6 Score=53.47 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=33.7
Q ss_pred hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC--------ccc--eEEEecccCCHHHHHhhh
Q 000991 400 GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR--------PEL--RLILMSATLNAELFSSYF 465 (1197)
Q Consensus 400 g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r--------~~l--klIlmSATl~~~~f~~yf 465 (1197)
|.|...+...| +++|++||++. ...+....++..+-..+ -+. -+|+||..+..+.+.+.+
T Consensus 657 g~l~~~v~~~p----~~vlllDeiek--a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~ 726 (852)
T TIGR03346 657 GQLTEAVRRKP----YSVVLFDEVEK--AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELA 726 (852)
T ss_pred cHHHHHHHcCC----CcEEEEecccc--CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhc
Confidence 44544444333 47999999996 55665555554432110 112 267788777666555543
No 422
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=87.06 E-value=1.1 Score=50.61 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=37.8
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
+..+.+++|.|++|||||+.+.||+.+.+- .|..|..+- +.+...++.+.... +|...
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---~ge~vlyvs---~~e~~~~l~~~~~~-~g~d~ 77 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAR---EGEPVLYVS---TEESPEELLENARS-FGWDL 77 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHh---cCCcEEEEE---ecCCHHHHHHHHHH-cCCCH
Confidence 456899999999999999999999988663 244443333 33444444443332 45443
No 423
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.04 E-value=0.48 Score=51.20 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=18.0
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
..++|+|||||||||.+- .++..+
T Consensus 2 GlilI~GptGSGKTTll~-~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA-AMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHHh
Confidence 468999999999998764 344443
No 424
>PRK04328 hypothetical protein; Provisional
Probab=86.99 E-value=1.1 Score=50.37 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=29.6
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEec
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivt 352 (1197)
..+..++|.|++|||||+.+.+++.+.+. +|..+.++-+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEe
Confidence 35889999999999999999999887552 3444544443
No 425
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.87 E-value=2.8 Score=50.26 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.7
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
...+++.||+|||||+.+-
T Consensus 165 p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCceEEECCCCCChHHHHH
Confidence 4568999999999996654
No 426
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.84 E-value=1 Score=52.64 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=16.0
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
.+.+++.||+|+|||+.+-
T Consensus 51 ~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3578999999999997665
No 427
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.74 E-value=0.35 Score=59.29 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=35.8
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCC
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~ 457 (1197)
+.......|.-.++.+.||||||. +.....-++||.+-.-.+++.+|+ ||-+
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvHM--LS~~afNALLKTLEEPP~hV~FIl--ATTe 158 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVHM--LSKQAFNALLKTLEEPPSHVKFIL--ATTE 158 (515)
T ss_pred HHHHhccCCccccceEEEEecHHh--hhHHHHHHHhcccccCccCeEEEE--ecCC
Confidence 444455566788999999999996 666677788888766444444444 5543
No 428
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=86.56 E-value=1.8 Score=51.77 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 308 KAISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 308 ~~I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
..++++.+++..||+|+|||..+...-..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 56789999999999999999666544333
No 429
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=86.40 E-value=1.1 Score=52.51 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.6
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
+..+.++.|+|++|||||+...++++...+
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~ql 152 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQL 152 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhc
Confidence 345789999999999999888888876554
No 430
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.34 E-value=5.4 Score=47.66 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=82.9
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
-.+++.+|=-||||||.+.-... ++.. ++..+.++++=..|.+|...-+.+++..+.++-.. .....
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~----------~~~~~ 166 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS----------GTEKD 166 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecC----------CCCCC
Confidence 35688899999999998876543 2332 66777788887889999888887877665443211 10111
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC--CHHHHHhhhC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL--NAELFSSYFG 466 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl--~~~~f~~yf~ 466 (1197)
.+-++..+ +... ....+++||||=+-...++.+++..+...--..+|+=-++.+-|++ ++...++-|+
T Consensus 167 Pv~Iak~a--l~~a----k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 167 PVEIAKAA--LEKA----KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred HHHHHHHH--HHHH----HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 11111111 1212 2456899999999855566665555443333356777777788887 5555555554
No 431
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.24 E-value=0.86 Score=52.83 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=20.8
Q ss_pred HHHHHcCCeEEEEecCCChHHHHHH
Q 000991 307 LKAISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 307 l~~I~~~~vvII~apTGSGKTtq~p 331 (1197)
--++..+.+++|+|+|||||||.+-
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHH
Confidence 3446788999999999999998663
No 432
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=85.85 E-value=11 Score=43.73 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=67.0
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEec----chHHHHHHHHHHHHHHHhCCcccceeeeEeeeccc
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT----QPRRISAMAVSERVAAERGEKLGESVGYKVRLEGM 387 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivt----qPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~ 387 (1197)
+.+.|++.||-|||||+.+--.+.+ .- ..|....++=+ +--+.+...++..++.+.... +...| +.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q--~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g------sf 117 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQ--ENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG------SF 117 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HH--hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec------cc
Confidence 5678999999999999655444443 21 22233333222 223445555556565554321 11111 00
Q ss_pred cCCCceEEEEcchHHHHHHhcCCCCCCc-cEEEEecCCCCC--CChhHHHHHHHHHcccCccceEEEecccCCH
Q 000991 388 KGRDTRLMFCTTGILLRRLLVDRSLRGV-THVIVDEIHERG--MNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1197)
Q Consensus 388 ~~~~t~Ilv~Tpg~LLr~L~~d~~L~~i-s~VIIDEaHeR~--~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~ 458 (1197)
. + +-..|+..|..+..-... -++|+||++--. ...-.+..++......+..+=+|++|--+|.
T Consensus 118 t-e-------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 118 T-E-------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred c-h-------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 0 0 113455555555444444 456788888211 1223444555555545566778888888764
No 433
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=3.5 Score=50.00 Aligned_cols=103 Identities=24% Similarity=0.416 Sum_probs=57.4
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCceE
Q 000991 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRL 394 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~I 394 (1197)
.+++.||.|||||+.+.+..+. ..-+..+|+ .|....-.+=..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKii--Spe~miG~sEsaKc~~-------------------------- 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS-----SDFPFVKII--SPEDMIGLSESAKCAH-------------------------- 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh-----cCCCeEEEe--ChHHccCccHHHHHHH--------------------------
Confidence 5899999999999877776654 222333443 3665433222222211
Q ss_pred EEEcchHHHHHHhcCCCCCCccEEEEecCCCCCC--------ChhHHHHHHHHHcccCc--cceEEEecccCCHH
Q 000991 395 MFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGM--------NEDFLLIVLKELLPRRP--ELRLILMSATLNAE 459 (1197)
Q Consensus 395 lv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~--------~~D~Ll~lLr~ll~~r~--~lklIlmSATl~~~ 459 (1197)
++....|..-+.+++||||++. |-+ .+..++..|.-++++.| +.|++++.-|-..+
T Consensus 587 --------i~k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 587 --------IKKIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred --------HHHHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 1112223344567889999987 322 23455666666666544 34677776664444
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.70 E-value=0.53 Score=52.83 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=21.0
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
+..|+.++|.||.|+||||.+ ..+...
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl-r~I~n~ 39 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL-QSIANA 39 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHhc
Confidence 367999999999999999754 444443
No 435
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.55 E-value=3 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.741 Sum_probs=18.3
Q ss_pred cCCeEEEEecCCChHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~I 334 (1197)
.++.+++.||+||||||.+-...
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999998765443
No 436
>CHL00176 ftsH cell division protein; Validated
Probab=85.45 E-value=4.3 Score=51.70 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.1
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
.+.+++.||+|+|||+.+-.
T Consensus 216 p~gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45699999999999966543
No 437
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=85.32 E-value=3 Score=48.63 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 403 LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 403 Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
.+.+...+...++.++|||+||. ++...--.+||.+-.-.++.-+|+.|..
T Consensus 97 ~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 97 NRLAQESSQLNGYRLFVIEPADA--MNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred HHHHhhCcccCCceEEEecchhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 34444455677899999999997 5666667777776664455556665554
No 438
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.31 E-value=3.1 Score=54.88 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=17.6
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
..+++++.||+|+|||+.+-.+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHH
Confidence 4568899999999999766443
No 439
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.28 E-value=2.4 Score=55.17 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.0
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
.+.+++.||+|||||+.+-.
T Consensus 487 ~~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999966543
No 440
>PRK13695 putative NTPase; Provisional
Probab=85.22 E-value=4.1 Score=42.82 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=17.3
Q ss_pred eEEEEecCCChHHHHHHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
.++|+|+.||||||.+-. ++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~-i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK-IAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHH
Confidence 478999999999987764 44433
No 441
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.20 E-value=0.72 Score=46.41 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=16.3
Q ss_pred eEEEEecCCChHHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~I 334 (1197)
+++++|++||||||.+-.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57999999999998765543
No 442
>PRK10436 hypothetical protein; Provisional
Probab=85.19 E-value=1.1 Score=54.77 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=22.2
Q ss_pred HHHHH-HcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 306 LLKAI-SENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 306 Il~~I-~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+...+ ..+..++|+|||||||||..- .+++.+
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~-a~l~~~ 242 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY-SALQTL 242 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH-HHHHhh
Confidence 33444 356789999999999998763 344443
No 443
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.11 E-value=1.1 Score=55.02 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=14.6
Q ss_pred CCeEEEEecCCChHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~ 330 (1197)
-.-|+++||+|||||+.+
T Consensus 545 PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCceEEeCCCCccHHHHH
Confidence 456899999999999543
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.07 E-value=0.51 Score=51.21 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=18.4
Q ss_pred HHcCCeEEEEecCCChHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~ 330 (1197)
+..+.+++|+||.||||||.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 468999999999999999744
No 445
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=84.94 E-value=7.5 Score=44.59 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=75.6
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHH----HHHHHHHHHHHHHhCCcccceeeeEeeecccc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR----ISAMAVSERVAAERGEKLGESVGYKVRLEGMK 388 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR----~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~ 388 (1197)
+..-.|.|.-|-|||.++--.+++..++.+. ..|++--.+ .++......+++++...--...|-.+-.
T Consensus 17 ~~~~~viG~RgiGKtya~k~~~i~df~~~G~----qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~vk~~k~~i---- 88 (333)
T PF05894_consen 17 RILNFVIGARGIGKTYALKKKLIKDFIEYGE----QFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFEVKGNKIYI---- 88 (333)
T ss_pred ceEEEEEecccccchhHHHHHHHHHHHhcCC----EEEEEEecchHHHHHhhHHHHHHHHhCCCCcEEEEccEEEE----
Confidence 3344566999999999999999998887543 344421111 1233333344444321111112211111
Q ss_pred CCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCC-CCCC------ChhHHHHHHHHHcccCccceEEEeccc
Q 000991 389 GRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIH-ERGM------NEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 389 ~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaH-eR~~------~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
.+-.|.+.+|=.-... ..+....++.+||+||+- |++- ..+.|+.++..+-+.+.+++++++|--
T Consensus 89 -dgk~~g~~~~Ls~~q~-~Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~Na 160 (333)
T PF05894_consen 89 -DGKLIGYFIPLSGWQK-LKSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSNA 160 (333)
T ss_pred -CCeEEEEEEecchhhh-cccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEecc
Confidence 1222333333111221 223478899999999998 5432 224678888888888999999999874
No 446
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=84.94 E-value=1.5 Score=56.91 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
...|.+++.. ....++|.|..|||||+.+..-|...+.. ..-..-+|+++.-|+-+|..+.+|+.+..+.
T Consensus 6 n~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~-~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------- 75 (726)
T TIGR01073 6 NPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAE-KNVAPWNILAITFTNKAAREMKERVEKLLGP------- 75 (726)
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHc-CCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-------
Confidence 3456666554 35678889999999998877666544322 2123346888889999999999999765432
Q ss_pred eEeeeccccCCCceEEEEcchHHHHH-HhcCCC-CC-CccEEEEecCC
Q 000991 380 YKVRLEGMKGRDTRLMFCTTGILLRR-LLVDRS-LR-GVTHVIVDEIH 424 (1197)
Q Consensus 380 y~ir~e~~~~~~t~Ilv~Tpg~LLr~-L~~d~~-L~-~is~VIIDEaH 424 (1197)
....+.++|--.+... |..... +. .-.+-|+|+..
T Consensus 76 ----------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~ 113 (726)
T TIGR01073 76 ----------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTD 113 (726)
T ss_pred ----------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 1135678887555433 332211 10 12234677665
No 447
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.79 E-value=0.88 Score=46.96 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=17.9
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..++.+.|.|++||||||.+-
T Consensus 23 ~~g~~~~i~G~nGsGKStll~ 43 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLR 43 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999997543
No 448
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.69 E-value=0.74 Score=50.99 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 306 Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
++..+..++.++|+|+||+|||+.+.+++...+.
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~ 39 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3445667899999999999999998888877664
No 449
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=84.68 E-value=4.1 Score=46.78 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=76.2
Q ss_pred HHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHH---c--cCCceEEEe--cchHHHHHHHHHHHHHHHhCCcccce
Q 000991 305 ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEA---A--RGAACSIIC--TQPRRISAMAVSERVAAERGEKLGES 377 (1197)
Q Consensus 305 ~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~---~--~g~~~~Iiv--tqPrR~LA~qva~rVa~e~g~~lg~~ 377 (1197)
-|-+.+.++-+++|.|+.|.||||.+.+.++....-. + ....+.+++ ..-.|+-+..--+.|...+|...++.
T Consensus 81 lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadv 160 (402)
T COG3598 81 LIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADV 160 (402)
T ss_pred hhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhh
Confidence 3445567788888899999999998887776543211 1 011223333 33455555555666777777665543
Q ss_pred eeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCC----CChhHHHHHHHHHcc--cCccceEEE
Q 000991 378 VGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG----MNEDFLLIVLKELLP--RRPELRLIL 451 (1197)
Q Consensus 378 VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~----~~~D~Ll~lLr~ll~--~r~~lklIl 451 (1197)
--..+..-+-.....+ +..| .|.+.......-...++||||=.=.-. ...+-...+++..-+ ..-++-||.
T Consensus 161 rn~dltd~~Gaa~~~d--~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy 237 (402)
T COG3598 161 RNMDLTDVSGAADESD--VLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIY 237 (402)
T ss_pred hheeccccccCCCccc--cccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEE
Confidence 2221100000111111 2233 555555444344567889999764210 111222223332211 224566888
Q ss_pred ecccC
Q 000991 452 MSATL 456 (1197)
Q Consensus 452 mSATl 456 (1197)
++-|.
T Consensus 238 ~hHts 242 (402)
T COG3598 238 IHHTS 242 (402)
T ss_pred Eeccc
Confidence 88775
No 450
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.64 E-value=1.1 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=19.9
Q ss_pred HHHcCCeEEEEecCCChHHHHHHHH
Q 000991 309 AISENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+.+++.++++||||||||+.+-.+
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li~~~ 53 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLIQNF 53 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHHHHH
T ss_pred HHHcCCcEEEECCCCCchhHHHHhh
Confidence 3567899999999999999655443
No 451
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=84.64 E-value=1.2 Score=60.38 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=51.1
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
...+++++|.|..|||||.+...-++..++..+.-..-.|+|+..|+.+|..+.+||...+.+
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999888888887532123457999999999999999999876644
No 452
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.62 E-value=1.1 Score=56.43 Aligned_cols=34 Identities=38% Similarity=0.496 Sum_probs=23.2
Q ss_pred HHHHHHHH-cCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 304 DALLKAIS-ENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 304 ~~Il~~I~-~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+.+.+++. .+..++|+|||||||||.. ..++..+
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 34444444 4678899999999999876 3444433
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.58 E-value=1.6 Score=54.01 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecc
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivtq 353 (1197)
+-.+..++|+|++|||||+.+.||+.+.+.. .+..|..+.+.
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~e 59 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFE 59 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEe
Confidence 3468899999999999999999999876542 13445544443
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=84.50 E-value=0.63 Score=45.60 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=13.8
Q ss_pred EEEEecCCChHHHHHH
Q 000991 316 VVVSGETGCGKTTQLP 331 (1197)
Q Consensus 316 vII~apTGSGKTtq~p 331 (1197)
|+|+|++||||||.+-
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6899999999997664
No 455
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=84.50 E-value=2.5 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCChHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~p 331 (1197)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~ 46 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQ 46 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578999999999999997543
No 456
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=84.41 E-value=1.7 Score=59.55 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEe
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKV 382 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~i 382 (1197)
|.+++. ..+.+++|+|.-|||||+.+..-++..+.. + ...-.|+|+.=|+.+|..+.+|+.+.+...+...-.. .
T Consensus 6 Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~-~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~-~ 80 (1232)
T TIGR02785 6 QWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILR-G-VDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS-K 80 (1232)
T ss_pred HHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhc-C-CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh-H
Confidence 444443 468899999999999999988888776542 2 1223577777999999999999988765433221110 0
Q ss_pred eeccccCCCceEEEEcchHHH-HHHhcCCCCCCc--cEEEEecCCCCCCChhHHHHHHHH
Q 000991 383 RLEGMKGRDTRLMFCTTGILL-RRLLVDRSLRGV--THVIVDEIHERGMNEDFLLIVLKE 439 (1197)
Q Consensus 383 r~e~~~~~~t~Ilv~Tpg~LL-r~L~~d~~L~~i--s~VIIDEaHeR~~~~D~Ll~lLr~ 439 (1197)
++......-...-|+|--.+. +.+......-++ .+=|.||....-+..+.+..++..
T Consensus 81 ~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~ 140 (1232)
T TIGR02785 81 HLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEE 140 (1232)
T ss_pred HHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHH
Confidence 011111111244577754444 444443322222 344578776322333333344433
No 457
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=84.37 E-value=1.8 Score=47.70 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..+..++|.|++|||||+.+.+++.+.+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 45688999999999999998888877654
No 458
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.23 E-value=4.9 Score=50.58 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=16.5
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
.+++++|||.|-||||.+-
T Consensus 326 kKilLL~GppGlGKTTLAH 344 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAH 344 (877)
T ss_pred cceEEeecCCCCChhHHHH
Confidence 5789999999999998663
No 459
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=84.22 E-value=2.1 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=17.0
Q ss_pred CCeEEEEecCCChHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
.+.+++.||+|||||+.+ ..+..
T Consensus 216 p~GILLyGPPGTGKT~LA-KAlA~ 238 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA-KAVAN 238 (512)
T ss_pred CcceEEECCCCCcHHHHH-HHHHH
Confidence 456899999999999644 34443
No 460
>PRK13764 ATPase; Provisional
Probab=84.18 E-value=0.99 Score=56.62 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=21.8
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
..+.+++|+|||||||||.+ ..+++.+.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 45788999999999999866 55665553
No 461
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.12 E-value=1 Score=52.40 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=29.2
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEec
Q 000991 306 LLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1197)
Q Consensus 306 Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivt 352 (1197)
+..+++.+++++|+|+|||||||..- .++..+ ....+|+.+
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~ln-all~~I-----p~~~rivtI 176 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLN-ALLDFI-----PPEERIVTI 176 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHH-HHHHhC-----CchhcEEEE
Confidence 67778899999999999999997654 333332 233456664
No 462
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=84.06 E-value=7.1 Score=38.56 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=24.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecch
Q 000991 316 VVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1197)
Q Consensus 316 vII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqP 354 (1197)
++++|..|+|||+....... .+. .++....++-+-|
T Consensus 2 i~~~GkgG~GKTt~a~~la~-~l~--~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR-YLA--EKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHH--HCCCcEEEEECCc
Confidence 68899999999987654433 222 2445566666667
No 463
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.93 E-value=4.4 Score=52.77 Aligned_cols=18 Identities=39% Similarity=0.542 Sum_probs=14.8
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
+++++||||+|||+.+-.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~ 503 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQ 503 (731)
T ss_pred eEEEECCCCccHHHHHHH
Confidence 578999999999965543
No 464
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=83.91 E-value=0.7 Score=57.92 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHH-HHHHHH
Q 000991 298 PSYKERDALLKAISEN--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVS-ERVAAE 369 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~--~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva-~rVa~e 369 (1197)
-..+++.+|++++... +.|++++++-+|||+.+.-++.- .+ ....+.+++++|+..+|.... .++.-.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~-~i---~~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGY-SI---DQDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceE-EE---EeCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 3456789999999764 57899999999999744433322 22 123467999999999998765 455443
No 465
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=83.91 E-value=0.85 Score=48.07 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=16.6
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
|+.++|.||+||||||.+-.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~ 20 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKA 20 (180)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56789999999999986543
No 466
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=83.88 E-value=3.4 Score=42.17 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=18.4
Q ss_pred HHcCCeEEEEecCCChHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~p 331 (1197)
+..++.+.|.|+.||||||.+-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578999999999999996553
No 467
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=83.87 E-value=2 Score=51.33 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=37.1
Q ss_pred ccEEEEecCCCCCCChhHHHHHHHHHcc---cCccceEEEecccC-CHHHHHhhhCC
Q 000991 415 VTHVIVDEIHERGMNEDFLLIVLKELLP---RRPELRLILMSATL-NAELFSSYFGG 467 (1197)
Q Consensus 415 is~VIIDEaHeR~~~~D~Ll~lLr~ll~---~r~~lklIlmSATl-~~~~f~~yf~~ 467 (1197)
.-+||||-+.++.-..+++...|.+... ...-.+||++|... ....+++.+.+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn 205 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPN 205 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCC
Confidence 4689999998877666777666655322 33456899999887 55667776654
No 468
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=83.72 E-value=1.8 Score=46.85 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
..++.+.|.||+|||||+...+++.+..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999988888877654
No 469
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=83.48 E-value=13 Score=46.55 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=75.4
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC-cccceeeeEeee-------
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE-KLGESVGYKVRL------- 384 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~-~lg~~VGy~ir~------- 384 (1197)
+..+-+.|.-|-|||.+.-+.|..... -+..+|.||.|.-+=...+.+-|.+-+.. ..-..+.|.|-.
T Consensus 275 r~~vsLtA~RGRGKSAALGlsiA~AVa----~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy~iI~s~np~fk 350 (1011)
T KOG2036|consen 275 RSTVSLTASRGRGKSAALGLSIAGAVA----FGYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDYDIIQSTNPDFK 350 (1011)
T ss_pred cceEEEEecCCCCchhhhhHHHHHHHh----cCcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcchhhhhhcChhhh
Confidence 556778999999999888877776542 24568999999998888888877554421 111122222211
Q ss_pred ------ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCH
Q 000991 385 ------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNA 458 (1197)
Q Consensus 385 ------e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~ 458 (1197)
+-.....--|-|-.|.- ...+....++|||||-. +-+-+++.++ .+-+|+|+.|+|.
T Consensus 351 kaivRInifr~hrQtIQYi~P~D-------~~kl~q~eLlVIDEAAA------IPLplvk~Li----gPylVfmaSTinG 413 (1011)
T KOG2036|consen 351 KAIVRINIFREHRQTIQYISPHD-------HQKLGQAELLVIDEAAA------IPLPLVKKLI----GPYLVFMASTING 413 (1011)
T ss_pred hhEEEEEEeccccceeEeeccch-------hhhccCCcEEEechhhc------CCHHHHHHhh----cceeEEEeecccc
Confidence 10000111122333311 11467789999999985 2244556655 3358999999863
No 470
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.22 E-value=5 Score=48.08 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEec
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICT 352 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivt 352 (1197)
.+.++|.|++|+|||.. .+.+-....+ .++..+++++
T Consensus 113 ~nplfi~G~~GlGKTHL-l~Aign~~~~--~~~~a~v~y~ 149 (408)
T COG0593 113 YNPLFIYGGVGLGKTHL-LQAIGNEALA--NGPNARVVYL 149 (408)
T ss_pred CCcEEEECCCCCCHHHH-HHHHHHHHHh--hCCCceEEec
Confidence 56889999999999942 2333333332 2344566664
No 471
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=82.84 E-value=3.4 Score=49.07 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=62.4
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccC-CceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARG-AACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g-~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
..+-+.+.|+.|+||| ++++.....-.. ...++ +--.-...+.+++.+..+..
T Consensus 61 ~~~GlYl~G~vG~GKT-----~Lmd~f~~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~~~~----------------- 114 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKT-----MLMDLFYDSLPIKRKRRV----HFHEFMLDVHSRLHQLRGQD----------------- 114 (362)
T ss_pred CCceEEEECCCCCchh-----HHHHHHHHhCCccccccc----cccHHHHHHHHHHHHHhCCC-----------------
Confidence 4678999999999999 455555443222 11222 11234455566665543100
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHH-HHHHHcccCccceEEEecccCCHHHH
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLI-VLKELLPRRPELRLILMSATLNAELF 461 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~-lLr~ll~~r~~lklIlmSATl~~~~f 461 (1197)
++ - ..+.+. ..++..+|.+||+|--++..-.++. ++..+.. .++-+|..|-+.+.+..
T Consensus 115 ~~-----l-~~va~~-----l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~--~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 115 DP-----L-PQVADE-----LAKESRLLCFDEFQVTDIADAMILKRLFEALFK--RGVVLVATSNRPPEDLY 173 (362)
T ss_pred cc-----H-HHHHHH-----HHhcCCEEEEeeeeccchhHHHHHHHHHHHHHH--CCCEEEecCCCChHHHc
Confidence 00 0 112222 3456779999999965554444433 4555543 46778888888766643
No 472
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.52 E-value=1.5 Score=54.03 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=20.8
Q ss_pred HHHHHHc-CCeEEEEecCCChHHHHHHHHHHHH
Q 000991 306 LLKAISE-NQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 306 Il~~I~~-~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
+..++.. +..++|+|||||||||..-. ++..
T Consensus 234 l~~~~~~~~GlilitGptGSGKTTtL~a-~L~~ 265 (486)
T TIGR02533 234 FERLIRRPHGIILVTGPTGSGKTTTLYA-ALSR 265 (486)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHH-HHhc
Confidence 3344443 45789999999999987643 3443
No 473
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=82.32 E-value=1.5 Score=47.83 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=24.6
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..+.+++|.|++|||||+.+.+++.+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999999988887654
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=82.23 E-value=1.1 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=18.7
Q ss_pred HcCCeEEEEecCCChHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
..++.++|+||+||||||.+-..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l 25 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKAL 25 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999765443
No 475
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=82.23 E-value=1.6 Score=47.28 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=23.8
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecch
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqP 354 (1197)
..+.+++|.|.||||||+.+--.+.. +..........++++-|
T Consensus 36 ~~~~h~li~G~tgsGKS~~l~~ll~~-l~~~~~p~~~~l~iiD~ 78 (205)
T PF01580_consen 36 KKNPHLLIAGATGSGKSTLLRTLLLS-LALTYSPDDVQLYIIDP 78 (205)
T ss_dssp GGS-SEEEE--TTSSHHHHHHHHHHH-HHTT--TTTEEEEEE-T
T ss_pred CCCceEEEEcCCCCCccHHHHHHHHH-HHHHhcCCccEEEEEcC
Confidence 45668999999999999766554444 33322334566666433
No 476
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.18 E-value=5.3 Score=46.94 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=32.9
Q ss_pred cChhhHHHHHHhhcCCCHHHHHHHHHHHHc-CCeEEEEecCCChHHHHH
Q 000991 283 ESPEGQKMLEFRRSLPSYKERDALLKAISE-NQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 283 ~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~-~~vvII~apTGSGKTtq~ 330 (1197)
.....+++++.---||++- -+....|+. =+-|++.||+|+|||+.+
T Consensus 216 gl~~AK~lL~EAVvlPi~m--Pe~F~GirrPWkgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 216 GLHEAKKLLKEAVVLPIWM--PEFFKGIRRPWKGVLMVGPPGTGKTLLA 262 (491)
T ss_pred chHHHHHHHHHHHhhhhhh--HHHHhhcccccceeeeeCCCCCcHHHHH
Confidence 4556677888777788864 445555544 467899999999999533
No 477
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.74 E-value=4.6 Score=53.28 Aligned_cols=56 Identities=27% Similarity=0.362 Sum_probs=31.2
Q ss_pred hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC----------ccceEEEecccCCHHHH
Q 000991 400 GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR----------PELRLILMSATLNAELF 461 (1197)
Q Consensus 400 g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r----------~~lklIlmSATl~~~~f 461 (1197)
|.|...+... .+++|++||++. .+.++...+++.+-.-+ -.--+++||..+..+.+
T Consensus 601 ~~l~~~~~~~----p~~VvllDeiek--a~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i 666 (821)
T CHL00095 601 GQLTEAVRKK----PYTVVLFDEIEK--AHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVI 666 (821)
T ss_pred chHHHHHHhC----CCeEEEECChhh--CCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHH
Confidence 3444555443 358999999996 56665555554432211 01136677776655433
No 478
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=81.73 E-value=2.1 Score=45.59 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=24.6
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchH
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPR 355 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPr 355 (1197)
+..++.||-+||||+.+..-+-.... .+.++++.-|.
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~-----~~~~v~~~kp~ 38 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEI-----AGKKVLVFKPA 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH-----TT-EEEEEEES
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHh-----CCCeEEEEEec
Confidence 46789999999999988776643322 22356665564
No 479
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.70 E-value=2.5 Score=44.39 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=18.0
Q ss_pred HHcCCeEEEEecCCChHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~ 330 (1197)
+..++.+.|.||.||||||.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl 45 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLL 45 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 357999999999999999744
No 480
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=81.63 E-value=2.5 Score=46.35 Aligned_cols=50 Identities=28% Similarity=0.346 Sum_probs=32.9
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
..+..++|.|++|+|||+.+.+++.+.+. ++..+..+-+. ....++.++.
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~---~g~~~~y~s~e---~~~~~l~~~~ 63 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLK---NGEKAMYISLE---EREERILGYA 63 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECC---CCHHHHHHHH
Confidence 35789999999999999988888876542 24444444432 2344555544
No 481
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.62 E-value=4.3 Score=53.57 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHH---c--CCeEEEEecCCChHHHHHH
Q 000991 298 PSYKERDALLKAIS---E--NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~---~--~~vvII~apTGSGKTtq~p 331 (1197)
|+..+..+|-..+. . ..++|+.||.|+|||+.+-
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 45444444444442 2 4688999999999997664
No 482
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=81.36 E-value=1.9 Score=50.21 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~IL 335 (1197)
..++..+..++.+++.|++|||||+.+-+...
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHHHHHH
Confidence 34677777889999999999999987765443
No 483
>PRK08233 hypothetical protein; Provisional
Probab=81.26 E-value=1.2 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=17.8
Q ss_pred CCeEEEEecCCChHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~I 334 (1197)
..++.|.|++||||||++-...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999885543
No 484
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=81.20 E-value=11 Score=41.28 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=17.9
Q ss_pred CeEEEEecCCChHHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~IL 335 (1197)
+.++|+||.|+||||..-...+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999976655443
No 485
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.12 E-value=1.3 Score=44.58 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=14.6
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
.|++.||+|+|||+.+-.
T Consensus 1 ~vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 479999999999965543
No 486
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=81.09 E-value=3.1 Score=53.69 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=64.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc-cccccccCCEE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM-AETSITINDVV 654 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni-aEtGIdIPdV~ 654 (1197)
.+..++|.+|+..-+...++.++... . ..++.+..+||+++..+++.++....+|...|||+|.. +...+.+.++.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~--~-~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLL--E-PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHH--h-hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 35689999999999998888877541 1 12477999999999999999999999999999999964 55567788888
Q ss_pred EEE
Q 000991 655 FVI 657 (1197)
Q Consensus 655 ~VI 657 (1197)
+||
T Consensus 386 lvV 388 (681)
T PRK10917 386 LVI 388 (681)
T ss_pred eEE
Confidence 876
No 487
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=81.08 E-value=7.6 Score=48.63 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~ 330 (1197)
+.+-.+...+..|+|.|+||||||+.+
T Consensus 210 ~~~~~~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 210 DQARVVARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred HHHHHHhCcCCCEEEECCCCccHHHHH
Confidence 344444456788999999999999655
No 488
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=81.05 E-value=2.5 Score=54.86 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=55.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia 644 (1197)
.+.++++.+||.--+..+++.|.............+. +||.|+..+++.+++++.+|..+|+|+|+-.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3478999999999999999888865322223344555 9999999999999999999999999999753
No 489
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.00 E-value=8.7 Score=44.90 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.2
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..-+-|++-||+|+|||+.+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCceEeeCCCCCcHHHHH
Confidence 45677999999999999543
No 490
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=81.00 E-value=7.3 Score=44.72 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=37.0
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
+...+...|.-..+.++|||++|. +..+..-.+||.+-.-.++..+|++|...
T Consensus 83 l~~~~~~~p~e~~~kv~ii~~ad~--mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 83 IKKQIWIHPYESPYKIYIIHEADR--MTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred HHHHHhhCccCCCceEEEEechhh--cCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 344444456667899999999997 66666777777766655566667776654
No 491
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=81.00 E-value=0.87 Score=53.11 Aligned_cols=21 Identities=48% Similarity=0.912 Sum_probs=18.3
Q ss_pred HHcCCeEEEEecCCChHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~ 330 (1197)
|.+|..+++.||+||||||..
T Consensus 26 i~~Gef~vllGPSGcGKSTlL 46 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLL 46 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999754
No 492
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.99 E-value=3.6 Score=52.70 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHc---CCeEEEEecCCChHHHHHHHHHH
Q 000991 300 YKERDALLKAISE---NQVVVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 300 ~~~q~~Il~~I~~---~~vvII~apTGSGKTtq~pq~IL 335 (1197)
+.-+..+++.+.. .+.++|++|-|+||||.+.+++.
T Consensus 21 ~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 21 YVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred ccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 4456677777764 57899999999999999999975
No 493
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=1.6 Score=53.72 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=14.9
Q ss_pred cCCeEEEEecCCChHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQ 329 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq 329 (1197)
--+-|++.||+|||||..
T Consensus 222 PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred CCCceeeeCCCCccHHHH
Confidence 356799999999999943
No 494
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=80.57 E-value=4.2 Score=52.77 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.3
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
.++++||||+|||+.+-.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~ 507 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999977653
No 495
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=80.48 E-value=1.3 Score=45.03 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=14.0
Q ss_pred EEEEecCCChHHHHHHH
Q 000991 316 VVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 316 vII~apTGSGKTtq~pq 332 (1197)
++|+|||||||||.+-.
T Consensus 2 i~i~GpsGsGKstl~~~ 18 (137)
T cd00071 2 IVLSGPSGVGKSTLLKR 18 (137)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999975543
No 496
>PRK05580 primosome assembly protein PriA; Validated
Probab=80.45 E-value=2.9 Score=53.80 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=59.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEE
Q 000991 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFV 656 (1197)
Q Consensus 577 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~V 656 (1197)
++.+||.+|+++-+..+.+.|+.. + +..+..+||+++..+|..++.....|..+|||+|.-+-. +.+.++.+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~--f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~li 262 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRAR--F----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLI 262 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH--h----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEE
Confidence 468999999999999999998864 2 235888999999999999988888999999999975432 455677665
Q ss_pred E
Q 000991 657 I 657 (1197)
Q Consensus 657 I 657 (1197)
|
T Consensus 263 V 263 (679)
T PRK05580 263 I 263 (679)
T ss_pred E
Confidence 5
No 497
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.44 E-value=0.95 Score=51.59 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.6
Q ss_pred cCCeEEEEecCCChHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~ 330 (1197)
...++++.||||||||+.+
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 4568999999999999543
No 498
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=80.35 E-value=1.9 Score=49.30 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=17.2
Q ss_pred HHHcCCeEEEEecCCChHHH
Q 000991 309 AISENQVVVVSGETGCGKTT 328 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTt 328 (1197)
.|..|+.+++.||+|+|||+
T Consensus 173 lIt~NRliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 173 LITWNRLILLHGPPGTGKTS 192 (423)
T ss_pred eeeeeeEEEEeCCCCCChhH
Confidence 35568999999999999994
No 499
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=80.30 E-value=2.6 Score=48.73 Aligned_cols=41 Identities=29% Similarity=0.483 Sum_probs=26.5
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecch
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqP 354 (1197)
....++.|+|++||||||.+-..+.. +. ..+..+.++-.-|
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~-~~--~~~~~v~~i~~D~ 72 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME-LR--RRGLKVAVIAVDP 72 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-HH--HCCCeEEEEecCC
Confidence 45789999999999999876654433 22 2344444544433
No 500
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=80.28 E-value=3.1 Score=48.65 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
+...+...+......++|||++|. ++......+++.+-...++..+|+.|-
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~--Ld~~a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAES--MNLQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhh--CCHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 445555556678899999999996 555555555554433323444555333
Done!