Query 000991
Match_columns 1197
No_of_seqs 685 out of 3588
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 05:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 7.7E-99 3E-103 954.9 54.5 638 282-1000 78-727 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-53 4E-58 541.2 31.3 536 287-894 19-626 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 1E-51 3.4E-56 522.4 35.1 502 298-885 25-596 (702)
4 2zj8_A DNA helicase, putative 100.0 3.8E-49 1.3E-53 500.1 29.1 463 284-831 9-539 (720)
5 3i4u_A ATP-dependent RNA helic 100.0 1E-46 3.6E-51 419.7 21.6 246 739-1000 2-248 (270)
6 3eiq_A Eukaryotic initiation f 100.0 7.4E-38 2.5E-42 369.0 17.4 324 289-712 53-391 (414)
7 3l9o_A ATP-dependent RNA helic 100.0 6.5E-37 2.2E-41 400.6 25.3 378 294-710 180-599 (1108)
8 2z83_A Helicase/nucleoside tri 100.0 4.9E-38 1.7E-42 378.0 12.8 294 307-708 15-313 (459)
9 3fht_A ATP-dependent RNA helic 100.0 2.3E-36 8E-41 355.6 26.5 320 298-709 47-380 (412)
10 3pey_A ATP-dependent RNA helic 100.0 1.6E-36 5.5E-41 354.2 24.3 320 297-709 26-357 (395)
11 4f92_B U5 small nuclear ribonu 100.0 1.2E-36 4.2E-41 410.8 25.7 450 287-814 916-1450(1724)
12 3o8b_A HCV NS3 protease/helica 100.0 3.2E-38 1.1E-42 388.6 9.3 304 290-711 209-517 (666)
13 4f92_B U5 small nuclear ribonu 100.0 1.4E-36 4.7E-41 410.3 24.4 449 302-824 83-630 (1724)
14 2jlq_A Serine protease subunit 100.0 2.6E-37 8.9E-42 370.9 15.0 293 305-706 11-309 (451)
15 2db3_A ATP-dependent RNA helic 100.0 6.5E-36 2.2E-40 357.1 26.1 311 299-708 79-407 (434)
16 2i4i_A ATP-dependent RNA helic 100.0 6.6E-36 2.3E-40 352.9 21.4 314 298-711 37-386 (417)
17 1hv8_A Putative ATP-dependent 100.0 1.9E-35 6.5E-40 341.7 23.7 311 298-712 28-349 (367)
18 1s2m_A Putative ATP-dependent 100.0 3.9E-35 1.3E-39 344.7 26.4 313 298-712 43-369 (400)
19 4a4z_A Antiviral helicase SKI2 100.0 4.4E-36 1.5E-40 389.6 19.0 380 297-706 38-490 (997)
20 2j0s_A ATP-dependent RNA helic 100.0 2.2E-35 7.5E-40 348.2 23.3 313 299-711 60-386 (410)
21 2ykg_A Probable ATP-dependent 100.0 2.3E-35 7.9E-40 372.2 22.2 417 297-736 12-554 (696)
22 1xti_A Probable ATP-dependent 100.0 1.2E-34 4.1E-39 339.0 26.1 314 298-710 30-359 (391)
23 3fmp_B ATP-dependent RNA helic 100.0 4.2E-36 1.4E-40 362.7 13.4 323 298-709 114-447 (479)
24 2xgj_A ATP-dependent RNA helic 100.0 1.7E-34 5.8E-39 374.8 28.9 372 296-708 84-499 (1010)
25 3i5x_A ATP-dependent RNA helic 100.0 1.6E-34 5.6E-39 355.7 20.0 326 298-711 94-452 (563)
26 2whx_A Serine protease/ntpase/ 100.0 2E-35 6.8E-40 366.1 11.7 302 294-706 170-476 (618)
27 3rc3_A ATP-dependent RNA helic 100.0 3.7E-34 1.3E-38 356.2 19.6 314 311-737 153-476 (677)
28 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-33 7.6E-38 343.5 25.9 395 296-711 5-511 (556)
29 1fuu_A Yeast initiation factor 100.0 2.6E-35 8.8E-40 344.6 7.8 319 298-712 43-370 (394)
30 2z0m_A 337AA long hypothetical 100.0 4.1E-34 1.4E-38 327.0 17.2 301 292-706 10-321 (337)
31 3fho_A ATP-dependent RNA helic 100.0 4.2E-35 1.4E-39 356.9 9.1 338 299-728 142-494 (508)
32 2v1x_A ATP-dependent DNA helic 100.0 7.9E-34 2.7E-38 350.6 20.1 309 300-712 46-378 (591)
33 3sqw_A ATP-dependent RNA helic 100.0 1.5E-33 5E-38 348.8 20.9 324 299-710 44-400 (579)
34 3tbk_A RIG-I helicase domain; 100.0 1.7E-33 5.9E-38 343.8 21.4 393 297-710 3-509 (555)
35 4gl2_A Interferon-induced heli 100.0 6.4E-34 2.2E-38 359.2 16.7 392 294-706 3-517 (699)
36 3oiy_A Reverse gyrase helicase 100.0 5.3E-33 1.8E-37 329.1 19.2 305 289-707 12-364 (414)
37 1oyw_A RECQ helicase, ATP-depe 100.0 3.3E-33 1.1E-37 341.1 16.9 305 300-711 27-346 (523)
38 1wp9_A ATP-dependent RNA helic 100.0 1.7E-32 5.8E-37 327.2 21.3 375 296-712 7-479 (494)
39 2v6i_A RNA helicase; membrane, 100.0 4.8E-33 1.6E-37 331.9 16.5 286 312-706 1-288 (431)
40 1yks_A Genome polyprotein [con 100.0 5.2E-33 1.8E-37 332.4 15.6 290 309-706 4-297 (440)
41 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-31 4.3E-36 343.2 26.5 395 296-710 246-751 (797)
42 2wv9_A Flavivirin protease NS2 100.0 2.5E-32 8.5E-37 340.6 17.1 289 310-706 238-531 (673)
43 4a2w_A RIG-I, retinoic acid in 100.0 1E-30 3.5E-35 339.1 20.8 396 295-711 245-752 (936)
44 1gm5_A RECG; helicase, replica 100.0 4.7E-30 1.6E-34 323.9 15.2 301 297-706 367-695 (780)
45 3llm_A ATP-dependent RNA helic 100.0 3.9E-29 1.3E-33 273.9 19.4 191 281-473 44-235 (235)
46 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-29 5.1E-34 331.1 15.2 271 295-663 75-388 (1104)
47 2fwr_A DNA repair protein RAD2 100.0 5.5E-29 1.9E-33 299.8 12.9 335 296-711 91-457 (472)
48 2eyq_A TRCF, transcription-rep 100.0 9.1E-28 3.1E-32 316.1 25.0 300 297-708 602-922 (1151)
49 2oca_A DAR protein, ATP-depend 100.0 3.9E-28 1.3E-32 295.3 18.7 324 297-706 112-453 (510)
50 1gku_B Reverse gyrase, TOP-RG; 100.0 1E-28 3.5E-33 323.2 12.7 264 301-662 59-352 (1054)
51 3h1t_A Type I site-specific re 99.9 6.4E-26 2.2E-30 281.0 21.1 339 297-698 177-545 (590)
52 1tf5_A Preprotein translocase 99.9 3.1E-25 1.1E-29 275.4 24.6 107 576-709 431-546 (844)
53 2fsf_A Preprotein translocase 99.9 1.5E-24 5E-29 268.7 21.9 107 576-709 440-584 (853)
54 1nkt_A Preprotein translocase 99.9 1.8E-23 6.2E-28 259.1 20.3 106 576-708 459-617 (922)
55 3dmq_A RNA polymerase-associat 99.9 5.8E-23 2E-27 267.0 19.3 125 562-710 488-617 (968)
56 3eaq_A Heat resistant RNA depe 99.9 1.2E-23 4E-28 227.1 10.6 176 564-764 18-211 (212)
57 3i32_A Heat resistant RNA depe 99.9 3.3E-23 1.1E-27 234.9 7.4 181 564-769 15-213 (300)
58 1z63_A Helicase of the SNF2/RA 99.8 6.1E-21 2.1E-25 231.4 18.0 112 576-711 340-456 (500)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 7.2E-21 2.5E-25 246.2 19.6 314 313-699 300-695 (1038)
60 3jux_A Protein translocase sub 99.8 2E-18 6.8E-23 210.0 22.1 107 576-709 473-588 (822)
61 1z3i_X Similar to RAD54-like; 99.8 7.3E-18 2.5E-22 210.7 27.8 112 575-711 414-531 (644)
62 1qde_A EIF4A, translation init 99.8 3.3E-19 1.1E-23 192.7 13.1 177 297-476 35-219 (224)
63 3ber_A Probable ATP-dependent 99.8 2.9E-19 9.9E-24 197.4 11.8 173 283-459 50-230 (249)
64 3iuy_A Probable ATP-dependent 99.8 5.8E-19 2E-23 191.6 13.0 161 298-459 42-211 (228)
65 3mwy_W Chromo domain-containin 99.8 9.2E-19 3.1E-23 224.1 16.5 112 576-712 571-688 (800)
66 1c4o_A DNA nucleotide excision 99.8 8.2E-18 2.8E-22 210.4 24.3 114 576-709 438-551 (664)
67 2pl3_A Probable ATP-dependent 99.8 5.8E-19 2E-23 192.6 11.2 164 294-459 43-215 (236)
68 3fmo_B ATP-dependent RNA helic 99.8 1.2E-18 4.1E-23 197.8 13.4 165 299-465 115-288 (300)
69 1q0u_A Bstdead; DEAD protein, 99.8 6.2E-19 2.1E-23 190.3 10.2 170 287-459 15-194 (219)
70 1vec_A ATP-dependent RNA helic 99.8 2E-18 6.8E-23 183.9 13.8 159 297-459 24-190 (206)
71 2oxc_A Probable ATP-dependent 99.8 6.9E-19 2.4E-23 191.6 10.1 165 298-467 46-222 (230)
72 3dkp_A Probable ATP-dependent 99.8 3.2E-18 1.1E-22 187.8 14.9 161 297-459 50-223 (245)
73 3bor_A Human initiation factor 99.7 2.1E-18 7E-23 188.8 11.5 155 299-459 53-217 (237)
74 2gxq_A Heat resistant RNA depe 99.7 2.4E-18 8.2E-23 183.3 10.6 180 289-469 14-200 (207)
75 3fe2_A Probable ATP-dependent 99.7 1.6E-18 5.5E-23 190.2 9.3 160 299-459 52-220 (242)
76 3ly5_A ATP-dependent RNA helic 99.7 3.5E-18 1.2E-22 190.2 11.6 161 297-459 75-245 (262)
77 1t6n_A Probable ATP-dependent 99.7 2.7E-18 9.1E-23 185.2 10.3 167 299-467 37-214 (220)
78 2hjv_A ATP-dependent RNA helic 99.7 7.5E-18 2.6E-22 173.8 12.2 123 564-711 22-145 (163)
79 2rb4_A ATP-dependent RNA helic 99.7 8.6E-18 3E-22 175.4 12.2 128 565-711 22-150 (175)
80 1fuk_A Eukaryotic initiation f 99.7 7.4E-18 2.5E-22 174.2 10.0 122 565-711 18-140 (165)
81 1wrb_A DJVLGB; RNA helicase, D 99.7 1.4E-17 4.8E-22 183.7 10.4 160 298-459 45-222 (253)
82 1t5i_A C_terminal domain of A 99.7 2.4E-17 8.2E-22 171.8 10.3 120 564-708 18-138 (172)
83 2jgn_A DBX, DDX3, ATP-dependen 99.7 3E-17 1E-21 173.2 10.2 120 566-710 34-155 (185)
84 2d7d_A Uvrabc system protein B 99.7 6.7E-17 2.3E-21 202.1 11.8 114 576-709 444-557 (661)
85 3b6e_A Interferon-induced heli 99.7 1.7E-16 5.7E-21 169.6 10.9 160 295-455 30-216 (216)
86 2p6n_A ATP-dependent RNA helic 99.7 1.2E-16 4.2E-21 169.4 9.6 118 565-708 43-161 (191)
87 2yjt_D ATP-dependent RNA helic 99.5 7.6E-18 2.6E-22 175.0 0.0 120 567-711 20-140 (170)
88 2vl7_A XPD; helicase, unknown 99.6 8.2E-15 2.8E-19 179.4 12.9 123 567-704 375-518 (540)
89 2ipc_A Preprotein translocase 99.5 2.7E-13 9.3E-18 168.0 21.8 120 297-425 79-213 (997)
90 1rif_A DAR protein, DNA helica 99.5 2.7E-14 9.3E-19 160.2 11.3 149 296-457 111-263 (282)
91 2fz4_A DNA repair protein RAD2 99.4 4.2E-13 1.4E-17 147.0 10.6 139 296-458 91-230 (237)
92 3crv_A XPD/RAD3 related DNA he 99.3 7.5E-11 2.6E-15 144.8 24.7 125 564-704 381-528 (551)
93 1z5z_A Helicase of the SNF2/RA 99.1 5.4E-11 1.8E-15 132.9 7.9 112 576-711 111-227 (271)
94 3adg_A F21M12.9 protein; HYL1, 99.0 4.7E-10 1.6E-14 99.7 8.4 68 1103-1170 1-72 (73)
95 4a15_A XPD helicase, ATP-depen 99.0 4.2E-09 1.4E-13 130.8 17.2 125 566-704 438-581 (620)
96 1uhz_A Staufen (RNA binding pr 98.9 2.5E-09 8.4E-14 98.7 8.2 69 1102-1171 3-75 (89)
97 2cpn_A TAR RNA-binding protein 98.9 6E-09 2.1E-13 96.1 9.5 69 1103-1172 14-86 (89)
98 3adl_A RISC-loading complex su 98.9 4.1E-09 1.4E-13 96.9 8.3 73 1098-1171 8-84 (88)
99 3adj_A F21M12.9 protein; HYL1, 98.8 3.8E-09 1.3E-13 94.6 7.2 67 1105-1171 4-74 (76)
100 1whn_A Hypothetical protein ri 98.8 9.8E-09 3.3E-13 100.7 9.6 75 1103-1177 24-100 (128)
101 1whq_A RNA helicase A; double- 98.8 3.9E-09 1.3E-13 99.2 6.4 70 1102-1172 3-76 (99)
102 2l2n_A Hyponastic leave 1; DSR 98.8 8.1E-09 2.8E-13 97.9 8.3 72 1101-1172 13-88 (103)
103 1ekz_A DSRBDIII, maternal effe 98.8 5.4E-09 1.9E-13 93.6 6.8 66 1104-1171 6-75 (76)
104 2b7t_A Double-stranded RNA-spe 98.8 1.1E-08 3.7E-13 90.9 7.5 65 1104-1171 3-71 (73)
105 2dix_A Interferon-inducible do 98.8 1.8E-08 6.1E-13 92.0 8.8 67 1103-1171 6-76 (84)
106 3llh_A RISC-loading complex su 98.7 1.6E-08 5.3E-13 93.6 7.2 68 1103-1172 12-83 (90)
107 1di2_A XLRBPA, double stranded 98.7 1.7E-08 5.7E-13 88.7 6.7 63 1107-1170 2-68 (69)
108 2b7v_A Double-stranded RNA-spe 98.7 1.7E-08 5.7E-13 89.2 6.1 64 1102-1171 1-68 (71)
109 1x47_A DGCR8 protein; structur 98.7 4E-08 1.4E-12 92.2 8.3 70 1103-1172 14-85 (98)
110 2khx_A Ribonuclease 3; drosha, 98.6 5.9E-08 2E-12 88.7 6.3 67 1106-1172 2-77 (85)
111 2dmy_A Spermatid perinuclear R 98.6 1.4E-07 4.7E-12 88.4 9.0 67 1102-1171 13-83 (97)
112 2l33_A Interleukin enhancer-bi 98.5 1.7E-07 6E-12 86.4 7.9 65 1105-1172 14-82 (91)
113 1uil_A Double-stranded RNA-bin 98.5 1.4E-07 4.9E-12 90.7 7.1 66 1105-1171 26-99 (113)
114 1x49_A Interferon-induced, dou 98.5 2.2E-07 7.7E-12 86.9 7.9 69 1103-1172 12-84 (97)
115 1x48_A Interferon-induced, dou 98.5 2E-07 6.8E-12 85.8 7.2 68 1103-1172 4-75 (88)
116 2ljh_A Double-stranded RNA-spe 98.3 6.8E-07 2.3E-11 85.8 6.8 67 1101-1173 33-103 (114)
117 3p1x_A Interleukin enhancer-bi 98.2 1.8E-06 6.2E-11 76.9 7.4 63 1107-1172 6-72 (75)
118 1qu6_A Protein kinase PKR; dsR 98.1 2.5E-06 8.5E-11 89.1 7.2 68 1103-1172 11-83 (179)
119 1t4n_A Ribonuclease III; DSRBD 98.1 1E-06 3.5E-11 81.3 3.5 65 1105-1171 6-75 (94)
120 1qu6_A Protein kinase PKR; dsR 98.1 2.8E-06 9.5E-11 88.8 6.1 70 1103-1173 102-174 (179)
121 1t4o_A Ribonuclease III; RNT1P 98.0 2.6E-06 8.9E-11 81.4 4.5 66 1104-1171 7-77 (117)
122 2yt4_A Protein DGCR8; DSRBD, R 98.0 1E-05 3.5E-10 87.8 8.1 69 1103-1172 20-91 (232)
123 1w36_D RECD, exodeoxyribonucle 97.9 2.2E-05 7.4E-10 97.3 11.2 144 302-455 153-298 (608)
124 2nug_A Ribonuclease III, RNAse 97.9 9.3E-06 3.2E-10 87.7 6.4 66 1105-1171 150-219 (221)
125 1o0w_A Ribonuclease III, RNAse 97.9 1.1E-05 3.8E-10 88.8 6.3 68 1105-1172 179-250 (252)
126 2yt4_A Protein DGCR8; DSRBD, R 97.8 1.2E-05 4E-10 87.4 5.8 66 1103-1172 128-199 (232)
127 2l3j_A Double-stranded RNA-spe 97.8 2.5E-05 8.7E-10 85.0 7.1 64 1103-1172 159-226 (236)
128 2a11_A Ribonuclease III, RNAse 97.7 5.8E-06 2E-10 90.5 0.0 69 1105-1173 162-233 (242)
129 2l3j_A Double-stranded RNA-spe 97.6 9.2E-05 3.2E-09 80.6 8.0 67 1103-1172 2-72 (236)
130 3n3w_A Ribonuclease III; nucle 97.6 1.1E-05 3.6E-10 88.7 0.0 66 1105-1171 177-247 (248)
131 3e1s_A Exodeoxyribonuclease V, 97.4 0.00027 9.1E-09 86.8 9.8 65 297-366 188-252 (574)
132 4b3f_X DNA-binding protein smu 97.4 0.00018 6.2E-09 89.8 8.0 63 301-368 193-255 (646)
133 3upu_A ATP-dependent DNA helic 97.3 0.00058 2E-08 81.6 10.7 128 300-453 27-162 (459)
134 2gk6_A Regulator of nonsense t 97.0 0.0011 3.9E-08 82.2 9.6 66 299-368 181-246 (624)
135 3rv0_A K. polysporus DCR1; RNA 96.9 0.00014 4.9E-09 83.0 0.0 75 1105-1180 254-329 (341)
136 2b8t_A Thymidine kinase; deoxy 96.8 0.0049 1.7E-07 66.4 10.8 114 311-454 10-124 (223)
137 2o0j_A Terminase, DNA packagin 96.6 0.019 6.4E-07 66.8 15.1 155 296-465 161-323 (385)
138 3lfu_A DNA helicase II; SF1 he 96.6 0.0042 1.4E-07 77.1 10.2 72 299-373 10-81 (647)
139 3cpe_A Terminase, DNA packagin 96.5 0.032 1.1E-06 68.7 17.1 155 296-465 161-323 (592)
140 3ec2_A DNA replication protein 96.4 0.0079 2.7E-07 61.8 8.9 22 312-333 37-58 (180)
141 2orw_A Thymidine kinase; TMTK, 96.3 0.0078 2.7E-07 62.7 8.3 39 312-355 2-40 (184)
142 3te6_A Regulatory protein SIR3 96.2 0.019 6.4E-07 65.1 11.1 44 413-457 131-174 (318)
143 3kl4_A SRP54, signal recogniti 96.2 0.013 4.6E-07 69.1 10.3 125 313-456 97-223 (433)
144 1xx6_A Thymidine kinase; NESG, 96.1 0.011 3.8E-07 62.0 8.1 39 312-355 7-45 (191)
145 1njg_A DNA polymerase III subu 95.6 0.031 1.1E-06 58.8 9.3 30 304-333 33-65 (250)
146 3vkw_A Replicase large subunit 95.6 0.02 6.9E-07 67.5 8.3 109 311-455 159-269 (446)
147 2chg_A Replication factor C sm 95.5 0.04 1.4E-06 57.3 9.7 30 304-333 27-58 (226)
148 2px0_A Flagellar biosynthesis 95.4 0.075 2.6E-06 59.6 12.1 128 312-464 104-232 (296)
149 2w58_A DNAI, primosome compone 95.4 0.05 1.7E-06 56.7 10.0 24 314-338 55-78 (202)
150 3c4b_A Endoribonuclease dicer; 95.4 0.014 4.9E-07 64.4 6.0 63 1106-1170 198-262 (265)
151 3dm5_A SRP54, signal recogniti 95.4 0.029 9.9E-07 66.3 8.8 124 313-456 100-224 (443)
152 3n70_A Transport activator; si 95.1 0.032 1.1E-06 55.3 7.0 22 310-331 21-42 (145)
153 3e2i_A Thymidine kinase; Zn-bi 95.1 0.019 6.4E-07 61.2 5.3 41 311-356 26-66 (219)
154 2xzl_A ATP-dependent helicase 95.0 0.028 9.7E-07 71.6 7.7 66 299-368 361-426 (802)
155 3bos_A Putative DNA replicatio 94.9 0.036 1.2E-06 58.8 7.2 22 312-333 51-72 (242)
156 1a5t_A Delta prime, HOLB; zinc 94.9 0.086 2.9E-06 60.0 10.6 52 402-455 96-147 (334)
157 2v1u_A Cell division control p 94.8 0.061 2.1E-06 61.5 9.0 23 312-334 43-65 (387)
158 1fnn_A CDC6P, cell division co 94.7 0.064 2.2E-06 61.5 9.2 42 750-791 328-373 (389)
159 2orv_A Thymidine kinase; TP4A 94.7 0.063 2.2E-06 57.8 8.1 40 312-356 18-57 (234)
160 2zpa_A Uncharacterized protein 94.6 0.033 1.1E-06 68.8 6.7 109 302-457 179-289 (671)
161 2db2_A KIAA0890 protein; DSRM 94.6 0.042 1.4E-06 51.1 5.7 79 1103-1182 15-102 (119)
162 3syl_A Protein CBBX; photosynt 94.5 0.079 2.7E-06 59.0 8.9 19 313-331 67-85 (309)
163 1jr3_A DNA polymerase III subu 94.5 0.069 2.4E-06 61.0 8.6 51 401-453 106-156 (373)
164 2wjy_A Regulator of nonsense t 94.4 0.042 1.4E-06 69.9 7.0 66 299-368 357-422 (800)
165 2qby_B CDC6 homolog 3, cell di 94.3 0.087 3E-06 60.4 9.1 42 750-791 316-359 (384)
166 2qgz_A Helicase loader, putati 94.2 0.038 1.3E-06 62.3 5.3 25 313-338 152-176 (308)
167 2j9r_A Thymidine kinase; TK1, 93.9 0.098 3.3E-06 55.7 7.6 40 312-356 27-66 (214)
168 1iqp_A RFCS; clamp loader, ext 93.9 0.13 4.6E-06 57.3 9.3 29 304-332 35-65 (327)
169 1vma_A Cell division protein F 93.9 0.2 6.7E-06 56.5 10.5 124 312-456 103-234 (306)
170 1l8q_A Chromosomal replication 93.7 0.33 1.1E-05 54.6 12.0 25 313-338 37-61 (324)
171 2kjq_A DNAA-related protein; s 93.6 0.063 2.2E-06 53.8 5.1 21 312-332 35-55 (149)
172 2qby_A CDC6 homolog 1, cell di 93.3 0.14 4.9E-06 58.3 8.2 21 313-333 45-65 (386)
173 2bjv_A PSP operon transcriptio 93.2 0.16 5.4E-06 55.4 8.2 20 311-330 27-46 (265)
174 3u61_B DNA polymerase accessor 93.1 0.3 1E-05 54.8 10.4 19 314-332 49-67 (324)
175 1sxj_D Activator 1 41 kDa subu 92.7 0.1 3.6E-06 59.0 5.9 29 304-332 47-77 (353)
176 1d2n_A N-ethylmaleimide-sensit 92.7 0.29 9.9E-06 53.5 9.3 20 313-332 64-83 (272)
177 1ojl_A Transcriptional regulat 92.6 0.2 6.9E-06 56.1 8.0 20 311-330 23-42 (304)
178 2qen_A Walker-type ATPase; unk 92.5 0.27 9.3E-06 55.1 9.0 31 304-334 22-52 (350)
179 3pfi_A Holliday junction ATP-d 92.5 0.5 1.7E-05 53.2 11.2 19 314-332 56-74 (338)
180 3b9p_A CG5977-PA, isoform A; A 92.4 0.28 9.5E-06 54.3 8.8 21 312-332 53-73 (297)
181 1ls1_A Signal recognition part 92.4 0.26 8.8E-06 55.1 8.5 126 312-456 97-222 (295)
182 2gno_A DNA polymerase III, gam 92.3 0.44 1.5E-05 53.5 10.2 50 402-453 70-119 (305)
183 1uaa_A REP helicase, protein ( 92.2 0.12 4E-06 64.6 5.9 70 300-372 4-73 (673)
184 1sxj_A Activator 1 95 kDa subu 92.2 0.27 9.1E-06 59.4 8.9 21 313-333 77-97 (516)
185 3vfd_A Spastin; ATPase, microt 92.0 0.25 8.4E-06 57.3 8.0 20 313-332 148-167 (389)
186 1sxj_B Activator 1 37 kDa subu 91.8 0.24 8.2E-06 55.0 7.4 29 305-333 32-62 (323)
187 1w4r_A Thymidine kinase; type 91.6 0.12 4.2E-06 54.1 4.2 39 312-355 19-57 (195)
188 3pvs_A Replication-associated 91.5 0.32 1.1E-05 57.6 8.3 25 307-331 42-68 (447)
189 2qp9_X Vacuolar protein sortin 91.5 0.23 7.8E-06 57.0 6.8 20 313-332 84-103 (355)
190 3u4q_A ATP-dependent helicase/ 91.4 0.1 3.5E-06 69.8 4.3 73 297-372 9-83 (1232)
191 1pjr_A PCRA; DNA repair, DNA r 91.4 0.19 6.4E-06 63.4 6.5 71 299-372 12-82 (724)
192 2qz4_A Paraplegin; AAA+, SPG7, 91.4 0.32 1.1E-05 52.4 7.6 21 312-332 38-58 (262)
193 1w5s_A Origin recognition comp 91.1 0.22 7.5E-06 57.5 6.3 23 751-773 349-371 (412)
194 1hqc_A RUVB; extended AAA-ATPa 91.1 0.49 1.7E-05 52.8 9.1 20 313-332 38-57 (324)
195 2z4s_A Chromosomal replication 90.9 0.48 1.6E-05 56.0 9.0 26 313-339 130-155 (440)
196 3eie_A Vacuolar protein sortin 90.5 0.23 7.7E-06 56.1 5.5 19 313-331 51-69 (322)
197 1sxj_E Activator 1 40 kDa subu 90.4 0.67 2.3E-05 52.4 9.5 43 412-456 132-174 (354)
198 2fna_A Conserved hypothetical 90.3 0.67 2.3E-05 52.0 9.2 21 314-334 31-51 (357)
199 3cf0_A Transitional endoplasmi 90.3 0.55 1.9E-05 52.3 8.4 21 311-331 47-67 (301)
200 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.26 9E-06 51.8 5.1 28 310-337 20-47 (235)
201 2v3c_C SRP54, signal recogniti 89.8 0.3 1E-05 57.6 5.9 121 314-456 100-222 (432)
202 3hgt_A HDA1 complex subunit 3; 89.5 1.4 5E-05 49.6 10.8 119 563-712 113-241 (328)
203 1xwi_A SKD1 protein; VPS4B, AA 89.2 0.34 1.2E-05 54.8 5.5 20 313-332 45-64 (322)
204 3k1j_A LON protease, ATP-depen 89.1 1.5 5.2E-05 53.9 11.7 28 304-331 51-78 (604)
205 2chq_A Replication factor C sm 89.0 0.22 7.6E-06 55.2 3.9 18 315-332 40-57 (319)
206 2r6a_A DNAB helicase, replicat 88.9 0.32 1.1E-05 57.7 5.3 36 304-339 194-229 (454)
207 2ffh_A Protein (FFH); SRP54, s 88.6 1.1 3.8E-05 52.6 9.5 47 312-361 97-143 (425)
208 3t15_A Ribulose bisphosphate c 88.5 0.6 2E-05 51.9 6.9 19 313-331 36-54 (293)
209 3pxi_A Negative regulator of g 88.3 1.3 4.5E-05 55.9 10.7 17 315-331 523-539 (758)
210 2zan_A Vacuolar protein sortin 88.2 0.55 1.9E-05 55.5 6.7 19 313-331 167-185 (444)
211 2xxa_A Signal recognition part 87.9 1.1 3.8E-05 52.7 9.0 55 314-371 101-156 (433)
212 3co5_A Putative two-component 87.6 0.35 1.2E-05 47.7 3.8 22 309-330 23-44 (143)
213 3e70_C DPA, signal recognition 87.4 1.2 3.9E-05 50.6 8.5 57 312-371 128-184 (328)
214 2q6t_A DNAB replication FORK h 87.0 0.41 1.4E-05 56.6 4.6 35 304-338 191-225 (444)
215 1j8m_F SRP54, signal recogniti 87.0 1.1 3.6E-05 50.2 7.7 125 313-456 98-224 (297)
216 4b4t_J 26S protease regulatory 86.5 0.76 2.6E-05 53.5 6.4 18 313-330 182-199 (405)
217 1kgd_A CASK, peripheral plasma 86.3 0.39 1.3E-05 49.2 3.4 21 312-332 4-24 (180)
218 3b85_A Phosphate starvation-in 86.1 0.51 1.7E-05 49.9 4.3 36 298-333 7-42 (208)
219 4b4t_M 26S protease regulatory 85.7 0.79 2.7E-05 53.9 6.0 18 313-330 215-232 (434)
220 4b4t_H 26S protease regulatory 85.7 0.87 3E-05 53.8 6.3 19 312-330 242-260 (467)
221 3cmu_A Protein RECA, recombina 85.6 0.45 1.5E-05 65.5 4.4 28 311-338 1425-1452(2050)
222 2gza_A Type IV secretion syste 85.1 0.61 2.1E-05 53.6 4.6 27 306-332 168-194 (361)
223 1g5t_A COB(I)alamin adenosyltr 85.1 0.77 2.6E-05 48.1 5.0 36 312-350 27-62 (196)
224 2dr3_A UPF0273 protein PH0284; 85.0 0.75 2.6E-05 48.9 5.1 29 310-338 20-48 (247)
225 2eyu_A Twitching motility prot 85.0 0.34 1.2E-05 53.1 2.4 23 310-332 22-44 (261)
226 2oap_1 GSPE-2, type II secreti 84.8 0.56 1.9E-05 56.5 4.3 27 305-331 252-278 (511)
227 2j41_A Guanylate kinase; GMP, 84.7 0.47 1.6E-05 49.1 3.2 23 310-332 3-25 (207)
228 1jbk_A CLPB protein; beta barr 84.7 0.88 3E-05 45.6 5.2 31 303-333 31-63 (195)
229 3tr0_A Guanylate kinase, GMP k 84.7 0.47 1.6E-05 49.1 3.2 22 311-332 5-26 (205)
230 3tau_A Guanylate kinase, GMP k 84.6 0.51 1.7E-05 49.5 3.4 21 312-332 7-27 (208)
231 2kou_A Dicer-like protein 4; A 84.3 0.91 3.1E-05 42.5 4.6 51 1120-1171 24-80 (102)
232 2zts_A Putative uncharacterize 84.0 1.4 4.8E-05 46.7 6.7 31 310-340 27-57 (251)
233 1zu4_A FTSY; GTPase, signal re 83.5 5.5 0.00019 44.8 11.5 46 311-359 103-148 (320)
234 3vaa_A Shikimate kinase, SK; s 83.5 0.61 2.1E-05 48.4 3.4 24 310-333 22-45 (199)
235 1lvg_A Guanylate kinase, GMP k 83.2 0.58 2E-05 48.8 3.1 21 312-332 3-23 (198)
236 2p65_A Hypothetical protein PF 83.0 0.73 2.5E-05 46.3 3.7 21 313-333 43-63 (187)
237 3lw7_A Adenylate kinase relate 82.9 0.5 1.7E-05 47.0 2.4 20 314-333 2-21 (179)
238 4b4t_L 26S protease subunit RP 82.8 1.3 4.4E-05 52.2 6.1 18 313-330 215-232 (437)
239 2pt7_A CAG-ALFA; ATPase, prote 82.7 0.71 2.4E-05 52.4 3.8 25 307-331 165-189 (330)
240 1zp6_A Hypothetical protein AT 82.7 0.47 1.6E-05 48.6 2.1 23 310-332 6-28 (191)
241 1xp8_A RECA protein, recombina 82.5 2 7E-05 49.3 7.6 29 310-338 71-99 (366)
242 1z6g_A Guanylate kinase; struc 82.5 0.67 2.3E-05 49.1 3.3 23 310-332 20-42 (218)
243 2yhs_A FTSY, cell division pro 82.4 4.8 0.00016 48.0 10.8 22 312-333 292-313 (503)
244 3ney_A 55 kDa erythrocyte memb 82.1 0.75 2.6E-05 48.3 3.4 22 311-332 17-38 (197)
245 2j37_W Signal recognition part 82.0 3 0.0001 50.1 9.0 124 313-456 101-225 (504)
246 4gp7_A Metallophosphoesterase; 82.0 0.38 1.3E-05 48.9 1.1 22 311-332 7-28 (171)
247 3a00_A Guanylate kinase, GMP k 81.8 0.72 2.5E-05 47.3 3.1 20 313-332 1-20 (186)
248 1kht_A Adenylate kinase; phosp 81.7 0.64 2.2E-05 47.3 2.7 20 313-332 3-22 (192)
249 1znw_A Guanylate kinase, GMP k 81.4 0.82 2.8E-05 47.8 3.4 23 309-331 16-38 (207)
250 4b4t_K 26S protease regulatory 81.4 1.6 5.4E-05 51.3 6.2 19 313-331 206-224 (428)
251 3umf_A Adenylate kinase; rossm 81.3 0.62 2.1E-05 49.7 2.5 25 310-334 26-50 (217)
252 3trf_A Shikimate kinase, SK; a 81.2 0.84 2.9E-05 46.4 3.4 21 313-333 5-25 (185)
253 4b4t_I 26S protease regulatory 81.1 1.5 5.1E-05 51.4 5.8 18 313-330 216-233 (437)
254 2ehv_A Hypothetical protein PH 81.0 1.3 4.4E-05 47.1 4.9 28 309-336 26-53 (251)
255 3a8t_A Adenylate isopentenyltr 80.9 0.72 2.5E-05 52.4 2.9 21 312-332 39-59 (339)
256 2qor_A Guanylate kinase; phosp 80.8 0.84 2.9E-05 47.6 3.3 23 310-332 9-31 (204)
257 1qvr_A CLPB protein; coiled co 80.8 1.6 5.6E-05 55.9 6.6 23 314-337 589-611 (854)
258 3jvv_A Twitching mobility prot 80.5 0.75 2.6E-05 52.8 2.9 21 311-331 121-141 (356)
259 1qhx_A CPT, protein (chloramph 80.4 0.76 2.6E-05 46.4 2.7 20 313-332 3-22 (178)
260 3exa_A TRNA delta(2)-isopenten 80.3 0.77 2.6E-05 51.7 2.9 20 313-332 3-22 (322)
261 2c95_A Adenylate kinase 1; tra 80.0 1.1 3.9E-05 45.7 3.9 24 310-333 6-29 (196)
262 2ewv_A Twitching motility prot 79.8 0.67 2.3E-05 53.5 2.2 23 310-332 133-155 (372)
263 3bh0_A DNAB-like replicative h 79.7 1.6 5.4E-05 49.1 5.3 35 304-338 59-93 (315)
264 2bwj_A Adenylate kinase 5; pho 79.6 1.3 4.5E-05 45.3 4.2 24 310-333 9-32 (199)
265 1kag_A SKI, shikimate kinase I 79.5 0.81 2.8E-05 45.9 2.5 21 312-332 3-23 (173)
266 1p9r_A General secretion pathw 79.4 1.3 4.6E-05 51.8 4.6 21 312-332 166-186 (418)
267 3lnc_A Guanylate kinase, GMP k 79.2 0.6 2.1E-05 49.7 1.5 23 310-332 24-46 (231)
268 3kb2_A SPBC2 prophage-derived 78.9 1.1 3.6E-05 44.8 3.2 18 315-332 3-20 (173)
269 2ze6_A Isopentenyl transferase 78.9 0.96 3.3E-05 49.1 3.1 19 315-333 3-21 (253)
270 1r6b_X CLPA protein; AAA+, N-t 78.9 2.2 7.5E-05 53.8 6.8 120 300-453 464-605 (758)
271 2qmh_A HPR kinase/phosphorylas 78.9 0.93 3.2E-05 47.7 2.7 22 312-333 33-54 (205)
272 1zd8_A GTP:AMP phosphotransfer 78.8 1.1 3.8E-05 47.4 3.5 23 311-333 5-27 (227)
273 2l8b_A Protein TRAI, DNA helic 78.7 3.9 0.00013 42.2 7.2 124 297-455 33-158 (189)
274 3sr0_A Adenylate kinase; phosp 78.1 1.1 3.7E-05 47.3 3.1 20 315-334 2-21 (206)
275 3cm0_A Adenylate kinase; ATP-b 78.1 0.9 3.1E-05 46.2 2.4 22 312-333 3-24 (186)
276 1ly1_A Polynucleotide kinase; 77.9 1.1 3.9E-05 44.9 3.1 20 314-333 3-22 (181)
277 3iij_A Coilin-interacting nucl 77.7 1.2 4.2E-05 45.0 3.3 21 312-332 10-30 (180)
278 3foz_A TRNA delta(2)-isopenten 77.5 1 3.6E-05 50.5 2.8 20 313-332 10-29 (316)
279 2cvh_A DNA repair and recombin 77.5 0.96 3.3E-05 47.1 2.5 26 310-335 17-42 (220)
280 4eun_A Thermoresistant glucoki 77.4 1.3 4.4E-05 45.9 3.4 22 311-332 27-48 (200)
281 4a74_A DNA repair and recombin 76.7 0.88 3E-05 47.7 1.9 26 310-335 22-47 (231)
282 2rhm_A Putative kinase; P-loop 76.5 1.3 4.4E-05 45.2 3.0 22 312-333 4-25 (193)
283 2v54_A DTMP kinase, thymidylat 76.5 1.4 4.9E-05 45.3 3.4 22 312-333 3-24 (204)
284 1y63_A LMAJ004144AAA protein; 76.4 1.4 4.7E-05 45.1 3.2 21 312-332 9-29 (184)
285 1zuh_A Shikimate kinase; alpha 76.3 1.3 4.5E-05 44.3 3.0 21 313-333 7-27 (168)
286 1s96_A Guanylate kinase, GMP k 75.9 1.5 5.1E-05 46.6 3.4 23 310-332 13-35 (219)
287 1ex7_A Guanylate kinase; subst 75.5 1.7 5.7E-05 45.2 3.6 18 314-331 2-19 (186)
288 1knq_A Gluconate kinase; ALFA/ 75.5 1.4 4.6E-05 44.4 2.9 21 312-332 7-27 (175)
289 1tev_A UMP-CMP kinase; ploop, 75.5 1.3 4.6E-05 44.9 2.9 20 313-332 3-22 (196)
290 3b9q_A Chloroplast SRP recepto 74.8 2.9 0.0001 46.7 5.6 23 311-333 98-120 (302)
291 1ofh_A ATP-dependent HSL prote 74.7 2.6 8.7E-05 46.3 5.1 20 312-331 49-68 (310)
292 2r44_A Uncharacterized protein 74.5 1.8 6.1E-05 48.5 3.8 29 303-331 36-64 (331)
293 1nks_A Adenylate kinase; therm 74.3 1.6 5.6E-05 44.2 3.2 19 315-333 3-21 (194)
294 3uie_A Adenylyl-sulfate kinase 74.2 1.5 5.3E-05 45.4 2.9 22 311-332 23-44 (200)
295 2qt1_A Nicotinamide riboside k 74.2 1.2 4.3E-05 46.2 2.2 23 310-332 18-40 (207)
296 3tif_A Uncharacterized ABC tra 74.2 1.1 3.6E-05 48.3 1.7 20 311-330 29-48 (235)
297 3fb4_A Adenylate kinase; psych 74.2 1.6 5.5E-05 45.6 3.1 19 315-333 2-20 (216)
298 3t61_A Gluconokinase; PSI-biol 74.1 1.6 5.5E-05 45.1 3.0 20 313-332 18-37 (202)
299 1n0w_A DNA repair protein RAD5 74.0 1.3 4.3E-05 47.0 2.3 27 310-336 21-47 (243)
300 3d3q_A TRNA delta(2)-isopenten 73.8 1.6 5.4E-05 49.7 3.1 19 314-332 8-26 (340)
301 1cke_A CK, MSSA, protein (cyti 73.8 1.8 6E-05 45.5 3.3 21 313-333 5-25 (227)
302 3c8u_A Fructokinase; YP_612366 73.8 1.5 5E-05 45.9 2.7 21 311-331 20-40 (208)
303 3crm_A TRNA delta(2)-isopenten 73.7 1.6 5.4E-05 49.3 3.1 18 314-331 6-23 (323)
304 3asz_A Uridine kinase; cytidin 73.7 1.6 5.6E-05 45.3 3.0 21 311-331 4-24 (211)
305 2plr_A DTMP kinase, probable t 73.6 1.6 5.5E-05 45.0 2.9 22 312-333 3-24 (213)
306 3hws_A ATP-dependent CLP prote 73.6 2.4 8.2E-05 48.3 4.6 20 312-331 50-69 (363)
307 1qf9_A UMP/CMP kinase, protein 73.5 1.8 6.1E-05 43.9 3.2 20 314-333 7-26 (194)
308 2bdt_A BH3686; alpha-beta prot 73.4 1.4 4.8E-05 45.0 2.3 21 313-333 2-22 (189)
309 1zak_A Adenylate kinase; ATP:A 73.3 1.7 5.9E-05 45.7 3.1 21 313-333 5-25 (222)
310 1aky_A Adenylate kinase; ATP:A 73.2 1.9 6.6E-05 45.2 3.4 21 313-333 4-24 (220)
311 2wwf_A Thymidilate kinase, put 73.2 1.9 6.4E-05 44.7 3.3 22 312-333 9-30 (212)
312 3dl0_A Adenylate kinase; phosp 73.1 1.7 6E-05 45.3 3.1 19 315-333 2-20 (216)
313 3tlx_A Adenylate kinase 2; str 73.0 1.8 6.1E-05 46.6 3.1 23 312-334 28-50 (243)
314 3cmu_A Protein RECA, recombina 72.9 2.1 7.1E-05 59.1 4.4 30 309-338 1077-1106(2050)
315 2jaq_A Deoxyguanosine kinase; 72.8 1.9 6.5E-05 44.2 3.2 19 315-333 2-20 (205)
316 3h4m_A Proteasome-activating n 72.6 2.7 9.1E-05 45.9 4.5 21 311-331 49-69 (285)
317 1sxj_C Activator 1 40 kDa subu 72.6 2.6 8.9E-05 47.5 4.6 29 305-333 36-66 (340)
318 2pez_A Bifunctional 3'-phospho 72.6 1.7 5.8E-05 44.0 2.7 21 312-332 4-24 (179)
319 1e9r_A Conjugal transfer prote 72.6 2.5 8.6E-05 49.4 4.6 43 312-359 52-94 (437)
320 1cr0_A DNA primase/helicase; R 72.2 1.6 5.4E-05 48.2 2.6 31 306-336 28-58 (296)
321 1nlf_A Regulatory protein REPA 72.2 1.6 5.4E-05 47.9 2.6 27 309-335 26-52 (279)
322 1e6c_A Shikimate kinase; phosp 72.1 1.9 6.3E-05 43.1 2.9 19 314-332 3-21 (173)
323 1nn5_A Similar to deoxythymidy 72.1 2.2 7.5E-05 44.2 3.5 22 312-333 8-29 (215)
324 2cbz_A Multidrug resistance-as 72.0 1.3 4.4E-05 47.7 1.7 21 311-331 29-49 (237)
325 2cdn_A Adenylate kinase; phosp 71.9 2.2 7.5E-05 44.1 3.4 21 313-333 20-40 (201)
326 1e4v_A Adenylate kinase; trans 71.5 2.1 7.1E-05 44.8 3.2 19 315-333 2-20 (214)
327 2iyv_A Shikimate kinase, SK; t 71.4 2 7E-05 43.5 3.0 20 314-333 3-22 (184)
328 1lv7_A FTSH; alpha/beta domain 71.3 2.7 9.2E-05 45.2 4.1 19 313-331 45-63 (257)
329 1ukz_A Uridylate kinase; trans 71.3 2.1 7.1E-05 44.2 3.1 21 313-333 15-35 (203)
330 1gtv_A TMK, thymidylate kinase 71.2 1.4 4.7E-05 45.8 1.7 19 315-333 2-20 (214)
331 2vli_A Antibiotic resistance p 71.2 1.8 6E-05 43.8 2.5 22 312-333 4-25 (183)
332 2z0h_A DTMP kinase, thymidylat 71.2 2 6.9E-05 43.8 2.9 19 315-333 2-20 (197)
333 1m7g_A Adenylylsulfate kinase; 71.1 1.9 6.4E-05 45.1 2.7 23 310-332 22-44 (211)
334 2v9p_A Replication protein E1; 71.0 2.1 7.1E-05 48.0 3.2 23 310-332 123-145 (305)
335 3eph_A TRNA isopentenyltransfe 70.8 1.9 6.5E-05 50.1 2.9 18 314-331 3-20 (409)
336 1rz3_A Hypothetical protein rb 70.8 3.1 0.00011 43.1 4.3 21 312-332 21-41 (201)
337 2yvu_A Probable adenylyl-sulfa 70.8 2.1 7.1E-05 43.6 2.9 22 312-333 12-33 (186)
338 3gfo_A Cobalt import ATP-bindi 70.4 1.4 4.8E-05 48.6 1.6 21 311-331 32-52 (275)
339 2pcj_A ABC transporter, lipopr 70.3 1.5 5.1E-05 46.8 1.7 20 311-330 28-47 (224)
340 2f1r_A Molybdopterin-guanine d 70.2 1.8 6.1E-05 44.2 2.2 19 314-332 3-21 (171)
341 2pbr_A DTMP kinase, thymidylat 70.2 2.2 7.4E-05 43.4 2.9 19 315-333 2-20 (195)
342 3nh6_A ATP-binding cassette SU 70.2 1.3 4.4E-05 49.7 1.2 21 311-331 78-98 (306)
343 3nbx_X ATPase RAVA; AAA+ ATPas 70.1 2.5 8.5E-05 50.7 3.8 27 304-330 32-58 (500)
344 2pt5_A Shikimate kinase, SK; a 70.1 2.2 7.5E-05 42.4 2.8 18 315-332 2-19 (168)
345 1via_A Shikimate kinase; struc 69.7 1.9 6.7E-05 43.4 2.4 19 315-333 6-24 (175)
346 3kta_A Chromosome segregation 69.5 2.8 9.7E-05 42.3 3.6 18 314-331 27-44 (182)
347 1gvn_B Zeta; postsegregational 69.5 2 7E-05 47.5 2.7 21 313-333 33-53 (287)
348 4fcw_A Chaperone protein CLPB; 69.4 2.4 8.1E-05 46.8 3.2 18 314-331 48-65 (311)
349 1ak2_A Adenylate kinase isoenz 69.4 2.6 8.9E-05 44.8 3.4 22 312-333 15-36 (233)
350 3be4_A Adenylate kinase; malar 69.3 2.7 9.4E-05 44.1 3.5 21 313-333 5-25 (217)
351 1sgw_A Putative ABC transporte 69.2 1.5 5.2E-05 46.5 1.5 21 311-331 33-53 (214)
352 2og2_A Putative signal recogni 69.2 4.5 0.00015 46.3 5.6 23 311-333 155-177 (359)
353 2bbw_A Adenylate kinase 4, AK4 69.1 2.6 9E-05 45.1 3.4 21 312-332 26-46 (246)
354 2ff7_A Alpha-hemolysin translo 69.1 1.6 5.4E-05 47.3 1.7 21 311-331 33-53 (247)
355 2pze_A Cystic fibrosis transme 69.1 1.6 5.5E-05 46.7 1.6 21 311-331 32-52 (229)
356 1tf7_A KAIC; homohexamer, hexa 68.9 3.4 0.00012 49.7 4.7 32 309-340 35-66 (525)
357 3tqc_A Pantothenate kinase; bi 68.7 3.2 0.00011 46.8 4.1 17 315-331 94-110 (321)
358 3cf2_A TER ATPase, transitiona 68.7 3.2 0.00011 52.6 4.4 19 313-331 238-256 (806)
359 2vp4_A Deoxynucleoside kinase; 68.6 2 6.7E-05 45.8 2.2 22 311-332 18-39 (230)
360 2ghi_A Transport protein; mult 68.6 1.7 5.7E-05 47.5 1.7 21 311-331 44-64 (260)
361 2if2_A Dephospho-COA kinase; a 68.6 2.2 7.7E-05 44.0 2.6 18 315-332 3-20 (204)
362 4ag6_A VIRB4 ATPase, type IV s 68.5 4.4 0.00015 46.7 5.3 41 312-357 34-74 (392)
363 1g6h_A High-affinity branched- 68.3 1.7 5.8E-05 47.4 1.7 20 311-330 31-50 (257)
364 2xb4_A Adenylate kinase; ATP-b 68.2 2.6 8.8E-05 44.6 3.1 19 315-333 2-20 (223)
365 1b0u_A Histidine permease; ABC 68.1 1.7 5.9E-05 47.5 1.7 20 311-330 30-49 (262)
366 3uk6_A RUVB-like 2; hexameric 68.1 4 0.00014 46.2 4.9 20 313-332 70-89 (368)
367 2ius_A DNA translocase FTSK; n 68.1 3.2 0.00011 49.8 4.1 28 311-338 165-192 (512)
368 1htw_A HI0065; nucleotide-bind 68.0 3.8 0.00013 41.2 4.1 21 311-331 31-51 (158)
369 4a1f_A DNAB helicase, replicat 68.0 6.6 0.00023 44.6 6.5 36 304-339 37-72 (338)
370 1ji0_A ABC transporter; ATP bi 67.9 1.7 5.9E-05 46.7 1.7 20 311-330 30-49 (240)
371 4g1u_C Hemin import ATP-bindin 67.9 1.7 5.9E-05 47.6 1.6 20 311-330 35-54 (266)
372 1mv5_A LMRA, multidrug resista 67.8 1.5 5.2E-05 47.3 1.2 21 311-331 26-46 (243)
373 2zr9_A Protein RECA, recombina 67.7 4.8 0.00017 45.9 5.4 29 310-338 58-86 (349)
374 4eaq_A DTMP kinase, thymidylat 67.6 2.6 8.8E-05 45.0 2.9 22 312-333 25-46 (229)
375 1uf9_A TT1252 protein; P-loop, 67.4 2.7 9.4E-05 43.0 3.0 20 313-332 8-27 (203)
376 1in4_A RUVB, holliday junction 67.3 3.6 0.00012 46.4 4.2 19 314-332 52-70 (334)
377 2i1q_A DNA repair and recombin 67.1 2.8 9.5E-05 47.0 3.2 28 310-337 95-122 (322)
378 3bgw_A DNAB-like replicative h 66.9 3.2 0.00011 49.0 3.7 36 304-339 188-223 (444)
379 1rj9_A FTSY, signal recognitio 66.9 3 0.0001 46.7 3.3 22 312-333 101-122 (304)
380 1vpl_A ABC transporter, ATP-bi 66.5 1.9 6.7E-05 46.9 1.7 21 311-331 39-59 (256)
381 1f2t_A RAD50 ABC-ATPase; DNA d 66.5 2.4 8E-05 42.1 2.2 19 313-331 23-41 (149)
382 2olj_A Amino acid ABC transpor 66.5 2 6.7E-05 47.1 1.7 21 311-331 48-68 (263)
383 1u94_A RECA protein, recombina 66.5 5.2 0.00018 45.8 5.3 29 310-338 60-88 (356)
384 3lda_A DNA repair protein RAD5 66.4 2.3 7.9E-05 49.5 2.4 28 310-337 175-202 (400)
385 2ixe_A Antigen peptide transpo 66.2 2 6.8E-05 47.2 1.7 21 311-331 43-63 (271)
386 2i3b_A HCR-ntpase, human cance 66.2 3.2 0.00011 43.0 3.2 20 313-332 1-20 (189)
387 3a4m_A L-seryl-tRNA(SEC) kinas 65.9 2.7 9.4E-05 45.6 2.7 20 313-332 4-23 (260)
388 4e22_A Cytidylate kinase; P-lo 65.8 3.3 0.00011 44.7 3.4 22 311-332 25-46 (252)
389 1ye8_A Protein THEP1, hypothet 65.7 3.4 0.00011 42.3 3.2 17 315-331 2-18 (178)
390 2yz2_A Putative ABC transporte 65.7 2.1 7.1E-05 46.9 1.7 20 311-330 31-50 (266)
391 2ihy_A ABC transporter, ATP-bi 65.5 2.1 7E-05 47.4 1.6 20 311-330 45-64 (279)
392 1vht_A Dephospho-COA kinase; s 65.4 2.7 9.2E-05 44.0 2.5 20 313-332 4-23 (218)
393 1jjv_A Dephospho-COA kinase; P 65.1 3.1 0.00011 43.0 2.9 19 315-333 4-22 (206)
394 2z43_A DNA repair and recombin 64.9 2.9 9.8E-05 47.1 2.7 27 310-336 104-130 (324)
395 3cmw_A Protein RECA, recombina 64.9 4.7 0.00016 55.0 5.1 36 312-350 1430-1465(1706)
396 2nq2_C Hypothetical ABC transp 64.8 2.1 7.3E-05 46.5 1.6 20 311-330 29-48 (253)
397 1gm5_A RECG; helicase, replica 64.8 4.9 0.00017 50.8 5.1 78 577-657 417-495 (780)
398 2jeo_A Uridine-cytidine kinase 64.7 2.9 9.9E-05 44.8 2.6 23 310-332 22-44 (245)
399 3nwj_A ATSK2; P loop, shikimat 64.6 3.6 0.00012 44.7 3.3 22 312-333 47-68 (250)
400 1xjc_A MOBB protein homolog; s 64.6 3.7 0.00013 41.9 3.2 39 314-355 5-43 (169)
401 2zu0_C Probable ATP-dependent 64.5 2.7 9.3E-05 46.0 2.4 21 311-331 44-64 (267)
402 2qi9_C Vitamin B12 import ATP- 64.4 2.2 7.6E-05 46.3 1.6 21 311-331 24-44 (249)
403 1ny5_A Transcriptional regulat 64.3 11 0.00039 43.3 7.7 20 311-330 158-177 (387)
404 2d2e_A SUFC protein; ABC-ATPas 64.1 2.8 9.5E-05 45.4 2.3 21 311-331 27-47 (250)
405 3d8b_A Fidgetin-like protein 1 64.0 4.8 0.00016 45.8 4.5 22 312-333 116-137 (357)
406 1ixz_A ATP-dependent metallopr 63.8 2.7 9.4E-05 45.0 2.2 18 314-331 50-67 (254)
407 3fvq_A Fe(3+) IONS import ATP- 63.5 2.4 8.4E-05 48.5 1.8 20 311-330 28-47 (359)
408 2bbs_A Cystic fibrosis transme 62.7 2.6 8.9E-05 46.9 1.8 21 311-331 62-82 (290)
409 1np6_A Molybdopterin-guanine d 62.6 4.2 0.00014 41.6 3.2 22 313-334 6-27 (174)
410 2iut_A DNA translocase FTSK; n 62.5 5.6 0.00019 48.3 4.8 28 311-338 212-239 (574)
411 2d7d_A Uvrabc system protein B 62.3 9.9 0.00034 47.1 7.2 59 306-372 24-83 (661)
412 3hr8_A Protein RECA; alpha and 62.3 6.3 0.00021 45.1 4.9 28 310-337 58-85 (356)
413 3io5_A Recombination and repai 62.3 5.8 0.0002 44.7 4.5 26 312-338 28-53 (333)
414 1odf_A YGR205W, hypothetical 3 62.1 3.7 0.00013 45.6 2.9 19 313-331 31-49 (290)
415 2r2a_A Uncharacterized protein 62.1 4.5 0.00015 42.3 3.4 23 315-337 7-29 (199)
416 2vhj_A Ntpase P4, P4; non- hyd 61.9 4 0.00014 46.1 3.1 26 311-336 121-146 (331)
417 2p5t_B PEZT; postsegregational 61.6 3 0.0001 45.1 2.0 22 312-333 31-52 (253)
418 1w36_B RECB, exodeoxyribonucle 61.2 6 0.00021 52.5 5.2 58 314-371 17-81 (1180)
419 4tmk_A Protein (thymidylate ki 60.9 5 0.00017 42.4 3.5 26 312-338 2-27 (213)
420 3rlf_A Maltose/maltodextrin im 60.9 2.8 9.6E-05 48.4 1.7 20 311-330 27-46 (381)
421 2grj_A Dephospho-COA kinase; T 60.7 4.2 0.00015 42.2 2.9 21 313-333 12-32 (192)
422 1v5w_A DMC1, meiotic recombina 60.6 3.4 0.00012 46.9 2.4 27 310-336 119-145 (343)
423 3auy_A DNA double-strand break 60.6 3.3 0.00011 47.5 2.3 19 313-331 25-43 (371)
424 4edh_A DTMP kinase, thymidylat 60.6 4.2 0.00015 42.9 2.9 22 312-333 5-26 (213)
425 1z47_A CYSA, putative ABC-tran 60.5 2.8 9.7E-05 47.9 1.7 20 311-330 39-58 (355)
426 3tmk_A Thymidylate kinase; pho 60.5 5 0.00017 42.5 3.5 22 312-333 4-25 (216)
427 1ltq_A Polynucleotide kinase; 60.3 4.3 0.00015 44.6 3.1 20 314-333 3-22 (301)
428 3aez_A Pantothenate kinase; tr 60.1 4.2 0.00014 45.7 2.9 22 310-331 87-108 (312)
429 3sfz_A APAF-1, apoptotic pepti 60.1 22 0.00075 46.8 10.3 34 303-336 133-170 (1249)
430 3lv8_A DTMP kinase, thymidylat 59.9 5.2 0.00018 43.0 3.5 22 312-333 26-47 (236)
431 3cf2_A TER ATPase, transitiona 59.8 7.2 0.00025 49.4 5.2 17 314-330 512-528 (806)
432 1tue_A Replication protein E1; 59.8 3.9 0.00013 43.2 2.4 18 314-331 59-76 (212)
433 1pzn_A RAD51, DNA repair and r 59.7 3.5 0.00012 47.0 2.3 27 310-336 128-154 (349)
434 3qf7_A RAD50; ABC-ATPase, ATPa 59.5 4.7 0.00016 46.2 3.2 18 315-332 25-42 (365)
435 2yyz_A Sugar ABC transporter, 59.4 3.1 0.00011 47.7 1.7 20 311-330 27-46 (359)
436 1p5z_B DCK, deoxycytidine kina 59.4 3.7 0.00013 44.5 2.2 22 311-332 22-43 (263)
437 2it1_A 362AA long hypothetical 59.3 3.1 0.00011 47.7 1.7 20 311-330 27-46 (362)
438 3v9p_A DTMP kinase, thymidylat 59.3 4.5 0.00015 43.3 2.8 23 311-333 23-45 (227)
439 1q57_A DNA primase/helicase; d 59.1 5 0.00017 48.0 3.6 58 304-366 233-290 (503)
440 3d31_A Sulfate/molybdate ABC t 58.9 2.9 9.8E-05 47.8 1.3 20 311-330 24-43 (348)
441 1iy2_A ATP-dependent metallopr 58.8 3.8 0.00013 44.7 2.2 17 315-331 75-91 (278)
442 2c9o_A RUVB-like 1; hexameric 58.8 5.9 0.0002 46.7 4.1 19 313-331 63-81 (456)
443 3gd7_A Fusion complex of cysti 58.7 4 0.00014 47.3 2.5 21 311-331 45-65 (390)
444 4akg_A Glutathione S-transfera 58.4 9.3 0.00032 54.6 6.5 38 294-331 901-941 (2695)
445 2pjz_A Hypothetical protein ST 58.2 3.3 0.00011 45.4 1.6 21 310-331 28-48 (263)
446 1um8_A ATP-dependent CLP prote 58.0 5.2 0.00018 45.7 3.3 20 312-331 71-90 (376)
447 2onk_A Molybdate/tungstate ABC 58.0 3.3 0.00011 44.6 1.5 20 311-331 23-42 (240)
448 3pxg_A Negative regulator of g 57.9 6.3 0.00022 46.7 4.1 27 305-331 191-219 (468)
449 3cr8_A Sulfate adenylyltranfer 57.8 3.8 0.00013 49.7 2.2 22 310-331 366-387 (552)
450 3oiy_A Reverse gyrase helicase 57.7 9.8 0.00034 43.7 5.7 79 575-657 62-144 (414)
451 1v43_A Sugar-binding transport 57.7 3.4 0.00012 47.6 1.7 20 311-330 35-54 (372)
452 1g29_1 MALK, maltose transport 57.7 3.4 0.00012 47.6 1.7 20 311-330 27-46 (372)
453 1g8p_A Magnesium-chelatase 38 57.3 5.2 0.00018 44.8 3.1 19 313-331 45-63 (350)
454 1uj2_A Uridine-cytidine kinase 57.2 5.1 0.00017 43.1 2.9 19 314-332 23-41 (252)
455 2f6r_A COA synthase, bifunctio 56.8 5.3 0.00018 44.0 3.0 21 314-334 76-96 (281)
456 1sq5_A Pantothenate kinase; P- 56.8 7.2 0.00025 43.4 4.1 21 311-331 78-98 (308)
457 3bs4_A Uncharacterized protein 56.6 10 0.00034 41.4 5.1 40 311-353 19-58 (260)
458 3ake_A Cytidylate kinase; CMP 56.4 5.5 0.00019 40.8 2.9 18 315-332 4-21 (208)
459 2p67_A LAO/AO transport system 56.4 14 0.00049 41.6 6.6 43 311-356 54-96 (341)
460 1svm_A Large T antigen; AAA+ f 56.3 5.4 0.00018 46.0 3.0 22 311-332 167-188 (377)
461 2x8a_A Nuclear valosin-contain 56.1 4.4 0.00015 44.4 2.2 17 315-331 46-62 (274)
462 2r8r_A Sensor protein; KDPD, P 56.0 11 0.00038 40.3 5.2 37 315-354 8-44 (228)
463 1pui_A ENGB, probable GTP-bind 55.9 3.7 0.00013 42.2 1.4 20 311-330 24-43 (210)
464 3r20_A Cytidylate kinase; stru 55.6 6.6 0.00022 42.2 3.4 21 312-332 8-28 (233)
465 2ocp_A DGK, deoxyguanosine kin 55.4 5.9 0.0002 42.1 3.0 20 313-332 2-21 (241)
466 3hjh_A Transcription-repair-co 55.3 16 0.00053 43.6 6.9 54 312-373 13-66 (483)
467 4a82_A Cystic fibrosis transme 55.3 3.9 0.00013 49.9 1.7 20 311-330 365-384 (578)
468 1oxx_K GLCV, glucose, ABC tran 55.3 3 0.0001 47.8 0.6 20 311-330 29-48 (353)
469 3tui_C Methionine import ATP-b 54.8 4.1 0.00014 46.8 1.7 20 311-330 52-71 (366)
470 1tq4_A IIGP1, interferon-induc 54.1 11 0.00036 44.1 5.1 30 302-331 58-87 (413)
471 2r62_A Cell division protease 53.6 3.6 0.00012 44.4 1.0 20 313-332 44-63 (268)
472 3qks_A DNA double-strand break 53.5 7.3 0.00025 40.6 3.2 19 313-331 23-41 (203)
473 1q3t_A Cytidylate kinase; nucl 53.4 7.5 0.00026 41.2 3.4 21 312-332 15-35 (236)
474 1vec_A ATP-dependent RNA helic 53.4 27 0.00091 35.5 7.6 76 576-657 70-151 (206)
475 3b60_A Lipid A export ATP-bind 53.3 4.5 0.00015 49.4 1.8 21 311-331 367-387 (582)
476 3qf4_A ABC transporter, ATP-bi 52.9 4.4 0.00015 49.6 1.7 21 311-331 367-387 (587)
477 3qf4_B Uncharacterized ABC tra 52.7 4.2 0.00014 49.9 1.4 21 311-331 379-399 (598)
478 1tf7_A KAIC; homohexamer, hexa 52.4 11 0.00039 45.2 5.2 27 310-336 278-304 (525)
479 3qkt_A DNA double-strand break 52.2 5.4 0.00019 45.0 2.2 19 313-331 23-41 (339)
480 3b5x_A Lipid A export ATP-bind 51.9 5.9 0.0002 48.3 2.6 21 311-331 367-387 (582)
481 3pxi_A Negative regulator of g 51.8 7.3 0.00025 49.1 3.4 28 304-331 190-219 (758)
482 1t6n_A Probable ATP-dependent 51.8 19 0.00063 37.3 6.1 76 577-657 82-163 (220)
483 3sop_A Neuronal-specific septi 51.7 6.2 0.00021 43.2 2.4 18 315-332 4-21 (270)
484 1c9k_A COBU, adenosylcobinamid 51.5 7.8 0.00027 39.9 3.0 19 316-334 2-20 (180)
485 3m6a_A ATP-dependent protease 51.5 6.1 0.00021 47.8 2.6 20 312-331 107-126 (543)
486 2ce2_X GTPase HRAS; signaling 51.2 8.5 0.00029 37.1 3.2 19 315-333 5-23 (166)
487 1g41_A Heat shock protein HSLU 51.2 8.2 0.00028 45.4 3.5 19 313-331 50-68 (444)
488 2dyk_A GTP-binding protein; GT 51.0 8.3 0.00028 37.2 3.1 20 315-334 3-22 (161)
489 1a7j_A Phosphoribulokinase; tr 51.0 5.7 0.00019 44.0 2.0 21 313-333 5-25 (290)
490 3vkg_A Dynein heavy chain, cyt 50.7 10 0.00036 54.7 5.0 67 293-361 883-952 (3245)
491 2eyq_A TRCF, transcription-rep 50.4 19 0.00065 47.6 7.2 79 576-657 651-730 (1151)
492 3zvl_A Bifunctional polynucleo 50.4 7.9 0.00027 45.1 3.2 20 313-332 258-277 (416)
493 4hlc_A DTMP kinase, thymidylat 50.3 7.8 0.00027 40.6 2.8 20 313-332 2-21 (205)
494 2npi_A Protein CLP1; CLP1-PCF1 50.1 7.1 0.00024 46.2 2.8 22 310-331 135-156 (460)
495 3tqf_A HPR(Ser) kinase; transf 50.0 8.5 0.00029 39.5 2.9 23 312-334 15-37 (181)
496 2h92_A Cytidylate kinase; ross 49.8 8.5 0.00029 40.0 3.1 20 313-332 3-22 (219)
497 3ld9_A DTMP kinase, thymidylat 49.6 8.2 0.00028 41.1 2.9 22 312-333 20-41 (223)
498 1nij_A Hypothetical protein YJ 49.5 6.7 0.00023 43.9 2.4 19 314-332 5-23 (318)
499 1lw7_A Transcriptional regulat 49.0 7.6 0.00026 44.3 2.7 23 310-332 165-189 (365)
500 3hjn_A DTMP kinase, thymidylat 48.8 8.3 0.00028 40.0 2.8 22 316-338 3-24 (197)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=7.7e-99 Score=954.94 Aligned_cols=638 Identities=35% Similarity=0.588 Sum_probs=563.1
Q ss_pred hcChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHH
Q 000991 282 QESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMA 361 (1197)
Q Consensus 282 ~~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~q 361 (1197)
..++.+.++++.|..+|++.|+++|+.++..+++++|+|||||||||++|+++++.....+ ....|+|++|+|++|.|
T Consensus 78 ~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~--~g~~ilvl~P~r~La~q 155 (773)
T 2xau_A 78 EFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL--ENTQVACTQPRRVAAMS 155 (773)
T ss_dssp BCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG--GTCEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC--CCceEEecCchHHHHHH
Confidence 3466788889999999999999999999999999999999999999999999876543222 24578899999999999
Q ss_pred HHHHHHHHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 362 VSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 362 va~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
++++++.+++..++..+||.++++.....+++|+|+|||++++.+..+..+.++++|||||+|+|+++.|+++.+++.+.
T Consensus 156 ~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 156 VAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp HHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 99999999999999999999998888778899999999999999998889999999999999999999999999999998
Q ss_pred ccCccceEEEecccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 442 PRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 442 ~~r~~lklIlmSATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
..+++.++|+||||++.+.|++||++++++.++|+.+||+.+|.... ..++
T Consensus 236 ~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~-------------~~~~---------------- 286 (773)
T 2xau_A 236 KRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF-------------QRDY---------------- 286 (773)
T ss_dssp HHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSC-------------CSCH----------------
T ss_pred HhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCC-------------chhH----------------
Confidence 88899999999999999999999999999999999999999886420 0000
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~ 601 (1197)
++ .....+..++.....+++||||+++++|+.+++.|....
T Consensus 287 ---------~~------------------------------~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~ 327 (773)
T 2xau_A 287 ---------LD------------------------------SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG 327 (773)
T ss_dssp ---------HH------------------------------HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred ---------HH------------------------------HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 00 011123344455568999999999999999999997410
Q ss_pred --C--CCCCCceEEEeccCCCCHHHHHHhcCCCC-----CCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCC
Q 000991 602 --L--LGDPSRVLLLACHGSMASSEQRLIFDKPE-----DGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672 (1197)
Q Consensus 602 --~--~~~~~~~~I~~lHs~L~~~er~~v~~~f~-----~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~ 672 (1197)
. .....++.+.++||+|+.++|..+++.|+ +|.++||||||+||+|||||+|++|||+|+++.+.||+..+
T Consensus 328 ~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g 407 (773)
T 2xau_A 328 DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIR 407 (773)
T ss_dssp HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTT
T ss_pred HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccC
Confidence 0 00113678999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCCccccccCHhhHHhhhcccCCCCCCeEEEeccccch-hhhhhcCCccccccchhhhhHHhhhcCCCCHHHHHhhhcCC
Q 000991 673 TPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVY-DAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQP 751 (1197)
Q Consensus 673 ~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~-~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~fL~~~ldp 751 (1197)
+..|...|+|+++|.||+|||||.++|.||+||++..+ +.+.++..|||++.+|.+++|+++.++++++..| .+++|
T Consensus 408 ~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f--~~~~~ 485 (773)
T 2xau_A 408 VESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDP 485 (773)
T ss_dssp EEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGC--CCSSC
T ss_pred ccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhc--cccCC
Confidence 99999999999999999999999999999999999998 5699999999999999999999999999999988 89999
Q ss_pred CChhhHHHHHHHHHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCCCCcccCcchHHHH
Q 000991 752 PEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLA 831 (1197)
Q Consensus 752 P~~~~v~~Al~~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~~pF~~p~~~~~~a 831 (1197)
|+.+++..|++.|..+||||.+|+||++|+.|+.||+||++||||+.|+.++|++++++|||+|++++||+.|.++++++
T Consensus 486 p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~ 565 (773)
T 2xau_A 486 PAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRA 565 (773)
T ss_dssp CCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCChhhHHHHHHHHHHHHHHhhcccc-hhhHhhhccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 000991 832 ESAKAQFSARDYSDHLALVRAYDGWKDAERHQSG-YEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWS 910 (1197)
Q Consensus 832 ~~~r~~f~~~~~SDhl~~l~af~~w~~~~~~~~~-~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl~~~~~~~~n~~s 910 (1197)
+.+|+.|+ +..|||++++|+|++|......+.. .+||++||||+.+|+++.++|.||.++|.+.|+...... .+ ..
T Consensus 566 ~~~~~~f~-~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~-~~-~~ 642 (773)
T 2xau_A 566 DDAKNIFA-HPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTD-YE-SP 642 (773)
T ss_dssp HHHHHTTC-CTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-TT-ST
T ss_pred HHHHHhcc-CCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCC-CC-ch
Confidence 99999998 6779999999999999876532233 689999999999999999999999999999998543211 11 22
Q ss_pred CCHHHHHHHHHhccCCCccccccccccceeEeecCC-EEEEecCCcCCCCCCCCCCEEEEEeeeeccccccccCCCCChH
Q 000991 911 HDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDG-QVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDS 989 (1197)
Q Consensus 911 ~~~~lira~L~aGlypnva~~~~~~~~~~~~t~~~~-~v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk~yir~~T~V~p~ 989 (1197)
.++..|++|||+|||||||+.... ...|.++.++ .|+|||+|++.. .++||||+|++.|++.|||++|+|+|.
T Consensus 643 ~~~~~i~~~l~~g~~~~~a~~~~~--~~~y~~~~~~~~~~ihp~s~l~~----~~~~~v~~e~~~t~~~~~~~~~~i~~~ 716 (773)
T 2xau_A 643 KYFDNIRKALASGFFMQVAKKRSG--AKGYITVKDNQDVLIHPSTVLGH----DAEWVIYNEFVLTSKNYIRTVTSVRPE 716 (773)
T ss_dssp THHHHHHHHHHHHHTTSEEEECCC----CEEETTTCCEEEECTTCCCCT----TCSEEEEEEEEESSSEEEEEEEECCHH
T ss_pred hhHHHHHHHHHHhChHhheeeccC--CCcceEeeCCCEEEECCCcccCC----CCCEEEEEEeeccchhheeecccCCHH
Confidence 456789999999999999987532 1238887655 599999999953 268999999999999999999999999
Q ss_pred HHHHhhCcccc
Q 000991 990 VLLLFGGNISR 1000 (1197)
Q Consensus 990 ~LlLFgg~~~~ 1000 (1197)
||..+++....
T Consensus 717 ~l~~~~~~~~~ 727 (773)
T 2xau_A 717 WLIEIAPAYYD 727 (773)
T ss_dssp HHHHHCTTTSC
T ss_pred HHHHHHHHhee
Confidence 99999987653
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-53 Score=541.24 Aligned_cols=536 Identities=16% Similarity=0.125 Sum_probs=371.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHH-HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHH
Q 000991 287 GQKMLEFRRSLPSYKERDALLKA-ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1197)
Q Consensus 287 ~~~~~~~R~~LPi~~~q~~Il~~-I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~r 365 (1197)
..+.+..+.--..+.+|.+++.. +.++++++|+||||||||+++++++++.+... ..+++|++|+|+||.|++++
T Consensus 19 ~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i~P~r~La~q~~~~ 94 (715)
T 2va8_A 19 VIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYVTPLRALTNEKYLT 94 (715)
T ss_dssp HHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----CCeEEEEeCcHHHHHHHHHH
Confidence 33444433333556777777777 78899999999999999999999999887532 35899999999999999999
Q ss_pred HH--HHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcc
Q 000991 366 VA--AERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP 442 (1197)
Q Consensus 366 Va--~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~ 442 (1197)
+. .++|..++..+|+..+.+... .+++|+|||||+|.+.+..++ +++++++|||||+|+.+ .+.....++.++.
T Consensus 95 ~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~--~~~~~~~l~~i~~ 171 (715)
T 2va8_A 95 FKDWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN--DPERGPVVESVTI 171 (715)
T ss_dssp HGGGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG--CTTTHHHHHHHHH
T ss_pred HHHhhcCCCEEEEEeCCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC--CcccchHHHHHHH
Confidence 93 234667777778766665443 378999999999999998877 48999999999999853 1112223333333
Q ss_pred cCccceEEEecccC-CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 443 RRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 443 ~r~~lklIlmSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
+.+++|+|+||||+ |.+.|++||+ ++.+..+++.+|+...+.........+. + .+
T Consensus 172 ~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~------~-~~---------------- 227 (715)
T 2va8_A 172 RAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYN------V-IF---------------- 227 (715)
T ss_dssp HHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEE------E-EE----------------
T ss_pred hcccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCccccee------e-ec----------------
Confidence 33489999999999 5999999996 6778888999998876542100000000 0 00
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~ 601 (1197)
.......+. ..+.+..++.+++. .++++||||+++++++.+++.|....
T Consensus 228 ----------------------~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~ 276 (715)
T 2va8_A 228 ----------------------KDNTTKKVH-------GDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYM 276 (715)
T ss_dssp ----------------------TTSCEEEEE-------SSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred ----------------------Ccchhhhcc-------cchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 000000000 00112233334333 46899999999999999999998642
Q ss_pred CC---CC---------------C-----------CceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCC
Q 000991 602 LL---GD---------------P-----------SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIND 652 (1197)
Q Consensus 602 ~~---~~---------------~-----------~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPd 652 (1197)
.. .. . ....+.+|||+|+.++|+.+++.|++|.++|||||+++|+|||+|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~ 356 (715)
T 2va8_A 277 NFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPA 356 (715)
T ss_dssp TSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCB
T ss_pred hhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCc
Confidence 11 00 0 0124889999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccc-hhhhhh---cCCccccccc
Q 000991 653 VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV-YDAFAD---YQLPELLRTP 725 (1197)
Q Consensus 653 V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~-~~~l~~---~~~PEIlr~~ 725 (1197)
+++||++ ...||+..+.. ..|+|.++|.||+|||||.+ +|.||++|+... +..+.+ ...||+++.+
T Consensus 357 ~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~ 429 (715)
T 2va8_A 357 RTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESK 429 (715)
T ss_dssp SEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCS
T ss_pred eEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceec
Confidence 9999995 34577544332 57899999999999999998 899999998765 333322 4679999998
Q ss_pred hhh------hhHHhhhcCC----CCHHHHHhhhcC--CCChhhHHHHHHHHHHhcccccCC---ccccccccccccCCch
Q 000991 726 LQS------LCLQIKSLQL----GSISEFLSRALQ--PPEPLSVKNAIEYLQIIGALDENE---NLTVLGRNLSMLPVEP 790 (1197)
Q Consensus 726 L~~------l~L~lk~l~~----~~i~~fL~~~ld--pP~~~~v~~Al~~L~~lGaLd~~~---~lT~LG~~ls~lPvdp 790 (1197)
|.+ .+|.+...+. .++.+|+...+- +|+...+..|++.|...|+|+.++ .+|++|+.++.+|++|
T Consensus 430 l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~ 509 (715)
T 2va8_A 430 LGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINP 509 (715)
T ss_dssp CCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCH
T ss_pred CCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCH
Confidence 876 4566666653 356667653332 455667999999999999999774 7999999999999999
Q ss_pred hhHHHHHHhhhc---CCcchHHHHHHhhc-CCCCcccCcchHHHHHHHHh---h-cccCC-----hh---hHHHHHHHHH
Q 000991 791 KLGKMLILGAIF---NCLDPVMTVVAGLS-VRDPFLMPFDKKDLAESAKA---Q-FSARD-----YS---DHLALVRAYD 854 (1197)
Q Consensus 791 ~lgK~ll~g~~~---~Cl~~~ltIaA~ls-~~~pF~~p~~~~~~a~~~r~---~-f~~~~-----~S---Dhl~~l~af~ 854 (1197)
++|+|++.+... .|..+++.|+|+.+ +.++|+.|.+.....+.... . +.... .. .|+-..-+.+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~ 589 (715)
T 2va8_A 510 FTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMK 589 (715)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHH
Confidence 999999999888 79999999888766 56778776554433322110 0 11001 11 2333344456
Q ss_pred HHHHHhhcccchhhHhhhccchhhHHHHHHHHHHHHHHHH
Q 000991 855 GWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLK 894 (1197)
Q Consensus 855 ~w~~~~~~~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~ 894 (1197)
.|... .....+|.++.+....++.+.+.-..|...+.
T Consensus 590 ~~~~~---~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~ 626 (715)
T 2va8_A 590 DWMDE---VDEDTILSKYNIGSGDLRNMVETMDWLTYSAY 626 (715)
T ss_dssp HHHTT---CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcC---CCHHHHHHHHCCChhhHHHHHHHHHHHHHHHH
Confidence 66543 22346888888877777766555444444443
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1e-51 Score=522.35 Aligned_cols=502 Identities=18% Similarity=0.194 Sum_probs=369.1
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH--HhCCccc
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA--ERGEKLG 375 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~--e~g~~lg 375 (1197)
..+.+|.++++.+.++++++|+||||||||+++++++++.+.. ..+++|++|+|+||.|+++++.. .+|..++
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~ 99 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEE
Confidence 4566788889999999999999999999999999999987642 34788889999999999999932 2356677
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCC-CCCccEEEEecCCC-----CCCChhHHHHHHHHHcccCccceE
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRS-LRGVTHVIVDEIHE-----RGMNEDFLLIVLKELLPRRPELRL 449 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~-L~~is~VIIDEaHe-----R~~~~D~Ll~lLr~ll~~r~~lkl 449 (1197)
..+|+..+.+... .+++|+|||||+|.+.+..++. ++++++|||||+|+ |+...+.++..++. .++++|+
T Consensus 100 ~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~~~~i 175 (702)
T 2p6r_A 100 ISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNKALRV 175 (702)
T ss_dssp EECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCTTCEE
T ss_pred EEeCCCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh---cCcCceE
Confidence 7777766655433 4799999999999999888774 89999999999997 55555555555543 4578999
Q ss_pred EEecccC-CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhH
Q 000991 450 ILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1197)
Q Consensus 450 IlmSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 528 (1197)
|+||||+ |.+.+++||+ ++++..+++.+|+...+... . .. .+....
T Consensus 176 i~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~----------~--~~-~~~~~~------------------- 222 (702)
T 2p6r_A 176 IGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCE----------G--TL-ELFDGA------------------- 222 (702)
T ss_dssp EEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECS----------S--EE-EEEETT-------------------
T ss_pred EEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeC----------C--ee-eccCcc-------------------
Confidence 9999999 5999999997 67888899999998765321 0 00 000000
Q ss_pred HHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcC--CCCCCC
Q 000991 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH--PLLGDP 606 (1197)
Q Consensus 529 ~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~--~~~~~~ 606 (1197)
.... ..+ . +..++.+.+. .++++||||+++++++.+++.|... ......
T Consensus 223 -------------------~~~~-----~~~--~-~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~ 273 (702)
T 2p6r_A 223 -------------------FSTS-----RRV--K-FEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENE 273 (702)
T ss_dssp -------------------EEEE-----EEC--C-HHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred -------------------hhhh-----hhh--h-HHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChH
Confidence 0000 000 0 1222333333 4689999999999999999988742 000000
Q ss_pred ---------------------CceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcc
Q 000991 607 ---------------------SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKET 665 (1197)
Q Consensus 607 ---------------------~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~ 665 (1197)
.+..+.++||+|+.++|+.+++.|++|.++|||||+++++|||+|++++||++ ..
T Consensus 274 ~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~ 349 (702)
T 2p6r_A 274 GLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LY 349 (702)
T ss_dssp SHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SE
T ss_pred HHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ce
Confidence 01247889999999999999999999999999999999999999999999985 44
Q ss_pred cccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccchhhhhh---cCCccccccchhh------hhHHh
Q 000991 666 SYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYDAFAD---YQLPELLRTPLQS------LCLQI 733 (1197)
Q Consensus 666 ~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~~~l~~---~~~PEIlr~~L~~------l~L~l 733 (1197)
.|| +. ..|+|.++|.||+|||||.+ +|.||.+++...++.+.+ ...||+++.+|.. .++..
T Consensus 350 ~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~ 422 (702)
T 2p6r_A 350 RFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSI 422 (702)
T ss_dssp EES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHH
T ss_pred eeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHH
Confidence 576 11 57889999999999999998 899999999887765443 5679999998876 44555
Q ss_pred hhcCC----CCHHHHHhhhc-----CCCChhhHHHHHHHHHHhcccccC--CccccccccccccCCchhhHHHHHHhhhc
Q 000991 734 KSLQL----GSISEFLSRAL-----QPPEPLSVKNAIEYLQIIGALDEN--ENLTVLGRNLSMLPVEPKLGKMLILGAIF 802 (1197)
Q Consensus 734 k~l~~----~~i~~fL~~~l-----dpP~~~~v~~Al~~L~~lGaLd~~--~~lT~LG~~ls~lPvdp~lgK~ll~g~~~ 802 (1197)
...+. .++.+|+...+ ++|..+.+..|++.|...|+|+.+ +.+|++|+.++.+|++|.+++|++.+...
T Consensus 423 ~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~ 502 (702)
T 2p6r_A 423 ICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSR 502 (702)
T ss_dssp HHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhc
Confidence 55553 24556654322 378889999999999999999987 78999999999999999999999999888
Q ss_pred --CCcchHHHHHHhhcC-CCCcccCcchHHHHHHHH---hhc------ccCChh---hHHHHHHHHHHHHHHhhcccchh
Q 000991 803 --NCLDPVMTVVAGLSV-RDPFLMPFDKKDLAESAK---AQF------SARDYS---DHLALVRAYDGWKDAERHQSGYE 867 (1197)
Q Consensus 803 --~Cl~~~ltIaA~ls~-~~pF~~p~~~~~~a~~~r---~~f------~~~~~S---Dhl~~l~af~~w~~~~~~~~~~~ 867 (1197)
.|..+++.|+|+.+. .+.++.+.+ .+..+... ..+ ...... .|+-..-+.+.|.... ....
T Consensus 503 ~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~---~l~~ 578 (702)
T 2p6r_A 503 MELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEK---DEDE 578 (702)
T ss_dssp CCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTC---CHHH
T ss_pred ccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCC---ChHH
Confidence 899999998887764 567777766 33222221 122 100011 3444445566676432 2245
Q ss_pred hHhhhccchhhHHHHHHH
Q 000991 868 YCWKNFLSAQTLKAIDSL 885 (1197)
Q Consensus 868 ~c~~~~Ls~~~l~~i~~~ 885 (1197)
.|.++.+...-++.+.+-
T Consensus 579 i~~~~~~~~gdl~~i~~~ 596 (702)
T 2p6r_A 579 ICAKYGIAPGDLRRIVET 596 (702)
T ss_dssp HHHHTTCCHHHHHHHHHH
T ss_pred HHHHhCCcHHhHHHHHHH
Confidence 777777766555554443
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.8e-49 Score=500.14 Aligned_cols=463 Identities=17% Similarity=0.139 Sum_probs=333.3
Q ss_pred ChhhHHHHHHhhcCCCHHHHHHHHHH-HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHH
Q 000991 284 SPEGQKMLEFRRSLPSYKERDALLKA-ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362 (1197)
Q Consensus 284 s~~~~~~~~~R~~LPi~~~q~~Il~~-I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qv 362 (1197)
.+.+.+.++.+.--..+.+|.+++.. +.++++++|+||||||||+++++++++.+... ..+++|++|+|+||.|+
T Consensus 9 ~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P~raLa~q~ 84 (720)
T 2zj8_A 9 DERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVPLKALAEEK 84 (720)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECSSGGGHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcCcHHHHHHH
Confidence 34455555555545678888888887 88999999999999999999999999887643 25799999999999999
Q ss_pred HHHHHH--HhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCC-----CCCCChhHHH
Q 000991 363 SERVAA--ERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIH-----ERGMNEDFLL 434 (1197)
Q Consensus 363 a~rVa~--e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaH-----eR~~~~D~Ll 434 (1197)
+++++. ++|..++..+|. +..+.....+++|+|||||+|...+..++ ++.++++|||||+| +|+...+.++
T Consensus 85 ~~~~~~l~~~g~~v~~~~G~-~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll 163 (720)
T 2zj8_A 85 FQEFQDWEKIGLRVAMATGD-YDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVIL 163 (720)
T ss_dssp HHHTGGGGGGTCCEEEECSC-SSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEecCC-CCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHH
Confidence 999952 234455555551 22222223478999999999999888776 48999999999999 4554444444
Q ss_pred HHHHHHcccCccceEEEecccC-CHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHH
Q 000991 435 IVLKELLPRRPELRLILMSATL-NAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1197)
Q Consensus 435 ~lLr~ll~~r~~lklIlmSATl-~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~ 513 (1197)
..++ +++|+|+||||+ |.+.+++||+ ++.+..+++.+|+...+..+. . + .+...
T Consensus 164 ~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~------~------~-~~~~~----- 218 (720)
T 2zj8_A 164 AHML------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQG------F------V-TWEDG----- 218 (720)
T ss_dssp HHHB------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETT------E------E-EETTS-----
T ss_pred HHhh------cCCeEEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCC------e------e-ecccc-----
Confidence 4332 278999999999 7899999996 456777788888876543110 0 0 00000
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHH
Q 000991 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSL 593 (1197)
Q Consensus 514 ~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l 593 (1197)
... ..+.+..++.+++. .++++||||+++++++.+
T Consensus 219 ---------------------------------~~~----------~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~ 253 (720)
T 2zj8_A 219 ---------------------------------SID----------RFSSWEELVYDAIR--KKKGALIFVNMRRKAERV 253 (720)
T ss_dssp ---------------------------------CEE----------ECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHH
T ss_pred ---------------------------------chh----------hhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHH
Confidence 000 00001122333333 458999999999999999
Q ss_pred HHHHHcCCC--CCC------------------------CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccc
Q 000991 594 KDQLQAHPL--LGD------------------------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETS 647 (1197)
Q Consensus 594 ~~~L~~~~~--~~~------------------------~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtG 647 (1197)
+..|..... ... .....+.+|||+|+.++|+.+++.|++|.++|||||+++++|
T Consensus 254 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 333 (720)
T 2zj8_A 254 ALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAG 333 (720)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGG
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhcc
Confidence 998875200 000 001238999999999999999999999999999999999999
Q ss_pred cccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccchhh----hhhcCCcc
Q 000991 648 ITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYDA----FADYQLPE 720 (1197)
Q Consensus 648 IdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~~~----l~~~~~PE 720 (1197)
||+|++++||+.+ ..||. .+ ..|+|.++|.||+|||||.+ +|.||.+++...++. +.....++
T Consensus 334 vdip~~~~VI~~~----~~yd~-~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~ 403 (720)
T 2zj8_A 334 INTPAFRVIIRDI----WRYSD-FG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEK 403 (720)
T ss_dssp CCCCBSEEEECCS----EECCS-SS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCC
T ss_pred CCCCceEEEEcCC----eeecC-CC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCC
Confidence 9999999999843 33551 11 25789999999999999997 799999999876442 33333333
Q ss_pred cccc-----chhhhhHHhhhcCC----CCHHHHHhhhc-------CCCChhhHHHHHHHHHHhcccc-cCC---cccccc
Q 000991 721 LLRT-----PLQSLCLQIKSLQL----GSISEFLSRAL-------QPPEPLSVKNAIEYLQIIGALD-ENE---NLTVLG 780 (1197)
Q Consensus 721 Ilr~-----~L~~l~L~lk~l~~----~~i~~fL~~~l-------dpP~~~~v~~Al~~L~~lGaLd-~~~---~lT~LG 780 (1197)
+... .|...++.....+. .++.+|+...+ ++|..+.+..+++.|...|+|+ .++ .+|++|
T Consensus 404 i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG 483 (720)
T 2zj8_A 404 LFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLG 483 (720)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHH
T ss_pred cEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHH
Confidence 3322 12233344444442 24556654322 2333468999999999999998 655 699999
Q ss_pred ccccccCCchhhHHHHHHhhhc----CCcchHHHHHHhhcC-CCCcccCcchHHHH
Q 000991 781 RNLSMLPVEPKLGKMLILGAIF----NCLDPVMTVVAGLSV-RDPFLMPFDKKDLA 831 (1197)
Q Consensus 781 ~~ls~lPvdp~lgK~ll~g~~~----~Cl~~~ltIaA~ls~-~~pF~~p~~~~~~a 831 (1197)
+.++.+|++|.++|+++.+... .|..++|+|+|+++. .+.|+.|.+.....
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~ 539 (720)
T 2zj8_A 484 IRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLE 539 (720)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHH
Confidence 9999999999999999999887 899999999998885 67787776554433
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=419.65 Aligned_cols=246 Identities=28% Similarity=0.479 Sum_probs=212.6
Q ss_pred CCHHHHHhhhcCCCChhhHHHHHHHHHHhcccccCCccccccccccccCCchhhHHHHHHhhhcCCcchHHHHHHhhcCC
Q 000991 739 GSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVR 818 (1197)
Q Consensus 739 ~~i~~fL~~~ldpP~~~~v~~Al~~L~~lGaLd~~~~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~~~ltIaA~ls~~ 818 (1197)
|+...||..++|||+.+++..|++.|..+||||++|+||++|+.|+.||+||++||||+.|+.++|++++++|||+||++
T Consensus 2 g~~~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~ 81 (270)
T 3i4u_A 2 GDRGPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQ 81 (270)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CCchhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCC
Confidence 45556666669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcchHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHhhcccchhhHhhhccchhhHHHHHHHHHHHHHHHHHcCC
Q 000991 819 DPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGL 898 (1197)
Q Consensus 819 ~pF~~p~~~~~~a~~~r~~f~~~~~SDhl~~l~af~~w~~~~~~~~~~~~c~~~~Ls~~~l~~i~~~r~ql~~~l~~~gl 898 (1197)
+||+.|.+++++++.+|++|+ +..|||++++|+|++|++.. ...+||++||||+++|+++.++|+||.++|++.|+
T Consensus 82 ~~f~~p~~~~~~a~~~~~~f~-~~~sD~ltlLn~~~~~~~~~---~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~ 157 (270)
T 3i4u_A 82 NVFYRPKDKQALADQKKAKFH-QTEGDHLTLLAVYNSWKNNK---FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKL 157 (270)
T ss_dssp CCBCCCGGGHHHHHHHHHTTC-BTTBHHHHHHHHHHHHHHTT---TCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCchhHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHcC---chhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998 67899999999999998643 35689999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhccCCCccccccccccceeEeecCC-EEEEecCCcCCCCCCCCCCEEEEEeeeeccc
Q 000991 899 VDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDG-QVLLYSNSVNAGVPKIPYPWLVFNEKIKVNS 977 (1197)
Q Consensus 899 ~~~~~~~~n~~s~~~~lira~L~aGlypnva~~~~~~~~~~~~t~~~~-~v~iHPsSv~~~~~~~~~~~lvy~E~v~tsk 977 (1197)
.. +..+.+...|++|||+|||+|||+... ...|+|..++ .|+|||+|++++. +++||||+|++.|++
T Consensus 158 ~~------~s~~~~~~~i~~~L~aG~~~nvA~~~~---~~~Y~~~~~~~~v~iHPsS~L~~~---~p~wvvy~Elv~Tsk 225 (270)
T 3i4u_A 158 DV------VSCGKSTVRVQKAICSGFFRNAAKKDP---QEGYRTLIDQQVVYIHPSSALFNR---QPEWVVYHELVLTTK 225 (270)
T ss_dssp CC------CCCTTCTHHHHHHHHHHHGGGEEEECS---SSSEEETTTCCEEEECTTSTTTTS---CCSEEEEEEEEESSS
T ss_pred Cc------CCCcchHHHHHHHHHHHhHHHHheeCC---CCceEEccCCCEEEECchhhhcCC---CCCEEEEEehhhhhH
Confidence 42 122346788999999999999998643 2368887665 5999999999864 468999999999999
Q ss_pred cccccCCCCChHHHHHhhCcccc
Q 000991 978 VFLRDSTGVSDSVLLLFGGNISR 1000 (1197)
Q Consensus 978 ~yir~~T~V~p~~LlLFgg~~~~ 1000 (1197)
.|||+||.|+|.||..+++....
T Consensus 226 ~y~r~vt~I~p~wL~~~ap~~~~ 248 (270)
T 3i4u_A 226 EYMREVTTIDPRWLVEFAPAFFK 248 (270)
T ss_dssp EEEEEEEECCHHHHHHHCTTTEE
T ss_pred hHHHhccccCHHHHHHHhHHHhc
Confidence 99999999999999999998754
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.4e-38 Score=368.97 Aligned_cols=324 Identities=16% Similarity=0.239 Sum_probs=223.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
+.+..+.-.+.+.+|.+++..+.+++++++++|||||||+++++++++.+.... ...+++|++|+++|+.|+++++..
T Consensus 53 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~ 130 (414)
T 3eiq_A 53 RGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAPTRELAQQIQKVVMA 130 (414)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--CSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--CceeEEEEeChHHHHHHHHHHHHH
Confidence 344444555677888888899999999999999999999999999998764322 334577777999999999998876
Q ss_pred HhCCcccceeeeEeee-------ccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHH
Q 000991 369 ERGEKLGESVGYKVRL-------EGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1197)
Q Consensus 369 e~g~~lg~~VGy~ir~-------e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~l 440 (1197)
.. ...+..++..+.. .......++|+|+|||+|++.+..+. .+.++++|||||||+. .+.++...+...+
T Consensus 131 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~-~~~~~~~~~~~~~ 208 (414)
T 3eiq_A 131 LG-DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM-LSRGFKDQIYDIF 208 (414)
T ss_dssp HG-GGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH-HHTTTHHHHHHHH
T ss_pred Hh-cccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh-hccCcHHHHHHHH
Confidence 54 2233333322211 11222568999999999999988765 5788999999999963 2333444444445
Q ss_pred cccCccceEEEecccCCHHHH---HhhhCCCCccccCCcccce---eeeehHhHHHHhhhccCcccccccchhhhhHHHH
Q 000991 441 LPRRPELRLILMSATLNAELF---SSYFGGAPMLHIPGFTYPV---RAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQ 514 (1197)
Q Consensus 441 l~~r~~lklIlmSATl~~~~f---~~yf~~~pvi~i~gr~~PV---~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~ 514 (1197)
....++.++|+||||++.+.. ..++.+...+.+.....+. ...|..
T Consensus 209 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 260 (414)
T 3eiq_A 209 QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN---------------------------- 260 (414)
T ss_dssp TTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEE----------------------------
T ss_pred HhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEE----------------------------
Confidence 555678999999999965433 3344332222222111110 000000
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHH
Q 000991 515 KQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLK 594 (1197)
Q Consensus 515 ~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~ 594 (1197)
....+.....+..++.....+++|||++++++++.++
T Consensus 261 -------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 297 (414)
T 3eiq_A 261 -------------------------------------------VEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLT 297 (414)
T ss_dssp -------------------------------------------CSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHH
T ss_pred -------------------------------------------eChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH
Confidence 0000112234555566667789999999999999999
Q ss_pred HHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCC
Q 000991 595 DQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTP 674 (1197)
Q Consensus 595 ~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~ 674 (1197)
+.|... ++.+..+||+++.++|..+++.|++|..+|||||+++++|||+|++++||+++.|.
T Consensus 298 ~~l~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~----------- 359 (414)
T 3eiq_A 298 EKMHAR-------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT----------- 359 (414)
T ss_dssp HHHHTT-------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS-----------
T ss_pred HHHHhc-------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCC-----------
Confidence 999876 56688999999999999999999999999999999999999999999999966664
Q ss_pred CccccccCHhhHHhhhcccCCCC-CCeEEEeccccchhh
Q 000991 675 CLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 675 ~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
|..+|.||+|||||.+ +|.||.+|++.....
T Consensus 360 -------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 360 -------NRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp -------STHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred -------CHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 6778999999999995 799999999876543
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-37 Score=400.59 Aligned_cols=378 Identities=21% Similarity=0.210 Sum_probs=247.2
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
...++.+.+|.+++..+.++++++|+||||||||+++.+++++.+. ...+++|++|+|+||.|+++++.+.++
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-----~g~rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----NKQRVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEcCcHHHHHHHHHHHHHHhC--
Confidence 3456788999999999999999999999999999999999998762 234788888999999999999998877
Q ss_pred ccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 374 LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 374 lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
.||+ +..+.....+++|+|||||+|++++..+. .+.++++|||||||.. .+.++...+-..+....+++++|+|
T Consensus 253 ---~Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l-~d~~rg~~~e~ii~~l~~~~qvl~l 327 (1108)
T 3l9o_A 253 ---DVGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM-RDKERGVVWEETIILLPDKVRYVFL 327 (1108)
T ss_dssp ---SEEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT-TSHHHHHHHHHHHHHSCTTSEEEEE
T ss_pred ---CccE-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc-cccchHHHHHHHHHhcCCCceEEEE
Confidence 3454 23334455678999999999999998876 4889999999999953 3433333322223334578999999
Q ss_pred cccC-CHHHHHhhhC-----CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhh
Q 000991 453 SATL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSS 526 (1197)
Q Consensus 453 SATl-~~~~f~~yf~-----~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~ 526 (1197)
|||+ +...|.+|++ .+.++....+..|+..++........ ...++.............. ..
T Consensus 328 SATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~------~~~vd~~~~~~~~~~~~~~-------~~ 394 (1108)
T 3l9o_A 328 SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGI------YLVVDEKSTFREENFQKAM-------AS 394 (1108)
T ss_dssp ECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCC------EEEEETTTEECHHHHHHHH-------TT
T ss_pred cCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcce------eeeeccccchhhhhHHHHH-------HH
Confidence 9999 7778888875 25566677788888765532100000 0000000000000000000 00
Q ss_pred hHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCC
Q 000991 527 IASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDP 606 (1197)
Q Consensus 527 ~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~ 606 (1197)
+................... ..............+..++..+. ....+++||||+++.+++.++..|.........
T Consensus 395 l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~l~-~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~ 470 (1108)
T 3l9o_A 395 ISNQIGDDPNSTDSRGKKGQ---TYKGGSAKGDAKGDIYKIVKMIW-KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 470 (1108)
T ss_dssp C--------------------------------CHHHHHHHHHHHH-HTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC-
T ss_pred HHhhhccccccccccccccc---ccccccccccchhHHHHHHHHHH-hcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHH
Confidence 00000000000000000000 00000000001223334444443 345679999999999999999988642110000
Q ss_pred --------------------------------CceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEE
Q 000991 607 --------------------------------SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVV 654 (1197)
Q Consensus 607 --------------------------------~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~ 654 (1197)
....|.++||+|++.+|..+++.|++|.++|||||+++++|||||+++
T Consensus 471 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~ 550 (1108)
T 3l9o_A 471 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 550 (1108)
T ss_dssp ---CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CE
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCce
Confidence 011288999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccch
Q 000991 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVY 710 (1197)
Q Consensus 655 ~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~ 710 (1197)
+||+++.+ ||.. . ..|+|.++|.||+|||||.+ .|.||.+++....
T Consensus 551 ~VI~~~~~----~d~~----~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 551 VVFTSVRK----WDGQ----Q--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599 (1108)
T ss_dssp EEESCSEE----ESSS----C--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC
T ss_pred EEEecCcc----cCcc----c--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC
Confidence 99985443 3322 1 35889999999999999998 7999999987643
No 8
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.9e-38 Score=377.99 Aligned_cols=294 Identities=20% Similarity=0.223 Sum_probs=213.6
Q ss_pred HHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeecc
Q 000991 307 LKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEG 386 (1197)
Q Consensus 307 l~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~ 386 (1197)
..++.+++++||+||||||||+++++++++.+... .++++|++|||+||.|+++++. |..+++......
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----RLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----TCCEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----CCcEEEECchHHHHHHHHHHhc-------CceEeEEecccc
Confidence 44567899999999999999999999999887642 3567888899999999998874 333444433222
Q ss_pred -ccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHHHHHhhh
Q 000991 387 -MKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYF 465 (1197)
Q Consensus 387 -~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf 465 (1197)
...+...+.++|.+.+.+.+..++.+.++++|||||||+++...++.+.++..... .++.++|+||||++.+. ..+.
T Consensus 84 ~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~ 161 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFP 161 (459)
T ss_dssp ----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSC
T ss_pred cCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhc
Confidence 12345678899999999999988889999999999999987777777777666543 36889999999997541 1111
Q ss_pred CCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhh
Q 000991 466 GGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSV 545 (1197)
Q Consensus 466 ~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~ 545 (1197)
....|+...- . .... . .
T Consensus 162 ---------~~~~pi~~~~--~-------~~~~-~---~----------------------------------------- 178 (459)
T 2z83_A 162 ---------DSNAPIHDLQ--D-------EIPD-R---A----------------------------------------- 178 (459)
T ss_dssp ---------CCSSCEEEEE--C-------CCCS-S---C-----------------------------------------
T ss_pred ---------cCCCCeEEec--c-------cCCc-c---h-----------------------------------------
Confidence 1112221100 0 0000 0 0
Q ss_pred hhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHH
Q 000991 546 QTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRL 625 (1197)
Q Consensus 546 ~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~ 625 (1197)
....+ ..+ .. ..+++||||+++++++.+++.|... ++.+..+||. +|..
T Consensus 179 -----------~~~~~-------~~l-~~-~~~~~LVF~~s~~~~~~l~~~L~~~-------g~~v~~lh~~----~R~~ 227 (459)
T 2z83_A 179 -----------WSSGY-------EWI-TE-YAGKTVWFVASVKMGNEIAMCLQRA-------GKKVIQLNRK----SYDT 227 (459)
T ss_dssp -----------CSSCC-------HHH-HH-CCSCEEEECSCHHHHHHHHHHHHHT-------TCCEEEESTT----CCCC
T ss_pred -----------hHHHH-------HHH-Hh-cCCCEEEEeCChHHHHHHHHHHHhc-------CCcEEecCHH----HHHH
Confidence 00000 011 11 2689999999999999999999986 5668899984 7889
Q ss_pred hcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCccccc--CCCCCCCccccccCHhhHHhhhcccCCCC--CCeE
Q 000991 626 IFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYD--ALNNTPCLLPSWISKAAARQRRGRAGRVQ--PGEC 701 (1197)
Q Consensus 626 v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD--~~~~~~~l~~~~iSkas~~QR~GRAGR~~--~G~c 701 (1197)
+++.|++|+++|||||+++++|||||+ ++|||+|+.+.+.|+ ....+..+...|.|.++|.||+|||||.+ +|.|
T Consensus 228 ~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~ 306 (459)
T 2z83_A 228 EYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDE 306 (459)
T ss_dssp CGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred HHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeE
Confidence 999999999999999999999999999 999999988877654 22333333458999999999999999996 8999
Q ss_pred EEecccc
Q 000991 702 YHLYPRY 708 (1197)
Q Consensus 702 y~Lys~~ 708 (1197)
|.+++..
T Consensus 307 ~~~~~~~ 313 (459)
T 2z83_A 307 YHYGGAT 313 (459)
T ss_dssp EEECSCC
T ss_pred EEEEccc
Confidence 9999875
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.3e-36 Score=355.61 Aligned_cols=320 Identities=15% Similarity=0.184 Sum_probs=225.9
Q ss_pred CCHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 298 PSYKERDALLKAISEN--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~--~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
..+.+|.++++.+.++ +++++++|||||||+++.+++++.+... ....+++|++|+++||.|+++++........+
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--CCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 3455667777777776 9999999999999999999999876432 23346777779999999999988776543334
Q ss_pred ceeeeEeeecc---ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEE
Q 000991 376 ESVGYKVRLEG---MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 376 ~~VGy~ir~e~---~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
..+++...... .....++|+|+||+.|++.+.... .+.++++|||||||+......+...+........++.++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i 204 (412)
T 3fht_A 125 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 204 (412)
T ss_dssp CCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEE
T ss_pred ceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEE
Confidence 44554443322 223457999999999999887644 5689999999999964221222222222222344678999
Q ss_pred EecccCCHH--HH-HhhhCCCCccccCCccc---ceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhh
Q 000991 451 LMSATLNAE--LF-SSYFGGAPMLHIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1197)
Q Consensus 451 lmSATl~~~--~f-~~yf~~~pvi~i~gr~~---PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 524 (1197)
+||||++.. .+ ..++.....+.+..... .+...+..
T Consensus 205 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 246 (412)
T 3fht_A 205 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL-------------------------------------- 246 (412)
T ss_dssp EEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEE--------------------------------------
T ss_pred EEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEE--------------------------------------
Confidence 999999764 22 23333322222211110 01111100
Q ss_pred hhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCC
Q 000991 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG 604 (1197)
Q Consensus 525 ~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~ 604 (1197)
....+.....+..++.....+++||||+++++++.+++.|...
T Consensus 247 ---------------------------------~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---- 289 (412)
T 3fht_A 247 ---------------------------------CSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---- 289 (412)
T ss_dssp ---------------------------------CSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT----
T ss_pred ---------------------------------cCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 0000111223344444556789999999999999999999986
Q ss_pred CCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHh
Q 000991 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1197)
Q Consensus 605 ~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSka 684 (1197)
++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|++++||+++.|....+ +.|..
T Consensus 290 ---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~------------~~s~~ 354 (412)
T 3fht_A 290 ---GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNE 354 (412)
T ss_dssp ---TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS------------SBCHH
T ss_pred ---CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC------------Ccchh
Confidence 556889999999999999999999999999999999999999999999999777753321 34888
Q ss_pred hHHhhhcccCCCC-CCeEEEeccccc
Q 000991 685 AARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 685 s~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
+|.||+|||||.+ +|.|+.+++...
T Consensus 355 ~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 355 TYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred eeecccCcccCCCCCceEEEEEcChh
Confidence 9999999999985 599999998654
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.6e-36 Score=354.23 Aligned_cols=320 Identities=18% Similarity=0.218 Sum_probs=227.9
Q ss_pred CCCHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 297 LPSYKERDALLKAISEN--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~--~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
...+.+|.++++.+.++ +++++++|||||||+++.+++++.+... +...+++|++|+++|+.|+++++.+.. ...
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~ 102 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAICLAPSRELARQTLEVVQEMG-KFT 102 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHHHHHHHHHHHT-TTS
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEEEECCCHHHHHHHHHHHHHHh-ccc
Confidence 34566777788888777 9999999999999999999998866432 234467777799999999999886643 222
Q ss_pred cceeeeEe--eeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEE
Q 000991 375 GESVGYKV--RLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 375 g~~VGy~i--r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIl 451 (1197)
+..++... ........+++|+|+||+.|++.+.... .+.++++|||||||+......+...+.+......++.++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~ 182 (395)
T 3pey_A 103 KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVL 182 (395)
T ss_dssp CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEE
T ss_pred CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEE
Confidence 32232211 2222233468999999999999887655 68899999999999643323444444333333456789999
Q ss_pred ecccCCHH--HHHh-hhCCCCccccCCcccc---eeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhh
Q 000991 452 MSATLNAE--LFSS-YFGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1197)
Q Consensus 452 mSATl~~~--~f~~-yf~~~pvi~i~gr~~P---V~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1197)
||||++.. .+.. ++.....+.+.....+ +...+..
T Consensus 183 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 223 (395)
T 3pey_A 183 FSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMD--------------------------------------- 223 (395)
T ss_dssp EESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEE---------------------------------------
T ss_pred EEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEE---------------------------------------
Confidence 99999653 2332 3322222222211111 1111100
Q ss_pred hhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCC
Q 000991 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1197)
Q Consensus 526 ~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 605 (1197)
..........+..+......+++||||+++++++.+++.|...
T Consensus 224 --------------------------------~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----- 266 (395)
T 3pey_A 224 --------------------------------CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE----- 266 (395)
T ss_dssp --------------------------------CSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT-----
T ss_pred --------------------------------cCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc-----
Confidence 0000111223444455556789999999999999999999876
Q ss_pred CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhh
Q 000991 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1197)
Q Consensus 606 ~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas 685 (1197)
++.+..+||+++..+|..+++.|++|+.+|||||+++++|||+|++++||+++.|. +...+.|..+
T Consensus 267 --~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~------------~~~~~~s~~~ 332 (395)
T 3pey_A 267 --GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPT------------LANGQADPAT 332 (395)
T ss_dssp --TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCB------------CTTSSBCHHH
T ss_pred --CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCC------------CCcCCCCHHH
Confidence 45688999999999999999999999999999999999999999999999966664 2234579999
Q ss_pred HHhhhcccCCCC-CCeEEEeccccc
Q 000991 686 ARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 686 ~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
|.||+|||||.+ +|.|+.+++...
T Consensus 333 ~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 333 YIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp HHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred hhHhccccccCCCCceEEEEEechH
Confidence 999999999996 599999987543
No 11
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-36 Score=410.78 Aligned_cols=450 Identities=14% Similarity=0.127 Sum_probs=297.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHH-HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHH
Q 000991 287 GQKMLEFRRSLPSYKERDALLKAI-SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER 365 (1197)
Q Consensus 287 ~~~~~~~R~~LPi~~~q~~Il~~I-~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~r 365 (1197)
++.+...+...+-. .|.+++..+ ..+++++|+||||||||+++.++|++.+... ...+++|++|+|+||.|+++.
T Consensus 916 ~e~l~~~~f~~fnp-iQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q~~~~ 991 (1724)
T 4f92_B 916 FESLYQDKFPFFNP-IQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQVYMD 991 (1724)
T ss_dssp HHTTTTTTCSBCCH-HHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCH-HHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---CCCEEEEEcChHHHHHHHHHH
Confidence 33333333333334 455555555 6688999999999999999999999988653 334688888999999999999
Q ss_pred HHHHhCCcccceeeeEeeecc---ccCCCceEEEEcchHHHHHHhcC---CCCCCccEEEEecCCC----CCCChhHHHH
Q 000991 366 VAAERGEKLGESVGYKVRLEG---MKGRDTRLMFCTTGILLRRLLVD---RSLRGVTHVIVDEIHE----RGMNEDFLLI 435 (1197)
Q Consensus 366 Va~e~g~~lg~~VGy~ir~e~---~~~~~t~Ilv~Tpg~LLr~L~~d---~~L~~is~VIIDEaHe----R~~~~D~Ll~ 435 (1197)
+.+.++..+|..||.-..... ....+++|+|||||.+..++... ..++++++|||||+|. ||...+.++.
T Consensus 992 ~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~ 1071 (1724)
T 4f92_B 992 WYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICS 1071 (1724)
T ss_dssp HHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHH
T ss_pred HHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHH
Confidence 999888777777764332111 11235789999999986655432 2578999999999994 3333334444
Q ss_pred HHHHHcc-cCccceEEEecccC-CHHHHHhhhCCCC--c--cccCCcccceeeeehHhHHHHhhhccCcccccccchhhh
Q 000991 436 VLKELLP-RRPELRLILMSATL-NAELFSSYFGGAP--M--LHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEK 509 (1197)
Q Consensus 436 lLr~ll~-~r~~lklIlmSATl-~~~~f~~yf~~~p--v--i~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~ 509 (1197)
.++.+.. ..+++|+|+||||+ |++.+++|++..+ + +....|..|++.+... +.... . ..
T Consensus 1072 rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~-------~~~~~------~-~~- 1136 (1724)
T 4f92_B 1072 RMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQG-------FNISH------T-QT- 1136 (1724)
T ss_dssp HHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEE-------ECCCS------H-HH-
T ss_pred HHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEe-------ccCCC------c-hh-
Confidence 4444433 34679999999999 9999999998533 2 2233344454443210 00000 0 00
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHH
Q 000991 510 SWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD 589 (1197)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~e 589 (1197)
.... +...+...+.+....+++||||+++..
T Consensus 1137 ----------------~~~~---------------------------------~~~~~~~~i~~~~~~~~~lVF~~sR~~ 1167 (1724)
T 4f92_B 1137 ----------------RLLS---------------------------------MAKPVYHAITKHSPKKPVIVFVPSRKQ 1167 (1724)
T ss_dssp ----------------HHHT---------------------------------THHHHHHHHHHHCSSSCEEEEESSHHH
T ss_pred ----------------hhhh---------------------------------hcchHHHHHHHhcCCCCeeeeCCCHHH
Confidence 0000 000111222334567899999999999
Q ss_pred HHHHHHHHHcCC--------CC--------------CC-----CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeec
Q 000991 590 INSLKDQLQAHP--------LL--------------GD-----PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN 642 (1197)
Q Consensus 590 i~~l~~~L~~~~--------~~--------------~~-----~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATn 642 (1197)
++.++..|.... .. .+ .....|++|||+|++.+|+.|++.|++|.++|||||+
T Consensus 1168 ~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~ 1247 (1724)
T 4f92_B 1168 TRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASR 1247 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEG
T ss_pred HHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEECh
Confidence 998887664310 00 00 0023589999999999999999999999999999999
Q ss_pred ccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccchh---hhhhc
Q 000991 643 MAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYD---AFADY 716 (1197)
Q Consensus 643 iaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~~---~l~~~ 716 (1197)
++++|||+|++.+||.. . ..||..... ..++|..+|.||+|||||.| .|.|+.++.....+ .+..
T Consensus 1248 tlA~GVnlPa~~VVI~~-~---~~~dg~~~~----~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~- 1318 (1724)
T 4f92_B 1248 SLCWGMNVAAHLVIIMD-T---QYYNGKIHA----YVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY- 1318 (1724)
T ss_dssp GGSSSCCCCBSEEEEEC-S---EEEETTTTE----EEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT-
T ss_pred HHHcCCCCCccEEEEec-C---ccccCcccc----cCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC-
Confidence 99999999999999972 2 235543321 34679999999999999996 69999998765433 3332
Q ss_pred CCccccccchhh----hhHHhhhcC-CC---CHHHHHhhhc--------------C--------CCChhhHHHHHHHHHH
Q 000991 717 QLPELLRTPLQS----LCLQIKSLQ-LG---SISEFLSRAL--------------Q--------PPEPLSVKNAIEYLQI 766 (1197)
Q Consensus 717 ~~PEIlr~~L~~----l~L~lk~l~-~~---~i~~fL~~~l--------------d--------pP~~~~v~~Al~~L~~ 766 (1197)
.|+.+...|.. .++.....+ +. ++.+||..++ . ..-.+.++.+++.|.+
T Consensus 1319 -~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~ 1397 (1724)
T 4f92_B 1319 -EPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQ 1397 (1724)
T ss_dssp -SCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 33434444432 223222222 22 3444543221 1 1112357889999999
Q ss_pred hcccc--cCC--ccccccccccccCCchhhHHHHHHhhhcCCc-chHHHHHHh
Q 000991 767 IGALD--ENE--NLTVLGRNLSMLPVEPKLGKMLILGAIFNCL-DPVMTVVAG 814 (1197)
Q Consensus 767 lGaLd--~~~--~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl-~~~ltIaA~ 814 (1197)
.|+|. +++ .+|++|+++|.++++|..++++..+..-++. ..+|.+.|.
T Consensus 1398 ~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~ 1450 (1724)
T 4f92_B 1398 SKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISN 1450 (1724)
T ss_dssp TTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHT
T ss_pred CCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcC
Confidence 99995 333 4799999999999999999999877655553 445655543
No 12
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.2e-38 Score=388.62 Aligned_cols=304 Identities=18% Similarity=0.178 Sum_probs=228.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHH
Q 000991 290 MLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAE 369 (1197)
Q Consensus 290 ~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e 369 (1197)
.++.|..+|++.+|++|+..+.++++++++||||||||+++++++++. ..+++|++|||+||.|++++++++
T Consensus 209 ~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------g~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 209 SMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp HHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------TCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------CCeEEEEcchHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999998861 236888889999999999999999
Q ss_pred hCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceE
Q 000991 370 RGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1197)
Q Consensus 370 ~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lkl 449 (1197)
++..++..+|+.. ...+++|+|+|||+|+. ...-.++++++|||||||+++...+..+..+...+.......+
T Consensus 281 ~g~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 281 HGIDPNIRTGVRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp HSCCCEEECSSCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred hCCCeeEEECcEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceE
Confidence 9988888777644 34578999999999843 1122577899999999999776666555555565555455558
Q ss_pred EEecccCCHHHHHhhhCCCCccccCC-cccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhH
Q 000991 450 ILMSATLNAELFSSYFGGAPMLHIPG-FTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1197)
Q Consensus 450 IlmSATl~~~~f~~yf~~~pvi~i~g-r~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 528 (1197)
++||||++.. +. .+. ..+++...+... +..
T Consensus 354 il~SAT~~~~-----i~------~~~p~i~~v~~~~~~~--------------i~~------------------------ 384 (666)
T 3o8b_A 354 VLATATPPGS-----VT------VPHPNIEEVALSNTGE--------------IPF------------------------ 384 (666)
T ss_dssp EEEESSCTTC-----CC------CCCTTEEEEECBSCSS--------------EEE------------------------
T ss_pred EEECCCCCcc-----cc------cCCcceEEEeecccch--------------hHH------------------------
Confidence 8899998652 10 000 011111111000 000
Q ss_pred HHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCc
Q 000991 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR 608 (1197)
Q Consensus 529 ~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~ 608 (1197)
+ ...+. +.....+++||||+++++++.+++.|... +
T Consensus 385 --------------~------------~~~~~-----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~-------g 420 (666)
T 3o8b_A 385 --------------Y------------GKAIP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGL-------G 420 (666)
T ss_dssp --------------T------------TEEEC-----------GGGSSSSEEEEECSCHHHHHHHHHHHHTT-------T
T ss_pred --------------H------------Hhhhh-----------hhhccCCcEEEEeCCHHHHHHHHHHHHhC-------C
Confidence 0 00000 01225689999999999999999999976 5
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCccc----ccCCCCCCCccccccCHh
Q 000991 609 VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETS----YDALNNTPCLLPSWISKA 684 (1197)
Q Consensus 609 ~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~----yD~~~~~~~l~~~~iSka 684 (1197)
+.+..+||+|++++ ++++..+||||||++|+||||| |++|||+|+.+... ||+..++.. ...|+|.+
T Consensus 421 ~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~ 491 (666)
T 3o8b_A 421 INAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAV 491 (666)
T ss_dssp CCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHH
T ss_pred CcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc-ccCcCCHH
Confidence 67999999998765 3456679999999999999997 99999999888665 445455443 35789999
Q ss_pred hHHhhhcccCCCCCCeEEEeccccchh
Q 000991 685 AARQRRGRAGRVQPGECYHLYPRYVYD 711 (1197)
Q Consensus 685 s~~QR~GRAGR~~~G~cy~Lys~~~~~ 711 (1197)
+|.||+|||||.++|. |.||+..+..
T Consensus 492 syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 492 SRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp HHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred HHHHHhccCCCCCCCE-EEEEecchhh
Confidence 9999999999977899 9999876543
No 13
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-36 Score=410.31 Aligned_cols=449 Identities=18% Similarity=0.161 Sum_probs=291.1
Q ss_pred HHHHHH-HHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc------CCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 302 ERDALL-KAISENQVVVVSGETGCGKTTQLPQYILESETEAAR------GAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 302 ~q~~Il-~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~------g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
.|.+++ .++..+++++|+||||||||+++.++|++.+..... ....++|+++|+|+||.|+.+.+.+.++. +
T Consensus 83 iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~-~ 161 (1724)
T 4f92_B 83 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT-Y 161 (1724)
T ss_dssp HHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhh-C
Confidence 344444 456679999999999999999999999988764321 23568999999999999999999877642 3
Q ss_pred cceeeeEeee---ccccCCCceEEEEcchHHHHHHhcCC---CCCCccEEEEecCC----CCCCChhHHHHHHHH-Hccc
Q 000991 375 GESVGYKVRL---EGMKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIH----ERGMNEDFLLIVLKE-LLPR 443 (1197)
Q Consensus 375 g~~VGy~ir~---e~~~~~~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaH----eR~~~~D~Ll~lLr~-ll~~ 443 (1197)
|..||--... ......+++|+||||+.+-.++.+.. .++++++|||||+| +||...+.++..+.. ....
T Consensus 162 gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~ 241 (1724)
T 4f92_B 162 GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMT 241 (1724)
T ss_dssp TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhC
Confidence 3333311111 11112358999999999755443322 57899999999999 455444444443322 2234
Q ss_pred CccceEEEecccC-CHHHHHhhhCCCC-----ccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 444 RPELRLILMSATL-NAELFSSYFGGAP-----MLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 444 r~~lklIlmSATl-~~~~f~~yf~~~p-----vi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
.+++|+|+||||+ |.+.+++|++..+ .+.-..|+.|++.++... .. ..... .
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~---------~~------~~~~~------~- 299 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGI---------TE------KKAIK------R- 299 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEE---------CC------CCHHH------H-
T ss_pred CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEecc---------CC------cchhh------h-
Confidence 5789999999999 8999999998643 222233444555444210 00 00000 0
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHH-HHHHhhcCCCcEEEEeCCHHHHHHHHHH
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVL-CHIVKKERPGAVLVFMTGWDDINSLKDQ 596 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll-~~i~~~~~~g~iLVFl~~~~ei~~l~~~ 596 (1197)
...+ ...+ ..+.+....+++||||+++++++.+++.
T Consensus 300 ----------~~~~---------------------------------~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~ 336 (1724)
T 4f92_B 300 ----------FQIM---------------------------------NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARA 336 (1724)
T ss_dssp ----------HHHH---------------------------------HHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHH
T ss_pred ----------hHHH---------------------------------HHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHH
Confidence 0000 0011 1122233467999999999999988887
Q ss_pred HHcC----CC----CCC----------------------CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccccc
Q 000991 597 LQAH----PL----LGD----------------------PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAET 646 (1197)
Q Consensus 597 L~~~----~~----~~~----------------------~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEt 646 (1197)
|... .. ... .-...|++|||+|+.++|..|++.|++|.++|||||+++++
T Consensus 337 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~ 416 (1724)
T 4f92_B 337 IRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAW 416 (1724)
T ss_dssp HHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHH
T ss_pred HHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHh
Confidence 7531 00 000 01235889999999999999999999999999999999999
Q ss_pred ccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccc---hhhhhhcCCc-
Q 000991 647 SITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYV---YDAFADYQLP- 719 (1197)
Q Consensus 647 GIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~---~~~l~~~~~P- 719 (1197)
|||+|++++||.. ...||+..+. ..++|.++|.||+|||||.| .|.++.+.++.. |..+...+.|
T Consensus 417 GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pi 488 (1724)
T 4f92_B 417 GVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPI 488 (1724)
T ss_dssp HSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCC
T ss_pred hCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcc
Confidence 9999999999962 3347766543 34679999999999999986 699999877644 3344333333
Q ss_pred c-ccccchhhhhHHhhhcC-CC---CHHHHHhhhc------CCC-------------------ChhhHHHHHHHHHHhcc
Q 000991 720 E-LLRTPLQSLCLQIKSLQ-LG---SISEFLSRAL------QPP-------------------EPLSVKNAIEYLQIIGA 769 (1197)
Q Consensus 720 E-Ilr~~L~~l~L~lk~l~-~~---~i~~fL~~~l------dpP-------------------~~~~v~~Al~~L~~lGa 769 (1197)
| -+...+.+.+++...++ +. +..+||..+. ..| ..+.+..++..|.+.|.
T Consensus 489 eS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~l 568 (1724)
T 4f92_B 489 ESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNL 568 (1724)
T ss_dssp CCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCC
Confidence 1 11112222223222222 22 2334443221 111 11346789999999999
Q ss_pred cccC---C--ccccccccccccCCchhhHHHHHHhhhcCCcc-hHHHHHHhhc-CCCCcccC
Q 000991 770 LDEN---E--NLTVLGRNLSMLPVEPKLGKMLILGAIFNCLD-PVMTVVAGLS-VRDPFLMP 824 (1197)
Q Consensus 770 Ld~~---~--~lT~LG~~ls~lPvdp~lgK~ll~g~~~~Cl~-~~ltIaA~ls-~~~pF~~p 824 (1197)
+..+ + .+|++|+.+|+++++|...+.+.....-.|.+ ++|.+.|..+ ..+..+..
T Consensus 569 i~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~ 630 (1724)
T 4f92_B 569 VKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVRE 630 (1724)
T ss_dssp EEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCG
T ss_pred eeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCH
Confidence 9532 2 48999999999999999999988765555443 4666555433 23444433
No 14
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.6e-37 Score=370.91 Aligned_cols=293 Identities=16% Similarity=0.152 Sum_probs=219.6
Q ss_pred HHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeee
Q 000991 305 ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRL 384 (1197)
Q Consensus 305 ~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~ 384 (1197)
.|..++..+++++++||||||||+++.+++++.+... .++++|++|||+||.|+++.+. |..++|..+.
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~ 79 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----RLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPA 79 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTT
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----CCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecc
Confidence 3444445566669999999999999888988877642 2467778899999999988762 3445665544
Q ss_pred cc-ccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHHHHHh
Q 000991 385 EG-MKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSS 463 (1197)
Q Consensus 385 e~-~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~ 463 (1197)
.. ....++.|.++|+|.|.+.+..++.+.++++|||||||+++...+.++.++... ...++.++|+||||++.+....
T Consensus 80 ~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~ 158 (451)
T 2jlq_A 80 VKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPF 158 (451)
T ss_dssp CSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSS
T ss_pred ccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhh
Confidence 32 234567899999999999999888999999999999998755555555554332 2346899999999997654433
Q ss_pred hhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcch
Q 000991 464 YFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREY 543 (1197)
Q Consensus 464 yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~ 543 (1197)
++++.+++.++ +.+|... |.
T Consensus 159 ~~~~~~~~~~~-~~~p~~~-~~---------------------------------------------------------- 178 (451)
T 2jlq_A 159 PQSNSPIEDIE-REIPERS-WN---------------------------------------------------------- 178 (451)
T ss_dssp CCCSSCEEEEE-CCCCSSC-CS----------------------------------------------------------
T ss_pred hcCCCceEecC-ccCCchh-hH----------------------------------------------------------
Confidence 43333333221 1111000 00
Q ss_pred hhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHH
Q 000991 544 SVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQ 623 (1197)
Q Consensus 544 ~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er 623 (1197)
.+ +..+ .. ..+++||||+++++++.+++.|... ++.+..+||.+ +
T Consensus 179 -------------------~~---~~~l-~~-~~~~~lVF~~s~~~a~~l~~~L~~~-------g~~~~~lh~~~----~ 223 (451)
T 2jlq_A 179 -------------------TG---FDWI-TD-YQGKTVWFVPSIKAGNDIANCLRKS-------GKRVIQLSRKT----F 223 (451)
T ss_dssp -------------------SS---CHHH-HH-CCSCEEEECSSHHHHHHHHHHHHTT-------TCCEEEECTTT----H
T ss_pred -------------------HH---HHHH-Hh-CCCCEEEEcCCHHHHHHHHHHHHHc-------CCeEEECCHHH----H
Confidence 00 0011 11 3579999999999999999999876 56688999975 4
Q ss_pred HHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccc---cccCHhhHHhhhcccCCCC--C
Q 000991 624 RLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLP---SWISKAAARQRRGRAGRVQ--P 698 (1197)
Q Consensus 624 ~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~---~~iSkas~~QR~GRAGR~~--~ 698 (1197)
+.+++.|++|+++|||||+++|+|||||+ ++|||+|+.+...|| ..+...+.. .|.|.++|.||+|||||.+ +
T Consensus 224 ~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 224 DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 57899999999999999999999999999 999999999999988 556666655 8999999999999999997 7
Q ss_pred CeEEEecc
Q 000991 699 GECYHLYP 706 (1197)
Q Consensus 699 G~cy~Lys 706 (1197)
|.||.+++
T Consensus 302 g~~~~~~~ 309 (451)
T 2jlq_A 302 DDQYVFSG 309 (451)
T ss_dssp CEEEEECS
T ss_pred ccEEEEeC
Confidence 99988865
No 15
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.5e-36 Score=357.09 Aligned_cols=311 Identities=19% Similarity=0.241 Sum_probs=218.9
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc---CCceEEEecchHHHHHHHHHHHHHHHhC---C
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR---GAACSIICTQPRRISAMAVSERVAAERG---E 372 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~---g~~~~IivtqPrR~LA~qva~rVa~e~g---~ 372 (1197)
.+..|.+++..+.++++++++||||||||+++.+++++.+..... .....++|++|||+||.|+++.+.+... .
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 158 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL 158 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCc
Confidence 345667777888899999999999999999999999998876432 1244677777999999999998866542 2
Q ss_pred cccceeeeE-eee-ccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHH--cccCccc
Q 000991 373 KLGESVGYK-VRL-EGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKEL--LPRRPEL 447 (1197)
Q Consensus 373 ~lg~~VGy~-ir~-e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~l--l~~r~~l 447 (1197)
.++..+|-. ... ......+++|+|+|||+|++.+.... .+.++++|||||||.. .+.+|...+.+.+ +..+++.
T Consensus 159 ~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~-~~~gf~~~~~~i~~~~~~~~~~ 237 (434)
T 2db3_A 159 KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM-LDMGFSEDMRRIMTHVTMRPEH 237 (434)
T ss_dssp CCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHH-TSTTTHHHHHHHHHCTTSCSSC
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhh-hccCcHHHHHHHHHhcCCCCCc
Confidence 222222211 000 11123568999999999999887665 6899999999999952 3333333332222 2235788
Q ss_pred eEEEecccCCHH--HH-HhhhCCCCccccCC---cccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 448 RLILMSATLNAE--LF-SSYFGGAPMLHIPG---FTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 448 klIlmSATl~~~--~f-~~yf~~~pvi~i~g---r~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
++++||||++.+ .+ ..|+.+...+.+.. ....+...+.. .
T Consensus 238 q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~---------------~------------------- 283 (434)
T 2db3_A 238 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYE---------------V------------------- 283 (434)
T ss_dssp EEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEE---------------C-------------------
T ss_pred eEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEE---------------e-------------------
Confidence 999999999654 22 23333211111110 00111111100 0
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~ 601 (1197)
........+..++.... +++||||+++++++.+++.|...
T Consensus 284 --------------------------------------~~~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~- 323 (434)
T 2db3_A 284 --------------------------------------NKYAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEK- 323 (434)
T ss_dssp --------------------------------------CGGGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT-
T ss_pred --------------------------------------CcHHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhC-
Confidence 00001111223333333 34999999999999999999986
Q ss_pred CCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccccc
Q 000991 602 LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWI 681 (1197)
Q Consensus 602 ~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~i 681 (1197)
++.+..+||++++.+|..+++.|++|+.+|||||+++++|||||+|++||+++.|.
T Consensus 324 ------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~------------------ 379 (434)
T 2db3_A 324 ------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPS------------------ 379 (434)
T ss_dssp ------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCS------------------
T ss_pred ------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCC------------------
Confidence 56689999999999999999999999999999999999999999999999966664
Q ss_pred CHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 682 SKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 682 Skas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
|..+|.||+|||||.| .|.|+.+|+..
T Consensus 380 ~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 380 KIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp SHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred CHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 7789999999999995 79999999854
No 16
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=352.92 Aligned_cols=314 Identities=18% Similarity=0.184 Sum_probs=219.1
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccC----------------CceEEEecchHHHHHHH
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARG----------------AACSIICTQPRRISAMA 361 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g----------------~~~~IivtqPrR~LA~q 361 (1197)
..+..|.++++.+.+++++++++|||||||+++.+++++.+...+.+ ...+++|++|+|+||.|
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 45566778888899999999999999999999999999887654321 12457777799999999
Q ss_pred HHHHHHHHhCCcccceeeeEeeec------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHH
Q 000991 362 VSERVAAERGEKLGESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLL 434 (1197)
Q Consensus 362 va~rVa~e~g~~lg~~VGy~ir~e------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll 434 (1197)
+++++...... .+..++.-.... .....+++|+|+|||.|++.+..+. .+.++++|||||||.. .+..+..
T Consensus 117 ~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~-~~~~~~~ 194 (417)
T 2i4i_A 117 IYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRM-LDMGFEP 194 (417)
T ss_dssp HHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHH-HHTTCHH
T ss_pred HHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHh-hccCcHH
Confidence 99998765432 222222111110 1123468999999999999887765 6889999999999952 1112222
Q ss_pred HHHHHHcc---c--CccceEEEecccCCHH--HHHhhhCCCCccccCCccc----ceeeeehHhHHHHhhhccCcccccc
Q 000991 435 IVLKELLP---R--RPELRLILMSATLNAE--LFSSYFGGAPMLHIPGFTY----PVRAYFLENILEMTRYRLNTYNQID 503 (1197)
Q Consensus 435 ~lLr~ll~---~--r~~lklIlmSATl~~~--~f~~yf~~~pvi~i~gr~~----PV~~~yledi~~l~~~~l~~~~~i~ 503 (1197)
.++.++. . ....++++||||++.+ .+...+-+.+.....+... .+...+..
T Consensus 195 -~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------- 256 (417)
T 2i4i_A 195 -QIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVW----------------- 256 (417)
T ss_dssp -HHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEE-----------------
T ss_pred -HHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEE-----------------
Confidence 2233322 1 2367899999999653 2333332222221111100 00000000
Q ss_pred cchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhh-cCCCcEEE
Q 000991 504 DYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKK-ERPGAVLV 582 (1197)
Q Consensus 504 ~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~-~~~g~iLV 582 (1197)
.+.......+..+++. ...+++||
T Consensus 257 -------------------------------------------------------~~~~~~~~~l~~~l~~~~~~~~~lV 281 (417)
T 2i4i_A 257 -------------------------------------------------------VEESDKRSFLLDLLNATGKDSLTLV 281 (417)
T ss_dssp -------------------------------------------------------CCGGGHHHHHHHHHHTCCTTCEEEE
T ss_pred -------------------------------------------------------eccHhHHHHHHHHHHhcCCCCeEEE
Confidence 0000011123333333 35678999
Q ss_pred EeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCC
Q 000991 583 FMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKA 662 (1197)
Q Consensus 583 Fl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~ 662 (1197)
||+++++++.+++.|... ++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|++++||+++.|
T Consensus 282 f~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p 354 (417)
T 2i4i_A 282 FVETKKGADSLEDFLYHE-------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP 354 (417)
T ss_dssp ECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCC
T ss_pred EECCHHHHHHHHHHHHHC-------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCC
Confidence 999999999999999876 5668999999999999999999999999999999999999999999999996666
Q ss_pred CcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 663 KETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 663 k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
. |..+|.||+|||||.+ +|.||.+|+.....
T Consensus 355 ~------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 355 S------------------DIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp S------------------SHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred C------------------CHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 4 7889999999999995 69999999976654
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-35 Score=341.72 Aligned_cols=311 Identities=22% Similarity=0.289 Sum_probs=222.0
Q ss_pred CCHHHHHHHHHHHHcC-CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 298 PSYKERDALLKAISEN-QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~-~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
..+.+|.+++..+.++ +++++++|||||||+++..++++.+. .+...++++++|+++|+.|+++++....+.. +.
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN---ENNGIEAIILTPTRELAIQVADEIESLKGNK-NL 103 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC---SSSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CC
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc---ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCC-Cc
Confidence 4455666667766666 79999999999999999999887542 2234467777799999999999998876542 11
Q ss_pred eeeeEe-----eeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEE
Q 000991 377 SVGYKV-----RLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 377 ~VGy~i-----r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
.++... ..+.....+++|+|+||+.|++.+..+. .+.++++|||||||+. .+..+...+.+.+....++.++|
T Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~~~~~~~~~~~~i 182 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM-LNMGFIKDVEKILNACNKDKRIL 182 (367)
T ss_dssp CEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH-HTTTTHHHHHHHHHTSCSSCEEE
T ss_pred eEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh-hhhchHHHHHHHHHhCCCCceEE
Confidence 121111 0000111367899999999999887665 5889999999999963 22333333333333445788999
Q ss_pred EecccCCHH---HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhh
Q 000991 451 LMSATLNAE---LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1197)
Q Consensus 451 lmSATl~~~---~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~ 527 (1197)
+||||++.+ .+..|++....+.... ...+...|...
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------------------- 221 (367)
T 1hv8_A 183 LFSATMPREILNLAKKYMGDYSFIKAKI-NANIEQSYVEV---------------------------------------- 221 (367)
T ss_dssp EECSSCCHHHHHHHHHHCCSEEEEECCS-SSSSEEEEEEC----------------------------------------
T ss_pred EEeeccCHHHHHHHHHHcCCCeEEEecC-CCCceEEEEEe----------------------------------------
Confidence 999999764 3345554322222111 11122111100
Q ss_pred HHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCC
Q 000991 528 ASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPS 607 (1197)
Q Consensus 528 ~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~ 607 (1197)
........+..++. ...+++||||++.++++.+++.|...
T Consensus 222 --------------------------------~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~------- 261 (367)
T 1hv8_A 222 --------------------------------NENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI------- 261 (367)
T ss_dssp --------------------------------CGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT-------
T ss_pred --------------------------------ChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc-------
Confidence 00000111222222 35678999999999999999999976
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHH
Q 000991 608 RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAAR 687 (1197)
Q Consensus 608 ~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~ 687 (1197)
++.+..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.|. |..+|.
T Consensus 262 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~------------------s~~~~~ 323 (367)
T 1hv8_A 262 GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQ------------------NPESYM 323 (367)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCS------------------CHHHHH
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCC------------------CHHHhh
Confidence 56688999999999999999999999999999999999999999999999977664 788999
Q ss_pred hhhcccCCCC-CCeEEEeccccchhh
Q 000991 688 QRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 688 QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
||+|||||.+ +|.|+.++++..+..
T Consensus 324 Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 324 HRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp HHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred hcccccccCCCccEEEEEEcHHHHHH
Confidence 9999999995 899999999877654
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.9e-35 Score=344.67 Aligned_cols=313 Identities=17% Similarity=0.186 Sum_probs=224.1
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccce
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES 377 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~ 377 (1197)
..+.+|.++++.+.+++++++++|||||||+++.+++++.+... ....++++++|+++|+.|+++++..... ..+..
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~ 119 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQALIMVPTRELALQTSQVVRTLGK-HCGIS 119 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCC
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEEEEcCCHHHHHHHHHHHHHHhc-ccCce
Confidence 36677888888898999999999999999999999998765321 2334566777999999999998876542 22333
Q ss_pred eeeEeeec------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceE
Q 000991 378 VGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRL 449 (1197)
Q Consensus 378 VGy~ir~e------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lkl 449 (1197)
++...... .....+++|+||||+.|++.+.... .+.++++|||||||+. ...++. ..+..++. ..+..++
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~-~~~~~~-~~~~~i~~~~~~~~~~ 197 (400)
T 1s2m_A 120 CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM-LSRDFK-TIIEQILSFLPPTHQS 197 (400)
T ss_dssp EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH-SSHHHH-HHHHHHHTTSCSSCEE
T ss_pred EEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh-hhhchH-HHHHHHHHhCCcCceE
Confidence 33211111 1123567999999999998887654 6889999999999953 333443 33444433 4467899
Q ss_pred EEecccCCHHH---HHhhhCCCCccccCCcc--cceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhh
Q 000991 450 ILMSATLNAEL---FSSYFGGAPMLHIPGFT--YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRK 524 (1197)
Q Consensus 450 IlmSATl~~~~---f~~yf~~~pvi~i~gr~--~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 524 (1197)
++||||++... +..++.....+.+.... ..+..++..
T Consensus 198 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 239 (400)
T 1s2m_A 198 LLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAF-------------------------------------- 239 (400)
T ss_dssp EEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEE--------------------------------------
T ss_pred EEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEE--------------------------------------
Confidence 99999997542 33333321111111100 000100000
Q ss_pred hhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCC
Q 000991 525 SSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLG 604 (1197)
Q Consensus 525 ~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~ 604 (1197)
.........+..++.....+++||||+++++++.+++.|...
T Consensus 240 ----------------------------------~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---- 281 (400)
T 1s2m_A 240 ----------------------------------VEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---- 281 (400)
T ss_dssp ----------------------------------CCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH----
T ss_pred ----------------------------------echhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc----
Confidence 000011122334444556789999999999999999999875
Q ss_pred CCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHh
Q 000991 605 DPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA 684 (1197)
Q Consensus 605 ~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSka 684 (1197)
++.+..+||+++..+|..+++.|++|+.+|||||+++++|||+|++++||+++.|. |..
T Consensus 282 ---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~------------------s~~ 340 (400)
T 1s2m_A 282 ---GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK------------------TAE 340 (400)
T ss_dssp ---TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS------------------SHH
T ss_pred ---CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC------------------CHH
Confidence 45688999999999999999999999999999999999999999999999966664 788
Q ss_pred hHHhhhcccCCCC-CCeEEEeccccchhh
Q 000991 685 AARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 685 s~~QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
+|.||+|||||.+ +|.|+.+|+..+...
T Consensus 341 ~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 341 TYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp HHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred HHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 9999999999994 799999999876543
No 19
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.4e-36 Score=389.63 Aligned_cols=380 Identities=18% Similarity=0.186 Sum_probs=242.3
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh-CCccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER-GEKLG 375 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~-g~~lg 375 (1197)
++.+.+|.+++..+.++++++|+||||||||+++..++.... . ...+++|++|+++|+.|+++++.+.+ +..++
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~-~----~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~ 112 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH-R----NMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 112 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH-H----TTCEEEEEESCGGGHHHHHHHHHTTC--CCEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH-h----cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence 557889999999999999999999999999988777666543 1 23578888899999999999998765 33333
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
..+| +.....+++|+|+|||+|++++.... .+.++++|||||||.. .+.++...+...+....+++++|+|||
T Consensus 113 ~l~G-----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l-~d~~~g~~~e~ii~~l~~~v~iIlLSA 186 (997)
T 4a4z_A 113 LITG-----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYV-NDQDRGVVWEEVIIMLPQHVKFILLSA 186 (997)
T ss_dssp EECS-----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCC-CTTCTTCCHHHHHHHSCTTCEEEEEEC
T ss_pred EEeC-----CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccc-cccchHHHHHHHHHhcccCCCEEEEcC
Confidence 3333 22334568999999999999887665 6789999999999952 222221112222223456899999999
Q ss_pred cC-CHHHHHhhhC-----CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhh-h
Q 000991 455 TL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSS-I 527 (1197)
Q Consensus 455 Tl-~~~~f~~yf~-----~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~-~ 527 (1197)
|+ |...|.+|++ .+.++..+++..|+..++... ............+. +..+....... ...... .
T Consensus 187 T~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~l--~~~~~~~~ 258 (997)
T 4a4z_A 187 TVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAK-----KELIPVINQNSEFL-EANFRKHKEIL--NGESAKGA 258 (997)
T ss_dssp CCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEET-----TEEEEEECTTCCBC-HHHHHHHHHHH--C-------
T ss_pred CCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecC-----Ccchhcccchhhhh-HHHHHHHHHHh--hccccccc
Confidence 99 8999999996 345777888889988765321 00000000000000 00111000000 000000 0
Q ss_pred HHHH---HHHH-Hhhh-----hcc-----------hhhh---------hhhccccCCCCCCchhhHHHHHHHHHhhcCCC
Q 000991 528 ASAV---EDAL-EAAD-----FRE-----------YSVQ---------TQQSLSCWNPDSIGFNLIEHVLCHIVKKERPG 578 (1197)
Q Consensus 528 ~~~v---e~~l-~~~~-----~~~-----------~~~~---------~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g 578 (1197)
.... .... .... .+. .... .......+.........+..++.. +.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-l~~~~~~ 337 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY-LRKRELL 337 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHH-HHHTTCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH-HHhCCCC
Confidence 0000 0000 0000 000 0000 000000000001122334444444 4445678
Q ss_pred cEEEEeCCHHHHHHHHHHHHcCCCCCC--------------------------------CCceEEEeccCCCCHHHHHHh
Q 000991 579 AVLVFMTGWDDINSLKDQLQAHPLLGD--------------------------------PSRVLLLACHGSMASSEQRLI 626 (1197)
Q Consensus 579 ~iLVFl~~~~ei~~l~~~L~~~~~~~~--------------------------------~~~~~I~~lHs~L~~~er~~v 626 (1197)
++|||++++++++.+++.|........ .....+.++||+|++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999876422110 001147899999999999999
Q ss_pred cCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEE
Q 000991 627 FDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYH 703 (1197)
Q Consensus 627 ~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~ 703 (1197)
++.|+.|.++|||||+++++|||+|+ +.||..+.++ ||... ..|+|..+|.||+|||||.| .|.||.
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 99999999999999999999999999 6666667776 55432 35889999999999999986 799999
Q ss_pred ecc
Q 000991 704 LYP 706 (1197)
Q Consensus 704 Lys 706 (1197)
++.
T Consensus 488 l~~ 490 (997)
T 4a4z_A 488 MAY 490 (997)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.2e-35 Score=348.25 Aligned_cols=313 Identities=15% Similarity=0.251 Sum_probs=223.4
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccccee
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV 378 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~V 378 (1197)
.+.+|.++++.+.+++++++++|||||||+++.+++++.+... ....+++|++|+|+|+.|+++++... +...+..+
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~ 136 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALILAPTRELAVQIQKGLLAL-GDYMNVQC 136 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCceEEEEcCcHHHHHHHHHHHHHH-hccCCeEE
Confidence 5567788888898999999999999999999999998765321 23346777779999999999988664 33333333
Q ss_pred eeEeeecc------ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEE
Q 000991 379 GYKVRLEG------MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 379 Gy~ir~e~------~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIl 451 (1197)
+....... ....+++|+|+|||.|++.+.... .+.++++|||||||+. .+..+...+.+.+....++.++|+
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~-~~~~~~~~~~~i~~~~~~~~~~i~ 215 (410)
T 2j0s_A 137 HACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM-LNKGFKEQIYDVYRYLPPATQVVL 215 (410)
T ss_dssp EEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-TSTTTHHHHHHHHTTSCTTCEEEE
T ss_pred EEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHH-HhhhhHHHHHHHHHhCccCceEEE
Confidence 32221111 111356899999999999887654 6788999999999963 333344343333434456789999
Q ss_pred ecccCCHHHH---HhhhCCCCccccCCccc---ceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhh
Q 000991 452 MSATLNAELF---SSYFGGAPMLHIPGFTY---PVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1197)
Q Consensus 452 mSATl~~~~f---~~yf~~~pvi~i~gr~~---PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1197)
||||++.+.. ..|+.+...+.+..... .+...+..
T Consensus 216 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 256 (410)
T 2j0s_A 216 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVA--------------------------------------- 256 (410)
T ss_dssp EESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEE---------------------------------------
T ss_pred EEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEE---------------------------------------
Confidence 9999976432 22332211111111000 00111000
Q ss_pred hhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCC
Q 000991 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1197)
Q Consensus 526 ~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 605 (1197)
.. ..+.....+..++.....+++||||+++++++.+++.|...
T Consensus 257 ----------------------------~~----~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----- 299 (410)
T 2j0s_A 257 ----------------------------VE----REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----- 299 (410)
T ss_dssp ----------------------------ES----STTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT-----
T ss_pred ----------------------------eC----cHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC-----
Confidence 00 00011123344444445679999999999999999999876
Q ss_pred CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhh
Q 000991 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1197)
Q Consensus 606 ~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas 685 (1197)
++.+..+||+++..+|..+++.|++|..+|||||+++++|||+|++++||+++.|. |..+
T Consensus 300 --~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~------------------s~~~ 359 (410)
T 2j0s_A 300 --NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN------------------NREL 359 (410)
T ss_dssp --TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCS------------------SHHH
T ss_pred --CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCC------------------CHHH
Confidence 55688999999999999999999999999999999999999999999999977665 7789
Q ss_pred HHhhhcccCCC-CCCeEEEeccccchh
Q 000991 686 ARQRRGRAGRV-QPGECYHLYPRYVYD 711 (1197)
Q Consensus 686 ~~QR~GRAGR~-~~G~cy~Lys~~~~~ 711 (1197)
|.||+|||||. ++|.|+.+++.....
T Consensus 360 ~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 360 YIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp HHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred HHHhcccccCCCCceEEEEEecHHHHH
Confidence 99999999999 579999999887654
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.3e-35 Score=372.22 Aligned_cols=417 Identities=17% Similarity=0.219 Sum_probs=214.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh---CCc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER---GEK 373 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~---g~~ 373 (1197)
...+.+|.++++.+.+++++||++|||||||+++.+++++.+.....+..++++|++|+++|+.|+++.+.+.. +..
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 91 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYR 91 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCce
Confidence 45678899999999999999999999999999999999987765433333578888899999999999887765 333
Q ss_pred ccceeeeE---eeeccccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHH---HHHHcc--c
Q 000991 374 LGESVGYK---VRLEGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIV---LKELLP--R 443 (1197)
Q Consensus 374 lg~~VGy~---ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~l---Lr~ll~--~ 443 (1197)
++..+|-. ..... ...+++|+|||||+|++.+..+. .+.++++|||||||+..-...+...+ +...+. .
T Consensus 92 v~~~~g~~~~~~~~~~-~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~ 170 (696)
T 2ykg_A 92 VTGISGATAENVPVEQ-IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSS 170 (696)
T ss_dssp EEEECSSSCSSSCHHH-HHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCccccccHHH-hccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccC
Confidence 33333311 00000 11357999999999999988764 47889999999999865444433332 222111 2
Q ss_pred CccceEEEecccCC-------HHHHHhhhC-----CCCccccCCc--------c-cceee----------eeh-------
Q 000991 444 RPELRLILMSATLN-------AELFSSYFG-----GAPMLHIPGF--------T-YPVRA----------YFL------- 485 (1197)
Q Consensus 444 r~~lklIlmSATl~-------~~~f~~yf~-----~~pvi~i~gr--------~-~PV~~----------~yl------- 485 (1197)
.+..++|+||||+. .+.+..++. +.+++..... . .|... .|.
T Consensus 171 ~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~ 250 (696)
T 2ykg_A 171 GPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 250 (696)
T ss_dssp SCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHH
Confidence 36789999999996 333322221 1111111000 0 01000 000
Q ss_pred HhHHHHhhhccCcccccc-----cchhhhh--HHH---------------------------H-------HHHHHH-Hhh
Q 000991 486 ENILEMTRYRLNTYNQID-----DYGQEKS--WKM---------------------------Q-------KQALAL-RKR 523 (1197)
Q Consensus 486 edi~~l~~~~l~~~~~i~-----~~~~e~~--~~~---------------------------~-------~~~~~~-~~~ 523 (1197)
.++..+....+.....+. .++.... |.. . ...... ...
T Consensus 251 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~ 330 (696)
T 2ykg_A 251 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 330 (696)
T ss_dssp HHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhh
Confidence 111122211111100000 0000000 000 0 000000 000
Q ss_pred hhhhHHHHHHHHHhhhhcchhhhhhh----------ccccC--C--CCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHH
Q 000991 524 KSSIASAVEDALEAADFREYSVQTQQ----------SLSCW--N--PDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD 589 (1197)
Q Consensus 524 ~~~~~~~ve~~l~~~~~~~~~~~~~~----------~l~~~--~--~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~e 589 (1197)
.......+.+.+.............. .+... . ........+..++.........+++|||++++.+
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~ 410 (696)
T 2ykg_A 331 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 410 (696)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHH
Confidence 00000001111100000000000000 00000 0 0111222233333333333467899999999999
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEec--------cCCCCHHHHHHhcCCCCC-CceEEEEeecccccccccCCEEEEEeCC
Q 000991 590 INSLKDQLQAHPLLGDPSRVLLLAC--------HGSMASSEQRLIFDKPED-GVRKIVLATNMAETSITINDVVFVIDCG 660 (1197)
Q Consensus 590 i~~l~~~L~~~~~~~~~~~~~I~~l--------Hs~L~~~er~~v~~~f~~-G~~kVLVATniaEtGIdIPdV~~VId~G 660 (1197)
++.+++.|...+.+. .+.+..+ ||+|+.++|+.+++.|++ |.++|||||+++++|||||+|++||+
T Consensus 411 ~~~l~~~L~~~~~~~---~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~-- 485 (696)
T 2ykg_A 411 VDALKNWIEGNPKLS---FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL-- 485 (696)
T ss_dssp HHHHHHHHHHCTTCC---SCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE--
T ss_pred HHHHHHHHHhCCCcc---ccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE--
Confidence 999999999863221 2445555 679999999999999998 99999999999999999999999999
Q ss_pred CCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccch----------hhhhhcCCccccccchhhhh
Q 000991 661 KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVY----------DAFADYQLPELLRTPLQSLC 730 (1197)
Q Consensus 661 ~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~----------~~l~~~~~PEIlr~~L~~l~ 730 (1197)
||++.+...| .||+|| ||.++|.||.|+++... +.+.+...||+.+.+++.++
T Consensus 486 ------~d~p~s~~~~----------~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 548 (696)
T 2ykg_A 486 ------YEYVGNVIKM----------IQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFR 548 (696)
T ss_dssp ------ESCC--CCCC--------------------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ------eCCCCCHHHH----------HHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 5555555544 499999 99999999999998766 44556677777777777776
Q ss_pred HHhhhc
Q 000991 731 LQIKSL 736 (1197)
Q Consensus 731 L~lk~l 736 (1197)
.+++.+
T Consensus 549 ~~i~~~ 554 (696)
T 2ykg_A 549 EKILHI 554 (696)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-34 Score=338.97 Aligned_cols=314 Identities=17% Similarity=0.162 Sum_probs=225.5
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccce
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES 377 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~ 377 (1197)
..+.+|.++++.+.+++++++++|||+|||+++..++++.+.. .....+++++.|+++|+.|+++.+........+..
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~--~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 107 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP--VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 107 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC--CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCC
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc--cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeE
Confidence 3677888899999999999999999999999999998876532 12234677777999999999998877653322333
Q ss_pred eeeEeeec-------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceE
Q 000991 378 VGYKVRLE-------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1197)
Q Consensus 378 VGy~ir~e-------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lkl 449 (1197)
++.-.... ......++|+|+||+.|+..+.... .+.++++|||||||...-..++...+.+.+....++.++
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (391)
T 1xti_A 108 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQV 187 (391)
T ss_dssp EEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEE
T ss_pred EEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceE
Confidence 33211111 0112346999999999999887665 688999999999997533345544444433334468899
Q ss_pred EEecccCCHH---HHHhhhCCCCccccCCcc----cceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHh
Q 000991 450 ILMSATLNAE---LFSSYFGGAPMLHIPGFT----YPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRK 522 (1197)
Q Consensus 450 IlmSATl~~~---~f~~yf~~~pvi~i~gr~----~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~ 522 (1197)
|+||||++.. .+..++.....+.+.... ..+..++..
T Consensus 188 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 231 (391)
T 1xti_A 188 MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVK------------------------------------ 231 (391)
T ss_dssp EEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEE------------------------------------
T ss_pred EEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEE------------------------------------
Confidence 9999999532 334444432222221110 001111100
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCC
Q 000991 523 RKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPL 602 (1197)
Q Consensus 523 ~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~ 602 (1197)
.........+..++.....+++|||++++++++.+++.|...
T Consensus 232 ------------------------------------~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~-- 273 (391)
T 1xti_A 232 ------------------------------------LKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-- 273 (391)
T ss_dssp ------------------------------------CCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT--
T ss_pred ------------------------------------cCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC--
Confidence 000001122333444456789999999999999999999876
Q ss_pred CCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccC
Q 000991 603 LGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWIS 682 (1197)
Q Consensus 603 ~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iS 682 (1197)
++.+..+||+++.++|..+++.|++|..+|||||+++++|||+|++++||+++.|. |
T Consensus 274 -----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~------------------s 330 (391)
T 1xti_A 274 -----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE------------------D 330 (391)
T ss_dssp -----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCS------------------S
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCC------------------C
Confidence 56688999999999999999999999999999999999999999999999977665 7
Q ss_pred HhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 683 KAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 683 kas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
..+|.||+|||||.+ +|.|+.+++....
T Consensus 331 ~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 331 SDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp HHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred HHHHHHhcccccCCCCceEEEEEEcccch
Confidence 889999999999995 7999999986543
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=362.74 Aligned_cols=323 Identities=14% Similarity=0.172 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 298 PSYKERDALLKAISEN--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~--~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
..+.+|.+++..+..+ ++++++||||||||+++.+++++.+... ....+++|++|+|+||.|+++++........+
T Consensus 114 ~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp SCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 3455667777777775 9999999999999999999998766432 22335777779999999999988776544333
Q ss_pred ceeeeEeeecc---ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEE
Q 000991 376 ESVGYKVRLEG---MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 376 ~~VGy~ir~e~---~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
..+++.+.... ......+|+|+|||.|++.+.... .+.++++|||||+|+..-...+...+........++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i 271 (479)
T 3fmp_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 271 (479)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEE
T ss_pred ceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEE
Confidence 44444433222 222356899999999999987654 4589999999999964222344444444444455678999
Q ss_pred EecccCCHH--HHHh-hhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhh
Q 000991 451 LMSATLNAE--LFSS-YFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1197)
Q Consensus 451 lmSATl~~~--~f~~-yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~ 527 (1197)
+||||++.+ .+.. ++.....+.+.......
T Consensus 272 ~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------------------------------- 304 (479)
T 3fmp_B 272 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETL----------------------------------------------- 304 (479)
T ss_dssp EEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------------------------
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEeccccccCc-----------------------------------------------
Confidence 999999764 2322 22211111111000000
Q ss_pred HHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCC
Q 000991 528 ASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPS 607 (1197)
Q Consensus 528 ~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~ 607 (1197)
..+.+.+..... .......+..++.....+++||||+++..++.+++.|...
T Consensus 305 -~~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~------- 356 (479)
T 3fmp_B 305 -DTIKQYYVLCSS--------------------RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE------- 356 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCceEEEEEeCC--------------------HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC-------
Confidence 000000000000 0001122344444455679999999999999999999875
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHH
Q 000991 608 RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAAR 687 (1197)
Q Consensus 608 ~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~ 687 (1197)
++.+..+||+++..+|..+++.|++|..+|||||+++++|||+|+|++||++++|.... .|.|..+|.
T Consensus 357 ~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~------------~~~s~~~~~ 424 (479)
T 3fmp_B 357 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD------------GNPDNETYL 424 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc------------cCCCHHHHH
Confidence 56789999999999999999999999999999999999999999999999977664222 134667889
Q ss_pred hhhcccCCCC-CCeEEEeccccc
Q 000991 688 QRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 688 QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
||+|||||.+ +|.|+.+|+...
T Consensus 425 Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 425 HRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -----------------------
T ss_pred HHhcccccCCCCceEEEEEcCcc
Confidence 9999999985 699999998654
No 24
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=374.82 Aligned_cols=372 Identities=21% Similarity=0.212 Sum_probs=241.3
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
.+..+.+|.+++..+.++++++|+||||||||+++..+++..+. . ..+++|++|+++|+.|+++++...++ .+|
T Consensus 84 ~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---~--g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vg 157 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---N--KQRVIYTSPIKALSNQKYRELLAEFG-DVG 157 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHHHHHHHS-CEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---c--CCeEEEECChHHHHHHHHHHHHHHhC-CEE
Confidence 35578899999999999999999999999999999877776542 2 35788888999999999999998887 333
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCC-ChhHHHHHHHHHcccCccceEEEec
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGM-NEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~-~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
...| +.....+++|+||||++|.+++..+. .+.++++|||||||...- .-......+-.. ..++.++|+||
T Consensus 158 lltG-----d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~--l~~~~~il~LS 230 (1010)
T 2xgj_A 158 LMTG-----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL--LPDKVRYVFLS 230 (1010)
T ss_dssp EECS-----SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH--SCTTCEEEEEE
T ss_pred EEeC-----CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh--cCCCCeEEEEc
Confidence 3333 22334578999999999999887664 789999999999995311 112222111112 24678999999
Q ss_pred ccC-CHHHHHhhhC-----CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhh
Q 000991 454 ATL-NAELFSSYFG-----GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSI 527 (1197)
Q Consensus 454 ATl-~~~~f~~yf~-----~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~ 527 (1197)
||+ |...|++|++ .+.++..+++..|+..++.....+......... ..+.... + .... ..+
T Consensus 231 ATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~---~~~~~~~-~--~~~~-------~~l 297 (1010)
T 2xgj_A 231 ATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEK---STFREEN-F--QKAM-------ASI 297 (1010)
T ss_dssp CCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTT---CCBCHHH-H--HHHH-------HTC
T ss_pred CCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccc---cccchHH-H--HHHH-------HHH
Confidence 999 7888999986 345566677778877765431000000000000 0000000 0 0000 000
Q ss_pred HHHHHHHHHhhhhcchhhhhhhccccCC-CCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCC
Q 000991 528 ASAVEDALEAADFREYSVQTQQSLSCWN-PDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDP 606 (1197)
Q Consensus 528 ~~~ve~~l~~~~~~~~~~~~~~~l~~~~-~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~ 606 (1197)
.....+........+.... ..... ....+...+..++..+. ....+++|||++++..++.+++.|.........
T Consensus 298 ~~~~~~~~~~~~~~g~~~~----~~k~~~~~~~~~~~l~~l~~~l~-~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~ 372 (1010)
T 2xgj_A 298 SNQIGDDPNSTDSRGKKGQ----TYKGGSAKGDAKGDIYKIVKMIW-KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 372 (1010)
T ss_dssp C----------------------------------CHHHHHHHHHH-HHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHH
T ss_pred hhhhccccccccccccccc----ccccccccccchHHHHHHHHHHH-hcCCCCEEEEECCHHHHHHHHHHHHhCCCCChH
Confidence 0000000000000000000 00000 00000223344444443 334569999999999999999998764221100
Q ss_pred --------------------------------CceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEE
Q 000991 607 --------------------------------SRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVV 654 (1197)
Q Consensus 607 --------------------------------~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~ 654 (1197)
....|..|||+|++.+|+.+++.|++|.++|||||+++++|||+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 012388999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEecccc
Q 000991 655 FVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRY 708 (1197)
Q Consensus 655 ~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~ 708 (1197)
+||+. . ..||... ..|+|.++|.||+|||||.| .|.||.+++..
T Consensus 453 vVI~~-~---~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 453 VVFTS-V---RKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEESC-S---EEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred EEEeC-C---cccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 99982 2 2255332 35789999999999999997 49999999865
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.6e-34 Score=355.71 Aligned_cols=326 Identities=17% Similarity=0.201 Sum_probs=219.8
Q ss_pred CCHHHHHHHHHHHH--cCCeEEEEecCCChHHHHHHHHHHHHHHHHcc--CCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 298 PSYKERDALLKAIS--ENQVVVVSGETGCGKTTQLPQYILESETEAAR--GAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~--~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~--g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
..+.+|.++++.+. ++++++++||||||||+++.+++++.+..... ....+++|++|+|+||.|+++++....+..
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~ 173 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 173 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 35667778887777 67899999999999999999999998875431 123467777899999999999998764321
Q ss_pred cc----ceeeeE------eeeccccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCC--Chh---HHHHH
Q 000991 374 LG----ESVGYK------VRLEGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGM--NED---FLLIV 436 (1197)
Q Consensus 374 lg----~~VGy~------ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~--~~D---~Ll~l 436 (1197)
.+ ..+... ..........++|+|||||.|++.+.... .+.++++|||||||+..- ..+ .+...
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~ 253 (563)
T 3i5x_A 174 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 253 (563)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred cccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHh
Confidence 11 111100 00001112367999999999998886542 688899999999995321 112 22223
Q ss_pred HHHHcc-cCccceEEEecccCCH--HHHHhhhCCCCc-cccCCcc-------cceeeeehHhHHHHhhhccCcccccccc
Q 000991 437 LKELLP-RRPELRLILMSATLNA--ELFSSYFGGAPM-LHIPGFT-------YPVRAYFLENILEMTRYRLNTYNQIDDY 505 (1197)
Q Consensus 437 Lr~ll~-~r~~lklIlmSATl~~--~~f~~yf~~~pv-i~i~gr~-------~PV~~~yledi~~l~~~~l~~~~~i~~~ 505 (1197)
+..... ..++.++|+||||++. ..+..++...+. +.+.... ..+...+.. .
T Consensus 254 l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--- 315 (563)
T 3i5x_A 254 LNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI---------------S--- 315 (563)
T ss_dssp HHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE---------------E---
T ss_pred hhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE---------------C---
Confidence 333222 2357899999999964 344444433221 1110000 000000000 0
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeC
Q 000991 506 GQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMT 585 (1197)
Q Consensus 506 ~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~ 585 (1197)
.. ....+ ...+..+...+......+++||||+
T Consensus 316 -~~------------------~~~~~-----------------------------~~~~~~l~~~~~~~~~~~~~iVF~~ 347 (563)
T 3i5x_A 316 -EK------------------FANSI-----------------------------FAAVEHIKKQIKERDSNYKAIIFAP 347 (563)
T ss_dssp -SS------------------TTHHH-----------------------------HHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred -ch------------------hHhhH-----------------------------HHHHHHHHHHHhhcCCCCcEEEEcC
Confidence 00 00000 0011122233333356789999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcc
Q 000991 586 GWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKET 665 (1197)
Q Consensus 586 ~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~ 665 (1197)
++..++.+++.|.... ..++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+++.|.
T Consensus 348 s~~~~~~l~~~L~~~~----~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~-- 421 (563)
T 3i5x_A 348 TVKFTSFLCSILKNEF----KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPS-- 421 (563)
T ss_dssp CHHHHHHHHHHHHHHH----TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCS--
T ss_pred cHHHHHHHHHHHHHhc----cCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCC--
Confidence 9999999999998641 1145689999999999999999999999999999999999999999999999966665
Q ss_pred cccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 666 SYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 666 ~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
|..+|.||+|||||.+ +|.|+.+++.....
T Consensus 422 ----------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 422 ----------------ELANYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp ----------------STTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred ----------------chhhhhhhcCccccCCCCceEEEEEchhHHH
Confidence 5668889999999996 79999999876543
No 26
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2e-35 Score=366.13 Aligned_cols=302 Identities=17% Similarity=0.194 Sum_probs=226.0
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
+..+|++.+ + ++.+.++++++++||||||||+++.+++++.+... ..+++|++|||+||.|+++.+.
T Consensus 170 ~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----~~~vLvl~PtreLa~Qi~~~l~------ 236 (618)
T 2whx_A 170 RIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR----RLRTLILAPTRVVAAEMEEALR------ 236 (618)
T ss_dssp CCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHTT------
T ss_pred ccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----CCeEEEEcChHHHHHHHHHHhc------
Confidence 677888755 3 88889999999999999999999999999887642 2467777799999999998764
Q ss_pred ccceeeeEeee-ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 374 LGESVGYKVRL-EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 374 lg~~VGy~ir~-e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
+..++|+++. +....++..+.++|.+.+.+.+..++.+.++++|||||||+++...+..+..+...+. +++.++|+|
T Consensus 237 -~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~~~~q~il~ 314 (618)
T 2whx_A 237 -GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-MGEAAAIFM 314 (618)
T ss_dssp -TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEE
T ss_pred -CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-ccCccEEEE
Confidence 3446666553 3344566788999999999999988899999999999999875555545555544432 267899999
Q ss_pred cccCCHHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHH
Q 000991 453 SATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVE 532 (1197)
Q Consensus 453 SATl~~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve 532 (1197)
|||++.. ...++.. ....+++...+.. .
T Consensus 315 SAT~~~~-~~~~~~~------~~~~~~v~~~~~~-------------~-------------------------------- 342 (618)
T 2whx_A 315 TATPPGS-TDPFPQS------NSPIEDIEREIPE-------------R-------------------------------- 342 (618)
T ss_dssp CSSCTTC-CCSSCCC------SSCEEEEECCCCS-------------S--------------------------------
T ss_pred ECCCchh-hhhhhcc------CCceeeecccCCH-------------H--------------------------------
Confidence 9999644 1122211 1111111111000 0
Q ss_pred HHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEE
Q 000991 533 DALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLL 612 (1197)
Q Consensus 533 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~ 612 (1197)
.+ . .++..+.+ ..+++||||+++++++.+++.|... ++.+.
T Consensus 343 --------------------~~-------~---~ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~-------g~~v~ 383 (618)
T 2whx_A 343 --------------------SW-------N---TGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKS-------GKRVI 383 (618)
T ss_dssp --------------------CC-------S---SSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHT-------TCCEE
T ss_pred --------------------HH-------H---HHHHHHHh--CCCCEEEEECChhHHHHHHHHHHHc-------CCcEE
Confidence 00 0 00111222 3679999999999999999999986 55688
Q ss_pred eccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccc--cCCCCCCCccccccCHhhHHhhh
Q 000991 613 ACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSY--DALNNTPCLLPSWISKAAARQRR 690 (1197)
Q Consensus 613 ~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~y--D~~~~~~~l~~~~iSkas~~QR~ 690 (1197)
.+||. +|.++++.|++|+++|||||+++++||||| |++|||+|+++.+.+ +...++......|+|.++|.||+
T Consensus 384 ~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~ 458 (618)
T 2whx_A 384 QLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRR 458 (618)
T ss_dssp EECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHH
T ss_pred EEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhc
Confidence 99984 788899999999999999999999999997 999999999776554 33334445556789999999999
Q ss_pred cccCCCC--CCeEEEecc
Q 000991 691 GRAGRVQ--PGECYHLYP 706 (1197)
Q Consensus 691 GRAGR~~--~G~cy~Lys 706 (1197)
|||||.+ +|.||.+++
T Consensus 459 GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 459 GRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp TTSSCCTTCCCEEEEECS
T ss_pred cccCCCCCCCCeEEEEcc
Confidence 9999995 899999997
No 27
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.7e-34 Score=356.21 Aligned_cols=314 Identities=20% Similarity=0.192 Sum_probs=217.4
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
.++++++++||||||||+.+++.+++ . ..+ ++++|||+||.|+++++.+ .|..++..+|..........+
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~----~---~~g--l~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr 222 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFS----A---KSG--VYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGK 222 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH----S---SSE--EEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHh----c---CCe--EEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCc
Confidence 47899999999999999955555443 2 222 5557999999999999855 466666555543332222233
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC-ccceEEEecccCC-HHHHHhhhCCC
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR-PELRLILMSATLN-AELFSSYFGGA 468 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r-~~lklIlmSATl~-~~~f~~yf~~~ 468 (1197)
..+++++|++++. ....+++|||||+|++ .+.++...+...+.... ++++++++|||.+ ...+....+.
T Consensus 223 ~~~il~~T~e~~~-------l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~- 293 (677)
T 3rc3_A 223 QASHVSCTVEMCS-------VTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGE- 293 (677)
T ss_dssp CCSEEEEEGGGCC-------SSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTC-
T ss_pred ccceeEecHhHhh-------hcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCC-
Confidence 4789999986542 4678899999999976 44455444444444444 6789999999952 2222222211
Q ss_pred CccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhh
Q 000991 469 PMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQ 548 (1197)
Q Consensus 469 pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~ 548 (1197)
.+.+..+.. ..+ .. +
T Consensus 294 --------~~~v~~~~r----------~~~---l~---------------------------------------~----- 308 (677)
T 3rc3_A 294 --------EVEVRDYKR----------LTP---IS---------------------------------------V----- 308 (677)
T ss_dssp --------CEEEEECCC----------SSC---EE---------------------------------------E-----
T ss_pred --------ceEEEEeee----------cch---HH---------------------------------------H-----
Confidence 111111100 000 00 0
Q ss_pred hccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcC
Q 000991 549 QSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFD 628 (1197)
Q Consensus 549 ~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~ 628 (1197)
....+ . .+.....| .+||++++++++.+++.|... ++.+.++||+|++++|..+++
T Consensus 309 ------~~~~l--~--------~l~~~~~g-~iIf~~s~~~ie~la~~L~~~-------g~~v~~lHG~L~~~~R~~~~~ 364 (677)
T 3rc3_A 309 ------LDHAL--E--------SLDNLRPG-DCIVCFSKNDIYSVSRQIEIR-------GLESAVIYGSLPPGTKLAQAK 364 (677)
T ss_dssp ------CSSCC--C--------SGGGCCTT-EEEECSSHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHH
T ss_pred ------HHHHH--H--------HHHhcCCC-CEEEEcCHHHHHHHHHHHHhc-------CCCeeeeeccCCHHHHHHHHH
Confidence 00000 0 00111233 477899999999999999975 566899999999999999999
Q ss_pred CCCC--CceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC----CCeEE
Q 000991 629 KPED--GVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ----PGECY 702 (1197)
Q Consensus 629 ~f~~--G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~----~G~cy 702 (1197)
.|++ |.++|||||+++++|||| +|++||++|.+|. .||+..+.. ..|+|.++|.||+|||||.+ +|.||
T Consensus 365 ~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~~---~~p~s~~~~~QR~GRAGR~g~~g~~G~v~ 439 (677)
T 3rc3_A 365 KFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGERE---LEPITTSQALQIAGRAGRFSSRFKEGEVT 439 (677)
T ss_dssp HHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEE
T ss_pred HHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCccc---cccCCHHHHHHHhcCCCCCCCCCCCEEEE
Confidence 9998 999999999999999999 8999999999986 666653332 56899999999999999997 58999
Q ss_pred Eecccc--chhhhhhcCCccccccchhhhhHHhhhcC
Q 000991 703 HLYPRY--VYDAFADYQLPELLRTPLQSLCLQIKSLQ 737 (1197)
Q Consensus 703 ~Lys~~--~~~~l~~~~~PEIlr~~L~~l~L~lk~l~ 737 (1197)
.+++.+ .+..+.....|+|.+..+....++++.++
T Consensus 440 ~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 440 TMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp ESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred EEecchHHHHHHHHhcCcchhhhccCCChHHHHHHHh
Confidence 999877 56678889999999988888888777654
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-33 Score=343.50 Aligned_cols=395 Identities=14% Similarity=0.135 Sum_probs=184.5
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh---CC
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER---GE 372 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~---g~ 372 (1197)
.+..+.+|.++++.+.+++++++++|||||||+++..++++.+.....+...+++|++|+++|+.|+++.+...+ +.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 355677889999999999999999999999999999999887754332224567777799999999999987765 44
Q ss_pred cccceeeeEeeecc--ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcc-----c
Q 000991 373 KLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-----R 443 (1197)
Q Consensus 373 ~lg~~VGy~ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-----~ 443 (1197)
.++...|....... ....+++|+|+|||+|.+.+.... .+.++++|||||||...-.. ....++..++. .
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS-HHHHHHHHHHHHHHCC-
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc-hHHHHHHHHHHhhhccc
Confidence 44433342211110 011347899999999999887765 58899999999999753332 23333333322 2
Q ss_pred CccceEEEecccCCH---HHHHhh----------hCCCCccccCCc---------ccceeee----------e---h---
Q 000991 444 RPELRLILMSATLNA---ELFSSY----------FGGAPMLHIPGF---------TYPVRAY----------F---L--- 485 (1197)
Q Consensus 444 r~~lklIlmSATl~~---~~f~~y----------f~~~pvi~i~gr---------~~PV~~~----------y---l--- 485 (1197)
.+..++|+||||+.. ..+.+| ++. ..+..... .-|.... + +
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCC-eEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 467899999999932 222222 221 11111100 0000000 0 0
Q ss_pred -HhHHHHhhhccC--cccc--cccchhh--hhHHHH--HH------------------HH-------HH--------Hhh
Q 000991 486 -ENILEMTRYRLN--TYNQ--IDDYGQE--KSWKMQ--KQ------------------AL-------AL--------RKR 523 (1197)
Q Consensus 486 -edi~~l~~~~l~--~~~~--i~~~~~e--~~~~~~--~~------------------~~-------~~--------~~~ 523 (1197)
+.+.......+. .... ...++.. ..|... +. .. .. ...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000000000000 0000 0000000 000000 00 00 00 000
Q ss_pred hhhhHHHHHHHHHhhhhcchhhhh--------------hhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHH
Q 000991 524 KSSIASAVEDALEAADFREYSVQT--------------QQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD 589 (1197)
Q Consensus 524 ~~~~~~~ve~~l~~~~~~~~~~~~--------------~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~e 589 (1197)
.......+...+.......+.... ................+..++.........+++|||+++++.
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 000000111111100000000000 000000001111223333444444444667899999999999
Q ss_pred HHHHHHHHHcCCCCCC-----CCceEEEeccCCCCHHHHHHhcCCCCC-CceEEEEeecccccccccCCEEEEEeCCCCC
Q 000991 590 INSLKDQLQAHPLLGD-----PSRVLLLACHGSMASSEQRLIFDKPED-GVRKIVLATNMAETSITINDVVFVIDCGKAK 663 (1197)
Q Consensus 590 i~~l~~~L~~~~~~~~-----~~~~~I~~lHs~L~~~er~~v~~~f~~-G~~kVLVATniaEtGIdIPdV~~VId~G~~k 663 (1197)
++.+++.|...+.+.. ..+.....+||+|+.++|..+++.|++ |.++|||||+++++|||+|+|++||+++.|.
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 482 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 482 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCS
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 9999999987521110 112345567899999999999999999 9999999999999999999999999955554
Q ss_pred cccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchh
Q 000991 664 ETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1197)
Q Consensus 664 ~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~ 711 (1197)
|...|.||+|| ||.++|.||.|+++...+
T Consensus 483 ------------------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 483 ------------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp ------------------CHHHHHHC---------CCEEEEESCHHHH
T ss_pred ------------------CHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 77788999999 999999999999886654
No 29
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.6e-35 Score=344.64 Aligned_cols=319 Identities=17% Similarity=0.238 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC---Ccc
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG---EKL 374 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g---~~l 374 (1197)
..+.+|.+++..+.+++++++++|||||||+++.+++++.+... ....++++++|+++|+.|+++++..... ..+
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 120 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLAPTRELALQIQKVVMALAFHMDIKV 120 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeE
Confidence 45667788888888999999999999999999999998765432 2334566777999999999998876542 222
Q ss_pred cceeeeEeeecc-ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEe
Q 000991 375 GESVGYKVRLEG-MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILM 452 (1197)
Q Consensus 375 g~~VGy~ir~e~-~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlm 452 (1197)
+..+|.....+. ....+++|+|+||+.|++.+.... .+.++++|||||||+. ...++...+.+.+....++.++|+|
T Consensus 121 ~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (394)
T 1fuu_A 121 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM-LSSGFKEQIYQIFTLLPPTTQVVLL 199 (394)
T ss_dssp EEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-HHTTCHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh-hCCCcHHHHHHHHHhCCCCceEEEE
Confidence 222221110000 011257899999999999887655 5788999999999962 1112222222222223467899999
Q ss_pred cccCCHH---HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHH
Q 000991 453 SATLNAE---LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIAS 529 (1197)
Q Consensus 453 SATl~~~---~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~ 529 (1197)
|||++.. .+..|+.+...+.+.....+.. .
T Consensus 200 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------------------------------------------ 232 (394)
T 1fuu_A 200 SATMPNDVLEVTTKFMRNPVRILVKKDELTLE-----G------------------------------------------ 232 (394)
T ss_dssp CSSCCHHHHHHHHHHCCSCEEEEECC------------------------------------------------------
T ss_pred EEecCHHHHHHHHHhcCCCeEEEecCccccCC-----C------------------------------------------
Confidence 9999653 3334443221111111000000 0
Q ss_pred HHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCce
Q 000991 530 AVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRV 609 (1197)
Q Consensus 530 ~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~ 609 (1197)
+......... . +.....+..++.....+++||||+++++++.+++.|... ++
T Consensus 233 -~~~~~~~~~~----------------~----~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~ 284 (394)
T 1fuu_A 233 -IKQFYVNVEE----------------E----EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND-------KF 284 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ceEEEEEcCc----------------h----hhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc-------CC
Confidence 0000000000 0 000112233333345679999999999999999999875 56
Q ss_pred EEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhh
Q 000991 610 LLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQR 689 (1197)
Q Consensus 610 ~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR 689 (1197)
.+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++.|. |..+|.||
T Consensus 285 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~------------------s~~~~~Qr 346 (394)
T 1fuu_A 285 TVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA------------------NKENYIHR 346 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC------------------CHHHHHHH
Confidence 788999999999999999999999999999999999999999999999966554 66788899
Q ss_pred hcccCCC-CCCeEEEeccccchhh
Q 000991 690 RGRAGRV-QPGECYHLYPRYVYDA 712 (1197)
Q Consensus 690 ~GRAGR~-~~G~cy~Lys~~~~~~ 712 (1197)
+|||||. ++|.|+.+++....+.
T Consensus 347 ~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 347 IGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp ------------------------
T ss_pred cCcccCCCCCceEEEEEchhHHHH
Confidence 9999999 4799999998876543
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-34 Score=326.97 Aligned_cols=301 Identities=19% Similarity=0.212 Sum_probs=210.3
Q ss_pred HHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 292 EFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 292 ~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
+...--..+.+|.++++.+.+++++++++|||||||+++..++++. + .++++++|+++|+.|+++++.+...
T Consensus 10 ~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~--~~~liv~P~~~L~~q~~~~~~~~~~ 81 (337)
T 2z0m_A 10 REMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------G--MKSLVVTPTRELTRQVASHIRDIGR 81 (337)
T ss_dssp HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------T--CCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------c--CCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 3334445678889999999999999999999999999999888762 2 2466666999999999999876432
Q ss_pred CcccceeeeEeeec-----cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cC
Q 000991 372 EKLGESVGYKVRLE-----GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RR 444 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e-----~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r 444 (1197)
..+..++...... .....+++|+|+||+.|++.+.... .+.++++|||||||... ...+.. .++.++. ..
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~-~~~~~~-~~~~~~~~~~ 158 (337)
T 2z0m_A 82 -YMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMF-EMGFID-DIKIILAQTS 158 (337)
T ss_dssp -TSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHH-HTTCHH-HHHHHHHHCT
T ss_pred -hcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhh-ccccHH-HHHHHHhhCC
Confidence 2222232111110 0111357999999999999887654 57889999999999521 111111 1222222 33
Q ss_pred ccceEEEecccCCHH---HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHH
Q 000991 445 PELRLILMSATLNAE---LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALR 521 (1197)
Q Consensus 445 ~~lklIlmSATl~~~---~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~ 521 (1197)
+..++++||||++.. .+..|+.+...+........+...+.. ..
T Consensus 159 ~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~------------------ 205 (337)
T 2z0m_A 159 NRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVH---------------VK------------------ 205 (337)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEE---------------CS------------------
T ss_pred cccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEE---------------eC------------------
Confidence 467789999999654 345555433222111111111111100 00
Q ss_pred hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCC
Q 000991 522 KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP 601 (1197)
Q Consensus 522 ~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~ 601 (1197)
. +.. ..+ ..+.....+++|||+++.++++.+++.|..
T Consensus 206 -----------------------------------~--~~~---~~~-~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-- 242 (337)
T 2z0m_A 206 -----------------------------------D--DWR---SKV-QALRENKDKGVIVFVRTRNRVAKLVRLFDN-- 242 (337)
T ss_dssp -----------------------------------S--SSH---HHH-HHHHTCCCSSEEEECSCHHHHHHHHTTCTT--
T ss_pred -----------------------------------h--HHH---HHH-HHHHhCCCCcEEEEEcCHHHHHHHHHHhhh--
Confidence 0 000 001 223345678999999999999999887762
Q ss_pred CCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcccccc
Q 000991 602 LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWI 681 (1197)
Q Consensus 602 ~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~i 681 (1197)
+..+||+++..+|..+++.|++|+.+|||||+++++|||+|++++||+++.|.
T Consensus 243 ---------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~------------------ 295 (337)
T 2z0m_A 243 ---------AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ------------------ 295 (337)
T ss_dssp ---------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS------------------
T ss_pred ---------hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC------------------
Confidence 67899999999999999999999999999999999999999999999966664
Q ss_pred CHhhHHhhhcccCCC-CCCeEEEecc
Q 000991 682 SKAAARQRRGRAGRV-QPGECYHLYP 706 (1197)
Q Consensus 682 Skas~~QR~GRAGR~-~~G~cy~Lys 706 (1197)
|..+|.||+|||||. ++|.|+.++.
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe
Confidence 778999999999999 5799999988
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-35 Score=356.94 Aligned_cols=338 Identities=16% Similarity=0.233 Sum_probs=207.6
Q ss_pred CHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc-cc
Q 000991 299 SYKERDALLKAISEN--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK-LG 375 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~--~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~-lg 375 (1197)
.+.+|.+++..+.++ +++++++|||||||+++.+++++.+... ....+++|++|+++|+.|+++++....+.. +.
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--VPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--CCCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 344566777777776 9999999999999999999999876432 234467777899999999999997765322 22
Q ss_pred ceeeeEeeeccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 376 ESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 376 ~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
..+++..........+++|+|+||+.|++.+.... .+.++++|||||||+......+...+.+......++.++|+|||
T Consensus 220 ~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 220 TAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp EEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 23333333333333468999999999999887665 68899999999999654323322222222222345789999999
Q ss_pred cCC--HHHHHhhhCCCC-ccccCCcccceee---eehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhH
Q 000991 455 TLN--AELFSSYFGGAP-MLHIPGFTYPVRA---YFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIA 528 (1197)
Q Consensus 455 Tl~--~~~f~~yf~~~p-vi~i~gr~~PV~~---~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 528 (1197)
|++ .+.+...+.+.+ .+.+....++... .+.. .
T Consensus 300 T~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------~----------------------- 338 (508)
T 3fho_A 300 TFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMD------------------C----------------------- 338 (508)
T ss_dssp CCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEE------------------C-----------------------
T ss_pred CCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEE------------------C-----------------------
Confidence 996 445555444322 2222222211110 0000 0
Q ss_pred HHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCc
Q 000991 529 SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSR 608 (1197)
Q Consensus 529 ~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~ 608 (1197)
.........+..++.....+++||||+++++++.+++.|... +
T Consensus 339 ------------------------------~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~-------~ 381 (508)
T 3fho_A 339 ------------------------------QSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD-------G 381 (508)
T ss_dssp --------------------------------CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT-------T
T ss_pred ------------------------------CchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC-------C
Confidence 000011122344444456789999999999999999999875 4
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHh
Q 000991 609 VLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQ 688 (1197)
Q Consensus 609 ~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~Q 688 (1197)
+.+..+||+++..+|+.+++.|++|..+|||||+++++|||+|++++||+++.|.... .+-|..+|.|
T Consensus 382 ~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~------------~~~s~~~~~Q 449 (508)
T 3fho_A 382 HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQA------------GRPDPQTYLH 449 (508)
T ss_dssp CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----------------CTHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCccc------------CCCCHHHHHH
Confidence 5688999999999999999999999999999999999999999999999977664211 1236779999
Q ss_pred hhcccCCCC-CCeEEEeccccc----hhhhhhcCCccccccchhh
Q 000991 689 RRGRAGRVQ-PGECYHLYPRYV----YDAFADYQLPELLRTPLQS 728 (1197)
Q Consensus 689 R~GRAGR~~-~G~cy~Lys~~~----~~~l~~~~~PEIlr~~L~~ 728 (1197)
|+|||||.+ +|.|+.+++... ...+.++...++.+.+..+
T Consensus 450 r~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 450 RIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp TTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred HhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 999999996 799999987432 2334555555555554433
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.9e-34 Score=350.59 Aligned_cols=309 Identities=20% Similarity=0.161 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
...|.++++.+.+++++++++|||+|||+++.++++.. ...+||+.|+++|+.|+++.+... |.......|
T Consensus 46 rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~~~L~~q~~~~l~~~-gi~~~~l~~ 116 (591)
T 2v1x_A 46 RPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPLISLMEDQLMVLKQL-GISATMLNA 116 (591)
T ss_dssp CTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSCHHHHHHHHHHHHHH-TCCEEECCS
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCHHHHHHHHHHHHHhc-CCcEEEEeC
Confidence 45688899999999999999999999999888887641 236777789999999999988664 544433333
Q ss_pred eEeeecc------c--cCCCceEEEEcchHHH------HHHhcCCCCCCccEEEEecCCCCC-----CChhHHHHHHHHH
Q 000991 380 YKVRLEG------M--KGRDTRLMFCTTGILL------RRLLVDRSLRGVTHVIVDEIHERG-----MNEDFLLIVLKEL 440 (1197)
Q Consensus 380 y~ir~e~------~--~~~~t~Ilv~Tpg~LL------r~L~~d~~L~~is~VIIDEaHeR~-----~~~D~Ll~lLr~l 440 (1197)
.....+. . .....+|+|+||++|. +.+.....+.++++|||||||+.+ ...++.. +..+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~--l~~l 194 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA--LGIL 194 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG--GGHH
T ss_pred CCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH--HHHH
Confidence 1111110 0 2457899999999774 333333357789999999999743 2222211 1122
Q ss_pred cccCccceEEEecccCCHH---HHHhhhCCCCccc-cCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHH
Q 000991 441 LPRRPELRLILMSATLNAE---LFSSYFGGAPMLH-IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQ 516 (1197)
Q Consensus 441 l~~r~~lklIlmSATl~~~---~f~~yf~~~pvi~-i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~ 516 (1197)
....|+.++|+||||++.. .+.++++...... ..+..-| ..+|. ....
T Consensus 195 ~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~~----------v~~~----------------- 246 (591)
T 2v1x_A 195 KRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-NLYYE----------VRQK----------------- 246 (591)
T ss_dssp HHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT-TEEEE----------EEEC-----------------
T ss_pred HHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc-ccEEE----------EEeC-----------------
Confidence 2345778999999999764 4555665332211 1111111 11110 0000
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHH
Q 000991 517 ALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQ 596 (1197)
Q Consensus 517 ~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~ 596 (1197)
.....+.+..++..+......+++||||+++++++.+++.
T Consensus 247 ----------------------------------------~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~ 286 (591)
T 2v1x_A 247 ----------------------------------------PSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVS 286 (591)
T ss_dssp ----------------------------------------CSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHH
T ss_pred ----------------------------------------CCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHH
Confidence 0000001112222222233567999999999999999999
Q ss_pred HHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCc
Q 000991 597 LQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCL 676 (1197)
Q Consensus 597 L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l 676 (1197)
|... ++.+.++||+|+.++|..+++.|+.|+.+|||||+++++|||+|+|++||+++.|+
T Consensus 287 L~~~-------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~------------- 346 (591)
T 2v1x_A 287 LQNL-------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSK------------- 346 (591)
T ss_dssp HHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCS-------------
T ss_pred HHHC-------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCC-------------
Confidence 9976 56799999999999999999999999999999999999999999999999988887
Q ss_pred cccccCHhhHHhhhcccCCCC-CCeEEEeccccchhh
Q 000991 677 LPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYDA 712 (1197)
Q Consensus 677 ~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~~ 712 (1197)
|..+|.||+|||||.| +|.|+.+|+..+...
T Consensus 347 -----s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 347 -----SMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp -----SHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred -----CHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 7889999999999995 799999998776554
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.5e-33 Score=348.79 Aligned_cols=324 Identities=18% Similarity=0.186 Sum_probs=218.0
Q ss_pred CHHHHHHHHHHHH--cCCeEEEEecCCChHHHHHHHHHHHHHHHHcc--CCceEEEecchHHHHHHHHHHHHHHHhCC--
Q 000991 299 SYKERDALLKAIS--ENQVVVVSGETGCGKTTQLPQYILESETEAAR--GAACSIICTQPRRISAMAVSERVAAERGE-- 372 (1197)
Q Consensus 299 i~~~q~~Il~~I~--~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~--g~~~~IivtqPrR~LA~qva~rVa~e~g~-- 372 (1197)
.+.+|.++++.+. .++++++++|||||||+++.+++++.+..... ....+++|++|+|+||.|+++.+......
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 5667778887777 68899999999999999999999998875421 22346777779999999999999876422
Q ss_pred --cccce---eeeE---eeeccccCCCceEEEEcchHHHHHHhcC--CCCCCccEEEEecCCCCCC--ChhHHHHHHHHH
Q 000991 373 --KLGES---VGYK---VRLEGMKGRDTRLMFCTTGILLRRLLVD--RSLRGVTHVIVDEIHERGM--NEDFLLIVLKEL 440 (1197)
Q Consensus 373 --~lg~~---VGy~---ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d--~~L~~is~VIIDEaHeR~~--~~D~Ll~lLr~l 440 (1197)
..... +|-. ..........++|+|+|||+|++.+... ..+..+++|||||||+..- ..+.+..++..+
T Consensus 124 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l 203 (579)
T 3sqw_A 124 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 203 (579)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred cccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHh
Confidence 11111 1100 0001111235799999999999888654 2688999999999996321 112222222222
Q ss_pred ---cc-cCccceEEEecccCCH--HHHHhhhCCCC-ccccCCcc-------cceeeeehHhHHHHhhhccCcccccccch
Q 000991 441 ---LP-RRPELRLILMSATLNA--ELFSSYFGGAP-MLHIPGFT-------YPVRAYFLENILEMTRYRLNTYNQIDDYG 506 (1197)
Q Consensus 441 ---l~-~r~~lklIlmSATl~~--~~f~~yf~~~p-vi~i~gr~-------~PV~~~yledi~~l~~~~l~~~~~i~~~~ 506 (1197)
.. ..++.++|+||||++. ..+...+-..+ .+.+.... ..+...+.. .
T Consensus 204 ~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------~ 264 (579)
T 3sqw_A 204 NEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI-------------------S 264 (579)
T ss_dssp HHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE-------------------E
T ss_pred hhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEE-------------------e
Confidence 21 2247899999999964 33333332222 11111000 000000000 0
Q ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCC
Q 000991 507 QEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTG 586 (1197)
Q Consensus 507 ~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~ 586 (1197)
... ... ....+..+...+......+++||||++
T Consensus 265 ~~~------------------~~~-----------------------------~~~~~~~l~~~~~~~~~~~~~iVF~~t 297 (579)
T 3sqw_A 265 EKF------------------ANS-----------------------------IFAAVEHIKKQIKERDSNYKAIIFAPT 297 (579)
T ss_dssp SST------------------THH-----------------------------HHHHHHHHHHHHHHTTTCCEEEEECSS
T ss_pred cch------------------hhh-----------------------------HHHHHHHHHHHHhhcCCCCcEEEECCc
Confidence 000 000 001111222333333567899999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCccc
Q 000991 587 WDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETS 666 (1197)
Q Consensus 587 ~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~ 666 (1197)
+..++.+++.|.... ..++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||+|+|++||+++.|.
T Consensus 298 ~~~~~~l~~~L~~~~----~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~--- 370 (579)
T 3sqw_A 298 VKFTSFLCSILKNEF----KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPS--- 370 (579)
T ss_dssp HHHHHHHHHHHHHHH----TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCS---
T ss_pred HHHHHHHHHHHHHhh----cCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCC---
Confidence 999999999998641 1145688999999999999999999999999999999999999999999999976665
Q ss_pred ccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 667 YDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 667 yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
|..+|.||+|||||.+ +|.|+.+++....
T Consensus 371 ---------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 371 ---------------ELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp ---------------STTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred ---------------CHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 5678889999999996 7999999987654
No 34
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.7e-33 Score=343.82 Aligned_cols=393 Identities=16% Similarity=0.179 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh---CCc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER---GEK 373 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~---g~~ 373 (1197)
+..+.+|.++++.+.+++++++++|||||||+++..++++.+.....+...+++|+.|+++|+.|+++.+...+ +..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 45677889999999999999999999999999999999987764332224567777799999999999887765 333
Q ss_pred ccceeeeEeeecc--ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcc----c--
Q 000991 374 LGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP----R-- 443 (1197)
Q Consensus 374 lg~~VGy~ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~----~-- 443 (1197)
++...|....... ....+++|+|+|||+|.+.+.... .+.++++|||||||+..-... ...++...+. .
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHHHHTSSCC
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHHhhhcccc
Confidence 3333332110000 011247899999999999887765 578899999999997543333 2232222222 1
Q ss_pred CccceEEEecccCCH----------HHHH---hhhCCCCccccCCc---------ccceeee----------ehHh---H
Q 000991 444 RPELRLILMSATLNA----------ELFS---SYFGGAPMLHIPGF---------TYPVRAY----------FLEN---I 488 (1197)
Q Consensus 444 r~~lklIlmSATl~~----------~~f~---~yf~~~pvi~i~gr---------~~PV~~~----------yled---i 488 (1197)
.+..++|+||||+.. +.+. ..++ .+.+..... ..|.... +... +
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 266899999999932 1111 2222 111111110 0011000 0000 0
Q ss_pred ----HHHhhhccCc---c--cccccchhhh--hHHHH--H------------------HHHHHHhh--------------
Q 000991 489 ----LEMTRYRLNT---Y--NQIDDYGQEK--SWKMQ--K------------------QALALRKR-------------- 523 (1197)
Q Consensus 489 ----~~l~~~~l~~---~--~~i~~~~~e~--~~~~~--~------------------~~~~~~~~-------------- 523 (1197)
..+....+.. . .....++... .|... . ........
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 0000000000 0 0000000000 00000 0 00000000
Q ss_pred -hhhhHHHHHHHHHhhhhcchhhhhh--------------hccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHH
Q 000991 524 -KSSIASAVEDALEAADFREYSVQTQ--------------QSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWD 588 (1197)
Q Consensus 524 -~~~~~~~ve~~l~~~~~~~~~~~~~--------------~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ 588 (1197)
.......+...+.......+..... ...............+..++.........+++|||+++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 0000000000000000000000000 0000000112233344455555555567799999999999
Q ss_pred HHHHHHHHHHcCCCCCC-----CCceEEEeccCCCCHHHHHHhcCCCCC-CceEEEEeecccccccccCCEEEEEeCCCC
Q 000991 589 DINSLKDQLQAHPLLGD-----PSRVLLLACHGSMASSEQRLIFDKPED-GVRKIVLATNMAETSITINDVVFVIDCGKA 662 (1197)
Q Consensus 589 ei~~l~~~L~~~~~~~~-----~~~~~I~~lHs~L~~~er~~v~~~f~~-G~~kVLVATniaEtGIdIPdV~~VId~G~~ 662 (1197)
.++.+++.|........ ..+.....+||+|+.++|..+++.|++ |.++|||||+++++|||+|+|++||+
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~---- 476 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL---- 476 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE----
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE----
Confidence 99999999987531110 112234566789999999999999999 99999999999999999999999999
Q ss_pred CcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccch
Q 000991 663 KETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVY 710 (1197)
Q Consensus 663 k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~ 710 (1197)
||++.+...|. ||+|| ||..+|.||.|+++...
T Consensus 477 ----~d~p~s~~~~~----------Qr~GR-gR~~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 477 ----YEYVGNVIKMI----------QTRGR-GRARDSKCFLLTSSADV 509 (555)
T ss_dssp ----ESCCSSCCCEE----------CSSCC-CTTTSCEEEEEESCHHH
T ss_pred ----eCCCCCHHHHH----------HhcCc-CcCCCceEEEEEcCCCH
Confidence 66666666555 99999 99999999999987654
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=359.21 Aligned_cols=392 Identities=15% Similarity=0.191 Sum_probs=216.3
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-cCCceEEEecchHHHHHHHH-HHHHHHHhC
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-RGAACSIICTQPRRISAMAV-SERVAAERG 371 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-~g~~~~IivtqPrR~LA~qv-a~rVa~e~g 371 (1197)
+..++.+.+|.++++.+.++++++|++|||||||+++.+++++.+.... .+...+++|++|+++|+.|+ ++++...++
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 3557888999999999999999999999999999999999988765432 22235677777999999999 999988776
Q ss_pred C--cccceeeeEeeecc--ccCCCceEEEEcchHHHHHHhcCC-------CCCCccEEEEecCCCCC---CChhHHHHHH
Q 000991 372 E--KLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR-------SLRGVTHVIVDEIHERG---MNEDFLLIVL 437 (1197)
Q Consensus 372 ~--~lg~~VGy~ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~-------~L~~is~VIIDEaHeR~---~~~D~Ll~lL 437 (1197)
. .++...|.....+. ......+|+|+||++|.+.+...+ .+.++++|||||||+.. .....+..++
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 3 44444443221111 111468999999999998884322 57889999999999521 1122222222
Q ss_pred HHHc-ccC---------ccceEEEecccCCHH----------H---HHhhhCCCCccccCCc--------ccceeeee--
Q 000991 438 KELL-PRR---------PELRLILMSATLNAE----------L---FSSYFGGAPMLHIPGF--------TYPVRAYF-- 484 (1197)
Q Consensus 438 r~ll-~~r---------~~lklIlmSATl~~~----------~---f~~yf~~~pvi~i~gr--------~~PV~~~y-- 484 (1197)
...+ ... +..++|+||||+... . +...++...+...... ..|...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 2211 111 667999999999541 1 2222322111111110 11111110
Q ss_pred -----------hHhHHHHhhhccCcccccccchhhh--hHHHH--HHHH---------------HH------Hh--hhhh
Q 000991 485 -----------LENILEMTRYRLNTYNQIDDYGQEK--SWKMQ--KQAL---------------AL------RK--RKSS 526 (1197)
Q Consensus 485 -----------ledi~~l~~~~l~~~~~i~~~~~e~--~~~~~--~~~~---------------~~------~~--~~~~ 526 (1197)
+..+.......+.. .....++... .|... .... .. .. ....
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQM-SPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTC-CCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhcc-CcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111000 0001111000 00000 0000 00 00 0000
Q ss_pred hHHHHHHHHHhhhhc---------------------------chhhhhhhccccCCCCCCchhhHHHHHHHHHhhcC-CC
Q 000991 527 IASAVEDALEAADFR---------------------------EYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKER-PG 578 (1197)
Q Consensus 527 ~~~~ve~~l~~~~~~---------------------------~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~-~g 578 (1197)
....+...+...... ......................+..++...+...+ .+
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 000000000000000 00000000000000011122334445555444444 78
Q ss_pred cEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCC--------CCHHHHHHhcCCCCCCceEEEEeeccccccccc
Q 000991 579 AVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGS--------MASSEQRLIFDKPEDGVRKIVLATNMAETSITI 650 (1197)
Q Consensus 579 ~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~--------L~~~er~~v~~~f~~G~~kVLVATniaEtGIdI 650 (1197)
++|||+++++.++.+++.|...+.+.. .++.+..+||+ |+..+|..+++.|++|..+|||||+++++|||+
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~-~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDi 480 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAE-VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDI 480 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccc-cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcc
Confidence 999999999999999999997633321 25778899999 999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEecc
Q 000991 651 NDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYP 706 (1197)
Q Consensus 651 PdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys 706 (1197)
|+|++||+++.|. |..+|.||+|||||.+ +.++.+++
T Consensus 481 p~v~~VI~~d~p~------------------s~~~~~Qr~GRArr~g-~~~~l~~~ 517 (699)
T 4gl2_A 481 KECNIVIRYGLVT------------------NEIAMVQARGRARADE-STYVLVAH 517 (699)
T ss_dssp CSCCCCEEESCCC------------------CHHHHHHHHTTSCSSS-CEEEEEEE
T ss_pred ccCCEEEEeCCCC------------------CHHHHHHHcCCCCCCC-ceEEEEEe
Confidence 9999999955554 6778999999987755 44444444
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.3e-33 Score=329.12 Aligned_cols=305 Identities=14% Similarity=0.120 Sum_probs=204.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
+.++.......+.+|.++++.+.+++++++++|||||||+++..+++... .. ..+++|++|+|+||.|+++++..
T Consensus 12 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~--~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 12 SFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RK--GKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cC--CCEEEEEECCHHHHHHHHHHHHH
Confidence 33444445556788999999999999999999999999997777766543 22 34566666999999999999977
Q ss_pred HhCCcccceeeeEeeec----------cccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCC-------------
Q 000991 369 ERGEKLGESVGYKVRLE----------GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE------------- 425 (1197)
Q Consensus 369 e~g~~lg~~VGy~ir~e----------~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe------------- 425 (1197)
... .+..++.-.... ......++|+|+|||.|++.+.. ..+.++++|||||||.
T Consensus 87 ~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~ 163 (414)
T 3oiy_A 87 LAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLM 163 (414)
T ss_dssp HCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHH
T ss_pred Hcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHh
Confidence 532 333333211111 11123489999999999876653 4577999999999994
Q ss_pred -CCCChhHHHHHHHHHc--------ccCccceEEEecccCCHH-----HHHhhhCCCCccccCCcccceeeeehHhHHHH
Q 000991 426 -RGMNEDFLLIVLKELL--------PRRPELRLILMSATLNAE-----LFSSYFGGAPMLHIPGFTYPVRAYFLENILEM 491 (1197)
Q Consensus 426 -R~~~~D~Ll~lLr~ll--------~~r~~lklIlmSATl~~~-----~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l 491 (1197)
.+...+.+..+++.+- ...++.++++||||+.++ .+..+++ ..+.........+...|..
T Consensus 164 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~----- 237 (414)
T 3oiy_A 164 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRIS----- 237 (414)
T ss_dssp HTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEES-----
T ss_pred hcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeec-----
Confidence 3333332333333321 122678999999995322 1222221 0000000000011111100
Q ss_pred hhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHH
Q 000991 492 TRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHI 571 (1197)
Q Consensus 492 ~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i 571 (1197)
....+ .+..+
T Consensus 238 ------------------------------------------------------------------~~~~~----~l~~~ 247 (414)
T 3oiy_A 238 ------------------------------------------------------------------SRSKE----KLVEL 247 (414)
T ss_dssp ------------------------------------------------------------------SCCHH----HHHHH
T ss_pred ------------------------------------------------------------------cCHHH----HHHHH
Confidence 00001 12222
Q ss_pred HhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEE-eccCCCCHHHHHHhcCCCCCCceEEEEe----eccccc
Q 000991 572 VKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLL-ACHGSMASSEQRLIFDKPEDGVRKIVLA----TNMAET 646 (1197)
Q Consensus 572 ~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~-~lHs~L~~~er~~v~~~f~~G~~kVLVA----TniaEt 646 (1197)
++. .++++||||+++.+++.+++.|... ++.+. .+||. +|+ ++.|++|+.+|||| |+++++
T Consensus 248 l~~-~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~ 313 (414)
T 3oiy_A 248 LEI-FRDGILIFAQTEEEGKELYEYLKRF-------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTR 313 (414)
T ss_dssp HHH-HCSSEEEEESSHHHHHHHHHHHHHT-------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCC
T ss_pred HHH-cCCCEEEEECCHHHHHHHHHHHHHc-------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhc
Confidence 222 2479999999999999999999986 55677 89984 333 89999999999999 999999
Q ss_pred ccccCC-EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-----CCeEEEeccc
Q 000991 647 SITIND-VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-----PGECYHLYPR 707 (1197)
Q Consensus 647 GIdIPd-V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-----~G~cy~Lys~ 707 (1197)
|||+|+ |++||++|.|+. .|..+|.||+|||||.+ +|.|+.++..
T Consensus 314 GiDip~~v~~VI~~~~p~~----------------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 314 GVDLPERIKYVIFWGTPSG----------------PDVYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp CCCCTTTCCEEEEESCCTT----------------TCHHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred cCccccccCEEEEECCCCC----------------CCHHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 999999 999999777731 27889999999999985 6999999843
No 37
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.3e-33 Score=341.13 Aligned_cols=305 Identities=19% Similarity=0.246 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
..+|.++++.+.+++++++++|||||||+++.++++.. ...++|+.|+++|+.|+.+++.. +|.......|
T Consensus 27 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~ 97 (523)
T 1oyw_A 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNS 97 (523)
T ss_dssp CTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 45688999999999999999999999999888777631 23567777999999999998854 4443322222
Q ss_pred eEeee------ccccCCCceEEEEcchHHHHHHhcC-CCCCCccEEEEecCCCCC---CChhHHHHHHHHHcccCccceE
Q 000991 380 YKVRL------EGMKGRDTRLMFCTTGILLRRLLVD-RSLRGVTHVIVDEIHERG---MNEDFLLIVLKELLPRRPELRL 449 (1197)
Q Consensus 380 y~ir~------e~~~~~~t~Ilv~Tpg~LLr~L~~d-~~L~~is~VIIDEaHeR~---~~~D~Ll~lLr~ll~~r~~lkl 449 (1197)
..... ........+|+|+||+.|+.....+ -...++++|||||||+.+ .+.......+..+....|+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 177 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCE
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCE
Confidence 11100 1112245799999999985321111 134789999999999743 2122222233344445678899
Q ss_pred EEecccCCHH---HHHhhhC-CCCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhh
Q 000991 450 ILMSATLNAE---LFSSYFG-GAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS 525 (1197)
Q Consensus 450 IlmSATl~~~---~f~~yf~-~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~ 525 (1197)
|+||||++.. .+.++++ ..+.+.+.+...|.-.+....
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~-------------------------------------- 219 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLME-------------------------------------- 219 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEE--------------------------------------
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEe--------------------------------------
Confidence 9999999764 4455554 233333333222211110000
Q ss_pred hhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCC
Q 000991 526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1197)
Q Consensus 526 ~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 605 (1197)
. .+.... +..++.....+++||||+++++++.+++.|...
T Consensus 220 -------------------------------~---~~~~~~-l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~----- 259 (523)
T 1oyw_A 220 -------------------------------K---FKPLDQ-LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK----- 259 (523)
T ss_dssp -------------------------------C---SSHHHH-HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT-----
T ss_pred -------------------------------C---CCHHHH-HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC-----
Confidence 0 000111 222233345679999999999999999999986
Q ss_pred CCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhh
Q 000991 606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA 685 (1197)
Q Consensus 606 ~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas 685 (1197)
++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||+++.|+ |.++
T Consensus 260 --g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~------------------s~~~ 319 (523)
T 1oyw_A 260 --GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------------------NIES 319 (523)
T ss_dssp --TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCS------------------SHHH
T ss_pred --CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCC------------------CHHH
Confidence 56699999999999999999999999999999999999999999999999977776 8889
Q ss_pred HHhhhcccCCCC-CCeEEEeccccchh
Q 000991 686 ARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 686 ~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
|.||+|||||.+ +|.|+.+|+..+..
T Consensus 320 y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 320 YYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp HHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred HHHHhccccCCCCCceEEEEeCHHHHH
Confidence 999999999996 79999999876654
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-32 Score=327.18 Aligned_cols=375 Identities=17% Similarity=0.205 Sum_probs=228.2
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC---
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE--- 372 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~--- 372 (1197)
.++.+.+|.+++..+.++ ++++++|||+|||+++..++++.+. .. ..+++|++|+++|+.|+++.+.+.++.
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KY--GGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HS--CSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cC--CCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 456788999999999888 9999999999999999999887664 22 335666669999999999999888765
Q ss_pred cccceeeeEeeecc-ccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEE
Q 000991 373 KLGESVGYKVRLEG-MKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 373 ~lg~~VGy~ir~e~-~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
.++...|.....+. ....+.+|+|+|++.|.+.+.... .+.++++|||||||... +......+++.+....+..+++
T Consensus 82 ~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~-~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 82 KIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAV-GNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp GEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCS-TTCHHHHHHHHHHHHCSSCCEE
T ss_pred heEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccC-CCCcHHHHHHHHHhcCCCCeEE
Confidence 33333331111100 011257899999999999887655 57899999999999642 2223333444444445678899
Q ss_pred EecccCC--HHHHHhhhC---CCCccc-------cCCcccceeeee-----hHhHHHHhhhccCcccccccchhhhhHHH
Q 000991 451 LMSATLN--AELFSSYFG---GAPMLH-------IPGFTYPVRAYF-----LENILEMTRYRLNTYNQIDDYGQEKSWKM 513 (1197)
Q Consensus 451 lmSATl~--~~~f~~yf~---~~pvi~-------i~gr~~PV~~~y-----ledi~~l~~~~l~~~~~i~~~~~e~~~~~ 513 (1197)
+||||+. .+.+.+++. ..+... +.....+....+ .+....+.... .......
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 229 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLL-----------REMLRDA 229 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHH-----------HHHHHHH
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHH-----------HHHHHHH
Confidence 9999994 455555443 111100 000001111100 00000000000 0000000
Q ss_pred HHHHHHH-----------HhhhhhhHHHHHHHHHhhhh------------------------------cchhhhh-----
Q 000991 514 QKQALAL-----------RKRKSSIASAVEDALEAADF------------------------------REYSVQT----- 547 (1197)
Q Consensus 514 ~~~~~~~-----------~~~~~~~~~~ve~~l~~~~~------------------------------~~~~~~~----- 547 (1197)
....... ..........+...+..... ..+-...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (494)
T 1wp9_A 230 LKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAK 309 (494)
T ss_dssp HHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhc
Confidence 0000000 00000000000000000000 0000000
Q ss_pred ----------------hhc---c---ccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCC
Q 000991 548 ----------------QQS---L---SCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD 605 (1197)
Q Consensus 548 ----------------~~~---l---~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~ 605 (1197)
... + ............+..++.........+++|||+++++.++.+++.|...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----- 384 (494)
T 1wp9_A 310 AGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----- 384 (494)
T ss_dssp TTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-----
T ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-----
Confidence 000 0 0000111122333344444443357889999999999999999999986
Q ss_pred CCceEEEeccC--------CCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCcc
Q 000991 606 PSRVLLLACHG--------SMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677 (1197)
Q Consensus 606 ~~~~~I~~lHs--------~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~ 677 (1197)
++.+..+|| +++..+|+.+++.|++|..+|||||+++++|||+|++++||.++.+.
T Consensus 385 --~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~-------------- 448 (494)
T 1wp9_A 385 --GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-------------- 448 (494)
T ss_dssp --TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH--------------
T ss_pred --CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC--------------
Confidence 566889999 99999999999999999999999999999999999999999965554
Q ss_pred ccccCHhhHHhhhcccCCCCCCeEEEeccccchhh
Q 000991 678 PSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDA 712 (1197)
Q Consensus 678 ~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~~ 712 (1197)
|.+.+.||+|||||.++|.||.|+++...+.
T Consensus 449 ----~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 449 ----SAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp ----HHHHHHHHHTTSCSCCCSEEEEEEETTSHHH
T ss_pred ----CHHHHHHHHhhccCCCCceEEEEEecCCHHH
Confidence 6778999999999999999999999876553
No 39
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.8e-33 Score=331.94 Aligned_cols=286 Identities=18% Similarity=0.168 Sum_probs=206.2
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeee-ccccCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRL-EGMKGR 390 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~-e~~~~~ 390 (1197)
++++++++||||||||+++..++++.+... + .+++|++||++||.|+++.+. +..+++.... +....+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g--~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~~ 69 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--R--LRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERTG 69 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--T--CCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--C--CCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCCC
Confidence 478999999999999999988888766542 2 357777799999999887763 3344544432 233334
Q ss_pred CceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHHHHHhhhCCCCc
Q 000991 391 DTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPM 470 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf~~~pv 470 (1197)
+..+.++|.|.+.+.+..+..+.++++|||||+|+++...+.....++.+. .+++.++|+||||++.. +..
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~------- 140 (431)
T 2v6i_A 70 NEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEA------- 140 (431)
T ss_dssp CCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCS-------
T ss_pred CceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhh-------
Confidence 667889999999988888778999999999999987655566666666654 34688999999998643 111
Q ss_pred cccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhc
Q 000991 471 LHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQS 550 (1197)
Q Consensus 471 i~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~ 550 (1197)
.+....|+...-.. ...
T Consensus 141 --~~~~~~~i~~~~~~---------~~~---------------------------------------------------- 157 (431)
T 2v6i_A 141 --FPPSNSPIIDEETR---------IPD---------------------------------------------------- 157 (431)
T ss_dssp --SCCCSSCCEEEECC---------CCS----------------------------------------------------
T ss_pred --hcCCCCceeecccc---------CCH----------------------------------------------------
Confidence 11111111110000 000
Q ss_pred cccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCC
Q 000991 551 LSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKP 630 (1197)
Q Consensus 551 l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f 630 (1197)
. .... ++.. +.. ..+++||||+++++++.+++.|... ++.+..+||+ +|+.+++.|
T Consensus 158 ------~--~~~~---~~~~-l~~-~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~v~~lhg~----~r~~~~~~f 213 (431)
T 2v6i_A 158 ------K--AWNS---GYEW-ITE-FDGRTVWFVHSIKQGAEIGTCLQKA-------GKKVLYLNRK----TFESEYPKC 213 (431)
T ss_dssp ------S--CCSS---CCHH-HHS-CSSCEEEECSSHHHHHHHHHHHHHT-------TCCEEEESTT----THHHHTTHH
T ss_pred ------H--HHHH---HHHH-HHc-CCCCEEEEeCCHHHHHHHHHHHHHc-------CCeEEEeCCc----cHHHHHHhh
Confidence 0 0000 0111 112 3679999999999999999999976 4568999997 678899999
Q ss_pred CCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC-CeEEEecc
Q 000991 631 EDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-GECYHLYP 706 (1197)
Q Consensus 631 ~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~-G~cy~Lys 706 (1197)
++|+++|||||+++|+||||| +.+||++|..+.+.|| ..++......|.|.++|.||+|||||.++ +.|+.+|.
T Consensus 214 ~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 214 KSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999999999999999 9999999999988888 45555566788999999999999999973 44555554
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.2e-33 Score=332.44 Aligned_cols=290 Identities=18% Similarity=0.167 Sum_probs=199.9
Q ss_pred HHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeec-cc
Q 000991 309 AISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLE-GM 387 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e-~~ 387 (1197)
++.++++++++||||||||+++.+++++.+... + .+++|++|||+||.|+++.+. +..+++....- ..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~--~~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~~v 72 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--R--LRTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFSAH 72 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--T--CCEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--C--CeEEEEcchHHHHHHHHHHHh-------cCCeEEecccceec
Confidence 356899999999999999999999998877542 2 356666699999999998774 12344443321 22
Q ss_pred cCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHHHHHhhhCC
Q 000991 388 KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGG 467 (1197)
Q Consensus 388 ~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf~~ 467 (1197)
..++.-+-+++.+.+...+.....+.++++|||||+|+.+...++.+..+..+.. .++.++|+||||++... ..+..
T Consensus 73 ~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~- 149 (440)
T 1yks_A 73 GSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPH- 149 (440)
T ss_dssp CCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCC-
T ss_pred cCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhh-
Confidence 3334445667778877777777789999999999999875555555566655543 36789999999986441 11111
Q ss_pred CCccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhh
Q 000991 468 APMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQT 547 (1197)
Q Consensus 468 ~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~ 547 (1197)
...|+...... ...
T Consensus 150 --------~~~~~~~~~~~---------~~~------------------------------------------------- 163 (440)
T 1yks_A 150 --------SNGEIEDVQTD---------IPS------------------------------------------------- 163 (440)
T ss_dssp --------CSSCEEEEECC---------CCS-------------------------------------------------
T ss_pred --------cCCCeeEeeec---------cCh-------------------------------------------------
Confidence 01111110000 000
Q ss_pred hhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhc
Q 000991 548 QQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIF 627 (1197)
Q Consensus 548 ~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~ 627 (1197)
.... .++..+.+ ..+++||||+++++++.+++.|... ++.+..+|| ++|..++
T Consensus 164 ---------~~~~-----~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~-------~~~v~~lhg----~~R~~~~ 216 (440)
T 1yks_A 164 ---------EPWN-----TGHDWILA--DKRPTAWFLPSIRAANVMAASLRKA-------GKSVVVLNR----KTFEREY 216 (440)
T ss_dssp ---------SCCS-----SSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHT-------TCCEEECCS----SSCC---
T ss_pred ---------HHHH-----HHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHc-------CCCEEEecc----hhHHHHH
Confidence 0000 00111222 2579999999999999999999986 466899999 5788999
Q ss_pred CCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccc-cCCCCCCCccccccCHhhHHhhhcccCCC--CCCeEEEe
Q 000991 628 DKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSY-DALNNTPCLLPSWISKAAARQRRGRAGRV--QPGECYHL 704 (1197)
Q Consensus 628 ~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~y-D~~~~~~~l~~~~iSkas~~QR~GRAGR~--~~G~cy~L 704 (1197)
+.|++|+++|||||+++|+||||| +++|||+|..+.+.| +...++......|.|.++|.||+|||||. ++|.||.+
T Consensus 217 ~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 217 PTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp -----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred hhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 999999999999999999999999 999999999887665 33333444456788999999999999997 38999999
Q ss_pred cc
Q 000991 705 YP 706 (1197)
Q Consensus 705 ys 706 (1197)
|+
T Consensus 296 ~~ 297 (440)
T 1yks_A 296 SE 297 (440)
T ss_dssp CS
T ss_pred ec
Confidence 84
No 41
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.98 E-value=1.3e-31 Score=343.21 Aligned_cols=395 Identities=16% Similarity=0.161 Sum_probs=192.3
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh---CC
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER---GE 372 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~---g~ 372 (1197)
....+.+|.+++..+.+++++|+++|||||||+++.+++++.+.....+...+++|++|+++|+.|+.+.+...+ +.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 345667888999999999999999999999999999999987764332224567777799999999999887765 44
Q ss_pred cccceeeeEeeecc--ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHccc-----
Q 000991 373 KLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR----- 443 (1197)
Q Consensus 373 ~lg~~VGy~ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~----- 443 (1197)
.++...|....... ....+++|+|+||++|.+.+.... .+.++++|||||||+..-... ...++..++..
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~ 404 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSA 404 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHHHHhhccC
Confidence 44444442211110 111357999999999999887654 578899999999997544333 33333333332
Q ss_pred CccceEEEecccCCH----------HHHH---hhhCCCCccccCCc--------ccceee----------eehH------
Q 000991 444 RPELRLILMSATLNA----------ELFS---SYFGGAPMLHIPGF--------TYPVRA----------YFLE------ 486 (1197)
Q Consensus 444 r~~lklIlmSATl~~----------~~f~---~yf~~~pvi~i~gr--------~~PV~~----------~yle------ 486 (1197)
.+..++|+||||+.. +.+. ..++...+...... ..|... .+..
T Consensus 405 ~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 567899999999931 1121 22221111100000 000000 0000
Q ss_pred -hHHHHhhhccC--cc--cccccchhh--hhHHHH--HH----------------------HHHHHh-----------hh
Q 000991 487 -NILEMTRYRLN--TY--NQIDDYGQE--KSWKMQ--KQ----------------------ALALRK-----------RK 524 (1197)
Q Consensus 487 -di~~l~~~~l~--~~--~~i~~~~~e--~~~~~~--~~----------------------~~~~~~-----------~~ 524 (1197)
.+.......+. .. .....++.. ..|... +. .....+ ..
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 00001110000 00 000000000 000000 00 000000 00
Q ss_pred hhhHHHHHHHHHhhhhcchhhhh--------------hhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHH
Q 000991 525 SSIASAVEDALEAADFREYSVQT--------------QQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDI 590 (1197)
Q Consensus 525 ~~~~~~ve~~l~~~~~~~~~~~~--------------~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei 590 (1197)
......+...+.......+.... ................+..++.........+++|||+++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 00000111111000000000000 0000000011112223333444433446678999999999999
Q ss_pred HHHHHHHHcCCCCCC-----CCceEEEeccCCCCHHHHHHhcCCCCC-CceEEEEeecccccccccCCEEEEEeCCCCCc
Q 000991 591 NSLKDQLQAHPLLGD-----PSRVLLLACHGSMASSEQRLIFDKPED-GVRKIVLATNMAETSITINDVVFVIDCGKAKE 664 (1197)
Q Consensus 591 ~~l~~~L~~~~~~~~-----~~~~~I~~lHs~L~~~er~~v~~~f~~-G~~kVLVATniaEtGIdIPdV~~VId~G~~k~ 664 (1197)
+.+++.|...+.+.. ..+.....+||+|+..+|..+++.|++ |..+|||||+++++|||+|+|++||+++.|.
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~- 723 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG- 723 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCS-
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC-
Confidence 999999987532111 113345667999999999999999999 9999999999999999999999999955554
Q ss_pred ccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccch
Q 000991 665 TSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVY 710 (1197)
Q Consensus 665 ~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~ 710 (1197)
|..+|.||+|| ||.++|.||.|+++...
T Consensus 724 -----------------s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 724 -----------------NVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp -----------------CHHHHHTC--------CCCEEEEECCHHH
T ss_pred -----------------CHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 77788999999 99999999999987654
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=2.5e-32 Score=340.62 Aligned_cols=289 Identities=21% Similarity=0.242 Sum_probs=213.1
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeee-cccc
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRL-EGMK 388 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~-e~~~ 388 (1197)
+.++++++++||||||||+++.+++++.+... ..+++|++|||+||.|+++++.. . .+++.+.. ....
T Consensus 238 l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----~~~~lilaPTr~La~Q~~~~l~~---~----~i~~~~~~l~~v~ 306 (673)
T 2wv9_A 238 LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----RLRTAVLAPTRVVAAEMAEALRG---L----PVRYLTPAVQREH 306 (673)
T ss_dssp GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHTTT---S----CCEECCC---CCC
T ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----CCcEEEEccHHHHHHHHHHHHhc---C----CeeeecccccccC
Confidence 44899999999999999999999999876542 24567777999999999987741 1 23443332 1233
Q ss_pred CCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCHHHHHhhhCCC
Q 000991 389 GRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGA 468 (1197)
Q Consensus 389 ~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~~~f~~yf~~~ 468 (1197)
.++.-+-+++.+.+.+.+..+..+.++++|||||+|+++...+..+..++.++. .++.++|+||||++... ..
T Consensus 307 tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i-~~----- 379 (673)
T 2wv9_A 307 SGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGTS-DP----- 379 (673)
T ss_dssp CSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CS-----
T ss_pred CHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhh-hh-----
Confidence 445667788999998888888889999999999999876666666777766653 25789999999996431 11
Q ss_pred CccccCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhh
Q 000991 469 PMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQ 548 (1197)
Q Consensus 469 pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~ 548 (1197)
......|+...... ...
T Consensus 380 ----~~~~~~~i~~v~~~---------~~~-------------------------------------------------- 396 (673)
T 2wv9_A 380 ----FPDTNSPVHDVSSE---------IPD-------------------------------------------------- 396 (673)
T ss_dssp ----SCCCSSCEEEEECC---------CCS--------------------------------------------------
T ss_pred ----hcccCCceEEEeee---------cCH--------------------------------------------------
Confidence 11111122111000 000
Q ss_pred hccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcC
Q 000991 549 QSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFD 628 (1197)
Q Consensus 549 ~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~ 628 (1197)
... ..++..+.+ ..+++||||+++++++.+++.|... ++.+..+|| ++|..+++
T Consensus 397 --------~~~-----~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~-------g~~v~~lHg----~eR~~v~~ 450 (673)
T 2wv9_A 397 --------RAW-----SSGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRA-------GKRVIQLNR----KSYDTEYP 450 (673)
T ss_dssp --------SCC-----SSCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTT-------TCCEEEECS----SSHHHHGG
T ss_pred --------HHH-----HHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhC-------CCeEEEeCh----HHHHHHHH
Confidence 000 000111222 4689999999999999999999976 566899999 48899999
Q ss_pred CCCCCceEEEEeecccccccccCCEEEEEeCCCCCcc--cccCCCCCCCccccccCHhhHHhhhcccCCC--CCCeEEEe
Q 000991 629 KPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKET--SYDALNNTPCLLPSWISKAAARQRRGRAGRV--QPGECYHL 704 (1197)
Q Consensus 629 ~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~--~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~--~~G~cy~L 704 (1197)
.|++|+++|||||+++|+||||| +++|||+|....+ .||....+..+...|.|.++|.||+|||||. ++|.||.+
T Consensus 451 ~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 451 KCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp GGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred HHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 99999999999999999999999 9999999976653 3566656666667889999999999999998 47999999
Q ss_pred cc
Q 000991 705 YP 706 (1197)
Q Consensus 705 ys 706 (1197)
+.
T Consensus 530 ~~ 531 (673)
T 2wv9_A 530 GG 531 (673)
T ss_dssp CS
T ss_pred Ee
Confidence 74
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=1e-30 Score=339.06 Aligned_cols=396 Identities=15% Similarity=0.146 Sum_probs=189.5
Q ss_pred hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh---C
Q 000991 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER---G 371 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~---g 371 (1197)
.......+|.+++..+.++++++|++|||||||+++.+++++.+.....+...+++|++|+++|+.|+++.+...+ +
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 324 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 324 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3456678899999999999999999999999999999998876543222224567777799999999999887765 4
Q ss_pred CcccceeeeEeeecc--ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHccc----
Q 000991 372 EKLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR---- 443 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~---- 443 (1197)
..++...|....... ....+++|+|+||++|.+.+.... .+.++++|||||||+..-... +..++..++..
T Consensus 325 ~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNS 403 (936)
T ss_dssp CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTT
T ss_pred ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHHHHhhcc
Confidence 444444442211110 011357899999999999887654 477899999999997543333 44444333332
Q ss_pred -CccceEEEecccCCH----------HHHH---hhhCCCCccccCCc---------ccceeee----------e---h--
Q 000991 444 -RPELRLILMSATLNA----------ELFS---SYFGGAPMLHIPGF---------TYPVRAY----------F---L-- 485 (1197)
Q Consensus 444 -r~~lklIlmSATl~~----------~~f~---~yf~~~pvi~i~gr---------~~PV~~~----------y---l-- 485 (1197)
.+..++++||||+.. +.+. ..++. ..+..... .-|.... + +
T Consensus 404 ~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~-~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 482 (936)
T 4a2w_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (936)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTC-SEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCC-ceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHH
Confidence 567899999999931 1111 11211 11111000 0010000 0 0
Q ss_pred --HhHHHHhhhccC--cc--cccccchhh--hhHHHH--HH-------------------------HHHH--------Hh
Q 000991 486 --ENILEMTRYRLN--TY--NQIDDYGQE--KSWKMQ--KQ-------------------------ALAL--------RK 522 (1197)
Q Consensus 486 --edi~~l~~~~l~--~~--~~i~~~~~e--~~~~~~--~~-------------------------~~~~--------~~ 522 (1197)
..+.......+. .. .....++.. ..|... +. ...+ ..
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 111111100000 00 000000000 000000 00 0000 00
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhhh--------------hhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHH
Q 000991 523 RKSSIASAVEDALEAADFREYSVQT--------------QQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWD 588 (1197)
Q Consensus 523 ~~~~~~~~ve~~l~~~~~~~~~~~~--------------~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ 588 (1197)
........+...+.......+.... ...........-....+..++.........+++|||+++++
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~ 642 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHH
Confidence 0000000111111000000000000 00000000011112222223333222356789999999999
Q ss_pred HHHHHHHHHHcCCCCCC-----CCceEEEeccCCCCHHHHHHhcCCCCC-CceEEEEeecccccccccCCEEEEEeCCCC
Q 000991 589 DINSLKDQLQAHPLLGD-----PSRVLLLACHGSMASSEQRLIFDKPED-GVRKIVLATNMAETSITINDVVFVIDCGKA 662 (1197)
Q Consensus 589 ei~~l~~~L~~~~~~~~-----~~~~~I~~lHs~L~~~er~~v~~~f~~-G~~kVLVATniaEtGIdIPdV~~VId~G~~ 662 (1197)
.++.+++.|...+.+.. ..+.....+||+|+..+|..+++.|+. |.++|||||+++++|||+|+|++||+++.|
T Consensus 643 ~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p 722 (936)
T 4a2w_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (936)
T ss_dssp HHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCC
T ss_pred HHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCC
Confidence 99999999987532211 112345567999999999999999999 999999999999999999999999994444
Q ss_pred CcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccchh
Q 000991 663 KETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYD 711 (1197)
Q Consensus 663 k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~~~ 711 (1197)
. |..+|.||+|| ||.++|.||.|+++...+
T Consensus 723 ~------------------s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 723 G------------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp S------------------CSHHHHCC--------CCCEEEEESCHHHH
T ss_pred C------------------CHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 3 55678899999 999999999999876554
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=4.7e-30 Score=323.91 Aligned_cols=301 Identities=18% Similarity=0.252 Sum_probs=200.8
Q ss_pred CCCHHHHHHHHHHHHcC------CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh
Q 000991 297 LPSYKERDALLKAISEN------QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER 370 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~------~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~ 370 (1197)
+..+..|.++++.+.++ .+++++||||||||+++.+++++.+.. + ..+++++||++||.|+++++.+.+
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g--~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---G--FQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---T--SCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---C--CeEEEEeCcHHHHHHHHHHHHHHh
Confidence 35577777777777654 589999999999999999999987642 2 346666699999999999998876
Q ss_pred C---CcccceeeeEeee------ccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 371 G---EKLGESVGYKVRL------EGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 371 g---~~lg~~VGy~ir~------e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
. ..++..+|..... +.......+|+|+||+.+.+ +..+.++++|||||+|+.+.... ..+.
T Consensus 442 ~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~ 511 (780)
T 1gm5_A 442 SKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALM 511 (780)
T ss_dssp TCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCC
T ss_pred hhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHH
Confidence 3 3333333311110 11123458999999997754 44688999999999997543321 1223
Q ss_pred ccCccceEEEecccCCHHHHHh-hhCCCCccccC---CcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHH
Q 000991 442 PRRPELRLILMSATLNAELFSS-YFGGAPMLHIP---GFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQA 517 (1197)
Q Consensus 442 ~~r~~lklIlmSATl~~~~f~~-yf~~~pvi~i~---gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~ 517 (1197)
....+.++++||||+.+..+.. +++...+..+. ....|+...+..+
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~------------------------------ 561 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPM------------------------------ 561 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCS------------------------------
T ss_pred HhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEecc------------------------------
Confidence 3345789999999986665553 44433222221 1122333222110
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHH--------
Q 000991 518 LALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDD-------- 589 (1197)
Q Consensus 518 ~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~e-------- 589 (1197)
...+.+...+...+ ...++++|||+..++
T Consensus 562 -----------------------------------------~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~ 598 (780)
T 1gm5_A 562 -----------------------------------------DRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKS 598 (780)
T ss_dssp -----------------------------------------STHHHHHHHHHHHT--TTSCCBCCBCCCC--------CH
T ss_pred -----------------------------------------chHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHH
Confidence 00000011111111 245689999997644
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccC
Q 000991 590 INSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDA 669 (1197)
Q Consensus 590 i~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~ 669 (1197)
++.+++.|.... + .++.+..+||+|+.++|+.+++.|++|+++|||||+++++|||+|++++||+.+.++
T Consensus 599 a~~l~~~L~~~~-~---~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r------ 668 (780)
T 1gm5_A 599 AVEMYEYLSKEV-F---PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPER------ 668 (780)
T ss_dssp HHHHHHSGGGSC-C------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSS------
T ss_pred HHHHHHHHHhhh-c---CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCC------
Confidence 566677776511 1 245688999999999999999999999999999999999999999999999854443
Q ss_pred CCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecc
Q 000991 670 LNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYP 706 (1197)
Q Consensus 670 ~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys 706 (1197)
.+.+++.||+|||||.+ +|.||.+++
T Consensus 669 -----------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 669 -----------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp -----------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred -----------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 14457889999999985 799999987
No 45
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=273.93 Aligned_cols=191 Identities=49% Similarity=0.867 Sum_probs=174.7
Q ss_pred HhcChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHH
Q 000991 281 WQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAM 360 (1197)
Q Consensus 281 ~~~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~ 360 (1197)
+..++.+..+.+.|..+|++.+|++++..+.++++++++|||||||||++.+++++.....+.+..+.++|++|+|+++.
T Consensus 44 ~~~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~ 123 (235)
T 3llm_A 44 LEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAV 123 (235)
T ss_dssp HHHCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHH
T ss_pred hhcCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHH
Confidence 34577888999999999999999999999999999999999999999999999999887655555678999999999999
Q ss_pred HHHHHHHHHhCCcccceeeeEeeeccccC-CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHH
Q 000991 361 AVSERVAAERGEKLGESVGYKVRLEGMKG-RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKE 439 (1197)
Q Consensus 361 qva~rVa~e~g~~lg~~VGy~ir~e~~~~-~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ 439 (1197)
|++++++.+++..++..+||.++.+.... .+++|+|||||+|++.+.. .+.++++|||||+|+|+++.++++..++.
T Consensus 124 q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 124 SVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp HHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 99999999999999999999998887764 6789999999999999876 48999999999999999999999999999
Q ss_pred HcccCccceEEEecccCCHHHHHhhhCCCCcccc
Q 000991 440 LLPRRPELRLILMSATLNAELFSSYFGGAPMLHI 473 (1197)
Q Consensus 440 ll~~r~~lklIlmSATl~~~~f~~yf~~~pvi~i 473 (1197)
++..+++.|+|+||||++.+.|++||+++|++.+
T Consensus 202 i~~~~~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp HHHHCTTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred HHhhCCCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 9988899999999999998899999999998764
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=1.5e-29 Score=331.08 Aligned_cols=271 Identities=14% Similarity=0.115 Sum_probs=180.0
Q ss_pred hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
.....+..|.++++.+.++++++++||||||||+++..+++..+ ..+ .+++|++|||+||.|+++++.. ++ ..
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~--~~~Lil~PtreLa~Q~~~~l~~-l~-~~ 147 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKG--KKSALVFPTVTLVKQTLERLQK-LA-DE 147 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---TTT--CCEEEEESSHHHHHHHHHHHHT-TS-CT
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---hcC--CeEEEEechHHHHHHHHHHHHH-hh-CC
Confidence 34456677888888899999999999999999997666666544 223 4566666999999999999977 44 33
Q ss_pred cceeeeEeeeccc----------cCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCC--------------CCCCh
Q 000991 375 GESVGYKVRLEGM----------KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHE--------------RGMNE 430 (1197)
Q Consensus 375 g~~VGy~ir~e~~----------~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHe--------------R~~~~ 430 (1197)
+..++.-....+. ....++|+|+|||.|++.+.. ..+.++++|||||||+ .|...
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 4344432222111 123489999999999876653 3577899999999995 22222
Q ss_pred hHHHHHHHHHc--------ccCccceEEEecccCCHH-----HHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccC
Q 000991 431 DFLLIVLKELL--------PRRPELRLILMSATLNAE-----LFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLN 497 (1197)
Q Consensus 431 D~Ll~lLr~ll--------~~r~~lklIlmSATl~~~-----~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~ 497 (1197)
+.+..+++.+- ...++.++++||||+.++ .+..++. ..+.......-.+...|..
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~----------- 294 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRIS----------- 294 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEES-----------
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEe-----------
Confidence 22223333221 112578999999995332 2222221 0000000000011111100
Q ss_pred cccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCC
Q 000991 498 TYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERP 577 (1197)
Q Consensus 498 ~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~ 577 (1197)
. +.. ..+..++.. .+
T Consensus 295 ----------------------------------------------------------~-----~k~-~~L~~ll~~-~~ 309 (1104)
T 4ddu_A 295 ----------------------------------------------------------S-----RSK-EKLVELLEI-FR 309 (1104)
T ss_dssp ----------------------------------------------------------C-----CCH-HHHHHHHHH-HC
T ss_pred ----------------------------------------------------------c-----CHH-HHHHHHHHh-cC
Confidence 0 000 112222222 24
Q ss_pred CcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEE-eccCCCCHHHHHHhcCCCCCCceEEEEe----ecccccccccCC
Q 000991 578 GAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLL-ACHGSMASSEQRLIFDKPEDGVRKIVLA----TNMAETSITIND 652 (1197)
Q Consensus 578 g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~-~lHs~L~~~er~~v~~~f~~G~~kVLVA----TniaEtGIdIPd 652 (1197)
+++||||++++.++.+++.|... ++.+. .+|| +|++ ++.|++|+.+|||| |+++++|||||+
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~-------g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~ 376 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRF-------KFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPE 376 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHT-------TCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTT
T ss_pred CCEEEEECcHHHHHHHHHHHHhC-------CCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCC
Confidence 89999999999999999999986 56677 9998 2555 99999999999999 999999999999
Q ss_pred -EEEEEeCCCCC
Q 000991 653 -VVFVIDCGKAK 663 (1197)
Q Consensus 653 -V~~VId~G~~k 663 (1197)
|++||++|+|+
T Consensus 377 ~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 377 RIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEEEESCCE
T ss_pred CCCEEEEECCCC
Confidence 99999999998
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.95 E-value=5.5e-29 Score=299.81 Aligned_cols=335 Identities=16% Similarity=0.126 Sum_probs=206.1
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc-c
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK-L 374 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~-l 374 (1197)
.+..+.+|.++++.+.+++++++++|||||||+++..++... +. .++|++|+++|+.|+++++.+ ++.. +
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~--~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v 161 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-FGEEYV 161 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CS--CEEEEESSHHHHHHHHHHGGG-GCGGGE
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEECCHHHHHHHHHHHHh-CCCcce
Confidence 467888999999999999999999999999999998877652 22 456666999999999999977 6544 3
Q ss_pred cceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 375 g~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
+...| ......+|+|+|++.+...+.. ...++++|||||+|+-. +..+- . ++...+..++|+|||
T Consensus 162 ~~~~g-------~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~~~-~~~~~-~----~~~~~~~~~~l~lSA 226 (472)
T 2fwr_A 162 GEFSG-------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLP-AESYV-Q----IAQMSIAPFRLGLTA 226 (472)
T ss_dssp EEBSS-------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGGTT-STTTH-H----HHHTCCCSEEEEEES
T ss_pred EEECC-------CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcCCC-ChHHH-H----HHHhcCCCeEEEEec
Confidence 32222 1224578999999999875531 22468999999999632 22221 2 223335678999999
Q ss_pred cCCH-----HHHHhhhCCC----CccccCCc-ccc-----eeeeehHhHHHHh-------hhccCcccc----cccchhh
Q 000991 455 TLNA-----ELFSSYFGGA----PMLHIPGF-TYP-----VRAYFLENILEMT-------RYRLNTYNQ----IDDYGQE 508 (1197)
Q Consensus 455 Tl~~-----~~f~~yf~~~----pvi~i~gr-~~P-----V~~~yledi~~l~-------~~~l~~~~~----i~~~~~e 508 (1197)
|+.. ..+..+++.. ....+.+. ..+ +......+-.... ...+..... ...+..
T Consensus 227 Tp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 305 (472)
T 2fwr_A 227 TFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK- 305 (472)
T ss_dssp CCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT-
T ss_pred CccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH-
Confidence 9941 2344555421 11111111 111 1111000000000 000000000 000000
Q ss_pred hhHHHHHHHHHHHhhhhhhH-HHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCH
Q 000991 509 KSWKMQKQALALRKRKSSIA-SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGW 587 (1197)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~-~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~ 587 (1197)
...... . ......... ......+. .........+..++....++++|||+++.
T Consensus 306 -~~~~~~--~-~~~~~~~~~~~~~~~~~~----------------------~~~~~k~~~l~~~l~~~~~~k~lvF~~~~ 359 (472)
T 2fwr_A 306 -IVMASG--Y-DERAYEALRAWEEARRIA----------------------FNSKNKIRKLREILERHRKDKIIIFTRHN 359 (472)
T ss_dssp -TTTTTC--C-SSSSSTTTHHHHHHHHHH----------------------HSCSHHHHHHHHHHHHTSSSCBCCBCSCH
T ss_pred -HHHHhc--c-CHHHHHHHHHHHHHHHHh----------------------hcChHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 000000 0 000000000 00000000 00011223445555556678999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccc
Q 000991 588 DDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSY 667 (1197)
Q Consensus 588 ~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~y 667 (1197)
+.++.+++.|. +..+||+++..+|+.+++.|++|..+|||||+++++|+|+|++++||+++.+.
T Consensus 360 ~~~~~l~~~l~------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~---- 423 (472)
T 2fwr_A 360 ELVYRISKVFL------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG---- 423 (472)
T ss_dssp HHHHHHHHHTT------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS----
T ss_pred HHHHHHHHHhC------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCC----
Confidence 99999998874 34689999999999999999999999999999999999999999999944443
Q ss_pred cCCCCCCCccccccCHhhHHhhhcccCCCCCC----eEEEeccccchh
Q 000991 668 DALNNTPCLLPSWISKAAARQRRGRAGRVQPG----ECYHLYPRYVYD 711 (1197)
Q Consensus 668 D~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G----~cy~Lys~~~~~ 711 (1197)
|...+.||+|||||.++| .+|.++++...+
T Consensus 424 --------------s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 424 --------------SAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp --------------CCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred --------------CHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 567888999999999877 456667665443
No 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=9.1e-28 Score=316.07 Aligned_cols=300 Identities=19% Similarity=0.246 Sum_probs=206.8
Q ss_pred CCCHHHHHHHHHHHHc----CC--eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHh
Q 000991 297 LPSYKERDALLKAISE----NQ--VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAER 370 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~----~~--vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~ 370 (1197)
...+.+|.++++.+.+ ++ +++++||||||||.++..+++.... .+ ..++|++||++||.|+++++.+.+
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g--~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NH--KQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TT--CEEEEECSSHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hC--CeEEEEechHHHHHHHHHHHHHHh
Confidence 3346777777777655 55 8999999999999998877766432 22 367777799999999999998776
Q ss_pred CCcccceeeeEeeec----------cccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHH
Q 000991 371 GEKLGESVGYKVRLE----------GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1197)
Q Consensus 371 g~~lg~~VGy~ir~e----------~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~l 440 (1197)
+. .+..++.-.++. .......+|+|+|++.|. .+-.+.++++|||||+|+.+.. . ...++.+
T Consensus 677 ~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~~--~-~~~l~~l 748 (1151)
T 2eyq_A 677 AN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGVR--H-KERIKAM 748 (1151)
T ss_dssp TT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCHH--H-HHHHHHH
T ss_pred hc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcChH--H-HHHHHHh
Confidence 42 223333222111 112346899999998653 3446889999999999974332 2 2223332
Q ss_pred cccCccceEEEecccCCHHHHHhhhCCCCcccc----CCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHH
Q 000991 441 LPRRPELRLILMSATLNAELFSSYFGGAPMLHI----PGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQ 516 (1197)
Q Consensus 441 l~~r~~lklIlmSATl~~~~f~~yf~~~pvi~i----~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~ 516 (1197)
+++.++++||||+.+..+...+.+..-..+ +....++..++... .
T Consensus 749 ---~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~------------------~---------- 797 (1151)
T 2eyq_A 749 ---RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY------------------D---------- 797 (1151)
T ss_dssp ---HTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEEC------------------C----------
T ss_pred ---cCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecC------------------C----------
Confidence 356789999999876655554443221111 11112222221100 0
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHH
Q 000991 517 ALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQ 596 (1197)
Q Consensus 517 ~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~ 596 (1197)
.......++..+ ..+++++|||++.++++.+++.
T Consensus 798 -------------------------------------------~~~i~~~il~~l---~~g~qvlvf~~~v~~~~~l~~~ 831 (1151)
T 2eyq_A 798 -------------------------------------------SMVVREAILREI---LRGGQVYYLYNDVENIQKAAER 831 (1151)
T ss_dssp -------------------------------------------HHHHHHHHHHHH---TTTCEEEEECCCSSCHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHH
Confidence 000011112222 2468999999999999999999
Q ss_pred HHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCc
Q 000991 597 LQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCL 676 (1197)
Q Consensus 597 L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l 676 (1197)
|.... .+..+..+||+|+..+|+.+++.|++|+.+|||||+++++|||||++++||..+.+.
T Consensus 832 L~~~~-----p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~------------- 893 (1151)
T 2eyq_A 832 LAELV-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH------------- 893 (1151)
T ss_dssp HHHHC-----TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTS-------------
T ss_pred HHHhC-----CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCC-------------
Confidence 98741 245689999999999999999999999999999999999999999999999733221
Q ss_pred cccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 677 LPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 677 ~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
.+.+++.||+||+||.+ +|.||.+++..
T Consensus 894 ----~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 894 ----FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp ----SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ----CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 25567899999999986 79999998754
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=3.9e-28 Score=295.30 Aligned_cols=324 Identities=11% Similarity=0.079 Sum_probs=200.3
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
...+.+|.++++.+.+++++++++|||||||+++..++...+. .+ ..++++++|+++|+.|+.+++... +...+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~---~~~vlvl~P~~~L~~Q~~~~~~~~-~~~~~~ 186 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NY---EGKILIIVPTTALTTQMADDFVDY-RLFSHA 186 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH-HC---SSEEEEEESSHHHHHHHHHHHHHT-TSSCGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh-CC---CCeEEEEECcHHHHHHHHHHHHHh-hcCCcc
Confidence 4567788888888888899999999999999999877776543 22 236777779999999999999543 322222
Q ss_pred eeeeEeeeccc---cCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc-CccceEEEe
Q 000991 377 SVGYKVRLEGM---KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR-RPELRLILM 452 (1197)
Q Consensus 377 ~VGy~ir~e~~---~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~-r~~lklIlm 452 (1197)
.++.-.+.... .....+|+|+|++.|.+. ....+.++++|||||+|..+ ... +..++.. .+..++++|
T Consensus 187 ~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~--~~~----~~~il~~~~~~~~~l~l 258 (510)
T 2oca_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT--GKS----ISSIISGLNNCMFKFGL 258 (510)
T ss_dssp GEEECGGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCC--HHH----HHHHGGGCTTCCEEEEE
T ss_pred ceEEEecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCC--ccc----HHHHHHhcccCcEEEEE
Confidence 22211111111 125689999999976542 11357789999999999632 222 2333332 356789999
Q ss_pred cccCCHH-----HHHhhhCCCCccccCC-------cccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHH
Q 000991 453 SATLNAE-----LFSSYFGGAPMLHIPG-------FTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALAL 520 (1197)
Q Consensus 453 SATl~~~-----~f~~yf~~~pvi~i~g-------r~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~ 520 (1197)
|||++.. .+..+|+. .+..++. ...|...... .. ....... ..
T Consensus 259 SATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~---------------~~-~~~~~~~------~~-- 313 (510)
T 2oca_A 259 SGSLRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSI---------------FL-RYPDEFT------TK-- 313 (510)
T ss_dssp ESCGGGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEE---------------EE-ECCHHHH------HH--
T ss_pred EeCCCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEE---------------ee-cCChHHh------cc--
Confidence 9999332 13334442 1111111 1111110000 00 0000000 00
Q ss_pred HhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcC
Q 000991 521 RKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAH 600 (1197)
Q Consensus 521 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~ 600 (1197)
. ........+..... .......+..++..... .....++||++ .++++.+++.|...
T Consensus 314 ~-~~~~~~~~~~~~~~--------------------~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~ 370 (510)
T 2oca_A 314 L-KGKTYQEEIKIITG--------------------LSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNE 370 (510)
T ss_dssp H-TTCCHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTT
T ss_pred c-cccchHHHHHHHhc--------------------cHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHc
Confidence 0 00000000000000 00001122233333332 23445666666 89999999999875
Q ss_pred CCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEee-cccccccccCCEEEEEeCCCCCcccccCCCCCCCcccc
Q 000991 601 PLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLAT-NMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPS 679 (1197)
Q Consensus 601 ~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVAT-niaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~ 679 (1197)
+..+..+||+++..+|+.+++.|.+|..+||||| +++++|||+|++++||..+.+.
T Consensus 371 -------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~---------------- 427 (510)
T 2oca_A 371 -------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVK---------------- 427 (510)
T ss_dssp -------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCC----------------
T ss_pred -------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCC----------------
Confidence 2258899999999999999999999999999999 9999999999999999954443
Q ss_pred ccCHhhHHhhhcccCCCCCCe-EEEecc
Q 000991 680 WISKAAARQRRGRAGRVQPGE-CYHLYP 706 (1197)
Q Consensus 680 ~iSkas~~QR~GRAGR~~~G~-cy~Lys 706 (1197)
|.+++.||+|||||.++|. ++.+|+
T Consensus 428 --s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 428 --SKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp --SCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred --CHHHHHHHHhcccccCCCCceEEEEE
Confidence 4567889999999998764 666665
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.95 E-value=1e-28 Score=323.20 Aligned_cols=264 Identities=14% Similarity=0.112 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC---C----c
Q 000991 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG---E----K 373 (1197)
Q Consensus 301 ~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g---~----~ 373 (1197)
..|.++++.+.++++++++||||||||+ +.++++..+.. ++ .+++|++|||+||.|+++++..... . .
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~--~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~ 133 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KG--KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENL 133 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TS--CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGS
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cC--CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccce
Confidence 8888999999999999999999999998 77788776653 23 4566667999999999999876653 2 2
Q ss_pred ccceeeeEeeec-----cccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc------
Q 000991 374 LGESVGYKVRLE-----GMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP------ 442 (1197)
Q Consensus 374 lg~~VGy~ir~e-----~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~------ 442 (1197)
++..+|.....+ ..... ++|+|+|||+|++.+.. +.++++|||||||+..-....+..+++.+--
T Consensus 134 v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~ 209 (1054)
T 1gku_B 134 IGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKT 209 (1054)
T ss_dssp EEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTT
T ss_pred EEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhh
Confidence 222333211111 11122 89999999999987764 7899999999999632122233333333210
Q ss_pred --cCccceEEEecccCCHH-HHH-hhhCCCCccccCCcccc---eeeeehHhHHHHhhhccCcccccccchhhhhHHHHH
Q 000991 443 --RRPELRLILMSATLNAE-LFS-SYFGGAPMLHIPGFTYP---VRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQK 515 (1197)
Q Consensus 443 --~r~~lklIlmSATl~~~-~f~-~yf~~~pvi~i~gr~~P---V~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~ 515 (1197)
..+..+++++|||++.. .+. .+++....+.+.....+ +...+.+
T Consensus 210 ~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----------------------------- 260 (1054)
T 1gku_B 210 KSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----------------------------- 260 (1054)
T ss_dssp TEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEES-----------------------------
T ss_pred hhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEec-----------------------------
Confidence 12456799999998542 111 11111111111111111 1111110
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHH
Q 000991 516 QALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD 595 (1197)
Q Consensus 516 ~~~~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~ 595 (1197)
.+ ... .+..+++.. ++++||||+++++++.+++
T Consensus 261 ----------------------------------------~~--k~~----~L~~ll~~~-~~~~LVF~~t~~~a~~l~~ 293 (1054)
T 1gku_B 261 ----------------------------------------DE--SIS----TLSSILEKL-GTGGIIYARTGEEAEEIYE 293 (1054)
T ss_dssp ----------------------------------------CC--CTT----TTHHHHTTS-CSCEEEEESSHHHHHHHHH
T ss_pred ----------------------------------------hh--HHH----HHHHHHhhc-CCCEEEEEcCHHHHHHHHH
Confidence 00 001 122333332 5789999999999999999
Q ss_pred HHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEe----ecccccccccCCE-EEEEeCCCC
Q 000991 596 QLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLA----TNMAETSITINDV-VFVIDCGKA 662 (1197)
Q Consensus 596 ~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVA----TniaEtGIdIPdV-~~VId~G~~ 662 (1197)
.|... +.+..+||++. .+++.|++|+.+|||| |+++++|||+|+| ++||++|.|
T Consensus 294 ~L~~~--------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 294 SLKNK--------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp TTTTS--------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHhhc--------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 98763 45889999983 5677889999999999 9999999999995 999999999
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.93 E-value=6.4e-26 Score=280.97 Aligned_cols=339 Identities=14% Similarity=0.111 Sum_probs=175.4
Q ss_pred CCCHHHHHHHHHHHHc-----CCeEEEEecCCChHHHHHHHHHHHHHHHHc-----cCCceEEEecchHHHHHHHHH-HH
Q 000991 297 LPSYKERDALLKAISE-----NQVVVVSGETGCGKTTQLPQYILESETEAA-----RGAACSIICTQPRRISAMAVS-ER 365 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~-----~~vvII~apTGSGKTtq~pq~ILe~~~~~~-----~g~~~~IivtqPrR~LA~qva-~r 365 (1197)
.....+|.+.+..+.+ ++.++++++||||||.++..++ ..++..+ .....+++++.||++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3456667777766654 5778999999999998876544 4444433 013456677779999999988 43
Q ss_pred HHHHhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcC-----CCCCCccEEEEecCCCCCCChhHHHHHHHHH
Q 000991 366 VAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVD-----RSLRGVTHVIVDEIHERGMNEDFLLIVLKEL 440 (1197)
Q Consensus 366 Va~e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d-----~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~l 440 (1197)
+ ..++ ..++. + .......+.+|+|+|++.|...+... -....+++|||||||. ....+ ...++.+
T Consensus 256 ~-~~~~----~~~~~-~-~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~-~~~~~--~~~~~~i 325 (590)
T 3h1t_A 256 F-TPFG----DARHK-I-EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHR-GSARD--NSNWREI 325 (590)
T ss_dssp C-TTTC----SSEEE-C-CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHH
T ss_pred H-Hhcc----hhhhh-h-hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcc-ccccc--hHHHHHH
Confidence 3 2223 22221 1 11223456899999999998765321 2456789999999994 33221 0122333
Q ss_pred cccCccceEEEecccCC---HHHHHhhhCCCCccccCCcccceeeeehHhHHHHhhhccCccccc--ccchhhhhHHHHH
Q 000991 441 LPRRPELRLILMSATLN---AELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQI--DDYGQEKSWKMQK 515 (1197)
Q Consensus 441 l~~r~~lklIlmSATl~---~~~f~~yf~~~pvi~i~gr~~PV~~~yledi~~l~~~~l~~~~~i--~~~~~e~~~~~~~ 515 (1197)
+...+..++|+||||+. ...+..+|+. ++.. +-+.+.+. ...+.++... ........+....
T Consensus 326 l~~~~~~~~l~lTATP~~~~~~~~~~~f~~-~~~~----------~~~~~~i~--~~~l~~~~~~~~~~~~~~~~~~~~~ 392 (590)
T 3h1t_A 326 LEYFEPAFQIGMTATPLREDNRDTYRYFGN-PIYT----------YSLRQGID--DGFLAPYRVHRVISEVDAAGWRPSK 392 (590)
T ss_dssp HHHSTTSEEEEEESSCSCTTTHHHHHHSCS-CSEE----------ECHHHHHH--HTSSCCEEEEEEEETTCC-------
T ss_pred HHhCCcceEEEeccccccccchhHHHHcCC-ceEe----------cCHHHHhh--CCccCCcEEEEeeeeeecccccccc
Confidence 33335678999999983 3456677763 2211 11111111 0000000000 0000000000000
Q ss_pred HHH-HHH---hhhhhhHHHHHHHHHhhhhcchhhhhhhccccCCCCCCchhhHHHHHHHHHh-hcCCCcEEEEeCCHHHH
Q 000991 516 QAL-ALR---KRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVK-KERPGAVLVFMTGWDDI 590 (1197)
Q Consensus 516 ~~~-~~~---~~~~~~~~~ve~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~-~~~~g~iLVFl~~~~ei 590 (1197)
... ... .........+...+... .....+...+...+. ....+++||||++++.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a 452 (590)
T 3h1t_A 393 GDVDRFGREIPDGEYQTKDFERVIALK--------------------ARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHA 452 (590)
T ss_dssp ----------------CCSHHHHHHHH--------------------HTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHH
T ss_pred ccccccccccccccCCHHHhhhHhcCh--------------------HHHHHHHHHHHHHHHhcCCCccEEEEECCHHHH
Confidence 000 000 00000000000000000 001112222322233 34568999999999999
Q ss_pred HHHHHHHHcCCCC-CCCCceEEEeccCCCCHHHHHHhcCCCCCCceE---EEEeecccccccccCCEEEEEeCCCCCccc
Q 000991 591 NSLKDQLQAHPLL-GDPSRVLLLACHGSMASSEQRLIFDKPEDGVRK---IVLATNMAETSITINDVVFVIDCGKAKETS 666 (1197)
Q Consensus 591 ~~l~~~L~~~~~~-~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~k---VLVATniaEtGIdIPdV~~VId~G~~k~~~ 666 (1197)
+.+++.|...... .....-.+..+||.++ ++|+.+++.|++|..+ ||+||+++++|||+|+|++||..+.++
T Consensus 453 ~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~--- 528 (590)
T 3h1t_A 453 DEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN--- 528 (590)
T ss_dssp HHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC---
T ss_pred HHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCC---
Confidence 9999999753110 0000112677899876 4789999999998766 889999999999999999999855444
Q ss_pred ccCCCCCCCccccccCHhhHHhhhcccCCCCC
Q 000991 667 YDALNNTPCLLPSWISKAAARQRRGRAGRVQP 698 (1197)
Q Consensus 667 yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~ 698 (1197)
|...|.||+|||||.++
T Consensus 529 ---------------s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 529 ---------------SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ---------------CHHHHHHHHTTSCCCBG
T ss_pred ---------------ChHHHHHHHhhhcccCc
Confidence 77889999999999876
No 52
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=3.1e-25 Score=275.42 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=94.8
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccC----
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---- 651 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIP---- 651 (1197)
...++||||++++.++.+++.|... ++.+..+||.+...++..+.+.++.| .|+||||+|++|+||+
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~-------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~ 501 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNK-------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEG 501 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTT-------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTT
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHC-------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccch
Confidence 3568999999999999999999986 66688899999999988888888777 5999999999999999
Q ss_pred ----CEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 652 ----DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 652 ----dV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
++.+||++.+|. |...|.||+||+||.| +|.++.+++.++
T Consensus 502 V~~~ggl~VIn~d~p~------------------s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 502 VKELGGLAVVGTERHE------------------SRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SGGGTSEEEEESSCCS------------------SHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhcCCcEEEEecCCC------------------CHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 899999988886 7889999999999995 799998887543
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=1.5e-24 Score=268.69 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=95.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCC---
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIND--- 652 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPd--- 652 (1197)
...++||||++++.++.+++.|... ++....+||.....++..+.+.++.| .|+||||+|++|+||+.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~-------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn 510 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKA-------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGS 510 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHT-------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCC
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCc
Confidence 4568999999999999999999987 66688899999989998899999998 59999999999999997
Q ss_pred -----------------------------E-----EEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-
Q 000991 653 -----------------------------V-----VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ- 697 (1197)
Q Consensus 653 -----------------------------V-----~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~- 697 (1197)
| .+||++.+|. |+..|.||+||+||.|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pe------------------s~riy~qr~GRTGRqGd 572 (853)
T 2fsf_A 511 WQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHE------------------SRRIDNQLRGRSGRQGD 572 (853)
T ss_dssp HHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCS------------------SHHHHHHHHTTSSGGGC
T ss_pred hHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCC------------------CHHHHHhhccccccCCC
Confidence 4 6999988886 8889999999999995
Q ss_pred CCeEEEeccccc
Q 000991 698 PGECYHLYPRYV 709 (1197)
Q Consensus 698 ~G~cy~Lys~~~ 709 (1197)
||.+..+++.++
T Consensus 573 ~G~s~~fls~eD 584 (853)
T 2fsf_A 573 AGSSRFYLSMED 584 (853)
T ss_dssp CEEEEEEEETTS
T ss_pred CeeEEEEecccH
Confidence 799988877543
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.90 E-value=1.8e-23 Score=259.05 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=93.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCE--
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDV-- 653 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV-- 653 (1197)
...++|||+++++.++.+++.|... ++....+||.....++..+.+.++.| .|+||||+|++|+||+.+
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~-------Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~ 529 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKR-------RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGN 529 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHT-------TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCC
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHC-------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCC
Confidence 4568999999999999999999987 66688899999888888888999988 699999999999999964
Q ss_pred --------------------------------------------------EEEEeCCCCCcccccCCCCCCCccccccCH
Q 000991 654 --------------------------------------------------VFVIDCGKAKETSYDALNNTPCLLPSWISK 683 (1197)
Q Consensus 654 --------------------------------------------------~~VId~G~~k~~~yD~~~~~~~l~~~~iSk 683 (1197)
.+||++.+|. |+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pe------------------s~ 591 (922)
T 1nkt_A 530 VDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHE------------------SR 591 (922)
T ss_dssp HHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCS------------------SH
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCC------------------CH
Confidence 6999988876 88
Q ss_pred hhHHhhhcccCCCC-CCeEEEecccc
Q 000991 684 AAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 684 as~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
..|.||+||+||.| ||.+..+++.+
T Consensus 592 riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 592 RIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHHHHhcccccCCCCeeEEEEechh
Confidence 89999999999996 79988887754
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.89 E-value=5.8e-23 Score=267.01 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCc--eEEEE
Q 000991 562 NLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGV--RKIVL 639 (1197)
Q Consensus 562 ~li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~--~kVLV 639 (1197)
......+..++.....+++||||++...++.+++.|... .++.+..+||+|+..+|..+++.|++|. .+|||
T Consensus 488 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv 561 (968)
T 3dmq_A 488 DPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL 561 (968)
T ss_dssp SHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEE
Confidence 345556666776677889999999999999999999853 1566899999999999999999999998 99999
Q ss_pred eecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC-C--eEEEeccccch
Q 000991 640 ATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP-G--ECYHLYPRYVY 710 (1197)
Q Consensus 640 ATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~-G--~cy~Lys~~~~ 710 (1197)
||+++++|||+|++++||+++.|. +.+.|.||+||+||.|. | .+|.++.....
T Consensus 562 aT~v~~~GlDl~~~~~VI~~d~p~------------------~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 562 CSEIGSEGRNFQFASHMVMFDLPF------------------NPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp CSCCTTCSSCCTTCCEEECSSCCS------------------SHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred ecchhhcCCCcccCcEEEEecCCC------------------CHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 999999999999999999955443 67788999999999964 4 34555554443
No 56
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=1.2e-23 Score=227.09 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=149.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni 643 (1197)
....+.+++.....+++||||+++.+++.+++.|... ++.+.++||+|++.+|..+++.|++|.++|||||++
T Consensus 18 k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~ 90 (212)
T 3eaq_A 18 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV 90 (212)
T ss_dssp HHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH-------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh
Confidence 4455666777777899999999999999999999875 566899999999999999999999999999999999
Q ss_pred cccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccch------------
Q 000991 644 AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVY------------ 710 (1197)
Q Consensus 644 aEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~------------ 710 (1197)
+++|||||+|++||++|.|. |.++|.||+|||||.+ +|.||.+|+....
T Consensus 91 ~~~Gidi~~v~~Vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRLPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp TTCSSSCCCBSEEEESSCCS------------------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred hhcCCCCccCcEEEECCCCc------------------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 99999999999999977776 7889999999999996 8999999987652
Q ss_pred --hhhhhcCCccccccchhhhhHHhhhcCCC---CHHHHHhhhcCCCChhhHHHHHHHH
Q 000991 711 --DAFADYQLPELLRTPLQSLCLQIKSLQLG---SISEFLSRALQPPEPLSVKNAIEYL 764 (1197)
Q Consensus 711 --~~l~~~~~PEIlr~~L~~l~L~lk~l~~~---~i~~fL~~~ldpP~~~~v~~Al~~L 764 (1197)
..+.....|||.+..+..++++++.+..+ ...+++..++++|+++.+..|+..|
T Consensus 153 ~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 153 RFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 33444566789999999999999887653 3445566778889999999888765
No 57
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=3.3e-23 Score=234.86 Aligned_cols=181 Identities=19% Similarity=0.234 Sum_probs=150.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni 643 (1197)
....+..++.....+++||||+++++++.+++.|... ++.+.++||+|++.+|..+++.|++|.++||||||+
T Consensus 15 K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v 87 (300)
T 3i32_A 15 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV 87 (300)
T ss_dssp HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT-------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech
Confidence 4455666666667899999999999999999999876 567999999999999999999999999999999999
Q ss_pred cccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccc-------------
Q 000991 644 AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV------------- 709 (1197)
Q Consensus 644 aEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~------------- 709 (1197)
+++|||||+|++||++|.|. |..+|.||+|||||.+ +|.||.+|+...
T Consensus 88 a~~Gidi~~v~~VI~~d~p~------------------s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCS------------------STTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred hhcCccccceeEEEEcCCCC------------------CHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 99999999999999977776 6678999999999995 899999998765
Q ss_pred -hhhhhhcCCccccccchhhhhHHhhhcCCCCHHH---HHhhhcCCCChhhHHHHHHHHHHhcc
Q 000991 710 -YDAFADYQLPELLRTPLQSLCLQIKSLQLGSISE---FLSRALQPPEPLSVKNAIEYLQIIGA 769 (1197)
Q Consensus 710 -~~~l~~~~~PEIlr~~L~~l~L~lk~l~~~~i~~---fL~~~ldpP~~~~v~~Al~~L~~lGa 769 (1197)
++.+.....|||.+..+..++++++.++.+++.. ++..++++|+.+.+..|+..|.....
T Consensus 150 ~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 150 RFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp CCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred cceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 3334556678999999999999998876544433 34566778999999999999966544
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.85 E-value=6.1e-21 Score=231.35 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=89.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC-ceE-EEEeecccccccccCCE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-VRK-IVLATNMAETSITINDV 653 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G-~~k-VLVATniaEtGIdIPdV 653 (1197)
.+.++|||+.....++.+.+.|.... ++.+..+||+++.++|+.+++.|++| ..+ +|+||+++++|+|+|++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 46799999999999999999997520 23467899999999999999999888 454 78999999999999999
Q ss_pred EEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC---CeEEEeccccchh
Q 000991 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP---GECYHLYPRYVYD 711 (1197)
Q Consensus 654 ~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~---G~cy~Lys~~~~~ 711 (1197)
++||. ||++.+... +.||+||++|.|+ ..+|+|+++...+
T Consensus 414 ~~vi~--------~d~~~~~~~----------~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 414 NRVIH--------FDRWWNPAV----------EDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp SEEEE--------SSCCSCC-------------CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred CEEEE--------eCCCCCcch----------HHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 99999 555554444 4499999999964 3468888776544
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.85 E-value=7.2e-21 Score=246.20 Aligned_cols=314 Identities=12% Similarity=0.086 Sum_probs=177.9
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEee-e-ccccCC
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVR-L-EGMKGR 390 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir-~-e~~~~~ 390 (1197)
++.++|+++||||||.++ .+++..+. ..+...+++|++||++|+.|+.+.+.......+.. +.... . ......
T Consensus 300 ~~~gli~~~TGSGKT~t~-~~l~~ll~--~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~v~~--~~s~~~l~~~L~~~ 374 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTS-FKAARLAT--ELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDSVNG--SENTAGLKRNLDKD 374 (1038)
T ss_dssp GGSEEEEECTTSSHHHHH-HHHHHHHT--TCTTCCEEEEEECGGGCCHHHHHHHHTTSTTCSSS--SCCCHHHHHHHHCS
T ss_pred CCCEEEEecCCCCHHHHH-HHHHHHHH--hcCCCceEEEEeCcHHHHHHHHHHHHHhccccccc--ccCHHHHHHHhcCC
Confidence 368999999999999887 55554332 12233578888899999999988876533221111 11110 0 111134
Q ss_pred CceEEEEcchHHHHHHhcCC---CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCCH-------HH
Q 000991 391 DTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNA-------EL 460 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~~-------~~ 460 (1197)
+.+|+|+|++.|...+.... .+....+||||||| |+...++.. .+....|+.++++||||+.. ..
T Consensus 375 ~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~~~----~I~~~~p~a~~lgfTATP~~~~~~~~~~~ 449 (1038)
T 2w00_A 375 DNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEAQK----NLKKKFKRYYQFGFTGTPIFPENALGSET 449 (1038)
T ss_dssp SCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHHHH----HHHHHCSSEEEEEEESSCCCSTTCTTSCC
T ss_pred CCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHHHH----HHHHhCCcccEEEEeCCccccccchhhhH
Confidence 67999999999998775432 35678999999999 544434333 33334467899999999832 24
Q ss_pred HHhhhCCCCccc-------cCCcccceeeeehHhHHHHhhhccCcccccccchhhhhHHHHHHHHHHHhhhhhhHHHHHH
Q 000991 461 FSSYFGGAPMLH-------IPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVED 533 (1197)
Q Consensus 461 f~~yf~~~pvi~-------i~gr~~PV~~~yledi~~l~~~~l~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~ve~ 533 (1197)
...+||.. +.. -.|...|+...|.. +. .. ..... .... ..
T Consensus 450 t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~y~~---------------v~---~~--~~~~~------~e~d------~~ 496 (1038)
T 2w00_A 450 TASVFGRE-LHSYVITDAIRDEKVLKFKVDYND---------------VR---PQ--FKSLE------TETD------EK 496 (1038)
T ss_dssp HHHHHCSE-EEEECHHHHHHHTSSCCEEEEECC---------------CC---GG--GHHHH------TCCC------HH
T ss_pred HHHHhCCe-eEeecHHHHHhCCCcCCeEEEEEe---------------cc---ch--hhhcc------cccc------HH
Confidence 55677641 100 01222333322211 00 00 00000 0000 00
Q ss_pred HHHhhhhcchhhhhhhccccCCCCCCchhhH-HHHHHHHHhhc-------CCCcEEEEeCCHHHHHHHHHHHHcCCC---
Q 000991 534 ALEAADFREYSVQTQQSLSCWNPDSIGFNLI-EHVLCHIVKKE-------RPGAVLVFMTGWDDINSLKDQLQAHPL--- 602 (1197)
Q Consensus 534 ~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li-~~ll~~i~~~~-------~~g~iLVFl~~~~ei~~l~~~L~~~~~--- 602 (1197)
...... ....+. .......+ ..++.+..... ..+++||||+++..+..+++.|.....
T Consensus 497 ~~~~i~----------~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~ 565 (1038)
T 2w00_A 497 KLSAAE----------NQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAA 565 (1038)
T ss_dssp HHHHTC----------STTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH----------HHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhc
Confidence 000000 000000 00001111 12223322221 345899999999999999999875410
Q ss_pred --CCCCCceEE-EeccCC----------C----------CH-----------------------------HHHHHhcCCC
Q 000991 603 --LGDPSRVLL-LACHGS----------M----------AS-----------------------------SEQRLIFDKP 630 (1197)
Q Consensus 603 --~~~~~~~~I-~~lHs~----------L----------~~-----------------------------~er~~v~~~f 630 (1197)
.....++.+ ..+|++ + +. .+|+.+.++|
T Consensus 566 ~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~F 645 (1038)
T 2w00_A 566 NKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRV 645 (1038)
T ss_dssp TTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHH
T ss_pred ccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 011112333 345542 2 22 1377888899
Q ss_pred CCCceEEEEeecccccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCC
Q 000991 631 EDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPG 699 (1197)
Q Consensus 631 ~~G~~kVLVATniaEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G 699 (1197)
++|..+|||+|+++.||+|+|.+. |+..++| .+...+.||+||+||..+|
T Consensus 646 k~g~i~ILIvvd~lltGfDiP~l~-tlylDkp------------------l~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 646 KNQDIDLLIVVGMFLTGFDAPTLN-TLFVDKN------------------LRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HTTSSSEEEESSTTSSSCCCTTEE-EEEEESC------------------CCHHHHHHHHHTTCCCCCT
T ss_pred HcCCCeEEEEcchHHhCcCccccc-EEEEccC------------------CCccceeehhhccCcCCCC
Confidence 999999999999999999999995 5543333 2566888999999999764
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.79 E-value=2e-18 Score=209.96 Aligned_cols=107 Identities=24% Similarity=0.313 Sum_probs=91.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccC----
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIN---- 651 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIP---- 651 (1197)
...++|||+++++.++.+++.|... ++....+||+....++..+...++.| .|+||||+|++|+||+
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~-------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~ 543 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKK-------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPG 543 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTT-------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHC-------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcc
Confidence 3568999999999999999999986 56678899997777776666666666 5999999999999998
Q ss_pred ----CEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccc
Q 000991 652 ----DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYV 709 (1197)
Q Consensus 652 ----dV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~ 709 (1197)
++.+||++.+|. |...|.||+|||||.| +|.++.+++.++
T Consensus 544 V~~~GglhVInte~Pe------------------s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 544 VAELGGLCIIGTERHE------------------SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TTTTTSCEEEESSCCS------------------SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred hhhcCCCEEEecCCCC------------------CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 677999988887 7888999999999996 799988887654
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=7.3e-18 Score=210.69 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=94.9
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCce---EEEEeecccccccccC
Q 000991 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR---KIVLATNMAETSITIN 651 (1197)
Q Consensus 575 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~---kVLVATniaEtGIdIP 651 (1197)
..+.++|||+.....++.+.+.|... ++.+..+||+++.++|+.+++.|.+|.. .+|+||.++++|||++
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~-------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~ 486 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLI 486 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH-------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCT
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC-------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccc
Confidence 35679999999999999999999875 5668889999999999999999988764 5899999999999999
Q ss_pred CEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC---CeEEEeccccchh
Q 000991 652 DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP---GECYHLYPRYVYD 711 (1197)
Q Consensus 652 dV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~---G~cy~Lys~~~~~ 711 (1197)
++++||.++.+. +.+.+.|++||++|.|+ ..+|+|++....+
T Consensus 487 ~a~~Vi~~d~~w------------------np~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiE 531 (644)
T 1z3i_X 487 GANRLVMFDPDW------------------NPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531 (644)
T ss_dssp TEEEEEECSCCS------------------SHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred cCCEEEEECCCC------------------CccHHHHHHHhhhhcCCCCceEEEEEEECCCHH
Confidence 999999944332 67788899999999975 4678888776544
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.79 E-value=3.3e-19 Score=192.69 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC---Cc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG---EK 373 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g---~~ 373 (1197)
-..+.+|.+++..+.+++++++++|||||||+++.+++++.+... ....++++++|+++|+.|+++.+..... ..
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 112 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLAPTRELALQIQKVVMALAFHMDIK 112 (224)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEEEEECCHHHHHHHHHHHHHHhcccCce
Confidence 345677888888999999999999999999999999998866432 2344677777999999999998876532 22
Q ss_pred ccceeeeEeeec-cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEE
Q 000991 374 LGESVGYKVRLE-GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 374 lg~~VGy~ir~e-~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIl 451 (1197)
++..+|.....+ .....+++|+|+||+.|++.+.... .+.++++|||||||.. .+.++...+.+.+....++.++|+
T Consensus 113 ~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~~~~l~~i~~~~~~~~~~i~ 191 (224)
T 1qde_A 113 VHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM-LSSGFKEQIYQIFTLLPPTTQVVL 191 (224)
T ss_dssp EEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-HHTTCHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH-hhhhhHHHHHHHHHhCCccCeEEE
Confidence 222233211111 1112348999999999999887655 6889999999999952 122222222222222346789999
Q ss_pred ecccCCHH---HHHhhhCCCCccccCCc
Q 000991 452 MSATLNAE---LFSSYFGGAPMLHIPGF 476 (1197)
Q Consensus 452 mSATl~~~---~f~~yf~~~pvi~i~gr 476 (1197)
||||++.+ .+..|+++...+.+.+.
T Consensus 192 lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 192 LSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999653 34456655444444433
No 63
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=197.36 Aligned_cols=173 Identities=21% Similarity=0.178 Sum_probs=122.9
Q ss_pred cChhhHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHH
Q 000991 283 ESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362 (1197)
Q Consensus 283 ~s~~~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qv 362 (1197)
-++.+.+.+....-...+.+|.++++.+.+++++++++|||||||+++.+++++.+.... ...+++|++|+|+||.|+
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--~~~~~lil~Ptr~L~~q~ 127 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--QRLFALVLTPTRELAFQI 127 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--CSSCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--CCceEEEEeCCHHHHHHH
Confidence 344555555555555678888999999999999999999999999999999998876533 334577777999999999
Q ss_pred HHHHHHHhCCcccceeeeEeee------ccccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHH
Q 000991 363 SERVAAERGEKLGESVGYKVRL------EGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLL 434 (1197)
Q Consensus 363 a~rVa~e~g~~lg~~VGy~ir~------e~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll 434 (1197)
++++..... ..+..++.-... ......+++|+|+|||+|++.+.... .+.++++|||||||. -.+.++..
T Consensus 128 ~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~-l~~~~~~~ 205 (249)
T 3ber_A 128 SEQFEALGS-SIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR-ILNMDFET 205 (249)
T ss_dssp HHHHHHHHG-GGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH-HHHTTCHH
T ss_pred HHHHHHHhc-cCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh-hhccChHH
Confidence 988866532 222222211111 11112468999999999999887644 678999999999994 23334444
Q ss_pred HHHHHHcccCccceEEEecccCCHH
Q 000991 435 IVLKELLPRRPELRLILMSATLNAE 459 (1197)
Q Consensus 435 ~lLr~ll~~r~~lklIlmSATl~~~ 459 (1197)
.+.+.+....++.++++||||++.+
T Consensus 206 ~l~~i~~~~~~~~~~l~~SAT~~~~ 230 (249)
T 3ber_A 206 EVDKILKVIPRDRKTFLFSATMTKK 230 (249)
T ss_dssp HHHHHHHSSCSSSEEEEEESSCCHH
T ss_pred HHHHHHHhCCCCCeEEEEeccCCHH
Confidence 4333333344678999999999654
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=191.55 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHH----ccCCceEEEecchHHHHHHHHHHHHHHHhC--
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEA----ARGAACSIICTQPRRISAMAVSERVAAERG-- 371 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~----~~g~~~~IivtqPrR~LA~qva~rVa~e~g-- 371 (1197)
..+.+|.++++.+.+++++++++|||||||+++.++++..+... ......+++|++|+|+||.|+++++.....
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 121 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG 121 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 45667788888899999999999999999999999988766421 112344567777999999999999877642
Q ss_pred CcccceeeeEeeec--cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 372 EKLGESVGYKVRLE--GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 372 ~~lg~~VGy~ir~e--~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
.......|-....+ .....+++|+|+|||+|++.+..+. .+.++++|||||||.. .+.++...+.+.+...+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~-~~~~~~~~~~~i~~~~~~~~~ 200 (228)
T 3iuy_A 122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM-LDMEFEPQIRKILLDVRPDRQ 200 (228)
T ss_dssp CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHH-HHTTCHHHHHHHHHHSCSSCE
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHH-hccchHHHHHHHHHhCCcCCe
Confidence 22222222111110 1112457999999999999887665 6889999999999942 222233333333333456889
Q ss_pred EEEecccCCHH
Q 000991 449 LILMSATLNAE 459 (1197)
Q Consensus 449 lIlmSATl~~~ 459 (1197)
+++||||++.+
T Consensus 201 ~l~~SAT~~~~ 211 (228)
T 3iuy_A 201 TVMTSATWPDT 211 (228)
T ss_dssp EEEEESCCCHH
T ss_pred EEEEEeeCCHH
Confidence 99999999653
No 65
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=9.2e-19 Score=224.06 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=94.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCce---EEEEeecccccccccCC
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVR---KIVLATNMAETSITIND 652 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~---kVLVATniaEtGIdIPd 652 (1197)
.+.++|||+.....+..+.+.|... ++.+..+||+++..+|+.+++.|..|.. .+|+||.++++|||++.
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~-------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK-------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH-------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccc
Confidence 4569999999999999999999865 5567889999999999999999998543 59999999999999999
Q ss_pred EEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC---CCeEEEeccccchhh
Q 000991 653 VVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ---PGECYHLYPRYVYDA 712 (1197)
Q Consensus 653 V~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~cy~Lys~~~~~~ 712 (1197)
+++||. ||+.. +.+.+.||.|||+|.| +..+|+|+++...+.
T Consensus 644 a~~VI~--------~D~~w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 644 ADTVVI--------FDSDW----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp CCEEEE--------SSCCS----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred cceEEE--------ecCCC----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 999999 55443 4456779999999986 467889988876553
No 66
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.77 E-value=8.2e-18 Score=210.45 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=100.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~ 655 (1197)
.++++|||++++..++.+++.|... ++.+..+||++++.+|..+++.|+.|..+|||||+++++|+|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~-------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~l 510 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH-------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSL 510 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc-------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCE
Confidence 4579999999999999999999986 556888999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccc
Q 000991 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYV 709 (1197)
Q Consensus 656 VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~ 709 (1197)
||+++..+. ..+.|..+|.||+|||||.++|.|+.+++...
T Consensus 511 VI~~d~d~~-------------G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 511 VAILDADKE-------------GFLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp EEETTTTSC-------------SGGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred EEEeCCccc-------------CCCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 999765431 11347889999999999999999999987643
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.77 E-value=5.8e-19 Score=192.61 Aligned_cols=164 Identities=16% Similarity=0.157 Sum_probs=113.5
Q ss_pred hhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc--cCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 294 RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA--RGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 294 R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~--~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
+.--..+.+|.+++..+.+++++++++|||||||+++.+++++.+.... .....+++|++|+|+|+.|+++.+....
T Consensus 43 ~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~- 121 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG- 121 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh-
Confidence 3344567788889999999999999999999999999999998876421 1123457777799999999999886543
Q ss_pred CcccceeeeEeee-----ccccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcccC
Q 000991 372 EKLGESVGYKVRL-----EGMKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR 444 (1197)
Q Consensus 372 ~~lg~~VGy~ir~-----e~~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r 444 (1197)
...+..++..... +.....+++|+|+|||.|++.+.... .+.++++|||||||.. .+.++...+.+.+....
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~-~~~~~~~~~~~i~~~~~ 200 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI-LDMGFADTMNAVIENLP 200 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHH-HHTTTHHHHHHHHHTSC
T ss_pred CCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHH-hcCCcHHHHHHHHHhCC
Confidence 2222333321111 11112468999999999999887653 6789999999999942 22222222222222234
Q ss_pred ccceEEEecccCCHH
Q 000991 445 PELRLILMSATLNAE 459 (1197)
Q Consensus 445 ~~lklIlmSATl~~~ 459 (1197)
++.++++||||++.+
T Consensus 201 ~~~~~l~~SAT~~~~ 215 (236)
T 2pl3_A 201 KKRQTLLFSATQTKS 215 (236)
T ss_dssp TTSEEEEEESSCCHH
T ss_pred CCCeEEEEEeeCCHH
Confidence 578899999999653
No 68
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=197.80 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 299 SYKERDALLKAISEN--QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~--~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
.+..|.+++..+..+ ++++++||||||||+++.+++++.+..... .+.++|+.|||+||.|+++.+........+.
T Consensus 115 pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~--~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~ 192 (300)
T 3fmo_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--YPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (300)
T ss_dssp CCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCC--CceEEEEcCcHHHHHHHHHHHHHHHhhCCCc
Confidence 445567777888776 999999999999999999999987653333 3356666699999999998886654332233
Q ss_pred eeeeEeeecc---ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEE
Q 000991 377 SVGYKVRLEG---MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 377 ~VGy~ir~e~---~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIl 451 (1197)
.+++.+.... .....++|+|||||+|++.+.... .+.++++|||||||...-...+...+...+....++.|+|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~ 272 (300)
T 3fmo_B 193 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLL 272 (300)
T ss_dssp CEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEE
T ss_pred EEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEE
Confidence 3333332221 223457899999999999997644 57899999999999531112333333333333456789999
Q ss_pred ecccCCHH--HHHhhh
Q 000991 452 MSATLNAE--LFSSYF 465 (1197)
Q Consensus 452 mSATl~~~--~f~~yf 465 (1197)
||||++.+ .|++.|
T Consensus 273 ~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 273 FSATFEDSVWKFAQKV 288 (300)
T ss_dssp EESCCCHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHH
Confidence 99999643 444443
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.76 E-value=6.2e-19 Score=190.25 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=114.9
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 287 GQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 287 ~~~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
..+.+....-...+.+|.++++.+.+++++++++|||||||+++.+++++.+... ....+++|+.|+|+|+.|+++.+
T Consensus 15 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~ 92 (219)
T 1q0u_A 15 IIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAPTRELATQIYHET 92 (219)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcCcHHHHHHHHHHH
Confidence 3344444444456778888899999999999999999999999999998876432 23345677779999999999988
Q ss_pred HHHhCCcc---cceeeeEeeec------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHH
Q 000991 367 AAERGEKL---GESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIV 436 (1197)
Q Consensus 367 a~e~g~~l---g~~VGy~ir~e------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~l 436 (1197)
.+...... +..++...... .....+++|+|+|||.|.+.+.... .+.++++|||||||.. .+.++...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~-~~~~~~~~l 171 (219)
T 1q0u_A 93 LKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM-LDMGFITDV 171 (219)
T ss_dssp HHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH-HHTTCHHHH
T ss_pred HHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH-hhhChHHHH
Confidence 76653210 12222111111 1112367899999999999887654 5788999999999952 112222222
Q ss_pred HHHHcccCccceEEEecccCCHH
Q 000991 437 LKELLPRRPELRLILMSATLNAE 459 (1197)
Q Consensus 437 Lr~ll~~r~~lklIlmSATl~~~ 459 (1197)
.+.+....++.++++||||++.+
T Consensus 172 ~~i~~~~~~~~~~l~~SAT~~~~ 194 (219)
T 1q0u_A 172 DQIAARMPKDLQMLVFSATIPEK 194 (219)
T ss_dssp HHHHHTSCTTCEEEEEESCCCGG
T ss_pred HHHHHhCCcccEEEEEecCCCHH
Confidence 22222234578999999999543
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=2e-18 Score=183.92 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
-..+.+|.++++.+.+++++++++|||||||+++..++++.+... ....+++++.|+++|+.|+++.+........+.
T Consensus 24 ~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 101 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVPTRELALQVSQICIQVSKHMGGA 101 (206)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSC
T ss_pred CCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCc
Confidence 356678888899999999999999999999999999998765322 233456777799999999999887665322122
Q ss_pred eeeeEeeec------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccce
Q 000991 377 SVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELR 448 (1197)
Q Consensus 377 ~VGy~ir~e------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lk 448 (1197)
.++...... .....+++|+|+||+.|.+.+.... .+.++++|||||||+. .+.++... +..++. ..++.+
T Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~-~~~~~~~~-l~~i~~~~~~~~~ 179 (206)
T 1vec_A 102 KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL-LSQDFVQI-MEDIILTLPKNRQ 179 (206)
T ss_dssp CEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHH-TSTTTHHH-HHHHHHHSCTTCE
T ss_pred eEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHh-HhhCcHHH-HHHHHHhCCccce
Confidence 232211111 1123467999999999999887655 6889999999999953 22233322 223322 334789
Q ss_pred EEEecccCCHH
Q 000991 449 LILMSATLNAE 459 (1197)
Q Consensus 449 lIlmSATl~~~ 459 (1197)
+|+||||++.+
T Consensus 180 ~l~~SAT~~~~ 190 (206)
T 1vec_A 180 ILLYSATFPLS 190 (206)
T ss_dssp EEEEESCCCHH
T ss_pred EEEEEeeCCHH
Confidence 99999999654
No 71
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.76 E-value=6.9e-19 Score=191.59 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccce
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES 377 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~ 377 (1197)
..+.+|.++++.+.+++++++++|||||||+++.+++++.+... +...+++|+.|+++|+.|+++++........+..
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 123 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLSTQILILAPTREIAVQIHSVITAIGIKMEGLE 123 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCce
Confidence 35677888889999999999999999999999999998876432 2334677777999999999999876543221223
Q ss_pred eeeEee-----eccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCC---CCChhHHHHHHHHHcccCccce
Q 000991 378 VGYKVR-----LEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHER---GMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 378 VGy~ir-----~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR---~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
++.-.. .......+++|+|+|||.|++.+..+. .+.++++|||||||.. +...+.+..+++. ..++.+
T Consensus 124 ~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~---~~~~~~ 200 (230)
T 2oxc_A 124 CHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS---LPASKQ 200 (230)
T ss_dssp EEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHH---SCSSCE
T ss_pred EEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHh---CCCCCe
Confidence 321111 111112468999999999999887654 5788999999999952 2122223233322 234778
Q ss_pred EEEecccCCHH---HHHhhhCC
Q 000991 449 LILMSATLNAE---LFSSYFGG 467 (1197)
Q Consensus 449 lIlmSATl~~~---~f~~yf~~ 467 (1197)
+++||||++.+ .+..||++
T Consensus 201 ~l~lSAT~~~~~~~~~~~~~~~ 222 (230)
T 2oxc_A 201 MLAVSATYPEFLANALTKYMRD 222 (230)
T ss_dssp EEEEESCCCHHHHHHHTTTCSS
T ss_pred EEEEEeccCHHHHHHHHHHcCC
Confidence 99999999754 24445543
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=187.82 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
-..+.+|.++++.+.+++++++++|||||||+++.+++++.+.. ......+++|+.|+|+||.|+++++..... ..+.
T Consensus 50 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~ 127 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-PANKGFRALIISPTRELASQIHRELIKISE-GTGF 127 (245)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS-CCSSSCCEEEECSSHHHHHHHHHHHHHHTT-TSCC
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh-cccCCceEEEEeCCHHHHHHHHHHHHHHhc-ccCc
Confidence 34567788888899999999999999999999999999887642 222344677777999999999998866543 2222
Q ss_pred eeeeEe-------eeccccCCCceEEEEcchHHHHHHhcCC---CCCCccEEEEecCCCCCCC--hhHHHHHHHHHcc-c
Q 000991 377 SVGYKV-------RLEGMKGRDTRLMFCTTGILLRRLLVDR---SLRGVTHVIVDEIHERGMN--EDFLLIVLKELLP-R 443 (1197)
Q Consensus 377 ~VGy~i-------r~e~~~~~~t~Ilv~Tpg~LLr~L~~d~---~L~~is~VIIDEaHeR~~~--~D~Ll~lLr~ll~-~ 443 (1197)
.++... +.......+++|+|+|||+|...+.... .+.++++|||||||+..-. .++...+.+.+.. .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~ 207 (245)
T 3dkp_A 128 RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT 207 (245)
T ss_dssp CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC
T ss_pred eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC
Confidence 222111 1122234568999999999999987763 6789999999999963110 2344443333222 2
Q ss_pred CccceEEEecccCCHH
Q 000991 444 RPELRLILMSATLNAE 459 (1197)
Q Consensus 444 r~~lklIlmSATl~~~ 459 (1197)
.++.++++||||++.+
T Consensus 208 ~~~~~~~~~SAT~~~~ 223 (245)
T 3dkp_A 208 SHKVRRAMFSATFAYD 223 (245)
T ss_dssp CTTCEEEEEESSCCHH
T ss_pred CCCcEEEEEeccCCHH
Confidence 3578999999999643
No 73
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.75 E-value=2.1e-18 Score=188.82 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccccee
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV 378 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~V 378 (1197)
.+.+|.+++..+.+++++++++|||||||+++.+++++.+... ....+++|++|+|+|+.|+++.+.... ...+..+
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~ 129 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQALVLAPTRELAQQIQKVILALG-DYMGATC 129 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEEECcHHHHHHHHHHHHHHh-hhcCceE
Confidence 5667788888888999999999999999999999998865322 233467777799999999999886643 2222222
Q ss_pred eeEee-------eccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCC--CChhHHHHHHHHHcccCccce
Q 000991 379 GYKVR-------LEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERG--MNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 379 Gy~ir-------~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~--~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
+.... ........++|+|+|||.|++.+.... .+.++++|||||||... -..+.+..+++. ..++.+
T Consensus 130 ~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~---~~~~~~ 206 (237)
T 3bor_A 130 HACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK---LNTSIQ 206 (237)
T ss_dssp EEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHH---SCTTCE
T ss_pred EEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHh---CCCCCe
Confidence 21111 111122347999999999999887654 67889999999999521 111223333332 346789
Q ss_pred EEEecccCCHH
Q 000991 449 LILMSATLNAE 459 (1197)
Q Consensus 449 lIlmSATl~~~ 459 (1197)
+|+||||++.+
T Consensus 207 ~i~~SAT~~~~ 217 (237)
T 3bor_A 207 VVLLSATMPTD 217 (237)
T ss_dssp EEEECSSCCHH
T ss_pred EEEEEEecCHH
Confidence 99999999653
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.74 E-value=2.4e-18 Score=183.28 Aligned_cols=180 Identities=23% Similarity=0.192 Sum_probs=118.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-cCCceEEEecchHHHHHHHHHHHHH
Q 000991 289 KMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-RGAACSIICTQPRRISAMAVSERVA 367 (1197)
Q Consensus 289 ~~~~~R~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-~g~~~~IivtqPrR~LA~qva~rVa 367 (1197)
+.+....--..+.+|.++++.+.+++++++++|||||||+++..++++.+.... .+...+++|++|+++|+.|+++++.
T Consensus 14 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 14 EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELT 93 (207)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 334433444567788888899999999999999999999999999988654211 1234567777799999999999997
Q ss_pred HHhCC-cccceeeeEee--eccccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHccc
Q 000991 368 AERGE-KLGESVGYKVR--LEGMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR 443 (1197)
Q Consensus 368 ~e~g~-~lg~~VGy~ir--~e~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~ 443 (1197)
...+. .+....|.... .......+++|+|+||+.+++.+.... .+.++++|||||||.. .+.++...+.+.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~~~~~~~i~~~~ 172 (207)
T 2gxq_A 94 AVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM-LSMGFEEEVEALLSAT 172 (207)
T ss_dssp HHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH-HHTTCHHHHHHHHHTS
T ss_pred HHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh-hccchHHHHHHHHHhC
Confidence 76542 11111121000 000111357999999999999887654 6889999999999952 1122222222222223
Q ss_pred CccceEEEecccCCH--HHHHhhhCCCC
Q 000991 444 RPELRLILMSATLNA--ELFSSYFGGAP 469 (1197)
Q Consensus 444 r~~lklIlmSATl~~--~~f~~yf~~~p 469 (1197)
.++.++|+||||++. +.+.+.|-+.|
T Consensus 173 ~~~~~~i~~SAT~~~~~~~~~~~~~~~p 200 (207)
T 2gxq_A 173 PPSRQTLLFSATLPSWAKRLAERYMKNP 200 (207)
T ss_dssp CTTSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred CccCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 457899999999964 34444443333
No 75
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.74 E-value=1.6e-18 Score=190.15 Aligned_cols=160 Identities=21% Similarity=0.142 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc---cCCceEEEecchHHHHHHHHHHHHHHHh---CC
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA---RGAACSIICTQPRRISAMAVSERVAAER---GE 372 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~---~g~~~~IivtqPrR~LA~qva~rVa~e~---g~ 372 (1197)
.+.+|.+++..+.+++++++++|||||||+++.++++..+.... ++...+++|+.|+|+||.|+++.+.... +.
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 131 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRL 131 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCc
Confidence 45677888888889999999999999999999999998775321 1234456666799999999988776543 32
Q ss_pred cccceeeeEeeec--cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceE
Q 000991 373 KLGESVGYKVRLE--GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRL 449 (1197)
Q Consensus 373 ~lg~~VGy~ir~e--~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lkl 449 (1197)
.+...+|.....+ .....+++|+|+|||+|++.+.... .+.++++|||||||.. .+.++...+.+.+...+++.++
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l-~~~~~~~~~~~i~~~~~~~~q~ 210 (242)
T 3fe2_A 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM-LDMGFEPQIRKIVDQIRPDRQT 210 (242)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHH-HHTTCHHHHHHHHTTSCSSCEE
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHH-hhhCcHHHHHHHHHhCCccceE
Confidence 2222222100000 0111357999999999999887665 6899999999999952 2223333333333344578899
Q ss_pred EEecccCCHH
Q 000991 450 ILMSATLNAE 459 (1197)
Q Consensus 450 IlmSATl~~~ 459 (1197)
++||||++.+
T Consensus 211 ~~~SAT~~~~ 220 (242)
T 3fe2_A 211 LMWSATWPKE 220 (242)
T ss_dssp EEEESCCCHH
T ss_pred EEEEeecCHH
Confidence 9999999653
No 76
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=190.17 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc--CCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR--GAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~--g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
-..+.+|.+++..+.++++++++||||||||+++.+++++.+..... ....+++|++|+|+||.|+++.+.+... ..
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~ 153 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT-HH 153 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT-TC
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh-hc
Confidence 33567778888888889999999999999999999999988765221 1234577777999999999998876543 23
Q ss_pred cceeeeEeeecc------ccCCCceEEEEcchHHHHHHhcCC--CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCcc
Q 000991 375 GESVGYKVRLEG------MKGRDTRLMFCTTGILLRRLLVDR--SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPE 446 (1197)
Q Consensus 375 g~~VGy~ir~e~------~~~~~t~Ilv~Tpg~LLr~L~~d~--~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~ 446 (1197)
+..++....... ....+++|+|+|||+|++.+...+ .+.++++|||||||.. .+.++...+.+.+....++
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l-~~~~~~~~l~~i~~~~~~~ 232 (262)
T 3ly5_A 154 VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRI-LDVGFEEELKQIIKLLPTR 232 (262)
T ss_dssp CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHH-HHTTCHHHHHHHHHHSCSS
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHH-hhhhHHHHHHHHHHhCCCC
Confidence 333332111111 111347899999999999887755 6789999999999942 2222222222222223456
Q ss_pred ceEEEecccCCHH
Q 000991 447 LRLILMSATLNAE 459 (1197)
Q Consensus 447 lklIlmSATl~~~ 459 (1197)
.++|+||||++.+
T Consensus 233 ~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 233 RQTMLFSATQTRK 245 (262)
T ss_dssp SEEEEECSSCCHH
T ss_pred CeEEEEEecCCHH
Confidence 8999999999654
No 77
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=2.7e-18 Score=185.15 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccccee
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESV 378 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~V 378 (1197)
.+.+|.++++.+.+++++++++|||||||+++..++++.+.. .....+++|++|+++|+.|+++.+........+..+
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 114 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP--VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc--cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceE
Confidence 567788888888899999999999999999999999876531 122346777779999999999988766432212333
Q ss_pred eeEeeec-------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEE
Q 000991 379 GYKVRLE-------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLI 450 (1197)
Q Consensus 379 Gy~ir~e-------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklI 450 (1197)
+.-.... ......++|+|+||+.|+..+.... .+.++++|||||||...-..++...+.+.+....++.++|
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i 194 (220)
T 1t6n_A 115 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 194 (220)
T ss_dssp EEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEE
T ss_pred EEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEE
Confidence 3111110 1112346999999999999887655 6889999999999964222343333322222234578999
Q ss_pred EecccCCH--HHHH-hhhCC
Q 000991 451 LMSATLNA--ELFS-SYFGG 467 (1197)
Q Consensus 451 lmSATl~~--~~f~-~yf~~ 467 (1197)
+||||++. +.+. .|+.+
T Consensus 195 ~~SAT~~~~~~~~~~~~~~~ 214 (220)
T 1t6n_A 195 MFSATLSKEIRPVCRKFMQD 214 (220)
T ss_dssp EEESCCCTTTHHHHHTTCSS
T ss_pred EEEeecCHHHHHHHHHHcCC
Confidence 99999943 3333 44443
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.73 E-value=7.5e-18 Score=173.85 Aligned_cols=123 Identities=21% Similarity=0.349 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni 643 (1197)
....+..++.....+++|||++++..++.+++.|... ++.+..+||+|+..+|..+++.|++|..+|||||++
T Consensus 22 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~ 94 (163)
T 2hjv_A 22 KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL-------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV 94 (163)
T ss_dssp HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG
T ss_pred HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh
Confidence 3445566666667789999999999999999999876 566899999999999999999999999999999999
Q ss_pred cccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 644 AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 644 aEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
+++|+|+|++++||+++.|. |..+|.||+|||||.+ +|.|+.+++.....
T Consensus 95 ~~~Gld~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 95 AARGIDIENISLVINYDLPL------------------EKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145 (163)
T ss_dssp GTTTCCCSCCSEEEESSCCS------------------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHH
T ss_pred hhcCCchhcCCEEEEeCCCC------------------CHHHHHHhccccCcCCCCceEEEEecHHHHH
Confidence 99999999999999966654 7789999999999995 79999999876543
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=8.6e-18 Score=175.36 Aligned_cols=128 Identities=17% Similarity=0.268 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc
Q 000991 565 EHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1197)
Q Consensus 565 ~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia 644 (1197)
...+..+++....+++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|..+|||||+++
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 94 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD-------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVC 94 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT-------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSC
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecch
Confidence 345666666667789999999999999999999976 5668999999999999999999999999999999999
Q ss_pred ccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 645 ETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 645 EtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
++|||+|++++||+++.|. +. ..+.|..+|.||+|||||.+ +|.|+.+++.....
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~--------~~----~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPV--------KQ----GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--------------CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred hcCCCcccCCEEEEeCCCC--------Cc----cccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 9999999999999966662 11 11248889999999999984 79999999876543
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.72 E-value=7.4e-18 Score=174.18 Aligned_cols=122 Identities=17% Similarity=0.286 Sum_probs=103.5
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc
Q 000991 565 EHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1197)
Q Consensus 565 ~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia 644 (1197)
...+..+++....+++|||+++++.++.+++.|... ++.+..+||+|+..+|..+++.|+.|..+|||||+++
T Consensus 18 ~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 90 (165)
T 1fuk_A 18 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND-------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 90 (165)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGG
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 344556666667789999999999999999999875 5668999999999999999999999999999999999
Q ss_pred ccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 645 ETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 645 EtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
++|+|+|++++||+++.|. |..+|.||+|||||.+ +|.|+.+++.....
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPA------------------NKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp TTTCCCCSCSEEEESSCCS------------------SGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred hcCCCcccCCEEEEeCCCC------------------CHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 9999999999999966654 5567779999999994 79999999876554
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.71 E-value=1.4e-17 Score=183.70 Aligned_cols=160 Identities=17% Similarity=0.102 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-------cCCceEEEecchHHHHHHHHHHHHHHHh
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-------RGAACSIICTQPRRISAMAVSERVAAER 370 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-------~g~~~~IivtqPrR~LA~qva~rVa~e~ 370 (1197)
..+.+|.++++.+.+++++++++|||||||+++..++++.+.... .....+++|+.|+|+||.|+++++....
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 456778888889999999999999999999999999998875422 1122457777799999999999887654
Q ss_pred CCcccceeeeEeeec------cccCCCceEEEEcchHHHHHHhcCC-CCCCccEEEEecCCCCC--CChhHHHHHHHHHc
Q 000991 371 GEKLGESVGYKVRLE------GMKGRDTRLMFCTTGILLRRLLVDR-SLRGVTHVIVDEIHERG--MNEDFLLIVLKELL 441 (1197)
Q Consensus 371 g~~lg~~VGy~ir~e------~~~~~~t~Ilv~Tpg~LLr~L~~d~-~L~~is~VIIDEaHeR~--~~~D~Ll~lLr~ll 441 (1197)
.. .+..++...... .....+++|+|+|||.|++.+.... .+.++++|||||||+.. ...+.+..+++.+
T Consensus 125 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~- 202 (253)
T 1wrb_A 125 LN-TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES- 202 (253)
T ss_dssp TT-SSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSS-
T ss_pred cc-CCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhc-
Confidence 32 122222111110 1112467999999999999887665 68899999999999521 0112222333221
Q ss_pred ccC--ccceEEEecccCCHH
Q 000991 442 PRR--PELRLILMSATLNAE 459 (1197)
Q Consensus 442 ~~r--~~lklIlmSATl~~~ 459 (1197)
... .+.++++||||++.+
T Consensus 203 ~~~~~~~~q~l~~SAT~~~~ 222 (253)
T 1wrb_A 203 NMPSGINRQTLMFSATFPKE 222 (253)
T ss_dssp CCCCGGGCEEEEEESSCCHH
T ss_pred cCCCCCCcEEEEEEEeCCHH
Confidence 112 268999999999654
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.70 E-value=2.4e-17 Score=171.76 Aligned_cols=120 Identities=19% Similarity=0.240 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM 643 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni 643 (1197)
....+..+++....+++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|..+|||||++
T Consensus 18 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 90 (172)
T 1t5i_A 18 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 90 (172)
T ss_dssp HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc-------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc
Confidence 4445666667677789999999999999999999876 566899999999999999999999999999999999
Q ss_pred cccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 644 AETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 644 aEtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
+++|+|+|++++||+++.|. |..+|.||+|||||.+ +|.|+.+++..
T Consensus 91 ~~~Gldi~~~~~Vi~~d~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 91 FGRGMDIERVNIAFNYDMPE------------------DSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp CSTTCCGGGCSEEEESSCCS------------------SHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred hhcCcchhhCCEEEEECCCC------------------CHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 99999999999999966664 7789999999999995 79999999764
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=173.17 Aligned_cols=120 Identities=22% Similarity=0.297 Sum_probs=91.2
Q ss_pred HHHHHHHhhc-CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc
Q 000991 566 HVLCHIVKKE-RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1197)
Q Consensus 566 ~ll~~i~~~~-~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia 644 (1197)
..+..++... ..+++|||++++..++.+++.|... ++.+..+||+|+..+|..+++.|++|..+|||||+++
T Consensus 34 ~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 106 (185)
T 2jgn_A 34 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 106 (185)
T ss_dssp HHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC--
T ss_pred HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChh
Confidence 3444555444 5789999999999999999999875 5669999999999999999999999999999999999
Q ss_pred ccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccch
Q 000991 645 ETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVY 710 (1197)
Q Consensus 645 EtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~ 710 (1197)
++|+|+|++++||+++.|. |..+|.||+|||||.+ +|.|+.+++....
T Consensus 107 ~~Gldi~~~~~VI~~d~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 107 ARGLDISNVKHVINFDLPS------------------DIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp ----CCCSBSEEEESSCCS------------------SHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred hcCCCcccCCEEEEeCCCC------------------CHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 9999999999999966554 7789999999999995 7999999987654
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.67 E-value=6.7e-17 Score=202.10 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=100.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccccccccCCEEE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF 655 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEtGIdIPdV~~ 655 (1197)
.++++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|+.|..+|+|||+++++|+|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~l 516 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSL 516 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCE
Confidence 4579999999999999999999986 556888999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCCCeEEEeccccc
Q 000991 656 VIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYV 709 (1197)
Q Consensus 656 VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~cy~Lys~~~ 709 (1197)
||+++..+ |. .+.|..+|.||+|||||.++|.|+.+++...
T Consensus 517 Vi~~d~d~---~G----------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 517 VAILDADK---EG----------FLRSERSLIQTIGRAARNAEGRVIMYADKIT 557 (661)
T ss_dssp EEETTTTC---CT----------TTTSHHHHHHHHHTTTTSTTCEEEEECSSCC
T ss_pred EEEeCccc---cc----------CCCCHHHHHHHhCcccCCCCCEEEEEEeCCC
Confidence 99976643 11 1337789999999999999999999987653
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=169.63 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=104.8
Q ss_pred hcCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHc-cCCceEEEecchHHHHHHH-HHHHHHHHhCC
Q 000991 295 RSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAA-RGAACSIICTQPRRISAMA-VSERVAAERGE 372 (1197)
Q Consensus 295 ~~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~-~g~~~~IivtqPrR~LA~q-va~rVa~e~g~ 372 (1197)
..++.+.+|.++++.+.+++++++++|||+|||+++..++++.+.... .+...+++++.|+++|+.| +.+.+......
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 457888999999999999999999999999999999988887665432 1223456666799999999 66666554433
Q ss_pred --cccceeeeEeeecc--ccCCCceEEEEcchHHHHHHhcC-------CCCCCccEEEEecCCCCCCChhHHHHHHHHHc
Q 000991 373 --KLGESVGYKVRLEG--MKGRDTRLMFCTTGILLRRLLVD-------RSLRGVTHVIVDEIHERGMNEDFLLIVLKELL 441 (1197)
Q Consensus 373 --~lg~~VGy~ir~e~--~~~~~t~Ilv~Tpg~LLr~L~~d-------~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll 441 (1197)
.++...|....... ....+++|+|+||+.|.+.+... ..+.++++|||||||+.. ...+...+++.++
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~-~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN-KEAVYNNIMRHYL 188 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc-cCCcHHHHHHHHH
Confidence 22222221100000 01124789999999999988764 346789999999999642 2223333333332
Q ss_pred ccC--------------ccceEEEeccc
Q 000991 442 PRR--------------PELRLILMSAT 455 (1197)
Q Consensus 442 ~~r--------------~~lklIlmSAT 455 (1197)
..+ ++.++|+||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 221 67899999998
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=169.41 Aligned_cols=118 Identities=20% Similarity=0.315 Sum_probs=101.8
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccc
Q 000991 565 EHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMA 644 (1197)
Q Consensus 565 ~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATnia 644 (1197)
...+..++... .+++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++|..+|||||+++
T Consensus 43 ~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~ 114 (191)
T 2p6n_A 43 MVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK-------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 114 (191)
T ss_dssp HHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH-------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHH
T ss_pred HHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCch
Confidence 34455555543 468999999999999999999875 5668899999999999999999999999999999999
Q ss_pred ccccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEecccc
Q 000991 645 ETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRY 708 (1197)
Q Consensus 645 EtGIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~ 708 (1197)
++|+|+|++++||+++.|. |..+|.||+|||||.+ +|.|+.+++..
T Consensus 115 ~~Gldi~~v~~VI~~d~p~------------------~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 115 SKGLDFPAIQHVINYDMPE------------------EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HTTCCCCCCSEEEESSCCS------------------SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred hcCCCcccCCEEEEeCCCC------------------CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999966554 7788999999999995 79999999864
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.47 E-value=7.6e-18 Score=175.04 Aligned_cols=120 Identities=21% Similarity=0.301 Sum_probs=104.3
Q ss_pred HHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeeccccc
Q 000991 567 VLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAET 646 (1197)
Q Consensus 567 ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaEt 646 (1197)
.+..+++....+++||||+++..++.+++.|... ++.+..+||+|+..+|..+++.|++|..+|||||+++++
T Consensus 20 ~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 92 (170)
T 2yjt_D 20 LLVHLLKQPEATRSIVFVRKRERVHELANWLREA-------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92 (170)
Confidence 3455555556789999999999999999999875 567889999999999999999999999999999999999
Q ss_pred ccccCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCC-CCeEEEeccccchh
Q 000991 647 SITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ-PGECYHLYPRYVYD 711 (1197)
Q Consensus 647 GIdIPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~cy~Lys~~~~~ 711 (1197)
|+|+|++++||+++.|. |..+|.||+|||||.+ +|.|+.+++.....
T Consensus 93 Gid~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 93 GIDIPDVSHVFNFDMPR------------------SGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 99999999999966554 5667889999999996 79999998865443
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.56 E-value=8.2e-15 Score=179.44 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEE--eeccc
Q 000991 567 VLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVL--ATNMA 644 (1197)
Q Consensus 567 ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLV--ATnia 644 (1197)
.+..++.. .+|.+|||+|+....+.+++.|... .+ ..++.. .++..+++.|+.|. .|++ +|..+
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~~---------~~-~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~ 440 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSGI---------PV-IEENKK--TRHEEVLELMKTGK-YLVMLVMRAKE 440 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTTS---------CE-EESTTT--CCHHHHHHHHHTSC-CEEEEEC----
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhccC---------ce-EecCCC--CcHHHHHHHHhcCC-eEEEEEecCce
Confidence 44455543 4689999999999999998877542 12 335443 35667777777654 5666 89999
Q ss_pred ccccccCC----EEEEEeCCCCCcccccCCC-------------CCCCccccccCHhhHHhhhcccCCCC--CCeEEEe
Q 000991 645 ETSITIND----VVFVIDCGKAKETSYDALN-------------NTPCLLPSWISKAAARQRRGRAGRVQ--PGECYHL 704 (1197)
Q Consensus 645 EtGIdIPd----V~~VId~G~~k~~~yD~~~-------------~~~~l~~~~iSkas~~QR~GRAGR~~--~G~cy~L 704 (1197)
.+|||+|+ +++||..|+|....-|+.. +...+. .+..-....|-+||+-|.. .|..+.+
T Consensus 441 ~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 441 SEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp -----------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred ecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 99999997 8999999999643322210 000010 0111456779999999985 4665555
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.52 E-value=2.7e-13 Score=167.97 Aligned_cols=120 Identities=20% Similarity=0.151 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccc
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE 376 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~ 376 (1197)
-|...|...++ .+.+|+ |..+.||+|||+++.++++...+ .|..+.|+ .||++||.|.++.+.... ..+|.
T Consensus 79 ~Pt~VQ~~~ip-~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~Vv--TPTreLA~Qdae~m~~l~-~~lGL 149 (997)
T 2ipc_A 79 RHFDVQLIGGA-VLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVV--TVNDYLARRDAEWMGPVY-RGLGL 149 (997)
T ss_dssp CCCHHHHHHHH-HHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEE--ESSHHHHHHHHHHHHHHH-HTTTC
T ss_pred CCcHHHHhhcc-cccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEE--eCCHHHHHHHHHHHHHHH-HhcCC
Confidence 46555555555 455666 88999999999999999965443 23344444 499999999998775543 22333
Q ss_pred eeeeEeee----ccccCCCceEEEEcchHH-HHHHhcCC-------CCC---CccEEEEecCCC
Q 000991 377 SVGYKVRL----EGMKGRDTRLMFCTTGIL-LRRLLVDR-------SLR---GVTHVIVDEIHE 425 (1197)
Q Consensus 377 ~VGy~ir~----e~~~~~~t~Ilv~Tpg~L-Lr~L~~d~-------~L~---~is~VIIDEaHe 425 (1197)
.||.-+.. .......++|+|+|||.| +++|...- .++ ++.++||||+|.
T Consensus 150 sv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 150 SVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp CEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred eEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 44422211 111123589999999999 77776542 466 899999999993
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.51 E-value=2.7e-14 Score=160.18 Aligned_cols=149 Identities=9% Similarity=-0.017 Sum_probs=101.8
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCccc
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLG 375 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg 375 (1197)
.+..+.+|.+.+..+.+++..++++|||+|||.++..++...+. .+ ..++++++|+++|+.|+.+++.+... ..+
T Consensus 111 ~~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~---~~~~lil~Pt~~L~~q~~~~l~~~~~-~~~ 185 (282)
T 1rif_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NY---EGKILIIVPTTALTTQMADDFVDYRL-FSH 185 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-HC---SSEEEEECSSHHHHHHHHHHHHHHTS-CCG
T ss_pred ccCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH-cC---CCeEEEEECCHHHHHHHHHHHHHhcc-ccc
Confidence 35677788888887777788899999999999999776665442 22 23677777999999999999976533 222
Q ss_pred ceeeeEeeeccc---cCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHccc-CccceEEE
Q 000991 376 ESVGYKVRLEGM---KGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPR-RPELRLIL 451 (1197)
Q Consensus 376 ~~VGy~ir~e~~---~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~-r~~lklIl 451 (1197)
..++.-...... .....+|+|+|++.+.+.. ...+.++++|||||||... .+ .++.++.. .+..++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~--~~----~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLAT--GK----SISSIISGLNNCMFKFG 257 (282)
T ss_dssp GGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGCC--HH----HHHHHTTTCTTCCEEEE
T ss_pred ceEEEEeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccCC--cc----cHHHHHHHhhcCCeEEE
Confidence 222211111111 1146899999999876532 1257789999999999632 33 23344443 35789999
Q ss_pred ecccCC
Q 000991 452 MSATLN 457 (1197)
Q Consensus 452 mSATl~ 457 (1197)
||||+.
T Consensus 258 lSATp~ 263 (282)
T 1rif_A 258 LSGSLR 263 (282)
T ss_dssp ECSSCC
T ss_pred EeCCCC
Confidence 999993
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.41 E-value=4.2e-13 Score=146.99 Aligned_cols=139 Identities=18% Similarity=0.091 Sum_probs=97.5
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc-c
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK-L 374 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~-l 374 (1197)
......+|.+++..+.+++.++++||||+|||+++..++... + ..++++.|+++|+.|+.+.+.+ ++.. +
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~--~~~liv~P~~~L~~q~~~~~~~-~~~~~v 161 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------S--TPTLIVVPTLALAEQWKERLGI-FGEEYV 161 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------C--SCEEEEESSHHHHHHHHHHHGG-GCGGGE
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------C--CCEEEEeCCHHHHHHHHHHHHh-CCCCeE
Confidence 356677888888888888889999999999999887766541 2 2455556999999999998876 5443 2
Q ss_pred cceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 375 g~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
+...| ......+|+|+|++.+.+.+.. ....+++|||||+|... .+.+.. ++...+..++|+|||
T Consensus 162 ~~~~g-------~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l~--~~~~~~----i~~~~~~~~~l~LSA 226 (237)
T 2fz4_A 162 GEFSG-------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLP--AESYVQ----IAQMSIAPFRLGLTA 226 (237)
T ss_dssp EEESS-------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCCC--TTTHHH----HHHTCCCSEEEEEEE
T ss_pred EEEeC-------CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccCC--ChHHHH----HHHhccCCEEEEEec
Confidence 22222 1224678999999998765532 23468999999999642 222222 223335678999999
Q ss_pred cCCH
Q 000991 455 TLNA 458 (1197)
Q Consensus 455 Tl~~ 458 (1197)
|+..
T Consensus 227 Tp~r 230 (237)
T 2fz4_A 227 TFER 230 (237)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9843
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.33 E-value=7.5e-11 Score=144.77 Aligned_cols=125 Identities=13% Similarity=0.103 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEee--
Q 000991 564 IEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLAT-- 641 (1197)
Q Consensus 564 i~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVAT-- 641 (1197)
+...+..++.. .+|.+|||+|+....+.+++.+ +..+..-..+++..+....|+ ..+ .-|++||
T Consensus 381 l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~~----------~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~g 446 (551)
T 3crv_A 381 YADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSRI----------SLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGK 446 (551)
T ss_dssp HHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTTC----------CSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESS
T ss_pred HHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHhc----------CCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEec
Confidence 33445555543 4689999999999998888621 222433333556666555554 233 3799998
Q ss_pred cccccccccC-----CEEEEEeCCCCCcccccCCC-----------CCCCc---cccccCHhhHHhhhcccCCCCC--Ce
Q 000991 642 NMAETSITIN-----DVVFVIDCGKAKETSYDALN-----------NTPCL---LPSWISKAAARQRRGRAGRVQP--GE 700 (1197)
Q Consensus 642 niaEtGIdIP-----dV~~VId~G~~k~~~yD~~~-----------~~~~l---~~~~iSkas~~QR~GRAGR~~~--G~ 700 (1197)
....+|||+| ..+.||-.|+|-... |+.. +...+ ...+ --....|-+||+=|... |.
T Consensus 447 g~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~ 524 (551)
T 3crv_A 447 GKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCN 524 (551)
T ss_dssp CCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEE
T ss_pred ceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEE
Confidence 6999999999 478899999997554 4421 11111 1112 34456799999999864 55
Q ss_pred EEEe
Q 000991 701 CYHL 704 (1197)
Q Consensus 701 cy~L 704 (1197)
.+.|
T Consensus 525 v~ll 528 (551)
T 3crv_A 525 VWLL 528 (551)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.12 E-value=5.4e-11 Score=132.85 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=83.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCC-ceE-EEEeecccccccccCCE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG-VRK-IVLATNMAETSITINDV 653 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G-~~k-VLVATniaEtGIdIPdV 653 (1197)
.+.++|||+.....++.+.+.|... .++.+..+||+++..+|..+++.|++| ..+ +|+||+++++|||++++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a 184 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKE------LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 184 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH------HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHh------cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccC
Confidence 4679999999999999999999752 034467899999999999999999988 666 78999999999999999
Q ss_pred EEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCCCC---CeEEEeccccchh
Q 000991 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQP---GECYHLYPRYVYD 711 (1197)
Q Consensus 654 ~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~~~---G~cy~Lys~~~~~ 711 (1197)
++||+ ||++.+...+. ||.||++|.|+ -.+|+|++....+
T Consensus 185 ~~VI~--------~d~~wnp~~~~----------Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 185 NRVIH--------FDRWWNPAVED----------QATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp SEEEE--------CSCCSCTTTC------------------------CCEEEEEEETTSHH
T ss_pred CEEEE--------ECCCCChhHHH----------HHHHhccccCCCCceEEEEEeeCCCHH
Confidence 99999 66666655555 99999999964 4568888876554
No 94
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.03 E-value=4.7e-10 Score=99.74 Aligned_cols=68 Identities=31% Similarity=0.333 Sum_probs=59.4
Q ss_pred CCCCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHc
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFNGLNF-VGQPCGNKKLAEKDAAAEALLWLR 1170 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1197)
|+.|||+.||+++++.+..+|.|.+...++.| |.++|.++|..| .|.-.+|||.||.+||..||.+|.
T Consensus 1 ~~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 1 GSHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp -CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999997666666 999999999876 455438999999999999999985
No 95
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.98 E-value=4.2e-09 Score=130.76 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=74.2
Q ss_pred HHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeec--c
Q 000991 566 HVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN--M 643 (1197)
Q Consensus 566 ~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATn--i 643 (1197)
..+..++... +|.+|||+|+....+.+++.|... ... ..-+++..++..+++.|+ +.--|+++|. .
T Consensus 438 ~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~~-------~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gs 505 (620)
T 4a15_A 438 TVIEDIILKV-KKNTIVYFPSYSLMDRVENRVSFE-------HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGR 505 (620)
T ss_dssp HHHHHHHHHH-CSCEEEEESCHHHHHHHTSSCCSC-------CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSC
T ss_pred HHHHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHhc-------chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCc
Confidence 3444554433 577999999999999988777511 111 444555667888888888 8888999974 9
Q ss_pred cccccccCC--EEEEEeCCCCCcccccCCCC----------CCCc---cccccCHhhHHhhhcccCCCCC--CeEEEe
Q 000991 644 AETSITIND--VVFVIDCGKAKETSYDALNN----------TPCL---LPSWISKAAARQRRGRAGRVQP--GECYHL 704 (1197)
Q Consensus 644 aEtGIdIPd--V~~VId~G~~k~~~yD~~~~----------~~~l---~~~~iSkas~~QR~GRAGR~~~--G~cy~L 704 (1197)
+.+|||+|+ ...||-.|+|-... |+... -..+ ...+ .-....|-+||+=|... |..+.+
T Consensus 506 f~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 506 LSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp C--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred eeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 999999994 67888899995321 11000 0000 0011 23355799999999854 655554
No 96
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.90 E-value=2.5e-09 Score=98.67 Aligned_cols=69 Identities=26% Similarity=0.280 Sum_probs=61.1
Q ss_pred CCCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1102 GGGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1102 ~~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|+.|||+.||+++++.+...|.|.+ ...++.| |.+.|.++|....|. ++|||.||.+||..||.+|..
T Consensus 3 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 3 SGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGT-GPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp CSSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCEEEEEe-eCCHHHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999998 4456555 999999999877787 899999999999999999964
No 97
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.87 E-value=6e-09 Score=96.07 Aligned_cols=69 Identities=29% Similarity=0.409 Sum_probs=60.9
Q ss_pred CCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
++.|||+.||+++++.+..+|.|.+ ...++.| |.++|.++|....| .+++||.||.+||..||..|..+
T Consensus 14 ~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 14 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG-SGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCEEEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999999999998 4456555 99999999996677 68999999999999999999754
No 98
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=98.87 E-value=4.1e-09 Score=96.94 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=61.6
Q ss_pred cCCCCCCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1098 MVSKGGGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1098 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
+|......|||+.||+++++.+...|.|.+ ...++.+ |.++|.++|....| .++|||.||.+||..||..|..
T Consensus 8 ~~~~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 84 (88)
T 3adl_A 8 SGLVPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG-SGTSKKLAKRNAAAKMLLRVHT 84 (88)
T ss_dssp -CCCCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCEEEEE-eeCCHHHHHHHHHHHHHHHHHc
Confidence 344455679999999999999999999998 4456555 99999999985556 5899999999999999999975
No 99
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=98.85 E-value=3.8e-09 Score=94.63 Aligned_cols=67 Identities=28% Similarity=0.319 Sum_probs=59.0
Q ss_pred CCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|||+.||+++++.+...|.|.+ ...++.| |.+.|.++|..+..-.++|||.||.+||..||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999998 4456555 9999999998775556899999999999999999974
No 100
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.82 E-value=9.8e-09 Score=100.69 Aligned_cols=75 Identities=25% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCCCChhHHHHHHHhcCCCCCcceeeec-cCCceEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHcCCCCCCc
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKTKQL-KNNQFRSTVIFNGLNF-VGQPCGNKKLAEKDAAAEALLWLRGDRHSSA 1177 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1177 (1197)
...|||+.||+++++.+..+|.|.+... .+..|.++|.++|..| .|.-+++||.||.+||..||.+|...+.+..
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~~~~~~ 100 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEGRLG 100 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSSSTTT
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEeecCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3459999999999999999999998654 2233999999999887 6776699999999999999999986554433
No 101
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=98.82 E-value=3.9e-09 Score=99.23 Aligned_cols=70 Identities=27% Similarity=0.367 Sum_probs=59.0
Q ss_pred CCCCCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEcCeeeecc-CCCchhhHHHHHHHHHHHHHcCC
Q 000991 1102 GGGDNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFNGLNFVGQ-PCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1102 ~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.|..|||+.||+++++. ...|.|.+...++.| |.+.|.++|..+.|. -++|||.||.+||..||.+|...
T Consensus 3 ~g~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 3 SGSSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCCCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 45679999999999999 889999996666655 999999999433333 36999999999999999999863
No 102
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=98.81 E-value=8.1e-09 Score=97.87 Aligned_cols=72 Identities=29% Similarity=0.299 Sum_probs=58.4
Q ss_pred CCCCCCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEcCeeeeccCC-CchhhHHHHHHHHHHHHHcCC
Q 000991 1101 KGGGDNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFNGLNFVGQPC-GNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1101 ~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.+.+.|||+.||+++++.+...|.|.+...++.| |.++|.++|..|.--.+ +|||.||.+||..||..|...
T Consensus 13 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~ 88 (103)
T 2l2n_A 13 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKS 88 (103)
T ss_dssp ------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcc
Confidence 3456799999999999999999999997666666 99999999988743345 899999999999999999853
No 103
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=98.80 E-value=5.4e-09 Score=93.63 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=57.9
Q ss_pred CCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1104 GDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1104 ~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
+.|||+.||+++++.+.. |.|.+ ...++.| |.++|.++|....|. ++|||.||.+||..||..|..
T Consensus 6 ~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~~~~~G~-G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGE-GNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEEEEEC-CCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECCEEEEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 469999999999999988 99997 4556555 999999999666776 799999999999999999965
No 104
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=98.77 E-value=1.1e-08 Score=90.91 Aligned_cols=65 Identities=28% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1104 GDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1104 ~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
..|||+.||++.+. ...|.|.+ ...++.| |.++|.++|..|.|. ++|||.||.+||..||..|.+
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEEEEE-ESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEEEee-cCCHHHHHHHHHHHHHHHHhc
Confidence 46999999999995 78999998 4456555 999999999999885 899999999999999999975
No 105
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.76 E-value=1.8e-08 Score=91.97 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=58.3
Q ss_pred CCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.+.|||+.||+++++.+ ..|.|.+ ...++.| |.+.|.++|....|. +++||.||.+||..||..|..
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~-G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAEAAINILKA 76 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETTEEEEEC-SSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECCEEEEee-eCCHHHHHHHHHHHHHHHHhc
Confidence 45699999999999998 7999998 4455555 999999999767776 799999999999999999974
No 106
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=98.72 E-value=1.6e-08 Score=93.62 Aligned_cols=68 Identities=32% Similarity=0.386 Sum_probs=55.6
Q ss_pred CCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.+.|||+.||+++++.+ ..|.|.+ ...++.| |+++|.++|..+.|. ++|||.||.+||..||..|.+.
T Consensus 12 ~~kd~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp -CCCHHHHHHHHHHHTT-CCCEEEEEEEC-----CCEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHhcC-CCCEEEEEEeECCCCCCcEEEEEEECCEEEEEE-eCCHHHHHHHHHHHHHHHHHhc
Confidence 35699999999999887 5899998 5566655 999999999988885 8999999999999999999864
No 107
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=98.71 E-value=1.7e-08 Score=88.71 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=55.8
Q ss_pred ChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHc
Q 000991 1107 PKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLR 1170 (1197)
Q Consensus 1107 ~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1197)
|++.||+++++.+...|.|.+ ...++.| |.++|.++|....| .++|||.||.+||..||..|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G-~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETG-SGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999998 4466655 99999999984455 689999999999999999986
No 108
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=98.69 E-value=1.7e-08 Score=89.22 Aligned_cols=64 Identities=30% Similarity=0.363 Sum_probs=56.1
Q ss_pred CCCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1102 GGGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1102 ~~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
+.+.||++.||++ ...|.|.+ ...++.| |.++|.++|..|.|. ++|||.||.+||..||..|.+
T Consensus 1 p~~knp~s~L~E~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~-G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 1 PSGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CCSSCHHHHHHHH-----CCSCEEEEEECCCCTTTCCEEEEEECSSCEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHh-----CCCCEEEEEEeECCCCCceEEEEEEECCEEEEEe-eCCHHHHHHHHHHHHHHHHHh
Confidence 3577999999999 48899997 4456655 999999999999987 899999999999999999875
No 109
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.67 E-value=4e-08 Score=92.23 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=60.4
Q ss_pred CCCCChhHHHHHHHhcCCCCCcceeee-ccC-CceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKTKQ-LKN-NQFRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.+.|||+.||+++++.+...|.|.+.. .++ ..|.+.|.++|..+.--.+++||.||.+||..||.+|...
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 677999999999999999999999854 332 4599999999987754458999999999999999999864
No 110
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=98.57 E-value=5.9e-08 Score=88.67 Aligned_cols=67 Identities=25% Similarity=0.269 Sum_probs=56.5
Q ss_pred CChhHHHHHHHh-----cCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1106 NPKTDLQTVLAR-----AGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1106 ~~~~~l~~~~~~-----~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
|||+.||+++++ .+...|.|.+ ...++.+ |.+.|.++|..+.---++|||.||.+||..||..|...
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 899999999998 4678999998 4455554 99999999977644467999999999999999988764
No 111
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.57 E-value=1.4e-07 Score=88.45 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=58.8
Q ss_pred CCCCCChhHHHHHHHhcCCCCCcceee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1102 GGGDNPKTDLQTVLARAGHGAPAYKTK-QLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1102 ~~~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
....|||+.||+++++. ..|.|.+. ..++.| |.++|.++|..|.|. ++|||.||.+||..||..|..
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEAS-GPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEEEEe-eCCHHHHHHHHHHHHHHHhCC
Confidence 35579999999999995 79999984 456666 999999999999885 799999999999999999965
No 112
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=98.52 E-value=1.7e-07 Score=86.41 Aligned_cols=65 Identities=26% Similarity=0.277 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.++|+.||++.++.+ .|.|.+ ...++.+ |+++|.++|..|.|. ++|||.||.+||..||..|...
T Consensus 14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~~G~-G~SKK~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAALEKLFPD 82 (91)
T ss_dssp SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEEEee-eCCHHHHHHHHHHHHHHHHhhc
Confidence 489999999999988 999997 4456555 999999999999885 8999999999999999999754
No 113
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=98.50 E-value=1.4e-07 Score=90.70 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=56.8
Q ss_pred CCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEc-----CeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFN-----GLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|||+.||+++++.+. .|.|.+...++.| |.+.|.++ |..+.--.++|||.||.+||..||..|..
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999 9999987777766 99999994 65443346799999999999999999975
No 114
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.49 E-value=2.2e-07 Score=86.93 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=58.5
Q ss_pred CCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
...|||+.||+++++.+.. |.|.. ...++.| |.+.|.++|..+.---+++||.||.+||..||..|...
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhh
Confidence 3469999999999999986 89996 4556655 99999999987743347999999999999999999864
No 115
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.48 E-value=2e-07 Score=85.77 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=56.9
Q ss_pred CCCCChhHHHHHHHhcCCCCCcceeeeccCC----ceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKTKQLKNN----QFRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
+..|||+.||+++++.+..+ .|. ...++. .|.+.|.++|..+.---++|||.||.+||..||..|...
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 4 GSSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhc
Confidence 44699999999999999865 999 555543 399999999988743357999999999999999999864
No 116
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=98.31 E-value=6.8e-07 Score=85.76 Aligned_cols=67 Identities=27% Similarity=0.237 Sum_probs=56.3
Q ss_pred CCCCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCCC
Q 000991 1101 KGGGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGDR 1173 (1197)
Q Consensus 1101 ~~~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1173 (1197)
-+.+.|||+.||++.+. |.|.+ ...++.+ |.++|.++|..|.|. ++|||.||.+||..||..|.+..
T Consensus 33 ~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~~G~-G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 33 IPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHCCCT
T ss_pred CCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEEEee-eCCHHHHHHHHHHHHHHHHHcCC
Confidence 34567999999999763 99998 4455555 999999999999776 69999999999999999998743
No 117
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=98.24 E-value=1.8e-06 Score=76.91 Aligned_cols=63 Identities=27% Similarity=0.265 Sum_probs=50.9
Q ss_pred ChhHHHHHHHhcCCCCCcceee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1107 PKTDLQTVLARAGHGAPAYKTK-QLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1107 ~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.||.||+|.+.. ..|.|... ..++.| |.++|.++|..|.|. ++|||.||.+||..||..|...
T Consensus 6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEEEEE-ECCHHHHHHHHHHHHHHHHHcc
Confidence 445555555553 69999984 456655 999999999999986 8999999999999999999753
No 118
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=98.14 E-value=2.5e-06 Score=89.12 Aligned_cols=68 Identities=25% Similarity=0.247 Sum_probs=58.8
Q ss_pred CCCCChhHHHHHHHhcCCCCCcceee-eccCCc---eEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKTK-QLKNNQ---FRSTVIFNGLNF-VGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
+..|||+.||+++++.+.. |.|.+. ..++.| |.+.|.++|..+ .|. ++|||.||.+||..||..|...
T Consensus 11 ~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGE-GRSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEE-CCSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecC-CCCHHHHHHHHHHHHHHHHhcc
Confidence 4469999999999999987 999974 556555 999999999877 665 7999999999999999999864
No 119
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=98.13 E-value=1e-06 Score=81.33 Aligned_cols=65 Identities=22% Similarity=0.050 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEcCe-ee-eccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFNGL-NF-VGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|+|+.||++++..+ ..|.|.....++.+ |...|.++|. .. .|. ++|||.||.+||..||..|.-
T Consensus 6 ~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 6 MNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp HHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEE-ESSHHHHHHHHHHHHHHCHHH
T ss_pred CCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999874 68999986556555 9999999996 33 444 799999999999999987754
No 120
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=98.08 E-value=2.8e-06 Score=88.76 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=61.3
Q ss_pred CCCCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGDR 1173 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1173 (1197)
...||++.||++.++.+.++ .|.+...++.+ |.++|.++|..|....++|||.|+++||..||..|.+..
T Consensus 102 ~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~~ 174 (179)
T 1qu6_A 102 SMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE 174 (179)
T ss_dssp CCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhccc
Confidence 35699999999999999986 99987766644 999999999987666799999999999999999998644
No 121
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=98.05 E-value=2.6e-06 Score=81.39 Aligned_cols=66 Identities=21% Similarity=0.050 Sum_probs=55.1
Q ss_pred CCCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEcCe-ee-eccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1104 GDNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFNGL-NF-VGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1104 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
..|+|..||++++..+ ..|.|.....++.+ |...|.++|. .. .|. ++|||.||.+||..||..+.-
T Consensus 7 ~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~~ 77 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKKM 77 (117)
T ss_dssp CTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEE-ESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHHH
Confidence 3599999999999944 78999986556665 9999999997 33 444 799999999999999998765
No 122
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=97.97 E-value=1e-05 Score=87.85 Aligned_cols=69 Identities=26% Similarity=0.369 Sum_probs=60.0
Q ss_pred CCCCChhHHHHHHHhcCCCCCcceeee-ccC-CceEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKTKQ-LKN-NQFRSTVIFNGLNF-VGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.+.|||+.||+++++.|...|.|.... .++ ..|.++|.++|..| .|. ++|||.||.+||..||..|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 566999999999999999999999843 333 45999999999987 666 7999999999999999999873
No 123
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.94 E-value=2.2e-05 Score=97.32 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccce--ee
Q 000991 302 ERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES--VG 379 (1197)
Q Consensus 302 ~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~--VG 379 (1197)
.|.+.+..+..+++++|+|++||||||.+... +..+.....+...+|+++.||..+|.++.+.+..... .++.. ..
T Consensus 153 ~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~l-l~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~-~l~l~~~~~ 230 (608)
T 1w36_D 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKL-LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR-QLPLTDEQK 230 (608)
T ss_dssp HHHHHHHHHHTBSEEEEECCTTSTHHHHHHHH-HHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHH-HSSCCSCCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHH-HHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHh-cCCCCHHHH
Confidence 34555556668899999999999999765433 3222221123345788888999999998877643211 11100 00
Q ss_pred eEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 380 YKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 380 y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
..+..+... -.+++-.+++... ..........+++|||||++. ++.+.+..+++.+ .++.|+|++.-.
T Consensus 231 ~~~~~~~~T--ih~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAsm--l~~~~~~~Ll~~l---~~~~~liLvGD~ 298 (608)
T 1w36_D 231 KRIPEDAST--LHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEASM--IDLPMMSRLIDAL---PDHARVIFLGDR 298 (608)
T ss_dssp CSCSCCCBT--TTSCC------------CTTSCCSCSEEEECSGGG--CBHHHHHHHHHTC---CTTCEEEEEECT
T ss_pred hccchhhhh--hHhhhccCCCchH-HHhccCCCCCCCEEEEechhh--CCHHHHHHHHHhC---CCCCEEEEEcch
Confidence 000000000 0112222333210 001111223789999999994 5555544554432 356778877544
No 124
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=97.91 E-value=9.3e-06 Score=87.68 Aligned_cols=66 Identities=24% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|||+.||+++++.+...|.|.+ ...++.+ |.++|.++|....| -++|||.||.+||..||..|..
T Consensus 150 ~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~~~~G-~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 150 KDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG-EGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCEEEEE-ecCCHHHHHHHHHHHHHHHhhc
Confidence 49999999999999999999997 4455544 99999999995555 6899999999999999999974
No 125
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=97.87 E-value=1.1e-05 Score=88.84 Aligned_cols=68 Identities=31% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCChhHHHHHHHhcCCCCCcceee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTK-QLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.|||+.||+++++.+...|.|.+. ..++.+ |.+.|.++|..+.---++|||.||.+||..||..|..+
T Consensus 179 ~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 179 FDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp SCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 499999999999999999999984 355443 99999999976533347899999999999999999754
No 126
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=87.36 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=53.0
Q ss_pred CCCCChhHHHHHHHhcCCCCCcce---eeeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYK---TKQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
+..|||+.||+ +++.+..+|.|. +...++.| |.++|. +..+.|. ++|||.||.+||..||..|...
T Consensus 128 ~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~~~~~G~-G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 128 GLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--KHTVRGW-CKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp TCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--TEEEEEE-ESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--EEEEEEE-eCCHHHHHHHHHHHHHHHHHhh
Confidence 45699999999 888899999998 55566666 988887 8888885 7899999999999999999854
No 127
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=97.78 E-value=2.5e-05 Score=85.01 Aligned_cols=64 Identities=30% Similarity=0.351 Sum_probs=55.9
Q ss_pred CCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
.+.|||+.||++ ...|.|.+ ...++.+ |.++|.++|..|.| -++|||.||++||..||..|.+.
T Consensus 159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G-~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFFEG-SGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEEEe-eeCCHHHHHHHHHHHHHHHHccc
Confidence 567999999999 57899996 4455555 99999999999998 58999999999999999999864
No 128
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=97.68 E-value=5.8e-06 Score=90.54 Aligned_cols=69 Identities=30% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHhcCCCCCcceeeeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCCC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTKQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGDR 1173 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1173 (1197)
.|||+.||+++++.+...|.|.+...++.+ |.++|.++|..+.--.++|||.||.+||..||..|...+
T Consensus 162 ~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 162 LDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 499999999999999999999987656554 999999999754333489999999999999999998643
No 129
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=97.59 E-value=9.2e-05 Score=80.57 Aligned_cols=67 Identities=28% Similarity=0.196 Sum_probs=57.6
Q ss_pred CCCCChhHHHHHHHhcCCCCCccee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCC
Q 000991 1103 GGDNPKTDLQTVLARAGHGAPAYKT-KQLKNNQ---FRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGD 1172 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1197)
|..|+|+.||.+... ...|.|.+ ...++.| |.+.|.++|..+.|. +++||.||.+||..||..|...
T Consensus 2 ~~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 2 GPVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEEEEE-ESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEEEEe-cCChHHHHHHHHHHHHHHHHhc
Confidence 567999999999865 46899998 4456555 999999999999885 6999999999999999999863
No 130
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=97.56 E-value=1.1e-05 Score=88.72 Aligned_cols=66 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHhcCCCCCcceee-eccCCc---eEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1105 DNPKTDLQTVLARAGHGAPAYKTK-QLKNNQ---FRSTVIFNGLNF-VGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
.|||+.||+++++.+...|.|.+. ..++.+ |++.|.++|..+ .| -++|||.||.+||+.|+..|++
T Consensus 177 ~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 177 KDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARA-IAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHc
Confidence 499999999999999999999984 444433 999999999654 55 4899999999999999998875
No 131
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.42 E-value=0.00027 Score=86.84 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
......|.+++..+..+++++|.|+.|+||||.+-. ++..+.. . ...|+++.||..+|..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~~--~--g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAES--L--GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHHH--T--TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHHh--c--CCeEEEecCcHHHHHHhHhhh
Confidence 445677888888888899999999999999987654 4443332 2 245777789999887776544
No 132
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.39 E-value=0.00018 Score=89.78 Aligned_cols=63 Identities=29% Similarity=0.567 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 301 KERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 301 ~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
.|++++..++......+|.||+|+|||+.+...|...+ .. ..+|++++||..+|.++.+++..
T Consensus 193 ~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~~----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 193 SQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-KQ----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-HT----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-hC----CCeEEEEcCchHHHHHHHHHHHh
Confidence 45556666666677999999999999988877666544 22 24689999999999999999864
No 133
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.31 E-value=0.00058 Score=81.64 Aligned_cols=128 Identities=19% Similarity=0.288 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHH----c-CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 300 YKERDALLKAIS----E-NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 300 ~~~q~~Il~~I~----~-~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
...|++++..+. + ...++|.|+.|||||+.+- .++..+...+. ..|+++.||..+|..+.+++ +...
T Consensus 27 n~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~----~~~~ 98 (459)
T 3upu_A 27 TEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGE---TGIILAAPTHAAKKILSKLS----GKEA 98 (459)
T ss_dssp CHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTC---CCEEEEESSHHHHHHHHHHH----SSCE
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCC---ceEEEecCcHHHHHHHHhhh----ccch
Confidence 344555555442 2 3499999999999997664 44444443221 35777789999888777665 2211
Q ss_pred cc---eeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEE
Q 000991 375 GE---SVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLIL 451 (1197)
Q Consensus 375 g~---~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIl 451 (1197)
+. ..+...... .... .|.. ...+.+..+++|||||+|. ++.+.+..+++ .+. ...++++
T Consensus 99 ~T~h~~~~~~~~~~----~~~~-~~~~--------~~~~~~~~~~~iiiDE~~~--~~~~~~~~l~~-~~~--~~~~~~~ 160 (459)
T 3upu_A 99 STIHSILKINPVTY----EENV-LFEQ--------KEVPDLAKCRVLICDEVSM--YDRKLFKILLS-TIP--PWCTIIG 160 (459)
T ss_dssp EEHHHHHTEEEEEC----SSCE-EEEE--------CSCCCCSSCSEEEESCGGG--CCHHHHHHHHH-HSC--TTCEEEE
T ss_pred hhHHHHhccCcccc----cccc-hhcc--------cccccccCCCEEEEECchh--CCHHHHHHHHH-hcc--CCCEEEE
Confidence 11 011111100 0111 1111 1123567899999999995 44444444443 333 3445555
Q ss_pred ec
Q 000991 452 MS 453 (1197)
Q Consensus 452 mS 453 (1197)
+.
T Consensus 161 vG 162 (459)
T 3upu_A 161 IG 162 (459)
T ss_dssp EE
T ss_pred EC
Confidence 44
No 134
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.03 E-value=0.0011 Score=82.21 Aligned_cols=66 Identities=14% Similarity=0.275 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
....|.+++..+..+..++|.||+|+|||+.+...+. .+.. ....+|+++.|+..+|.++.+++..
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~-~l~~---~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY-HLAR---QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHH-HHHT---SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHH-HHHH---cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 3556677777766788999999999999987765443 3321 1335788888999999999998854
No 135
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=96.90 E-value=0.00014 Score=83.02 Aligned_cols=75 Identities=24% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHhcCCCC-CcceeeeccCCceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHcCCCCCCccch
Q 000991 1105 DNPKTDLQTVLARAGHGA-PAYKTKQLKNNQFRSTVIFNGLNFVGQPCGNKKLAEKDAAAEALLWLRGDRHSSARDL 1180 (1197)
Q Consensus 1105 ~~~~~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1180 (1197)
.|||..||+++++.|... |.|..... .|.|...|.++|..+.--.++|||.||.+||+.||..|+..++-+..+|
T Consensus 254 ~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~-~GpF~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~k~~~~~i 329 (341)
T 3rv0_A 254 KNAKNELAELLQINKLGHKLHYRKLTE-MPPFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLRKYSVYDL 329 (341)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHHHcCCCCCceEEEEec-cCCEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 499999999999988665 69987542 3459999999997665456889999999999999999998665544443
No 136
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.78 E-value=0.0049 Score=66.37 Aligned_cols=114 Identities=13% Similarity=0.154 Sum_probs=62.6
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC-cccceeeeEeeeccccC
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE-KLGESVGYKVRLEGMKG 389 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~-~lg~~VGy~ir~e~~~~ 389 (1197)
..+..++++|++|+||||.+.+.+.... ..+. ++++++|...- + ++ .+....|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~--kVli~~~~~d~------r-----~~~~i~srlG~~-------- 65 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE---YADV--KYLVFKPKIDT------R-----SIRNIQSRTGTS-------- 65 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTC--CEEEEEECCCG------G-----GCSSCCCCCCCS--------
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH---hcCC--EEEEEEeccCc------h-----HHHHHHHhcCCC--------
Confidence 3578899999999999999988876643 2233 45555554310 0 00 111111210
Q ss_pred CCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 390 RDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 390 ~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
-..+.+.+..-++..+.....-..+++|||||++- +..+ ....++.+... ++.+|+..-
T Consensus 66 -~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 66 -LPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp -SCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred -ccccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 01223445556666665443335689999999995 4444 33344444332 555555443
No 137
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.64 E-value=0.019 Score=66.81 Aligned_cols=155 Identities=10% Similarity=0.080 Sum_probs=90.6
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc--
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK-- 373 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~-- 373 (1197)
.+....+|..++..+...+.+++..+-+.|||+.+...++..+.. .+...|++++|++..|..+.+++.......
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ 237 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHHhChH
Confidence 366788999999988777889999999999998877776654432 244579999999999988877765543211
Q ss_pred -cccee----eeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 374 -LGESV----GYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 374 -lg~~V----Gy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
+...+ ...+.+ ..+..|.+.+.. -+.+. =.+++++|+||+|...-..+.+.. ++..+..+++.+
T Consensus 238 ll~~~~~~~~~~~I~f----~nGs~i~~lsa~--~~slr----G~~~~~viiDE~a~~~~~~el~~a-l~~~ls~~~~~k 306 (385)
T 2o0j_A 238 FLQPGIVEWNKGSIEL----DNGSSIGAYASS--PDAVR----GNSFAMIYIEDCAFIPNFHDSWLA-IQPVISSGRRSK 306 (385)
T ss_dssp TTSCCEEEECSSEEEE----TTSCEEEEEECS--HHHHH----TSCCSEEEEESGGGSTTHHHHHHH-HHHHHHSTTCCE
T ss_pred hhhhhhccCCccEEEe----CCCCEEEEEECC--CCCcc----CCCCCEEEechhhhcCCCHHHHHH-HHHHhhcCCCCc
Confidence 11111 111222 123455544421 11111 124578999999963211344443 444444434445
Q ss_pred EEE-ecccCCHHHHHhhh
Q 000991 449 LIL-MSATLNAELFSSYF 465 (1197)
Q Consensus 449 lIl-mSATl~~~~f~~yf 465 (1197)
+++ -|++.. ..|.+.+
T Consensus 307 iiiiSTP~g~-n~fy~l~ 323 (385)
T 2o0j_A 307 IIITTTPNGL-NHFYDIW 323 (385)
T ss_dssp EEEEECCCSS-SHHHHHH
T ss_pred EEEEeCCCCc-hhHHHHH
Confidence 444 444444 3554444
No 138
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.62 E-value=0.0042 Score=77.13 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
+...|.+++. ..+..++|.|+.|||||+.+..-+...+ ..+.....+|+++.+|+.+|.++.+|+....+..
T Consensus 10 Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~-~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 10 LNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLM-SVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp CCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHH-HTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHH-HhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 3455666665 3467889999999999988776665543 2222234568888899999999999998887643
No 139
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.53 E-value=0.032 Score=68.73 Aligned_cols=155 Identities=10% Similarity=0.069 Sum_probs=90.7
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc-
Q 000991 296 SLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL- 374 (1197)
Q Consensus 296 ~LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l- 374 (1197)
.+....+|..++..+...+.+++.++-|+|||+.+...++-.+.. .+...|+++.|++..|..+.+.+........
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT---SSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh---CCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 356788999999988677889999999999999887766655542 2345899999999999998887766553321
Q ss_pred --cceee----eEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccce
Q 000991 375 --GESVG----YKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELR 448 (1197)
Q Consensus 375 --g~~VG----y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lk 448 (1197)
..... ..+.+ ..+..|.+.+.+ -..+... +.+++|+||+|+-.-..+++.. +...+...++.+
T Consensus 238 ~~~~~~~~~~~~~i~~----~nGs~i~~~s~~--~~~lrG~----~~~~~iiDE~~~~~~~~~l~~~-~~~~l~~~~~~~ 306 (592)
T 3cpe_A 238 FLQPGIVEWNKGSIEL----DNGSSIGAYASS--PDAVRGN----SFAMIYIEDCAFIPNFHDSWLA-IQPVISSGRRSK 306 (592)
T ss_dssp TTSCCEEEECSSEEEE----TTSCEEEEEECC--HHHHHHS----CCSEEEEETGGGCTTHHHHHHH-HHHHHSSSSCCE
T ss_pred hhccccccCCccEEEe----cCCCEEEEEeCC--CCCccCC----CcceEEEehhccCCchhHHHHH-HHHHhccCCCce
Confidence 11100 11111 123455544322 1111111 3679999999973221234433 333343334445
Q ss_pred EEEe-cccCCHHHHHhhh
Q 000991 449 LILM-SATLNAELFSSYF 465 (1197)
Q Consensus 449 lIlm-SATl~~~~f~~yf 465 (1197)
++++ |++.. ..|.+.+
T Consensus 307 ii~isTP~~~-~~~y~~~ 323 (592)
T 3cpe_A 307 IIITTTPNGL-NHFYDIW 323 (592)
T ss_dssp EEEEECCCTT-SHHHHHH
T ss_pred EEEEeCCCCc-hhHHHHH
Confidence 4443 33333 3444433
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.39 E-value=0.0079 Score=61.83 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.6
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.++.+++.||+||||||.+-..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5789999999999999776543
No 141
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.31 E-value=0.0078 Score=62.70 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=28.1
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPR 355 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPr 355 (1197)
.++..+++|+.||||||.+.+.+..... .+ .++++++|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~---~g--~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL---GK--KKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH---TT--CEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH---CC--CeEEEEeec
Confidence 4678999999999999998877665432 22 245565676
No 142
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.019 Score=65.10 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCC
Q 000991 413 RGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1197)
Q Consensus 413 ~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~ 457 (1197)
....+||+||+|... ..+++..+++........+-+|+.++|++
T Consensus 131 ~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 345789999999765 77788777764333334566788899984
No 143
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.17 E-value=0.013 Score=69.05 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=69.4
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
..+++++|++|+||||.+....... . ..+..+.++..-+.|..+......++...+..+. .... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l--~-~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~----------~~~~-~~ 162 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY--K-KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY----------GEPN-NQ 162 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH--H-HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEE----------CCTT-CS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--H-HcCCeEEEEecCccchhHHHHHHHHHHhcCCcee----------eccc-cC
Confidence 4688999999999999887655432 2 3456666666667777766555555443332210 0000 00
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCC--CChhHHHHHHHHHcccCccceEEEecccC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERG--MNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~--~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
.|..+...........++++||||++-... .+..++..+.+......|+.-+++++|+.
T Consensus 163 -----dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 163 -----NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp -----CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 122222222212123578999999997433 34444333332222234666778888886
No 144
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.08 E-value=0.011 Score=62.01 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=28.4
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPR 355 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPr 355 (1197)
.++..+++|+.||||||.+...+.... .++ .++++++|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~---~~g--~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK---IAK--QKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH---HTT--CCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH---HCC--CEEEEEEec
Confidence 467899999999999998887766543 222 356666676
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.61 E-value=0.031 Score=58.84 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=21.5
Q ss_pred HHHHHHHHcCC---eEEEEecCCChHHHHHHHH
Q 000991 304 DALLKAISENQ---VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 304 ~~Il~~I~~~~---vvII~apTGSGKTtq~pq~ 333 (1197)
+.+...+..++ .++|.||+|+|||+.+-.+
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 44445555554 7999999999999766543
No 146
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.57 E-value=0.02 Score=67.45 Aligned_cols=109 Identities=20% Similarity=0.164 Sum_probs=65.1
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCC
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGR 390 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~ 390 (1197)
...++.+|.|+.|||||+.+...+. . ..++++.||++++..+.+++... +. ..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~--------~--~~~lVlTpT~~aa~~l~~kl~~~-----~~------------~~ 211 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN--------F--EEDLILVPGRQAAEMIRRRANAS-----GI------------IV 211 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC--------T--TTCEEEESCHHHHHHHHHHHTTT-----SC------------CC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc--------c--CCeEEEeCCHHHHHHHHHHhhhc-----Cc------------cc
Confidence 3567889999999999986644321 1 13455669999998888777221 10 01
Q ss_pred CceEEEEcchHHHHHHhcCCC--CCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 391 DTRLMFCTTGILLRRLLVDRS--LRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 391 ~t~Ilv~Tpg~LLr~L~~d~~--L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
....-+.|-+.++ .+... ....++|||||+-. ++...+..++..+ +..++|+.--+
T Consensus 212 ~~~~~V~T~dsfL---~~~~~~~~~~~d~liiDE~sm--~~~~~l~~l~~~~----~~~~vilvGD~ 269 (446)
T 3vkw_A 212 ATKDNVRTVDSFL---MNYGKGARCQFKRLFIDEGLM--LHTGCVNFLVEMS----LCDIAYVYGDT 269 (446)
T ss_dssp CCTTTEEEHHHHH---HTTTSSCCCCCSEEEEETGGG--SCHHHHHHHHHHT----TCSEEEEEECT
T ss_pred cccceEEEeHHhh---cCCCCCCCCcCCEEEEeCccc--CCHHHHHHHHHhC----CCCEEEEecCc
Confidence 1223466765543 22222 23489999999984 5555555555432 22456665444
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.52 E-value=0.04 Score=57.28 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=20.4
Q ss_pred HHHHHHHHcC--CeEEEEecCCChHHHHHHHH
Q 000991 304 DALLKAISEN--QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 304 ~~Il~~I~~~--~vvII~apTGSGKTtq~pq~ 333 (1197)
+.+...+..+ ..+++.||+|+|||+.+-.+
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHH
Confidence 3444444443 35999999999999766433
No 148
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.44 E-value=0.075 Score=59.57 Aligned_cols=128 Identities=24% Similarity=0.254 Sum_probs=67.6
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
.+++++++|++|+||||.+...... +....|....++-.-|.|..+.+.....+...|..+. .. .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~----------~- 168 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VC----------Y- 168 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BC----------S-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ec----------C-
Confidence 5789999999999999988655433 2222344555555445555554333323222221110 00 0
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccCCHHHHHhh
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATLNAELFSSY 464 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl~~~~f~~y 464 (1197)
.++.+...+. .+.++++||||.+- +......++.-+..++. ..++-.+++++||.+...+.++
T Consensus 169 ------~~~~l~~al~---~~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~ 232 (296)
T 2px0_A 169 ------TKEEFQQAKE---LFSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI 232 (296)
T ss_dssp ------SHHHHHHHHH---HGGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH
T ss_pred ------CHHHHHHHHH---HhcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH
Confidence 1233333222 13678999999665 33333333333444443 3355557888788765555443
No 149
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.42 E-value=0.05 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=18.4
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+.+++.||+|+|||+.+- .+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 789999999999997654 444433
No 150
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=95.42 E-value=0.014 Score=64.37 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=45.1
Q ss_pred CChhHHHHHHHhcCCCCCccee-eeccCCceEEEEEEcCee-eeccCCCchhhHHHHHHHHHHHHHc
Q 000991 1106 NPKTDLQTVLARAGHGAPAYKT-KQLKNNQFRSTVIFNGLN-FVGQPCGNKKLAEKDAAAEALLWLR 1170 (1197)
Q Consensus 1106 ~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1197)
+||+.||++++..+. .|.|.. .......|+.+|.++|.. ..|. ++|||.||.+||+.||..|+
T Consensus 198 ~~k~~l~el~~~~~~-~~~~~~~~~~~~~~f~v~v~v~~~~~~~G~-G~SkK~Aeq~AA~~AL~~l~ 262 (265)
T 3c4b_A 198 VPRSPVRELLEMEPE-TAKFSPAERTYDGKVRVTVEVVGKGKFKGV-GRSYRIAKSAAARRALRSLK 262 (265)
T ss_dssp SCCCHHHHHHHHCTT-TEEECCCEECTTSCEEEEEEETTTEEEEEE-ESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccC-CceeeeccccCCCcEEEEEEEecceEEEEe-eCCHHHHHHHHHHHHHHHHh
Confidence 567778888776542 223322 123445699999999964 4444 78999999999999999886
No 151
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.39 E-value=0.029 Score=66.26 Aligned_cols=124 Identities=18% Similarity=0.253 Sum_probs=69.1
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
..+++++|++|+||||.+...... + . .+|..+.++..-|.|..|.......+...+..+ | ... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~-l-~-~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~---~~~-~~--- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY-F-Q-KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----F---GNP-QE--- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH-H-H-TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----E---CCT-TC---
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH-H-H-HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----E---ecC-CC---
Confidence 468899999999999988765533 2 2 356666677777888877665555544333221 0 000 00
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATL 456 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl 456 (1197)
..|.-++........-.++++||||.+= |....+-+...++.+.. ..|+.-++.++||.
T Consensus 165 ----~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 ----KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 1122222111111112358999999996 32233334443444322 34677788889986
No 152
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.13 E-value=0.032 Score=55.31 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.1
Q ss_pred HHcCCeEEEEecCCChHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~p 331 (1197)
...+..++|.||+|+|||+.+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3567889999999999996553
No 153
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.07 E-value=0.019 Score=61.22 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=28.1
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR 356 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR 356 (1197)
..+...+|+|+-||||||.+...+.... . .+ .++++++|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~--~g--~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-Y--AK--QKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-H--TT--CCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-H--cC--CceEEEEecc
Confidence 4578999999999999998887764432 2 22 3456666754
No 154
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.028 Score=71.56 Aligned_cols=66 Identities=11% Similarity=0.244 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
+...|.+++..+..+..++|.||+|+|||+.+...+.. +... ...+|+++.|+..+|.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~-l~~~---~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYH-LSKI---HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHH-HHHH---HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH-HHhC---CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 34667777777777889999999999999877655543 3321 124688888999999999999965
No 155
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.92 E-value=0.036 Score=58.84 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.1
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.++.++|.||+|+|||+.+-.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4688999999999999766543
No 156
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.89 E-value=0.086 Score=59.96 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEeccc
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT 455 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSAT 455 (1197)
+.+.+...+...+..+|||||+|. +..+....+++.+-.-.++..+|+.+-.
T Consensus 96 l~~~~~~~~~~~~~kvviIdead~--l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 96 VTEKLNEHARLGGAKVVWVTDAAL--LTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp HHHHTTSCCTTSSCEEEEESCGGG--BCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred HHHHHhhccccCCcEEEEECchhh--cCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 334444445567789999999996 4455555566655443334555655443
No 157
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.75 E-value=0.061 Score=61.49 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=18.3
Q ss_pred cCCeEEEEecCCChHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~I 334 (1197)
....++|+||+|+|||+.+-.+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 46789999999999997665433
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.75 E-value=0.064 Score=61.49 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCCChhhHHHHHHHHHHhcccccCCc---cccccc-cccccCCchh
Q 000991 750 QPPEPLSVKNAIEYLQIIGALDENEN---LTVLGR-NLSMLPVEPK 791 (1197)
Q Consensus 750 dpP~~~~v~~Al~~L~~lGaLd~~~~---lT~LG~-~ls~lPvdp~ 791 (1197)
.|.+...+..+++.|...|.|..... -...|+ .+-+|.+++.
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~ 373 (389)
T 1fnn_A 328 RPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPL 373 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHH
Confidence 45566778889999999998875321 112343 2445555554
No 159
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.66 E-value=0.063 Score=57.76 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=30.3
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR 356 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR 356 (1197)
.++..+++|+-||||||.+...+.... +.+.++++.+|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-----~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-----IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-----TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-----HCCCeEEEEeecC
Confidence 578999999999999999988877643 2334567767764
No 160
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.64 E-value=0.033 Score=68.77 Aligned_cols=109 Identities=27% Similarity=0.365 Sum_probs=71.5
Q ss_pred HHHHHHHHHHc--CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceee
Q 000991 302 ERDALLKAISE--NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVG 379 (1197)
Q Consensus 302 ~q~~Il~~I~~--~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VG 379 (1197)
.|.++++.+.. ..+.+|+|+-|.|||+.+-+.+... . ..++||+|+...+..+.+.. +.
T Consensus 179 dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-----~---~~~~vtAP~~~a~~~l~~~~----~~------- 239 (671)
T 2zpa_A 179 EQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-----A---GRAIVTAPAKASTDVLAQFA----GE------- 239 (671)
T ss_dssp HHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-----S---SCEEEECSSCCSCHHHHHHH----GG-------
T ss_pred HHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-----H---hCcEEECCCHHHHHHHHHHh----hC-------
Confidence 45555666654 5678999999999997777666432 1 13588999998877655433 11
Q ss_pred eEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccCC
Q 000991 380 YKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN 457 (1197)
Q Consensus 380 y~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl~ 457 (1197)
.|-|+.|.-++. .+...++||||||=. +...++..+ +...+ .|+||-|++
T Consensus 240 -------------~i~~~~Pd~~~~------~~~~~dlliVDEAAa--Ip~pll~~l----l~~~~---~v~~~tTv~ 289 (671)
T 2zpa_A 240 -------------KFRFIAPDALLA------SDEQADWLVVDEAAA--IPAPLLHQL----VSRFP---RTLLTTTVQ 289 (671)
T ss_dssp -------------GCCBCCHHHHHH------SCCCCSEEEEETGGG--SCHHHHHHH----HTTSS---EEEEEEEBS
T ss_pred -------------CeEEeCchhhhh------CcccCCEEEEEchhc--CCHHHHHHH----HhhCC---eEEEEecCC
Confidence 144556655442 344689999999975 555544444 44333 689999985
No 161
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.64 E-value=0.042 Score=51.11 Aligned_cols=79 Identities=23% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCCCChhHHHHHHHhcC-CCCCcce---eeeccCCceEEEEEEc---CeeeeccCCCchhhHHHHHHHHHHHHHcC--CC
Q 000991 1103 GGDNPKTDLQTVLARAG-HGAPAYK---TKQLKNNQFRSTVIFN---GLNFVGQPCGNKKLAEKDAAAEALLWLRG--DR 1173 (1197)
Q Consensus 1103 ~~~~~~~~l~~~~~~~~-~~~p~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 1173 (1197)
--..|||+|-++++|+- ..-..-. -...+...=.+|+.++ -|.|+|. ++.|-.||.+||+.|.+||++ .-
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k~K~~tl~l~WP~~mef~a~-G~rK~eAE~kAAA~AC~kLK~Lgll 93 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGY-GSKKIDAERQAAAAACQLFKGWGLL 93 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSSSEEEEEEECSSSCEEEEEE-ESSHHHHHHHHHHHHHHHHHHHTSS
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEeecCCceeEEEEEecCCCcEEEEee-ccchHHHHHHHHHHHHHHHHHcCcc
Confidence 34489999999999953 2211110 0112333347888775 6889986 678999999999999999996 33
Q ss_pred CCCccchhH
Q 000991 1174 HSSARDLDH 1182 (1197)
Q Consensus 1174 ~~~~~~~~~ 1182 (1197)
...++.++|
T Consensus 94 ~p~n~pl~h 102 (119)
T 2db2_A 94 GPRNELFDA 102 (119)
T ss_dssp CTTCCCCCH
T ss_pred CCCCCcchH
Confidence 445555555
No 162
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.50 E-value=0.079 Score=59.00 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.1
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
+..+++.||+|+|||+.+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997664
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.47 E-value=0.069 Score=60.99 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 401 ILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 401 ~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
.++..+...+...+..+|||||+|. +..+....+++.+-...++..+|+.+
T Consensus 106 ~l~~~~~~~~~~~~~~vliiDe~~~--l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 106 DLLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHTTSCCSSSSSEEEEEECGGG--SCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHHhhccccCCeEEEEEECcch--hcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 3444444444556778999999996 44444444444443333344444443
No 164
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.38 E-value=0.042 Score=69.94 Aligned_cols=66 Identities=14% Similarity=0.279 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
....|.+++..+..+..++|.||+|+|||+.+...+. .+... ...+|++++|+..+|.++.+++..
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~-~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ---GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHH-HHHTT---CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHH-HHHHc---CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 3566677777766788999999999999987665443 33321 234788888999999999998854
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.34 E-value=0.087 Score=60.40 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=25.7
Q ss_pred CCCChhhHHHHHHHHHHhcccccCCc-cccccc-cccccCCchh
Q 000991 750 QPPEPLSVKNAIEYLQIIGALDENEN-LTVLGR-NLSMLPVEPK 791 (1197)
Q Consensus 750 dpP~~~~v~~Al~~L~~lGaLd~~~~-lT~LG~-~ls~lPvdp~ 791 (1197)
+|.....+..+++.|...|.+..... -..-|+ .+-.|.++|.
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~ 359 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALVEDKE 359 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEESSSH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEecCCHH
Confidence 55667778888999999998865321 001332 2455666664
No 166
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.15 E-value=0.038 Score=62.30 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=19.0
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
++.+++.||||+|||+.+- .+...+
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHH
Confidence 6899999999999997654 344433
No 167
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.93 E-value=0.098 Score=55.70 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=28.7
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR 356 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR 356 (1197)
.++..+++|+-||||||.+...+..... .+ .++++++|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~---~g--~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF---AK--QHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH---TT--CCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH---CC--CEEEEEEecc
Confidence 4678889999999999999888776542 22 3566666765
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.92 E-value=0.13 Score=57.27 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=20.2
Q ss_pred HHHHHHHHcCC--eEEEEecCCChHHHHHHH
Q 000991 304 DALLKAISENQ--VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 304 ~~Il~~I~~~~--vvII~apTGSGKTtq~pq 332 (1197)
+.+...+..++ .+++.||+|+|||+.+-.
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 33444444443 699999999999976643
No 169
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.89 E-value=0.2 Score=56.46 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=61.6
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
.+++++++|++||||||.+...... +. ..+....++-.-+.|..+.+....+.+..+..+ + . .....+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~-~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-------~-~-~~s~~~ 170 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATV-------I-S-HSEGAD 170 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-------E-C-CSTTCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HH-hcCCEEEEEccccccHHHHHHHHHHHHHcCCcE-------E-e-cCCccC
Confidence 4568999999999999887655432 22 234444444444666555433333333333221 0 0 001111
Q ss_pred ceEEEEcchHH-HHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHH---c----ccCccceEEEecccC
Q 000991 392 TRLMFCTTGIL-LRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKEL---L----PRRPELRLILMSATL 456 (1197)
Q Consensus 392 t~Ilv~Tpg~L-Lr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~l---l----~~r~~lklIlmSATl 456 (1197)
|..+ .+.+.. ....++++|||||+- +....+-++..++.+ + ...|+--++.+.||.
T Consensus 171 -------~~~v~~~al~~-a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 171 -------PAAVAFDAVAH-ALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp -------HHHHHHHHHHH-HHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred -------HHHHHHHHHHH-HHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 1221 111111 123467899999997 433344443333332 2 223444466677774
No 170
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.69 E-value=0.33 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=18.6
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..++|.||+|+|||+.+-. +...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHH
Confidence 46899999999999976643 44433
No 171
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.56 E-value=0.063 Score=53.75 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=17.9
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.++.+++.||+|||||+.+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 688999999999999976543
No 172
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.29 E-value=0.14 Score=58.29 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.6
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
++.++|.||+|+|||+.+-.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l 65 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFV 65 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 678999999999999766543
No 173
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.24 E-value=0.16 Score=55.37 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.9
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+..++|.||+|+|||+.+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 45788999999999999654
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.09 E-value=0.3 Score=54.80 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=14.5
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
..+++.||+|+|||+.+-.
T Consensus 49 ~~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp SEEEECSSTTSSHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHH
Confidence 3567788899999976543
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.1 Score=59.00 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=21.0
Q ss_pred HHHHHHHHcC--CeEEEEecCCChHHHHHHH
Q 000991 304 DALLKAISEN--QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 304 ~~Il~~I~~~--~vvII~apTGSGKTtq~pq 332 (1197)
+.+...+..+ ..+++.||+|+|||+.+-.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 3455555555 5699999999999976643
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.69 E-value=0.29 Score=53.52 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.4
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...+++.||+|+|||+.+-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45799999999999976643
No 177
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.61 E-value=0.2 Score=56.14 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=16.8
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+..++|.||||+|||+.+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45778999999999999654
No 178
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.53 E-value=0.27 Score=55.14 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~I 334 (1197)
+.+...+..++.++|.||.|+|||+.+-.++
T Consensus 22 ~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 22 RKLEESLENYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCcCCHHHHHHHHH
Confidence 4445555557899999999999997665543
No 179
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.52 E-value=0.5 Score=53.23 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=15.9
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
..++|.||+|+|||+.+-.
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 5799999999999976543
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.42 E-value=0.28 Score=54.26 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.3
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
..+.+++.||+|||||+.+-.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHH
Confidence 367899999999999976643
No 181
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.42 E-value=0.26 Score=55.12 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=60.5
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRD 391 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~ 391 (1197)
.++++.++|++|+||||.+...... +. ..+....++-.-+++..+......+....+..+ + ... ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~-~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~----~~~--~~-- 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YK-GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---L----EVM--DG-- 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HH-HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---E----ECC--TT--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HH-HcCCeEEEecCCcccHhHHHHHHHhcccCCeEE---E----EcC--CC--
Confidence 5678889999999999877654432 22 234455555555666555432222333333211 0 000 00
Q ss_pred ceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 392 TRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 392 t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
..|..+++.....-...++++|||||.-..+.+...+..+.+......|+.-++.+.|+.
T Consensus 163 -----~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 163 -----ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp -----CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 123333332221111256899999999534444333333222211123444455566663
No 182
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.27 E-value=0.44 Score=53.50 Aligned_cols=50 Identities=20% Similarity=0.113 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEec
Q 000991 402 LLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMS 453 (1197)
Q Consensus 402 LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmS 453 (1197)
+...+...|...+..+|||||+|. +..+-.-.+++.+-.-.++..+|+.+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 444555555667899999999996 44444445555443333345555554
No 183
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.18 E-value=0.12 Score=64.63 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 300 YKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
...|.+++.. .+..++|.|+.|||||+.+..-+...+...+ -....|+++..|+.+|.++.+|+....+.
T Consensus 4 ~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 4 NPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-CCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 3456666553 3678899999999999888766655443322 23456888889999999999999876553
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.17 E-value=0.27 Score=59.41 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.2
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+.++++||+|+|||+.+-.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 468999999999999766543
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.01 E-value=0.25 Score=57.34 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.8
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...+++.||+|+|||+.+-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999976543
No 186
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.81 E-value=0.24 Score=55.05 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=19.7
Q ss_pred HHHHHHHcCC--eEEEEecCCChHHHHHHHH
Q 000991 305 ALLKAISENQ--VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 305 ~Il~~I~~~~--vvII~apTGSGKTtq~pq~ 333 (1197)
.+...+..++ .+++.||+|+|||+.+-.+
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 3444444443 4999999999999766443
No 187
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.56 E-value=0.12 Score=54.13 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=28.7
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPR 355 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPr 355 (1197)
.++..++.||.||||||-+.+.+-..... + .+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~--~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA---Q--YKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---T--CCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc---C--CeEEEEccc
Confidence 47899999999999999888887665432 2 345555565
No 188
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.48 E-value=0.32 Score=57.64 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=18.6
Q ss_pred HHHHHcCC--eEEEEecCCChHHHHHH
Q 000991 307 LKAISENQ--VVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 307 l~~I~~~~--vvII~apTGSGKTtq~p 331 (1197)
...+..++ .+++.||+|+|||+.+-
T Consensus 42 ~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 42 PRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp HHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 34455554 59999999999997664
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.46 E-value=0.23 Score=56.99 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.3
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...+++.||+|||||+.+-.
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 45789999999999976643
No 190
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.43 E-value=0.1 Score=69.79 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHcc--CCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 297 LPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAAR--GAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 297 LPi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~--g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
......|.+++.. .+++++|.|..|||||+++..-|+..+.. +. -..-.|+|+.+|+.+|..+.+|+...++.
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~-~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITA-EENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSC-SSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhc-CCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 3455666666654 37899999999999999988777765542 11 13347899999999999999999876643
No 191
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.39 E-value=0.19 Score=63.43 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 299 SYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 299 i~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
+...|.+++.. .+..++|.|+.|||||+.+..-+...+.. ..-....|+++..|+.+|.++.+|+....+.
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~-~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAE-KHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHT-TCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHh-cCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 34455665554 35688899999999998877666554432 1223456888889999999999999876653
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.36 E-value=0.32 Score=52.44 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.1
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
....+++.||+|+|||+.+-.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 457899999999999976543
No 193
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.13 E-value=0.22 Score=57.54 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=17.4
Q ss_pred CCChhhHHHHHHHHHHhcccccC
Q 000991 751 PPEPLSVKNAIEYLQIIGALDEN 773 (1197)
Q Consensus 751 pP~~~~v~~Al~~L~~lGaLd~~ 773 (1197)
+.+...+..+++.|...|.|...
T Consensus 349 ~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 349 PRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEee
Confidence 44556678889999999988654
No 194
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.13 E-value=0.49 Score=52.76 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.5
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...++|+||+|+|||+.+-.
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 46899999999999976543
No 195
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.88 E-value=0.48 Score=56.02 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=19.1
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
...+++.||+|+|||+.+- .+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999997654 4444443
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.49 E-value=0.23 Score=56.05 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=16.2
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
...+++.||+|+|||+.+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999997664
No 197
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.43 E-value=0.67 Score=52.40 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=26.0
Q ss_pred CCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 412 LRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 412 L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
..+..+|||||+|. ++.+....+++.+-...++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999996 66655555554444333455566665543
No 198
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.30 E-value=0.67 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.7
Q ss_pred CeEEEEecCCChHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~I 334 (1197)
+.++|.||.|+|||+.+-.++
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 799999999999997765544
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.28 E-value=0.55 Score=52.35 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=17.4
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..++.+++.||+|||||+.+-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 346789999999999997654
No 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.92 E-value=0.26 Score=51.81 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=22.7
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
+..+..++|.||+||||||.+-+++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999998877666443
No 201
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.75 E-value=0.3 Score=57.63 Aligned_cols=121 Identities=17% Similarity=0.271 Sum_probs=60.5
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCce
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTR 393 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t~ 393 (1197)
.+++++|++|+||||.+........ . .|..+.++-.-|.|..+......+....|..+.. ......
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-~--~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~--------~~~~~~--- 165 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-K--RGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYG--------DETRTK--- 165 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-H--HHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEEC--------CSSSCC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeccccCchHHHHHHHhhhccCcceEe--------cCCCCC---
Confidence 5899999999999998876554432 2 2344555554455544432222222222211100 000000
Q ss_pred EEEEcc-hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcc-cCccceEEEecccC
Q 000991 394 LMFCTT-GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSATL 456 (1197)
Q Consensus 394 Ilv~Tp-g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~-~r~~lklIlmSATl 456 (1197)
.| .++.+.+. .+.++++||||.+-....+ ..+...+..+.. ..|+.-++.+.|+.
T Consensus 166 ----dp~~i~~~~l~---~~~~~D~vIIDT~G~~~~~-~~l~~~l~~i~~~~~~d~vllVvda~~ 222 (432)
T 2v3c_C 166 ----SPVDIVKEGME---KFKKADVLIIDTAGRHKEE-KGLLEEMKQIKEITNPDEIILVIDGTI 222 (432)
T ss_dssp ----SSSTTHHHHHH---TTSSCSEEEEECCCSCSSH-HHHHHHHHHTTSSSCCSEEEEEEEGGG
T ss_pred ----CHHHHHHHHHH---HhhCCCEEEEcCCCCcccc-HHHHHHHHHHHHHhcCcceeEEeeccc
Confidence 11 12223333 2378899999999843332 233343444433 23555556666663
No 202
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=89.48 E-value=1.4 Score=49.58 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeec
Q 000991 563 LIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN 642 (1197)
Q Consensus 563 li~~ll~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATn 642 (1197)
.+..++..+. ..+.+||||+......+-+.+++... ++...-+.|.....+++. .+....|-+.|.
T Consensus 113 ~L~~LL~~l~--~~~~kVLIfsq~t~~LDilE~~l~~~-------~~~y~RlDG~~~~~~~k~-----~~~~~~i~Llts 178 (328)
T 3hgt_A 113 VLRDLINLVQ--EYETETAIVCRPGRTMDLLEALLLGN-------KVHIKRYDGHSIKSAAAA-----NDFSCTVHLFSS 178 (328)
T ss_dssp HHHHHHHHHT--TSCEEEEEEECSTHHHHHHHHHHTTS-------SCEEEESSSCCC------------CCSEEEEEEES
T ss_pred HHHHHHHHHH--hCCCEEEEEECChhHHHHHHHHHhcC-------CCceEeCCCCchhhhhhc-----ccCCceEEEEEC
Confidence 3334444442 24569999999988888888888764 566777888754433221 245567777777
Q ss_pred ccccccc-----cCCEEEEEeCCCCCcccccCCCCCCCccccccCHhhHHhhhcccCCC-----CCCeEEEeccccchhh
Q 000991 643 MAETSIT-----INDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRV-----QPGECYHLYPRYVYDA 712 (1197)
Q Consensus 643 iaEtGId-----IPdV~~VId~G~~k~~~yD~~~~~~~l~~~~iSkas~~QR~GRAGR~-----~~G~cy~Lys~~~~~~ 712 (1197)
...-|++ .-..+.||- ||+.-+... ...|..-||-|. .+=.+|||.+....+.
T Consensus 179 ag~~gin~~~~nl~~aD~VI~--------~DsdwNp~~---------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLIC--------LDTTVDTSQ---------KDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEE--------CSTTCCTTS---------HHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCCCcCcccccCCCCCEEEE--------ECCCCCCCC---------hHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 6666675 445666665 665555443 233555555444 3457899998776654
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.16 E-value=0.34 Score=54.75 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.4
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
.+.+++.||+|||||+.+-.
T Consensus 45 ~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 46899999999999966543
No 204
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.07 E-value=1.5 Score=53.88 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~p 331 (1197)
+.+...+..+..+++.||+||||||.+-
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHH
Confidence 4455567788999999999999997664
No 205
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.05 E-value=0.22 Score=55.23 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.2
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
.+++.||+|+|||+.+-.
T Consensus 40 ~~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIA 57 (319)
T ss_dssp CEEEESSSSSSHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHH
Confidence 599999999999976643
No 206
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.91 E-value=0.32 Score=57.71 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
+.++-.+..+..++|.|++|+||||.+.+++.....
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444445667899999999999999988887776543
No 207
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.57 E-value=1.1 Score=52.62 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=31.8
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMA 361 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~q 361 (1197)
.+++++++|++||||||.+...... +. ..+....++-.-+.+..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~--l~-~~g~~Vllvd~D~~r~aa~~ 143 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YK-GKGRRPLLVAADTQRPAARE 143 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH--HH-TTTCCEEEEECCSSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HH-HcCCeEEEeeccccCchhHH
Confidence 4568889999999999887654432 22 34555666666677776654
No 208
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.47 E-value=0.6 Score=51.92 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.4
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
...+++.||+|+|||+.+-
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578899999999996553
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.34 E-value=1.3 Score=55.93 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.6
Q ss_pred eEEEEecCCChHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 315 vvII~apTGSGKTtq~p 331 (1197)
.+++.||||+|||+.+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999996553
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.22 E-value=0.55 Score=55.52 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.2
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
.+.+++.||+|+|||+.+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999997654
No 211
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.89 E-value=1.1 Score=52.73 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=35.8
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHcc-CCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAAR-GAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~-g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
++++++|++|+||||.+........ .+ |..+.++-.=|.|..+......+....+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~---~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~ 156 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLR---EKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH---HTSCCCEEEEECCCSSTTHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---HhcCCeEEEEecCCCCccHHHHHHhhcccCC
Confidence 5788899999999998876654322 23 6666666666777666554333333333
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.62 E-value=0.35 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.0
Q ss_pred HHHcCCeEEEEecCCChHHHHH
Q 000991 309 AISENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~ 330 (1197)
+...+..+++.||+|+|||+.+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456788999999999999654
No 213
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.43 E-value=1.2 Score=50.63 Aligned_cols=57 Identities=25% Similarity=0.287 Sum_probs=31.5
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
.+.++.++||+||||||.+-...- .+. ..+....+.-.-..|..+.......+...|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag--~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN--WLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHH-hcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 577999999999999987754432 222 233333333333344444443333444333
No 214
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.03 E-value=0.41 Score=56.59 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+.++..+..+..++|.|++|+|||+.+.+++....
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44444566789999999999999998888777654
No 215
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.95 E-value=1.1 Score=50.16 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
+.+++++|++|+||||.+........ ..+....++-.-|.|..+......+....|..+-. + . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~------~-~~--- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E------P-GE--- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C------T-TC---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c------C-CC---
Confidence 56888999999999988766544322 23555666666677766554333333333322110 0 0 00
Q ss_pred eEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCC-ChhHHHHHHHHHc-ccCccceEEEecccC
Q 000991 393 RLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGM-NEDFLLIVLKELL-PRRPELRLILMSATL 456 (1197)
Q Consensus 393 ~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~-~~D~Ll~lLr~ll-~~r~~lklIlmSATl 456 (1197)
..|..++......-.-.++++||||=+-.... ..+.+...++.+. ...++.-++.+.|+.
T Consensus 163 ----~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 ----KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 12333332221110115789999999863321 2333443333221 123555566677763
No 216
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.54 E-value=0.76 Score=53.52 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.2
Q ss_pred CCeEEEEecCCChHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~ 330 (1197)
.+-+++.||+|||||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 467999999999999544
No 217
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.34 E-value=0.39 Score=49.21 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.0
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.++.++|+||+||||||.+-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 578999999999999986644
No 218
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.11 E-value=0.51 Score=49.91 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHH
Q 000991 298 PSYKERDALLKAISENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 298 Pi~~~q~~Il~~I~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
|-..-+..+++.+..++.+.|.||.||||||.+-..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHH
Confidence 333345678888999999999999999999876543
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.67 E-value=0.79 Score=53.95 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.4
Q ss_pred CCeEEEEecCCChHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~ 330 (1197)
.+-+++.||+|||||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 467999999999999654
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.66 E-value=0.87 Score=53.84 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.9
Q ss_pred cCCeEEEEecCCChHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~ 330 (1197)
..+-+++.||+|||||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 4578999999999999654
No 221
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.60 E-value=0.45 Score=65.47 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.3
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
..+++++++||+|||||+.+.+++.+..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999988887654
No 222
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.11 E-value=0.61 Score=53.61 Aligned_cols=27 Identities=48% Similarity=0.726 Sum_probs=21.8
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHH
Q 000991 306 LLKAISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 306 Il~~I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+--.+..+..++|+|||||||||.+-.
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHH
Confidence 334567899999999999999986643
No 223
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.10 E-value=0.77 Score=48.11 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=26.0
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEE
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSII 350 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Ii 350 (1197)
....++|.+++|.||||++.-..+..+ +.|..+.++
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEE
Confidence 456788889999999999987777655 444444333
No 224
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.05 E-value=0.75 Score=48.86 Aligned_cols=29 Identities=38% Similarity=0.562 Sum_probs=24.3
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..+..++|.|++||||||.+.+++...+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999998888776644
No 225
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.97 E-value=0.34 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..++|+|||||||||.+-.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHH
Confidence 56788999999999999987643
No 226
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.79 E-value=0.56 Score=56.52 Aligned_cols=27 Identities=44% Similarity=0.495 Sum_probs=21.8
Q ss_pred HHHHHHHcCCeEEEEecCCChHHHHHH
Q 000991 305 ALLKAISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 305 ~Il~~I~~~~vvII~apTGSGKTtq~p 331 (1197)
.+--.+..+.+++|+|||||||||.+-
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLN 278 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHH
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHH
Confidence 344456789999999999999998663
No 227
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.71 E-value=0.47 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..++|+||+||||||++-.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999987754
No 228
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.70 E-value=0.88 Score=45.64 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHHHHHHHc--CCeEEEEecCCChHHHHHHHH
Q 000991 303 RDALLKAISE--NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 303 q~~Il~~I~~--~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+.+.+.+.. ...++|+||+|+|||+.+-.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 3445555543 468999999999999766433
No 229
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.68 E-value=0.47 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=18.7
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
..+..+.|.||+||||||.+-.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 4688999999999999987654
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.60 E-value=0.51 Score=49.54 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.1
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..++|+||+||||||.+-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 578999999999999987654
No 231
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=84.30 E-value=0.91 Score=42.47 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=40.0
Q ss_pred CCCCcceeeec--cCCceEEEEEEcC----eeeeccCCCchhhHHHHHHHHHHHHHcC
Q 000991 1120 HGAPAYKTKQL--KNNQFRSTVIFNG----LNFVGQPCGNKKLAEKDAAAEALLWLRG 1171 (1197)
Q Consensus 1120 ~~~p~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1197)
...|.|..... .++.| ++|.+=. ..|.|.|+.|||.|.+.||-+|..-|-.
T Consensus 24 ~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~ 80 (102)
T 2kou_A 24 QPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHN 80 (102)
T ss_dssp CSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHH
Confidence 46788885322 24457 9998644 3789999999999999999999988863
No 232
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.99 E-value=1.4 Score=46.75 Aligned_cols=31 Identities=39% Similarity=0.608 Sum_probs=25.8
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESETE 340 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~~~ 340 (1197)
+..+..++|.|++|+|||+.+.+++.+.+..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~ 57 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE 57 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4468899999999999999988888775543
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.52 E-value=5.5 Score=44.84 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=28.7
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISA 359 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA 359 (1197)
..++++.++|++|+||||.+...... +. ..+....++-.-+.|..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~--l~-~~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY--YA-ELGYKVLIAAADTFRAGA 148 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH--HH-HTTCCEEEEECCCSCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HH-HCCCeEEEEeCCCcchhH
Confidence 34668999999999999877654432 22 234445444444555544
No 234
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.51 E-value=0.61 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHcCCeEEEEecCCChHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..+..++|+|++||||||.+-..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHH
Confidence 356789999999999999887543
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.21 E-value=0.58 Score=48.80 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=16.7
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.++.++|+||+||||||.+-.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 578899999999999987654
No 236
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.04 E-value=0.73 Score=46.27 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.4
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
...++|.||+|+|||+.+-.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 578999999999999766544
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.87 E-value=0.5 Score=47.04 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=16.8
Q ss_pred CeEEEEecCCChHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ 333 (1197)
..++|+|++||||||++-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999987654
No 238
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.77 E-value=1.3 Score=52.25 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.4
Q ss_pred CCeEEEEecCCChHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~ 330 (1197)
.+-+++.||+|||||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 567999999999999654
No 239
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.72 E-value=0.71 Score=52.41 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=20.4
Q ss_pred HHHHHcCCeEEEEecCCChHHHHHH
Q 000991 307 LKAISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 307 l~~I~~~~vvII~apTGSGKTtq~p 331 (1197)
--.+..++.+.|+|||||||||.+-
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHH
T ss_pred hhhccCCCEEEEECCCCCCHHHHHH
Confidence 3445789999999999999998543
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.69 E-value=0.47 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..++|+|+.||||||.+-.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 45688999999999999987643
No 241
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.48 E-value=2 Score=49.34 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=24.1
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..+..++|.|++|||||+.+.+++.+..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 44688999999999999998888776644
No 242
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.47 E-value=0.67 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..++.+.|+||+||||||.+-.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 46799999999999999986643
No 243
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.43 E-value=4.8 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=18.2
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+.++.|.|++||||||.+-..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~L 313 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKL 313 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHH
Confidence 4668999999999999877543
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.13 E-value=0.75 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.7
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
..++.++|+||+||||||.+-.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHH
Confidence 3689999999999999986654
No 245
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.02 E-value=3 Score=50.08 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=61.5
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcccceeeeEeeeccccCCCc
Q 000991 313 NQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDT 392 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~lg~~VGy~ir~e~~~~~~t 392 (1197)
..+++++|++|+||||.+...+.... ..|....++..=|.|..+...........+..+ ++ . ....+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~---~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~--~----~~~~d- 167 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ---RKGWKTCLICADTFRAGAFDQLKQNATKARIPF---YG--S----YTEMD- 167 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EE--C----CCCSC-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEeccccchhHHHHHHHHhhccCceE---Ec--c----CCCCC-
Confidence 34788999999999998876654322 234555555544556555443333333333221 01 0 00001
Q ss_pred eEEEEcc-hHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecccC
Q 000991 393 RLMFCTT-GILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATL 456 (1197)
Q Consensus 393 ~Ilv~Tp-g~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSATl 456 (1197)
| .++.+.+.. -...+++++|||-+=....+.++...+.+..-...++.-++.+.|+.
T Consensus 168 ------p~~i~~~al~~-~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 168 ------PVIIASEGVEK-FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp ------HHHHHHHHHHH-HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred ------HHHHHHHHHHH-HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 1 111111111 01156899999998643333333333221111124666677888875
No 246
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=81.99 E-value=0.38 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=18.9
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
..+..+.++||.||||||.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4678999999999999987764
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=81.77 E-value=0.72 Score=47.34 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=16.6
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
++.++|+||+||||||.+-.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46789999999999986643
No 248
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.67 E-value=0.64 Score=47.31 Aligned_cols=20 Identities=50% Similarity=0.664 Sum_probs=17.4
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
+..++|+|+.||||||++-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56899999999999998754
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.41 E-value=0.82 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=18.2
Q ss_pred HHHcCCeEEEEecCCChHHHHHH
Q 000991 309 AISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~p 331 (1197)
.+..++.+.|.||+||||||.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 46889999999999999998664
No 250
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.40 E-value=1.6 Score=51.31 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.7
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
.+-+++.||+|||||+.+-
T Consensus 206 prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCEEEEESCTTTTHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999996553
No 251
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=81.35 E-value=0.62 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=20.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~I 334 (1197)
+.+.++++|.||+||||+||+-...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999986544
No 252
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.22 E-value=0.84 Score=46.42 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=17.9
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
...++++|++||||||++-..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 568999999999999877654
No 253
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.09 E-value=1.5 Score=51.36 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.3
Q ss_pred CCeEEEEecCCChHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~ 330 (1197)
.+-+++.||+|||||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 567999999999999644
No 254
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.96 E-value=1.3 Score=47.11 Aligned_cols=28 Identities=39% Similarity=0.633 Sum_probs=23.1
Q ss_pred HHHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 309 AISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
.+..+..+.|.||+||||||.+-+.+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999887766543
No 255
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.92 E-value=0.72 Score=52.44 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=16.8
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..++|+||||||||+.+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 345899999999999976543
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=80.84 E-value=0.84 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..++|+||+||||||++-.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHH
Confidence 35688999999999999987654
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.77 E-value=1.6 Score=55.87 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=17.2
Q ss_pred CeEEEEecCCChHHHHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
..+++.||||+|||+.+- .+.+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~-~la~~ 611 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK-TLAAT 611 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHHH
Confidence 378999999999996553 44443
No 258
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.47 E-value=0.75 Score=52.80 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..+..++|+|||||||||.+-
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 456799999999999998664
No 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.36 E-value=0.76 Score=46.36 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=16.9
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
+..++++|+.||||||.+-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56899999999999987643
No 260
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.35 E-value=0.77 Score=51.66 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.3
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
+..++|+||||||||+.+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHH
Confidence 45789999999999976543
No 261
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=79.96 E-value=1.1 Score=45.67 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.8
Q ss_pred HHcCCeEEEEecCCChHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..+..++|+|+.||||||++-..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 346778999999999999987654
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=79.79 E-value=0.67 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..++|+|||||||||.+-.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999987654
No 263
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.75 E-value=1.6 Score=49.06 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+.++-.+..+..++|+|++|+|||+.+.+++...+
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44445567799999999999999998888877654
No 264
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.60 E-value=1.3 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=19.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
+.....++|+|++||||||++-..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 445778999999999999987543
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=79.51 E-value=0.81 Score=45.93 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=17.4
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..++|+|+.||||||.+-.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357899999999999987643
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.35 E-value=1.3 Score=51.85 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=17.5
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..++|+|||||||||.+-.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~a 186 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYA 186 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHH
Confidence 467899999999999986643
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=79.21 E-value=0.6 Score=49.66 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=15.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..+.|.||+||||||.+-.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp EECCCEEEEECSCC----CHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999987654
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.94 E-value=1.1 Score=44.79 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.8
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
.++|+|+.||||||++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999987754
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.94 E-value=0.96 Score=49.13 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=15.9
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++|+|||||||||.+-..
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5789999999999877543
No 270
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.93 E-value=2.2 Score=53.83 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCC-----------eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHH
Q 000991 300 YKERDALLKAISENQ-----------VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAA 368 (1197)
Q Consensus 300 ~~~q~~Il~~I~~~~-----------vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~ 368 (1197)
....+.+..++.... .+++.||||+||| .+...+.+.+ ...++.
T Consensus 464 ~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT-~la~~la~~l-------~~~~~~----------------- 518 (758)
T 1r6b_X 464 DKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKT-EVTVQLSKAL-------GIELLR----------------- 518 (758)
T ss_dssp HHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHH-HHHHHHHHHH-------TCEEEE-----------------
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHH-HHHHHHHHHh-------cCCEEE-----------------
Q ss_pred HhCCcccceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccC----
Q 000991 369 ERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRR---- 444 (1197)
Q Consensus 369 e~g~~lg~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r---- 444 (1197)
..+........-..-...+...+-+...+.+...+...+ .++|+|||++. +..+.+..+++.+-...
T Consensus 519 ---i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~----~~vl~lDEi~~--~~~~~~~~Ll~~le~~~~~~~ 589 (758)
T 1r6b_X 519 ---FDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHP----HAVLLLDEIEK--AHPDVFNILLQVMDNGTLTDN 589 (758)
T ss_dssp ---EEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCS----SEEEEEETGGG--SCHHHHHHHHHHHHHSEEEET
T ss_pred ---EechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCC----CcEEEEeCccc--cCHHHHHHHHHHhcCcEEEcC
Q ss_pred -------ccceEEEec
Q 000991 445 -------PELRLILMS 453 (1197)
Q Consensus 445 -------~~lklIlmS 453 (1197)
.+..+|+.|
T Consensus 590 ~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 590 NGRKADFRNVVLVMTT 605 (758)
T ss_dssp TTEEEECTTEEEEEEE
T ss_pred CCCEEecCCeEEEEec
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.86 E-value=0.93 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=17.8
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++|+||||+|||+.+..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4667899999999999876543
No 272
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=78.85 E-value=1.1 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=17.9
Q ss_pred HcCCeEEEEecCCChHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.....++|+|++||||||++-..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHH
Confidence 34578999999999999987543
No 273
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=78.74 E-value=3.9 Score=42.25 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHH--HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCcc
Q 000991 297 LPSYKERDALLKAI--SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKL 374 (1197)
Q Consensus 297 LPi~~~q~~Il~~I--~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~l 374 (1197)
+|-..-|.+.+..+ ...++.+|.|.-|++|+.....-++...-+. | ..|.++.|+...+..+++.+. .-
T Consensus 33 ~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--G--r~V~vLAp~~~s~~~l~~~~~-----l~ 103 (189)
T 2l8b_A 33 VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--G--REVQIIAADRRSQMNMKQDER-----LS 103 (189)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--T--CCEEEECSTTHHHHHHSCTTT-----CS
T ss_pred cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--C--eEEEEEcCchHHHHHHHhhcC-----cC
Confidence 34443344555555 4578999999999999988665555544332 2 357777799887776654330 00
Q ss_pred cceeeeEeeeccccCCCceEEEEcchHHHHHHhcCCCCCCccEEEEecCCCCCCChhHHHHHHHHHcccCccceEEEecc
Q 000991 375 GESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA 454 (1197)
Q Consensus 375 g~~VGy~ir~e~~~~~~t~Ilv~Tpg~LLr~L~~d~~L~~is~VIIDEaHeR~~~~D~Ll~lLr~ll~~r~~lklIlmSA 454 (1197)
+..+ |.-. ++..+..+..=+.+||||+-.. ...-++.++..... .+.|+|+|--
T Consensus 104 ~~t~-------------------t~~~---ll~~~~~~tp~s~lIVD~AekL--S~kE~~~Lld~A~~--~naqvvll~~ 157 (189)
T 2l8b_A 104 GELI-------------------TGRR---QLLEGMAFTPGSTVIVDQGEKL--SLKETLTLLDGAAR--HNVQVLITDS 157 (189)
T ss_dssp SCSS-------------------STTT---TTTTSCCCCCCCEEEEEESSSH--HHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred ccee-------------------ehhh---hhcCCCCCCCCCEEEEechhhc--CHHHHHHHHHHHHh--cCCEEEEeCC
Confidence 1111 1100 1111212455568999999863 33333444444333 4688888754
Q ss_pred c
Q 000991 455 T 455 (1197)
Q Consensus 455 T 455 (1197)
+
T Consensus 158 ~ 158 (189)
T 2l8b_A 158 G 158 (189)
T ss_dssp S
T ss_pred c
Confidence 4
No 274
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=78.11 E-value=1.1 Score=47.30 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.0
Q ss_pred eEEEEecCCChHHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~I 334 (1197)
++++.||+||||+||+-...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57889999999999997644
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.06 E-value=0.9 Score=46.16 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=18.3
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++++|+.||||||++-..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999988654
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=77.93 E-value=1.1 Score=44.92 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=16.5
Q ss_pred CeEEEEecCCChHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ 333 (1197)
..++++|++||||||++-..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 36899999999999987543
No 277
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=77.70 E-value=1.2 Score=45.02 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.1
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
...+++|+|++||||||++-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 567899999999999987754
No 278
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.55 E-value=1 Score=50.51 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.1
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...++|+||||||||+.+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIE 29 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHH
Confidence 34789999999999976643
No 279
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=77.50 E-value=0.96 Score=47.13 Aligned_cols=26 Identities=31% Similarity=0.221 Sum_probs=22.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~IL 335 (1197)
+..+..++|.|++||||||.+.+++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998877765
No 280
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=77.45 E-value=1.3 Score=45.94 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=18.3
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
..+..++|+|+.||||||.+-.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3578999999999999987754
No 281
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.70 E-value=0.88 Score=47.74 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=21.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~IL 335 (1197)
+..++.+.|.||+||||||.+-+.+-
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987766543
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.53 E-value=1.3 Score=45.18 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.0
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++++|+.||||||++-..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999987543
No 283
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.48 E-value=1.4 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.5
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++|+|+.||||||++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999988643
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.42 E-value=1.4 Score=45.13 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.8
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..++|+|+.||||||++-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999987743
No 285
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.29 E-value=1.3 Score=44.26 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.4
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
-++++|.|+.||||||++-..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHH
Confidence 478999999999999987543
No 286
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=75.85 E-value=1.5 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=18.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..++.++|+||.||||||.+-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 46789999999999999986543
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.54 E-value=1.7 Score=45.16 Aligned_cols=18 Identities=44% Similarity=0.756 Sum_probs=15.2
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
+-+||+||.|+||||.+-
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 568999999999997553
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=75.50 E-value=1.4 Score=44.44 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=17.7
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..++|+|+.||||||.+-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 366899999999999987754
No 289
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=75.46 E-value=1.3 Score=44.91 Aligned_cols=20 Identities=45% Similarity=0.549 Sum_probs=17.1
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...++|+|++||||||++-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45789999999999998754
No 290
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=74.84 E-value=2.9 Score=46.69 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.2
Q ss_pred HcCCeEEEEecCCChHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
..+.++.+.||+||||||.+-..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~L 120 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKL 120 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999877543
No 291
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=74.75 E-value=2.6 Score=46.33 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.8
Q ss_pred cCCeEEEEecCCChHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~p 331 (1197)
....+++.||+|+|||+.+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 46789999999999997654
No 292
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.48 E-value=1.8 Score=48.54 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCeEEEEecCCChHHHHHH
Q 000991 303 RDALLKAISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 303 q~~Il~~I~~~~vvII~apTGSGKTtq~p 331 (1197)
...+..++..+..+++.||+|+|||+.+-
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 35556666778899999999999996553
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=74.30 E-value=1.6 Score=44.17 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=16.2
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++|+|+.||||||++-..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999988643
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=74.19 E-value=1.5 Score=45.36 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.6
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
..+..++|.|+.||||||.+-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4578999999999999987743
No 295
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=74.18 E-value=1.2 Score=46.17 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..+.|+|++||||||.+-.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 44577899999999999987643
No 296
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=74.17 E-value=1.1 Score=48.32 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 56899999999999999754
No 297
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.17 E-value=1.6 Score=45.57 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=16.1
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++|+|+.||||||++-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999988654
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=74.06 E-value=1.6 Score=45.15 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.9
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...++|+|+.||||||++-.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35899999999999987754
No 299
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=74.02 E-value=1.3 Score=46.98 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+..+..++|.||+||||||.+.+++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999888776654
No 300
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=73.84 E-value=1.6 Score=49.72 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.8
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
..++|+|||||||||.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHH
Confidence 4789999999999986643
No 301
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=73.82 E-value=1.8 Score=45.51 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.4
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..+.|.|++||||||++-..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 467899999999999877543
No 302
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=73.81 E-value=1.5 Score=45.85 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..+..+.|.||+||||||.+-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 357789999999999998664
No 303
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=73.71 E-value=1.6 Score=49.35 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.4
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
..++|+|||||||||.+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478999999999997654
No 304
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=73.67 E-value=1.6 Score=45.27 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=17.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..+..+.|.||+||||||.+-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHH
Confidence 356788999999999998764
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.60 E-value=1.6 Score=45.04 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=18.2
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++|.|+.||||||++-..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3567899999999999988654
No 306
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=73.59 E-value=2.4 Score=48.31 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.6
Q ss_pred cCCeEEEEecCCChHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~p 331 (1197)
....+++.||+|||||+.+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999997554
No 307
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=73.46 E-value=1.8 Score=43.90 Aligned_cols=20 Identities=45% Similarity=0.571 Sum_probs=16.7
Q ss_pred CeEEEEecCCChHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ 333 (1197)
..++|+|+.||||||++-..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999987543
No 308
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=73.40 E-value=1.4 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=17.0
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..++++||.||||||.+-..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 357889999999999876544
No 309
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=73.29 E-value=1.7 Score=45.68 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=17.7
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
...++|.|+.||||||++-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999988653
No 310
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.21 E-value=1.9 Score=45.24 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=17.8
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..+++.|+.||||||++-..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 567899999999999988654
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.21 E-value=1.9 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=18.6
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++|+|+.||||||++-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999988643
No 312
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.14 E-value=1.7 Score=45.31 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=16.1
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++|+|+.||||||++-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999988654
No 313
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=72.97 E-value=1.8 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=18.6
Q ss_pred cCCeEEEEecCCChHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~I 334 (1197)
....++|+|+.||||||++-...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999886543
No 314
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.88 E-value=2.1 Score=59.11 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=26.8
Q ss_pred HHHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 309 AISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
.+..+++++++|++|||||+.+.+++.+.+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999998865
No 315
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=72.78 E-value=1.9 Score=44.20 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.1
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++|.|+.||||||++-..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5789999999999987643
No 316
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.61 E-value=2.7 Score=45.86 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.3
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
.....+++.||+|+|||+.+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 346789999999999997654
No 317
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.59 E-value=2.6 Score=47.51 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=21.4
Q ss_pred HHHHHHHcCCe--EEEEecCCChHHHHHHHH
Q 000991 305 ALLKAISENQV--VVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 305 ~Il~~I~~~~v--vII~apTGSGKTtq~pq~ 333 (1197)
.+...+..++. +++.||+|+||||.+-.+
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 34445566665 999999999999776543
No 318
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.59 E-value=1.7 Score=43.98 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=17.8
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..++++|+.||||||++-.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467889999999999987753
No 319
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=72.56 E-value=2.5 Score=49.44 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=29.9
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISA 359 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA 359 (1197)
.+.+++|.|+||||||+.+. .++..++.. + ..++|+=|..+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~-~li~~~~~~--g--~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLR-ELAYTGLLR--G--DRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHH-HHHHHHHHT--T--CEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHH-HHHHHHHHC--C--CcEEEEeCCCchh
Confidence 47889999999999998754 344444432 2 3566667877764
No 320
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.21 E-value=1.6 Score=48.22 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 306 LLKAISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 306 Il~~I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+.-.+..+..++|.|++||||||.+.+.+..
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3334567999999999999999887766654
No 321
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=72.17 E-value=1.6 Score=47.87 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHcCCeEEEEecCCChHHHHHHHHHH
Q 000991 309 AISENQVVVVSGETGCGKTTQLPQYIL 335 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~pq~IL 335 (1197)
.+..+..++|.||+||||||.+.+++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356789999999999999998887776
No 322
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.09 E-value=1.9 Score=43.14 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.3
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
..++|+|+.||||||++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999988754
No 323
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=72.07 E-value=2.2 Score=44.19 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.8
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++|+|+.||||||++-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999988654
No 324
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=72.01 E-value=1.3 Score=47.74 Aligned_cols=21 Identities=43% Similarity=0.855 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999997553
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=71.93 E-value=2.2 Score=44.06 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.3
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..++|+|+.||||||++-..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987543
No 326
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=71.46 E-value=2.1 Score=44.82 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.1
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++|.|+.||||||++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999988654
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.43 E-value=2 Score=43.50 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.7
Q ss_pred CeEEEEecCCChHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ 333 (1197)
..++|+|+.||||||++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999887543
No 328
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=71.33 E-value=2.7 Score=45.20 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.9
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
.+.+++.||+|||||+.+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4569999999999997664
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.25 E-value=2.1 Score=44.20 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=17.2
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
...++|+|+.||||||++-..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 347899999999999987543
No 330
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=71.20 E-value=1.4 Score=45.80 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=16.2
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++|+|+.||||||++-..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5789999999999988653
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=71.19 E-value=1.8 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=13.8
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
....++++|+.||||||++-..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999987643
No 332
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=71.18 E-value=2 Score=43.83 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.1
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.+++.|+.||||||++-..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999988653
No 333
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=71.08 E-value=1.9 Score=45.12 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..++++|+.||||||++-.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999988754
No 334
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.96 E-value=2.1 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..++.+.|.||+||||||.+-.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~l 145 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNS 145 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHH
Confidence 46799999999999999986643
No 335
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.84 E-value=1.9 Score=50.13 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=15.1
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
..++|+||||||||+.+.
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 468899999999997654
No 336
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=70.84 E-value=3.1 Score=43.15 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=17.3
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..+.|+|+.||||||.+-.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356899999999999987653
No 337
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=70.84 E-value=2.1 Score=43.64 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.5
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++++|+.||||||++-..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999987643
No 338
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=70.39 E-value=1.4 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.2
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999998653
No 339
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=70.27 E-value=1.5 Score=46.76 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56889999999999999755
No 340
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=70.22 E-value=1.8 Score=44.25 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=15.9
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
+.+.|+|++||||||.+-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp CEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987754
No 341
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=70.21 E-value=2.2 Score=43.39 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.0
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++++|+.||||||++-..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999988543
No 342
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=70.16 E-value=1.3 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.4
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|+||+||||||.+-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 579999999999999998653
No 343
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=70.06 E-value=2.5 Score=50.71 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~ 330 (1197)
+.++.++..+..+++.||+|+|||+.+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 456666778899999999999999644
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=70.06 E-value=2.2 Score=42.44 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=15.6
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
.++|+|+.||||||++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999988754
No 345
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=69.65 E-value=1.9 Score=43.37 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=15.9
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.++|+|+.||||||.+-..
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999877543
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=69.54 E-value=2.8 Score=42.33 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.3
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
...+|+||+||||||.+-
T Consensus 27 g~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGD 44 (182)
T ss_dssp SEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 488999999999997654
No 347
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.52 E-value=2 Score=47.52 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.7
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..++++|+.||||||.+-..
T Consensus 33 ~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999887654
No 348
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.41 E-value=2.4 Score=46.82 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.5
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
..+++.||+|+|||+.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 479999999999997664
No 349
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=69.40 E-value=2.6 Score=44.77 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.4
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
....+++.|++||||||++-..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999988654
No 350
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=69.31 E-value=2.7 Score=44.06 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.4
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+..+++.|+.||||||++-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999988643
No 351
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=69.23 E-value=1.5 Score=46.47 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=18.0
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999997553
No 352
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=69.22 E-value=4.5 Score=46.33 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=18.9
Q ss_pred HcCCeEEEEecCCChHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
..+.++.+.||+||||||.+-..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~L 177 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKL 177 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHH
Confidence 35678999999999999877543
No 353
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=69.15 E-value=2.6 Score=45.09 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.9
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
....++|.|+.||||||++-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 357899999999999987754
No 354
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=69.13 E-value=1.6 Score=47.33 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999997653
No 355
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=69.06 E-value=1.6 Score=46.69 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999997553
No 356
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.89 E-value=3.4 Score=49.73 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=26.2
Q ss_pred HHHcCCeEEEEecCCChHHHHHHHHHHHHHHH
Q 000991 309 AISENQVVVVSGETGCGKTTQLPQYILESETE 340 (1197)
Q Consensus 309 ~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~ 340 (1197)
.+..++.+.|.||+||||||.+-++++.-+..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 34578999999999999999998876665553
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.72 E-value=3.2 Score=46.85 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=15.2
Q ss_pred eEEEEecCCChHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 315 vvII~apTGSGKTtq~p 331 (1197)
++-|.||+||||||.+-
T Consensus 94 iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999998764
No 358
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=68.69 E-value=3.2 Score=52.61 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.9
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
.+-+++.||+|||||+.+-
T Consensus 238 p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999996553
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=68.64 E-value=2 Score=45.76 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=18.2
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
..+..+.|.|+.||||||++-.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHH
Confidence 3577899999999999987643
No 360
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=68.59 E-value=1.7 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.2
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999997653
No 361
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=68.56 E-value=2.2 Score=43.97 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=15.2
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
.+.|+|+.||||||.+-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 588999999999987643
No 362
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.52 E-value=4.4 Score=46.70 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=26.9
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRI 357 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~ 357 (1197)
.+.+++|.|+||||||+.+-..+.. .. ..+ ..|++.=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~-~~--~~~--~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR-EY--MQG--SRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH-HH--TTT--CCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH-HH--HCC--CEEEEEeCCcC
Confidence 5788999999999999766544433 32 222 34555556544
No 363
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=68.27 E-value=1.7 Score=47.37 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHH
Confidence 57899999999999999755
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.19 E-value=2.6 Score=44.57 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.2
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.+++.|+.||||||++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999988654
No 365
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=68.12 E-value=1.7 Score=47.47 Aligned_cols=20 Identities=35% Similarity=0.636 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 57889999999999999755
No 366
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.09 E-value=4 Score=46.18 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.5
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
++.+++.||+|+|||+.+-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 36899999999999976543
No 367
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=68.05 E-value=3.2 Score=49.83 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
..+..++|.|+||||||+.+-..++..+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999977665555433
No 368
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=68.04 E-value=3.8 Score=41.20 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..+.++.+.||.||||||.+-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999997553
No 369
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=68.01 E-value=6.6 Score=44.57 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
+.++..+..+..++|.|++|+|||+.+.+++...+.
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 444445677999999999999999988888776543
No 370
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=67.92 E-value=1.7 Score=46.75 Aligned_cols=20 Identities=45% Similarity=0.723 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 57889999999999999755
No 371
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=67.89 E-value=1.7 Score=47.63 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 57899999999999999755
No 372
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=67.85 E-value=1.5 Score=47.26 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=18.0
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999997553
No 373
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=67.73 E-value=4.8 Score=45.86 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=24.3
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..++.++|.|++||||||.+.+++....
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44689999999999999998888876644
No 374
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=67.56 E-value=2.6 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.8
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..+++.|+.||||||++-..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 5778999999999999988543
No 375
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.39 E-value=2.7 Score=43.01 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.4
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...+.|+|++||||||++-.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34688999999999987754
No 376
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=67.32 E-value=3.6 Score=46.44 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=16.1
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
..+++.||+|+||||.+-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6799999999999976643
No 377
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=67.13 E-value=2.8 Score=46.98 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=23.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
+..+..++|.|++|||||+.+.+++.+.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999888887753
No 378
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.92 E-value=3.2 Score=49.04 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESET 339 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~ 339 (1197)
+.++..+..+..++|.|++|+|||+.+.+++...+.
T Consensus 188 D~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 188 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp HHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 444445677899999999999999999888877553
No 379
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=66.87 E-value=3 Score=46.68 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=18.3
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+.++.|.||+||||||.+-..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~L 122 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKL 122 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4679999999999999877543
No 380
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.55 E-value=1.9 Score=46.94 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 578999999999999997553
No 381
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=66.54 E-value=2.4 Score=42.13 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=15.5
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
....+|.||+|||||+.+-
T Consensus 23 ~g~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLD 41 (149)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3578999999999997643
No 382
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=66.47 E-value=2 Score=47.13 Aligned_cols=21 Identities=52% Similarity=0.729 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHH
Confidence 578999999999999997553
No 383
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=66.45 E-value=5.2 Score=45.78 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+..++.++|.|++||||||.+.+++.+..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44688999999999999999888877654
No 384
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=66.36 E-value=2.3 Score=49.50 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
|..+..+.|.||+||||||.+.++++..
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 4568999999999999999888776553
No 385
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=66.23 E-value=2 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.2
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999997553
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=66.17 E-value=3.2 Score=43.03 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.8
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
++.+.|.||+||||||.+-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 46789999999999987654
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=65.92 E-value=2.7 Score=45.57 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.0
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...++++|+.||||||++-.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 45789999999999998754
No 388
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=65.78 E-value=3.3 Score=44.71 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.2
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
..+.++.|.||.||||||.+-.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3567899999999999987643
No 389
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=65.74 E-value=3.4 Score=42.34 Aligned_cols=17 Identities=41% Similarity=0.792 Sum_probs=14.5
Q ss_pred eEEEEecCCChHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 315 vvII~apTGSGKTtq~p 331 (1197)
.+.|.||.||||||.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999998664
No 390
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=65.73 E-value=2.1 Score=46.94 Aligned_cols=20 Identities=45% Similarity=0.793 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 57889999999999999755
No 391
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=65.50 E-value=2.1 Score=47.38 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 57899999999999999755
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=65.39 E-value=2.7 Score=43.98 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.7
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
+..++|+|+.||||||++-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45789999999999987754
No 393
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=65.11 E-value=3.1 Score=43.00 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=15.7
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
++.|.|+.||||||.+-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999877543
No 394
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=64.87 E-value=2.9 Score=47.06 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.1
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+..+..++|.|++|||||+.+.+++.+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 456889999999999999888887765
No 395
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.86 E-value=4.7 Score=55.00 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=27.2
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEE
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSII 350 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Ii 350 (1197)
.++++.|.||.||||||.+..++.+.. ..|..|..+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~---~~g~~~~~i 1465 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFI 1465 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEE
Confidence 368899999999999999998887744 334444333
No 396
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=64.84 E-value=2.1 Score=46.50 Aligned_cols=20 Identities=40% Similarity=0.880 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|.||.||||||.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56889999999999999755
No 397
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=64.81 E-value=4.9 Score=50.84 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=61.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeec-ccccccccCCEEE
Q 000991 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN-MAETSITINDVVF 655 (1197)
Q Consensus 577 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATn-iaEtGIdIPdV~~ 655 (1197)
+..++|.+|++.-+...++.+.... ...++.+..+||+++..++..+++....|...|||+|. .+...+.+.++.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~---~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~l 493 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESF---SKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGL 493 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHH---TCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh---hhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCce
Confidence 4689999999998888877776531 11246789999999999999888888889999999996 3445577788877
Q ss_pred EE
Q 000991 656 VI 657 (1197)
Q Consensus 656 VI 657 (1197)
||
T Consensus 494 VV 495 (780)
T 1gm5_A 494 VI 495 (780)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 398
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=64.72 E-value=2.9 Score=44.84 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq 332 (1197)
+..+..+-|.||.||||||.+-.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45677899999999999987653
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=64.64 E-value=3.6 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.7
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++|.|+.||||||.+-..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3899999999999999877543
No 400
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=64.56 E-value=3.7 Score=41.89 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=23.9
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchH
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPR 355 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPr 355 (1197)
.++.|+|+.||||||.+... +..+. .++....++..-|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L-~~~l~--~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKW-VAAAV--REGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHH--HTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHH-HHhhH--hcCCeeeEEEeCCC
Confidence 57889999999999876553 33332 23444445544443
No 401
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.49 E-value=2.7 Score=46.00 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.2
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999997653
No 402
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=64.40 E-value=2.2 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.0
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568899999999999997553
No 403
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=64.28 E-value=11 Score=43.31 Aligned_cols=20 Identities=30% Similarity=0.533 Sum_probs=16.3
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+-.++++|++|+|||+.+
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA 177 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHH
Confidence 34667899999999999644
No 404
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=64.15 E-value=2.8 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999997653
No 405
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.03 E-value=4.8 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=17.6
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
..+.+++.||+|+|||+.+-.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3578999999999999766433
No 406
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=63.81 E-value=2.7 Score=45.05 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=14.9
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
+.+++.||+||||||.+-
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999997664
No 407
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=63.46 E-value=2.4 Score=48.54 Aligned_cols=20 Identities=40% Similarity=0.863 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+..+.|.||.||||||.+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 56889999999999999754
No 408
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=62.74 E-value=2.6 Score=46.85 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||.||||||.+-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578999999999999997653
No 409
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=62.58 E-value=4.2 Score=41.60 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=17.6
Q ss_pred CCeEEEEecCCChHHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~I 334 (1197)
-..++|+|+.||||||.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHH
Confidence 3678999999999998765543
No 410
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=62.47 E-value=5.6 Score=48.26 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=21.3
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
.+...++|.|.||||||+.+--.|+..+
T Consensus 212 ~k~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 212 AKMPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp GGSCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hhCCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 3468899999999999976665555433
No 411
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=62.31 E-value=9.9 Score=47.13 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=40.6
Q ss_pred HHHHHHcCC-eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCC
Q 000991 306 LLKAISENQ-VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGE 372 (1197)
Q Consensus 306 Il~~I~~~~-vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~ 372 (1197)
+.+.+..+. ..++.|-||||||..+...+.+ . +. .++|+.|...+|.|++..+...++.
T Consensus 24 l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~-----~-~~--~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 24 LVKGIQEGKKHQTLLGATGTGKTFTVSNLIKE-----V-NK--PTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHH-----H-CC--CEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCcEEEECcCCcHHHHHHHHHHHH-----h-CC--CEEEEECCHHHHHHHHHHHHHHcCC
Confidence 334455553 4678899999999665543321 1 12 3566669999999999999888754
No 412
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=62.30 E-value=6.3 Score=45.09 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.2
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
+..+..++|.||+||||||.+.+++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999888777654
No 413
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=62.28 E-value=5.8 Score=44.71 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=22.5
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
.+ .+.|.||+||||||.+.+++.+..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 35 789999999999999999887754
No 414
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=62.14 E-value=3.7 Score=45.57 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.2
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
+..+.|+|++||||||.+-
T Consensus 31 ~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999998764
No 415
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=62.06 E-value=4.5 Score=42.29 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=18.6
Q ss_pred eEEEEecCCChHHHHHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQYILES 337 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~ 337 (1197)
..+++|+.|||||+.+...+++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999876665543
No 416
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=61.94 E-value=4 Score=46.08 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.5
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
..+..++|.||+|||||+.+.+++.+
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35678899999999999888877654
No 417
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=61.56 E-value=3 Score=45.06 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=18.0
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..++++|+.||||||.+-..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999877543
No 418
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.19 E-value=6 Score=52.52 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=44.5
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHHHHc-------cCCceEEEecchHHHHHHHHHHHHHHHhC
Q 000991 314 QVVVVSGETGCGKTTQLPQYILESETEAA-------RGAACSIICTQPRRISAMAVSERVAAERG 371 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ILe~~~~~~-------~g~~~~IivtqPrR~LA~qva~rVa~e~g 371 (1197)
...+|.|.-|||||.....-++..++..+ .-..-.|+|+.=|+.+|.++.+||.+.+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 34499999999999888887877665322 11234688888999999999999987754
No 419
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=60.90 E-value=5 Score=42.43 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=20.3
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~ 338 (1197)
.+..+++.|+.|||||||+-. +.+.+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~-l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNV-VVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHH
Confidence 467899999999999999864 33444
No 420
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=60.87 E-value=2.8 Score=48.42 Aligned_cols=20 Identities=50% Similarity=0.890 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|..+.|.||.||||||.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHH
Confidence 56889999999999999754
No 421
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=60.67 E-value=4.2 Score=42.17 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=17.0
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
+.++.|+|+.||||||++-.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 456889999999999887543
No 422
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=60.64 E-value=3.4 Score=46.90 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+..+..++|.|++|||||+.+.+++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999888877765
No 423
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=60.58 E-value=3.3 Score=47.47 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=15.6
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
....+|+|+||+|||+.+-
T Consensus 25 ~gl~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFE 43 (371)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999996543
No 424
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=60.57 E-value=4.2 Score=42.91 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.8
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..+++.|+.||||||++-..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHH
Confidence 5678999999999999998643
No 425
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=60.54 E-value=2.8 Score=47.94 Aligned_cols=20 Identities=45% Similarity=0.635 Sum_probs=17.7
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+..+.|.||.||||||.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 57899999999999999755
No 426
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=60.53 E-value=5 Score=42.53 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.0
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..+++.|+.||||||++-..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4778999999999999998653
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=60.31 E-value=4.3 Score=44.64 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=16.6
Q ss_pred CeEEEEecCCChHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~ 333 (1197)
..++++|+.||||||++-..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999987543
No 428
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=60.14 E-value=4.2 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHcCCeEEEEecCCChHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~p 331 (1197)
+..+..+.|.||+||||||.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHH
Confidence 3567899999999999998764
No 429
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=60.10 E-value=22 Score=46.80 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=23.9
Q ss_pred HHHHHHHH----HcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 303 RDALLKAI----SENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 303 q~~Il~~I----~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
.+++.+.+ ...+++.|+|+-|.||||.+.++.-+
T Consensus 133 ~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 133 VHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp HHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred HHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34455555 23467889999999999888665543
No 430
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=59.93 E-value=5.2 Score=43.01 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.0
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..+++.|+.||||||++-..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5788999999999999988643
No 431
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=59.81 E-value=7.2 Score=49.38 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=14.3
Q ss_pred CeEEEEecCCChHHHHH
Q 000991 314 QVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~ 330 (1197)
+-+++.||+|||||+.+
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 45899999999999544
No 432
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=59.77 E-value=3.9 Score=43.19 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.4
Q ss_pred CeEEEEecCCChHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~p 331 (1197)
+.+++.||.|+|||+.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp SEEEEESCGGGCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999997663
No 433
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=59.67 E-value=3.5 Score=46.97 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.5
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+..+..+.|.||+||||||.+.+++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999888776654
No 434
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=59.46 E-value=4.7 Score=46.23 Aligned_cols=18 Identities=33% Similarity=0.672 Sum_probs=15.3
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
..+|+|||||||||.+-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 788999999999987643
No 435
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=59.43 E-value=3.1 Score=47.71 Aligned_cols=20 Identities=45% Similarity=0.878 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|..+.|.||.||||||.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHH
Confidence 46889999999999999755
No 436
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=59.37 E-value=3.7 Score=44.47 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.8
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
.....++|.|+.||||||++-.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHH
Confidence 3556889999999999998853
No 437
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=59.26 E-value=3.1 Score=47.73 Aligned_cols=20 Identities=30% Similarity=0.616 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+..+.|.||.||||||.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCchHHHHH
Confidence 46889999999999999755
No 438
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=59.26 E-value=4.5 Score=43.27 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=16.8
Q ss_pred HcCCeEEEEecCCChHHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ 333 (1197)
..+..+++.|+.||||||++-..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999998653
No 439
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.14 E-value=5 Score=47.97 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHH
Q 000991 304 DALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV 366 (1197)
Q Consensus 304 ~~Il~~I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rV 366 (1197)
+.++..+..+..++|.|++|+|||+.+.+++.+.+.. .+..+.++-+. ....++..|+
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E---~s~~~l~~r~ 290 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLE---ESVEETAEDL 290 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESS---SCHHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEecc---CCHHHHHHHH
Confidence 4445456679999999999999999988888764421 13344444332 2234555555
No 440
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=58.93 E-value=2.9 Score=47.78 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|..+.|.||.||||||.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHH
Confidence 56889999999999999754
No 441
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=58.84 E-value=3.8 Score=44.74 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.6
Q ss_pred eEEEEecCCChHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 315 vvII~apTGSGKTtq~p 331 (1197)
.++|.||+||||||.+-
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 48999999999997654
No 442
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.82 E-value=5.9 Score=46.74 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.1
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
++.+++.||+|+|||+.+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4679999999999997664
No 443
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=58.70 E-value=4 Score=47.32 Aligned_cols=21 Identities=48% Similarity=0.563 Sum_probs=18.4
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..++.+.|.||+||||||.+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr 65 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLS 65 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHH
Confidence 578999999999999998653
No 444
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.44 E-value=9.3 Score=54.59 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=25.5
Q ss_pred hhcCCCHHHHHH---HHHHHHcCCeEEEEecCCChHHHHHH
Q 000991 294 RRSLPSYKERDA---LLKAISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 294 R~~LPi~~~q~~---Il~~I~~~~vvII~apTGSGKTtq~p 331 (1197)
+.-.|...+-.. +.+.+..+.-|+++||||||||+++-
T Consensus 901 ~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 901 SGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred cCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 333455444333 33445678889999999999997653
No 445
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=58.23 E-value=3.3 Score=45.35 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=17.6
Q ss_pred HHcCCeEEEEecCCChHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~p 331 (1197)
+. ++.+.|.||.||||||.+-
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHH
T ss_pred EC-CEEEEEECCCCCCHHHHHH
Confidence 35 8899999999999997553
No 446
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=58.00 E-value=5.2 Score=45.71 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.7
Q ss_pred cCCeEEEEecCCChHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~p 331 (1197)
....+++.||+|+|||+.+-
T Consensus 71 ~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 45689999999999997654
No 447
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=58.00 E-value=3.3 Score=44.63 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=16.7
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
.. +.+.|.||.||||||.+-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHH
Confidence 45 788999999999997553
No 448
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=57.91 E-value=6.3 Score=46.69 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=19.8
Q ss_pred HHHHHH--HcCCeEEEEecCCChHHHHHH
Q 000991 305 ALLKAI--SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 305 ~Il~~I--~~~~vvII~apTGSGKTtq~p 331 (1197)
.++..+ ....++++.||+|+|||+.+-
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 344444 245689999999999997664
No 449
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=57.78 E-value=3.8 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.5
Q ss_pred HHcCCeEEEEecCCChHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~p 331 (1197)
+..+.+++|+|+.||||||.+-
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar 387 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLAR 387 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHH
Confidence 3468899999999999998654
No 450
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=57.71 E-value=9.8 Score=43.71 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=57.7
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecccc----ccccc
Q 000991 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAE----TSITI 650 (1197)
Q Consensus 575 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATniaE----tGIdI 650 (1197)
...+.+||.+|++.-+..+++.+.... . .++.+..+||+.+..++....+....|...|+|+|+-.- .-+..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~---~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLA---D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHC---C-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHc---c-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 456789999999999999999988731 1 366799999999997776666666677789999996321 11344
Q ss_pred CCEEEEE
Q 000991 651 NDVVFVI 657 (1197)
Q Consensus 651 PdV~~VI 657 (1197)
.++.+||
T Consensus 138 ~~~~~iV 144 (414)
T 3oiy_A 138 KRFDFVF 144 (414)
T ss_dssp CCCSEEE
T ss_pred ccccEEE
Confidence 4555554
No 451
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=57.69 E-value=3.4 Score=47.56 Aligned_cols=20 Identities=45% Similarity=0.906 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+..+.|.||.||||||.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 56889999999999999754
No 452
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=57.66 E-value=3.4 Score=47.61 Aligned_cols=20 Identities=40% Similarity=0.898 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+..+.|.||.||||||.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHH
Confidence 57889999999999999754
No 453
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=57.29 E-value=5.2 Score=44.77 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=15.6
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
...+++.||+|+|||+.+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999996553
No 454
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=57.17 E-value=5.1 Score=43.05 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.9
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
.++.|+|+.||||||++-.
T Consensus 23 ~iI~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAK 41 (252)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3688999999999987753
No 455
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=56.83 E-value=5.3 Score=43.95 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.4
Q ss_pred CeEEEEecCCChHHHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq~I 334 (1197)
..++|+|+.||||||++-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999886543
No 456
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=56.80 E-value=7.2 Score=43.42 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..+..+.|.|++||||||.+-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456788999999999998764
No 457
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=56.62 E-value=10 Score=41.42 Aligned_cols=40 Identities=3% Similarity=0.027 Sum_probs=29.9
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecc
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQ 353 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~Iivtq 353 (1197)
..+..++|.|.+|+|||+.+.||+.+.+ .+|..|.++-+.
T Consensus 19 ~~gs~~li~g~p~~~~~~l~~qfl~~g~---~~Ge~~~~~~~~ 58 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGKDILFYILSRKL---KSDNLVGMFSIS 58 (260)
T ss_dssp TTCEEEEEECSGGGCHHHHHHHHHHHHH---HTTCEEEEEECS
T ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHHH---HCCCcEEEEEEe
Confidence 3578899999999999989999998765 245556555543
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=56.39 E-value=5.5 Score=40.84 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.7
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
++.|.|+.||||||++-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 788999999999987754
No 459
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=56.35 E-value=14 Score=41.64 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=26.3
Q ss_pred HcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRR 356 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR 356 (1197)
..+.++.++|++|+||||.+-..+-. +. ..+....|+-.-|..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~-~~--~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML-LI--REGLKVAVIAVDPSS 96 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH-HH--HTTCCEEEEEECCC-
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH-HH--hcCCeEEEEeecCCc
Confidence 35678899999999999877654322 21 234444455444543
No 460
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=56.30 E-value=5.4 Score=46.03 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=18.7
Q ss_pred HcCCeEEEEecCCChHHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~pq 332 (1197)
..++.++|.||+||||||.+-.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAA 188 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999987654
No 461
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=56.11 E-value=4.4 Score=44.44 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=14.5
Q ss_pred eEEEEecCCChHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 315 vvII~apTGSGKTtq~p 331 (1197)
-+++.||+||||||.+-
T Consensus 46 GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp EEEEESSTTSCHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 38999999999997654
No 462
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=55.96 E-value=11 Score=40.26 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=26.1
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecch
Q 000991 315 VVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQP 354 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqP 354 (1197)
++++.++.|+||||.+........ ..|....++.+-|
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~---~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL---RQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH---HCCCCEEEEEeCC
Confidence 588999999999988766555433 3455666666645
No 463
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=55.88 E-value=3.7 Score=42.21 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=17.1
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..+..+++.|++|+||||.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 46778999999999999755
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=55.57 E-value=6.6 Score=42.17 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.0
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
..-++.|.||+||||||.+-.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456899999999999987754
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=55.43 E-value=5.9 Score=42.15 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.6
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
+..++|.|..||||||++-.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~ 21 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKL 21 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 35689999999999997753
No 466
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=55.31 E-value=16 Score=43.57 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=37.8
Q ss_pred cCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHHHHHHHHHHhCCc
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~qva~rVa~e~g~~ 373 (1197)
.++...+.|-||||||..+...+ ... +. .++|+.|....|.++++.+...++..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-----~~~-~~--p~lvv~~~~~~A~~l~~~l~~~~~~~ 66 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-----ERH-AG--PVVLIAPDMQNALRLHDEISQFTDQM 66 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-----HHS-SS--CEEEEESSHHHHHHHHHHHHHTCSSC
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-----HHh-CC--CEEEEeCCHHHHHHHHHHHHhhCCCc
Confidence 46778999999999996544333 221 22 24455599999999999987766543
No 467
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=55.29 E-value=3.9 Score=49.94 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|+.+.|+||+||||||.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 46889999999999999865
No 468
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=55.26 E-value=3 Score=47.76 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.6
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|..+.|.||.||||||.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLL 48 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFM 48 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 56889999999999999755
No 469
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=54.82 E-value=4.1 Score=46.78 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=17.9
Q ss_pred HcCCeEEEEecCCChHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQL 330 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~ 330 (1197)
..|..+.|.||.||||||.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLl 71 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLI 71 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHH
Confidence 57899999999999999864
No 470
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=54.09 E-value=11 Score=44.11 Aligned_cols=30 Identities=40% Similarity=0.434 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChHHHHHH
Q 000991 302 ERDALLKAISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 302 ~q~~Il~~I~~~~vvII~apTGSGKTtq~p 331 (1197)
.++.+-........+.|.|++|+||||.+-
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFIN 87 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHH
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHH
Confidence 334444455566789999999999997553
No 471
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=53.61 E-value=3.6 Score=44.37 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=15.9
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...+++.||+|+|||+.+-.
T Consensus 44 ~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 44588999999999976543
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=53.46 E-value=7.3 Score=40.60 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=15.8
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
....+|.||+|||||+.+-
T Consensus 23 ~~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHH
Confidence 4578999999999997654
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=53.41 E-value=7.5 Score=41.19 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.7
Q ss_pred cCCeEEEEecCCChHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq 332 (1197)
.+..+.|+|+.||||||++-.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999987654
No 474
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=53.37 E-value=27 Score=35.54 Aligned_cols=76 Identities=11% Similarity=0.146 Sum_probs=50.4
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeec-----cccc-ccc
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATN-----MAET-SIT 649 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATn-----iaEt-GId 649 (1197)
....+||.+|++.-+..+++.+.... ....+..+..++|+.+..++...+. +...|+|+|. .+.. .+.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~ 143 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVS--KHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAK 143 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHT--TTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHH--hhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcC
Confidence 44589999999999888888876531 1112456788899988776655442 3467999996 1222 234
Q ss_pred cCCEEEEE
Q 000991 650 INDVVFVI 657 (1197)
Q Consensus 650 IPdV~~VI 657 (1197)
+.++.+||
T Consensus 144 ~~~~~~lV 151 (206)
T 1vec_A 144 VDHVQMIV 151 (206)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 56666654
No 475
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=53.29 E-value=4.5 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.0
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||+||||||.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999998654
No 476
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=52.88 E-value=4.4 Score=49.56 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=17.9
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|+||+||||||.+-
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999998653
No 477
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=52.70 E-value=4.2 Score=49.87 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=18.1
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|+||+||||||.+-
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999998653
No 478
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=52.36 E-value=11 Score=45.15 Aligned_cols=27 Identities=22% Similarity=0.569 Sum_probs=22.7
Q ss_pred HHcCCeEEEEecCCChHHHHHHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLPQYILE 336 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~pq~ILe 336 (1197)
+..+..++|.|++||||||.+-+++-.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999888776643
No 479
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=52.21 E-value=5.4 Score=45.05 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=15.7
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
....+|+||+|||||+.+-
T Consensus 23 ~~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578899999999997654
No 480
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=51.85 E-value=5.9 Score=48.32 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.3
Q ss_pred HcCCeEEEEecCCChHHHHHH
Q 000991 311 SENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 311 ~~~~vvII~apTGSGKTtq~p 331 (1197)
..|+.+.|.||+||||||.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999998654
No 481
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=51.79 E-value=7.3 Score=49.10 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=20.3
Q ss_pred HHHHHHHH--cCCeEEEEecCCChHHHHHH
Q 000991 304 DALLKAIS--ENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 304 ~~Il~~I~--~~~vvII~apTGSGKTtq~p 331 (1197)
+.++..+. ...++++.||+|+|||+.+-
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 34445553 35689999999999997654
No 482
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=51.76 E-value=19 Score=37.30 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=51.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEeecc-----c-cccccc
Q 000991 577 PGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNM-----A-ETSITI 650 (1197)
Q Consensus 577 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVATni-----a-EtGIdI 650 (1197)
...+||.+|+++-+..+++.+.... ....+..+..++|+.+..++...+. .+...|+|+|.- + ...+++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFS--KYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHT--TTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHH--hhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCc
Confidence 3489999999999988888776531 1112466888999998777665543 244589999952 1 233566
Q ss_pred CCEEEEE
Q 000991 651 NDVVFVI 657 (1197)
Q Consensus 651 PdV~~VI 657 (1197)
.++.+||
T Consensus 157 ~~~~~lV 163 (220)
T 1t6n_A 157 KHIKHFI 163 (220)
T ss_dssp TTCCEEE
T ss_pred ccCCEEE
Confidence 7777655
No 483
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=51.69 E-value=6.2 Score=43.25 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=14.7
Q ss_pred eEEEEecCCChHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq 332 (1197)
++.|.||+||||||.+-.
T Consensus 4 ~v~lvG~nGaGKSTLln~ 21 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNT 21 (270)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999976543
No 484
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=51.50 E-value=7.8 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=16.4
Q ss_pred EEEEecCCChHHHHHHHHH
Q 000991 316 VVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 316 vII~apTGSGKTtq~pq~I 334 (1197)
++|.|++|||||+.+.++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999998877654
No 485
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=51.47 E-value=6.1 Score=47.79 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=17.3
Q ss_pred cCCeEEEEecCCChHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~p 331 (1197)
.+..+++.||+||||||.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47899999999999997654
No 486
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=51.23 E-value=8.5 Score=37.09 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=15.3
Q ss_pred eEEEEecCCChHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~ 333 (1197)
.+++.|++|+|||+.+-.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999765443
No 487
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=51.15 E-value=8.2 Score=45.44 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.0
Q ss_pred CCeEEEEecCCChHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~p 331 (1197)
...+++.||+|||||+.+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4679999999999997654
No 488
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=51.04 E-value=8.3 Score=37.24 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=15.8
Q ss_pred eEEEEecCCChHHHHHHHHH
Q 000991 315 VVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 315 vvII~apTGSGKTtq~pq~I 334 (1197)
.+++.|++|+|||+.+-.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999997655443
No 489
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=50.96 E-value=5.7 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=14.2
Q ss_pred CCeEEEEecCCChHHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq~ 333 (1197)
...+.|+|+.||||||.+-.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp SCEEEEESCC---CCTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457889999999999877543
No 490
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.75 E-value=10 Score=54.70 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=38.8
Q ss_pred HhhcCCCHHHHHHHHHH---HHcCCeEEEEecCCChHHHHHHHHHHHHHHHHccCCceEEEecchHHHHHHH
Q 000991 293 FRRSLPSYKERDALLKA---ISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMA 361 (1197)
Q Consensus 293 ~R~~LPi~~~q~~Il~~---I~~~~vvII~apTGSGKTtq~pq~ILe~~~~~~~g~~~~IivtqPrR~LA~q 361 (1197)
.+.--|...+-..+++. +..+.-++++||||||||++.- +|..++..-.+....+.++-|--+...|
T Consensus 883 ~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~~l~~~~~~~~~iNPKait~~e 952 (3245)
T 3vkg_A 883 QRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIEQVDNIKSEAHVMDPKAITKDQ 952 (3245)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHTTTTTCEEEEEEECTTTSCHHH
T ss_pred HcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHHHhhCCCceEEEECCCCCchhh
Confidence 34444666655555544 3457789999999999997663 3333333222334455555576444333
No 491
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=50.44 E-value=19 Score=47.59 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=62.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHcCCCCCCCCceEEEeccCCCCHHHHHHhcCCCCCCceEEEEee-cccccccccCCEE
Q 000991 576 RPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLAT-NMAETSITINDVV 654 (1197)
Q Consensus 576 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~I~~lHs~L~~~er~~v~~~f~~G~~kVLVAT-niaEtGIdIPdV~ 654 (1197)
.+..+||.+|+..-+...++.+... ++ ..++.+..+++..+..++..+++....|...|||+| ..+...+.+.++.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~--~~-~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~ 727 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDR--FA-NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 727 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHH--ST-TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHH--hh-cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccc
Confidence 4568999999999888888888753 11 124568889999999999988888888999999999 4555668888888
Q ss_pred EEE
Q 000991 655 FVI 657 (1197)
Q Consensus 655 ~VI 657 (1197)
+||
T Consensus 728 lvI 730 (1151)
T 2eyq_A 728 LLI 730 (1151)
T ss_dssp EEE
T ss_pred eEE
Confidence 866
No 492
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=50.40 E-value=7.9 Score=45.13 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.1
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
...++++|+.||||||.+-.
T Consensus 258 ~~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 56899999999999987754
No 493
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=50.30 E-value=7.8 Score=40.58 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=16.6
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
+.-+++.|.-|||||||+-.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~ 21 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINE 21 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 34678899999999999854
No 494
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=50.15 E-value=7.1 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=18.8
Q ss_pred HHcCCeEEEEecCCChHHHHHH
Q 000991 310 ISENQVVVVSGETGCGKTTQLP 331 (1197)
Q Consensus 310 I~~~~vvII~apTGSGKTtq~p 331 (1197)
+..|..+.|.||+||||||.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHH
Confidence 3579999999999999997653
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=49.96 E-value=8.5 Score=39.51 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.1
Q ss_pred cCCeEEEEecCCChHHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQYI 334 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~I 334 (1197)
.+.-++++|+.|+||||.+..++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 46679999999999998876654
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=49.76 E-value=8.5 Score=39.99 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.5
Q ss_pred CCeEEEEecCCChHHHHHHH
Q 000991 313 NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 313 ~~vvII~apTGSGKTtq~pq 332 (1197)
+..+.|+|+.||||||++-.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~ 22 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKR 22 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45789999999999987643
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=49.60 E-value=8.2 Score=41.09 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.2
Q ss_pred cCCeEEEEecCCChHHHHHHHH
Q 000991 312 ENQVVVVSGETGCGKTTQLPQY 333 (1197)
Q Consensus 312 ~~~vvII~apTGSGKTtq~pq~ 333 (1197)
.+..+++.|+.||||||++-..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l 41 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLL 41 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4668899999999999987543
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=49.52 E-value=6.7 Score=43.91 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=15.8
Q ss_pred CeEEEEecCCChHHHHHHH
Q 000991 314 QVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 314 ~vvII~apTGSGKTtq~pq 332 (1197)
++++|+|+.||||||.+-.
T Consensus 5 ~v~~i~G~~GaGKTTll~~ 23 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRH 23 (318)
T ss_dssp EEEEEEESSSSSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHH
Confidence 4789999999999986543
No 499
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=49.02 E-value=7.6 Score=44.28 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=18.7
Q ss_pred HHc--CCeEEEEecCCChHHHHHHH
Q 000991 310 ISE--NQVVVVSGETGCGKTTQLPQ 332 (1197)
Q Consensus 310 I~~--~~vvII~apTGSGKTtq~pq 332 (1197)
+.. ++.+.|.|++||||||.+-.
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~ 189 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNK 189 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHH
Confidence 456 78899999999999986643
No 500
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=48.81 E-value=8.3 Score=40.04 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHH
Q 000991 316 VVVSGETGCGKTTQLPQYILESE 338 (1197)
Q Consensus 316 vII~apTGSGKTtq~pq~ILe~~ 338 (1197)
+++.|.-|||||||+-. +.+.+
T Consensus 3 I~~EG~DGsGKsTq~~~-L~~~L 24 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQL-LAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 57899999999999864 34444
Done!