Query 000992
Match_columns 1196
No_of_seqs 482 out of 1685
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 12:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1920 IkappaB kinase complex 100.0 1E-195 2E-200 1746.5 88.6 1083 1-1185 1-1133(1265)
2 PF04762 IKI3: IKI3 family; I 100.0 4E-182 8E-187 1717.6 97.7 871 1-958 1-928 (928)
3 COG5290 IkappaB kinase complex 100.0 2E-158 4E-163 1355.1 51.9 1060 1-1184 1-1118(1243)
4 KOG1538 Uncharacterized conser 100.0 5.2E-36 1.1E-40 341.0 39.8 756 76-1111 13-805 (1081)
5 KOG2041 WD40 repeat protein [G 100.0 3.7E-31 8E-36 303.4 60.8 819 15-1108 10-909 (1189)
6 KOG0271 Notchless-like WD40 re 100.0 1.1E-32 2.3E-37 299.6 25.4 319 22-421 117-479 (480)
7 KOG0271 Notchless-like WD40 re 100.0 1.6E-31 3.6E-36 290.4 27.9 314 75-468 115-472 (480)
8 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-29 8.1E-34 276.0 23.2 278 76-421 176-458 (459)
9 KOG0318 WD40 repeat stress pro 100.0 1.8E-24 3.9E-29 244.1 47.1 450 22-552 20-559 (603)
10 KOG0273 Beta-transducin family 100.0 2.3E-26 5.1E-31 256.6 30.1 339 22-478 180-522 (524)
11 KOG0318 WD40 repeat stress pro 100.0 8.6E-25 1.9E-29 246.7 41.2 391 22-478 105-601 (603)
12 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-27 8.8E-32 259.9 22.0 264 22-333 177-444 (459)
13 KOG0645 WD40 repeat protein [G 100.0 1E-25 2.2E-30 236.9 31.0 293 111-478 9-310 (312)
14 KOG0291 WD40-repeat-containing 100.0 4.6E-23 9.9E-28 240.5 55.4 448 25-554 19-551 (893)
15 KOG0276 Vesicle coat complex C 99.9 1.4E-23 3E-28 240.2 47.4 235 75-346 13-253 (794)
16 KOG0306 WD40-repeat-containing 99.9 1.6E-23 3.5E-28 244.2 45.1 433 22-552 23-621 (888)
17 KOG0645 WD40 repeat protein [G 99.9 5.8E-25 1.2E-29 231.3 29.5 282 76-423 15-311 (312)
18 KOG0291 WD40-repeat-containing 99.9 4.5E-23 9.7E-28 240.6 48.1 473 22-553 98-612 (893)
19 KOG0279 G protein beta subunit 99.9 1.4E-24 3E-29 229.3 31.1 281 22-346 17-309 (315)
20 KOG1538 Uncharacterized conser 99.9 4.7E-23 1E-27 235.9 45.8 779 22-1090 14-843 (1081)
21 KOG0284 Polyadenylation factor 99.9 5.7E-26 1.2E-30 249.7 17.5 283 76-424 97-381 (464)
22 KOG0279 G protein beta subunit 99.9 8.9E-24 1.9E-28 223.3 31.2 298 111-478 10-312 (315)
23 KOG0319 WD40-repeat-containing 99.9 5.8E-23 1.3E-27 240.0 39.8 440 22-551 64-617 (775)
24 KOG0319 WD40-repeat-containing 99.9 2.9E-23 6.4E-28 242.5 36.1 432 26-553 25-577 (775)
25 KOG0973 Histone transcription 99.9 7.6E-24 1.7E-28 257.7 28.6 317 76-424 14-356 (942)
26 KOG0306 WD40-repeat-containing 99.9 1.1E-22 2.5E-27 237.2 36.5 376 22-478 109-663 (888)
27 KOG0263 Transcription initiati 99.9 2.5E-24 5.4E-29 254.4 22.7 245 22-306 380-650 (707)
28 KOG0276 Vesicle coat complex C 99.9 3.3E-20 7.2E-25 212.8 55.5 373 22-476 15-414 (794)
29 KOG0286 G-protein beta subunit 99.9 1.3E-22 2.7E-27 215.6 33.2 284 67-421 51-343 (343)
30 KOG0292 Vesicle coat complex C 99.9 2.4E-21 5.1E-26 228.7 46.8 294 75-434 9-332 (1202)
31 KOG1524 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 220.6 40.3 231 22-294 16-278 (737)
32 cd00200 WD40 WD40 domain, foun 99.9 6.9E-22 1.5E-26 217.6 36.5 276 76-421 10-289 (289)
33 KOG0266 WD40 repeat-containing 99.9 7.6E-23 1.7E-27 246.9 30.6 287 76-423 160-454 (456)
34 KOG0263 Transcription initiati 99.9 1.7E-23 3.8E-28 247.2 23.1 238 75-424 378-650 (707)
35 PLN00181 protein SPA1-RELATED; 99.9 8.4E-22 1.8E-26 254.2 39.0 292 75-422 483-792 (793)
36 KOG0273 Beta-transducin family 99.9 1.6E-21 3.5E-26 218.2 31.5 333 110-550 173-520 (524)
37 KOG0266 WD40 repeat-containing 99.9 1.5E-21 3.4E-26 235.6 32.6 293 111-478 154-453 (456)
38 cd00200 WD40 WD40 domain, foun 99.9 1E-20 2.2E-25 208.3 35.2 273 22-345 11-286 (289)
39 KOG0286 G-protein beta subunit 99.9 7.1E-21 1.5E-25 202.4 31.9 284 111-476 50-342 (343)
40 KOG0293 WD40 repeat-containing 99.9 7.9E-22 1.7E-26 217.0 23.0 284 75-424 224-514 (519)
41 KOG0973 Histone transcription 99.9 2.7E-21 5.9E-26 235.6 27.4 305 111-479 8-355 (942)
42 KOG0295 WD40 repeat-containing 99.9 3.1E-21 6.7E-26 210.3 24.8 279 76-422 109-405 (406)
43 PLN00181 protein SPA1-RELATED; 99.9 4.3E-20 9.2E-25 238.5 37.5 283 22-348 485-791 (793)
44 KOG0292 Vesicle coat complex C 99.9 7.7E-18 1.7E-22 199.4 52.2 347 22-423 11-397 (1202)
45 KOG0295 WD40 repeat-containing 99.9 3.8E-21 8.2E-26 209.6 21.8 309 98-476 90-403 (406)
46 KOG1920 IkappaB kinase complex 99.9 2.5E-17 5.4E-22 202.3 53.2 316 808-1139 656-1038(1265)
47 KOG0293 WD40 repeat-containing 99.9 1E-20 2.2E-25 208.4 21.2 293 109-478 217-512 (519)
48 KOG0284 Polyadenylation factor 99.9 1.6E-21 3.4E-26 214.9 14.8 269 22-339 98-369 (464)
49 PTZ00421 coronin; Provisional 99.9 2.3E-19 4.9E-24 216.8 34.3 225 75-330 75-314 (493)
50 KOG1063 RNA polymerase II elon 99.9 2.9E-18 6.2E-23 199.6 41.2 450 26-553 20-648 (764)
51 KOG0315 G-protein beta subunit 99.9 1.1E-19 2.3E-24 189.6 24.5 243 22-308 42-291 (311)
52 KOG0313 Microtubule binding pr 99.9 1.6E-19 3.5E-24 197.8 26.8 286 72-423 102-418 (423)
53 KOG0265 U5 snRNP-specific prot 99.8 7.5E-19 1.6E-23 187.8 26.9 279 75-421 47-336 (338)
54 PTZ00421 coronin; Provisional 99.8 2E-18 4.3E-23 208.6 33.6 244 78-346 23-286 (493)
55 KOG0315 G-protein beta subunit 99.8 2.2E-18 4.8E-23 179.8 28.5 278 88-433 11-298 (311)
56 KOG0305 Anaphase promoting com 99.8 6.4E-19 1.4E-23 206.3 27.4 269 27-345 184-456 (484)
57 KOG1407 WD40 repeat protein [F 99.8 1.1E-18 2.4E-23 183.2 26.2 266 22-339 22-291 (313)
58 PTZ00420 coronin; Provisional 99.8 4.4E-18 9.6E-23 206.7 35.2 226 75-332 74-319 (568)
59 KOG2096 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 186.1 26.9 293 67-467 82-393 (420)
60 KOG0641 WD40 repeat protein [G 99.8 5.4E-18 1.2E-22 173.9 29.4 290 75-423 32-349 (350)
61 KOG0772 Uncharacterized conser 99.8 2.5E-19 5.5E-24 201.9 21.4 300 76-424 168-488 (641)
62 KOG2048 WD40 repeat protein [G 99.8 1.4E-16 3.1E-21 185.7 43.8 446 22-553 27-548 (691)
63 KOG0265 U5 snRNP-specific prot 99.8 3.1E-18 6.8E-23 183.1 26.9 285 110-468 41-329 (338)
64 KOG1063 RNA polymerase II elon 99.8 4.5E-18 9.8E-23 198.0 30.2 368 21-423 268-763 (764)
65 KOG0772 Uncharacterized conser 99.8 9.8E-19 2.1E-23 197.3 23.6 282 22-346 169-483 (641)
66 KOG0296 Angio-associated migra 99.8 1.4E-17 3.1E-22 182.0 31.7 321 22-423 66-398 (399)
67 KOG0296 Angio-associated migra 99.8 1.3E-17 2.9E-22 182.3 31.1 321 75-477 64-396 (399)
68 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.1E-17 8.9E-22 184.5 36.4 270 88-428 2-284 (300)
69 KOG0275 Conserved WD40 repeat- 99.8 6.5E-20 1.4E-24 195.9 12.5 270 116-421 213-507 (508)
70 KOG0305 Anaphase promoting com 99.8 2.6E-18 5.7E-23 201.1 27.1 277 77-424 179-462 (484)
71 PTZ00420 coronin; Provisional 99.8 1.2E-17 2.6E-22 203.0 33.5 231 93-348 50-291 (568)
72 KOG0282 mRNA splicing factor [ 99.8 2.5E-19 5.4E-24 201.7 15.8 281 75-421 214-503 (503)
73 KOG1274 WD40 repeat protein [G 99.8 6.9E-18 1.5E-22 202.1 28.6 268 22-342 15-292 (933)
74 KOG0285 Pleiotropic regulator 99.8 1.4E-17 3E-22 181.1 26.9 282 75-425 151-441 (460)
75 KOG0278 Serine/threonine kinas 99.8 9.3E-19 2E-23 182.3 17.1 278 76-424 15-298 (334)
76 KOG1407 WD40 repeat protein [F 99.8 1.1E-17 2.3E-22 175.9 24.6 239 22-306 66-312 (313)
77 KOG2106 Uncharacterized conser 99.8 2.2E-15 4.8E-20 170.1 42.7 413 28-550 73-518 (626)
78 KOG0283 WD40 repeat-containing 99.8 2.9E-17 6.4E-22 196.5 27.4 265 111-425 262-578 (712)
79 KOG0282 mRNA splicing factor [ 99.8 3.3E-18 7.2E-23 192.7 16.9 278 22-346 216-501 (503)
80 KOG2048 WD40 repeat protein [G 99.8 1.8E-15 3.9E-20 176.6 39.6 368 14-425 62-507 (691)
81 KOG1332 Vesicle coat complex C 99.8 1.1E-17 2.3E-22 174.4 18.7 250 22-310 13-292 (299)
82 KOG2106 Uncharacterized conser 99.8 2.4E-15 5.1E-20 169.9 38.0 393 22-477 202-624 (626)
83 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.5E-15 3.3E-20 171.7 36.7 256 33-338 2-266 (300)
84 KOG0275 Conserved WD40 repeat- 99.8 1.4E-17 3.1E-22 178.1 18.5 281 22-342 215-501 (508)
85 KOG1332 Vesicle coat complex C 99.7 2.3E-17 4.9E-22 172.0 16.6 254 113-424 8-287 (299)
86 KOG1539 WD repeat protein [Gen 99.7 4E-15 8.6E-20 176.8 37.4 384 33-477 173-646 (910)
87 PF04762 IKI3: IKI3 family; I 99.7 4.6E-14 1E-18 181.5 49.6 365 76-552 22-455 (928)
88 KOG3616 Selective LIM binding 99.7 7E-17 1.5E-21 187.0 19.2 254 879-1139 648-920 (1636)
89 KOG0299 U3 snoRNP-associated p 99.7 9E-16 1.9E-20 172.4 26.9 301 109-466 135-444 (479)
90 KOG0640 mRNA cleavage stimulat 99.7 2.3E-16 5.1E-21 168.7 20.8 281 76-423 113-426 (430)
91 KOG0310 Conserved WD40 repeat- 99.7 8.6E-16 1.9E-20 173.8 25.4 279 76-422 27-308 (487)
92 KOG0643 Translation initiation 99.7 3.1E-15 6.6E-20 158.0 27.4 295 76-423 11-317 (327)
93 KOG0277 Peroxisomal targeting 99.7 5.9E-16 1.3E-20 162.3 21.6 281 77-422 10-308 (311)
94 KOG1539 WD repeat protein [Gen 99.7 5.7E-14 1.2E-18 167.1 40.8 394 75-551 159-646 (910)
95 KOG0313 Microtubule binding pr 99.7 1.2E-15 2.6E-20 167.8 24.5 266 27-330 110-400 (423)
96 KOG3616 Selective LIM binding 99.7 9.5E-15 2.1E-19 169.6 32.2 158 947-1109 664-823 (1636)
97 KOG1009 Chromatin assembly com 99.7 1.5E-15 3.3E-20 168.3 24.0 319 75-424 13-373 (434)
98 KOG0288 WD40 repeat protein Ti 99.7 4.3E-16 9.3E-21 172.7 16.6 277 75-421 175-459 (459)
99 KOG0316 Conserved WD40 repeat- 99.7 1.2E-14 2.5E-19 151.0 26.0 240 172-478 16-256 (307)
100 KOG1446 Histone H3 (Lys4) meth 99.7 9.2E-14 2E-18 150.8 33.9 281 75-423 14-303 (311)
101 KOG0285 Pleiotropic regulator 99.7 4.8E-15 1E-19 161.5 23.3 240 22-311 153-395 (460)
102 KOG0289 mRNA splicing factor [ 99.7 9.4E-15 2E-19 162.8 26.0 250 23-317 222-474 (506)
103 KOG1408 WD40 repeat protein [F 99.7 2E-14 4.4E-19 167.2 28.7 327 22-424 326-714 (1080)
104 KOG0310 Conserved WD40 repeat- 99.7 9.3E-15 2E-19 165.6 25.1 232 75-344 68-303 (487)
105 KOG0300 WD40 repeat-containing 99.7 5.7E-15 1.2E-19 158.2 22.1 304 75-425 148-478 (481)
106 KOG0283 WD40 repeat-containing 99.7 2.6E-15 5.7E-20 180.0 21.7 227 75-339 267-565 (712)
107 KOG0307 Vesicle coat complex C 99.7 8.4E-15 1.8E-19 180.1 26.3 291 120-478 10-326 (1049)
108 KOG2096 WD40 repeat protein [G 99.7 1.2E-14 2.5E-19 156.6 23.9 261 112-478 82-359 (420)
109 KOG1274 WD40 repeat protein [G 99.7 1.7E-14 3.6E-19 173.5 27.6 273 76-421 14-298 (933)
110 KOG3617 WD40 and TPR repeat-co 99.7 1.2E-12 2.7E-17 154.5 42.2 113 177-305 19-131 (1416)
111 KOG0647 mRNA export protein (c 99.7 2.4E-14 5.3E-19 153.7 25.6 285 108-466 19-312 (347)
112 KOG0650 WD40 repeat nucleolar 99.7 6.9E-15 1.5E-19 169.1 22.4 308 75-421 400-733 (733)
113 KOG0281 Beta-TrCP (transducin 99.7 1.4E-15 3.1E-20 164.6 15.5 275 22-376 199-478 (499)
114 KOG0643 Translation initiation 99.7 4.4E-14 9.5E-19 149.3 26.1 295 111-478 6-316 (327)
115 KOG0647 mRNA export protein (c 99.6 1.8E-14 3.9E-19 154.6 23.2 246 21-292 28-313 (347)
116 PRK01742 tolB translocation pr 99.6 4.9E-15 1.1E-19 178.2 21.5 218 76-330 204-426 (429)
117 KOG0288 WD40 repeat protein Ti 99.6 3.6E-15 7.9E-20 165.5 17.8 264 22-333 177-445 (459)
118 KOG0308 Conserved WD40 repeat- 99.6 6.7E-15 1.5E-19 170.8 20.7 251 27-307 31-287 (735)
119 KOG0281 Beta-TrCP (transducin 99.6 1.4E-15 3E-20 164.6 14.2 272 75-425 197-479 (499)
120 KOG0316 Conserved WD40 repeat- 99.6 7.4E-14 1.6E-18 145.1 26.0 267 22-342 19-292 (307)
121 KOG0277 Peroxisomal targeting 99.6 7.2E-15 1.6E-19 154.3 18.5 236 75-344 60-303 (311)
122 KOG0268 Sof1-like rRNA process 99.6 2.9E-15 6.2E-20 163.7 15.6 273 75-426 66-348 (433)
123 KOG2055 WD40 repeat protein [G 99.6 5.3E-14 1.2E-18 158.1 25.6 289 75-423 213-512 (514)
124 KOG0301 Phospholipase A2-activ 99.6 3.7E-14 8.1E-19 165.9 25.2 255 33-346 26-284 (745)
125 KOG2055 WD40 repeat protein [G 99.6 3.7E-14 8E-19 159.4 24.0 277 22-348 215-510 (514)
126 KOG0264 Nucleosome remodeling 99.6 1.2E-14 2.6E-19 163.7 20.1 263 74-424 123-405 (422)
127 KOG1446 Histone H3 (Lys4) meth 99.6 3.2E-13 6.9E-18 146.6 30.0 286 116-479 14-303 (311)
128 KOG0289 mRNA splicing factor [ 99.6 5.7E-14 1.2E-18 156.7 24.5 255 2-302 241-503 (506)
129 KOG2445 Nuclear pore complex c 99.6 7.8E-14 1.7E-18 150.1 24.1 259 22-310 15-324 (361)
130 KOG0308 Conserved WD40 repeat- 99.6 1.1E-14 2.5E-19 168.9 18.5 273 85-423 35-327 (735)
131 KOG0278 Serine/threonine kinas 99.6 1.1E-14 2.3E-19 152.4 15.8 285 111-479 10-297 (334)
132 COG2319 FOG: WD40 repeat [Gene 99.6 2.6E-11 5.7E-16 140.1 46.2 367 22-478 67-441 (466)
133 KOG0641 WD40 repeat protein [G 99.6 1.1E-12 2.3E-17 135.3 29.3 270 22-331 34-331 (350)
134 PRK03629 tolB translocation pr 99.6 1.8E-13 3.8E-18 164.6 27.6 223 76-329 199-427 (429)
135 PRK05137 tolB translocation pr 99.6 2E-13 4.4E-18 164.6 27.5 203 76-306 202-413 (435)
136 KOG1408 WD40 repeat protein [F 99.6 1.1E-12 2.5E-17 152.9 31.9 388 26-479 264-713 (1080)
137 KOG0299 U3 snoRNP-associated p 99.6 2.8E-13 6.1E-18 152.6 25.4 278 22-339 144-444 (479)
138 KOG0639 Transducin-like enhanc 99.6 5.7E-14 1.2E-18 158.3 19.7 241 20-305 419-663 (705)
139 KOG4497 Uncharacterized conser 99.6 1.5E-13 3.2E-18 148.5 21.3 309 22-415 50-424 (447)
140 KOG2445 Nuclear pore complex c 99.6 4.7E-13 1E-17 144.2 24.6 266 115-423 12-318 (361)
141 KOG3617 WD40 and TPR repeat-co 99.6 7.8E-11 1.7E-15 139.7 43.8 189 938-1135 945-1159(1416)
142 KOG0294 WD40 repeat-containing 99.6 3.6E-13 7.8E-18 145.5 22.4 241 112-424 39-282 (362)
143 KOG2919 Guanine nucleotide-bin 99.6 3.7E-13 8E-18 145.5 22.2 285 119-467 52-360 (406)
144 KOG4283 Transcription-coupled 99.5 8E-13 1.7E-17 141.2 23.6 310 22-422 45-364 (397)
145 KOG1273 WD40 repeat protein [G 99.5 2.9E-13 6.4E-18 145.8 20.0 240 77-333 25-307 (405)
146 KOG0274 Cdc4 and related F-box 99.5 8.6E-13 1.9E-17 160.3 26.2 233 23-308 211-444 (537)
147 KOG0268 Sof1-like rRNA process 99.5 1E-13 2.3E-18 151.7 15.3 278 114-478 64-344 (433)
148 PF08662 eIF2A: Eukaryotic tra 99.5 5.6E-13 1.2E-17 142.8 20.8 162 78-263 8-184 (194)
149 PRK02889 tolB translocation pr 99.5 7E-13 1.5E-17 159.5 24.0 225 76-329 196-424 (427)
150 KOG1036 Mitotic spindle checkp 99.5 6.2E-12 1.3E-16 136.0 27.8 283 73-467 11-294 (323)
151 PRK04922 tolB translocation pr 99.5 7.7E-13 1.7E-17 159.5 23.4 223 76-329 204-432 (433)
152 PRK05137 tolB translocation pr 99.5 3.5E-12 7.7E-17 153.9 29.2 205 98-333 183-390 (435)
153 KOG0274 Cdc4 and related F-box 99.5 3.4E-12 7.3E-17 155.2 28.5 272 76-428 209-487 (537)
154 KOG4497 Uncharacterized conser 99.5 2.6E-13 5.7E-18 146.7 16.7 322 121-551 13-389 (447)
155 COG2319 FOG: WD40 repeat [Gene 99.5 4.6E-10 1E-14 129.6 45.0 286 75-425 65-361 (466)
156 KOG2041 WD40 repeat protein [G 99.5 2.2E-08 4.8E-13 117.6 57.6 251 22-313 73-377 (1189)
157 PRK03629 tolB translocation pr 99.5 1.2E-12 2.6E-17 157.5 23.9 221 22-282 200-427 (429)
158 PRK11028 6-phosphogluconolacto 99.5 2.4E-11 5.1E-16 141.3 33.9 276 91-424 6-305 (330)
159 KOG0301 Phospholipase A2-activ 99.5 1.2E-12 2.7E-17 153.4 22.8 228 26-309 64-292 (745)
160 PRK01742 tolB translocation pr 99.5 7.6E-13 1.6E-17 159.4 21.7 215 22-283 205-426 (429)
161 KOG0294 WD40 repeat-containing 99.5 2.1E-12 4.7E-17 139.6 22.4 231 22-306 45-282 (362)
162 PRK11028 6-phosphogluconolacto 99.5 4.5E-11 9.7E-16 138.9 35.3 274 33-345 2-299 (330)
163 KOG1036 Mitotic spindle checkp 99.5 2.7E-12 5.9E-17 138.8 22.9 268 22-339 15-293 (323)
164 KOG0267 Microtubule severing p 99.5 4.8E-14 1E-18 165.4 10.3 226 25-294 33-260 (825)
165 KOG0264 Nucleosome remodeling 99.5 1.7E-12 3.8E-17 146.5 21.3 238 33-306 138-405 (422)
166 KOG0269 WD40 repeat-containing 99.5 7.5E-13 1.6E-17 156.7 18.8 289 77-423 41-340 (839)
167 KOG0640 mRNA cleavage stimulat 99.5 1.6E-12 3.5E-17 139.6 19.4 242 22-305 174-426 (430)
168 KOG0650 WD40 repeat nucleolar 99.5 4E-12 8.6E-17 146.7 23.8 279 168-476 395-732 (733)
169 KOG0639 Transducin-like enhanc 99.5 1.6E-12 3.5E-17 146.8 19.6 276 75-422 419-703 (705)
170 PRK01029 tolB translocation pr 99.5 5.5E-12 1.2E-16 151.4 25.3 233 77-330 186-425 (428)
171 KOG0269 WD40 repeat-containing 99.5 1.1E-12 2.4E-17 155.3 18.5 281 23-345 42-335 (839)
172 KOG0646 WD40 repeat protein [G 99.5 3E-12 6.5E-17 144.7 20.2 209 75-306 81-308 (476)
173 PRK04922 tolB translocation pr 99.4 4.7E-12 1E-16 152.8 22.6 219 22-282 205-432 (433)
174 PF08662 eIF2A: Eukaryotic tra 99.4 6.7E-12 1.4E-16 134.5 20.7 118 174-306 60-180 (194)
175 KOG0267 Microtubule severing p 99.4 2.3E-13 5.1E-18 159.7 9.8 216 77-332 30-251 (825)
176 KOG1009 Chromatin assembly com 99.4 1.4E-11 3E-16 137.3 23.1 284 22-343 15-365 (434)
177 PRK02889 tolB translocation pr 99.4 7E-12 1.5E-16 150.9 22.3 221 22-282 197-424 (427)
178 PRK00178 tolB translocation pr 99.4 2.8E-11 6E-16 146.0 27.2 203 76-306 199-407 (430)
179 PRK04792 tolB translocation pr 99.4 1E-11 2.3E-16 150.1 23.5 223 76-329 218-446 (448)
180 KOG4378 Nuclear protein COP1 [ 99.4 1.1E-11 2.4E-16 140.2 21.6 297 90-462 5-308 (673)
181 KOG4283 Transcription-coupled 99.4 4.3E-11 9.4E-16 128.2 24.5 228 114-425 41-278 (397)
182 KOG1273 WD40 repeat protein [G 99.4 3E-11 6.6E-16 130.5 23.2 248 22-305 25-322 (405)
183 KOG1524 WD40 repeat-containing 99.4 3.6E-12 7.9E-17 145.1 16.8 260 77-421 16-284 (737)
184 KOG1445 Tumor-specific antigen 99.4 2E-12 4.4E-17 149.0 15.0 244 84-349 588-843 (1012)
185 KOG0307 Vesicle coat complex C 99.4 2.1E-12 4.5E-17 159.3 13.9 251 22-310 66-332 (1049)
186 TIGR02800 propeller_TolB tol-p 99.4 5.3E-11 1.2E-15 142.7 25.7 201 76-304 190-396 (417)
187 KOG0300 WD40 repeat-containing 99.4 4.3E-11 9.3E-16 128.9 20.3 257 171-461 146-458 (481)
188 KOG1963 WD40 repeat protein [G 99.4 1E-09 2.2E-14 132.9 34.1 334 24-425 164-540 (792)
189 KOG2139 WD40 repeat protein [G 99.4 6.2E-11 1.3E-15 130.2 21.5 201 76-294 99-302 (445)
190 KOG0302 Ribosome Assembly prot 99.4 2.6E-11 5.6E-16 133.9 18.6 198 76-305 152-378 (440)
191 KOG2110 Uncharacterized conser 99.3 4.2E-10 9E-15 124.6 26.6 238 22-306 7-249 (391)
192 KOG2919 Guanine nucleotide-bin 99.3 1.6E-10 3.4E-15 125.5 22.7 278 22-333 51-354 (406)
193 KOG1007 WD repeat protein TSSC 99.3 3.9E-11 8.5E-16 128.3 17.8 293 95-423 38-361 (370)
194 PRK01029 tolB translocation pr 99.3 2.1E-10 4.6E-15 137.8 26.5 210 97-333 165-384 (428)
195 KOG0771 Prolactin regulatory e 99.3 1.8E-11 3.9E-16 137.5 15.5 197 79-304 148-353 (398)
196 KOG1523 Actin-related protein 99.3 1.4E-10 3.1E-15 126.0 21.3 249 174-468 11-270 (361)
197 KOG1034 Transcriptional repres 99.3 1.6E-10 3.6E-15 125.7 21.5 313 114-477 36-381 (385)
198 PRK04792 tolB translocation pr 99.3 1.1E-10 2.5E-15 141.1 21.8 219 22-282 219-446 (448)
199 KOG0303 Actin-binding protein 99.3 1.3E-10 2.9E-15 128.9 19.6 214 111-349 76-293 (472)
200 TIGR02800 propeller_TolB tol-p 99.3 6.7E-10 1.5E-14 133.2 27.5 208 98-336 171-381 (417)
201 KOG0302 Ribosome Assembly prot 99.3 1.5E-10 3.2E-15 127.9 19.3 274 111-420 147-435 (440)
202 PRK00178 tolB translocation pr 99.3 1E-09 2.3E-14 132.3 27.4 205 98-333 180-387 (430)
203 KOG0303 Actin-binding protein 99.2 3.7E-10 8E-15 125.4 19.8 206 75-311 81-300 (472)
204 KOG1523 Actin-related protein 99.2 1.2E-10 2.5E-15 126.7 15.5 198 76-306 11-237 (361)
205 KOG1445 Tumor-specific antigen 99.2 4.6E-11 9.9E-16 138.0 13.0 164 22-210 629-798 (1012)
206 KOG0270 WD40 repeat-containing 99.2 7E-10 1.5E-14 125.2 22.1 237 70-340 168-439 (463)
207 KOG0321 WD40 repeat-containing 99.2 5E-10 1.1E-14 130.7 20.2 273 122-424 55-392 (720)
208 PF10282 Lactonase: Lactonase, 99.2 6.1E-08 1.3E-12 113.6 37.9 284 34-345 1-317 (345)
209 KOG0270 WD40 repeat-containing 99.2 4.9E-10 1.1E-14 126.4 18.7 245 31-308 191-452 (463)
210 KOG1963 WD40 repeat protein [G 99.2 7E-09 1.5E-13 125.8 29.7 285 22-332 207-522 (792)
211 KOG4378 Nuclear protein COP1 [ 99.2 3.6E-09 7.8E-14 120.2 24.7 290 35-403 5-305 (673)
212 PF10282 Lactonase: Lactonase, 99.2 1E-07 2.2E-12 111.7 38.0 250 22-309 38-328 (345)
213 KOG2139 WD40 repeat protein [G 99.2 3.8E-09 8.2E-14 116.5 23.6 196 22-242 142-365 (445)
214 PRK04043 tolB translocation pr 99.2 4E-09 8.7E-14 126.2 26.2 203 76-305 188-400 (419)
215 KOG2394 WD40 protein DMR-N9 [G 99.2 6.6E-10 1.4E-14 127.5 18.0 136 75-232 219-384 (636)
216 KOG0321 WD40 repeat-containing 99.2 2.2E-09 4.8E-14 125.4 22.5 258 24-307 56-349 (720)
217 COG2706 3-carboxymuconate cycl 99.2 1.1E-07 2.4E-12 106.1 34.9 306 34-385 4-342 (346)
218 KOG2111 Uncharacterized conser 99.2 5.5E-08 1.2E-12 106.3 31.3 239 23-305 8-256 (346)
219 KOG4328 WD40 protein [Function 99.2 2.8E-09 6.1E-14 120.6 21.8 235 75-339 186-439 (498)
220 KOG1034 Transcriptional repres 99.2 5.3E-10 1.2E-14 121.8 15.5 246 27-305 98-383 (385)
221 KOG1007 WD repeat protein TSSC 99.1 4.7E-09 1E-13 112.7 21.9 201 75-305 63-289 (370)
222 KOG0646 WD40 repeat protein [G 99.1 2.4E-09 5.2E-14 121.6 20.6 218 17-283 79-330 (476)
223 PF02239 Cytochrom_D1: Cytochr 99.1 4.9E-08 1.1E-12 114.9 32.2 324 33-425 6-349 (369)
224 KOG0290 Conserved WD40 repeat- 99.1 1.1E-08 2.3E-13 110.2 23.8 290 77-419 46-361 (364)
225 PRK04043 tolB translocation pr 99.1 1.1E-08 2.4E-13 122.4 24.3 219 22-280 189-419 (419)
226 PF02239 Cytochrom_D1: Cytochr 99.1 1.4E-07 3E-12 111.1 33.1 316 91-477 10-345 (369)
227 KOG1587 Cytoplasmic dynein int 99.1 3.5E-08 7.7E-13 119.7 27.8 269 97-424 222-517 (555)
228 KOG0771 Prolactin regulatory e 99.1 1.6E-08 3.5E-13 114.1 22.8 201 177-424 148-355 (398)
229 KOG4328 WD40 protein [Function 99.1 1.9E-08 4E-13 114.1 23.2 277 22-344 188-489 (498)
230 KOG2110 Uncharacterized conser 99.1 3.4E-09 7.3E-14 117.5 16.7 151 28-211 93-249 (391)
231 KOG1188 WD40 repeat protein [G 99.0 6.5E-09 1.4E-13 114.2 16.7 291 88-423 41-346 (376)
232 KOG0642 Cell-cycle nuclear pro 99.0 2.8E-09 6E-14 123.5 14.4 241 75-345 294-556 (577)
233 KOG2394 WD40 protein DMR-N9 [G 99.0 4.2E-09 9E-14 121.1 14.6 122 22-144 221-360 (636)
234 PF04053 Coatomer_WDAD: Coatom 99.0 3.2E-06 6.9E-11 101.3 39.6 85 1014-1104 358-442 (443)
235 COG4946 Uncharacterized protei 99.0 2.5E-06 5.4E-11 97.2 34.6 253 31-338 234-506 (668)
236 KOG0642 Cell-cycle nuclear pro 98.9 8E-09 1.7E-13 119.8 14.5 209 22-257 296-560 (577)
237 KOG2315 Predicted translation 98.9 3.3E-07 7.2E-12 106.8 27.0 247 77-340 75-374 (566)
238 KOG2314 Translation initiation 98.9 5.8E-07 1.3E-11 104.1 28.5 321 88-478 179-524 (698)
239 KOG0322 G-protein beta subunit 98.9 1.7E-08 3.7E-13 107.4 15.0 253 75-422 14-322 (323)
240 KOG4227 WD40 repeat protein [G 98.9 8E-08 1.7E-12 106.4 20.2 284 111-423 52-387 (609)
241 KOG0290 Conserved WD40 repeat- 98.9 1.9E-07 4.2E-12 100.7 22.1 266 176-467 47-356 (364)
242 KOG0322 G-protein beta subunit 98.9 6.5E-09 1.4E-13 110.5 9.4 157 76-256 151-321 (323)
243 KOG1587 Cytoplasmic dynein int 98.9 1.9E-07 4.2E-12 113.3 23.1 252 22-305 244-516 (555)
244 KOG2066 Vacuolar assembly/sort 98.9 4.8E-05 1E-09 92.4 42.5 143 117-306 40-188 (846)
245 KOG4227 WD40 repeat protein [G 98.8 1.8E-07 4E-12 103.6 20.2 280 171-478 54-386 (609)
246 KOG1517 Guanine nucleotide bin 98.8 4.6E-07 1E-11 111.3 24.6 295 77-424 1066-1382(1387)
247 PLN02919 haloacid dehalogenase 98.8 3.1E-06 6.7E-11 111.9 33.4 265 22-308 569-891 (1057)
248 KOG1188 WD40 repeat protein [G 98.8 2.9E-07 6.3E-12 101.5 19.5 194 201-427 49-246 (376)
249 KOG2315 Predicted translation 98.8 6.1E-06 1.3E-10 96.5 30.6 325 98-478 12-389 (566)
250 COG5354 Uncharacterized protei 98.7 5.9E-06 1.3E-10 95.4 27.7 323 101-478 16-394 (561)
251 KOG0649 WD40 repeat protein [G 98.7 9.7E-06 2.1E-10 85.8 26.0 203 77-307 12-237 (325)
252 KOG2114 Vacuolar assembly/sort 98.7 0.0017 3.7E-08 79.9 48.5 162 278-478 29-200 (933)
253 COG2706 3-carboxymuconate cycl 98.7 4.2E-05 9.2E-10 85.9 32.1 251 22-306 41-322 (346)
254 KOG0644 Uncharacterized conser 98.7 6.5E-08 1.4E-12 116.0 10.1 256 22-307 192-470 (1113)
255 COG5290 IkappaB kinase complex 98.7 1.1E-06 2.3E-11 105.1 19.8 244 879-1146 864-1116(1243)
256 KOG4547 WD40 repeat-containing 98.7 3E-06 6.5E-11 99.7 23.4 131 86-241 69-208 (541)
257 PF08450 SGL: SMP-30/Gluconola 98.6 6.2E-05 1.3E-09 83.8 32.6 219 24-292 3-245 (246)
258 KOG0649 WD40 repeat protein [G 98.6 2.3E-05 4.9E-10 83.1 26.4 256 23-330 13-296 (325)
259 KOG1240 Protein kinase contain 98.6 3.4E-06 7.5E-11 105.5 23.3 206 76-308 1049-1276(1431)
260 COG5354 Uncharacterized protei 98.6 1.3E-05 2.7E-10 92.8 26.1 350 22-468 34-420 (561)
261 KOG0644 Uncharacterized conser 98.6 2E-07 4.4E-12 111.8 12.1 266 111-424 186-469 (1113)
262 KOG2111 Uncharacterized conser 98.6 2.7E-06 5.8E-11 93.4 19.4 147 31-210 103-256 (346)
263 PF00930 DPPIV_N: Dipeptidyl p 98.6 3E-05 6.5E-10 91.3 30.1 195 84-306 1-219 (353)
264 KOG1272 WD40-repeat-containing 98.6 2.5E-07 5.4E-12 105.3 11.4 196 76-308 130-326 (545)
265 KOG0974 WD-repeat protein WDR6 98.6 6.4E-07 1.4E-11 110.8 15.8 196 76-306 88-289 (967)
266 KOG2321 WD40 repeat protein [G 98.6 6.4E-07 1.4E-11 104.2 14.2 185 22-243 135-334 (703)
267 COG0823 TolB Periplasmic compo 98.5 1.9E-06 4.1E-11 102.9 18.1 193 76-294 193-391 (425)
268 KOG1354 Serine/threonine prote 98.5 9.5E-07 2.1E-11 97.3 14.1 213 75-305 25-301 (433)
269 KOG2314 Translation initiation 98.5 4.7E-05 1E-09 88.7 27.2 267 24-333 214-506 (698)
270 PF07433 DUF1513: Protein of u 98.5 0.0001 2.2E-09 83.0 27.6 213 77-309 6-251 (305)
271 KOG1517 Guanine nucleotide bin 98.4 6.6E-06 1.4E-10 101.6 19.3 244 32-306 1123-1382(1387)
272 KOG1354 Serine/threonine prote 98.4 1E-05 2.2E-10 89.4 18.9 268 116-423 25-359 (433)
273 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00039 8.4E-09 80.8 32.9 271 97-425 27-332 (352)
274 PF15492 Nbas_N: Neuroblastoma 98.4 0.00013 2.7E-09 80.0 26.5 145 122-294 3-169 (282)
275 KOG1310 WD40 repeat protein [G 98.4 5E-06 1.1E-10 96.2 15.3 218 65-308 44-306 (758)
276 KOG0974 WD-repeat protein WDR6 98.4 5.7E-06 1.2E-10 102.7 16.0 191 30-260 97-290 (967)
277 KOG1310 WD40 repeat protein [G 98.3 8.9E-06 1.9E-10 94.2 15.2 157 168-341 45-222 (758)
278 KOG3881 Uncharacterized conser 98.3 4.2E-05 9.1E-10 86.2 19.7 201 76-306 106-321 (412)
279 PLN02919 haloacid dehalogenase 98.3 9.6E-05 2.1E-09 98.1 26.6 214 22-260 625-890 (1057)
280 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00056 1.2E-08 79.5 29.1 247 33-308 13-333 (352)
281 KOG1240 Protein kinase contain 98.3 0.0001 2.2E-09 92.9 23.4 178 102-305 1034-1225(1431)
282 COG4946 Uncharacterized protei 98.2 7.7E-05 1.7E-09 85.5 19.4 148 76-242 360-508 (668)
283 KOG2321 WD40 repeat protein [G 98.2 4.6E-05 9.9E-10 89.2 17.5 194 80-294 138-335 (703)
284 COG0823 TolB Periplasmic compo 98.2 4.6E-05 9.9E-10 91.2 17.3 170 97-293 173-346 (425)
285 KOG4547 WD40 repeat-containing 98.1 0.00019 4.1E-09 85.0 20.3 189 85-306 3-221 (541)
286 PF11768 DUF3312: Protein of u 98.1 8.2E-05 1.8E-09 88.5 17.0 86 67-155 253-338 (545)
287 PF15492 Nbas_N: Neuroblastoma 98.1 0.0015 3.2E-08 71.8 24.9 195 74-307 42-261 (282)
288 COG5170 CDC55 Serine/threonine 98.0 3.6E-05 7.9E-10 83.9 11.8 298 116-468 26-358 (460)
289 PF08450 SGL: SMP-30/Gluconola 98.0 0.0089 1.9E-07 66.5 30.0 229 80-339 4-244 (246)
290 KOG1409 Uncharacterized conser 97.8 0.0023 5.1E-08 71.4 21.8 236 23-306 27-271 (404)
291 PF07433 DUF1513: Protein of u 97.8 0.0085 1.8E-07 67.8 26.7 220 176-428 7-252 (305)
292 COG5170 CDC55 Serine/threonine 97.8 0.00024 5.2E-09 77.7 13.6 216 75-307 26-311 (460)
293 PLN03218 maturation of RBCL 1; 97.8 0.017 3.8E-07 76.7 32.2 154 944-1102 592-779 (1060)
294 KOG1334 WD40 repeat protein [G 97.8 0.00024 5.2E-09 82.1 12.8 288 75-424 142-467 (559)
295 KOG4532 WD40-like repeat conta 97.8 0.0024 5.2E-08 69.2 19.4 227 33-294 85-324 (344)
296 KOG3914 WD repeat protein WDR4 97.7 0.0003 6.4E-09 80.0 13.0 158 27-219 69-232 (390)
297 KOG1272 WD40-repeat-containing 97.7 6.5E-05 1.4E-09 86.1 7.8 187 76-294 210-401 (545)
298 KOG3881 Uncharacterized conser 97.7 0.0016 3.6E-08 73.7 18.1 186 32-257 115-319 (412)
299 KOG1334 WD40 repeat protein [G 97.7 0.00033 7.1E-09 81.0 12.6 253 22-305 144-466 (559)
300 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.0028 6.1E-08 74.7 20.6 245 76-333 43-341 (353)
301 PLN03081 pentatricopeptide (PP 97.7 0.0034 7.4E-08 80.8 23.1 158 938-1102 365-553 (697)
302 KOG1912 WD40 repeat protein [G 97.6 0.037 8E-07 67.7 28.5 131 77-232 17-165 (1062)
303 KOG4190 Uncharacterized conser 97.6 0.00026 5.6E-09 82.0 10.3 167 111-308 731-909 (1034)
304 PF04053 Coatomer_WDAD: Coatom 97.6 0.01 2.2E-07 71.7 24.0 140 77-258 34-173 (443)
305 KOG3914 WD repeat protein WDR4 97.5 0.00075 1.6E-08 76.8 12.8 158 117-308 63-226 (390)
306 PLN03081 pentatricopeptide (PP 97.5 0.042 9.1E-07 70.9 29.8 158 943-1103 302-488 (697)
307 KOG2114 Vacuolar assembly/sort 97.5 0.0013 2.8E-08 80.8 14.4 139 963-1106 338-492 (933)
308 KOG1912 WD40 repeat protein [G 97.5 0.014 3.1E-07 71.1 22.3 152 175-350 17-186 (1062)
309 PF11768 DUF3312: Protein of u 97.4 0.0014 3.1E-08 78.2 14.1 110 76-209 206-328 (545)
310 PF10647 Gmad1: Lipoprotein Lp 97.4 0.0077 1.7E-07 67.6 18.6 151 118-294 25-187 (253)
311 PF02897 Peptidase_S9_N: Proly 97.4 0.14 3.1E-06 61.6 30.3 204 78-305 126-357 (414)
312 PF00400 WD40: WD domain, G-be 97.3 0.00038 8.3E-09 53.8 5.3 35 110-144 5-39 (39)
313 PRK13616 lipoprotein LpqB; Pro 97.3 0.012 2.5E-07 73.7 21.0 191 76-294 350-560 (591)
314 PRK11788 tetratricopeptide rep 97.3 0.027 5.8E-07 66.9 23.5 164 938-1102 114-307 (389)
315 PRK13616 lipoprotein LpqB; Pro 97.3 0.0029 6.2E-08 79.0 15.1 144 117-293 350-516 (591)
316 KOG2066 Vacuolar assembly/sort 97.3 0.0029 6.2E-08 77.5 14.0 130 84-238 80-221 (846)
317 PF06977 SdiA-regulated: SdiA- 97.3 0.02 4.3E-07 63.7 19.7 193 22-240 23-239 (248)
318 PF00400 WD40: WD domain, G-be 97.3 0.00057 1.2E-08 52.8 5.3 39 212-256 1-39 (39)
319 TIGR00990 3a0801s09 mitochondr 97.2 0.0054 1.2E-07 77.8 16.9 157 915-1075 378-567 (615)
320 KOG4626 O-linked N-acetylgluco 97.2 0.029 6.2E-07 67.2 20.0 108 976-1099 241-376 (966)
321 TIGR02917 PEP_TPR_lipo putativ 97.1 0.16 3.4E-06 66.4 29.4 182 916-1100 445-658 (899)
322 TIGR02917 PEP_TPR_lipo putativ 97.1 0.032 6.9E-07 72.9 22.9 156 942-1099 578-758 (899)
323 PLN03218 maturation of RBCL 1; 97.1 0.092 2E-06 70.0 26.8 156 944-1102 555-744 (1060)
324 KOG4532 WD40-like repeat conta 97.1 0.019 4.1E-07 62.5 16.5 129 200-340 136-271 (344)
325 PRK10049 pgaA outer membrane p 97.1 0.042 9.2E-07 71.6 23.2 106 996-1101 278-417 (765)
326 KOG0280 Uncharacterized conser 97.0 0.035 7.5E-07 61.3 18.1 207 95-332 44-266 (339)
327 PRK11447 cellulose synthase su 97.0 0.035 7.7E-07 75.6 22.6 183 915-1100 508-734 (1157)
328 PF14938 SNAP: Soluble NSF att 97.0 0.0036 7.9E-08 71.3 11.2 136 946-1102 30-180 (282)
329 TIGR00990 3a0801s09 mitochondr 97.0 0.065 1.4E-06 68.1 23.2 188 912-1101 341-566 (615)
330 PLN03077 Protein ECB2; Provisi 97.0 0.056 1.2E-06 71.5 23.4 157 938-1101 529-715 (857)
331 PRK15174 Vi polysaccharide exp 97.0 0.087 1.9E-06 67.4 23.9 159 941-1102 187-377 (656)
332 PRK11788 tetratricopeptide rep 97.0 0.036 7.8E-07 65.7 19.4 164 937-1102 75-274 (389)
333 PLN03077 Protein ECB2; Provisi 96.9 0.23 4.9E-06 65.8 28.2 157 944-1101 367-578 (857)
334 KOG0309 Conserved WD40 repeat- 96.9 0.011 2.5E-07 71.4 13.7 275 115-424 23-340 (1081)
335 TIGR03300 assembly_YfgL outer 96.9 1.5 3.2E-05 52.1 32.1 98 31-144 64-161 (377)
336 KOG0280 Uncharacterized conser 96.9 0.034 7.4E-07 61.3 16.1 185 23-243 124-322 (339)
337 KOG0547 Translocase of outer m 96.8 0.013 2.7E-07 68.7 13.2 129 889-1021 343-493 (606)
338 PF06977 SdiA-regulated: SdiA- 96.8 0.45 9.8E-06 53.1 25.2 207 174-420 22-247 (248)
339 KOG4640 Anaphase-promoting com 96.8 0.004 8.8E-08 74.6 9.3 79 116-216 20-98 (665)
340 COG3391 Uncharacterized conser 96.8 0.31 6.7E-06 58.2 25.3 200 22-258 75-283 (381)
341 KOG1840 Kinesin light chain [C 96.8 0.059 1.3E-06 65.7 19.2 83 975-1075 305-392 (508)
342 KOG2247 WD40 repeat-containing 96.8 0.0001 2.3E-09 85.2 -3.9 156 933-1098 47-219 (615)
343 PF12234 Rav1p_C: RAVE protein 96.8 0.045 9.7E-07 68.0 18.2 152 962-1116 353-525 (631)
344 KOG1064 RAVE (regulator of V-A 96.7 0.0047 1E-07 81.0 9.8 187 76-307 2209-2400(2439)
345 PF04840 Vps16_C: Vps16, C-ter 96.7 0.34 7.5E-06 56.1 23.9 83 1023-1112 215-297 (319)
346 PF04841 Vps16_N: Vps16, N-ter 96.6 0.41 8.9E-06 57.6 25.0 188 76-290 81-277 (410)
347 PRK11447 cellulose synthase su 96.6 0.32 6.9E-06 66.5 26.8 19 714-732 189-207 (1157)
348 PF04097 Nic96: Nup93/Nic96; 96.6 0.043 9.4E-07 69.3 17.1 127 974-1104 395-532 (613)
349 PF10647 Gmad1: Lipoprotein Lp 96.6 0.23 4.9E-06 55.8 21.0 148 77-243 25-186 (253)
350 PF00780 CNH: CNH domain; Int 96.5 0.95 2.1E-05 51.0 26.1 228 27-317 2-265 (275)
351 TIGR03300 assembly_YfgL outer 96.5 0.86 1.9E-05 54.1 26.8 228 31-308 104-341 (377)
352 PF04841 Vps16_N: Vps16, N-ter 96.5 1.1 2.4E-05 54.0 27.6 51 98-149 62-112 (410)
353 PRK02888 nitrous-oxide reducta 96.4 0.14 3.1E-06 63.1 19.1 178 81-306 198-405 (635)
354 KOG1897 Damage-specific DNA bi 96.4 5.1 0.00011 51.4 42.3 346 74-479 486-856 (1096)
355 PF14583 Pectate_lyase22: Olig 96.4 3.1 6.7E-05 49.0 29.0 207 82-307 42-274 (386)
356 PF14870 PSII_BNR: Photosynthe 96.4 1.7 3.8E-05 49.9 26.5 226 22-294 18-254 (302)
357 PF06433 Me-amine-dh_H: Methyl 96.3 1.2 2.7E-05 51.3 24.9 107 97-219 17-135 (342)
358 KOG4190 Uncharacterized conser 96.3 0.0084 1.8E-07 70.0 7.0 159 76-262 736-911 (1034)
359 PF08596 Lgl_C: Lethal giant l 96.3 0.67 1.4E-05 55.4 23.3 256 22-305 3-335 (395)
360 COG3391 Uncharacterized conser 96.2 2.7 5.8E-05 50.2 28.4 244 22-307 32-285 (381)
361 KOG3621 WD40 repeat-containing 96.1 0.38 8.3E-06 59.0 20.3 109 22-142 35-150 (726)
362 PF14583 Pectate_lyase22: Olig 96.1 4 8.6E-05 48.1 27.8 184 122-334 41-252 (386)
363 PF02897 Peptidase_S9_N: Proly 96.1 0.094 2E-06 63.1 15.5 126 177-306 127-261 (414)
364 KOG4640 Anaphase-promoting com 96.1 0.016 3.5E-07 69.6 8.5 73 225-308 23-95 (665)
365 PF13429 TPR_15: Tetratricopep 96.1 0.011 2.4E-07 67.1 7.1 197 936-1137 13-237 (280)
366 PF13360 PQQ_2: PQQ-like domai 96.1 1.3 2.8E-05 48.4 23.3 188 84-308 33-233 (238)
367 PF14938 SNAP: Soluble NSF att 96.1 0.1 2.2E-06 59.5 14.9 80 976-1075 97-180 (282)
368 TIGR02521 type_IV_pilW type IV 96.1 0.072 1.6E-06 57.0 13.1 25 992-1016 101-125 (234)
369 PF15390 DUF4613: Domain of un 96.1 0.17 3.7E-06 61.0 16.6 151 224-423 21-184 (671)
370 KOG4626 O-linked N-acetylgluco 96.0 0.09 2E-06 63.2 13.9 153 939-1098 260-456 (966)
371 PRK02888 nitrous-oxide reducta 96.0 0.78 1.7E-05 56.9 22.3 145 76-257 235-403 (635)
372 PRK15174 Vi polysaccharide exp 95.9 1.2 2.5E-05 57.3 24.9 143 942-1088 223-398 (656)
373 KOG1645 RING-finger-containing 95.9 0.64 1.4E-05 53.7 19.3 154 110-294 187-352 (463)
374 KOG1840 Kinesin light chain [C 95.8 0.41 8.9E-06 58.6 19.2 31 1045-1075 320-350 (508)
375 KOG1008 Uncharacterized conser 95.8 0.0048 1E-07 73.9 2.4 202 76-305 57-275 (783)
376 PF12931 Sec16_C: Sec23-bindin 95.7 0.073 1.6E-06 60.8 11.6 119 954-1078 5-143 (284)
377 KOG1064 RAVE (regulator of V-A 95.6 0.065 1.4E-06 71.1 11.6 186 88-306 2181-2367(2439)
378 KOG2247 WD40 repeat-containing 95.6 0.0048 1E-07 72.0 1.2 163 11-189 66-267 (615)
379 PF15390 DUF4613: Domain of un 95.5 4.7 0.0001 49.2 25.6 109 22-137 58-176 (671)
380 KOG1586 Protein required for f 95.5 0.35 7.6E-06 52.3 14.6 14 945-958 28-41 (288)
381 COG3204 Uncharacterized protei 95.5 0.41 8.8E-06 53.6 15.5 141 78-242 45-200 (316)
382 PF13360 PQQ_2: PQQ-like domai 95.4 2.6 5.6E-05 46.0 22.4 190 31-258 35-230 (238)
383 PF12234 Rav1p_C: RAVE protein 95.4 0.34 7.4E-06 60.4 16.4 106 985-1091 447-555 (631)
384 KOG2076 RNA polymerase III tra 95.4 0.32 6.9E-06 61.3 16.0 117 985-1102 203-341 (895)
385 COG3386 Gluconolactonase [Carb 95.4 2.7 5.9E-05 48.5 22.7 234 22-294 26-277 (307)
386 KOG1585 Protein required for f 95.3 0.9 2E-05 49.5 17.0 118 974-1098 32-171 (308)
387 KOG1409 Uncharacterized conser 95.3 1.2 2.6E-05 50.6 18.5 235 76-345 25-265 (404)
388 PRK10049 pgaA outer membrane p 95.3 2.9 6.3E-05 54.7 25.6 157 942-1100 248-450 (765)
389 PF14870 PSII_BNR: Photosynthe 95.3 7.4 0.00016 44.8 26.8 220 23-294 64-296 (302)
390 KOG0882 Cyclophilin-related pe 95.3 0.11 2.5E-06 60.2 10.8 191 86-308 19-234 (558)
391 PF13429 TPR_15: Tetratricopep 95.2 0.038 8.2E-07 62.7 7.2 80 1052-1136 182-270 (280)
392 KOG2003 TPR repeat-containing 95.2 0.33 7.3E-06 56.3 14.2 125 915-1041 537-685 (840)
393 COG3386 Gluconolactonase [Carb 95.2 3.7 8.1E-05 47.4 23.0 145 82-242 31-182 (307)
394 PRK10115 protease 2; Provision 95.2 3.3 7.2E-05 53.3 25.0 58 77-137 128-192 (686)
395 smart00320 WD40 WD40 repeats. 94.9 0.073 1.6E-06 38.5 5.6 34 111-144 7-40 (40)
396 KOG1832 HIV-1 Vpr-binding prot 94.8 0.048 1.1E-06 67.3 6.7 140 170-332 1098-1243(1516)
397 KOG3621 WD40 repeat-containing 94.8 0.16 3.5E-06 62.2 10.7 147 78-242 36-190 (726)
398 KOG0309 Conserved WD40 repeat- 94.7 0.11 2.4E-06 63.4 9.1 199 174-424 25-233 (1081)
399 KOG2376 Signal recognition par 94.7 0.64 1.4E-05 56.3 15.3 130 944-1075 59-200 (652)
400 COG3063 PilF Tfp pilus assembl 94.6 0.29 6.2E-06 53.0 10.9 100 975-1079 91-202 (250)
401 PRK09782 bacteriophage N4 rece 94.5 5 0.00011 53.6 24.8 159 939-1101 517-701 (987)
402 KOG0882 Cyclophilin-related pe 94.5 0.33 7.2E-06 56.5 11.9 186 92-308 117-308 (558)
403 KOG2695 WD40 repeat protein [G 94.4 0.17 3.7E-06 57.0 9.2 131 72-219 249-385 (425)
404 COG2956 Predicted N-acetylgluc 94.4 2.8 6.1E-05 47.6 18.5 135 987-1122 104-261 (389)
405 PRK12370 invasion protein regu 94.4 0.87 1.9E-05 57.2 16.7 110 992-1102 340-466 (553)
406 KOG1586 Protein required for f 94.3 0.53 1.1E-05 51.0 12.2 30 1064-1093 114-143 (288)
407 PRK10747 putative protoheme IX 94.3 0.72 1.6E-05 55.4 15.3 106 935-1041 88-212 (398)
408 KOG1155 Anaphase-promoting com 94.3 0.39 8.4E-06 56.5 11.9 105 989-1096 329-464 (559)
409 PRK10115 protease 2; Provision 94.2 7.8 0.00017 50.0 24.9 120 118-256 128-253 (686)
410 KOG1832 HIV-1 Vpr-binding prot 94.2 0.049 1.1E-06 67.3 4.7 182 76-308 1102-1294(1516)
411 KOG2034 Vacuolar sorting prote 94.1 0.54 1.2E-05 59.3 13.4 145 970-1116 369-569 (911)
412 PF12894 Apc4_WD40: Anaphase-p 94.0 0.12 2.6E-06 42.1 5.3 33 116-148 11-43 (47)
413 TIGR00540 hemY_coli hemY prote 93.9 0.44 9.5E-06 57.4 12.4 100 916-1017 98-214 (409)
414 PF12894 Apc4_WD40: Anaphase-p 93.6 0.17 3.7E-06 41.2 5.3 33 76-108 12-44 (47)
415 PRK15363 pathogenicity island 93.5 0.89 1.9E-05 46.9 11.7 50 1066-1129 106-155 (157)
416 TIGR02604 Piru_Ver_Nterm putat 93.4 2.1 4.5E-05 50.9 16.6 153 76-239 14-200 (367)
417 PRK12370 invasion protein regu 93.4 1.7 3.7E-05 54.6 16.7 103 974-1078 352-469 (553)
418 COG2956 Predicted N-acetylgluc 93.3 7.3 0.00016 44.5 19.1 164 907-1076 88-275 (389)
419 PF12895 Apc3: Anaphase-promot 93.2 0.12 2.6E-06 47.3 4.6 51 1024-1075 33-83 (84)
420 PF13449 Phytase-like: Esteras 93.2 4.1 8.8E-05 47.6 18.4 110 178-289 89-231 (326)
421 PF12569 NARP1: NMDA receptor- 93.1 24 0.00052 43.8 25.5 55 1051-1106 229-291 (517)
422 KOG1008 Uncharacterized conser 93.1 0.037 8E-07 66.6 1.2 193 22-256 60-273 (783)
423 PRK14574 hmsH outer membrane p 93.1 3.5 7.6E-05 53.9 19.1 184 916-1102 48-255 (822)
424 COG3204 Uncharacterized protei 93.0 7 0.00015 44.1 18.4 168 22-217 87-269 (316)
425 PF13424 TPR_12: Tetratricopep 93.0 0.8 1.7E-05 40.9 9.5 60 1010-1075 12-71 (78)
426 KOG1275 PAB-dependent poly(A) 92.9 1.3 2.9E-05 55.8 13.9 187 86-305 146-342 (1118)
427 KOG1130 Predicted G-alpha GTPa 92.9 2 4.3E-05 49.9 14.3 176 943-1146 67-307 (639)
428 PRK10747 putative protoheme IX 92.7 2.8 6E-05 50.4 16.5 158 942-1101 129-318 (398)
429 PF07995 GSDH: Glucose / Sorbo 92.6 2.5 5.5E-05 49.4 15.6 58 77-135 3-71 (331)
430 PRK15179 Vi polysaccharide bio 92.6 0.66 1.4E-05 59.3 11.5 113 935-1075 90-213 (694)
431 COG3490 Uncharacterized protei 92.6 0.88 1.9E-05 50.6 10.6 112 180-294 120-247 (366)
432 KOG1916 Nuclear protein, conta 92.6 0.12 2.6E-06 64.4 4.4 93 43-144 156-263 (1283)
433 PF12688 TPR_5: Tetratrico pep 92.6 0.67 1.4E-05 45.8 9.0 59 1008-1076 6-64 (120)
434 KOG2168 Cullins [Cell cycle co 92.4 0.96 2.1E-05 57.2 12.0 112 987-1102 619-732 (835)
435 TIGR03606 non_repeat_PQQ dehyd 92.1 7.4 0.00016 47.3 18.8 53 76-128 30-90 (454)
436 PF12931 Sec16_C: Sec23-bindin 92.1 1.1 2.4E-05 51.2 11.5 94 1012-1107 4-114 (284)
437 TIGR02521 type_IV_pilW type IV 92.1 6.2 0.00013 41.9 16.9 52 1051-1102 136-194 (234)
438 smart00320 WD40 WD40 repeats. 92.0 0.4 8.7E-06 34.4 5.3 38 213-256 3-40 (40)
439 KOG2079 Vacuolar assembly/sort 91.9 1.8 3.8E-05 55.8 13.4 99 233-344 98-199 (1206)
440 COG3490 Uncharacterized protei 91.9 1.4 3.1E-05 49.0 11.1 54 82-136 120-181 (366)
441 PRK09782 bacteriophage N4 rece 91.8 3.1 6.7E-05 55.5 16.6 19 939-957 86-104 (987)
442 KOG2695 WD40 repeat protein [G 91.8 0.6 1.3E-05 52.9 8.3 114 32-155 264-386 (425)
443 KOG1275 PAB-dependent poly(A) 91.7 1 2.2E-05 56.8 10.9 158 181-422 183-341 (1118)
444 PF08553 VID27: VID27 cytoplas 91.7 1.1 2.3E-05 57.6 11.5 102 33-144 543-645 (794)
445 KOG0985 Vesicle coat protein c 91.6 6 0.00013 50.8 17.2 154 943-1102 1116-1304(1666)
446 PF09976 TPR_21: Tetratricopep 91.5 1.3 2.8E-05 45.0 10.1 81 935-1016 52-144 (145)
447 PF04097 Nic96: Nup93/Nic96; 91.4 3.1 6.8E-05 52.8 15.4 150 938-1090 265-453 (613)
448 PF14783 BBS2_Mid: Ciliary BBS 91.3 4.4 9.5E-05 39.3 12.6 96 26-140 8-108 (111)
449 COG3071 HemY Uncharacterized e 91.2 2.5 5.3E-05 49.3 12.7 104 938-1042 91-213 (400)
450 PRK13613 lipoprotein LpqB; Pro 91.1 12 0.00026 47.3 19.8 156 118-291 364-525 (599)
451 smart00299 CLH Clathrin heavy 91.1 4 8.6E-05 41.1 13.1 44 998-1041 77-121 (140)
452 PF05694 SBP56: 56kDa selenium 91.1 42 0.0009 40.3 22.7 226 184-428 86-347 (461)
453 PLN00033 photosystem II stabil 91.0 42 0.00092 40.3 27.9 138 117-292 239-390 (398)
454 PF09976 TPR_21: Tetratricopep 91.0 3.7 8E-05 41.7 12.8 84 991-1075 49-143 (145)
455 PLN00033 photosystem II stabil 91.0 7.5 0.00016 46.6 17.2 140 76-242 239-390 (398)
456 PF07995 GSDH: Glucose / Sorbo 90.8 9.9 0.00021 44.5 17.9 114 119-243 4-134 (331)
457 PRK13684 Ycf48-like protein; P 90.8 13 0.00027 43.7 18.7 141 116-292 172-322 (334)
458 PF09295 ChAPs: ChAPs (Chs5p-A 90.7 0.82 1.8E-05 54.5 8.8 101 922-1045 189-297 (395)
459 TIGR03302 OM_YfiO outer membra 90.5 2.5 5.4E-05 46.4 12.0 22 935-956 37-58 (235)
460 KOG2002 TPR-containing nuclear 90.3 9.2 0.0002 49.3 17.5 112 989-1100 563-739 (1018)
461 PRK14720 transcript cleavage f 90.3 1.8 3.9E-05 56.3 11.8 94 987-1101 100-193 (906)
462 KOG4714 Nucleoporin [Nuclear s 90.3 0.44 9.6E-06 52.1 5.4 72 76-147 180-255 (319)
463 KOG2002 TPR-containing nuclear 90.3 4.7 0.0001 51.8 14.9 152 942-1095 623-800 (1018)
464 PF14783 BBS2_Mid: Ciliary BBS 90.2 6.9 0.00015 38.0 12.8 65 78-145 2-70 (111)
465 PF04733 Coatomer_E: Coatomer 90.1 4.2 9E-05 46.7 13.6 164 938-1102 42-226 (290)
466 PRK13615 lipoprotein LpqB; Pro 89.9 21 0.00046 44.6 20.2 160 120-305 337-502 (557)
467 KOG0985 Vesicle coat protein c 89.9 45 0.00097 43.5 22.4 102 990-1091 1104-1247(1666)
468 KOG2047 mRNA splicing factor [ 89.7 21 0.00045 44.3 19.0 149 916-1075 100-273 (835)
469 KOG3081 Vesicle coat complex C 89.7 20 0.00044 40.0 17.4 94 1006-1101 111-231 (299)
470 TIGR00540 hemY_coli hemY prote 89.7 19 0.0004 43.4 19.5 75 908-983 122-210 (409)
471 KOG1585 Protein required for f 89.5 3.1 6.7E-05 45.6 10.9 67 1007-1075 95-175 (308)
472 PRK14720 transcript cleavage f 89.5 7.9 0.00017 50.6 16.6 118 968-1102 125-248 (906)
473 KOG1156 N-terminal acetyltrans 89.4 36 0.00077 42.4 20.8 53 1024-1077 413-466 (700)
474 PRK14574 hmsH outer membrane p 89.3 12 0.00026 49.1 18.4 168 934-1104 37-230 (822)
475 COG1506 DAP2 Dipeptidyl aminop 89.2 76 0.0016 40.6 26.1 174 75-294 59-237 (620)
476 KOG2076 RNA polymerase III tra 89.1 15 0.00033 47.0 18.0 30 1046-1075 410-439 (895)
477 KOG1126 DNA-binding cell divis 89.0 7.5 0.00016 48.1 15.0 214 906-1123 323-604 (638)
478 KOG2395 Protein involved in va 89.0 2.9 6.4E-05 50.1 11.2 56 88-144 442-498 (644)
479 PF13449 Phytase-like: Esteras 88.9 15 0.00032 42.9 17.3 112 22-136 21-166 (326)
480 PF12688 TPR_5: Tetratrico pep 88.9 1.5 3.2E-05 43.4 7.6 80 935-1015 5-100 (120)
481 PRK11138 outer membrane biogen 88.9 59 0.0013 38.8 30.6 71 31-109 68-142 (394)
482 PF10168 Nup88: Nuclear pore c 88.8 46 0.00099 43.1 22.7 80 220-307 82-181 (717)
483 PRK11189 lipoprotein NlpI; Pro 88.7 6.6 0.00014 45.1 14.0 77 935-1015 102-190 (296)
484 PF10602 RPN7: 26S proteasome 88.4 4.4 9.6E-05 42.9 11.3 92 984-1075 30-138 (177)
485 KOG0550 Molecular chaperone (D 88.3 3 6.4E-05 48.9 10.4 78 935-1015 173-274 (486)
486 PF10168 Nup88: Nuclear pore c 88.3 7.7 0.00017 49.9 15.3 85 118-209 86-178 (717)
487 PRK13684 Ycf48-like protein; P 88.2 11 0.00024 44.1 15.7 142 75-242 172-322 (334)
488 PRK10803 tol-pal system protei 87.9 2.7 5.8E-05 47.5 9.9 98 946-1075 145-242 (263)
489 TIGR03302 OM_YfiO outer membra 87.7 18 0.00038 39.6 16.1 25 1051-1075 204-228 (235)
490 PF00780 CNH: CNH domain; Int 87.5 54 0.0012 36.8 25.6 139 126-306 5-166 (275)
491 PRK15179 Vi polysaccharide bio 87.2 4.8 0.0001 51.7 12.6 87 990-1077 86-181 (694)
492 PRK13614 lipoprotein LpqB; Pro 86.6 25 0.00055 44.1 18.0 163 118-304 344-517 (573)
493 PF04840 Vps16_C: Vps16, C-ter 86.6 69 0.0015 37.3 20.6 44 998-1042 245-288 (319)
494 PF05096 Glu_cyclase_2: Glutam 86.6 61 0.0013 36.5 22.9 184 23-242 47-250 (264)
495 PF03178 CPSF_A: CPSF A subuni 86.6 62 0.0013 37.4 20.6 139 87-258 42-202 (321)
496 PRK11138 outer membrane biogen 86.4 80 0.0017 37.7 27.6 64 31-109 119-182 (394)
497 KOG2376 Signal recognition par 86.4 33 0.00072 42.2 17.9 61 1011-1077 183-251 (652)
498 COG2909 MalT ATP-dependent tra 86.3 9.7 0.00021 48.8 14.1 254 811-1075 112-440 (894)
499 PF05096 Glu_cyclase_2: Glutam 85.9 67 0.0014 36.3 24.6 189 67-292 36-250 (264)
500 KOG2444 WD40 repeat protein [G 85.9 2.4 5.1E-05 46.0 7.4 95 30-143 68-163 (238)
No 1
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=100.00 E-value=9.7e-196 Score=1746.47 Aligned_cols=1083 Identities=34% Similarity=0.489 Sum_probs=905.5
Q ss_pred CccceecccccccccccCcccceeEEeeecCCCEEEEEeC------CCcEEEEecccccccccceeeccccccccccCCC
Q 000992 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASS------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP 74 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 74 (1196)
||||++.+++.+++.. .++ .+.+|+...+.++++|+ +-.+++.+. ..+ + .. ...++...+
T Consensus 1 MkNL~l~~~~~f~~~~-~~~---~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~--~~k-v--~~-----~~~s~~~~~ 66 (1265)
T KOG1920|consen 1 MKNLKLRYMKTFEIVA-GPG---NAQAFILSPELVTVASSTINELLGLKIFEIES--VGK-V--RL-----VAESFLPED 66 (1265)
T ss_pred CCceeeeeeeeecccC-CCC---chhheeeccccceeeeceeeecccccceeeec--ccc-c--cc-----eeecccCcC
Confidence 9999999999998433 222 45566666666666655 112444443 222 1 11 123333333
Q ss_pred C-CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 G-DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~-~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
+ +.|++++|+.|+..+|+++++|+|++.|+++..++++|.+++||.+++||||+++||.+|+.+++.+|+++|+|+.+.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4 589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc--Cccccc------cCcccc---------------------CCCCeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 154 PLEELA--EGFDVH------EPELSS---------------------SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 154 ~l~~~~--~~~~Vs------~tqf~~---------------------~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
+++.++ .+++|+ +|||+| .++..++|+||+||+||| |+++.++ ++.|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA-Vs~~~~~-~~~Rki 224 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA-VSFVESE-TGTRKI 224 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEE-EEEEecc-CCceeE
Confidence 996666 678886 899992 566778899999999999 8887665 344999
Q ss_pred EEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCc-EEEEEEccC
Q 000992 205 KVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCM 283 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~-V~~laWSpD 283 (1196)
||||+ +|.|.+++++..++.++++|.|+|.+||+.+.+++ ..+|+||||||++||+|.++.+.+.. |..|+||.+
T Consensus 225 rV~dr-Eg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s---d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDR-EGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS---DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEecc-cchhhcccCcccccccceeecCCCCeEeeeeecCC---CCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 99999 69999999999999999999999999999999876 56899999999999999999665444 999999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeec--CCCeeE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV--MENSTA 361 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~--~d~~~v 361 (1196)
|++||+.......+.|++|+++||||||||++.|++... +.|||..+++|+++..+|++..++|.|.++. ++.+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~ 378 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWTTDRSPNDGSTV 378 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEEEeeeccCCCCceE
Confidence 999999887776668999999999999999999976544 8999999999999998999999999999984 788999
Q ss_pred EEEcCCEEEEeeccccCCCCCceeeeecCCCC-EEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeee
Q 000992 362 LVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA-VTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEA 440 (1196)
Q Consensus 362 ~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~-V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~ 440 (1196)
.||||+.+++|||+.++||||||.+++.++.+ +...+-|. ..++...+|+.....-...+.....+.++.|..-.
T Consensus 379 ~VIDgs~llvT~ls~~vvPPPM~~y~l~~~~~~~~~~~~s~----~~~~l~~sd~~~~~~~~~~~n~~~~~~~~~f~~f~ 454 (1265)
T KOG1920|consen 379 YVIDGSRLLVTPLSLAVVPPPMCSYSLLFDSNIVVMPAESK----SALHLFASDIKSRWDGLDFPNSREFLKLKEFSEFI 454 (1265)
T ss_pred EEEeCCEEEEecchhhcCCCCceeeeecCCccceeeccccc----CchhhhhcccchhhhhccccCchhhcccccccccc
Confidence 99999999999999999999999998887764 33333333 23444445544333333334333334444443111
Q ss_pred -ecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeee
Q 000992 441 -CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQI 519 (1196)
Q Consensus 441 -~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1196)
+....+.+.++.+.|+.+....+.... ++...+..++. +++. .+.++.....+
T Consensus 455 ~~~~t~~~~~~~~~~~~~~~~~~v~~~~--~~~~k~~~~~~----------~~~~--------------~~~~l~~~~v~ 508 (1265)
T KOG1920|consen 455 GSLVTPSGHKFYLLEFSVNEDTDVNANG--SNRSKIGEVGV----------QETT--------------EHHQLCQVEVY 508 (1265)
T ss_pred hhhhcCCcceEEEEEEecccceeeecCC--cchhheeeece----------EEcc--------------cccEEEEEEEE
Confidence 111223346677777665543333222 12222332211 1100 11112111111
Q ss_pred ccCCcEEEEecCCCCCce-EEEEeeCCeEEEEeccc-----cccCCCCCCCCCCCCCCCCceeEEEecCCCCCccEEEEE
Q 000992 520 PLEGLVIAIAPNNAKKYS-AFLQFHGGKISEYMSRV-----GLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGL 593 (1196)
Q Consensus 520 ~~~~~v~~~~~~~~~~~~-~~~~~~dG~v~~~~~~~-----~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL 593 (1196)
.....+.. .+ +... .++++.||+|+.++.++ ... ...+....+.|.+|+|..+..++ + +.+.+||
T Consensus 509 d~~~~v~~-~~---~~~h~~~~~~~dg~Iv~~~~~~i~k~i~~~-~s~ei~~~~sp~~~~d~~~~~v~--~--~~v~~gl 579 (1265)
T KOG1920|consen 509 DHCVGVVS-SY---NFEHGLFLLAGDGVIVSLCDNGIHKGIGIA-PSLEIVELKSPSPCHDGNVAFVD--E--DTVEFGL 579 (1265)
T ss_pred eccccchh-ee---eccccchhhcCCceEEEcccCCcccccccc-ccccEEEecCCccccccceeeec--c--ccccccc
Confidence 11111111 11 2223 77888999999886432 111 12233456789999999999887 3 4578999
Q ss_pred cCCCceEeCCEEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCcccccccccccc
Q 000992 594 DDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINI 673 (1196)
Q Consensus 594 ~~~~~L~~n~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~ 673 (1196)
++.|+||+|.+.|++||+||.++++ |+++||.+|.|+|++|.+..+++++...++ ... ..||++|.
T Consensus 580 ts~~~~~~n~~~l~~~~~sf~~~se-------~~~~~t~~~~l~~~~l~~~~fd~l~~~~~~----~~~---~~~E~vr~ 645 (1265)
T KOG1920|consen 580 TSFGRLFINQILLSSNVSSFFFYSE-------FVLFTTTSHLLQFVCLVDFDFDTLQRVEDD----ESG---RHDERVRN 645 (1265)
T ss_pred cceeEEEEeeEEeecCceEEEEehh-------hhhHHHHHhhhhhheeeeeeecchhhcccc----ccc---ccchhhhh
Confidence 9999999999999999999999999 999999999999999998877776654332 111 27899999
Q ss_pred ccCCCEEEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHHhHH
Q 000992 674 WERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSAS 753 (1196)
Q Consensus 674 vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~~~~ 753 (1196)
|||||+||+++|++ ++||||||||||||||||+|||+.||++|++++|++||.+|||||||||+|+||+ |+.|+.|++
T Consensus 646 vErGsklVa~~~~k-a~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~-~~~Fl~nv~ 723 (1265)
T KOG1920|consen 646 VERGSKLVAVVPQK-AAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYD-PKRFLKNVP 723 (1265)
T ss_pred hhhcceEEEeccch-hhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcC-HHHHHhhHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhcCCcchHHHHHhhccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHHhhcCCCCCCc
Q 000992 754 EFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSR 833 (1196)
Q Consensus 754 ~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~~~~~~~~~~ 833 (1196)
.||+|+++++||+|||++|++||||+|||+.+ +.+.. +.-.+..+..+|||+||+++|++|++ ..+++|
T Consensus 724 afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~--~~s~k-------~~~~~r~~~d~kv~~vc~~vr~~l~~--~~~~~~ 792 (1265)
T KOG1920|consen 724 AFLKQINRVNHLELFLTELKEEDVTKTMYSST--SGSGK-------QVYMSRDPYDNKVNSVCDAVRNALER--RAPDKF 792 (1265)
T ss_pred HHhccCCcHHHHHHHHhhcccchhhhhhcccc--ccccc-------eeEEeccchhhHHHHHHHHHHHHHhh--cCcchh
Confidence 99999999999999999999999999999988 53221 12233445669999999999999998 457799
Q ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHH
Q 000992 834 ELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALN 913 (1196)
Q Consensus 834 ~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~ 913 (1196)
.|+|||+|||+.||++++||++|+++++.+ ..+.+++||+|||||||+|.||++|||+|||+||++|||+
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~----------~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~ 862 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQLAQ----------VAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQK 862 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhcc----------cchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHH
Confidence 999999999999999999999999998631 3678999999999999999999999999999999999999
Q ss_pred hcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHH
Q 000992 914 SQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQV 992 (1196)
Q Consensus 914 sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i 992 (1196)
|||||||||||||+|++||+++|||+||+|||||++|+.||.++|+.+++++++|+++| +||++||.|| +|+++++.+
T Consensus 863 SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh-~Ly~~aL~ly~~~~e~~k~i 941 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKH-GLYDEALALYKPDSEKQKVI 941 (1265)
T ss_pred hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhc-ccchhhhheeccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999 9999999999 999999999
Q ss_pred HHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000992 993 LEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 993 ~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1196)
+++||+||++.+.|++|+.+|+++|+.+||++||.++|+|++|+.+|.++..+++++..+|++|+..|.++++|.|||++
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 000992 1073 ALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRR-LL 1150 (1196)
Q Consensus 1073 ~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~e~~~~~~e~l~~~~~~~~~~~~Rl~~lR~~k-~~ 1150 (1196)
.++||+|+++||.+||+|+.|++|+|+|.++++.|++++ ++|+|.|++++.+++|++++++|.+|++||++||++| ++
T Consensus 1022 l~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe~k~~~ 1101 (1265)
T KOG1920|consen 1022 LLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRENKEKR 1101 (1265)
T ss_pred HHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999 88
Q ss_pred HhhhcccccCCCCCCCCCccccccccccccccccc
Q 000992 1151 LVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTT 1185 (1196)
Q Consensus 1151 ~~~~~~~~~~~~~~~~~D~~S~~ss~~s~~s~yt~ 1185 (1196)
|.+ |+++|+ ..+.++|++|++||..+| |.||+
T Consensus 1102 ~~~-~~~~ev-~~d~d~dlas~ssS~~~~-s~ysG 1133 (1265)
T KOG1920|consen 1102 PEA-FADGEV-EHDLDDDLASESSSTNSG-SQYSG 1133 (1265)
T ss_pred hhh-hhcccc-Cccccccccccccccccc-ccccC
Confidence 888 999987 337788999999888776 55554
No 2
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=100.00 E-value=3.8e-182 Score=1717.57 Aligned_cols=871 Identities=35% Similarity=0.573 Sum_probs=740.9
Q ss_pred CccceecccccccccccCccc-ceeEEeeecCCCEEEEEeCCCcE---EEEecccccccccce-eeccccccccccCCCC
Q 000992 1 MNNLKLCAEVPLNLELQSKDE-ILQFSALDIEQNRLFFASSANNI---YSAQLSSFQNERASI-KTAISAEIEHIDLEPG 75 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~l~~~s~~~~i---~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 75 (1196)
||||++++++.+.++...+++ .+.+.+||+++|.+|++.+.+.+ ++++. ..+..+.+ +.+++.. .|..++
T Consensus 1 MRNL~~~~~~~~~~~~~~~~~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~--~~~~~~~~~l~s~~~~---~~~~~~ 75 (928)
T PF04762_consen 1 MRNLRLLRRGEFKLESQSGPDLPITATAFDSDSDSIYFVLGPNEIDYVIELDR--FSQDGSVEVLASWDAP---LPDDPN 75 (928)
T ss_pred CCCcEEeeeeeEeccccCCcccccceEEEecCCCeEEEEECCCCcceEEEEEe--eccCCceeEEEecccc---CCcCCC
Confidence 999999999999987765533 78999999999999999775544 56666 55544322 2222111 113346
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEE----ECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLH----SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw----~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+.|++++|++|...||+++++|+|.++ +.++..+|++|.+++||.|++||||+++||++|++++|++|+++|++++
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEE
Confidence 899999999999999999999999999 8888899999999999999999999999999999999999999999999
Q ss_pred eeeccccc--Cccccc------cCcccc------------------------CCCCeEEEEEccCCceEEEeeccccccC
Q 000992 152 ENPLEELA--EGFDVH------EPELSS------------------------SFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1196)
Q Consensus 152 ~~~l~~~~--~~~~Vs------~tqf~~------------------------~~~~v~~isWspDG~~lAsvss~d~~~~ 199 (1196)
|.++++.+ .+++|| |||||| ++++.++|+|||||+||| |++.+++.+
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA-Vss~~~~~~ 234 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA-VSSVEPETG 234 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE-EEEEEcCCC
Confidence 99999888 778997 999982 456788999999999999 899865522
Q ss_pred CCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc-CCCCcEEEE
Q 000992 200 LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELL 278 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~l 278 (1196)
..|+||||+| +|++++++|+.+|++.+++|+|+|++||++++.++ +.+|+||||||++||+|.++. +.+..|..|
T Consensus 235 ~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~---~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 235 SRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD---RHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred ceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCC---CcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2799999999 89999999999999999999999999999998654 799999999999999999984 556789999
Q ss_pred EEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeee---
Q 000992 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA--- 354 (1196)
Q Consensus 279 aWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~--- 354 (1196)
+||+||++||+...|. ||||+++||||||||++.|+.... ..+.|||+++++|++++.+|++..++|.|.++
T Consensus 311 ~Wn~ds~iLAv~~~~~----vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR----VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred EECCCCCEEEEEecCC----ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence 9999999999999886 999999999999999999977555 56999999999999999889999999999998
Q ss_pred ---cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccc
Q 000992 355 ---VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431 (1196)
Q Consensus 355 ---~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~ 431 (1196)
++|.++|+||||+++++|||+.++||||||.++++++++|++|+|++++ ..+|+.++||+|.+|.++........
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~--~~~avl~~d~~l~~~~~~~~~~~~~~ 464 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN--SRFAVLTSDGSLSIYEWDLKNMWSVK 464 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC--CeEEEEECCCCEEEEEecCCCccccc
Confidence 5578999999999999999999999999999999999999999999999 78999999999999998654322100
Q ss_pred c---CCceeee---eecccccCCcEEEEEEecCCeEEEEEecC-CCCceEEEEeeccCCccccchhhhhhhhcccccccc
Q 000992 432 E---GTEFVVE---ACISETAFGSVIHLIWLGSHLLLSVSHHG-PRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQG 504 (1196)
Q Consensus 432 ~---g~~~~~~---~~~~~~~~~~v~~l~~~~d~~lla~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1196)
. ...+... ..........+++++|..++.++++...+ ..+.+.++.+.-
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------ 520 (928)
T PF04762_consen 465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD------------------------ 520 (928)
T ss_pred CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc------------------------
Confidence 0 0001000 00012234589999999999988877665 335555555421
Q ss_pred cccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCC
Q 000992 505 LLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNG 584 (1196)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~ 584 (1196)
......+......++.+..+...+ ....+++|+.+|+|+.++..... ....+||++|+|++++.++ +
T Consensus 521 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~------~~~~~fp~~c~~~~~~~~~--~ 587 (928)
T PF04762_consen 521 ----SENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGEL------SQIVKFPQPCPWMEVCQIN--G 587 (928)
T ss_pred ----CCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCc------cccccCCCCCcEEEEEEEC--C
Confidence 011223344455677777666555 34469999999999988664421 2237999999999999987 4
Q ss_pred C-CccEEEEEcCCCceEeCCEEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCcc
Q 000992 585 P-LKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRR 663 (1196)
Q Consensus 585 ~-~~~~~~gL~~~~~L~~n~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~ 663 (1196)
. .+.++|||+++|+||+|+++||+|||||++|++ ||||||.+|+|+||||. ....+++++.+. ..
T Consensus 588 ~~~~~~~~GLs~~~~Ly~n~~~la~~~tSF~v~~~-------~Ll~TT~~h~l~fv~L~-~~~~~l~~~~~~----~~-- 653 (928)
T PF04762_consen 588 SEDKRVLFGLSSNGRLYANSRLLASNCTSFAVTDS-------FLLFTTTQHTLKFVHLN-SSVEDLEIPPDS----PE-- 653 (928)
T ss_pred ccceeEEEEECCCCEEEECCEEEecCCceEEEEcC-------EEEEEecCceEEEEECc-CchhhcccccCc----cc--
Confidence 0 024899999999999999999999999999999 99999999999999998 233444443322 11
Q ss_pred ccccccccccccCCCEEEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecc
Q 000992 664 KEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHC 743 (1196)
Q Consensus 664 ~~~~de~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~ 743 (1196)
...||++|+||||||||+++|++ ++||||||||||||||||+|||+.||++|++++|++||.+|||||||||||||||
T Consensus 654 -~~~de~~R~VERGsriVt~vp~~-~~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~ 731 (928)
T PF04762_consen 654 -NSYDERCRRVERGSRIVTAVPSD-TSVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHN 731 (928)
T ss_pred -cccccccccCccCCEEEEEeCCC-ceEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECC
Confidence 11589999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHHHHHHhcCCcchHHHHHhhccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHH
Q 000992 744 GWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKAL 823 (1196)
Q Consensus 744 ~p~~F~~~~~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l 823 (1196)
|++||+||+.||+||++++|||||||+|+|||||+|||+++ +.... ... ..........++|||+||+|||++|
T Consensus 732 -p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~--~~~~~--~~~-~~~~~~~~~~~~KVn~ICdair~~l 805 (928)
T PF04762_consen 732 -PEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDT--YPPSS--EAQ-PNSNSSTASSESKVNKICDAIRKAL 805 (928)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccc--ccccc--ccc-cccccCCCccccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 72111 000 0111122335799999999999999
Q ss_pred hhcCCCCCCchhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccC
Q 000992 824 EEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD 903 (1196)
Q Consensus 824 ~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD 903 (1196)
++. .++.+|+||||||||||+||+||+||++|++||++ +++.||+||||||||+|+|+||++||||||
T Consensus 806 ~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-----------~~~~ae~alkyl~fLvDvn~Ly~~ALG~YD 873 (928)
T PF04762_consen 806 EKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE-----------DPESAEEALKYLCFLVDVNKLYDVALGTYD 873 (928)
T ss_pred ccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----------ChHHHHHHHhHheeeccHHHHHHHHhhhcC
Confidence 953 78999999999999999999999999999999976 788999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcC
Q 000992 904 LNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958 (1196)
Q Consensus 904 ~~lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g 958 (1196)
|+||+||||||||||||||||||+|++||+++|||+||+|||||++||+||++||
T Consensus 874 l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 874 LELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999997
No 3
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=100.00 E-value=1.9e-158 Score=1355.06 Aligned_cols=1060 Identities=23% Similarity=0.279 Sum_probs=870.2
Q ss_pred CccceecccccccccccCcccceeEEeeecCCCEEEEE----eCCCcEEEEecccccccccceeeccccccccccCCC-C
Q 000992 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFA----SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-G 75 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~----s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 75 (1196)
||||..++...++ ..+ | ..-.++||..+|.||+. |.|.+|..... ++....+ +++.+.+.. .
T Consensus 1 M~Nl~t~~~~~fp-t~s--g-~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~---s~~~d~s------~l~~F~ip~f~ 67 (1243)
T COG5290 1 MENLFTRYMSTFP-TAS--G-DEDELGFDSVGDWIYITCVLGSTDKGIEVAKE---SSIYDES------GLKRFEIPFFP 67 (1243)
T ss_pred CcchHhhhhccCC-CCC--C-ChHHhcccccCceEEEEeecCCCCCCeeeeee---ccccchh------heeEeccCCcc
Confidence 9999999999885 333 4 45678889999999965 44566655544 2221111 133332211 3
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEE--ECCC--CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLH--SVDG--NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw--~~~~--~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+.+.++.|+.+-.+++.....|+|+.. |+.. ..++++|.+++||.+++||.|.++++.++++.+|.+|++.||+++
T Consensus 68 dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~is 147 (1243)
T COG5290 68 DKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPIS 147 (1243)
T ss_pred hHhhhhhhhhhhheeeEEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccc
Confidence 789999999999999999999998763 3322 356799999999999999999999999999999999999999999
Q ss_pred eeeccccc---Cccccc------cCcccc-----------------------CCCCeEEEEEccCCceEEEeeccccccC
Q 000992 152 ENPLEELA---EGFDVH------EPELSS-----------------------SFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1196)
Q Consensus 152 ~~~l~~~~---~~~~Vs------~tqf~~-----------------------~~~~v~~isWspDG~~lAsvss~d~~~~ 199 (1196)
+..+...+ -++||+ +|||+| -++....|+|+||.+|++ ++.... .
T Consensus 148 e~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~-v~r~Ee--~ 224 (1243)
T COG5290 148 EYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNL-VGRSEE--R 224 (1243)
T ss_pred hhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceee-ecchhc--c
Confidence 99998777 567876 999993 235567899999999999 887654 3
Q ss_pred CCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEE
Q 000992 200 LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLK 279 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~la 279 (1196)
.+|.+|||.| +|++.+.+||.+|..+.++|.|+|..+|+.+.|+ ......|+|||+||++||+|.++.+-+..+..++
T Consensus 225 prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~-~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~ 302 (1243)
T COG5290 225 PRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDG-CSTSESVIFFERNGLRHGEFDLRVGCDEKAFLEN 302 (1243)
T ss_pred cccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCC-CCCcceEEEEccCCcccCCccccCCchhhhhhhh
Confidence 5789999999 9999999999999999999999999999998663 2345789999999999999998866666789999
Q ss_pred EccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee-----
Q 000992 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA----- 354 (1196)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~----- 354 (1196)
|+..+++||++..+. |+||+++|||||||+++..++ ...++|||+...+|++.. .+.+....|.....
T Consensus 303 wn~~s~vlav~~~n~----~~lwttkNyhWYLK~e~~ip~--~s~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~ 375 (1243)
T COG5290 303 WNLLSTVLAVAEGNL----LKLWTTKNYHWYLKVERQIPG--ISYVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSE 375 (1243)
T ss_pred hhHHHHHHHHhhcce----EEEEEccceEEEEEEeecCCC--cceeeeccccCcEEEEec-CCeEEEEEeehhhhcCCcc
Confidence 999999999998776 999999999999999997642 356899999999887754 46666665554332
Q ss_pred -cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC
Q 000992 355 -VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 355 -~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g 433 (1196)
|.|.|+..||||+.+++|||..+++|||||.+.++++.+|.+|+.|-.. .+.|++..| .+..+.++..+.+.. -
T Consensus 376 ~p~d~g~~~ViDGs~~l~Tplsl~n~PPPm~~~~~~~d~NV~dv~~s~~~--~~~aa~~~d-rli~f~~~s~e~i~k--~ 450 (1243)
T COG5290 376 YPFDNGTSYVIDGSYMLYTPLSLKNLPPPMFSVRVGFDTNVVDVFPSFAE--KKGAALLRD-RLIMFRWDSEEFINK--R 450 (1243)
T ss_pred cCccCCceEEEcCceEEecchhhhcCCCCeEEEEecCCCceeeeccchhh--hhHhhhccc-eeEEEecCcHHHHHH--h
Confidence 8889999999999999999999999999999999999999999877666 778888666 455666665332211 0
Q ss_pred CceeeeeecccccCC---cEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccc
Q 000992 434 TEFVVEACISETAFG---SVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAG 510 (1196)
Q Consensus 434 ~~~~~~~~~~~~~~~---~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1196)
.+| +....+ .+.++.+..+|..+.+.- . ++-..++.... + | .+ +.
T Consensus 451 ~ef------~~sef~s~v~f~~~l~l~~~~v~ll~d-t-nn~s~~~i~~~-~---------d-------~~-------e~ 498 (1243)
T COG5290 451 TEF------LESEFDSIVLFDGFLVLKSGHVFLLKD-T-NNESDTYITRN-G---------D-------VD-------ER 498 (1243)
T ss_pred ccc------cHHhhhhhccccceEEecCceEEEEec-c-CCCcceEEeec-C---------c-------cc-------ch
Confidence 011 111111 367777887776544332 1 22222222211 1 1 11 00
Q ss_pred cceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCCCCccEE
Q 000992 511 WHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLL 590 (1196)
Q Consensus 511 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~ 590 (1196)
.+... ++....++.. +......+.+++++|+|..|+....+ -..++||++|..+.+.++- . ..+.
T Consensus 499 ~k~~~---ve~~~~~~l~--~~~c~~~l~y~t~~G~v~~yn~e~kl------~e~~kfp~~v~df~v~pVH--~--t~v~ 563 (1243)
T COG5290 499 KKRGT---VETRRTSTLV--HQLCQTLLRYGTCVGVVKHYNFEEKL------YELLKFPNGVIDFSVDPVH--S--TLVA 563 (1243)
T ss_pred hhccc---eeeeeeehhh--HHHHHHHHhhcccceeEEEecchhhh------HHHhhCCCceeEEEeeccc--c--ceee
Confidence 11110 1111111111 11256778899999999999765422 1245899999999998765 2 4578
Q ss_pred EEEcCCCceEeCCEEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccc
Q 000992 591 FGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISY 670 (1196)
Q Consensus 591 ~gL~~~~~L~~n~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~ 670 (1196)
|||++.|+||++..++++.|+||..|+. |++|||++|.|.||||... ++++..-.++.+ .-.||+
T Consensus 564 igit~~g~lfa~qvll~~~V~s~~~T~~-------FvlftTt~n~l~Fvhl~st-~~~l~~Veeg~v-------~~~dEr 628 (1243)
T COG5290 564 IGITDIGQLFALQVLLKKSVFSHNGTKL-------FVLFTTTENILSFVHLEST-FKPLITVEEGTV-------RFFDER 628 (1243)
T ss_pred eecccHHHHHHHHHHHHhhhheeeccee-------EEeecchhhhhheEEeecc-cccceeecccch-------hhhhhh
Confidence 9999999999999999999999999999 9999999999999999865 777665333211 125899
Q ss_pred cccccCCCEEEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHH
Q 000992 671 INIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQ 750 (1196)
Q Consensus 671 ~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~ 750 (1196)
+|.|||||++|.++|+. +.||||||||||||||||+|||+.||++|.+++|++||..||+||||||||+||+ |+.|++
T Consensus 629 ~r~vergs~~v~~lpsk-~~vVlq~tRGnLETiyPrImvLa~Vrk~i~akkYkdAf~vCrthrv~l~Il~Dyd-pelfie 706 (1243)
T COG5290 629 KRSVERGSHKVELLPSK-DFVVLQVTRGNLETIYPRIMVLAFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYD-PELFIE 706 (1243)
T ss_pred HHHhhhcceeeEeeccc-ceEEEecccCcceeecceeeeHHHHHHHHHHhhhhHHHHHHHheeeccceeecCC-hHHHHh
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hHHHHHHhcCCcchHHHHHhhccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHHhhcCCCC
Q 000992 751 SASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPES 830 (1196)
Q Consensus 751 ~~~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~~~~~~~ 830 (1196)
|++.||.|+.++|||+||+++|+++|||+|||... .++ . +.....+...+|||.+|+++|+.|++. .+.
T Consensus 707 nlevFv~~~~rvdyl~lF~~~L~~ddvt~~~ys~i--skS-~-------q~~~~~k~fD~kvnl~ck~~rehl~s~-~y~ 775 (1243)
T COG5290 707 NLEVFVTECRRVDYLSLFSEALQRDDVTKTDYSFI--SKS-E-------QARRFRKVFDLKVNLECKDTREHLESL-IYN 775 (1243)
T ss_pred hHHHHHHhhhhhhHHHHHHHhcChhhccccchhhh--hHH-H-------HHHHHHHHhcchhhhccHHHHHHHHhh-hcc
Confidence 99999999999999999999999999999999887 421 0 011112223589999999999999986 789
Q ss_pred CCchhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHH
Q 000992 831 PSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIV 910 (1196)
Q Consensus 831 ~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~v 910 (1196)
++|+|+|+|||++.+||++++||.+|+.|-. ..+..+++++|||||+|+|-+|+.||++||+.||++|
T Consensus 776 d~~~qtiitayl~~np~n~~aal~~is~l~r------------~se~~d~~v~~lCfl~dvn~~~~~aLsLyd~slalli 843 (1243)
T COG5290 776 DESIQTIITAYLIGNPGNGKAALMRISPLSR------------CSESLDEDVKNLCFLRDVNFFNEFALSLYDKSLALLI 843 (1243)
T ss_pred chhHHHHHHHHHhcCCcchHHHHhhhhhhhh------------ccccchHHHHhHhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999998842 3456789999999999999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHH
Q 000992 911 ALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKM 989 (1196)
Q Consensus 911 Aq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~ 989 (1196)
||+||||||||||||+++|++++.+|+|.||+||++|++||.|+.+.. .-++|.++|+..| ++|+.+|.|| +|.+..
T Consensus 844 aq~sqkdpReylpfl~e~qd~e~lrrkf~Id~yl~~ye~ALghl~E~~-n~~~Ev~~yi~~h-dly~~~l~lyrYd~e~Q 921 (1243)
T COG5290 844 AQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNEDL-NVIREVMKYICRH-DLYDFLLLLYRYDGELQ 921 (1243)
T ss_pred HHHhccCchhhhhHHHHhhhhHHHHhHhchhhhHHHHHHHHHhhHhHH-HHHHHHHHHHHhc-cchHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999874 3479999999999 9999999999 999999
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-HHcCChHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEEL-QALGKPGE 1068 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L-~~~~~~~e 1068 (1196)
+.++..||.||.+.+.+.+|+.+|+..|++.+|+.+|..|++|++|+.|+.+- ...+++..|+.|+..| .+.++|.+
T Consensus 922 k~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~--~~~e~~~~AE~L~S~l~ve~R~~~d 999 (1243)
T COG5290 922 KFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQE--KGYEFNLCAELLPSDLLVEFRKAGD 999 (1243)
T ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh--cchHHHHHHHhhhhhHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999874 3456788888888854 46666999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1069 AAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQR 1147 (1196)
Q Consensus 1069 Aa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~e~~~~~~e~l~~~~~~~~~~~~Rl~~lR~~ 1147 (1196)
|+.+.+.|+.++.+|+.|+|+|.++++|+++|..-...++.+. +.+.|.|.|+...|++++++.|++.|..||++||.+
T Consensus 1000 a~~i~l~yl~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~k 1079 (1243)
T COG5290 1000 AEKILLTYLENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDK 1079 (1243)
T ss_pred HHHHHHHHHhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998877777777 999999999999999999999999999999999999
Q ss_pred H-HhHhhhcccccCCCCCCCCCccccccccccc-cc---ccc
Q 000992 1148 R-LLLVAKLQSEDRSMNDLDDDTVSETSSTFSG-MS---VYT 1184 (1196)
Q Consensus 1148 k-~~~~~~~~~~~~~~~~~~~D~~S~~ss~~s~-~s---~yt 1184 (1196)
| ++|.+ ++.+-. .+...|| +|++++..|. .| .||
T Consensus 1080 k~e~p~a-~~~~~~-e~~t~dD-vs~a~~~~st~~s~~t~yt 1118 (1243)
T COG5290 1080 KCEMPEA-REILRE-ELLTLDD-VSEAFVKYSTRLSALTEYT 1118 (1243)
T ss_pred hhcChHH-HHhhhh-hhcCccc-hhhhhhhhhhHHHHHHHHh
Confidence 9 99999 665321 1333444 5665444333 33 666
No 4
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=5.2e-36 Score=341.04 Aligned_cols=756 Identities=17% Similarity=0.192 Sum_probs=447.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
..|.+++|-|||.+|+.|. +..+.+||++.| .+..+.+|.+.|.|++||.||++.|+|+.|+.|++|+..-+.+-..
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY- 90 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY- 90 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee-
Confidence 3799999999999998875 557899999764 5566666899999999999999999999999999997543322211
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
.|.+.+.+++|.|=.+.||| .+. ..+-+|+.+....+. -. ....+.+.+|..||
T Consensus 91 ----------------SH~D~IQCMsFNP~~h~Las-CsL-------sdFglWS~~qK~V~K-~k-ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 ----------------SHNDAIQCMSFNPITHQLAS-CSL-------SDFGLWSPEQKSVSK-HK-SSSRIICCSWTNDG 144 (1081)
T ss_pred ----------------ccCCeeeEeecCchHHHhhh-cch-------hhccccChhhhhHHh-hh-hheeEEEeeecCCC
Confidence 36678899999999999995 443 356789883322211 11 23346899999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-----eeEEEEccCCcceEEEEEecCCEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-----LLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-----~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+++|-|-.++ +|.+-+++|...+...-++.....|++|+|+|.+. ++|+..... |+-+++++...-
T Consensus 145 qylalG~~nG------TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q---TLSFy~LsG~~I 215 (1081)
T KOG1538|consen 145 QYLALGMFNG------TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ---TLSFYQLSGKQI 215 (1081)
T ss_pred cEEEEeccCc------eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc---eeEEEEecceee
Confidence 9999998754 68888999887665444444456899999999874 566666555 566655553110
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
-....+.| ++.+++.-|.|... .++..++.+..+. -+| +++..+. +
T Consensus 216 gk~r~L~F---dP~CisYf~NGEy~-LiGGsdk~L~~fT---------------R~G--vrLGTvg-------------~ 261 (1081)
T KOG1538|consen 216 GKDRALNF---DPCCISYFTNGEYI-LLGGSDKQLSLFT---------------RDG--VRLGTVG-------------E 261 (1081)
T ss_pred cccccCCC---CchhheeccCCcEE-EEccCCCceEEEe---------------ecC--eEEeecc-------------c
Confidence 00111222 12445555555542 2332233332211 122 2222111 2
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecc---------cccC-----CcEEEEEE
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS---------ETAF-----GSVIHLIW 455 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~---------~~~~-----~~v~~l~~ 455 (1196)
++.+||.|+..|++ +.+++|..||||.-|++... +.+.+....+..-.++. .+.. +-|..++.
T Consensus 262 ~D~WIWtV~~~PNs--Q~v~~GCqDGTiACyNl~fS-TVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiai 338 (1081)
T KOG1538|consen 262 QDSWIWTVQAKPNS--QYVVVGCQDGTIACYNLIFS-TVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAI 338 (1081)
T ss_pred cceeEEEEEEccCC--ceEEEEEccCeeehhhhHHh-HhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHh
Confidence 57899999999999 99999999999999987531 11111111110000000 0000 00111111
Q ss_pred ecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeee--eccCCcEEEEecCCC
Q 000992 456 LGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQ--IPLEGLVIAIAPNNA 533 (1196)
Q Consensus 456 ~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~ 533 (1196)
- ++ -||+-- +..+.++.+.. ++.... ++++.+. ..++-...
T Consensus 339 Y-rn-rLAVQL---peki~iYel~s-e~~~~m------------------------hY~v~ekI~kkf~cSLl------- 381 (1081)
T KOG1538|consen 339 Y-RN-RLAVQL---PEKILIYELYS-EDLSDM------------------------HYRVKEKIIKKFECSLL------- 381 (1081)
T ss_pred h-hh-hheecc---cceEEEEeccc-cccccc------------------------hhHHHHHHHhhccceEE-------
Confidence 1 11 234322 24566665531 100000 1111000 01111111
Q ss_pred CCceEEEEeeCCeEEEEeccccccCCC---CCCCCCCCCCCCCceeEEEecCCCCCccEEEEEcCCCceEeCCEEeecCc
Q 000992 534 KKYSAFLQFHGGKISEYMSRVGLTGGA---LTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNC 610 (1196)
Q Consensus 534 ~~~~~~~~~~dG~v~~~~~~~~~~~~~---~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~~~~~L~~n~~~~~~~~ 610 (1196)
....|.++.-... .++... .....-....+-.++.|.- ++.| -+.+++||.+.+-+-+
T Consensus 382 -------VVc~~HiVlCqek-rLqClDF~Gvk~ReW~M~S~iRYikV~G-GP~g-REgL~vGlknGqV~ki--------- 442 (1081)
T KOG1538|consen 382 -------VVCANHIVLCQEK-RLQCLDFSGVKEREWQMESLIRYIKVIG-GPPG-REGLLVGLKNGQVLKI--------- 442 (1081)
T ss_pred -------EEEcCeEEEEccc-ceeeecccchhhhhhhHHHHHHhhhhhc-CCCC-cceeEEEecCCcEEEE---------
Confidence 1122233222110 000000 0000000111122223320 1111 1347899987654432
Q ss_pred eeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCEEEEEecCCccE
Q 000992 611 SSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAA 690 (1196)
Q Consensus 611 tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~iV~~~p~~~~~ 690 (1196)
.+.++ . =+|++|+..-.+|++++..- +.+.+ .| |.|--+|.=+-++ -
T Consensus 443 ---F~dN~-----~-PiLl~~~~tAvrClDINA~R-~kLAv---------------VD------D~~~c~v~DI~t~--e 489 (1081)
T KOG1538|consen 443 ---FVDNL-----F-PILLLKQATAVRCLDINASR-KKLAV---------------VD------DNDTCLVYDIDTK--E 489 (1081)
T ss_pred ---EecCC-----c-hhheecccceeEEeeccCCc-ceEEE---------------Ec------cCCeEEEEEccCC--c
Confidence 33333 1 24566777789999986421 11111 11 1222234434343 4
Q ss_pred EEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHHhHHHHHHhcCCcchHHHHHh
Q 000992 691 VILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVC 770 (1196)
Q Consensus 691 vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~~~~~Fv~qv~~~~~l~lFls 770 (1196)
+.+|-|--|==+.+-.- .. .+|=+|.=.||+=.--- |..- .+..-||=.
T Consensus 490 lL~QEpg~nSV~wNT~~------E~-----------MlcfT~~g~L~VR~~~~-P~h~-qk~~G~VvG------------ 538 (1081)
T KOG1538|consen 490 LLFQEPGANSVAWNTQC------ED-----------MLCFTGGGYLNVRASTF-PVHR-QKLQGFVVG------------ 538 (1081)
T ss_pred eEeecCCCceEEeeccc------cc-----------eEEEecCCceEEEeccC-Ccch-hcceEEEEE------------
Confidence 55565554433222110 00 01222222222222222 2110 000000000
Q ss_pred hccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHH--HHHhhcCCCCCCchhhhhhhhhhcCCcc
Q 000992 771 AINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIR--KALEEKVPESPSRELCILTTLARSDPPA 848 (1196)
Q Consensus 771 ~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~--~~l~~~~~~~~~~~~~ilT~~~~~~pp~ 848 (1196)
..++|+ .|-... ..++= .......|+ +-. -.
T Consensus 539 ------------------------------------~~gsk~--FCL~~~~i~~~ev--p~~~~m~q~-----Iea--g~ 571 (1081)
T KOG1538|consen 539 ------------------------------------YNGSKI--FCLHVFSISAVEV--PQSAPMYQY-----IER--GL 571 (1081)
T ss_pred ------------------------------------ecCceE--EEEEeeeeecccc--cccccchhh-----hhc--cc
Confidence 000110 011100 00110 111111111 000 01
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHHhcCCcch--hhHHHH
Q 000992 849 LEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKE--FLPYLQ 926 (1196)
Q Consensus 849 le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~Dpke--YlpfL~ 926 (1196)
+.+|++. .-+ =....|+..|.+.||..+||+.| ++|.+.-|+ ||.++-
T Consensus 572 f~ea~~i-acl-------------------------gVv~~DW~~LA~~ALeAL~f~~A----RkAY~rVRdl~~L~li~ 621 (1081)
T KOG1538|consen 572 FKEAYQI-ACL-------------------------GVTDTDWRELAMEALEALDFETA----RKAYIRVRDLRYLELIS 621 (1081)
T ss_pred hhhhhcc-ccc-------------------------ceecchHHHHHHHHHhhhhhHHH----HHHHHHHhccHHHHHHH
Confidence 2222222 000 02346899999999999999975 666443322 677777
Q ss_pred HHhcC------ChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHH
Q 000992 927 ELESM------PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWAD 998 (1196)
Q Consensus 927 ~L~~l------~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~ 998 (1196)
+|+++ |....+++|.+|.|+|.+|.++|.++|. -..|+||+.+. +||+.|.+.+ .++++.+.+.++.|+
T Consensus 622 EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~--enRAlEmyTDl-RMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGH--ENRALEMYTDL-RMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred HHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCc--hhhHHHHHHHH-HHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 88876 4457789999999999999999999997 49999999999 9999999999 899999999999999
Q ss_pred HHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
|..+.++.+.||+|.+++|++.||++.....|+.+.++.|++++ +..++ +-+..+|.+|...+.+.-|++||.+ +|
T Consensus 699 WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl--d~~er-e~l~~~a~ylk~l~~~gLAaeIF~k-~g 774 (1081)
T KOG1538|consen 699 WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL--DKAER-EPLLLCATYLKKLDSPGLAAEIFLK-MG 774 (1081)
T ss_pred HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc--chhhh-hHHHHHHHHHhhccccchHHHHHHH-hc
Confidence 99999999999999999999999999999999888888999987 45565 4568899999999999999999999 99
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH
Q 000992 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITK 1111 (1196)
Q Consensus 1079 d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~ 1111 (1196)
|.+.-|+|+++.++|.||++||++|+ +++++
T Consensus 775 D~ksiVqlHve~~~W~eAFalAe~hP--e~~~d 805 (1081)
T KOG1538|consen 775 DLKSLVQLHVETQRWDEAFALAEKHP--EFKDD 805 (1081)
T ss_pred cHHHHhhheeecccchHhHhhhhhCc--ccccc
Confidence 99999999999999999999999995 77776
No 5
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.7e-31 Score=303.38 Aligned_cols=819 Identities=16% Similarity=0.186 Sum_probs=475.7
Q ss_pred cccCcccceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc----ceeecccc--ccccccCCCCCCEEEEEEccCCC
Q 000992 15 ELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA----SIKTAISA--EIEHIDLEPGDSITAFDYLMEKE 88 (1196)
Q Consensus 15 ~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~----~~~~~~~~--~l~~~~~~~~~~v~~v~~spd~~ 88 (1196)
.++... .+.+.+|+.+++-+.++..|+-+...-+...+.+.+ ...++|.. .|.+| .+.|.-+.|.-..+
T Consensus 10 ~iPnnv-kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH----~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 10 GIPNNV-KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH----NASVMVVTWNENNQ 84 (1189)
T ss_pred CCCCCc-eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC----cceEEEEEeccccc
Confidence 344444 789999999999999999999655544420111111 01111111 13444 46899999999999
Q ss_pred EEEEEECCCcEEEEECCCCeE-E--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccc-------
Q 000992 89 ALIVGTSSGLLLLHSVDGNAT-E--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEEL------- 158 (1196)
Q Consensus 89 ~La~as~dG~I~lw~~~~~~~-e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~------- 158 (1196)
.|-+.-.+|-|++|-.-.+.. | +-..-.+-|.+++|+-||+.++++-.||.|++=+.+++-+-+..+...
T Consensus 85 KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 999999999999998865543 2 222335669999999999999999999999876544443332222111
Q ss_pred ---c--------Ccc-ccc--c----------------CccccCCCCeEEEEEc--------cCCceEEEeeccccccCC
Q 000992 159 ---A--------EGF-DVH--E----------------PELSSSFSFKSPISWR--------GDGKYFATLSEFCNSSKL 200 (1196)
Q Consensus 159 ---~--------~~~-~Vs--~----------------tqf~~~~~~v~~isWs--------pDG~~lAsvss~d~~~~~ 200 (1196)
. +++ ++- + ..|......+..|.|. ||.-.|| +...
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la-vcy~------ 237 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA-VCYA------ 237 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE-EEEc------
Confidence 0 000 110 1 1111233457778883 6888888 7763
Q ss_pred CCEEEEEECCCC-cEEEEeccCCCceeEEEEcCCCCeEEEEecCCC---CCCCCeEEEEeCCCeeEEEEEeccCCCCcEE
Q 000992 201 HKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---ENKCPSIVFYERNGLERSSFDINEQIDSTVE 276 (1196)
Q Consensus 201 d~~irVWd~~~G-~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~---~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~ 276 (1196)
++.++|-..++. +..-... .-.+....|+|+|..+|.++.+.. +...+.|.|+..-|...|.+..++ ..|.
T Consensus 238 nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg---~~It 312 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPG---SCIT 312 (1189)
T ss_pred CceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCC---ceee
Confidence 355555433221 1111111 134577899999999999987643 223457999999998888766553 3699
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEec-CCEE-EEEEEEEEecCCcEEEEEccCCCc-eEEEEecCCcEEEEEEEEee
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW-YLKYEIRYLRRDGIRFMWHPTKPL-QLICWTLDGQITTYNFIWTT 353 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~w-ylkq~l~~~~~~~~~v~Wsp~~~~-~L~~~~~~g~~~~~~~~~~~ 353 (1196)
+|+|-..|-.+|.+... .|.+=++. +|.| |...++.+.-.. ++.|. .++. |++
T Consensus 313 ~lsWEg~gLriA~Avds----fiyfanIRP~ykWgy~e~TvVy~y~~-------~e~p~y~i~F-------------wdt 368 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIAVDS----FIYFANIRPEYKWGYIEETVVYVYQK-------EELPQYGIMF-------------WDT 368 (1189)
T ss_pred eeEEcCCceEEEEEecc----eEEEEeecccceEEEeeeEEEEEEcc-------CCCcceEEEE-------------Eec
Confidence 99999999999998765 47777754 8898 555555442211 22221 1111 111
Q ss_pred ecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC
Q 000992 354 AVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 354 ~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g 433 (1196)
. . +.++++ ++ ....+++|+.+- -.|+.-..||.+.=++. ++..+
T Consensus 369 k-~--------nek~vK----------------~V---~~~~~~a~~~eh--CvL~~~~d~~~i~e~s~-----le~~~- 412 (1189)
T KOG2041|consen 369 K-T--------NEKTVK----------------TV---THFENMAFYREH--CVLINRQDDGVIPEYST-----LENRS- 412 (1189)
T ss_pred c-c--------Chhhhh----------------hh---cceeehheeccc--EEEEeccccCCCcchhh-----hhccc-
Confidence 1 0 111110 00 011233343333 33333333333322210 00000
Q ss_pred Cceeeeeecc-cc----cCCcEEE-EEEecCCeEEEEEecCCCCceEEEEeeccCCc---cccchhhhhhhhcccccccc
Q 000992 434 TEFVVEACIS-ET----AFGSVIH-LIWLGSHLLLSVSHHGPRHSNYFRGATLNEDG---LLGFYAQEIELACSEDHVQG 504 (1196)
Q Consensus 434 ~~~~~~~~~~-~~----~~~~v~~-l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 504 (1196)
..+...-|-+ +. ....++. ++.. ++..+++++. ....+|.+....-. ......+|.. .. .|..|.
T Consensus 413 ~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~---e~~~iWhy~~pK~~s~l~~~k~rkegr-~h-~Ddtp~ 486 (1189)
T KOG2041|consen 413 RVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASE---ERYFIWHYVLPKFNSVLAGVKIRKEGR-FH-GDDTPE 486 (1189)
T ss_pred ceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEecc---ccEEEEEEeccchhhhhhhhhhccccc-cc-CCCCcc
Confidence 0011000000 00 0011221 1111 3344444444 46667765432100 0001111211 01 122221
Q ss_pred cccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCC
Q 000992 505 LLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNG 584 (1196)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~ 584 (1196)
-.....-...-++..+...+|.+++-+ .+.+.+....|.|+.|+.+.. ....+.|-.|.-.
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv-------~l~n~y~~n~~~y--------- 547 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNV-------VLTNSYPVNPSIY--------- 547 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecce-------eeeeccccCchhe---------
Confidence 100000111123445667788888753 466778889999999975430 1111233322211
Q ss_pred CCccEEEEEcCCCceEeCCEEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccc
Q 000992 585 PLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRK 664 (1196)
Q Consensus 585 ~~~~~~~gL~~~~~L~~n~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (1196)
.++=||+|=. |......+.+-|.+|.- .+..-++
T Consensus 548 --------------------~~~lNCnstR------------lAiId~~gv~tf~dLd~-d~~g~ql------------- 581 (1189)
T KOG2041|consen 548 --------------------SIKLNCNSTR------------LAIIDLVGVVTFQDLDY-DFDGDQL------------- 581 (1189)
T ss_pred --------------------eEeeccCcch------------hhhhhhhceeeeeeccc-ccCccee-------------
Confidence 2334555422 22222334444444420 0000000
Q ss_pred cccccccccccCCCEEEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeeccc
Q 000992 665 EENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCG 744 (1196)
Q Consensus 665 ~~~de~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~ 744 (1196)
. - .-.+||- =|=.+.- +++--.-|.+|.|.|+ .+++-|.
T Consensus 582 --~-~-~~~~err--DVWd~~W--------------------------------a~dNp~llAlmeKtrm---yifrgnd 620 (1189)
T KOG2041|consen 582 --K-L-IYTSERR--DVWDYEW--------------------------------AQDNPNLLALMEKTRM---YIFRGND 620 (1189)
T ss_pred --e-e-eehhhhh--hhhhhhh--------------------------------ccCCchHHhhhhhceE---EEecCcC
Confidence 0 0 0011221 0111100 1111234557778886 4566552
Q ss_pred HHHHHHhHHHHHHhcCCcchHHHHHhhccCCccccc--ccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHH
Q 000992 745 WQAFLQSASEFVRQVNNLSYITEFVCAINNENITET--LYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKA 822 (1196)
Q Consensus 745 p~~F~~~~~~Fv~qv~~~~~l~lFls~L~~edvt~t--~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~ 822 (1196)
| .+++.-.-||++| ||.-.| +-.+- +..|+ ..+ ..--|+..-.++|++
T Consensus 621 p----------eEp~s~sGyIc~F------edLeitsVlld~I--l~~pE-----~pn-------k~~ii~~~ikslrD~ 670 (1189)
T KOG2041|consen 621 P----------EEPSSVSGYICLF------EDLEITSVLLDKI--LLTPE-----NPN-------KTCIIEVMIKSLRDV 670 (1189)
T ss_pred c----------cccccccceEEEe------eceEEEEEEHhhH--hcCcC-----CCC-------cceEEEEEehhhhhH
Confidence 5 3567777788876 221110 00000 10010 000 000111111223332
Q ss_pred HhhcCCCCCCchhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhcc
Q 000992 823 LEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLY 902 (1196)
Q Consensus 823 l~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~y 902 (1196)
+.= +-+. .||+|-+.|.. ...+.. +..|.+.||-..
T Consensus 671 ~~L----------------ve~v--gledA~qfiEd-------------nPHprL-------------WrllAe~Al~Kl 706 (1189)
T KOG2041|consen 671 MNL----------------VEAV--GLEDAIQFIED-------------NPHPRL-------------WRLLAEYALFKL 706 (1189)
T ss_pred HHH----------------HHHh--chHHHHHHHhc-------------CCchHH-------------HHHHHHHHHHHH
Confidence 210 0001 14555444320 001111 344567777666
Q ss_pred ChhHHHHHHHHhcCCcchh--hHHHHHHhcC-ChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHH
Q 000992 903 DLNLAAIVALNSQRDPKEF--LPYLQELESM-PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLG 979 (1196)
Q Consensus 903 D~~lal~vAq~sq~DpkeY--lpfL~~L~~l-~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~A 979 (1196)
+|+ .|++|+..+++| +.|+++|+.+ .+..||++|-.|.|+||+|.+.|.++ +|.|.|++++++. +.|.+.
T Consensus 707 ~l~----tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~--drrDLAielr~kl-gDwfrV 779 (1189)
T KOG2041|consen 707 ALD----TAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA--DRRDLAIELRKKL-GDWFRV 779 (1189)
T ss_pred hhh----hHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc--chhhhhHHHHHhh-hhHHHH
Confidence 655 479999999999 9999999999 78899999999999999999999998 7799999999999 999999
Q ss_pred Hhhc-C-----CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHH
Q 000992 980 LKLI-T-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLA 1053 (1196)
Q Consensus 980 L~L~-~-----d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~ 1053 (1196)
++|+ . |++......+..|+|+.+..+|++|+.+|.++|+.+.-++||++..++.++..+|+.++.+ .+++
T Consensus 780 ~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~----s~ll 855 (1189)
T KOG2041|consen 780 YQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPED----SELL 855 (1189)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcc----cchH
Confidence 9999 2 5567888999999999999999999999999999999999999999999999999998744 4688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchh
Q 000992 1054 QELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 1108 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL 1108 (1196)
..+|+.|.+.|++++|.++|++ .++++.|+..|+..++|.+|+.||..|..|++
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr-~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR-RSLPKAAVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 8999999999999999999999 99999999999999999999999999987764
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=299.61 Aligned_cols=319 Identities=13% Similarity=0.112 Sum_probs=246.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+..|.|++..|.++|.|..+..||+ .+..- ..| .++| ...|.+|+|+|||+.||+|+.||+|.+
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~--~TeTp---~~t----~KgH----~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDL--DTETP---LFT----CKGH----KNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeecc--CCCCc---cee----ecCC----ccEEEEEEECCCcchhhccccCCeEEE
Confidence 7899999999999999999999999999 44322 122 4556 368999999999999999999999999
Q ss_pred EECCCCeEE--EeeeecCcEEEEEE-----CCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGNATE--VVGRVEGGVRFISP-----SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~aw-----SPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
||+.+++.. .+..|..+|++++| .|.+.+||+++.||+|+||+. ..+.++.... +|..
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~----~~~~~~~~ls-----------gHT~ 248 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT----KLGTCVRTLS-----------GHTA 248 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc----cCceEEEEec-----------cCcc
Confidence 999887543 45557999999999 678899999999999988753 2323332222 6778
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc-----------CCCCe-------
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM-----------PSGAN------- 236 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws-----------PdG~~------- 236 (1196)
.|.+|.|-++| ++. ++| .||+||||+...|.+..++.+|..+|+.|+.| |.|+.
T Consensus 249 ~VTCvrwGG~g-liy-SgS------~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 249 SVTCVRWGGEG-LIY-SGS------QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred ceEEEEEcCCc-eEE-ecC------CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 89999999999 566 566 57999999999999999999999999999877 44554
Q ss_pred ------------------EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcce
Q 000992 237 ------------------IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDS 298 (1196)
Q Consensus 237 ------------------IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~ 298 (1196)
++|+++| .++.+|+.+-...-.-.+ ..|..-|+.+.|||||+++|+++-|. .
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd------~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDk---S 390 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDD------FTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDK---S 390 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCC------ceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeeccc---c
Confidence 9999986 469999865322110011 22456799999999999999999999 9
Q ss_pred EEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
|+||+...++. + ..++.|-.....++|+.|..+ |..++ .+++|++|.++..-
T Consensus 391 VkLW~g~tGk~-l-asfRGHv~~VYqvawsaDsRL-lVS~S-------------------------kDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 391 VKLWDGRTGKF-L-ASFRGHVAAVYQVAWSADSRL-LVSGS-------------------------KDSTLKVWDVRTKK 442 (480)
T ss_pred eeeeeCCCcch-h-hhhhhccceeEEEEeccCccE-EEEcC-------------------------CCceEEEEEeeeee
Confidence 99999887652 2 234444333467888887753 33322 34467777766432
Q ss_pred CCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 379 MPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 379 vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+ . +.+ +|.+.|.+|.||||| +.+|+++.|..++||.
T Consensus 443 l----~-~DLpGh~DEVf~vDwspDG--~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 L----K-QDLPGHADEVFAVDWSPDG--QRVASGGKDKVLRLWR 479 (480)
T ss_pred e----c-ccCCCCCceEEEEEecCCC--ceeecCCCceEEEeec
Confidence 2 1 233 488999999999999 9999999999999995
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=290.39 Aligned_cols=314 Identities=14% Similarity=0.153 Sum_probs=235.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
++.|.+++|+|+|..||+|+.|.|+++||++|... -+...|...|.|++|||||+.||+|+.||+|.+|+ |.++.
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd----pktg~ 190 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD----PKTGQ 190 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec----CCCCC
Confidence 46899999999999999999999999999998543 34555799999999999999999999999998865 43333
Q ss_pred ecccccCccccccCccccCCCCeEEEEEc-----cCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEE
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWR-----GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWs-----pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sl 228 (1196)
+... .|.+|...|++++|- |.+++|| +++ .|+.+||||...|.++.++.+|...|.++
T Consensus 191 ~~g~----------~l~gH~K~It~Lawep~hl~p~~r~la-s~s------kDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 191 QIGR----------ALRGHKKWITALAWEPLHLVPPCRRLA-SSS------KDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred cccc----------cccCcccceeEEeecccccCCCcccee-ccc------CCCCEEEEEccCceEEEEeccCccceEEE
Confidence 3221 233666777999995 5888999 565 57999999998889999999999999999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEc-----------cCC------------
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWN-----------CMS------------ 284 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWS-----------pDg------------ 284 (1196)
.|--+| +|+|+|.|. +|++|+.+ |..-. +|++| ..+|+.|+.| |-|
T Consensus 254 rwGG~g-liySgS~Dr------tIkvw~a~dG~~~r--~lkGH-ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 254 RWGGEG-LIYSGSQDR------TIKVWRALDGKLCR--ELKGH-AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred EEcCCc-eEEecCCCc------eEEEEEccchhHHH--hhccc-chheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 998887 899999874 69999854 32222 23333 4589988888 223
Q ss_pred -------------CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEE
Q 000992 285 -------------DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW 351 (1196)
Q Consensus 285 -------------~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~ 351 (1196)
+.|++++.|. ++-||+-...+-- +.....|+.-...+.||||+.. ++.++-|..
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~---tlflW~p~~~kkp-i~rmtgHq~lVn~V~fSPd~r~-IASaSFDkS-------- 390 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDF---TLFLWNPFKSKKP-ITRMTGHQALVNHVSFSPDGRY-IASASFDKS-------- 390 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCc---eEEEecccccccc-hhhhhchhhheeeEEECCCccE-EEEeecccc--------
Confidence 4599999999 9999986543210 0112244444478999999864 444443322
Q ss_pred eeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcccc
Q 000992 352 TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED 430 (1196)
Q Consensus 352 ~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~ 430 (1196)
+++|.-+.+. ...++ +|-+.|..|+||.|. ..|++++.|.|+++|++.+......
T Consensus 391 -----------------VkLW~g~tGk-----~lasfRGHv~~VYqvawsaDs--RLlVS~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 391 -----------------VKLWDGRTGK-----FLASFRGHVAAVYQVAWSADS--RLLVSGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred -----------------eeeeeCCCcc-----hhhhhhhccceeEEEEeccCc--cEEEEcCCCceEEEEEeeeeeeccc
Confidence 2333222111 11233 377889999999999 8999999999999999988666555
Q ss_pred ccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecC
Q 000992 431 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 431 ~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1196)
+.|+ .+.|..+-|+|||..+++++.+
T Consensus 447 LpGh------------~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 447 LPGH------------ADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred CCCC------------CceEEEEEecCCCceeecCCCc
Confidence 6654 5789999999999999876653
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.7e-29 Score=275.95 Aligned_cols=278 Identities=15% Similarity=0.127 Sum_probs=219.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
..|....||+|++.||++|=+|++++|+..+.. +..+-+|.+.|.++.|+|. +..||+++.||+|++|.-+ .+
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~----~e 251 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS----QE 251 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC----CC
Confidence 568889999999999999999999999998753 3345557899999999998 7799999999999887543 33
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.++... .+|...|..++|.|+|+||+ ++++ |.+-|+||..++..+-..|+|+..|.+|+|.|
T Consensus 252 ~~l~~l-----------~gH~~RVs~VafHPsG~~L~-Tasf------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 252 TPLQDL-----------EGHLARVSRVAFHPSGKFLG-TASF------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQP 313 (459)
T ss_pred cchhhh-----------hcchhhheeeeecCCCceee-eccc------ccchhhcccccchhhHhhcccccccceeEecC
Confidence 333332 36777899999999999999 5764 68999999999988888899999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
||.++|||+-|. .=++|| |.|.. ...|.+ |...|.+|+|||+|..||+++.|. ++++||+....-
T Consensus 314 DGSL~~tGGlD~------~~RvWDlRtgr~--im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~~-- 379 (459)
T KOG0272|consen 314 DGSLAATGGLDS------LGRVWDLRTGRC--IMFLAG-HIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRSE-- 379 (459)
T ss_pred CCceeeccCccc------hhheeecccCcE--EEEecc-cccceeeEeECCCceEEeecCCCC---cEEEeeeccccc--
Confidence 999999999874 356798 44432 223444 456899999999999999999999 999999874321
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cC
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KF 390 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~ 390 (1196)
...+..|.+-+..|.++|+.+.-|...+-| +++++|.-..|. +.+++ +|
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-------------------------~t~kiWs~~~~~-----~~ksLaGH 429 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYD-------------------------NTVKIWSTRTWS-----PLKSLAGH 429 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccC-------------------------cceeeecCCCcc-----cchhhcCC
Confidence 234555555557899999666534443323 345555444332 22455 59
Q ss_pred CCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 391 PTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 391 ~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
.+.|.+|+.|||+ +.+++++.|.+++||.
T Consensus 430 e~kV~s~Dis~d~--~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPDS--QAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccCC--ceEEEeccCceeeecc
Confidence 9999999999999 9999999999999996
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=1.8e-24 Score=244.09 Aligned_cols=450 Identities=12% Similarity=0.096 Sum_probs=292.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
...-+..|+-+|.+.-++..+ ++.-++ .+... +.+ ..+| ...++-..|||.|.++|+|-..|+|+|
T Consensus 20 ~~~~ig~dpkgd~ilY~nGks-v~ir~i--~~~~~-~~i------YtEH----~~~vtVAkySPsG~yiASGD~sG~vRI 85 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTNGKS-VIIRNI--DNPAS-VDI------YTEH----AHQVTVAKYSPSGFYIASGDVSGKVRI 85 (603)
T ss_pred cceEeccCCCCCeEEEeCCCE-EEEEEC--CCccc-eee------eccc----cceeEEEEeCCCceEEeecCCcCcEEE
Confidence 556678899988877777666 554455 22221 112 3445 246888899999999999999999999
Q ss_pred EECCCC-e-EE-EeeeecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceeeeeeccccc-------Cccc----
Q 000992 102 HSVDGN-A-TE-VVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELA-------EGFD---- 163 (1196)
Q Consensus 102 w~~~~~-~-~e-~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~~~~l~~~~-------~~~~---- 163 (1196)
|+.... . +. .+.-+.++|..++|++||++||.+++- |.+.+|+. +..+-++..|... .+.+
T Consensus 86 Wdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS-G~SvGei~GhSr~ins~~~KpsRPfRi~ 164 (603)
T KOG0318|consen 86 WDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS-GNSVGEITGHSRRINSVDFKPSRPFRIA 164 (603)
T ss_pred EeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC-CCccceeeccceeEeeeeccCCCceEEE
Confidence 998652 2 22 455567899999999999999988653 34555642 3333333322221 1111
Q ss_pred -------cc---cC------ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec---cCCCc
Q 000992 164 -------VH---EP------ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE---LKAFM 224 (1196)
Q Consensus 164 -------Vs---~t------qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e---~~~~~ 224 (1196)
|. -. .|+.|..-|.++.|||||.+|||++ .|++|.+||-.+|+....++ +|.|.
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g-------sDgki~iyDGktge~vg~l~~~~aHkGs 237 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG-------SDGKIYIYDGKTGEKVGELEDSDAHKGS 237 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec-------CCccEEEEcCCCccEEEEecCCCCcccc
Confidence 11 11 1226888999999999999999544 37999999999999999887 89999
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
+.+|+||||++.+++++.|+ ++++|+.+- ....+|.+...-+..-..+-|- ...|.+.+.++ +|-+.+
T Consensus 238 IfalsWsPDs~~~~T~SaDk------t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G---~in~ln 306 (603)
T KOG0318|consen 238 IFALSWSPDSTQFLTVSADK------TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSG---TINYLN 306 (603)
T ss_pred EEEEEECCCCceEEEecCCc------eEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCc---EEEEec
Confidence 99999999999999999976 599999653 3344444432222334456686 66788888888 899999
Q ss_pred ecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee----------------cCC-CeeEEEEcC
Q 000992 304 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA----------------VME-NSTALVIDG 366 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~----------------~~d-~~~v~viDg 366 (1196)
.++.. ..+.+..|....+.+.-+|++ .+|..++-+|.+..++..-..+ ..+ ..+..+.=+
T Consensus 307 ~~d~~--~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 307 PSDPS--VLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred ccCCC--hhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 88765 234555655555777778877 4466666667654322110000 000 111111112
Q ss_pred CEEEEeecccc------------------CCCCCc-----ee------------eeecCCCCEEEEEEecCCCCCEEEEE
Q 000992 367 SKILVTPLSLS------------------LMPPPM-----YL------------FSLKFPTAVTEMAFYSKSSKNCLAAI 411 (1196)
Q Consensus 367 ~~l~lt~l~~~------------------~vpppm-----~~------------~~l~~~~~V~~Vafspdg~~~~lAs~ 411 (1196)
++|++.++... ..++.- |. .++...=.+.+||++|++ +.+|++
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--~~vaVG 461 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--SEVAVG 461 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--CEEEEe
Confidence 34455443211 111100 00 000111134689999999 899999
Q ss_pred ECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhh
Q 000992 412 LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQ 491 (1196)
Q Consensus 412 ~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1196)
+.||.|++|.+.+.....+. + ...+...+..++||||+.+||++- .+..+++|++.- .
T Consensus 462 G~Dgkvhvysl~g~~l~ee~-----~-----~~~h~a~iT~vaySpd~~yla~~D--a~rkvv~yd~~s-~--------- 519 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEA-----K-----LLEHRAAITDVAYSPDGAYLAAGD--ASRKVVLYDVAS-R--------- 519 (603)
T ss_pred cccceEEEEEecCCccccee-----e-----eecccCCceEEEECCCCcEEEEec--cCCcEEEEEccc-C---------
Confidence 99999999999864322110 0 013456899999999999999753 346788887621 0
Q ss_pred hhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 492 EIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
| ..-..-.-+.++|..++++| ++..++--+-|-.|+.|+.
T Consensus 520 ~--------------------~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 520 E--------------------VKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred c--------------------eecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEc
Confidence 0 00011122467899999999 8888888889999999964
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.3e-26 Score=256.59 Aligned_cols=339 Identities=15% Similarity=0.181 Sum_probs=233.6
Q ss_pred ceeEEeeecCCCEEE-EEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLF-FASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~-~~s~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
.+..++|+|..+.+| +++.+.....|++.+ ........+..-+-...+........|++++|+-||..||+|+.||.+
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA 259 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence 688999999999555 456688888898842 111110001000000011111124679999999999999999999999
Q ss_pred EEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
+||+.++..+..++.|.++|.++.|+-+|.+|++++-|+++++|+. +++.... ||.-|...-..|
T Consensus 260 riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~----~~g~~~q-----------~f~~~s~~~lDV 324 (524)
T KOG0273|consen 260 RIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA----HTGTVKQ-----------QFEFHSAPALDV 324 (524)
T ss_pred EEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec----cCceEEE-----------eeeeccCCccce
Confidence 9999999999999999999999999999999999999999999763 2222211 122223333679
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
.|..+.+ || +++ .|+.|+|+-...-....++.+|.+.|..+-|.|.|++|||+|+|. ++++|.+.
T Consensus 325 dW~~~~~-F~-ts~------td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~------TlkiWs~~~ 390 (524)
T KOG0273|consen 325 DWQSNDE-FA-TSS------TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG------TLKIWSMGQ 390 (524)
T ss_pred EEecCce-Ee-ecC------CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC------eeEeeecCC
Confidence 9998886 55 344 368999999977778899999999999999999999999999975 69999853
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
+.-.. .|.. +...|..+.|||+|.. .|+|..+..+...
T Consensus 391 ~~~~~--~l~~-Hskei~t~~wsp~g~v---------------------------------------~~n~~~~~~l~sa 428 (524)
T KOG0273|consen 391 SNSVH--DLQA-HSKEIYTIKWSPTGPV---------------------------------------TSNPNMNLMLASA 428 (524)
T ss_pred Ccchh--hhhh-hccceeeEeecCCCCc---------------------------------------cCCCcCCceEEEe
Confidence 21100 1222 2446888888887731 1112122111111
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcE
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v 417 (1196)
. -.++|++|+.. .+.+.+++ .|..+|.+|+|||+| .++|+|+-||.|
T Consensus 429 s-------------------------~dstV~lwdv~-----~gv~i~~f~kH~~pVysvafS~~g--~ylAsGs~dg~V 476 (524)
T KOG0273|consen 429 S-------------------------FDSTVKLWDVE-----SGVPIHTLMKHQEPVYSVAFSPNG--RYLASGSLDGCV 476 (524)
T ss_pred e-------------------------cCCeEEEEEcc-----CCceeEeeccCCCceEEEEecCCC--cEEEecCCCCee
Confidence 1 12234444332 12233445 589999999999999 999999999999
Q ss_pred EEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 418 CVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
.+|+..+....+...| .+.|..++|+-+|..|+++..+ ..+++..+
T Consensus 477 ~iws~~~~~l~~s~~~-------------~~~Ifel~Wn~~G~kl~~~~sd--~~vcvldl 522 (524)
T KOG0273|consen 477 HIWSTKTGKLVKSYQG-------------TGGIFELCWNAAGDKLGACASD--GSVCVLDL 522 (524)
T ss_pred EeccccchheeEeecC-------------CCeEEEEEEcCCCCEEEEEecC--CCceEEEe
Confidence 9999987555433333 3468999999998877766544 45555544
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=8.6e-25 Score=246.66 Aligned_cols=391 Identities=13% Similarity=0.118 Sum_probs=263.2
Q ss_pred ceeEEeeecCCCEEEEEeCCC----cEEEEecccccccc--c--------------ceeeccccc-----cccccCC---
Q 000992 22 ILQFSALDIEQNRLFFASSAN----NIYSAQLSSFQNER--A--------------SIKTAISAE-----IEHIDLE--- 73 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~----~i~~~~~~~~~~~~--~--------------~~~~~~~~~-----l~~~~~~--- 73 (1196)
++.+++||.|+.+|..+.+-. ..+.||..++.++. + +++.|-.++ +.+.||-
T Consensus 105 ~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~ 184 (603)
T KOG0318|consen 105 PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKS 184 (603)
T ss_pred ccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeee
Confidence 788999999999999987632 57899975222221 0 111111111 1111110
Q ss_pred ---C-CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEee---eecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 74 ---P-GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 74 ---~-~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
. ...|.++.|+|||..+|+++.||+|.+||-.+++. -.++ .|+++|.+++||||++.++++|.|.++++|+-
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 0 24699999999999999999999999999887643 3444 68999999999999999999999999999973
Q ss_pred c-CceeeeeecccccCcc------------------ccc---------cCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 146 D-WDLLYENPLEELAEGF------------------DVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 146 ~-~d~~~~~~l~~~~~~~------------------~Vs---------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
. ...+.+..+...-+.+ .++ ..++.+|...|.+++-+|||++|- ++++
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-Sgsy--- 340 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-SGSY--- 340 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE-eecc---
Confidence 2 2333433332221111 111 334558999999999999999999 6764
Q ss_pred cCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC--CC---------------
Q 000992 198 SKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NG--------------- 259 (1196)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--nG--------------- 259 (1196)
|+.|.=|+..+|...+.. ++|...+..++=+-.|.++-++-+| +++.... +|
T Consensus 341 ---DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd-------~l~~~~~~~~~~t~~~~~~lg~QP~~ 410 (603)
T KOG0318|consen 341 ---DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD-------TLRVISLKDNGYTKSEVVKLGSQPKG 410 (603)
T ss_pred ---CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC-------eEEEEecccCcccccceeecCCCcee
Confidence 589999999888766543 6677777777777767766555433 1222210 00
Q ss_pred --------ee--------------EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 260 --------LE--------------RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 260 --------l~--------------~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
.. .+.+.+ +....+..+|.+||++..|+|+.|+ .|+++.++... ++.+...
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~--~~~y~~s~vAv~~~~~~vaVGG~Dg---kvhvysl~g~~--l~ee~~~ 483 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSI--PIGYESSAVAVSPDGSEVAVGGQDG---KVHVYSLSGDE--LKEEAKL 483 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceee--ccccccceEEEcCCCCEEEEecccc---eEEEEEecCCc--ccceeee
Confidence 00 000111 1123467899999999999999999 89999998643 2333222
Q ss_pred --ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEE
Q 000992 318 --LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVT 395 (1196)
Q Consensus 318 --~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~ 395 (1196)
+....+.+++||++.+ |+.+..++.+.. |++.. . .+ ...- |. -|.+.|+
T Consensus 484 ~~h~a~iT~vaySpd~~y-la~~Da~rkvv~----yd~~s-~--~~------~~~~-----------w~----FHtakI~ 534 (603)
T KOG0318|consen 484 LEHRAAITDVAYSPDGAY-LAAGDASRKVVL----YDVAS-R--EV------KTNR-----------WA----FHTAKIN 534 (603)
T ss_pred ecccCCceEEEECCCCcE-EEEeccCCcEEE----EEccc-C--ce------ecce-----------ee----eeeeeEE
Confidence 2223388999999987 677766666543 33320 0 00 1111 11 2778999
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEE
Q 000992 396 EMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYF 475 (1196)
Q Consensus 396 ~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~ 475 (1196)
+|||||++ .++|+++-|.+|.+|+++.|....... ..|...|.++.|..+.+++-++.+ ..+++
T Consensus 535 ~~aWsP~n--~~vATGSlDt~Viiysv~kP~~~i~ik-----------nAH~~gVn~v~wlde~tvvSsG~D---a~iK~ 598 (603)
T KOG0318|consen 535 CVAWSPNN--KLVATGSLDTNVIIYSVKKPAKHIIIK-----------NAHLGGVNSVAWLDESTVVSSGQD---ANIKV 598 (603)
T ss_pred EEEeCCCc--eEEEeccccceEEEEEccChhhheEec-----------cccccCceeEEEecCceEEeccCc---ceeEE
Confidence 99999999 899999999999999998654332222 234557999999999997665555 46788
Q ss_pred EEe
Q 000992 476 RGA 478 (1196)
Q Consensus 476 ~~~ 478 (1196)
|++
T Consensus 599 W~v 601 (603)
T KOG0318|consen 599 WNV 601 (603)
T ss_pred ecc
Confidence 876
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.1e-27 Score=259.91 Aligned_cols=264 Identities=14% Similarity=0.099 Sum_probs=217.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd--~~~La~as~dG~I 99 (1196)
++....|..+++.|.++|=++....|+. .+.+. +.+ |.+| .+.|.++.|+|. +..||+++.||+|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~--~~~~~---~~~----l~gH----~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSV--PQCNL---LQT----LRGH----TSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeec--CCcce---eEE----Eecc----ccceeeEEEccCCCccceeeeccCCce
Confidence 7788889999999999999999999998 55533 222 6777 468999999998 6799999999999
Q ss_pred EEEECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 100 LLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 100 ~lw~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+||+.++. .+..+.+|...|..++|.|+|++|++++-|.+-++ ||.-+...+.... ||+.+|.+
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl----WD~~tk~ElL~QE-----------GHs~~v~~ 308 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL----WDLETKSELLLQE-----------GHSKGVFS 308 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh----cccccchhhHhhc-----------ccccccce
Confidence 99999874 34333346789999999999999999999998755 6665655554443 78888899
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
|+|.|||..++ +++. |..-||||..+|.++..+++|...|.+++|||+|-.||+|+.| .++++|+..
T Consensus 309 iaf~~DGSL~~-tGGl------D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D------nt~kVWDLR 375 (459)
T KOG0272|consen 309 IAFQPDGSLAA-TGGL------DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD------NTCKVWDLR 375 (459)
T ss_pred eEecCCCceee-ccCc------cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC------CcEEEeeec
Confidence 99999999888 5764 5788999999999999999999999999999999999999997 469999965
Q ss_pred CeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 259 GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
+.+. -++++.| .+-|..|.|+| -|.+|++++.|. +++||...+ |.+.+.+..|...+.++.-+|++..
T Consensus 376 ~r~~-ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~---t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 376 MRSE-LYTIPAH-SNLVSQVKYSPQEGYFLVTASYDN---TVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred cccc-ceecccc-cchhhheEecccCCeEEEEcccCc---ceeeecCCC--cccchhhcCCccceEEEEeccCCce
Confidence 4322 2345543 56799999999 789999999999 999999877 5566778877666677888887754
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=236.92 Aligned_cols=293 Identities=14% Similarity=0.176 Sum_probs=217.3
Q ss_pred EeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.+..|.+.|+.++|+|- |..||++++|+.|++|+.. .+.......-.+ +|.-.|.+|+|||.|+||
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~------------~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD------------GHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc------------cchheeeeeeecCCCcEE
Confidence 34456788999999999 9999999999999999754 333222211111 345567999999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD 266 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~ 266 (1196)
| ++|. |.++-||....| ++..++|+|+..|.+++||++|++||++++|+ .|-+||..+ ..+|.
T Consensus 77 a-~aSF------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK------SVWiWe~de--ddEfe 141 (312)
T KOG0645|consen 77 A-SASF------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK------SVWIWEIDE--DDEFE 141 (312)
T ss_pred E-Eeec------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC------eEEEEEecC--CCcEE
Confidence 9 7875 589999988655 57788999999999999999999999999986 499999763 23453
Q ss_pred ec---cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCC
Q 000992 267 IN---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 267 l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.- .+|...|..+.|.|.-.+|++++.|. ||++|... ...|-+.|.|..+.....++.|+|.|. +|...+.++
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~ 217 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDG 217 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCC---eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCc
Confidence 22 34566799999999999999999999 99999987 778989898887655558888998874 356655555
Q ss_pred cEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 343 QITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
.+ ++|-.. +..+..|...+..|+|. +| .||+++.|+.|+||.-
T Consensus 218 tv-------------------------~Iw~~~--------~~~~~~~sr~~Y~v~W~-~~---~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 218 TV-------------------------SIWRLY--------TDLSGMHSRALYDVPWD-NG---VIASGGGDDAIRLFKE 260 (312)
T ss_pred ce-------------------------Eeeeec--------cCcchhcccceEeeeec-cc---ceEeccCCCEEEEEEe
Confidence 44 333321 11122367789999999 66 8999999999999987
Q ss_pred CCCCccccccCCceeeeeecccccCCcEEEEEEecC-CeEEEEEecCCCCceEEEEe
Q 000992 423 PAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGS-HLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d-~~lla~~~~~~~~~~~~~~~ 478 (1196)
+.. ..++.+.+.......|...|.++.|.|. ..+|++++++ ..+.+|.+
T Consensus 261 s~~-----~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD--G~v~~W~l 310 (312)
T KOG0645|consen 261 SDS-----PDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD--GIVNFWEL 310 (312)
T ss_pred cCC-----CCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC--ceEEEEEe
Confidence 631 1112222111111245558999999993 5568888776 57777765
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4.6e-23 Score=240.54 Aligned_cols=448 Identities=14% Similarity=0.123 Sum_probs=321.1
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
.++|++||..|++-..+. +..+|+ .++.+ -|+| +.....|..++.||+|..|.+.-+.|...+.+.
T Consensus 19 nl~ft~dG~sviSPvGNr-vsv~dL--knN~S----~Tl~-------~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~ 84 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNR-VSVFDL--KNNKS----YTLP-------LETRYNITRIALSPDGTLLLAVDERGRALLVSL 84 (893)
T ss_pred cEEECCCCCEEEeccCCE-EEEEEc--cCCcc----eeEE-------eecCCceEEEEeCCCceEEEEEcCCCcEEEEec
Confidence 478999999998876665 778888 33332 1222 223467999999999999999999999999987
Q ss_pred CCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 105 DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
....+---=+...+|-|+.|||||+.+|++.+. -+.+|.. ...+.+ .+.+.. -...|.+|.+.+.+|.||-|
T Consensus 85 ~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn-~lqiw~~-P~~~~~-~~~pFv-----l~r~~~g~fddi~si~Ws~D 156 (893)
T KOG0291|consen 85 LSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGN-LLQIWHA-PGEIKN-EFNPFV-----LHRTYLGHFDDITSIDWSDD 156 (893)
T ss_pred ccceeeEEEeecCccceEEECCCCcEEEEEecc-eeEEEec-Ccchhc-ccCcce-----EeeeecCCccceeEEEeccC
Confidence 653221111357899999999999999998875 6778742 222221 111111 01234478899999999999
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC----
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---- 258 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n---- 258 (1196)
.++|+ +++ .|.+.|||+.+.-+ ....+.+|.+.|-+.-|..+..-|.+.+.|+ .+-.|+-+
T Consensus 157 Sr~l~-~gs------rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG------~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 157 SRLLV-TGS------RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDG------ALFVWTCDLRPP 223 (893)
T ss_pred CceEE-ecc------ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCc------eEEEEEecCCCc
Confidence 99999 676 57999999984322 2456778999999999999999999988864 46667543
Q ss_pred --------------------Cee--EEEEE--ec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 259 --------------------GLE--RSSFD--IN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 259 --------------------Gl~--~~~f~--l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
|.. |.-|- ++ ......|.+.+|++-..+||++-..+ ...|+.+....
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG---~f~LyelP~f~-- 298 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG---EFGLYELPDFN-- 298 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC---eeEEEecCCce--
Confidence 211 11111 11 12236799999999999999999998 77899887653
Q ss_pred EEEEEEEecCCcEEEEEccCCCceEEEEec-CCcEEEEEEEEeee-----------------cCCCeeEEEEcCCEEEEe
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTA-----------------VMENSTALVIDGSKILVT 372 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~-----------------~~d~~~v~viDg~~l~lt 372 (1196)
+.+.+.........+.|+..|.. |++++. -|++.+|+|.-..- |+++-+++..|+++|++|
T Consensus 299 lih~LSis~~~I~t~~~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEEeecccceeeEEEecccCCE-EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 56667665444578899988876 677764 36777777653211 455566777888899988
Q ss_pred eccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCcee--------------
Q 000992 373 PLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFV-------------- 437 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~-------------- 437 (1196)
+.. ...|..++ +|.+.|..|.|+..| +.+.+.+-||+|+.||+..-.+..++.++...
T Consensus 378 n~~-----SgfC~vTFteHts~Vt~v~f~~~g--~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 378 NTQ-----SGFCFVTFTEHTSGVTAVQFTARG--NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred ecc-----CceEEEEeccCCCceEEEEEEecC--CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 764 45788888 599999999999999 99999999999999998653332222221111
Q ss_pred ---------eee-e--------cccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhccc
Q 000992 438 ---------VEA-C--------ISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSE 499 (1196)
Q Consensus 438 ---------~~~-~--------~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1196)
+.. + .+.+|-+.|..++|+|++..||+++.+ .++.+|++-- .
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~if~-s----------------- 510 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDIFS-S----------------- 510 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEeec-c-----------------
Confidence 000 0 013466689999999999999999988 6899998720 0
Q ss_pred ccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccc
Q 000992 500 DHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRV 554 (1196)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~ 554 (1196)
.+ .....++...|..++++| +++.+++.+.||.+-.|+...
T Consensus 511 ---------~~----~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 511 ---------SG----TVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred ---------Cc----eeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhh
Confidence 00 122466778899999999 999999999999999997643
No 15
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-23 Score=240.17 Aligned_cols=235 Identities=12% Similarity=0.158 Sum_probs=193.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
.++|-+|.++|.-..+..+.-+|+|.|||.+++.+ ....-.+-+|+++.|=+--+++++|+.|..|++++- ..+.+
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-- 90 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-- 90 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee--
Confidence 46899999999999999999999999999998643 344444678999999999999999999999998762 12222
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
.+|.+|++-+.+|+-.|.--|+. ++| .|-+||+||-+.+ .+.+++|+|...|..|+|.
T Consensus 91 --------------~~FeAH~DyIR~iavHPt~P~vL-tsS------DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 91 --------------KTFEAHSDYIRSIAVHPTLPYVL-TSS------DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred --------------EEeeccccceeeeeecCCCCeEE-ecC------CccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 25778999999999999999999 565 4789999998433 5778999999999999999
Q ss_pred C-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC--CeeEEEEccCCcceEEEEEecCCE
Q 000992 232 P-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 232 P-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg--~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
| |-+.+||++-|. +|++|.. |..+-.|+|.+| +..|+.|.+=|-| .+|.+|+.|. +|++||.+|-.
T Consensus 150 PkD~ntFaS~sLDr------TVKVWsl-gs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~---tiKvWDyQtk~ 218 (794)
T KOG0276|consen 150 PKDPNTFASASLDR------TVKVWSL-GSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDL---TIKVWDYQTKS 218 (794)
T ss_pred CCCccceeeeeccc------cEEEEEc-CCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCc---eEEEeecchHH
Confidence 9 568999999975 6999986 445667888854 5679999997755 5999999999 99999988743
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
+.|++..|.+....+.|||+-|. +..++.||++.+
T Consensus 219 --CV~TLeGHt~Nvs~v~fhp~lpi-iisgsEDGTvri 253 (794)
T KOG0276|consen 219 --CVQTLEGHTNNVSFVFFHPELPI-IISGSEDGTVRI 253 (794)
T ss_pred --HHHHhhcccccceEEEecCCCcE-EEEecCCccEEE
Confidence 24678887777788999999986 677777888765
No 16
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.6e-23 Score=244.19 Aligned_cols=433 Identities=14% Similarity=0.113 Sum_probs=306.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.++..+.|...+....++.-.++..||+ -+++....+.++.. ...|+++.=+||.-.||+|.+||.|+|
T Consensus 23 N~~~~~~~~~~Gr~va~~a~E~vn~Wdl--Rtge~~~~l~~~~~---------k~evt~l~~~~d~l~lAVGYaDGsVqi 91 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAVSALEQVNIWDL--RTGEIEKKLILLKK---------KAEVTCLRSSDDILLLAVGYADGSVQI 91 (888)
T ss_pred ceeEEEeecCCCcEEEEeccccEeEEee--ecchhhhhhhhhcc---------cceEEEeeccCCcceEEEEecCceEEe
Confidence 6677778865555555555556999999 66654323221110 136889988999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+..++.+. ....|...|+++.|+-+|..||+||.|+.|++|+ .+.|.-+-. .++|.+.++..-
T Consensus 92 f~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwD----lV~E~Gl~r-----------L~GHkd~iT~~~ 156 (888)
T KOG0306|consen 92 FSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWD----LVGEEGLFR-----------LRGHKDSITQAL 156 (888)
T ss_pred eccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEE----eccceeeEE-----------eecchHHHhHHh
Confidence 999876443 4445799999999999999999999999999864 444433322 226777778888
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC---
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--- 257 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--- 257 (1196)
|..+..+++|+ + .|.+||+||.++-.+..+.-.|.+.++.+++.+ -.+++.+ .+ ..+.+|+.
T Consensus 157 F~~~~~~lvS~-s------KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~-~d------se~~v~~L~~~ 221 (888)
T KOG0306|consen 157 FLNGDSFLVSV-S------KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAG-TD------SELKVWELAFE 221 (888)
T ss_pred ccCCCeEEEEe-c------cCceEEEEecccceeeeEEecccceEEEEEEec-ceEEEEe-cC------CceEEEEeecc
Confidence 88877777743 3 479999999988888888877888888888887 2223322 21 11222221
Q ss_pred --------------------------------------------------------------------------------
Q 000992 258 -------------------------------------------------------------------------------- 257 (1196)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (1196)
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence
Q ss_pred -----------------------------CCeeEEE-----------EEec-----------------cCCCCcEEEEEE
Q 000992 258 -----------------------------NGLERSS-----------FDIN-----------------EQIDSTVELLKW 280 (1196)
Q Consensus 258 -----------------------------nGl~~~~-----------f~l~-----------------~~~~~~V~~laW 280 (1196)
.+..... +.++ ..|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0000000 0000 112346889999
Q ss_pred ccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEE-----------
Q 000992 281 NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF----------- 349 (1196)
Q Consensus 281 SpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~----------- 349 (1196)
|.|+.++++++.+. |+||++.+..... ++ .........|=|-+ ..+.+++.+|.+..++.
T Consensus 382 S~d~~~~~Sga~~S----ikiWn~~t~kciR--Ti--~~~y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 382 SSDSILLASGAGES----IKIWNRDTLKCIR--TI--TCGYILASKFVPGD-RYIVLGTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred ecCceeeeecCCCc----EEEEEccCcceeE--Ee--ccccEEEEEecCCC-ceEEEeccCCceEEEEeehhhhhhhhhc
Confidence 99999999998775 9999999764321 22 22233666777755 45888888898776554
Q ss_pred ----EEeee--cCCCeeEEEEcCCEEEEeeccccCC-CCCce-------eeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 350 ----IWTTA--VMENSTALVIDGSKILVTPLSLSLM-PPPMY-------LFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 350 ----~~~~~--~~d~~~v~viDg~~l~lt~l~~~~v-pppm~-------~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
.|+++ |++.+.+.+..++++++|+|..-.- |-... .+++++++.|.+|++|||| ..||++.-|+
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdn 530 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDN 530 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccC
Confidence 47777 7888999999999999999975433 32221 1567889999999999999 9999999999
Q ss_pred cEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhh
Q 000992 416 CLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIEL 495 (1196)
Q Consensus 416 ~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1196)
||++|-+++-.-.-.+.||. -.|.++--+||+.++++++.+ .++++|-+++..
T Consensus 531 TVkVyflDtlKFflsLYGHk------------LPV~smDIS~DSklivTgSAD--KnVKiWGLdFGD------------- 583 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGHK------------LPVLSMDISPDSKLIVTGSAD--KNVKIWGLDFGD------------- 583 (888)
T ss_pred eEEEEEecceeeeeeecccc------------cceeEEeccCCcCeEEeccCC--CceEEeccccch-------------
Confidence 99999998744333445553 358888889999999999887 578899876633
Q ss_pred hcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 496 ACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
|. ++...++..|..+.+-| ...-++....||+|-.|+.
T Consensus 584 -CH-----------------KS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 584 -CH-----------------KSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred -hh-----------------hhhhcccCceeEEEEcc-cceeEEEecCcceEEeech
Confidence 11 22355667788888777 5666667899999999975
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.8e-25 Score=231.32 Aligned_cols=282 Identities=15% Similarity=0.157 Sum_probs=206.4
Q ss_pred CCEEEEEEccC-CCEEEEEECCCcEEEEECCC-CeEE----EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc---
Q 000992 76 DSITAFDYLME-KEALIVGTSSGLLLLHSVDG-NATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD--- 146 (1196)
Q Consensus 76 ~~v~~v~~spd-~~~La~as~dG~I~lw~~~~-~~~e----~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~--- 146 (1196)
+++.+++|+|- |..||+++.|..|++|+..+ .... +-+.|...|+.+||||.|++||+||-|.++.+|.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 68999999999 89999999999999999984 2222 335678999999999999999999999999999754
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCC
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAF 223 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~ 223 (1196)
|+.+..+. ||.+.|-+++||++|.|||| .+ .|+.|-||...++ ++.+.+++|..
T Consensus 95 fecv~~lE----------------GHEnEVK~Vaws~sG~~LAT-CS------RDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 95 FECVATLE----------------GHENEVKCVAWSASGNYLAT-CS------RDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred eeEEeeee----------------ccccceeEEEEcCCCCEEEE-ee------CCCeEEEEEecCCCcEEEEeeeccccc
Confidence 44433332 67788999999999999995 44 4789999998644 46778899999
Q ss_pred ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-Cee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEE
Q 000992 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~l 301 (1196)
-|..+.|+|.-.+|+|+|.| ++|++|... +.- .-..+|.+ +++.|++++|+|+|..|++++.|+ +|+|
T Consensus 152 DVK~V~WHPt~dlL~S~SYD------nTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F~~~G~rl~s~sdD~---tv~I 221 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYD------NTIKVYRDEDDDDWECVQTLDG-HENTVWSLAFDNIGSRLVSCSDDG---TVSI 221 (312)
T ss_pred cccEEEEcCCcceeEEeccC------CeEEEEeecCCCCeeEEEEecC-ccceEEEEEecCCCceEEEecCCc---ceEe
Confidence 99999999999999999997 469999764 211 00113333 356899999999999999999999 9999
Q ss_pred EEecCCEEEEEEEEEE-ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 302 CFFSNNHWYLKYEIRY-LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 302 W~~~n~~wylkq~l~~-~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
|..-. .+.. +......+.|. ++ .|+.+.+|+.+..+.-. ..| |+....+
T Consensus 222 w~~~~-------~~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s--~~~---------d~p~~~l--------- 271 (312)
T KOG0645|consen 222 WRLYT-------DLSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKES--DSP---------DEPSWNL--------- 271 (312)
T ss_pred eeecc-------CcchhcccceEeeeec-cc--ceEeccCCCEEEEEEec--CCC---------CCchHHH---------
Confidence 98321 1111 11112558888 33 25666556555432211 001 1111110
Q ss_pred CCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 381 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 381 ppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.......|...|++|.|.|... ++|++++.||+|++|.+.
T Consensus 272 --~~~~~~aHe~dVNsV~w~p~~~-~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 272 --LAKKEGAHEVDVNSVQWNPKVS-NRLASGGDDGIVNFWELE 311 (312)
T ss_pred --HHhhhcccccccceEEEcCCCC-CceeecCCCceEEEEEec
Confidence 0011223777899999999532 799999999999999874
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=4.5e-23 Score=240.62 Aligned_cols=473 Identities=12% Similarity=0.039 Sum_probs=307.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++.|.|++..+.++.+.- +-.|......++ +.+-=.+.....++ .+.|++|.|+.|++.|++++.|-+++|
T Consensus 98 ~v~~i~fSPng~~fav~~gn~-lqiw~~P~~~~~-~~~pFvl~r~~~g~----fddi~si~Ws~DSr~l~~gsrD~s~rl 171 (893)
T KOG0291|consen 98 GVGAIKFSPNGKFFAVGCGNL-LQIWHAPGEIKN-EFNPFVLHRTYLGH----FDDITSIDWSDDSRLLVTGSRDLSARL 171 (893)
T ss_pred ccceEEECCCCcEEEEEecce-eEEEecCcchhc-ccCcceEeeeecCC----ccceeEEEeccCCceEEeccccceEEE
Confidence 678889999988777776554 666776422221 11100001111222 478999999999999999999999999
Q ss_pred EECCCCe---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc------------Cc---cc
Q 000992 102 HSVDGNA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA------------EG---FD 163 (1196)
Q Consensus 102 w~~~~~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~------------~~---~~ 163 (1196)
|..+..+ ....++|.+.|.+.-|+.|...|.+++.||.+.+|+.+-.|.....-..+. +. +.
T Consensus 172 ~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~ 251 (893)
T KOG0291|consen 172 FGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKI 251 (893)
T ss_pred EEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcce
Confidence 9987632 345666899999999999999999999999999998653332211110000 00 00
Q ss_pred cc---cCccc-cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 164 VH---EPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 164 Vs---~tqf~-~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
+. ...|- .....+.+.+|.+--..|| ++. ..+.+.+|..-+=.++..+.-.+..+..++|+..|.+||.
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv-vgF------ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~ 324 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTNLLV-VGF------SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAF 324 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCceEEE-EEe------cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEE
Confidence 00 00011 2236788999999999999 776 3478899998555666666545577899999999999999
Q ss_pred EecCCCCCCCCeEEEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 240 VYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
++.. -..+.+||.. ...|.++.+ |-..+.++++||||+++|+|++|+ .|++|++...-+. .++.-|
T Consensus 325 g~~k-----lgQLlVweWq---sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg---KVKvWn~~SgfC~--vTFteH 391 (893)
T KOG0291|consen 325 GCSK-----LGQLLVWEWQ---SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG---KVKVWNTQSGFCF--VTFTEH 391 (893)
T ss_pred cCCc-----cceEEEEEee---ccceeeeccccccceeeEEECCCCcEEEeccCCC---cEEEEeccCceEE--EEeccC
Confidence 9875 3468889853 334566632 356799999999999999999999 8999999875432 233323
Q ss_pred cCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee------cCCCee----------EEEE---cCCEEEEeeccccCC
Q 000992 319 RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------VMENST----------ALVI---DGSKILVTPLSLSLM 379 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~------~~d~~~----------v~vi---Dg~~l~lt~l~~~~v 379 (1196)
...++.+.|+..+.- +...+.||++..+++..-.+ |.+... +..+ |-=.|.+|.+..+..
T Consensus 392 ts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 233488999998764 66677799998766542111 222211 1111 222478888876543
Q ss_pred CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC
Q 000992 380 PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 459 (1196)
Q Consensus 380 pppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~ 459 (1196)
-.-++ +|.+||.+++|+|+| +.||+++.|.||++|+.-..... .. ++. ....+..++|.|||
T Consensus 471 lDiLs----GHEgPVs~l~f~~~~--~~LaS~SWDkTVRiW~if~s~~~--vE--tl~--------i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 471 LDILS----GHEGPVSGLSFSPDG--SLLASGSWDKTVRIWDIFSSSGT--VE--TLE--------IRSDVLAVSFRPDG 532 (893)
T ss_pred eehhc----CCCCcceeeEEcccc--CeEEeccccceEEEEEeeccCce--ee--eEe--------eccceeEEEEcCCC
Confidence 22221 589999999999999 89999999999999998532111 00 011 12368899999999
Q ss_pred eEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEE
Q 000992 460 LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAF 539 (1196)
Q Consensus 460 ~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 539 (1196)
+-||++.-+ .++.+|+..... +-..+.++-|..++-. ....++..+ -........++.++ |++.++
T Consensus 533 ~elaVaTld--gqItf~d~~~~~--------q~~~IdgrkD~~~gR~--~~D~~ta~~-sa~~K~Ftti~ySa-DG~~Il 598 (893)
T KOG0291|consen 533 KELAVATLD--GQITFFDIKEAV--------QVGSIDGRKDLSGGRK--ETDRITAEN-SAKGKTFTTICYSA-DGKCIL 598 (893)
T ss_pred CeEEEEEec--ceEEEEEhhhce--------eeccccchhhcccccc--ccceeehhh-cccCCceEEEEEcC-CCCEEE
Confidence 999998765 588899864321 0000111111000000 000010000 01124467788887 888887
Q ss_pred EEeeCCeEEEEecc
Q 000992 540 LQFHGGKISEYMSR 553 (1196)
Q Consensus 540 ~~~~dG~v~~~~~~ 553 (1196)
.......|-.|+..
T Consensus 599 AgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 599 AGGESNSICIYDVP 612 (893)
T ss_pred ecCCcccEEEEECc
Confidence 77777777777654
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-24 Score=229.34 Aligned_cols=281 Identities=15% Similarity=0.092 Sum_probs=214.2
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++-+. .++++++|-|..|+.|+++ ..+...-+. -..+.+| ...|.++..++||++..+++-||+++
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~--~dd~~~G~~--~r~~~GH----sH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLT--SDDIKYGVP--VRRLTGH----SHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEec--cCccccCce--eeeeecc----ceEecceEEccCCceEEeccccceEE
Confidence 7888887766 6899999999999999994 332211000 0114555 24799999999999999999999999
Q ss_pred EEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+||+.+++. ..+| |...|.+++||||...++++|.|+||++|+...+...+..-. .+.+.|.+
T Consensus 89 lWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~--------------~~~~WVsc 153 (315)
T KOG0279|consen 89 LWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED--------------SHREWVSC 153 (315)
T ss_pred EEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC--------------CCcCcEEE
Confidence 999998754 3666 588899999999999999999999999987665554443321 12367899
Q ss_pred EEEccC--CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 179 ISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 179 isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+.|+|. .-+|+ +++ .|++|||||.++-++..++-+|.+.++.+++||||.++|+|+.+ ..+.+|+
T Consensus 154 vrfsP~~~~p~Iv-s~s------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd------g~~~Lwd 220 (315)
T KOG0279|consen 154 VRFSPNESNPIIV-SAS------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD------GEAMLWD 220 (315)
T ss_pred EEEcCCCCCcEEE-Ecc------CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC------ceEEEEE
Confidence 999998 56777 455 57999999998888888999999999999999999999999886 4699999
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEEEec---CCc--EEEEEcc
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLR---RDG--IRFMWHP 329 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~~~~---~~~--~~v~Wsp 329 (1196)
.|-.++- +.+ .+...|.+++|||+--.|+.+.... |+||+.....- -|+.+...+. ..+ .+++|++
T Consensus 221 L~~~k~l-ysl--~a~~~v~sl~fspnrywL~~at~~s----IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 221 LNEGKNL-YSL--EAFDIVNSLCFSPNRYWLCAATATS----IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred ccCCcee-Eec--cCCCeEeeEEecCCceeEeeccCCc----eEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence 8754442 233 3446799999999999999998876 99999876432 1233333321 122 7899999
Q ss_pred CCCceEEEEecCCcEEE
Q 000992 330 TKPLQLICWTLDGQITT 346 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~ 346 (1196)
+|.. |..+..+|.+..
T Consensus 294 dG~t-Lf~g~td~~irv 309 (315)
T KOG0279|consen 294 DGQT-LFAGYTDNVIRV 309 (315)
T ss_pred CCcE-EEeeecCCcEEE
Confidence 9864 666666776653
No 20
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.94 E-value=4.7e-23 Score=235.89 Aligned_cols=779 Identities=15% Similarity=0.169 Sum_probs=440.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
-+..+||-|||..|..+.++. ++.+|.| -+.. ..+ |++| .+.|..|+|+.||+.+|+|++|..|++
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~n--dG~l---lqt----LKgH----KDtVycVAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTS--DGTL---LQP----LKGH----KDTVYCVAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCC--Cccc---ccc----cccc----cceEEEEEEccCCceeccCCCceeEEE
Confidence 567799999999999888877 8899984 2221 122 6666 468999999999999999999999999
Q ss_pred EECCC-CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~-~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+..- |.+. =+|.+.|.||+|+|=.+.||+++-. ..-+|+..-+.+... -...++.+.+
T Consensus 80 W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-----------------kss~R~~~Cs 139 (1081)
T KOG1538|consen 80 WTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-----------------KSSSRIICCS 139 (1081)
T ss_pred ecccccceee--eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-----------------hhheeEEEee
Confidence 99753 2222 2468899999999999999999864 244554322111111 1124678999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc---CCCceeEEEEcCCC-----CeEEEEecCCCCCCCCeE
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL---KAFMGAVLEWMPSG-----ANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~---~~~~v~slawsPdG-----~~IAs~s~d~~~~~~~~V 252 (1196)
|..||+||| .+- +++||-|.|. +|+..-..+. ....+++|+|+|+. ..||+.... .++
T Consensus 140 WtnDGqyla-lG~------~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~------qTL 205 (1081)
T KOG1538|consen 140 WTNDGQYLA-LGM------FNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG------QTL 205 (1081)
T ss_pred ecCCCcEEE-Eec------cCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc------cee
Confidence 999999999 875 5789999998 7765544432 45678999999974 367777663 568
Q ss_pred EEEeCCCeeEE-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCC
Q 000992 253 VFYERNGLERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK 331 (1196)
Q Consensus 253 ~~~e~nGl~~~-~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~ 331 (1196)
.|+...|...+ +-+|. -.-..|++-|+|+++.+|+.|+ .+++++...-. -.++.--....+++.-+|.+
T Consensus 206 SFy~LsG~~Igk~r~L~----FdP~CisYf~NGEy~LiGGsdk---~L~~fTR~Gvr---LGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 206 SFYQLSGKQIGKDRALN----FDPCCISYFTNGEYILLGGSDK---QLSLFTRDGVR---LGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred EEEEecceeecccccCC----CCchhheeccCCcEEEEccCCC---ceEEEeecCeE---EeeccccceeEEEEEEccCC
Confidence 89988887665 21222 2244789999999999999999 78999877522 11221100112677778877
Q ss_pred CceEEEEecCCcEEEEEEEEeeec--------CCCeeEEE-----EcCCEEEEeeccccCCCCCceeeeecCCCCEEEEE
Q 000992 332 PLQLICWTLDGQITTYNFIWTTAV--------MENSTALV-----IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMA 398 (1196)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~--------~d~~~v~v-----iDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Va 398 (1196)
.. ..+++.||++.+++.++++-. ....+.-| +-+..+++ ...+-|..++
T Consensus 276 Q~-v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrI-----------------kC~DLVkKia 337 (1081)
T KOG1538|consen 276 QY-VVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRI-----------------KCKDLVKKIA 337 (1081)
T ss_pred ce-EEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeee-----------------eHHHHHHHHH
Confidence 54 889999999999888876540 00111100 11221111 1112233344
Q ss_pred EecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceE----
Q 000992 399 FYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY---- 474 (1196)
Q Consensus 399 fspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~---- 474 (1196)
... +.||+-..+ .|.||.+...... .-++++...+ ...+.|| ++++... .++
T Consensus 338 iYr----nrLAVQLpe-ki~iYel~se~~~----~mhY~v~ekI-------~kkf~cS----LlVVc~~----HiVlCqe 393 (1081)
T KOG1538|consen 338 IYR----NRLAVQLPE-KILIYELYSEDLS----DMHYRVKEKI-------IKKFECS----LLVVCAN----HIVLCQE 393 (1081)
T ss_pred hhh----hhheecccc-eEEEEeccccccc----cchhHHHHHH-------Hhhccce----EEEEEcC----eEEEEcc
Confidence 333 468888777 6778887643211 0001100000 0011111 2222211 111
Q ss_pred --EEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 475 --FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 475 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
+--+++.| .++-+ |+.. +.+. -+.+.-.|+..+++.+-+.||.|++.-.
T Consensus 394 krLqClDF~G-------vk~Re----------------W~M~--S~iR----YikV~GGP~gREgL~vGlknGqV~kiF~ 444 (1081)
T KOG1538|consen 394 KRLQCLDFSG-------VKERE----------------WQME--SLIR----YIKVIGGPPGREGLLVGLKNGQVLKIFV 444 (1081)
T ss_pred cceeeecccc-------hhhhh----------------hhHH--HHHH----hhhhhcCCCCcceeEEEecCCcEEEEEe
Confidence 11222222 11111 1110 0000 0112223445689999999999998744
Q ss_pred cccccCCCCCCCCCCCCCC----CCceeEEEecCCCCCccEEEEEcCCCceEe----CCEEee--cCceeEEE---eccC
Q 000992 553 RVGLTGGALTHDDASFPSS----CPWMNVVSVGTNGPLKPLLFGLDDGGRLHV----SGKIVC--NNCSSFSF---YSKS 619 (1196)
Q Consensus 553 ~~~~~~~~~~~~~~~fp~~----c~~~~~~~~~~~~~~~~~~~gL~~~~~L~~----n~~~~~--~~~tSf~~---~~~~ 619 (1196)
+. .||-. ..-++...|+.+ ...+--..+++.+-+ ++.++- .+|.|.+- -++
T Consensus 445 dN------------~~PiLl~~~~tAvrClDINA~---R~kLAvVDD~~~c~v~DI~t~elL~QEpg~nSV~wNT~~E~- 508 (1081)
T KOG1538|consen 445 DN------------LFPILLLKQATAVRCLDINAS---RKKLAVVDDNDTCLVYDIDTKELLFQEPGANSVAWNTQCED- 508 (1081)
T ss_pred cC------------CchhheecccceeEEeeccCC---cceEEEEccCCeEEEEEccCCceEeecCCCceEEeeccccc-
Confidence 32 12221 111122222211 112223344444432 233332 46666653 244
Q ss_pred ccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCC-EEEEEecCCccEEEEEcCCC
Q 000992 620 AGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGA-KVIGVLHGDEAAVILQTNRG 698 (1196)
Q Consensus 620 ~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs-~iV~~~p~~~~~vVLQmpRG 698 (1196)
.|.||+. +.|..=-+. +++ |. .+|- -+|+..-+. +-+. ||
T Consensus 509 ------MlcfT~~-g~L~VR~~~------~P~--------------------h~-qk~~G~VvG~~gsk-~FCL----~~ 549 (1081)
T KOG1538|consen 509 ------MLCFTGG-GYLNVRAST------FPV--------------------HR-QKLQGFVVGYNGSK-IFCL----HV 549 (1081)
T ss_pred ------eEEEecC-CceEEEecc------CCc--------------------ch-hcceEEEEEecCce-EEEE----Ee
Confidence 6677665 444332111 010 11 2221 122222222 2222 12
Q ss_pred ccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHHhHHHHHHhcCCcchHHHHHhhccCCccc
Q 000992 699 NLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778 (1196)
Q Consensus 699 NLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~~~~~Fv~qv~~~~~l~lFls~L~~edvt 778 (1196)
|.-.--|.+++- ..-++|.++.|++|.. |-===+++-| |+-.-..+ ++ +|. -|+.
T Consensus 550 ~~i~~~evp~~~-~m~q~Ieag~f~ea~~------iaclgVv~~D-W~~LA~~A---Le-------------AL~-f~~A 604 (1081)
T KOG1538|consen 550 FSISAVEVPQSA-PMYQYIERGLFKEAYQ------IACLGVTDTD-WRELAMEA---LE-------------ALD-FETA 604 (1081)
T ss_pred eeeecccccccc-cchhhhhccchhhhhc------ccccceecch-HHHHHHHH---Hh-------------hhh-hHHH
Confidence 211112233332 4668899999999763 3222344555 54322111 00 110 1111
Q ss_pred ccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHHh---hcCCCCCCchhhhhhhhhhcCCccHHHHHHH
Q 000992 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALE---EKVPESPSRELCILTTLARSDPPALEEALER 855 (1196)
Q Consensus 779 ~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~---~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~ 855 (1196)
..-|..- .+ -| ... +...|+ ++...+..-++.-+-||.+| +.+|-++
T Consensus 605 RkAY~rV-----Rd-----------------l~---~L~-li~EL~~~k~rge~P~~iLlA~~~Ay~gK----F~EAAkl 654 (1081)
T KOG1538|consen 605 RKAYIRV-----RD-----------------LR---YLE-LISELEERKKRGETPNDLLLADVFAYQGK----FHEAAKL 654 (1081)
T ss_pred HHHHHHH-----hc-----------------cH---HHH-HHHHHHHHHhcCCCchHHHHHHHHHhhhh----HHHHHHH
Confidence 1111100 00 00 001 111111 11011222232222333332 4444444
Q ss_pred HHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccC----hhHHHHHHHHhcCCcchhhHHHHHHhcC
Q 000992 856 IKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD----LNLAAIVALNSQRDPKEFLPYLQELESM 931 (1196)
Q Consensus 856 i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD----~~lal~vAq~sq~DpkeYlpfL~~L~~l 931 (1196)
.++- . . =+.||+||- |++|..+.. -.+|+|= .+
T Consensus 655 Fk~~---G-------------~-----------------enRAlEmyTDlRMFD~aQE~~~--~g~~~eK-Km------- 691 (1081)
T KOG1538|consen 655 FKRS---G-------------H-----------------ENRALEMYTDLRMFDYAQEFLG--SGDPKEK-KM------- 691 (1081)
T ss_pred HHHc---C-------------c-----------------hhhHHHHHHHHHHHHHHHHHhh--cCChHHH-HH-------
Confidence 2211 0 0 123444542 223322211 1355541 11
Q ss_pred ChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 932 PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 932 ~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
-.++|++-.--.+...-|.++|+.+|+ .++|++.+.+| +--+.+.++. .=+..-++-++..|.||.....+--|+
T Consensus 692 -L~RKRA~WAr~~kePkaAAEmLiSaGe--~~KAi~i~~d~-gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 692 -LIRKRADWARNIKEPKAAAEMLISAGE--HVKAIEICGDH-GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred -HHHHHHHHhhhcCCcHHHHHHhhcccc--hhhhhhhhhcc-cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 124455555556788899999999998 79999999999 8777777777 333334456678999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000992 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1196)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~ 1090 (1196)
++|.+.|+....+++.+..++|.+|+.+|.+++.- +.+++...|..|.+..+++||-+.|.+ +|.-++|+.++-+.
T Consensus 768 eIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhk-AGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 768 EIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHK-AGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHHhccHHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHH-hcchHHHHHHHHHh
Confidence 99999999999999999999999999999997533 346788899999999999999999888 78777777766543
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=5.7e-26 Score=249.67 Aligned_cols=283 Identities=15% Similarity=0.153 Sum_probs=220.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
-.|..|.|.|+|+.|.+|+..|.+.|||..+--.| +...|+..|.++.||++|.++++|+.+|.|+.|....+.+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ 176 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ 176 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhh
Confidence 36899999999999999999999999998664455 67789999999999999999999999999999876655544333
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
.+ |+..|.+++|||...-|+| .| +|++|+|||...++..+.+.+|.-.+.+++|+|.-
T Consensus 177 ah---------------h~eaIRdlafSpnDskF~t-~S------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 177 AH---------------HAEAIRDLAFSPNDSKFLT-CS------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred Hh---------------hhhhhheeccCCCCceeEE-ec------CCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence 22 2356799999998888884 44 47999999987777777778898899999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
.+|||++.| +.|+|||. .|.-. .++.. +...|.++.|+|+|.+|++++.|. .++++|+....- -+
T Consensus 235 gLiasgskD------nlVKlWDprSg~cl--~tlh~-HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mkE--l~ 300 (464)
T KOG0284|consen 235 GLIASGSKD------NLVKLWDPRSGSCL--ATLHG-HKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMKE--LF 300 (464)
T ss_pred ceeEEccCC------ceeEeecCCCcchh--hhhhh-ccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhHH--HH
Confidence 999999986 37999994 33211 12222 346799999999999999999999 999999874220 12
Q ss_pred EEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCC
Q 000992 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA 393 (1196)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~ 393 (1196)
.++.|.++.+++.|||-....+.++..+|++.++.+ +.. -|+ ..+|+ .|...
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v---------------~~~----~p~----~~i~~-----AHd~~ 352 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV---------------GLE----EPL----GEIPP-----AHDGE 352 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEec---------------ccc----ccc----cCCCc-----ccccc
Confidence 233444556899999998877777777777653321 100 011 11222 37889
Q ss_pred EEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 394 VTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 394 V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
||+++|+|=| .+||+++.|.++++|...-
T Consensus 353 iwsl~~hPlG--hil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 353 IWSLAYHPLG--HILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeeeccccc--eeEeecCCCcceeeeccCC
Confidence 9999999999 8999999999999998763
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=8.9e-24 Score=223.31 Aligned_cols=298 Identities=15% Similarity=0.159 Sum_probs=221.2
Q ss_pred EeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccC-ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
+...|.+.|.+++..|+ -++|.+++.|.++++|...- |...+.... .|.+|...|..+.-++||+|+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r-----------~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVR-----------RLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceee-----------eeeccceEecceEEccCCceE
Confidence 45557899999999998 57889999999999996332 222222222 344788888999999999998
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1196)
. +++ .|+++|+||..+|+....+.+|..-|.+++||||.+.|.||++|+ +|.+|+.-|... +++.
T Consensus 79 l-S~s------wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk------Tiklwnt~g~ck--~t~~ 143 (315)
T KOG0279|consen 79 L-SAS------WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK------TIKLWNTLGVCK--YTIH 143 (315)
T ss_pred E-ecc------ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc------eeeeeeecccEE--EEEe
Confidence 8 565 479999999999999999999999999999999999999999975 699999755332 3444
Q ss_pred cCC-CCcEEEEEEccC--CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 269 EQI-DSTVELLKWNCM--SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 269 ~~~-~~~V~~laWSpD--g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
... .++|..+.|||+ .-++++++.|+ +|++|+..|.+ +++.+..+......+..||||.++ ..+..+
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk---tvKvWnl~~~~--l~~~~~gh~~~v~t~~vSpDGslc-asGgkd---- 213 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDK---TVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSPDGSLC-ASGGKD---- 213 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCc---eEEEEccCCcc--hhhccccccccEEEEEECCCCCEE-ecCCCC----
Confidence 333 679999999999 78999999999 99999999864 455665555455889999999753 222222
Q ss_pred EEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 346 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 346 ~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..+.+|+++.. -+.+++++...|++++|+|+. -.|+.+... .|+||++++.
T Consensus 214 ---------------------g~~~LwdL~~~-----k~lysl~a~~~v~sl~fspnr--ywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 214 ---------------------GEAMLWDLNEG-----KNLYSLEAFDIVNSLCFSPNR--YWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred ---------------------ceEEEEEccCC-----ceeEeccCCCeEeeEEecCCc--eeEeeccCC-ceEEEeccch
Confidence 24556666532 234788899999999999997 677777544 6999999987
Q ss_pred CccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
.+..++.-... .+..+...-...+++|++||.-|..+..+ +-+.+|.+
T Consensus 265 ~~v~~l~~d~~---g~s~~~~~~~clslaws~dG~tLf~g~td--~~irv~qv 312 (315)
T KOG0279|consen 265 AVVEELKLDGI---GPSSKAGDPICLSLAWSADGQTLFAGYTD--NVIRVWQV 312 (315)
T ss_pred hhhhhcccccc---ccccccCCcEEEEEEEcCCCcEEEeeecC--CcEEEEEe
Confidence 77654431110 00011111257889999999988877654 56666665
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=5.8e-23 Score=240.00 Aligned_cols=440 Identities=13% Similarity=0.045 Sum_probs=291.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++++++|+..|+.++-...+..|++ .++.. |.. ++. ...+.|.-++|.|.|-.|++|+.||.|++
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L--~tgk~---irs----wKa---~He~Pvi~ma~~~~g~LlAtggaD~~v~V 131 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSL--PTGKL---IRS----WKA---IHEAPVITMAFDPTGTLLATGGADGRVKV 131 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEc--ccchH---hHh----Hhh---ccCCCeEEEEEcCCCceEEeccccceEEE
Confidence 7899999999999999999998999999 55533 110 222 11367999999999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCE--EEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDL--LGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~--LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||...+.+. .+-.|.+.|.++.|.|+-.+ |+++..|++|++|+-.-.. .+++... .|.+.|.+
T Consensus 132 Wdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~---tcl~~~~-----------~H~S~vts 197 (775)
T KOG0319|consen 132 WDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR---TCLHTMI-----------LHKSAVTS 197 (775)
T ss_pred EEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc---hHHHHHH-----------hhhhheee
Confidence 999987654 34446888999999999765 8888999999998732111 1333322 56678899
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC-----CCeEEEEecCCC--------
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GANIAAVYDRKS-------- 245 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd-----G~~IAs~s~d~~-------- 245 (1196)
+++++||.-+.+ ++ .|+++-|||..+-++..+.+-.++. .++.+=++ |.+|.+++..+.
T Consensus 198 L~~~~d~~~~ls-~~------RDkvi~vwd~~~~~~l~~lp~ye~~-E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es 269 (775)
T KOG0319|consen 198 LAFSEDSLELLS-VG------RDKVIIVWDLVQYKKLKTLPLYESL-ESVVRLREELGGKGEYIITAGGSGVVQYWDSES 269 (775)
T ss_pred eeeccCCceEEE-ec------cCcEEEEeehhhhhhhheechhhhe-eeEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence 999999998883 44 4789999998665555554322222 33334444 334444433210
Q ss_pred ---------C--------------------CCCCeEEEEeCCC---------------------------------eeEE
Q 000992 246 ---------E--------------------NKCPSIVFYERNG---------------------------------LERS 263 (1196)
Q Consensus 246 ---------~--------------------~~~~~V~~~e~nG---------------------------------l~~~ 263 (1196)
. ...+.+.++|... ...+
T Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr 349 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELR 349 (775)
T ss_pred chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceE
Confidence 0 0012233332110 0001
Q ss_pred EEEec-------cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEEEecCCcEEEEEccCCCce
Q 000992 264 SFDIN-------EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 264 ~f~l~-------~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
-++++ ..|+..|.+|.-..+|.+||+++.|. +|+||..+|..- ...+....|.+....+..+.-++.-
T Consensus 350 ~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~---svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 350 LYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK---SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred EEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc---eEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 11111 12345688888566779999999999 999999855321 0001122333333445555444443
Q ss_pred EEEEecCCcEEEEEEEE--------------------------eeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 335 LICWTLDGQITTYNFIW--------------------------TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 335 L~~~~~~g~~~~~~~~~--------------------------~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
+..+++|+++..+...- .++|+|.-++....+++.++|.+. ...-..++
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-----~~~l~~vL 501 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-----QLRLLGVL 501 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-----CceEEEEe
Confidence 44444454443322211 111556556666778888888774 22223445
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 389 -~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
+|...||+|.|+|.. +.+|+.|.|+||+||..++..|++++.||. ..|....|..+|+.|.++..
T Consensus 502 sGH~RGvw~V~Fs~~d--q~laT~SgD~TvKIW~is~fSClkT~eGH~------------~aVlra~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKND--QLLATCSGDKTVKIWSISTFSCLKTFEGHT------------SAVLRASFIRNGKQLISAGA 567 (775)
T ss_pred eCCccceEEEEecccc--ceeEeccCCceEEEEEeccceeeeeecCcc------------ceeEeeeeeeCCcEEEeccC
Confidence 488899999999998 999999999999999999999999988863 46888899999988887655
Q ss_pred CCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeE
Q 000992 468 GPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKI 547 (1196)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v 547 (1196)
+ .-+++|+++.+. .+ .+.-.++.+|=++..++ ..+.++-...||++
T Consensus 568 d--GliKlWnikt~e------------C~-------------------~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 568 D--GLIKLWNIKTNE------------CE-------------------MTLDAHNDRVWALSVSP-LLDMFVTGGGDGRI 613 (775)
T ss_pred C--CcEEEEeccchh------------hh-------------------hhhhhccceeEEEeecC-ccceeEecCCCeEE
Confidence 4 688999985321 11 12234577888887777 66666677889999
Q ss_pred EEEe
Q 000992 548 SEYM 551 (1196)
Q Consensus 548 ~~~~ 551 (1196)
..|.
T Consensus 614 ~~wk 617 (775)
T KOG0319|consen 614 IFWK 617 (775)
T ss_pred EEee
Confidence 9884
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=2.9e-23 Score=242.46 Aligned_cols=432 Identities=13% Similarity=0.097 Sum_probs=301.9
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD 105 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~ 105 (1196)
++|++.|+.||+...+- |+..|+ .++... +|..- ....+.+++++..||++.|..++..+-+++|+++
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv--~t~~~~-----l~s~~----~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~ 92 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDV--ATGSIA-----LPSGS----NEDEDEITALALTPDEEVLVTASRSQLLRVWSLP 92 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEc--cCCcee-----cccCC----ccchhhhheeeecCCccEEEEeeccceEEEEEcc
Confidence 89999999999999886 777777 444331 22210 1114689999999999999999999999999999
Q ss_pred CCeE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc
Q 000992 106 GNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 106 ~~~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
++++ . ....|+++|..++|+|-|.+||+|+.|+.|++|+- ..+...|. |++|.+.|.++.|.|
T Consensus 93 tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi----~~~~~th~-----------fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDI----KNGYCTHS-----------FKGHGGVVSSLLFHP 157 (775)
T ss_pred cchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEe----eCCEEEEE-----------ecCCCceEEEEEeCC
Confidence 9865 2 55668999999999999999999999999999763 33444443 457788899999999
Q ss_pred CCce--EEEeeccccccCCCCEEEEEECCCCcE-EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 184 DGKY--FATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 184 DG~~--lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
+-.+ |+ ++. .|+++|+||..++.. ..+...|...+.+++++|||..+.++++|+ .+.+|+.--
T Consensus 158 ~~~~~lL~-sg~------~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk------vi~vwd~~~- 223 (775)
T KOG0319|consen 158 HWNRWLLA-SGA------TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK------VIIVWDLVQ- 223 (775)
T ss_pred ccchhhee-ecC------CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc------EEEEeehhh-
Confidence 9876 45 343 479999999965654 667788999999999999999999999974 688998611
Q ss_pred eEEEEEec-cCCCCcEEEEEEccC-----CCeeEEEEccCCcceEEEEEecCCEEEEE----------------------
Q 000992 261 ERSSFDIN-EQIDSTVELLKWNCM-----SDLLAAVVRFEEYDSVKICFFSNNHWYLK---------------------- 312 (1196)
Q Consensus 261 ~~~~f~l~-~~~~~~V~~laWSpD-----g~~LAs~~~d~~~~~V~lW~~~n~~wylk---------------------- 312 (1196)
.. .++ .|....+.++.+-++ |+++.+++.++ .+|+|+........+
T Consensus 224 -~~--~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g---~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 224 -YK--KLKTLPLYESLESVVRLREELGGKGEYIITAGGSG---VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred -hh--hhheechhhheeeEEEechhcCCcceEEEEecCCc---eEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 11 111 222345778888777 77899998888 899999764332111
Q ss_pred -----EEEEEec--------------CCcEE-EEEccCCCceEEEEecCCcEEEE-------------------------
Q 000992 313 -----YEIRYLR--------------RDGIR-FMWHPTKPLQLICWTLDGQITTY------------------------- 347 (1196)
Q Consensus 313 -----q~l~~~~--------------~~~~~-v~Wsp~~~~~L~~~~~~g~~~~~------------------------- 347 (1196)
|++.+-. +.... ..|-|+... |++.+.++.+..+
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~-laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH-LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS 376 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce-EEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc
Confidence 1111100 00111 124444332 4444433332211
Q ss_pred ------------EEEEeee--------------------------cCCCeeEEEEcCCEEEEeeccc--cCCCCCce--e
Q 000992 348 ------------NFIWTTA--------------------------VMENSTALVIDGSKILVTPLSL--SLMPPPMY--L 385 (1196)
Q Consensus 348 ------------~~~~~~~--------------------------~~d~~~v~viDg~~l~lt~l~~--~~vpppm~--~ 385 (1196)
...|... -.....+.|..+.++++|++.. ..-+|+.. .
T Consensus 377 g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 377 GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence 1224221 0012456778888999999976 22222221 1
Q ss_pred e-eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEE
Q 000992 386 F-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464 (1196)
Q Consensus 386 ~-~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~ 464 (1196)
+ ...|+..|++|+.+|+. +.+|+++.|.+.+||+++.....+++.|| ...|+++.|+|.++++|+
T Consensus 457 ~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l~~vLsGH------------~RGvw~V~Fs~~dq~laT 522 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRLLGVLSGH------------TRGVWCVSFSKNDQLLAT 522 (775)
T ss_pred HHHHhhcccccceEecCCC--ceEEecccccceeeecccCceEEEEeeCC------------ccceEEEEeccccceeEe
Confidence 1 12488899999999999 99999999999999999865455555554 468999999999999999
Q ss_pred EecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeC
Q 000992 465 SHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHG 544 (1196)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 544 (1196)
++.+ .++++|.+.- ..+ ..+.-++...|....+-. ++..++....|
T Consensus 523 ~SgD--~TvKIW~is~------------------------------fSC-lkT~eGH~~aVlra~F~~-~~~qliS~~ad 568 (775)
T KOG0319|consen 523 CSGD--KTVKIWSIST------------------------------FSC-LKTFEGHTSAVLRASFIR-NGKQLISAGAD 568 (775)
T ss_pred ccCC--ceEEEEEecc------------------------------cee-eeeecCccceeEeeeeee-CCcEEEeccCC
Confidence 9887 6899999831 111 122333455566655544 67888889999
Q ss_pred CeEEEEecc
Q 000992 545 GKISEYMSR 553 (1196)
Q Consensus 545 G~v~~~~~~ 553 (1196)
|-+-.|+..
T Consensus 569 GliKlWnik 577 (775)
T KOG0319|consen 569 GLIKLWNIK 577 (775)
T ss_pred CcEEEEecc
Confidence 999999764
No 25
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=7.6e-24 Score=257.70 Aligned_cols=317 Identities=15% Similarity=0.179 Sum_probs=225.8
Q ss_pred CCEEEEEEccCCCEEEEEE--CCCcEEEEECCC-------------CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceE
Q 000992 76 DSITAFDYLMEKEALIVGT--SSGLLLLHSVDG-------------NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQI 140 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as--~dG~I~lw~~~~-------------~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV 140 (1196)
..|.+|+.+|||..+|+++ .||.+.+|+.+. +.+-.+-.|.+.|+|+.|||||++||+||.|+-|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 4689999999999999999 999999999853 0112445678999999999999999999999999
Q ss_pred EEEeccCceeeeeecccccCccccc----cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVH----EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs----~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~ 216 (1196)
.+|.+..-........+.. .+.+. -..+.+|+..|..+.|+||+.+|| +.+. |++|-|||..+.++..
T Consensus 94 ~iW~~~~~~~~~~fgs~g~-~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv-S~s~------DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGG-AKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV-SVSL------DNSVIIWNAKTFELLK 165 (942)
T ss_pred EEeeecccCCccccccccc-ccccceeeEEEEEecCCCccceeccCCCccEEE-Eecc------cceEEEEccccceeee
Confidence 9998764111222211111 01110 112448999999999999999999 4553 6899999999999999
Q ss_pred EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe--eEEEEEec---cCCCCcEEEEEEccCCCeeEEEE
Q 000992 217 SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERSSFDIN---EQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 217 ~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl--~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
++++|.++|-.++|-|-|+++||-++|. +|++|..+.. .|. .+=+ .+.+.....++|||||++||+.-
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDr------tikvwrt~dw~i~k~-It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDR------TLKVWRTSDWGIEKS-ITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCc------eEEEEEcccceeeEe-eccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999999874 6999985432 221 1111 12234588999999999999976
Q ss_pred ccC-CcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEE-EcCCEE
Q 000992 292 RFE-EYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV-IDGSKI 369 (1196)
Q Consensus 292 ~d~-~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~v-iDg~~l 369 (1196)
.-. +..+++|-+.++ |.-...+..|......+.|+|-=-. --..+|.....+-.+ .++|+ ..+..|
T Consensus 239 A~n~~~~~~~IieR~t--Wk~~~~LvGH~~p~evvrFnP~lfe---~~~~ng~~~~~~~~y-------~i~AvgSqDrSl 306 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGT--WKVDKDLVGHSAPVEVVRFNPKLFE---RNNKNGTSTQPNCYY-------CIAAVGSQDRSL 306 (942)
T ss_pred hccCCcceeEEEecCC--ceeeeeeecCCCceEEEEeChHHhc---cccccCCccCCCcce-------EEEEEecCCccE
Confidence 543 466999999976 4445667776654488899983110 000123221111001 12222 234467
Q ss_pred EEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.+|... .|.||..-.--+...|.+++||||| -.|.+.|.||+|.+..++.
T Consensus 307 SVW~T~---~~RPl~vi~~lf~~SI~DmsWspdG--~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 307 SVWNTA---LPRPLFVIHNLFNKSIVDMSWSPDG--FSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEecC---CCCchhhhhhhhcCceeeeeEcCCC--CeEEEEecCCeEEEEEcch
Confidence 777663 3667753211257789999999999 8899999999999999975
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.1e-22 Score=237.17 Aligned_cols=376 Identities=16% Similarity=0.141 Sum_probs=276.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.++.+-||..|..+.++|.|+.|+.||+ ....+-.+ +++| .+.|+.+-|+.+.+.|++.+.|+.|++
T Consensus 109 AVt~l~fd~~G~rlaSGskDt~IIvwDl--V~E~Gl~r-------L~GH----kd~iT~~~F~~~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 109 AVTTLKFDKIGTRLASGSKDTDIIVWDL--VGEEGLFR-------LRGH----KDSITQALFLNGDSFLVSVSKDSMIKF 175 (888)
T ss_pred ceEEEEEcccCceEeecCCCccEEEEEe--ccceeeEE-------eecc----hHHHhHHhccCCCeEEEEeccCceEEE
Confidence 6778889999999999999999999999 65555322 5666 468999999998899999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee----------------------eeecccc
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY----------------------ENPLEEL 158 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~----------------------~~~l~~~ 158 (1196)
||++++.| ++.-.|.+.|+++++.+ +.+++++.|+.+++|...++.-. +..+...
T Consensus 176 WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 176 WDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 99999876 44444689999999998 78888999999999965221100 0000000
Q ss_pred cCcc--------------------------------------------ccc-----------------------------
Q 000992 159 AEGF--------------------------------------------DVH----------------------------- 165 (1196)
Q Consensus 159 ~~~~--------------------------------------------~Vs----------------------------- 165 (1196)
.... .|.
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence 0000 000
Q ss_pred -c-------------------------------CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc
Q 000992 166 -E-------------------------------PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT 213 (1196)
Q Consensus 166 -~-------------------------------tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~ 213 (1196)
+ -.+.+|...|.++++|.|...++ +++ .+.|+||++.+++
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sga-------~~SikiWn~~t~k 405 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA-SGA-------GESIKIWNRDTLK 405 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee-ecC-------CCcEEEEEccCcc
Confidence 0 00115677788889999888777 443 4789999998777
Q ss_pred EEEEec----------------------------------------cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 214 LQASSE----------------------------------------LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 214 l~~~~e----------------------------------------~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
++.+.+ .|+|.+++++-+|||+-.+++|.|+ +|+
T Consensus 406 ciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk------tVk 479 (888)
T KOG0306|consen 406 CIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK------TVK 479 (888)
T ss_pred eeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc------EEE
Confidence 666532 3677889999999999999999974 699
Q ss_pred EEe------CCCeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcE
Q 000992 254 FYE------RNGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1196)
Q Consensus 254 ~~e------~nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~ 323 (1196)
||+ .+|.+..-..+. ..-++.|.++++||||++||++.-|. ||+++.+.+.+.|+ .+..|.-.+.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlKFfl--sLYGHkLPV~ 554 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLKFFL--SLYGHKLPVL 554 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC---eEEEEEecceeeee--eeccccccee
Confidence 997 234443322222 11245799999999999999999999 99999999987665 4555433337
Q ss_pred EEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecC
Q 000992 324 RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSK 402 (1196)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspd 402 (1196)
++.-|||+.. +..++ -++++++|.+.-+. |++++ .|++.|.+|-|-|.
T Consensus 555 smDIS~DSkl-ivTgS-------------------------ADKnVKiWGLdFGD-----CHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 555 SMDISPDSKL-IVTGS-------------------------ADKNVKIWGLDFGD-----CHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred EEeccCCcCe-EEecc-------------------------CCCceEEeccccch-----hhhhhhcccCceeEEEEccc
Confidence 7888888764 33322 23466777554322 66666 69999999999998
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 403 SSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 403 g~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
. ..+.+++.|+.|+-||-+.-.+.+.+.|| ...|+.++-+|+|.++++++++ .++.+|..
T Consensus 604 ~--~~FFt~gKD~kvKqWDg~kFe~iq~L~~H------------~~ev~cLav~~~G~~vvs~shD--~sIRlwE~ 663 (888)
T KOG0306|consen 604 T--HLFFTCGKDGKVKQWDGEKFEEIQKLDGH------------HSEVWCLAVSPNGSFVVSSSHD--KSIRLWER 663 (888)
T ss_pred c--eeEEEecCcceEEeechhhhhhheeeccc------------hheeeeeEEcCCCCeEEeccCC--ceeEeeec
Confidence 7 88999999999999998766666555554 4579999999999999998887 57778876
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=2.5e-24 Score=254.38 Aligned_cols=245 Identities=14% Similarity=0.150 Sum_probs=197.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccc-----ccceeeccc---cc----------------cccccCCCCCC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNE-----RASIKTAIS---AE----------------IEHIDLEPGDS 77 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~-----~~~~~~~~~---~~----------------l~~~~~~~~~~ 77 (1196)
.+.|..|..|+..+.++-.|+.|+.|.+ ..++ ....+..++ ++ +.+| .+.
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl--~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH----~GP 453 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSL--TPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH----SGP 453 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEec--chhhhccccchhhhccccccccchhhhhccccCCceeEEeecC----CCc
Confidence 5677788888888888888888999998 3211 000111111 00 2333 578
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecc
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~ 156 (1196)
|.+..|+||.+.|++.|+|++|+||++++..+- ...+|-.+|+.++|+|-|-+.|++|.|+|.++|+.+- ..+++
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~----~~PlR 529 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH----NKPLR 529 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc----CCchh
Confidence 999999999999999999999999999986543 3334688999999999999999999999999987442 22222
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
-|.+|-..|.+++|.|++.|+| .+| .|+++|+||..+|.....+.+|.+.|.+++|||+|++
T Consensus 530 -----------ifaghlsDV~cv~FHPNs~Y~a-TGS------sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 530 -----------IFAGHLSDVDCVSFHPNSNYVA-TGS------SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -----------hhcccccccceEEECCcccccc-cCC------CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 2447778889999999999999 576 4799999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 237 IAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
||||+.+ +.|.+|+. +|.+..++ .+| .+.|.+|.||.||.+||+++.|. +|++||+..
T Consensus 592 LaSg~ed------~~I~iWDl~~~~~v~~l--~~H-t~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDED------GLIKIWDLANGSLVKQL--KGH-TGTIYSLSFSRDGNVLASGGADN---SVRLWDLTK 650 (707)
T ss_pred EeecccC------CcEEEEEcCCCcchhhh--hcc-cCceeEEEEecCCCEEEecCCCC---eEEEEEchh
Confidence 9999986 46999994 56666543 344 78899999999999999999999 999999864
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-20 Score=212.77 Aligned_cols=373 Identities=13% Similarity=0.141 Sum_probs=246.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+-+..+-|-.--+..+-=++.+..|+. .+... + +++.. ..-.|.+-.|.+-.+.+++|+.|+.|++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWny--etqtm---V-------ksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNY--ETQTM---V-------KSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEec--cccee---e-------eeeee-cccchhhheeeeccceEEEecCCceEEE
Confidence 4444444444444444434666888988 44433 1 11111 1235888899999999999999999999
Q ss_pred EECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
+|.+|+ ++.....|++-|+|++-.|..-++.++|.|-+|++|+.+.....+. .|.+|..-|.+|+
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q--------------tfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ--------------TFEGHEHYVMQVA 147 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee--------------EEcCcceEEEEEE
Confidence 999985 5678889999999999999999999999999999997432222211 2557888899999
Q ss_pred Ecc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC--eEEEEecCCCCCCCCeEEEEeC
Q 000992 181 WRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 181 Wsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~--~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
|.| |...|| +++. |||||||+......-.|+++|...|+++.+=|-|. +|.||++| .+|++|+-
T Consensus 148 fnPkD~ntFa-S~sL------DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD------~tiKvWDy 214 (794)
T KOG0276|consen 148 FNPKDPNTFA-SASL------DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD------LTIKVWDY 214 (794)
T ss_pred ecCCCcccee-eeec------cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC------ceEEEeec
Confidence 999 667999 6775 69999999977778889999999999999988774 78888885 57999995
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1196)
....- .-+|.+ |...|..+.|.|.=.++++|++|+ ||+||+.++|. +-.++.+.-...++++=++.+++ +.+
T Consensus 215 Qtk~C-V~TLeG-Ht~Nvs~v~fhp~lpiiisgsEDG---TvriWhs~Ty~--lE~tLn~gleRvW~I~~~k~~~~-i~v 286 (794)
T KOG0276|consen 215 QTKSC-VQTLEG-HTNNVSFVFFHPELPIIISGSEDG---TVRIWNSKTYK--LEKTLNYGLERVWCIAAHKGDGK-IAV 286 (794)
T ss_pred chHHH-HHHhhc-ccccceEEEecCCCcEEEEecCCc---cEEEecCccee--hhhhhhcCCceEEEEeecCCCCe-EEE
Confidence 32110 002333 456799999999999999999999 99999999875 33344442222255555554443 666
Q ss_pred EecCCcEEEE--------------EEEEeeecC----C-Cee---EEEEcCCEEEEeeccccCCCCCceeeeecC-CCCE
Q 000992 338 WTLDGQITTY--------------NFIWTTAVM----E-NST---ALVIDGSKILVTPLSLSLMPPPMYLFSLKF-PTAV 394 (1196)
Q Consensus 338 ~~~~g~~~~~--------------~~~~~~~~~----d-~~~---v~viDg~~l~lt~l~~~~vpppm~~~~l~~-~~~V 394 (1196)
+...|.+.+. .+.|+.... + ..+ -.+-||.. -|++.+.+.. .-..
T Consensus 287 G~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgEr------------L~LsvKeLgs~eiyP 354 (794)
T KOG0276|consen 287 GFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGER------------LPLSVKELGSVEIYP 354 (794)
T ss_pred eccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCcc------------ccchhhhccccccch
Confidence 6666654321 123333200 0 000 01222322 2333333321 1122
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceE
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY 474 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~ 474 (1196)
..++-||+| .+++...||.-.||..-. +-- ...+.-..+.|++|..-.|+-- +++.++
T Consensus 355 q~L~hsPNG---rfV~VcgdGEyiIyTala------~Rn-----------K~fG~~~eFvw~~dsne~avRe--s~~~vk 412 (794)
T KOG0276|consen 355 QTLAHSPNG---RFVVVCGDGEYIIYTALA------LRN-----------KAFGSGLEFVWAADSNEFAVRE--SNGNVK 412 (794)
T ss_pred HHhccCCCC---cEEEEecCccEEEEEeee------hhh-----------cccccceeEEEcCCCCeEEEEe--cCCceE
Confidence 456778998 666777899998887422 110 1234567788999944455432 224555
Q ss_pred EE
Q 000992 475 FR 476 (1196)
Q Consensus 475 ~~ 476 (1196)
++
T Consensus 413 i~ 414 (794)
T KOG0276|consen 413 IF 414 (794)
T ss_pred EE
Confidence 55
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=1.3e-22 Score=215.61 Aligned_cols=284 Identities=15% Similarity=0.161 Sum_probs=216.4
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC-CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
|++| .++|.++.|++|++.|+++|.||.+++||.-| .+...+.--..+|.+.||||.|+.+|.|+-|+...+++.
T Consensus 51 LkGH----~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 51 LKGH----LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eccc----ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 6777 47999999999999999999999999999876 455555544679999999999999999999998877643
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
...-. +....| ...+.+|.+.+.+..|-+|++.+- +| +|.+.-+||.++|+....+.+|.+-|
T Consensus 127 s~~d~--------~g~~~v-~r~l~gHtgylScC~f~dD~~ilT--~S------GD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 127 STRDA--------EGNVRV-SRELAGHTGYLSCCRFLDDNHILT--GS------GDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred ccccc--------ccccee-eeeecCccceeEEEEEcCCCceEe--cC------CCceEEEEEcccceEEEEecCCcccE
Confidence 21100 000111 123447888899999999998765 44 57999999999999999999999999
Q ss_pred eEEEEcC-CCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 226 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 226 ~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
.+|+++| +++.++||+-|+ ..++|+ |.|.-.+.| ++ ++..|++|+|-|+|.-+|+|+.|+ +.+++|
T Consensus 190 ~slsl~p~~~ntFvSg~cD~------~aklWD~R~~~c~qtF--~g-hesDINsv~ffP~G~afatGSDD~---tcRlyD 257 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDK------SAKLWDVRSGQCVQTF--EG-HESDINSVRFFPSGDAFATGSDDA---TCRLYD 257 (343)
T ss_pred EEEecCCCCCCeEEeccccc------ceeeeeccCcceeEee--cc-cccccceEEEccCCCeeeecCCCc---eeEEEe
Confidence 9999999 999999999875 488999 556444434 33 456799999999999999999999 999999
Q ss_pred ecCCEEEEEEEEE-EecC---Cc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 304 FSNNHWYLKYEIR-YLRR---DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 304 ~~n~~wylkq~l~-~~~~---~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
+...+ ++. |.+. .+ +++.||..|.+ |..+..+.... +|++- -|.++
T Consensus 258 lRaD~-----~~a~ys~~~~~~gitSv~FS~SGRl-Lfagy~d~~c~----vWDtl----------k~e~v--------- 308 (343)
T KOG0286|consen 258 LRADQ-----ELAVYSHDSIICGITSVAFSKSGRL-LFAGYDDFTCN----VWDTL----------KGERV--------- 308 (343)
T ss_pred ecCCc-----EEeeeccCcccCCceeEEEcccccE-EEeeecCCcee----Eeecc----------ccceE---------
Confidence 98643 333 3222 12 88999987764 44444343332 34321 11111
Q ss_pred CCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 379 MPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 379 vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
-.| +|.+.|.++..+||| ..+|+++.|.+++||.
T Consensus 309 -------g~L~GHeNRvScl~~s~DG--~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 -------GVLAGHENRVSCLGVSPDG--MAVATGSWDSTLRIWA 343 (343)
T ss_pred -------EEeeccCCeeEEEEECCCC--cEEEecchhHheeecC
Confidence 112 589999999999999 8999999999999994
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.4e-21 Score=228.67 Aligned_cols=294 Identities=13% Similarity=0.140 Sum_probs=225.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
..+|-+++|+|.-..+.++..+|.|.+||-.-+. ++....|+|+|..+.|.|++-+.++|+.|-+|++|+-. ...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk----~rr 84 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK----TRR 84 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc----cce
Confidence 3589999999999999999999999999998654 45666789999999999999999999999999999732 122
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
++-+.. +|.+.|.++.|.+.--++. ++| .|.||||||-.++.++.++.+|...|.+-+|.|.
T Consensus 85 clftL~-----------GHlDYVRt~~FHheyPWIl-SAS------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 85 CLFTLL-----------GHLDYVRTVFFHHEYPWIL-SAS------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT 146 (1202)
T ss_pred ehhhhc-----------cccceeEEeeccCCCceEE-Ecc------CCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence 232222 7788999999999999999 566 4789999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEE----------------------------EEeccCCCCcEEEEEEccCCC
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLERSS----------------------------FDINEQIDSTVELLKWNCMSD 285 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~----------------------------f~l~~~~~~~V~~laWSpDg~ 285 (1196)
-.+|+|+|-| .+|++|+-.|++.+. +.|.+ |+..|+.++|.|.=.
T Consensus 147 EDlIVSaSLD------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 147 EDLIVSASLD------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLP 219 (1202)
T ss_pred cceEEEeccc------ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcc
Confidence 9999999997 469999988876432 11222 345699999999999
Q ss_pred eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEc
Q 000992 286 LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365 (1196)
Q Consensus 286 ~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viD 365 (1196)
++++|+.|+ .|+||.++..+.+-+.+.+.|.+.+.++.|||.... +...+.|+
T Consensus 220 liVSG~DDR---qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l-IlSnsEDk----------------------- 272 (1202)
T KOG0292|consen 220 LIVSGADDR---QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL-ILSNSEDK----------------------- 272 (1202)
T ss_pred eEEecCCcc---eeeEEEeccccceeehhhhcccCCcceEEecCccce-eEecCCCc-----------------------
Confidence 999999999 899999987665455666677667788999996543 22222233
Q ss_pred CCEEEEeeccccCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCC
Q 000992 366 GSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGT 434 (1196)
Q Consensus 366 g~~l~lt~l~~~~vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~ 434 (1196)
.+++|++... .+.+++. -.+.-|.+|-+|.. +++|++ +|+-+.+|.++-.....++.|+
T Consensus 273 --sirVwDm~kR-----t~v~tfrrendRFW~laahP~l--NLfAAg-HDsGm~VFkleRErpa~~v~~n 332 (1202)
T KOG0292|consen 273 --SIRVWDMTKR-----TSVQTFRRENDRFWILAAHPEL--NLFAAG-HDSGMIVFKLERERPAYAVNGN 332 (1202)
T ss_pred --cEEEEecccc-----cceeeeeccCCeEEEEEecCCc--ceeeee-cCCceEEEEEcccCceEEEcCC
Confidence 3444444321 1224443 24568999999998 777766 8888889988743332234443
No 31
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.92 E-value=1.3e-21 Score=220.61 Aligned_cols=231 Identities=11% Similarity=0.129 Sum_probs=174.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-------CCCEEEEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-------EKEALIVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-------d~~~La~as 94 (1196)
.+++..|-. +..+|++++|++++.|.- .+.+. ..+..+|.++ . .++++..| ..+.+++.+
T Consensus 16 ~vc~v~w~~-~eei~~~~dDh~~~~~~~--~~~~s-~~~~~~p~df-----~----pt~~h~~~rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 16 KVCCVDWSS-NEEIYFVSDDHQIFKWSD--VSRDS-VEVAKLPDDF-----V----PTDMHLGGRSSGGGKGSDTLLICS 82 (737)
T ss_pred eEEeecccc-cceEEEeccCceEEEeec--ccchh-hhhhhCCccc-----C----CccccccccccCCCCCcceEEEEc
Confidence 455666655 455666666666666554 33333 2344455552 1 22222222 236899999
Q ss_pred CCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC----------ceeeeeeccccc-----
Q 000992 95 SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW----------DLLYENPLEELA----- 159 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~----------d~~~~~~l~~~~----- 159 (1196)
.||.+.|.+..+..-..+..|.+.|.|.+|||||.-|.++++||.|++|+|.+ .+++...+.+..
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 99999999987743347788899999999999999999999999999999875 334444444443
Q ss_pred -Cccccc---------cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 160 -EGFDVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 160 -~~~~Vs---------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.+++++ ..+|++||+-|.+++|++....++ +++ +|..+||||. .|+.+.++.+|+..+.++|
T Consensus 163 c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~-sgG------ED~kfKvWD~-~G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 163 CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA-SGG------EDFRFKIWDA-QGANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecCCeEEEeecccccceeEEeccCcEEEEeecCcccccee-ecC------CceeEEeecc-cCcccccCChhccceeeee
Confidence 344443 457889999999999999999999 565 6899999999 9999999999999999999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
|.|+ ++.|.+|.. +.+ +..+..++|..|+|||||+.+|.|+..+
T Consensus 235 ~npd-~~~~v~S~n-------t~R-------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-------TAR-------------FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eccc-cceeeeeee-------eee-------------ecCCCccceEEEEEcCCCceeeccccCc
Confidence 9999 888888763 333 2234567899999999999999999987
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=6.9e-22 Score=217.60 Aligned_cols=276 Identities=17% Similarity=0.248 Sum_probs=206.2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-ceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-d~~~~~ 153 (1196)
+.|.++.|+|+++.|++++.+|.|.+|+..++.. .....|...|.++.|+|+++.|++++.++.|.+|+..- ..+..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~- 88 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT- 88 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE-
Confidence 6899999999999999999999999999987643 34445678899999999999999999999999987432 12211
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
+..|...+.++.|+|++++++ +++ .++.+++||..+++.......+.+.+.+++|+|+
T Consensus 89 ---------------~~~~~~~i~~~~~~~~~~~~~-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 89 ---------------LTGHTSYVSSVAFSPDGRILS-SSS------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred ---------------EeccCCcEEEEEEcCCCCEEE-Eec------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc
Confidence 223455789999999999888 554 3689999999778888888888888999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
+++|++++.+ ..|.+|+.+ +.....+. .+...|..++|+|+++.|++++.++ .|++|+...... .
T Consensus 147 ~~~l~~~~~~------~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~~--~ 212 (289)
T cd00200 147 GTFVASSSQD------GTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDG---TIKLWDLSTGKC--L 212 (289)
T ss_pred CCEEEEEcCC------CcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCC---cEEEEECCCCce--e
Confidence 9999998754 469999975 33333332 2345799999999999999999888 899999986432 2
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCC
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFP 391 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~ 391 (1196)
..+..+......+.|+|++. .+.....+|.+..++ .. .+..+ ..+ .|.
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~----~~----------~~~~~----------------~~~~~~~ 261 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWD----LR----------TGECV----------------QTLSGHT 261 (289)
T ss_pred cchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEE----cC----------CceeE----------------EEccccC
Confidence 23323322337789999843 234433355554322 11 01111 111 356
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 392 ~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
..|.+++|+|++ +.|++++.||.|++|+
T Consensus 262 ~~i~~~~~~~~~--~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDG--KRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCC--CEEEEecCCCeEEecC
Confidence 789999999998 8999999999999996
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=7.6e-23 Score=246.92 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=210.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe--E-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--T-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~--~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
..|.++.|+|||+.|+.++.+++|++|+..+.. . .....|..+|.+++|||||+.|++++.|++|++|+.. ...
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~---~~~ 236 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK---DDG 236 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc---CCC
Confidence 579999999999999999999999999997655 3 3435578999999999999999999999999988641 111
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
..+. .+++|.+.|.+++|+|+|++++ +++ .|++|||||..+|++..++++|.+.+.+++|+|
T Consensus 237 ~~~~-----------~l~gH~~~v~~~~f~p~g~~i~-Sgs------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 237 RNLK-----------TLKGHSTYVTSVAFSPDGNLLV-SGS------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred eEEE-----------EecCCCCceEEEEecCCCCEEE-Eec------CCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 2222 2337788899999999999888 565 579999999988999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEE-EEEeccCCCC-cEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDS-TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~-~f~l~~~~~~-~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+|++|++++.| ..|++|+..+.... ...+...... .+..+.|||+|++|++++.|+ ++++|++...+-
T Consensus 299 d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~---~~~~w~l~~~~~- 368 (456)
T KOG0266|consen 299 DGNLLVSASYD------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR---TLKLWDLRSGKS- 368 (456)
T ss_pred CCCEEEEcCCC------ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC---eEEEEEccCCcc-
Confidence 99999999875 46999997544321 0112222222 689999999999999999998 899999987542
Q ss_pred EEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
..++..+.... ...+++.. . +.+..++....+..+.+|++......+.+ ..|
T Consensus 369 -~~~~~~~~~~~-~~~~~~~~-------~---------------~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h 420 (456)
T KOG0266|consen 369 -VGTYTGHSNLV-RCIFSPTL-------S---------------TGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGH 420 (456)
T ss_pred -eeeecccCCcc-eeEecccc-------c---------------CCCCeEEEEeCCceEEEEeCCccchhhhh----cCC
Confidence 23333322221 01111110 0 11122233334446667766532221111 135
Q ss_pred -CCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCC
Q 000992 391 -PTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLP 423 (1196)
Q Consensus 391 -~~~V~~Vafspdg~~~~lAs~~--~dg~v~lw~~~ 423 (1196)
...|..++|+|.. +.+++.+ .|+.+++|..+
T Consensus 421 ~~~~~~~~~~~~~~--~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 421 SKAAVSDLSSHPTE--NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCceeccccCCCc--CeeeecCcCCCceEEEecCC
Confidence 6788999999999 8999998 78999999864
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=1.7e-23 Score=247.25 Aligned_cols=238 Identities=16% Similarity=0.177 Sum_probs=198.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC--------------------------------CeEE-EeeeecCcEEE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG--------------------------------NATE-VVGRVEGGVRF 121 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~--------------------------------~~~e-~vg~~~~~I~~ 121 (1196)
...+++..|++|+.+||.|..|-.|++|.... +..+ ..| |.++|..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G-H~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG-HSGPVYG 456 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec-CCCceee
Confidence 35789999999999999999999999998751 1122 345 6999999
Q ss_pred EEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCC
Q 000992 122 ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1196)
Q Consensus 122 ~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~ 200 (1196)
.+||||-++|+++|+|++|++|+. .|..+.. +++|...|+.+.|+|-|.||| +++ .
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~----------------y~GH~~PVwdV~F~P~GyYFa-tas------~ 513 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI----------------YKGHLAPVWDVQFAPRGYYFA-TAS------H 513 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEE----------------ecCCCcceeeEEecCCceEEE-ecC------C
Confidence 999999999999999999999973 3443322 235667889999999999999 566 4
Q ss_pred CCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEE
Q 000992 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLK 279 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~la 279 (1196)
|++-|+|..+.-....++.+|-+-+.+++|+|+++++|+||.| .+|++|+ .+|...+.|+ + |.+.|.+|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD------~tVRlWDv~~G~~VRiF~--G-H~~~V~al~ 584 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD------RTVRLWDVSTGNSVRIFT--G-HKGPVTALA 584 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC------ceEEEEEcCCCcEEEEec--C-CCCceEEEE
Confidence 7999999998888888999999999999999999999999986 4799999 5677766663 3 467899999
Q ss_pred EccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCe
Q 000992 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1196)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1196)
|||+|.+||+|+.|+ .|+|||+.+..- + ..
T Consensus 585 ~Sp~Gr~LaSg~ed~---~I~iWDl~~~~~-------------------------v--~~-------------------- 614 (707)
T KOG0263|consen 585 FSPCGRYLASGDEDG---LIKIWDLANGSL-------------------------V--KQ-------------------- 614 (707)
T ss_pred EcCCCceEeecccCC---cEEEEEcCCCcc-------------------------h--hh--------------------
Confidence 999999999999999 999999876320 0 00
Q ss_pred eEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
-.+|.+.|.+|+||.|| ++||+++.|++|++||+..
T Consensus 615 ---------------------------l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 615 ---------------------------LKGHTGTIYSLSFSRDG--NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ---------------------------hhcccCceeEEEEecCC--CEEEecCCCCeEEEEEchh
Confidence 02356788999999999 9999999999999999864
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=8.4e-22 Score=254.22 Aligned_cols=292 Identities=11% Similarity=0.072 Sum_probs=207.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCC----e-----EEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEe
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN----A-----TEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~----~-----~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~ 144 (1196)
.+.|.+++|+|+|+.||+|+.||+|+||+..+. . ..... +...|.+++|+| ++.+||+++.||+|++|+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 568999999999999999999999999997531 1 11122 246799999987 488999999999999986
Q ss_pred cc-CceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 145 HD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 145 ~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
.. +..+. .+.+|.+.|.+++|+| ||.+|+ +++ .|++|+|||..+|....+...+
T Consensus 562 ~~~~~~~~----------------~~~~H~~~V~~l~~~p~~~~~L~-Sgs------~Dg~v~iWd~~~~~~~~~~~~~- 617 (793)
T PLN00181 562 VARSQLVT----------------EMKEHEKRVWSIDYSSADPTLLA-SGS------DDGSVKLWSINQGVSIGTIKTK- 617 (793)
T ss_pred CCCCeEEE----------------EecCCCCCEEEEEEcCCCCCEEE-EEc------CCCEEEEEECCCCcEEEEEecC-
Confidence 32 22221 2336677899999996 899999 565 4699999999889888877644
Q ss_pred CceeEEEE-cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEE
Q 000992 223 FMGAVLEW-MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1196)
Q Consensus 223 ~~v~slaw-sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~l 301 (1196)
..+.+++| +|+|++||+|+.| ..|.+|+..........+.. +...|..++|+ |+..|++++.|+ +|+|
T Consensus 618 ~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~lvs~s~D~---~iki 686 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSSTLVSSSTDN---TLKL 686 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCEEEEEECCC---EEEE
Confidence 56789999 5679999999986 46999995322211122333 35679999997 788999999999 9999
Q ss_pred EEecCC----EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecccc
Q 000992 302 CFFSNN----HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1196)
Q Consensus 302 W~~~n~----~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~ 377 (1196)
|++... .|.....+..+......+.|+|++.. |++++.+|.+.+ |+... +..+..+.+...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~-lasgs~D~~v~i----w~~~~----------~~~~~s~~~~~~ 751 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY-IATGSETNEVFV----YHKAF----------PMPVLSYKFKTI 751 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE-EEEEeCCCEEEE----EECCC----------CCceEEEecccC
Confidence 998632 23233444444333477899998764 777777887654 33220 001111111111
Q ss_pred CCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 378 LMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 378 ~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
. +...... .+...|.+|+|+|++ +.|++++.||+|++|+.
T Consensus 752 ~---~~~~~~~~~~~~~V~~v~ws~~~--~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 D---PVSGLEVDDASQFISSVCWRGQS--STLVAANSTGNIKILEM 792 (793)
T ss_pred C---cccccccCCCCcEEEEEEEcCCC--CeEEEecCCCcEEEEec
Confidence 1 1111111 245679999999999 89999999999999985
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.90 E-value=1.6e-21 Score=218.17 Aligned_cols=333 Identities=14% Similarity=0.155 Sum_probs=241.4
Q ss_pred EEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCceeeeee---cc-ccc-CccccccCccccCCCCeEEEEEcc
Q 000992 110 EVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYENP---LE-ELA-EGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~~---l~-~~~-~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
.+.+ |+..|.+.+|+|--+ +||++++|-+.++|+..++.-.... ++ ... -.+.+ +....|++++|+.
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~------~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSV------PSNKDVTSLDWNN 245 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccC------CccCCcceEEecC
Confidence 3445 788999999999877 9999999999999876552211110 00 000 01111 2345789999999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeE
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLER 262 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~ 262 (1196)
||.+|| .++ .++.+|||+. +|.+.+++..|.++|.+|.|+-.|++|++++.|+ ++++|+. .|...
T Consensus 246 ~G~~La-tG~------~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~------ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 246 DGTLLA-TGS------EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDG------TTILWDAHTGTVK 311 (524)
T ss_pred CCCeEE-Eee------cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCc------cEEEEeccCceEE
Confidence 999999 676 4689999999 9999999999999999999999999999999975 5888984 67777
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCC
Q 000992 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.+|.+.. ..-.+|.|-.+.+ .|+.+.|+ .|.++.+..-.. +.++..|++.+..+.|+|.+.+ |...+
T Consensus 312 q~f~~~s---~~~lDVdW~~~~~-F~ts~td~---~i~V~kv~~~~P--~~t~~GH~g~V~alk~n~tg~L-LaS~S--- 378 (524)
T KOG0273|consen 312 QQFEFHS---APALDVDWQSNDE-FATSSTDG---CIHVCKVGEDRP--VKTFIGHHGEVNALKWNPTGSL-LASCS--- 378 (524)
T ss_pred Eeeeecc---CCccceEEecCce-EeecCCCc---eEEEEEecCCCc--ceeeecccCceEEEEECCCCce-EEEec---
Confidence 7777652 2235788877765 56666777 799988875332 3455566666688999998864 44433
Q ss_pred cEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCC-------CEEEEEECC
Q 000992 343 QITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSK-------NCLAAILSD 414 (1196)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~-------~~lAs~~~d 414 (1196)
|+.++++|.... -+|.+.+ .|...|..+.|||+|.. .++|+++.|
T Consensus 379 ----------------------dD~TlkiWs~~~-----~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 379 ----------------------DDGTLKIWSMGQ-----SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD 431 (524)
T ss_pred ----------------------CCCeeEeeecCC-----CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC
Confidence 334666665433 3455555 48888999999999853 579999999
Q ss_pred CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhh
Q 000992 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIE 494 (1196)
Q Consensus 415 g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1196)
++|++|+...+.++.++.+ |...|..++|+|+|+++|+++-+ ..+.+|....
T Consensus 432 stV~lwdv~~gv~i~~f~k------------H~~pVysvafS~~g~ylAsGs~d--g~V~iws~~~-------------- 483 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMK------------HQEPVYSVAFSPNGRYLASGSLD--GCVHIWSTKT-------------- 483 (524)
T ss_pred CeEEEEEccCCceeEeecc------------CCCceEEEEecCCCcEEEecCCC--CeeEeccccc--------------
Confidence 9999999988777655543 34579999999999999998765 5677776531
Q ss_pred hhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEE
Q 000992 495 LACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1196)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~ 550 (1196)
+.. .....-.+-|..+++|. .++.+.+.-.||.|...
T Consensus 484 ---------------~~l---~~s~~~~~~Ifel~Wn~-~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 484 ---------------GKL---VKSYQGTGGIFELCWNA-AGDKLGACASDGSVCVL 520 (524)
T ss_pred ---------------hhe---eEeecCCCeEEEEEEcC-CCCEEEEEecCCCceEE
Confidence 001 12233355678899988 77888887788777654
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=235.59 Aligned_cols=293 Identities=15% Similarity=0.156 Sum_probs=212.1
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
..+++...|.++.|||||+.||+++.++.+++|.... .....++.. .+|...|..++|+|||++++
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~--~~~~~~~~l-----------~~h~~~v~~~~fs~d~~~l~- 219 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEG--IKSNLLREL-----------SGHTRGVSDVAFSPDGSYLL- 219 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeeccc--ccchhhccc-----------cccccceeeeEECCCCcEEE-
Confidence 3455578899999999999999999999999886411 110011111 25778899999999999999
Q ss_pred eeccccccCCCCEEEEEEC-CCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec
Q 000992 191 LSEFCNSSKLHKRLKVWER-DSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN 268 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~-~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~ 268 (1196)
.++ .|.+|||||. ..|....++.+|...+.+++|+|+|++|+||+.|. +|++|+.. |...+. |.
T Consensus 220 s~s------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~--l~ 285 (456)
T KOG0266|consen 220 SGS------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRK--LK 285 (456)
T ss_pred Eec------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEe--ee
Confidence 565 4799999999 66789999999999999999999999999999975 69999965 444432 33
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-c-EEEEEccCCCceEEEEecCCcEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
. +...|..++|++||.+|++++.|+ .|++||+.+++-.+..++...... . ..+.|+|++.. +.+.+
T Consensus 286 ~-hs~~is~~~f~~d~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~------- 353 (456)
T KOG0266|consen 286 G-HSDGISGLAFSPDGNLLVSASYDG---TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSAS------- 353 (456)
T ss_pred c-cCCceEEEEECCCCCEEEEcCCCc---cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEec-------
Confidence 3 356899999999999999999999 999999998752112344433333 3 77888887764 33333
Q ss_pred EEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCC---CEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT---AVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~---~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+++++++|.++...++-... .|.. .+.+..+++.+ ..+.+++.|+.|.+|+..
T Consensus 354 ------------------~d~~~~~w~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 354 ------------------LDRTLKLWDLRSGKSVGTYT----GHSNLVRCIFSPTLSTGG--KLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ------------------CCCeEEEEEccCCcceeeec----ccCCcceeEecccccCCC--CeEEEEeCCceEEEEeCC
Confidence 33455555554322211110 1222 34455667888 899999999999999998
Q ss_pred CCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 424 APDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 424 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+......+.|+. ...+..++|.+...++++.+......+.+|..
T Consensus 410 s~~~~~~l~~h~-----------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 410 SGGILQRLEGHS-----------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccchhhhhcCCC-----------CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 765555555542 34678889999999999887544466777754
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=1e-20 Score=208.33 Aligned_cols=273 Identities=15% Similarity=0.167 Sum_probs=208.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|+++++.|++++.++.+..|+. ..+..... +..+ ...+..+.|+|+++.|++++.+|.|.+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~--~~~~~~~~-------~~~~----~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDL--ETGELLRT-------LKGH----TGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEe--eCCCcEEE-------EecC----CcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 7899999999999999999999999998 43332111 2222 346789999999999999999999999
Q ss_pred EECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
|+..++ .+.....|...|.+++|+|+++++++++.++.|.+|+.. ....... ..|...+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~i~~~ 141 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL----------------RGHTDWVNSV 141 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe----------------ccCCCcEEEE
Confidence 999874 334444567789999999999999988889999998743 3322222 1345678999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
+|+|++++++ +++ .++.|++||..+++.......+.+.+.+++|+|+|+.|++++.+ ..|.+|+..
T Consensus 142 ~~~~~~~~l~-~~~------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~ 208 (289)
T cd00200 142 AFSPDGTFVA-SSS------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLST 208 (289)
T ss_pred EEcCcCCEEE-EEc------CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC------CcEEEEECCC
Confidence 9999999998 554 36899999997888888888888889999999999999888874 469999965
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
+.....+ . .+...|..++|+|++.++++++.++ .|++|+..+.. ....+..+......+.|+|++.. |.++
T Consensus 209 ~~~~~~~--~-~~~~~i~~~~~~~~~~~~~~~~~~~---~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 279 (289)
T cd00200 209 GKCLGTL--R-GHENGVNSVAFSPDGYLLASGSEDG---TIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGKR-LASG 279 (289)
T ss_pred Cceecch--h-hcCCceEEEEEcCCCcEEEEEcCCC---cEEEEEcCCce--eEEEccccCCcEEEEEECCCCCE-EEEe
Confidence 3322222 1 2345799999999999999988777 89999998643 23344433333488999998764 6666
Q ss_pred ecCCcEE
Q 000992 339 TLDGQIT 345 (1196)
Q Consensus 339 ~~~g~~~ 345 (1196)
+.+|.+.
T Consensus 280 ~~d~~i~ 286 (289)
T cd00200 280 SADGTIR 286 (289)
T ss_pred cCCCeEE
Confidence 6677654
No 39
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.89 E-value=7.1e-21 Score=202.37 Aligned_cols=284 Identities=11% Similarity=0.048 Sum_probs=210.2
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
++..|-+.|.++-||||.+.|+++|.||.+++|+. .-+...-+++. ...|...+|+|.|+++|
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~----------------s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP----------------SSWVMTCAYSPSGNFVA 113 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC----------------ceeEEEEEECCCCCeEE
Confidence 34446889999999999999999999999999862 11222222322 24679999999999999
Q ss_pred EeeccccccCCCCEEEEEECC----CC--cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeE
Q 000992 190 TLSEFCNSSKLHKRLKVWERD----SG--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLER 262 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~----~G--~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~ 262 (1196)
+++. |+..-||+.. +| ...+.+.+|.+.+.+..|-+|+.+|. +|.| .+..+|+. .|++.
T Consensus 114 -cGGL------dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT-~SGD------~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 114 -CGGL------DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILT-GSGD------MTCALWDIETGQQT 179 (343)
T ss_pred -ecCc------CceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEe-cCCC------ceEEEEEcccceEE
Confidence 8875 4667778764 23 23445778999999999999877654 4444 46999994 57777
Q ss_pred EEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecC
Q 000992 263 SSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD 341 (1196)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~ 341 (1196)
..|. .|.+.|.+|+.+| |++..++++-|+ +.+|||+... +.+|.+..|..+...+.|+|+|.. +..++.|
T Consensus 180 ~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~---~aklWD~R~~--~c~qtF~ghesDINsv~ffP~G~a-fatGSDD 250 (343)
T KOG0286|consen 180 QVFH---GHTGDVMSLSLSPSDGNTFVSGGCDK---SAKLWDVRSG--QCVQTFEGHESDINSVRFFPSGDA-FATGSDD 250 (343)
T ss_pred EEec---CCcccEEEEecCCCCCCeEEeccccc---ceeeeeccCc--ceeEeecccccccceEEEccCCCe-eeecCCC
Confidence 6653 3467899999999 999999999999 9999999876 358888888777789999999864 6666666
Q ss_pred CcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 342 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 342 g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+....++..- +..+.+.. +++ ...+|++|+||..| ++|.++..|.++.+||
T Consensus 251 ~tcRlyDlRa--------------D~~~a~ys------~~~-------~~~gitSv~FS~SG--RlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 251 ATCRLYDLRA--------------DQELAVYS------HDS-------IICGITSVAFSKSG--RLLFAGYDDFTCNVWD 301 (343)
T ss_pred ceeEEEeecC--------------CcEEeeec------cCc-------ccCCceeEEEcccc--cEEEeeecCCceeEee
Confidence 6655554431 11121111 000 13468999999999 8999999999999999
Q ss_pred CCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000992 422 LPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 422 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1196)
.--.+....+. +|.++|..+.-+|||.-|++++.+ +.+.+|
T Consensus 302 tlk~e~vg~L~------------GHeNRvScl~~s~DG~av~TgSWD--s~lriW 342 (343)
T KOG0286|consen 302 TLKGERVGVLA------------GHENRVSCLGVSPDGMAVATGSWD--STLRIW 342 (343)
T ss_pred ccccceEEEee------------ccCCeeEEEEECCCCcEEEecchh--Hheeec
Confidence 74333332333 456799999999999999999887 566665
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.9e-22 Score=216.99 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=200.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC-CeE---E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NAT---E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~-~~~---e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
.+.|+-+.||++|++||+||.|.+.++|.... +.+ . ++| |..+|..+.||||.++|++++.|..+.+| |.
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~~e~~~lw----Dv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGFDEVLSLW----DV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCchHheeec----cC
Confidence 57899999999999999999999999998743 232 2 555 57899999999999999999999888765 44
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVL 228 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~sl 228 (1196)
-++...+.-.+ ++...+.+.+|-|||..|+ +|+ .||+|..||. +|......+++. .-++++
T Consensus 299 ~tgd~~~~y~~----------~~~~S~~sc~W~pDg~~~V-~Gs------~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 299 DTGDLRHLYPS----------GLGFSVSSCAWCPDGFRFV-TGS------PDRTIIMWDL-DGNILGNWEGVRDPKVHDL 360 (519)
T ss_pred Ccchhhhhccc----------CcCCCcceeEEccCCceeE-ecC------CCCcEEEecC-CcchhhcccccccceeEEE
Confidence 44443332221 2235678999999999999 676 4799999999 999988888765 458999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+.+|||+.+.+...|+ .|+++++....... +- ..+..|.+++.|.||++..+-..+. .|++||...
T Consensus 361 ait~Dgk~vl~v~~d~------~i~l~~~e~~~dr~--li-se~~~its~~iS~d~k~~LvnL~~q---ei~LWDl~e-- 426 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDK------KIRLYNREARVDRG--LI-SEEQPITSFSISKDGKLALVNLQDQ---EIHLWDLEE-- 426 (519)
T ss_pred EEcCCCcEEEEEeccc------ceeeechhhhhhhc--cc-cccCceeEEEEcCCCcEEEEEcccC---eeEEeecch--
Confidence 9999999887777654 58888764322110 11 1235799999999999999999988 899999984
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
|.+.+....+.. +...+....+.+ ++.-++....+.+|++|...... |. ..+
T Consensus 427 ~~lv~kY~Ghkq----------~~fiIrSCFgg~-------------~~~fiaSGSED~kvyIWhr~sgk---ll--~~L 478 (519)
T KOG0293|consen 427 NKLVRKYFGHKQ----------GHFIIRSCFGGG-------------NDKFIASGSEDSKVYIWHRISGK---LL--AVL 478 (519)
T ss_pred hhHHHHhhcccc----------cceEEEeccCCC-------------CcceEEecCCCceEEEEEccCCc---ee--Eee
Confidence 322222222111 111111111110 11112222344566666654322 12 223
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 389 -~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+|...|++|+|+|... .++|+++.||||+||....
T Consensus 479 sGHs~~vNcVswNP~~p-~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADP-EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCH-HHhhccCCCCeEEEecCCc
Confidence 4788999999999875 8899999999999998763
No 41
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=2.7e-21 Score=235.62 Aligned_cols=305 Identities=16% Similarity=0.167 Sum_probs=210.5
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEe--CCceEEEEeccCceee-eeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTT--GFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s--~d~tV~l~~~~~d~~~-~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
.++|++..|.++..+|||..+|+++ .|+.+++|+.+ ++. +.......-.+++ .|...|+..+.++.|||||+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~--~vl~~~~~~~~~l~k~l--~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQD--PVLDEKEEKNENLPKHL--CTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccc--cccchhhhhhcccchhh--eeeccccCceeEEEECCCCCe
Confidence 5677777899999999999999999 89999999754 221 1110000001111 223367889999999999999
Q ss_pred EEEeeccccccCCCCEEEEEECCC-------C-----------cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDS-------G-----------TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~-------G-----------~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
|| +|+ +|+.|.||.+.+ | +...++.+|++.|..++|+|++.++||++-|
T Consensus 84 lA-sGS------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D------ 150 (942)
T KOG0973|consen 84 LA-SGS------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD------ 150 (942)
T ss_pred Ee-ecc------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc------
Confidence 99 776 579999999952 1 2556778899999999999999999999997
Q ss_pred CeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC----Cc--
Q 000992 250 PSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR----DG-- 322 (1196)
Q Consensus 250 ~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~----~~-- 322 (1196)
..|.+|+.. ..+.. ++++ |...|..+.|.|-|+++|+.+.|+ +|++|.+.+ |-+-+.+.-+-. ..
T Consensus 151 nsViiwn~~tF~~~~--vl~~-H~s~VKGvs~DP~Gky~ASqsdDr---tikvwrt~d--w~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLK--VLRG-HQSLVKGVSWDPIGKYFASQSDDR---TLKVWRTSD--WGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred ceEEEEccccceeee--eeec-ccccccceEECCccCeeeeecCCc---eEEEEEccc--ceeeEeeccchhhCCCccee
Confidence 469999832 21111 2333 467899999999999999999999 999999877 545555542211 11
Q ss_pred EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecC
Q 000992 323 IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSK 402 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspd 402 (1196)
..+.|||||.. |++... + -.+..+++.++-++ |.+ ...-++|.+++..|+|+|.
T Consensus 223 ~RlSWSPDG~~-las~nA---~----------n~~~~~~~IieR~t--------Wk~----~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 223 LRLSWSPDGHH-LASPNA---V----------NGGKSTIAIIERGT--------WKV----DKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred eecccCCCcCe-ecchhh---c----------cCCcceeEEEecCC--------cee----eeeeecCCCceEEEEeChH
Confidence 56899999975 433321 0 01122344444332 111 0012478999999999984
Q ss_pred --------CCC---C----EEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 403 --------SSK---N----CLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 403 --------g~~---~----~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
|.. + .+|+|+.|++|.+|....+..+ +.-++ ....+|..++|+|||..|.+++.
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl--~vi~~---------lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL--FVIHN---------LFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch--hhhhh---------hhcCceeeeeEcCCCCeEEEEec
Confidence 110 2 7899999999999998654333 11111 12247999999999988777777
Q ss_pred CCCCceEEEEee
Q 000992 468 GPRHSNYFRGAT 479 (1196)
Q Consensus 468 ~~~~~~~~~~~~ 479 (1196)
+ .++.++.+.
T Consensus 346 D--GtV~~i~Fe 355 (942)
T KOG0973|consen 346 D--GTVALIHFE 355 (942)
T ss_pred C--CeEEEEEcc
Confidence 6 577777664
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.1e-21 Score=210.28 Aligned_cols=279 Identities=14% Similarity=0.126 Sum_probs=218.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
..|+.+-|+|+--..+++++|++|++||..+++++ .+.+|.++|..++|+.-|++||+++.|-.+++|+.+ ... .+
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~--~~~-~c 185 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD--TFF-RC 185 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH--HHH-HH
Confidence 57999999999999999999999999999999886 444568889999999999999999999889888632 111 11
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
+... ++|+..|.++.|.|-|.+++ +++ .|++|+.|+..+|.+.+++.+|..++..++-+-||
T Consensus 186 ~ks~-----------~gh~h~vS~V~f~P~gd~il-S~s------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 186 IKSL-----------IGHEHGVSSVFFLPLGDHIL-SCS------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHHh-----------cCcccceeeEEEEecCCeee-ecc------cccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 1111 16777899999999999999 565 46999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccC---------------CCeeEEEEccCCcce
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCM---------------SDLLAAVVRFEEYDS 298 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpD---------------g~~LAs~~~d~~~~~ 298 (1196)
.+|||++.+ ++|++|-.+... .. .++. ++-.|..++|-|. |++|.+++.|+ +
T Consensus 248 ti~As~s~d------qtl~vW~~~t~~~k~--~lR~-hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk---t 315 (406)
T KOG0295|consen 248 TIIASCSND------QTLRVWVVATKQCKA--ELRE-HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK---T 315 (406)
T ss_pred eEEEecCCC------ceEEEEEeccchhhh--hhhc-cccceEEEEecccccCcchhhccCCCCCccEEEeecccc---e
Confidence 999999986 569999743210 11 2333 3456889999875 26999999999 9
Q ss_pred EEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
|++|+++..... -+|..|.+.+..++|||-|.+ | +...|+++|++|+++..
T Consensus 316 Ik~wdv~tg~cL--~tL~ghdnwVr~~af~p~Gky-i-------------------------~ScaDDktlrvwdl~~~- 366 (406)
T KOG0295|consen 316 IKIWDVSTGMCL--FTLVGHDNWVRGVAFSPGGKY-I-------------------------LSCADDKTLRVWDLKNL- 366 (406)
T ss_pred EEEEeccCCeEE--EEEecccceeeeeEEcCCCeE-E-------------------------EEEecCCcEEEEEeccc-
Confidence 999999987643 366666555577788886654 2 22335666777766532
Q ss_pred CCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 379 MPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 379 vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
.|.+++. |+.-|++++|..+. .++.+|+-|.++++|..
T Consensus 367 ----~cmk~~~ah~hfvt~lDfh~~~--p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 ----QCMKTLEAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ----eeeeccCCCcceeEEEecCCCC--ceEEeccccceeeeeec
Confidence 3445553 67779999999998 79999999999999974
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=4.3e-20 Score=238.45 Aligned_cols=283 Identities=9% Similarity=0.063 Sum_probs=201.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I~ 100 (1196)
.+.+++|+++++.+++++.|+.|..|+.+....... .+. .+ ... +.....|.+++|+| ++..|++++.||+|+
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~-~~--~~~--~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH-YP--VVE--LASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccc-cc--eEE--ecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 688999999999999999999999999731001110 000 00 000 11135789999987 478999999999999
Q ss_pred EEECCCCeE-EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeE
Q 000992 101 LHSVDGNAT-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 101 lw~~~~~~~-e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
+||..+++. .....|.+.|++++|+| ||.+||+++.|++|++|+. .+..+.... +...+.
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------------~~~~v~ 621 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------------TKANIC 621 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------------cCCCeE
Confidence 999987654 45555789999999997 8999999999999999973 233332221 113568
Q ss_pred EEEE-ccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isW-spDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
++.| +++|.+|| +++ .|++|++||..++. ...+..+|.+.+..++|. +|..|++++.| ..|++|
T Consensus 622 ~v~~~~~~g~~la-tgs------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D------~~ikiW 687 (793)
T PLN00181 622 CVQFPSESGRSLA-FGS------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD------NTLKLW 687 (793)
T ss_pred EEEEeCCCCCEEE-EEe------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC------CEEEEE
Confidence 9999 56799999 676 46899999986665 456677899999999997 78899999886 469999
Q ss_pred eCCC-------eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE---------EEEec
Q 000992 256 ERNG-------LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE---------IRYLR 319 (1196)
Q Consensus 256 e~nG-------l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~---------l~~~~ 319 (1196)
+... .... .+.+ +...+..++|+|+|.+||+++.|+ +|.+|+........... +....
T Consensus 688 d~~~~~~~~~~~~l~--~~~g-h~~~i~~v~~s~~~~~lasgs~D~---~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 688 DLSMSISGINETPLH--SFMG-HTNVKNFVGLSVSDGYIATGSETN---EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred eCCCCccccCCcceE--EEcC-CCCCeeEEEEcCCCCEEEEEeCCC---EEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9641 1111 2233 356788999999999999999999 99999976432110000 00111
Q ss_pred -CC-cEEEEEccCCCceEEEEecCCcEEEEE
Q 000992 320 -RD-GIRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 320 -~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
.. ...+.|+|++.. |..++.+|.+.+++
T Consensus 762 ~~~~V~~v~ws~~~~~-lva~~~dG~I~i~~ 791 (793)
T PLN00181 762 ASQFISSVCWRGQSST-LVAANSTGNIKILE 791 (793)
T ss_pred CCcEEEEEEEcCCCCe-EEEecCCCcEEEEe
Confidence 11 267888887764 66666777776543
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.7e-18 Score=199.40 Aligned_cols=347 Identities=11% Similarity=0.082 Sum_probs=246.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+-+++|-|-.--|.+.--++.|-.||. .++.. +. .+.+| .+.|.+|+|+|++..+++|+.|-.|++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDY--RM~tl---i~----rFdeH----dGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDY--RMGTL---ID----RFDEH----DGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehh--hhhhH---Hh----hhhcc----CCccceeeecCCCCeEEecCCccEEEE
Confidence 5677888887777777766888999999 66654 11 13444 478999999999999999999999999
Q ss_pred EECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..+.++- ..| |.+.|..+.|.|.-=++.++|.|+||++|+ |..-+.+. ... ||...|.+.
T Consensus 78 WnYk~rrclftL~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWN--wqsr~~ia--vlt-----------GHnHYVMcA 141 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSASDDQTIRIWN--WQSRKCIA--VLT-----------GHNHYVMCA 141 (1202)
T ss_pred Eecccceehhhhcc-ccceeEEeeccCCCceEEEccCCCeEEEEe--ccCCceEE--EEe-----------cCceEEEee
Confidence 999998774 566 588999999999999999999999999986 44333222 222 677889999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCc------------------------------EEEEeccCCCceeEEE
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT------------------------------LQASSELKAFMGAVLE 229 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~------------------------------l~~~~e~~~~~v~sla 229 (1196)
.|.|--..++ ++|. |.+|||||. .|- .-..+|+|+..|+-+|
T Consensus 142 qFhptEDlIV-SaSL------DQTVRVWDi-sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 142 QFHPTEDLIV-SASL------DQTVRVWDI-SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred ccCCccceEE-Eecc------cceEEEEee-cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 9999888898 6775 589999997 430 1235678998899999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+|.--+|+||++| ..|++|.-|-..--|. +.++ |.+.|.++-|.|.-+++.+.++|+ +|++||+....
T Consensus 214 fhpTlpliVSG~DD------RqVKlWrmnetKaWEvDtcrg-H~nnVssvlfhp~q~lIlSnsEDk---sirVwDm~kRt 283 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADD------RQVKLWRMNETKAWEVDTCRG-HYNNVSSVLFHPHQDLILSNSEDK---SIRVWDMTKRT 283 (1202)
T ss_pred ecCCcceEEecCCc------ceeeEEEeccccceeehhhhc-ccCCcceEEecCccceeEecCCCc---cEEEEeccccc
Confidence 99999999999987 4699998775332222 2334 457899999999999999999999 99999998643
Q ss_pred EEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEee---ecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 309 WYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTT---AVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 309 wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~---~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
- -|.++- .+++ +.++=||..++ ++.+..+| +.++.....- +.++.++.. +.++.|...+|+..--.+-|.
T Consensus 284 ~--v~tfrr-endRFW~laahP~lNL-fAAgHDsG-m~VFkleRErpa~~v~~n~LfY-vkd~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 284 S--VQTFRR-ENDRFWILAAHPELNL-FAAGHDSG-MIVFKLERERPAYAVNGNGLFY-VKDRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred c--eeeeec-cCCeEEEEEecCCcce-eeeecCCc-eEEEEEcccCceEEEcCCEEEE-EccceEEeeeccccccceeEe
Confidence 1 122221 2344 88889998765 55555444 4443332111 133433333 346777777776532222232
Q ss_pred eeeec-CCCCEEEEEEecCCCCCEE--EEEECCCcEEEEeCC
Q 000992 385 LFSLK-FPTAVTEMAFYSKSSKNCL--AAILSDGCLCVVDLP 423 (1196)
Q Consensus 385 ~~~l~-~~~~V~~Vafspdg~~~~l--As~~~dg~v~lw~~~ 423 (1196)
.+..+ .-.++.+++|+|.- +.+ .+-..+|+..|+...
T Consensus 358 lr~~g~~~~~~~smsYNpae--~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 358 LRRPGTLWQPPRSLSYNPAE--NAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred ccCCCcccCCcceeeecccc--CeEEEEeccCCCeEEEEEec
Confidence 22221 23567899999986 332 222356777777765
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.8e-21 Score=209.60 Aligned_cols=309 Identities=17% Similarity=0.154 Sum_probs=224.8
Q ss_pred cEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 98 LLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 98 ~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
+-..|=+.-.... ..| |...|+.+-|-|+--++|++|.|++|++|+.. ++.... -.++|.+.+
T Consensus 90 ~~~~wipRp~l~~~l~g-~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~----tg~~e~-----------~LrGHt~sv 153 (406)
T KOG0295|consen 90 TPALWIPRPNLVQKLAG-HRSSVTRVIFHPSEALVVSASEDATIKVFDTE----TGELER-----------SLRGHTDSV 153 (406)
T ss_pred ChhhcCCCCCchhhhhc-cccceeeeeeccCceEEEEecCCceEEEEEcc----chhhhh-----------hhhccccce
Confidence 3334554433333 445 68899999999999999999999999998642 221111 123777889
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
.+|+|..-|+++|++++ |-.+++||.++ -++.++..+|+..+.++.|-|-|..|+|+++|. +|+.|
T Consensus 154 ~di~~~a~Gk~l~tcSs-------Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~------tik~W 220 (406)
T KOG0295|consen 154 FDISFDASGKYLATCSS-------DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN------TIKAW 220 (406)
T ss_pred eEEEEecCccEEEecCC-------ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccc------ceeEE
Confidence 99999999999995443 45599999843 355666778888999999999999999999974 69999
Q ss_pred eC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
|- +|.-.. +++.+ ..+|..++-+-||.++|+++.|. +|++|-+.+.. .|++++.|+.-.-+++|-|+..+.
T Consensus 221 e~~tg~cv~--t~~~h-~ewvr~v~v~~DGti~As~s~dq---tl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 221 ECDTGYCVK--TFPGH-SEWVRMVRVNQDGTIIASCSNDQ---TLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYP 292 (406)
T ss_pred ecccceeEE--eccCc-hHhEEEEEecCCeeEEEecCCCc---eEEEEEeccch--hhhhhhccccceEEEEecccccCc
Confidence 95 444333 33433 46999999999999999999999 99999999864 367777665445789999987531
Q ss_pred -EEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEE
Q 000992 335 -LICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAIL 412 (1196)
Q Consensus 335 -L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~ 412 (1196)
+.-.++++. .........-++++++|+ |+.|||..+| +|.++|.+++|+|.| +.|++..
T Consensus 293 ~i~~at~~~~------------~~~~l~s~SrDktIk~wd-----v~tg~cL~tL~ghdnwVr~~af~p~G--kyi~Sca 353 (406)
T KOG0295|consen 293 SISEATGSTN------------GGQVLGSGSRDKTIKIWD-----VSTGMCLFTLVGHDNWVRGVAFSPGG--KYILSCA 353 (406)
T ss_pred chhhccCCCC------------CccEEEeecccceEEEEe-----ccCCeEEEEEecccceeeeeEEcCCC--eEEEEEe
Confidence 000010000 001122233455777765 5778999999 599999999999999 9999999
Q ss_pred CCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000992 413 SDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 413 ~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1196)
.|+++++|++.+..|+.+++.++ .-+..+.|..+--++.+|+-+ .++++|
T Consensus 354 DDktlrvwdl~~~~cmk~~~ah~------------hfvt~lDfh~~~p~VvTGsVd--qt~Kvw 403 (406)
T KOG0295|consen 354 DDKTLRVWDLKNLQCMKTLEAHE------------HFVTSLDFHKTAPYVVTGSVD--QTVKVW 403 (406)
T ss_pred cCCcEEEEEeccceeeeccCCCc------------ceeEEEecCCCCceEEecccc--ceeeee
Confidence 99999999999988887766442 246667777666677776654 444444
No 46
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.86 E-value=2.5e-17 Score=202.29 Aligned_cols=316 Identities=17% Similarity=0.158 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHh
Q 000992 808 ECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLW 887 (1196)
Q Consensus 808 ~~~KVn~iC~a~~~~l~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~ 887 (1196)
.++|-+.||++.|.-|+. .++..+.+.-++.+..+.. +-+|....+++|-.= .-.=+. ++..-.+.+. .|
T Consensus 656 ~~~ka~VvLQ~~RGNLEt--I~pR~lVLa~vr~~l~~~~--y~~AF~~~RkhRidl-nii~d~---~~~~Fl~nv~--af 725 (1265)
T KOG1920|consen 656 VPQKAAVVLQMPRGNLET--IYPRILVLAKVRTLLDRLR--YKEAFEVMRKHRIDL-NIIFDY---DPKRFLKNVP--AF 725 (1265)
T ss_pred ccchhhHhHhhcCCCcee--echhhhHHHHHHHHHHHHH--HHHHHHHHHHhccCc-cchhhc---CHHHHHhhHH--HH
Confidence 457899999999999998 7899999999999998888 999999988887320 000000 1111112211 22
Q ss_pred hcChH-----HHHHHHHhccChh-HHHHHHH----Hhc--CCc----chhhH-H-HHHHhcC-ChhhhcccHHHHhhC--
Q 000992 888 LADSE-----AVYEAALGLYDLN-LAAIVAL----NSQ--RDP----KEFLP-Y-LQELESM-PPLLMRYTIDLRLQR-- 946 (1196)
Q Consensus 888 L~d~~-----~Ly~~ALg~yD~~-lal~vAq----~sq--~Dp----keYlp-f-L~~L~~l-~~~~~r~~Id~~L~r-- 946 (1196)
|=+.| .||=.+|.-=|+- .+.-.-- +++ +|| .++++ - ++-|.+. |..+..+-|-.|++.
T Consensus 726 l~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~~~~~~ilTs~vk~~~ 805 (1265)
T KOG1920|consen 726 LKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALERRAPDKFNLFILTSYVKSNP 805 (1265)
T ss_pred hccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEeccchhhHHHHHHHHHHHHHhhcCcchhhHHHHHHHHhcCc
Confidence 22221 1343444322220 0000000 111 233 12211 1 1222222 334444556666654
Q ss_pred --HHHHHHHHHHcC----CCcHHHHHHHH----HHHhcChHHHHhhc-------------CCcHHHHHHHHHHHHHHhcc
Q 000992 947 --FENALKHIVSMG----DSYHADCLNLM----KKYAQLFPLGLKLI-------------TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 947 --y~~Al~~l~~~g----~~~~~~ale~~----~~~~~ly~~AL~L~-------------~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
-++||+.+.+.. ..-.++|++++ ... .+|+.||.+| +||+++.++++.+-. .
T Consensus 806 ~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn-~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~----m 880 (1265)
T KOG1920|consen 806 PEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVN-ELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKK----M 880 (1265)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHH-HHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhh----c
Confidence 577777776654 23358888887 556 7788888876 499999999976652 2
Q ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHhhc----------CCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 000992 1004 KCFEDAATTYFCCSSLEKAMKAYRASG--NWSGVLTVAGLL----------KLGKDEVAKLAQELCEELQALGKPGEAAK 1071 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~~~kAl~~y~~~g--~w~~al~la~~l----------~~~~~~~~~l~~~la~~L~~~~~~~eAa~ 1071 (1196)
--...-..+-...++|++|+....++| .|.+++.+.++. ..+++..+.++...|++|.+.++|.+||.
T Consensus 881 ~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 881 ETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred hhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 233444567777888888888888887 577777766654 34667778899999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC--CchhHH---HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1072 IALDYCGDVTNGISLLIDARDWEEALRVAFMHR--REDLIT---KVKHAS------LECASSLIGEYKEGLEKVGKYLT 1139 (1196)
Q Consensus 1072 i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~--~~dL~e---~v~~~l------~e~~~~~~e~l~~~~~~~~~~~~ 1139 (1196)
+|+. +|+.++|+.+|..+++|.+|+.+|.+.. +.++.. ++...| .||+....|.+.+.+++|.-+|+
T Consensus 961 ~Ye~-~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~k 1038 (1265)
T KOG1920|consen 961 MYER-CGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCK 1038 (1265)
T ss_pred HHHH-hccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhh
Confidence 9999 9999999999999999999999999644 344552 244444 67899999999999999988876
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1e-20 Score=208.36 Aligned_cols=293 Identities=14% Similarity=0.170 Sum_probs=203.9
Q ss_pred EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
..++..|.+.|+-+.|||+|++||++|.|.|..+|....|..-+. .++.. +|..+|..|.||||.+|+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl-~~tlv-----------gh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL-KKTLV-----------GHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee-eeeee-----------cccCceEEEEECCCCCeE
Confidence 346677899999999999999999999999999986544432111 12221 667788999999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEecc-CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1196)
.+++. +..+++||..+|.+....+. +...+.+.+|.|||..+.+|+.|. .+.-|+.+|...+.+.
T Consensus 285 laCg~-------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr------~i~~wdlDgn~~~~W~- 350 (519)
T KOG0293|consen 285 LACGF-------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR------TIIMWDLDGNILGNWE- 350 (519)
T ss_pred EecCc-------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC------cEEEecCCcchhhccc-
Confidence 95543 45699999999998877643 355679999999999999998864 5889999987765432
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEE
Q 000992 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
+.....|.+++.++||+.+.+...|. .|++++.....- ..+.- ...+ +++.-|.++.+ ++.+
T Consensus 351 -gvr~~~v~dlait~Dgk~vl~v~~d~---~i~l~~~e~~~d---r~lis-e~~~its~~iS~d~k~--~Lvn------- 413 (519)
T KOG0293|consen 351 -GVRDPKVHDLAITYDGKYVLLVTVDK---KIRLYNREARVD---RGLIS-EEQPITSFSISKDGKL--ALVN------- 413 (519)
T ss_pred -ccccceeEEEEEcCCCcEEEEEeccc---ceeeechhhhhh---hcccc-ccCceeEEEEcCCCcE--EEEE-------
Confidence 22234699999999999999999988 799998765211 00111 1112 44444444332 1211
Q ss_pred EEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000992 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~ 426 (1196)
...+.+.+|++..+.++..-..+. ...-|..-.|.--. ...+|+|+.|+.|+||+..++.
T Consensus 414 -----------------L~~qei~LWDl~e~~lv~kY~Ghk--q~~fiIrSCFgg~~-~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 414 -----------------LQDQEIHLWDLEENKLVRKYFGHK--QGHFIIRSCFGGGN-DKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred -----------------cccCeeEEeecchhhHHHHhhccc--ccceEEEeccCCCC-cceEEecCCCceEEEEEccCCc
Confidence 123456777776443322211111 12234444454333 1689999999999999998877
Q ss_pred ccccccCCceeeeeecccccCCcEEEEEEecCC-eEEEEEecCCCCceEEEEe
Q 000992 427 MLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 427 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~ 478 (1196)
.+.++.|| ...|..++|.|.+ .++|+++++ +++.+|..
T Consensus 474 ll~~LsGH------------s~~vNcVswNP~~p~m~ASasDD--gtIRIWg~ 512 (519)
T KOG0293|consen 474 LLAVLSGH------------SKTVNCVSWNPADPEMFASASDD--GTIRIWGP 512 (519)
T ss_pred eeEeecCC------------cceeeEEecCCCCHHHhhccCCC--CeEEEecC
Confidence 77777775 4579999999965 678988887 78889965
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.86 E-value=1.6e-21 Score=214.95 Aligned_cols=269 Identities=15% Similarity=0.162 Sum_probs=203.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..+.|-++|..|.++|+++-+-+|+...++-+. | +-.| .+.|.++.||++|..+++|..+|.|+.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt---i------lQaH----Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET---I------LQAH----DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHH---H------hhhh----cccceeEEEccCCCEEEEcCCCceEEe
Confidence 45667899999999999999999999983222221 1 2334 357999999999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+++-.-+. +-++|...|++++|||...-.+++|+||+|+||+- ..... |.+..+|.-.|.++.
T Consensus 165 WqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf----~~~ke-----------e~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF----RMPKE-----------ERVLRGHGWDVKSVD 229 (464)
T ss_pred cccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec----cCCch-----------hheeccCCCCcceec
Confidence 999876555 45566688999999999999999999999999852 11111 112235555679999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
|.|.-..+| +++ .|..|++||+.+|.++.++.+|...|..+.|+|+|++|+++|+|. .+++||.. .
T Consensus 230 WHP~kgLia-sgs------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~------~~kv~DiR-~ 295 (464)
T KOG0284|consen 230 WHPTKGLIA-SGS------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ------SCKVFDIR-T 295 (464)
T ss_pred cCCccceeE-Ecc------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc------eEEEEehh-H
Confidence 999999999 676 357999999999999999999999999999999999999999974 68899853 1
Q ss_pred eEEEEEeccCCCCcEEEEEEccC-CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec-CCcEEEEEccCCCceEEEE
Q 000992 261 ERSSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-RDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpD-g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~-~~~~~v~Wsp~~~~~L~~~ 338 (1196)
...-|+++++ ...|.+++|+|= -.+|++++.|+ .|..|.+.... -.-++...+ ..+++++|||-|-. |+.+
T Consensus 296 mkEl~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dg---svvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhi-l~tg 368 (464)
T KOG0284|consen 296 MKELFTYRGH-KKDVTSLTWHPLNESLFTSGGSDG---SVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHI-LATG 368 (464)
T ss_pred hHHHHHhhcc-hhhheeeccccccccceeeccCCC---ceEEEeccccc--cccCCCcccccceeeeecccccee-Eeec
Confidence 1112334433 457999999995 45889999999 89999887211 011222222 23489999998853 4444
Q ss_pred e
Q 000992 339 T 339 (1196)
Q Consensus 339 ~ 339 (1196)
+
T Consensus 369 s 369 (464)
T KOG0284|consen 369 S 369 (464)
T ss_pred C
Confidence 3
No 49
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=2.3e-19 Score=216.77 Aligned_cols=225 Identities=13% Similarity=0.159 Sum_probs=163.9
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCC--------eEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEe
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGN--------ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT 144 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~--------~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~ 144 (1196)
.+.|.+++|+| +++.|++|+.||+|++||..++ .+..+..|...|.+++|+|++ .+||+++.|++|++|+
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 46899999999 8999999999999999998653 123344578899999999986 6999999999999987
Q ss_pred cc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 145 HD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 145 ~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
.. ...+.. +.+|.+.|.+++|+|||.+|| +++ .|++|||||..+|+...+..+|.+
T Consensus 155 l~tg~~~~~----------------l~~h~~~V~sla~spdG~lLa-tgs------~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 155 VERGKAVEV----------------IKCHSDQITSLEWNLDGSLLC-TTS------KDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred CCCCeEEEE----------------EcCCCCceEEEEEECCCCEEE-Eec------CCCEEEEEECCCCcEEEEEecCCC
Confidence 32 222111 225667889999999999999 565 479999999989999888888776
Q ss_pred c-eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe-ccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEE
Q 000992 224 M-GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI-NEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVK 300 (1196)
Q Consensus 224 ~-v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l-~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~ 300 (1196)
. ...+.|.|++.+|++++.... ....|++|+...... .+.. ..+....+....|+||+.+|++++. |+ +|+
T Consensus 212 ~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg---~Ir 285 (493)
T PTZ00421 212 AKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG---NIR 285 (493)
T ss_pred CcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC---eEE
Confidence 4 357889999998887764321 246799999542211 1111 1122235667789999999999884 77 899
Q ss_pred EEEecCCEEEEEEEEEEecCCc-EEEEEccC
Q 000992 301 ICFFSNNHWYLKYEIRYLRRDG-IRFMWHPT 330 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~ 330 (1196)
+|++.+.+.+.. ..+..... ..+.|.|.
T Consensus 286 iwdl~~~~~~~~--~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 286 CFELMNERLTFC--SSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeeCCceEEE--eeccCCCCCcceEeccc
Confidence 999998765332 23322222 44555553
No 50
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=2.9e-18 Score=199.65 Aligned_cols=450 Identities=14% Similarity=0.131 Sum_probs=269.5
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC---EEEEEECCCcEEEE
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE---ALIVGTSSGLLLLH 102 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~---~La~as~dG~I~lw 102 (1196)
.+| .-++.|.++++-. |..||. ..- ..+.+ +.+| ...|++++|.|+++ .+++|+.||.|++|
T Consensus 20 ~sw-~~~~~vafGa~~~-Iav~dp--~k~---~i~t~----l~GH----~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW 84 (764)
T KOG1063|consen 20 SSW-GPGGLVAFGAGPA-IAVADP--EKI---LIVTT----LDGH----VARVNCVHWLPTSEIVAEMVSGDSDGRVILW 84 (764)
T ss_pred ccc-cccceEEecCCce-EEEeCc--ccc---eeEEe----ccCC----ccceEEEEEcccccccceEEEccCCCcEEEE
Confidence 344 3345555555544 888887 222 11222 5555 46899999999998 89999999999999
Q ss_pred ECCC-CeEEEeeeecC-cEEEEEECCCCCEEEEEeCCceEEEEeccCcee---eee----------eccccc-Cccccc-
Q 000992 103 SVDG-NATEVVGRVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL---YEN----------PLEELA-EGFDVH- 165 (1196)
Q Consensus 103 ~~~~-~~~e~vg~~~~-~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~---~~~----------~l~~~~-~~~~Vs- 165 (1196)
.+.. ..+.+.+ +++ .+.+++++.--........|+++.+|++.-+.+ ... ++.... +..++.
T Consensus 85 ~l~~~~~~~i~~-~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla 163 (764)
T KOG1063|consen 85 KLRDEYLIKIYT-IQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLA 163 (764)
T ss_pred EEeehheEEEEe-ecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEE
Confidence 9874 3222222 222 456666665544444447899999998733320 000 010000 111110
Q ss_pred --------------cCccc------cCCCCeEEEEEccCCc---eEEEeeccccccCCCCEEEEEECCCCc---------
Q 000992 166 --------------EPELS------SSFSFKSPISWRGDGK---YFATLSEFCNSSKLHKRLKVWERDSGT--------- 213 (1196)
Q Consensus 166 --------------~tqf~------~~~~~v~~isWspDG~---~lAsvss~d~~~~~d~~irVWd~~~G~--------- 213 (1196)
..+|+ ||.|.|.+|+|+--|. ++| ++| .|+.||||...-+.
T Consensus 164 ~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la-S~S------QD~yIRiW~i~~~~~~~~~~~e~ 236 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA-SSS------QDRYIRIWRIVLGDDEDSNERED 236 (764)
T ss_pred ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE-ecC------CceEEEEEEEEecCCcccccccc
Confidence 22444 8999999999986554 666 455 68999999753221
Q ss_pred ----------------EE------EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC---CeeEEEEEec
Q 000992 214 ----------------LQ------ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDIN 268 (1196)
Q Consensus 214 ----------------l~------~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n---Gl~~~~f~l~ 268 (1196)
.. ..+.+|+.+|.++-|+|.|..|.|+|.|+ ++.+|++. |.-.....+-
T Consensus 237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk------smiiW~pd~~tGiWv~~vRlG 310 (764)
T KOG1063|consen 237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK------SMIIWKPDENTGIWVDVVRLG 310 (764)
T ss_pred ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc------ceEEEecCCccceEEEEEEee
Confidence 11 11238999999999999998888888875 48889863 2221111121
Q ss_pred --cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 269 --EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 269 --~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
++....-+..-|||+|..+.+.+..+ ..++|-.. +..|..-..+..|-++...+.|+|+|...|.+.+ |.+-.
T Consensus 311 e~gg~a~GF~g~lw~~n~~~ii~~g~~G---g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-DQTTR 386 (764)
T KOG1063|consen 311 EVGGSAGGFWGGLWSPNSNVIIAHGRTG---GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-DQTTR 386 (764)
T ss_pred cccccccceeeEEEcCCCCEEEEecccC---cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc-cccee
Confidence 11134578899999999888888887 79999944 5667554445555455689999999986444433 22211
Q ss_pred -EEEE----EEe-ee---------------cCCCeeEEE-----------------------------------------
Q 000992 346 -TYNF----IWT-TA---------------VMENSTALV----------------------------------------- 363 (1196)
Q Consensus 346 -~~~~----~~~-~~---------------~~d~~~v~v----------------------------------------- 363 (1196)
...| .|. ++ ..+...+..
T Consensus 387 lFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vpa 466 (764)
T KOG1063|consen 387 LFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPA 466 (764)
T ss_pred eecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccc
Confidence 0111 000 00 001111111
Q ss_pred -------------EcCCEE---EEeecccc---CCCCCcee------------eeecCCCCEEEEEEecCCCCCEEEEEE
Q 000992 364 -------------IDGSKI---LVTPLSLS---LMPPPMYL------------FSLKFPTAVTEMAFYSKSSKNCLAAIL 412 (1196)
Q Consensus 364 -------------iDg~~l---~lt~l~~~---~vpppm~~------------~~l~~~~~V~~Vafspdg~~~~lAs~~ 412 (1196)
.+|..- .=+|+... ...||+-- +-.+|.-.|.+++.||+| +.+|++.
T Consensus 467 LGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g--nliASaC 544 (764)
T KOG1063|consen 467 LGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG--NLIASAC 544 (764)
T ss_pred ccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC--CEEeehh
Confidence 112110 11122111 11255431 112355669999999999 8999886
Q ss_pred CC-----CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCcccc
Q 000992 413 SD-----GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLG 487 (1196)
Q Consensus 413 ~d-----g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1196)
.. .-|+||+..+-...+++.|| .-.|.+++|||||++|++.+.+ .++.+|+...+. .
T Consensus 545 KS~~~ehAvI~lw~t~~W~~~~~L~~H------------sLTVT~l~FSpdg~~LLsvsRD--Rt~sl~~~~~~~-~--- 606 (764)
T KOG1063|consen 545 KSSLKEHAVIRLWNTANWLQVQELEGH------------SLTVTRLAFSPDGRYLLSVSRD--RTVSLYEVQEDI-K--- 606 (764)
T ss_pred hhCCccceEEEEEeccchhhhheeccc------------ceEEEEEEECCCCcEEEEeecC--ceEEeeeeeccc-c---
Confidence 43 46899998875444445554 3479999999999999988876 577888763211 0
Q ss_pred chhhhhhhhcccccccccccccccceeeeeeeccCCcEE-EEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 488 FYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVI-AIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
.| ..+.. .....+|+ ...++| ++..++-.++|.+|..|...
T Consensus 607 ---~e--------------------~~fa~-~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 607 ---DE--------------------FRFAC-LKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ---hh--------------------hhhcc-ccccceEEEEcccCc-ccceeEEecCCceEEEEecc
Confidence 00 00111 11133444 334677 77778889999999999654
No 51
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=189.55 Aligned_cols=243 Identities=11% Similarity=0.061 Sum_probs=188.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
++..+.+.+|...|..++--+ |..+|++ +++.. .+.+ +.++ ...|.+|.|..||+.+.+|++||+++|
T Consensus 42 qVNrLeiTpdk~~LAaa~~qh-vRlyD~~-S~np~--Pv~t----~e~h----~kNVtaVgF~~dgrWMyTgseDgt~kI 109 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQH-VRLYDLN-SNNPN--PVAT----FEGH----TKNVTAVGFQCDGRWMYTGSEDGTVKI 109 (311)
T ss_pred ceeeEEEcCCcchhhhccCCe-eEEEEcc-CCCCC--ceeE----Eecc----CCceEEEEEeecCeEEEecCCCceEEE
Confidence 889999999999888777665 9999995 33321 1222 3333 468999999999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
||...-.+. ... |..+|+++...|++.-|.++..+|.|.+|+..-+.-+.. +-+++ +..+.+++
T Consensus 110 WdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-liPe~-------------~~~i~sl~ 174 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-LIPED-------------DTSIQSLT 174 (311)
T ss_pred EeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-cCCCC-------------CcceeeEE
Confidence 999885554 344 468999999999999999999999998876432222222 22221 24568999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE------eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS------SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~------~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
--|||.+++. +. ..+...||+.-+++..+- +..|.+.+..+-+|||+++||++|.|+ +|++
T Consensus 175 v~~dgsml~a-~n------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk------tv~i 241 (311)
T KOG0315|consen 175 VMPDGSMLAA-AN------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK------TVKI 241 (311)
T ss_pred EcCCCcEEEE-ec------CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc------eEEE
Confidence 9999999983 32 457899999855443333 345788889999999999999999975 6999
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+..+-...+..+.. ++.+|++.+||.||++|.+++.|. +++||++.+.+
T Consensus 242 wn~~~~~kle~~l~g-h~rWvWdc~FS~dg~YlvTassd~---~~rlW~~~~~k 291 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTG-HQRWVWDCAFSADGEYLVTASSDH---TARLWDLSAGK 291 (311)
T ss_pred EecCCceeeEEEeec-CCceEEeeeeccCccEEEecCCCC---ceeecccccCc
Confidence 998876555555554 357999999999999999999998 99999998753
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.85 E-value=1.6e-19 Score=197.81 Aligned_cols=286 Identities=12% Similarity=0.169 Sum_probs=211.0
Q ss_pred CCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEE-CCC--CCEEEEEeCCceEEEEeccC
Q 000992 72 LEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISP-SPD--GDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 72 ~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~aw-SPD--g~~LA~~s~d~tV~l~~~~~ 147 (1196)
++..+.|.+|.-. ++.+.+++-||++++|+..|..+. ++| |.+.|.+++| .+| ..++++++.|+++.+|. |
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~--~ 176 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK--W 176 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEec-CCcceeeeEEEecCCccceEEEecCCceEEEEE--e
Confidence 3445788888777 789999999999999999997665 555 6899998888 333 33699999999999985 3
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-----------------
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD----------------- 210 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~----------------- 210 (1196)
++-.. .... ..+-+||...|-+|+=.+||..|+ ++++ |.+|+||+.+
T Consensus 177 ~~~~~-~~~~--------~~~~~GHk~~V~sVsv~~sgtr~~-SgS~------D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 177 NVGEN-KVKA--------LKVCRGHKRSVDSVSVDSSGTRFC-SGSW------DTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred cCchh-hhhH--------HhHhcccccceeEEEecCCCCeEE-eecc------cceeeecccCCCccccccccchhhhhh
Confidence 32110 0000 011237888999999999999999 6774 6899999910
Q ss_pred --------CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 211 --------SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 211 --------~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
++....++++|...|.++-|++ ...+.|++.| ++|+.|+.. .+............++++.+|
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwD------HTIk~WDle---tg~~~~~~~~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWD------HTIKVWDLE---TGGLKSTLTTNKSLNCISYSP 310 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcC-CCceEeeccc------ceEEEEEee---cccceeeeecCcceeEeeccc
Confidence 1234556788999999999999 4567788875 789999853 111111111234688999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCE-EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeE
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNH-WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA 361 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~-wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v 361 (1196)
.+.+||+|+.|+ .++|||-.+.. -..+|.+..|.+-+..+.|+|.....|..++.|
T Consensus 311 ~~~Ll~~gssdr---~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D-------------------- 367 (423)
T KOG0313|consen 311 LSKLLASGSSDR---HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD-------------------- 367 (423)
T ss_pred ccceeeecCCCC---ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC--------------------
Confidence 999999999999 89999976542 234567777666568899999998766555433
Q ss_pred EEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 362 LVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 362 ~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+++++|+.|..- .|| +.+ .|.+.|.+|.|+..+ .+++|+.|++|+++.-.
T Consensus 368 -----~t~klWDvRS~k--~pl--ydI~~h~DKvl~vdW~~~~---~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 -----NTVKLWDVRSTK--APL--YDIAGHNDKVLSVDWNEGG---LIVSGGADNKLRIFKGS 418 (423)
T ss_pred -----CeEEEEEeccCC--Ccc--eeeccCCceEEEEeccCCc---eEEeccCcceEEEeccc
Confidence 356777776421 255 455 589999999999875 89999999999999764
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.84 E-value=7.5e-19 Score=187.83 Aligned_cols=279 Identities=13% Similarity=0.162 Sum_probs=202.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
.+.|..+.|+|||..||+|+.|..|.||+..+.. ....| |.+.|..+.|++||..|.+++.|++|..| |..+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~v~~w----D~~t 121 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKTVRGW----DAET 121 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCceEEEE----eccc
Confidence 4789999999999999999999999999987621 22334 69999999999999999999999999765 5545
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
+..... |++|.+-+..+.=+-=|..++ ++. ..|+++||||....+...+.+ ....+.+++|+
T Consensus 122 G~~~rk-----------~k~h~~~vNs~~p~rrg~~lv-~Sg-----sdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~ 183 (338)
T KOG0265|consen 122 GKRIRK-----------HKGHTSFVNSLDPSRRGPQLV-CSG-----SDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFK 183 (338)
T ss_pred ceeeeh-----------hccccceeeecCccccCCeEE-Eec-----CCCceEEEEeecccchhhccc-cceeEEEEEec
Confidence 544432 335556667777555677777 343 257999999997777777765 34557999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
-++..+-+|+-| +.|++|+. ++ ++.+++.++ .+.|..|+-||+|..|.+-+-|. +|++|++.-++--
T Consensus 184 d~s~qv~sggId------n~ikvWd~r~~--d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~---tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 184 DTSDQVISGGID------NDIKVWDLRKN--DGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDN---TVRVWDVRPFAPS 251 (338)
T ss_pred ccccceeecccc------CceeeeccccC--cceEEeecc-cCceeeEEeccCCCccccccccc---eEEEEEecccCCC
Confidence 999999999986 46999995 22 223356654 56899999999999999999998 9999999876542
Q ss_pred EE--EEEEEecC--Cc--EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 311 LK--YEIRYLRR--DG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 311 lk--q~l~~~~~--~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
-. +....+.. +. ...+|+|++.. +..++.| ...++|++..- ..+
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~d----r~vyvwd~~~r----------~~l--------------- 301 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSAD----RFVYVWDTTSR----------RIL--------------- 301 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCc-ccccccc----ceEEEeecccc----------cEE---------------
Confidence 11 12222211 11 56789998865 3333322 33445554310 011
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+.+ +|.+.|++++|+|.. .+|.++++|.+|.|=+
T Consensus 302 -yklpGh~gsvn~~~Fhp~e--~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 302 -YKLPGHYGSVNEVDFHPTE--PIILSCSSDKTIYLGE 336 (338)
T ss_pred -EEcCCcceeEEEeeecCCC--cEEEEeccCceeEeec
Confidence 222 377889999999998 8999999999998743
No 54
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=2e-18 Score=208.61 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=160.1
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCC----------CeE----EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEE
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDG----------NAT----EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILV 142 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~----------~~~----e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l 142 (1196)
|.....++|+..++.++.+.....|+..+ |+. ..+.+|.+.|.+++||| |+++||+++.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 44444566655555555555555555433 221 12344689999999999 9999999999999999
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~ 221 (1196)
|+..-....... ..++ ..+.+|...|.+++|+|++ .+|| +++ .|++|+|||..+|+...++..|
T Consensus 103 Wdi~~~~~~~~~------~~~l--~~L~gH~~~V~~l~f~P~~~~iLa-Sgs------~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 103 WGIPEEGLTQNI------SDPI--VHLQGHTKKVGIVSFHPSAMNVLA-SAG------ADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred EecCCCcccccc------Ccce--EEecCCCCcEEEEEeCcCCCCEEE-EEe------CCCEEEEEECCCCeEEEEEcCC
Confidence 874311110000 0001 1244778889999999986 5888 565 4699999999899998888889
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CcceE
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSV 299 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V 299 (1196)
...+.+++|+|+|++||+++.|+ .|++|+. +|..... +..+....+..+.|+|++..|++++.++ ...+|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~~v~t--l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGTIVSS--VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCC------EEEEEECCCCcEEEE--EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 99999999999999999999864 6999994 4544332 3333333456789999988887765321 11289
Q ss_pred EEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEe-cCCcEEE
Q 000992 300 KICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWT-LDGQITT 346 (1196)
Q Consensus 300 ~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~-~~g~~~~ 346 (1196)
+|||+.+...-+ .....+.... ....|+|++.. |.++. .+|.+..
T Consensus 240 klWDlr~~~~p~-~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iri 286 (493)
T PTZ00421 240 MLWDTRKMASPY-STVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRC 286 (493)
T ss_pred EEEeCCCCCCce-eEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEE
Confidence 999998653211 1111222222 45578888764 44443 3555543
No 55
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.83 E-value=2.2e-18 Score=179.75 Aligned_cols=278 Identities=13% Similarity=0.107 Sum_probs=197.0
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCc--eeeeeecccccCccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWD--LLYENPLEELAEGFD 163 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d--~~~~~~l~~~~~~~~ 163 (1196)
-.||+|+-|-||++|...+|.+. .+.+-++-|+++...||++.||.|+. ..|++++. ..+ |+..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t----------- 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVAT----------- 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeE-----------
Confidence 47899999999999999999885 77777888999999999999998875 47877642 111 2222
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecC
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
|-+|...|..+.|--||++.. .|+ +|+++||||...-.++..++ +...|.++...|+..-|.++...
T Consensus 79 -----~e~h~kNVtaVgF~~dgrWMy-Tgs------eDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 79 -----FEGHTKNVTAVGFQCDGRWMY-TGS------EDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred -----EeccCCceEEEEEeecCeEEE-ecC------CCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCC
Confidence 335667789999999999999 575 58999999997766666666 55889999999987777666553
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE-----EEEEe
Q 000992 244 KSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY-----EIRYL 318 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq-----~l~~~ 318 (1196)
..|++|+.-.......-+|.. ...|.+++--|||+.||.+...+ ...+|++-+.. ...+ .+..+
T Consensus 146 ------g~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG---~cyvW~l~~~~-~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 146 ------GNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAAANNKG---NCYVWRLLNHQ-TASELEPVHKFQAH 214 (311)
T ss_pred ------CcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEEecCCc---cEEEEEccCCC-ccccceEhhheecc
Confidence 469999954322221123332 35799999999999999999888 89999987621 1111 11122
Q ss_pred cCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEE
Q 000992 319 RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEM 397 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~V 397 (1196)
........+||++.+ |+..+.+.+ +++|....- -|-..++ .|..+||+.
T Consensus 215 ~~~il~C~lSPd~k~-lat~ssdkt-------------------------v~iwn~~~~----~kle~~l~gh~rWvWdc 264 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKY-LATCSSDKT-------------------------VKIWNTDDF----FKLELVLTGHQRWVWDC 264 (311)
T ss_pred cceEEEEEECCCCcE-EEeecCCce-------------------------EEEEecCCc----eeeEEEeecCCceEEee
Confidence 222366778888765 444444433 333322211 0111223 377899999
Q ss_pred EEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC
Q 000992 398 AFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 398 afspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g 433 (1196)
+||.|| ++|+++++|+++++|++.........+|
T Consensus 265 ~FS~dg--~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 265 AFSADG--EYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred eeccCc--cEEEecCCCCceeecccccCceeeecCC
Confidence 999999 8999999999999999987544433344
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.4e-19 Score=206.25 Aligned_cols=269 Identities=17% Similarity=0.188 Sum_probs=193.3
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
.|. -.+.|.++.+.. +|+|+. .++... . +..+. .+.|+++.|+++|..||+|..+|.|.|||...
T Consensus 184 dWs-s~n~laValg~~-vylW~~--~s~~v~-~-------l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 184 DWS-SANVLAVALGQS-VYLWSA--SSGSVT-E-------LCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred hcc-cCCeEEEEecce-EEEEec--CCCceE-E-------eEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehhh
Confidence 454 356677766655 999999 666542 1 22221 46899999999999999999999999999876
Q ss_pred C-eEEE-eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 107 N-ATEV-VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 107 ~-~~e~-vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
. .++. .++|...|-+++|+ +..|.+|+.|+.|..++.. ...... . ..++|...|+.+.|++|
T Consensus 249 ~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR----~~~~~~---------~-~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 249 QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR----ISQHVV---------S-TLQGHRQEVCGLKWSPD 312 (484)
T ss_pred ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe----cchhhh---------h-hhhcccceeeeeEECCC
Confidence 3 4554 44488999999999 7799999999999775421 111110 0 13367778899999999
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC-CeeE
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN-GLER 262 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~ 262 (1196)
|.+|| +++ .|+.+.|||...-+.......|.+.|.+++|+| +..+||+|+.-. +..|+||+.+ |.+.
T Consensus 313 ~~~lA-SGg------nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~----D~~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 313 GNQLA-SGG------NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA----DRCIKFWNTNTGARI 381 (484)
T ss_pred CCeec-cCC------CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCc----ccEEEEEEcCCCcEe
Confidence 99999 565 579999999966666777778999999999999 567999987644 5789999976 3222
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCC
Q 000992 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.. ......|.+|.||+..+-|+++....+ +.|.||....+. +..++..|..-+..++|+|++.. +.++..|.
T Consensus 382 ~~----vdtgsQVcsL~Wsk~~kEi~sthG~s~-n~i~lw~~ps~~--~~~~l~gH~~RVl~la~SPdg~~-i~t~a~DE 453 (484)
T KOG0305|consen 382 DS----VDTGSQVCSLIWSKKYKELLSTHGYSE-NQITLWKYPSMK--LVAELLGHTSRVLYLALSPDGET-IVTGAADE 453 (484)
T ss_pred cc----cccCCceeeEEEcCCCCEEEEecCCCC-CcEEEEeccccc--eeeeecCCcceeEEEEECCCCCE-EEEecccC
Confidence 21 112357999999999976666554432 269999987743 22334444333488999999754 66666565
Q ss_pred cEE
Q 000992 343 QIT 345 (1196)
Q Consensus 343 ~~~ 345 (1196)
++.
T Consensus 454 Tlr 456 (484)
T KOG0305|consen 454 TLR 456 (484)
T ss_pred cEE
Confidence 554
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1.1e-18 Score=183.19 Aligned_cols=266 Identities=16% Similarity=0.195 Sum_probs=195.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC-CCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd-~~~La~as~dG~I~ 100 (1196)
.+..++|..+|..+.+++-|+....|++ ........ ...++| ++.|..+.|.|. ...+++++.|.+|+
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~--e~~r~~~~-----~~~~gh----~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNL--ERDRFRKE-----LVYRGH----TDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEe--cchhhhhh-----hcccCC----CcchhhheeCCCCCcceEEecCCceEE
Confidence 6888999999999999999998999988 33321100 013334 457888899875 47899999999999
Q ss_pred EEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+||...+++- .+. ..++-.-+.|||||+++|.++.|..|...+ +...+..+.+... .+..
T Consensus 91 ~wd~r~~k~~~~i~-~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-----------------e~ne 152 (313)
T KOG1407|consen 91 IWDIRSGKCTARIE-TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-----------------EVNE 152 (313)
T ss_pred EEEeccCcEEEEee-ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-----------------eeee
Confidence 9999876653 222 245667789999999999999998876653 4444444333222 3478
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
++|+-++.+|. ... +.++|.|-.--+-+.+.+...|+..--+|.|+|+|+++|+|+.|. -|.+|+.+
T Consensus 153 ~~w~~~nd~Ff-lt~------GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA------lvSLWD~~ 219 (313)
T KOG1407|consen 153 ISWNNSNDLFF-LTN------GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA------LVSLWDVD 219 (313)
T ss_pred eeecCCCCEEE-Eec------CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc------eeeccChh
Confidence 99998888776 332 468999988767777788888888788999999999999999975 58899977
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLIC 337 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~ 337 (1196)
.+.=-. .+ ...+-.|..|+||-||++||++++|. .|-|=.+.++.- ..++.. ++. ..|+|||..++ |+.
T Consensus 220 ELiC~R-~i-sRldwpVRTlSFS~dg~~lASaSEDh---~IDIA~vetGd~--~~eI~~--~~~t~tVAWHPk~~L-LAy 289 (313)
T KOG1407|consen 220 ELICER-CI-SRLDWPVRTLSFSHDGRMLASASEDH---FIDIAEVETGDR--VWEIPC--EGPTFTVAWHPKRPL-LAY 289 (313)
T ss_pred Hhhhhe-ee-ccccCceEEEEeccCcceeeccCccc---eEEeEecccCCe--EEEeec--cCCceeEEecCCCce-eeE
Confidence 543100 11 12356799999999999999999998 788887776541 123332 444 88999998876 555
Q ss_pred Ee
Q 000992 338 WT 339 (1196)
Q Consensus 338 ~~ 339 (1196)
..
T Consensus 290 A~ 291 (313)
T KOG1407|consen 290 AC 291 (313)
T ss_pred Ee
Confidence 44
No 58
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=4.4e-18 Score=206.66 Aligned_cols=226 Identities=9% Similarity=0.014 Sum_probs=157.7
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCe---------EEEeeeecCcEEEEEECCCCCE-EEEEeCCceEEEE
Q 000992 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNA---------TEVVGRVEGGVRFISPSPDGDL-LGVTTGFGQILVM 143 (1196)
Q Consensus 75 ~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~~~---------~e~vg~~~~~I~~~awSPDg~~-LA~~s~d~tV~l~ 143 (1196)
.+.|.+++|+|+ ++.||+|+.||+|++|+..++. +..+..|.+.|.+++|+|++.. ||+++.|++|++|
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 468999999997 7999999999999999986421 1234557889999999999986 5789999999998
Q ss_pred ec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 TH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+. ....+.... +...+.+++|+|||.+|| +++ .|++|||||..+|+...++.+|.
T Consensus 154 Dl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLa-t~s------~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 154 DIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLS-GTC------VGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred ECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEE-EEe------cCCEEEEEECCCCcEEEEEeccc
Confidence 73 222221111 224679999999999999 565 36899999998999999888888
Q ss_pred Ccee-----EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC
Q 000992 223 FMGA-----VLEWMPSGANIAAVYDRKSENKCPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE 295 (1196)
Q Consensus 223 ~~v~-----slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~ 295 (1196)
+.+. ...|+|++++|++++.+.. ....|++|+... .....+.+.. ..+.+.....+++|.++++|..|+
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~- 285 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDG- 285 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCC-
Confidence 7543 3356799999999887631 124699999542 2122222221 112233333456699999999999
Q ss_pred cceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCC
Q 000992 296 YDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKP 332 (1196)
Q Consensus 296 ~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~ 332 (1196)
+|++|++....-+.-.+ +....+ ..+.|.|...
T Consensus 286 --tIr~~e~~~~~~~~l~~--~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 286 --NCRYYQHSLGSIRKVNE--YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred --eEEEEEccCCcEEeecc--cccCCCccceEEccccc
Confidence 99999987542111111 222222 5677888654
No 59
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-18 Score=186.12 Aligned_cols=293 Identities=14% Similarity=0.117 Sum_probs=196.2
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe------EE-EeeeecCcEEEEEECCCCCEEEEEeCC-c
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA------TE-VVGRVEGGVRFISPSPDGDLLGVTTGF-G 138 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~------~e-~vg~~~~~I~~~awSPDg~~LA~~s~d-~ 138 (1196)
|++| ++.|++++||.||+.||+++.||+|++|+.+.-+ +. .+.. +.-+.++|+||-+-+++.-.. .
T Consensus 82 LKgH----~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 82 LKGH----KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhcc----CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEccCC
Confidence 5555 5789999999999999999999999999987511 11 2221 235789999998877665433 3
Q ss_pred eEEEEe--ccCceeeeeecccccCccccccCccc-cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE
Q 000992 139 QILVMT--HDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ 215 (1196)
Q Consensus 139 tV~l~~--~~~d~~~~~~l~~~~~~~~Vs~tqf~-~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~ 215 (1196)
++.++. +.-|- ..++ +.-++....|+ -|.-.+..|.--+.++|++ +++ .|.+|.+|+. .|+++
T Consensus 156 ~l~vyk~~K~~dG--~~~~----~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im-sas------~dt~i~lw~l-kGq~L 221 (420)
T KOG2096|consen 156 KLCVYKLVKKTDG--SGSH----HFVHIDNLEFERKHQVDIINIGIAGNAKYIM-SAS------LDTKICLWDL-KGQLL 221 (420)
T ss_pred EEEEEEeeecccC--CCCc----ccccccccccchhcccceEEEeecCCceEEE-Eec------CCCcEEEEec-CCcee
Confidence 455432 11110 0000 11111112222 3445677888899999999 455 3689999999 79998
Q ss_pred EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC----CCeeE---EEEEeccCCCCcEEEEEEccCCCeeE
Q 000992 216 ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER----NGLER---SSFDINEQIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 216 ~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~----nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1196)
.+...........+-||+|++||+++.- .+|++||. .|.-. ..|.|.+| ...|.+++|||+++..+
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFT------pDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFT------PDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCC------CCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeE
Confidence 8766544445778999999999999984 57999984 44321 22455554 56799999999999999
Q ss_pred EEEccCCcceEEEEEecC-CEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCC
Q 000992 289 AVVRFEEYDSVKICFFSN-NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGS 367 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n-~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~ 367 (1196)
+++.|+ +++|||++- || . -+.|+.|..+.
T Consensus 295 tvSkDG---~wriwdtdVrY~----------~---------~qDpk~Lk~g~---------------------------- 324 (420)
T KOG2096|consen 295 TVSKDG---KWRIWDTDVRYE----------A---------GQDPKILKEGS---------------------------- 324 (420)
T ss_pred EEecCC---cEEEeeccceEe----------c---------CCCchHhhcCC----------------------------
Confidence 999999 999999873 22 1 11233222211
Q ss_pred EEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccC
Q 000992 368 KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAF 447 (1196)
Q Consensus 368 ~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (1196)
.|.+. ..+...-++.||+| +.||+. ...+|+++...++....++. ..+.
T Consensus 325 -------------~pl~a----ag~~p~RL~lsP~g--~~lA~s-~gs~l~~~~se~g~~~~~~e-----------~~h~ 373 (420)
T KOG2096|consen 325 -------------APLHA----AGSEPVRLELSPSG--DSLAVS-FGSDLKVFASEDGKDYPELE-----------DIHS 373 (420)
T ss_pred -------------cchhh----cCCCceEEEeCCCC--cEEEee-cCCceEEEEcccCccchhHH-----------Hhhc
Confidence 11111 11122367788999 788766 55689999887644332222 2345
Q ss_pred CcEEEEEEecCCeEEEEEec
Q 000992 448 GSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 448 ~~v~~l~~~~d~~lla~~~~ 467 (1196)
..+.+++|+++|+++|++++
T Consensus 374 ~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CceeeEEecCCCcEEeeecc
Confidence 68999999999999999876
No 60
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.4e-18 Score=173.87 Aligned_cols=290 Identities=14% Similarity=0.091 Sum_probs=205.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECC------C-----C-----eEEEeeeecCcEEEEEECCCCCEEEEEeCCc
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVD------G-----N-----ATEVVGRVEGGVRFISPSPDGDLLGVTTGFG 138 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~------~-----~-----~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~ 138 (1196)
...|.+|+|+|.|..-|+|+...+.++.... . . .+..-.+|.+.|.|.+|||+|++||+++.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 3579999999999999999999999995421 1 0 1234457889999999999999999999999
Q ss_pred eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc----CCceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG----DGKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 139 tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp----DG~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
+|+++- |+.-+...... +..|.-|++.|..++|-- -|..|| +++ .+|+.|.+-|-.+|+-
T Consensus 112 ~ik~l~--fn~dt~~~~g~--------dle~nmhdgtirdl~fld~~~s~~~il~-s~g-----agdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 112 TIKVLP--FNADTCNATGH--------DLEFNMHDGTIRDLAFLDDPESGGAILA-SAG-----AGDCKIYITDCGRGQG 175 (350)
T ss_pred eEEEEe--cccccccccCc--------ceeeeecCCceeeeEEecCCCcCceEEE-ecC-----CCcceEEEeecCCCCc
Confidence 999974 22111111111 234557888899999954 356788 555 3688999988888998
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec----c--CCCCcEEEEEEccCCCeeE
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN----E--QIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~----~--~~~~~V~~laWSpDg~~LA 288 (1196)
.....+|.|.+-++ ++=+|-++|||+.|+ +|+||+..-.. -.-++. . -....|.+++-.|.|++||
T Consensus 176 ~~a~sghtghilal-yswn~~m~~sgsqdk------tirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 176 FHALSGHTGHILAL-YSWNGAMFASGSQDK------TIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ceeecCCcccEEEE-EEecCcEEEccCCCc------eEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 88888999988665 344688999999874 69999842100 000111 1 1124699999999999999
Q ss_pred EEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE
Q 000992 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1196)
++-.|. ...|+|+.... ..|.+.-+..+..++.|+|..-+ +...+- +..
T Consensus 248 sg~~ds---sc~lydirg~r--~iq~f~phsadir~vrfsp~a~y-llt~sy-------------------------d~~ 296 (350)
T KOG0641|consen 248 SGHADS---SCMLYDIRGGR--MIQRFHPHSADIRCVRFSPGAHY-LLTCSY-------------------------DMK 296 (350)
T ss_pred eccCCC---ceEEEEeeCCc--eeeeeCCCccceeEEEeCCCceE-EEEecc-------------------------cce
Confidence 999998 89999988664 23433333334488999996543 222211 125
Q ss_pred EEEeeccccCC--CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 369 ILVTPLSLSLM--PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 369 l~lt~l~~~~v--pppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
|++|++.+... -|.| ..-+|.+.+..+.|+|.. -.+.+.+.|.++.||.++
T Consensus 297 ikltdlqgdla~el~~~--vv~ehkdk~i~~rwh~~d--~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIM--VVAEHKDKAIQCRWHPQD--FSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeecccchhhcCceE--EEEeccCceEEEEecCcc--ceeeeccCcceEEEeccC
Confidence 67777664321 2223 223688999999999998 678899999999999764
No 61
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=2.5e-19 Score=201.95 Aligned_cols=300 Identities=15% Similarity=0.140 Sum_probs=199.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-----EE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-----TE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-----~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
..|.++++-|.|-.+++|+-|-+|++||.++.- .. +...-...|++++|||.|.+|..+++..+.+|.+|++-.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 458899999999999999999999999998621 11 111112369999999999999999999999999998877
Q ss_pred eeeeecccccCccccc-cCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCc-EEEEecc-----C
Q 000992 150 LYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGT-LQASSEL-----K 221 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs-~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~-----~ 221 (1196)
+.+..-.. +.|. -..-+||...+.+-+|.|+.+ .|.| ++ .|+++||||.+.-+ ....+.+ .
T Consensus 248 ~~e~~KGD----QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT-~s------~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 248 IVEFSKGD----QYIRDMYNTKGHIAELTCGCWHPDNKEEFLT-CS------YDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeeeeccc----hhhhhhhccCCceeeeeccccccCcccceEE-ec------CCCcEEEEecCCchhheeEEeeccCCCc
Confidence 66654221 2221 111236778889999999986 3443 33 47999999985322 2223322 2
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCC--CcEEEEEEccCCCeeEEEEccCCcce
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQID--STVELLKWNCMSDLLAAVVRFEEYDS 298 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~--~~V~~laWSpDg~~LAs~~~d~~~~~ 298 (1196)
.-.+.+++|+|||++||+|..|+ .|.+|+.-++. +-.+.++..|. ..|.+|+||+||++|++-+.|. +
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DG------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---t 387 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDG------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---T 387 (641)
T ss_pred ccCceeeecCCCcchhhhcccCC------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---c
Confidence 22468999999999999999875 59999963322 22233442222 3699999999999999999998 9
Q ss_pred EEEEEecCCEEEEEEEEEEecC-CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC--CeeEEEEcCCEEEEeecc
Q 000992 299 VKICFFSNNHWYLKYEIRYLRR-DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME--NSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~-~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d--~~~v~viDg~~l~lt~l~ 375 (1196)
+++|++.|..--|.--...... ..+.+.|||+... +..++.. +.+ .+...+-|-.++-.
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~-------------~~~~~~g~L~f~d~~t~d~---- 449 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSA-------------PNGMTAGTLFFFDRMTLDT---- 449 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCceE-EEecccc-------------cCCCCCceEEEEeccceee----
Confidence 9999999864221100000001 1267899998754 3333320 111 11122222222110
Q ss_pred ccCCCCCceeeeecC-CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 376 LSLMPPPMYLFSLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 376 ~~~vpppm~~~~l~~-~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.+.+.. ...|..+.|+|.- +.|.+++.||++++|--.+
T Consensus 450 ---------v~ki~i~~aSvv~~~WhpkL--NQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 450 ---------VYKIDISTASVVRCLWHPKL--NQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ---------EEEecCCCceEEEEeecchh--hheeeecCCCceEEEECcc
Confidence 022222 4568899999998 7899999999999986543
No 62
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.4e-16 Score=185.71 Aligned_cols=446 Identities=13% Similarity=0.094 Sum_probs=265.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.++++||...+..|..+-.++.|-.|++ ...-.+..+ +.+ -+...|-+++|+ +|..|-+++.+|.|.-
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~--~~~w~~~~v------i~g---~~drsIE~L~W~-e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNL--SNNWFLEPV------IHG---PEDRSIESLAWA-EGGRLFSSGLSGSITE 94 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEcc--CCCceeeEE------Eec---CCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence 7999999999999999988999999999 443221111 221 124689999999 5667778889999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee-eeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~-~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||+.+.+.. ......+.||+++.+|-+..|+++..||.+...+-.-+.+. ...+. -..+++.++
T Consensus 95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~--------------rq~sRvLsl 160 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM--------------RQKSRVLSL 160 (691)
T ss_pred EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc--------------cccceEEEE
Confidence 999886543 44444578999999999999999999996655443333332 11121 123688999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--------ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--------ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--------e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
+|.|+|..+| .|+ .|+.||+||...|...... +...-.++++.+=-+| .||||.. .++
T Consensus 161 sw~~~~~~i~-~Gs------~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS------~G~ 226 (691)
T KOG2048|consen 161 SWNPTGTKIA-GGS------IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS------AGT 226 (691)
T ss_pred EecCCccEEE-ecc------cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC------Cce
Confidence 9999999898 576 4689999999888766621 1123345666666555 5676644 468
Q ss_pred EEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC-EEEEEEEEEEecCCcEEEEEcc
Q 000992 252 IVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 252 V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
|.||+. +|.....+.. +...|.+|+-++++..+.+++.|++ ++++-...|. .|-......+|..+..+++-.+
T Consensus 227 V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~~d~vfsaGvd~~--ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSC---HDADVLALAVADNEDRVFSAGVDPK--IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred EEEEcccCcchhhhhhh---hhcceeEEEEcCCCCeEEEccCCCc--eEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999994 4433322221 3467999999999999999999982 4444444442 2532222223333332222222
Q ss_pred CCCceEEEEecCCcEEEE--------EEE-EeeecCCCe--------eEEEEcCCEEEEeeccccCCCC---C---ceee
Q 000992 330 TKPLQLICWTLDGQITTY--------NFI-WTTAVMENS--------TALVIDGSKILVTPLSLSLMPP---P---MYLF 386 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~--------~~~-~~~~~~d~~--------~v~viDg~~l~lt~l~~~~vpp---p---m~~~ 386 (1196)
. .|..+..++.+.+. +.. -...|...- +...+-...+.+|.+. ..++. + ++..
T Consensus 302 ~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG-S~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 302 N---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLG-SVILQGEYNYIHLLKL 377 (691)
T ss_pred c---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceecc-CcccccccChhhheee
Confidence 1 11111112111110 000 000011111 1222223333333332 12222 1 2222
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc---------c----------cccCCce--------eee
Q 000992 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML---------E----------DLEGTEF--------VVE 439 (1196)
Q Consensus 387 ~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~---------~----------~~~g~~~--------~~~ 439 (1196)
.+.-...|.+-+.||+| +.+|.++-. .++||.+...... . +..+... .+.
T Consensus 378 ~~k~~~nIs~~aiSPdg--~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le 454 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDG--NLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLE 454 (691)
T ss_pred ecCCccceeeeccCCCC--CEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeE
Confidence 23345678999999999 899888643 4556655420000 0 0000000 000
Q ss_pred e------------ecccc-cCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccc
Q 000992 440 A------------CISET-AFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLL 506 (1196)
Q Consensus 440 ~------------~~~~~-~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1196)
. ....+ ....+.+++-|++|.++|+.+.. ..+.+|++. + .
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~--g~I~v~nl~--~------------------~----- 507 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR--GQIFVYNLE--T------------------L----- 507 (691)
T ss_pred EEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc--ceEEEEEcc--c------------------c-----
Confidence 0 00001 12368899999999999987743 556666652 1 0
Q ss_pred cccccceeeeee-eccCCcEEEEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 507 TCAGWHAKVSTQ-IPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 507 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
. .... ..++..|++...+|.+.+.+++.+.|++|+.|+.+
T Consensus 508 -----~--~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 508 -----E--SHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred -----e--eecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 0 0111 24566788888886688999999999999999764
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.82 E-value=3.1e-18 Score=183.11 Aligned_cols=285 Identities=12% Similarity=0.128 Sum_probs=203.4
Q ss_pred EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+...+|++.|..+.|+|||..+|+++.|..|.+|+-..|.-.-.. .++|.+.|..+.|.+||..+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~--------------lkgHsgAVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV--------------LKGHSGAVMELHGMRDGSHIL 106 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee--------------eccccceeEeeeeccCCCEEE
Confidence 345567999999999999999999999999999985554322111 126778899999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1196)
+ ++ .|++|++||.++|+.......|..-++++.=+--|. ++.|+++| .++++||.- ..+ .+.
T Consensus 107 S-~g------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD------~t~kl~D~R---~k~-~~~ 169 (338)
T KOG0265|consen 107 S-CG------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD------GTLKLWDIR---KKE-AIK 169 (338)
T ss_pred E-ec------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC------ceEEEEeec---ccc-hhh
Confidence 4 44 379999999999999999999999999988333343 67777776 469999942 111 111
Q ss_pred -cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEE
Q 000992 269 -EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1196)
Q Consensus 269 -~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1196)
.+....+.++.|+-+|....+|+-|. .||+|+..+.+- ...+..|.+..+.+.-+|+|... ..-..+.++.
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn---~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~l-lsnsMd~tvr-- 241 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDN---DIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFL-LSNSMDNTVR-- 241 (338)
T ss_pred ccccceeEEEEEecccccceeeccccC---ceeeeccccCcc--eEEeecccCceeeEEeccCCCcc-ccccccceEE--
Confidence 11235689999999999999999998 899999865542 34666666555888888988752 2222333333
Q ss_pred EEEEeeecC--CCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 348 NFIWTTAVM--ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 348 ~~~~~~~~~--d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+|++.|- ....+.+-.|.. ..+.-+-...+|||++ +.+.+++.|..+++|+....
T Consensus 242 --vwd~rp~~p~~R~v~if~g~~-------------------hnfeknlL~cswsp~~--~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 242 --VWDVRPFAPSQRCVKIFQGHI-------------------HNFEKNLLKCSWSPNG--TKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred --EEEecccCCCCceEEEeecch-------------------hhhhhhcceeeccCCC--CccccccccceEEEeecccc
Confidence 3433311 112222222221 1123345678999999 89999999999999998764
Q ss_pred CccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecC
Q 000992 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1196)
..+--++ ++...|.++.|.|...++.+++.+
T Consensus 299 ~~lyklp------------Gh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 299 RILYKLP------------GHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred cEEEEcC------------CcceeEEEeeecCCCcEEEEeccC
Confidence 4432233 456789999999999998887765
No 64
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=4.5e-18 Score=198.02 Aligned_cols=368 Identities=14% Similarity=0.089 Sum_probs=244.5
Q ss_pred cceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 21 EILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 21 ~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
+.+....|-+++-.|.++|.|+.++.|-. ..+.+-|... +-.+-.+. ..+.-.+..|+|++..+..-+..|-.+
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~p--d~~tGiWv~~-vRlGe~gg---~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKP--DENTGIWVDV-VRLGEVGG---SAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEec--CCccceEEEE-EEeecccc---cccceeeEEEcCCCCEEEEecccCcEE
Confidence 37888999999989999999999999999 5555544322 22111110 023467889999999998889999999
Q ss_pred EEEC-CCCeE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-----Cceeeeeeccccc---------Ccc
Q 000992 101 LHSV-DGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-----WDLLYENPLEELA---------EGF 162 (1196)
Q Consensus 101 lw~~-~~~~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-----~d~~~~~~l~~~~---------~~~ 162 (1196)
+|.. +.... ...++|-++|..++|+|.|++|.++|.|.|-+++.+- |-.+..-++|..+ ..+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9993 22221 2344467899999999999999999999999886542 2211111111111 011
Q ss_pred ccc---cC---------------------ccc------------------------------------------------
Q 000992 163 DVH---EP---------------------ELS------------------------------------------------ 170 (1196)
Q Consensus 163 ~Vs---~t---------------------qf~------------------------------------------------ 170 (1196)
+|| |. +|.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 121 00 000
Q ss_pred ---------------------cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 171 ---------------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 171 ---------------------~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
||.-.|.+++-+|+|+++| ++.... ......|++|++.+-...+.+++|+-.|..|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliA-SaCKS~-~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIA-SACKSS-LKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEe-ehhhhC-CccceEEEEEeccchhhhheecccceEEEEEE
Confidence 7888999999999999999 443211 12456799999966666667889999999999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
|||||++|+++++|. ++.+|++......+|.+. ..|..-|++..|+||+.++|+++.|+ +|++|...+.
T Consensus 580 FSpdg~~LLsvsRDR------t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK---~VkVW~~~~~ 650 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDR------TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK---KVKVWEEPDL 650 (764)
T ss_pred ECCCCcEEEEeecCc------eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc---eEEEEeccCc
Confidence 999999999999975 699999643333444322 33455699999999999999999999 9999998875
Q ss_pred E-EEEEE--EEEEecCCcEEEEEcc----CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 308 H-WYLKY--EIRYLRRDGIRFMWHP----TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 308 ~-wylkq--~l~~~~~~~~~v~Wsp----~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
. -|.++ .+.+. ...+.+.|.| +....+.++...|.+..+.+- .. +....+ |.... +.+. +
T Consensus 651 ~d~~i~~~a~~~~~-~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~--~~-~~~~~~----~~~~~--~~~l---~ 717 (764)
T KOG1063|consen 651 RDKYISRFACLKFS-LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK--RE-HRQVTV----GTFNL--DTRL---C 717 (764)
T ss_pred hhhhhhhhchhccC-CceeeEEeeccccccccceEEEEecccEEEEEecc--cc-cccccc----eeeee--cccc---c
Confidence 1 12222 12221 1225666654 444478888888887654432 11 010000 00000 1111 2
Q ss_pred CCceeeeecCCCCEEEEEEecCC--------CCCEEEEEECCCcEEEEeCC
Q 000992 381 PPMYLFSLKFPTAVTEMAFYSKS--------SKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 381 ppm~~~~l~~~~~V~~Vafspdg--------~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+- +.+.+.|+.+.|+|.- +...||+++.|.++++++++
T Consensus 718 ~~-----~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 718 AT-----IGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cc-----cChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 22 2356778999999872 11357999999999999874
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=9.8e-19 Score=197.28 Aligned_cols=282 Identities=14% Similarity=0.149 Sum_probs=199.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccc-cCCC--CCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHI-DLEP--GDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
.+.++++|+-|-.++++|-|..+..||.. . +++.++.+ .++| +..|.+++|||.|.+|.+++..-.
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-g----------Mdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQ-G----------MDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecc-c----------ccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 68899999999999999999999999983 1 11112221 1233 467999999999999999999999
Q ss_pred EEEEECCCCeE-EE-------------eeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCceeeee-eccccc-Cc
Q 000992 99 LLLHSVDGNAT-EV-------------VGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYEN-PLEELA-EG 161 (1196)
Q Consensus 99 I~lw~~~~~~~-e~-------------vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~-~l~~~~-~~ 161 (1196)
.+|+|.++.++ |+ .| |-..++|.+|.|+.+ .+.+++.||++++|+-+- ..... -+.+-. .+
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKG-Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~-~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKG-HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN-TKSQLQVIKTKPAGG 315 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCC-ceeeeeccccccCcccceEEecCCCcEEEEecCC-chhheeEEeeccCCC
Confidence 99999998543 22 34 567899999999964 577888999999986321 11111 111111 12
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE----EEEeccCCC--ceeEEEEcCCCC
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL----QASSELKAF--MGAVLEWMPSGA 235 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l----~~~~e~~~~--~v~slawsPdG~ 235 (1196)
+. -.+.+.+|+|||+.|| .+. .|+.|++|+. .+.. ...-..|.+ .+.+|+||+||+
T Consensus 316 ~R----------v~~tsC~~nrdg~~iA-agc------~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 316 KR----------VPVTSCAWNRDGKLIA-AGC------LDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred cc----------cCceeeecCCCcchhh-hcc------cCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccc
Confidence 22 2467899999999999 454 5799999996 3322 223345666 789999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCC---cceEEEEEecCCE
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEE---YDSVKICFFSNNH 308 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~---~~~V~lW~~~n~~ 308 (1196)
+|+|=+.| .++++|+..--. + .|. .+....-...+||||-++|.+|.+-.. ..++.+++..++.
T Consensus 378 ~LlSRg~D------~tLKvWDLrq~k--k-pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 378 YLLSRGFD------DTLKVWDLRQFK--K-PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred hhhhccCC------Cceeeeeccccc--c-chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99998886 469999942100 0 111 111223457999999999999886542 2278999988765
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
+++.+.++..+...+.|||.-+ ++.+++.+|...+
T Consensus 449 --~v~ki~i~~aSvv~~~WhpkLN-Qi~~gsgdG~~~v 483 (641)
T KOG0772|consen 449 --TVYKIDISTASVVRCLWHPKLN-QIFAGSGDGTAHV 483 (641)
T ss_pred --eEEEecCCCceEEEEeecchhh-heeeecCCCceEE
Confidence 5677777544447789999765 4888888887764
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.82 E-value=1.4e-17 Score=182.04 Aligned_cols=321 Identities=14% Similarity=0.159 Sum_probs=231.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+-+.+.+|....+.++++|..-+.|++ .+++.. . .+.+| .+.|+++.||.||.+||+|.-+|.|++
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~--~~ge~~--~-----eltgH----KDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDI--STGEFA--G-----ELTGH----KDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEc--cCCcce--e-----EecCC----CCceEEEEEccCceEEEecCCCccEEE
Confidence 5677788897777778888888999999 666632 1 15666 579999999999999999999999999
Q ss_pred EECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
|...++..+ +.+. -+.|.-+.|.|-+.+|+.|+.||.|-+|...-... . .-|.+|...+.+=
T Consensus 133 ~~~stg~~~~~~~~e-~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~--------------kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQE-VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-C--------------KVMSGHNSPCTCG 196 (399)
T ss_pred EEcccCceEEEeecc-cCceEEEEecccccEEEeecCCCcEEEEECCCcce-e--------------eEecCCCCCcccc
Confidence 999987544 4433 35688899999999999999999998886321110 0 1233666777888
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc-eeEEEEcCCCCeEEEEecCCC----CCCCCeEEE
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-GAVLEWMPSGANIAAVYDRKS----ENKCPSIVF 254 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~-v~slawsPdG~~IAs~s~d~~----~~~~~~V~~ 254 (1196)
.|.|||+.++ +++ .|++|++||..+|+.+......++. -+.++++-.|.++..++.+.. +.....|++
T Consensus 197 ~f~pdGKr~~-tgy------~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 197 EFIPDGKRIL-TGY------DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred cccCCCceEE-EEe------cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 8999999999 676 3699999999999888766543332 478899999999888877532 111233444
Q ss_pred EeCC-CeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 255 YERN-GLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
...+ +- .+. ......|.++.||.+=.+.|+|+-|+ +|-|||.... .+.+.. -++..++.+.|.+
T Consensus 270 ~~n~~~~-----~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG---~i~iyD~a~~--~~R~~c-~he~~V~~l~w~~- 337 (399)
T KOG0296|consen 270 CNNGTVP-----ELKPSQEELDESVESIPSSSKLPLAACGSVDG---TIAIYDLAAS--TLRHIC-EHEDGVTKLKWLN- 337 (399)
T ss_pred ecCCCCc-----cccccchhhhhhhhhcccccccchhhcccccc---eEEEEecccc--hhheec-cCCCceEEEEEcC-
Confidence 3332 11 011 11235688888999999999999999 9999998753 232222 1223348899998
Q ss_pred CCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE
Q 000992 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lA 409 (1196)
.+. |...+.+|.+.. |+ -|.++ +.++. +|...|.+.+.+|+. +.+.
T Consensus 338 t~~-l~t~c~~g~v~~----wD---------------------aRtG~-----l~~~y~GH~~~Il~f~ls~~~--~~vv 384 (399)
T KOG0296|consen 338 TDY-LLTACANGKVRQ----WD---------------------ARTGQ-----LKFTYTGHQMGILDFALSPQK--RLVV 384 (399)
T ss_pred cch-heeeccCceEEe----ee---------------------ccccc-----eEEEEecCchheeEEEEcCCC--cEEE
Confidence 444 566666676543 22 22111 12333 588999999999999 8999
Q ss_pred EEECCCcEEEEeCC
Q 000992 410 AILSDGCLCVVDLP 423 (1196)
Q Consensus 410 s~~~dg~v~lw~~~ 423 (1196)
+++.|++.++|+.+
T Consensus 385 T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 385 TVSDDNTALVFEVP 398 (399)
T ss_pred EecCCCeEEEEecC
Confidence 99999999999874
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.82 E-value=1.3e-17 Score=182.34 Aligned_cols=321 Identities=16% Similarity=0.148 Sum_probs=222.6
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
.+.|-+++.+|+.+.+|+|+.|..-.||+..++.. ++.| |.+.|.++.||.||.+||+|.-+|.|++|.-.-.. ..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~-~~ 141 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG-EQ 141 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecCCCccEEEEEcccCc-eE
Confidence 47899999999999999999999999999998764 4666 69999999999999999999999999998522100 00
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
..+. +.+ +.+.=+.|.|-+.+|+ .++ .|+.+.+|...++...+++.+|.....+-.|.|
T Consensus 142 ~~~~-----~e~---------~dieWl~WHp~a~ill-AG~------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 142 WKLD-----QEV---------EDIEWLKWHPRAHILL-AGS------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP 200 (399)
T ss_pred EEee-----ccc---------CceEEEEecccccEEE-eec------CCCcEEEEECCCcceeeEecCCCCCcccccccC
Confidence 1110 011 2345689999999998 465 578999999977788889999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
||++|+++..|. +|++|+. .|. ..+.+.......-..++++.+|..+..+..++ .+.+-.....+-.-
T Consensus 201 dGKr~~tgy~dg------ti~~Wn~ktg~--p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~---~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 201 DGKRILTGYDDG------TIIVWNPKTGQ--PLHKITQAEGLELPCISLNLAGSTLTKGNSEG---VACGVNNGSGKVVN 269 (399)
T ss_pred CCceEEEEecCc------eEEEEecCCCc--eeEEecccccCcCCccccccccceeEeccCCc---cEEEEccccceEEE
Confidence 999999999864 6999994 452 22334322223455788899999988888887 44443332221000
Q ss_pred E-----EEEEEecCC----cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 312 K-----YEIRYLRRD----GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 312 k-----q~l~~~~~~----~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
. -++...+.. .-++.|+..-|+ ..+...|| +|.+|++..+-+
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL-------------------------~A~G~vdG-~i~iyD~a~~~~--- 320 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPL-------------------------AACGSVDG-TIAIYDLAASTL--- 320 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccch-------------------------hhcccccc-eEEEEecccchh---
Confidence 0 000000000 011222222221 11223344 456666654321
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEE
Q 000992 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLL 462 (1196)
Q Consensus 383 m~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~ll 462 (1196)
.+..+|+..|..+-|-++ ..|++++.||+|++||.-++.+..+..|| ...|..++.+|+.+++
T Consensus 321 --R~~c~he~~V~~l~w~~t---~~l~t~c~~g~v~~wDaRtG~l~~~y~GH------------~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 321 --RHICEHEDGVTKLKWLNT---DYLLTACANGKVRQWDARTGQLKFTYTGH------------QMGILDFALSPQKRLV 383 (399)
T ss_pred --heeccCCCceEEEEEcCc---chheeeccCceEEeeeccccceEEEEecC------------chheeEEEEcCCCcEE
Confidence 134578999999999995 48899999999999999887666555554 4578999999999999
Q ss_pred EEEecCCCCceEEEE
Q 000992 463 SVSHHGPRHSNYFRG 477 (1196)
Q Consensus 463 a~~~~~~~~~~~~~~ 477 (1196)
.+++++ +...++.
T Consensus 384 vT~s~D--~~a~VF~ 396 (399)
T KOG0296|consen 384 VTVSDD--NTALVFE 396 (399)
T ss_pred EEecCC--CeEEEEe
Confidence 998886 4444443
No 68
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=4.1e-17 Score=184.46 Aligned_cols=270 Identities=12% Similarity=0.080 Sum_probs=170.8
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEE-EEEeCCceEEEEecc-CceeeeeecccccCcccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLL-GVTTGFGQILVMTHD-WDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~L-A~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~V 164 (1196)
..+++++.||+|.+||..++++. .... ...+.+++|||||+.| ++++.++.|.+|+.. ...+.....+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------- 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV-GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-------- 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC-CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--------
Confidence 46788899999999999886543 3332 3457889999999987 556778899988632 2222211111
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
.....++|+|||++++ ++. ..++++++||..+++.....+. .....+++|+|+|+++++++.+.
T Consensus 73 ---------~~~~~~~~~~~g~~l~-~~~-----~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 73 ---------PDPELFALHPNGKILY-IAN-----EDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred ---------CCccEEEECCCCCEEE-EEc-----CCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCC
Confidence 1235789999999887 443 1367999999977777666542 23357899999999999987642
Q ss_pred CCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEE-ccCCcceEEEEEecCCEEEEEEEEEEecC---
Q 000992 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFSNNHWYLKYEIRYLRR--- 320 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~-~d~~~~~V~lW~~~n~~wylkq~l~~~~~--- 320 (1196)
..+.+|+.+....-. .+.. ...+..++|+|||+.|++++ .++ .|++|+..+... ...+.+...
T Consensus 137 -----~~~~~~d~~~~~~~~-~~~~--~~~~~~~~~s~dg~~l~~~~~~~~---~v~i~d~~~~~~--~~~~~~~~~~~~ 203 (300)
T TIGR03866 137 -----NMAHFIDTKTYEIVD-NVLV--DQRPRFAEFTADGKELWVSSEIGG---TVSVIDVATRKV--IKKITFEIPGVH 203 (300)
T ss_pred -----CeEEEEeCCCCeEEE-EEEc--CCCccEEEECCCCCEEEEEcCCCC---EEEEEEcCccee--eeeeeecccccc
Confidence 346677765322111 1111 22456899999999886655 466 899999987543 122322211
Q ss_pred --C--cEEEEEccCCCceEEEEe-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEE
Q 000992 321 --D--GIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVT 395 (1196)
Q Consensus 321 --~--~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~ 395 (1196)
. ...+.|+|++.. +.+.. .++ ++.+|+...+.+ ...+.+...+.
T Consensus 204 ~~~~~~~~i~~s~dg~~-~~~~~~~~~-------------------------~i~v~d~~~~~~-----~~~~~~~~~~~ 252 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKT-AFVALGPAN-------------------------RVAVVDAKTYEV-----LDYLLVGQRVW 252 (300)
T ss_pred cccCCccceEECCCCCE-EEEEcCCCC-------------------------eEEEEECCCCcE-----EEEEEeCCCcc
Confidence 1 134677877764 22221 122 122222211100 01122345688
Q ss_pred EEEEecCCCCCEEEEEE-CCCcEEEEeCCCCCcc
Q 000992 396 EMAFYSKSSKNCLAAIL-SDGCLCVVDLPAPDML 428 (1196)
Q Consensus 396 ~Vafspdg~~~~lAs~~-~dg~v~lw~~~~~~~~ 428 (1196)
+++|+|+| +.|+++. .+|+|.+|+..+..+.
T Consensus 253 ~~~~~~~g--~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 253 QLAFTPDE--KYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred eEEECCCC--CEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999999 8888764 5899999999875443
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.82 E-value=6.5e-20 Score=195.93 Aligned_cols=270 Identities=15% Similarity=0.102 Sum_probs=183.2
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~ 194 (1196)
...+.|+.|||||++|+++|-||-|-+|+- .++......... ..+|.-+++.|.+|+||.|.+++| +++
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA--------qd~fMMmd~aVlci~FSRDsEMlA-sGs- 282 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA--------QDNFMMMDDAVLCISFSRDSEMLA-SGS- 282 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh--------hcceeecccceEEEeecccHHHhh-ccC-
Confidence 567999999999999999999999999862 222211111111 124556889999999999999999 676
Q ss_pred ccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCC
Q 000992 195 CNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQID 272 (1196)
Q Consensus 195 d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~ 272 (1196)
.|++|+||...+|+++..++ .|...+.+++||.|+..|.|++.| .+|++.- +.|....+| ++ +.
T Consensus 283 -----qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD------~tvRiHGlKSGK~LKEf--rG-Hs 348 (508)
T KOG0275|consen 283 -----QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD------QTVRIHGLKSGKCLKEF--RG-HS 348 (508)
T ss_pred -----cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc------ceEEEeccccchhHHHh--cC-cc
Confidence 47999999999999999987 788889999999999999999996 4688764 344433333 23 45
Q ss_pred CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-c-EEEEEccCCCceEEEEecCCcEEEEEEE
Q 000992 273 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1196)
Q Consensus 273 ~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1196)
..|+...|++||..+.++++|+ +|++|+.++..+ .+++...+++ . .++.--|.+|..+.+.+.++++.+.+..
T Consensus 349 Syvn~a~ft~dG~~iisaSsDg---tvkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDG---TVKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred ccccceEEcCCCCeEEEecCCc---cEEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 6799999999999999999999 999999886543 1233222222 1 5555667776656555555554443321
Q ss_pred Eee----e---------------cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEE
Q 000992 351 WTT----A---------------VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAA 410 (1196)
Q Consensus 351 ~~~----~---------------~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs 410 (1196)
-.+ . |.+.-+.++..+..+.-.....+.. -+++. |...|..++-+|.. +.||+
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L-----E~tl~VhEkdvIGl~HHPHq--NllAs 496 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL-----ERTLPVHEKDVIGLTHHPHQ--NLLAS 496 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce-----eeeeecccccccccccCccc--chhhh
Confidence 111 0 1111112222222221111111111 12232 56667889989988 89999
Q ss_pred EECCCcEEEEe
Q 000992 411 ILSDGCLCVVD 421 (1196)
Q Consensus 411 ~~~dg~v~lw~ 421 (1196)
.+.||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999996
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.6e-18 Score=201.11 Aligned_cols=277 Identities=16% Similarity=0.148 Sum_probs=193.2
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee-cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV-EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~-~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
+.+=+.|+ -.+.||+|. +-.|.+|+..++.+..+-.. ...|+++.|+|+|..||+|+.+|+|.+|+.. .....
T Consensus 179 Y~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~----~~k~~ 252 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK----EQKKT 252 (484)
T ss_pred hhhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehh----hcccc
Confidence 45667888 445777776 44799999998876432222 7889999999999999999999999998632 11111
Q ss_pred ccccCccccccCcccc-CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCC
Q 000992 156 EELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPS 233 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~-~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPd 233 (1196)
... .+ |...|-+++|+ +..+. +++ .++.|.++|...++.... ..+|...|..++|+||
T Consensus 253 ~~~-----------~~~h~~rvg~laW~--~~~ls-sGs------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 253 RTL-----------RGSHASRVGSLAWN--SSVLS-SGS------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred ccc-----------cCCcCceeEEEecc--CceEE-Eec------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 111 12 56788999999 43444 554 578999999876655444 7789999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
|+++|||+.| +.+.+|+....... +.+. .|.+.|.+++|+| .+.+||+|+... ..+|++|++.+.+- .
T Consensus 313 ~~~lASGgnD------N~~~Iwd~~~~~p~-~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~-D~~i~fwn~~~g~~--i 381 (484)
T KOG0305|consen 313 GNQLASGGND------NVVFIWDGLSPEPK-FTFT-EHTAAVKALAWCPWQSGLLATGGGSA-DRCIKFWNTNTGAR--I 381 (484)
T ss_pred CCeeccCCCc------cceEeccCCCcccc-EEEe-ccceeeeEeeeCCCccCceEEcCCCc-ccEEEEEEcCCCcE--e
Confidence 9999999886 46889997433221 2222 3467899999999 567999976432 22899999997652 1
Q ss_pred EEEEEecCCc-EEEEEccCCCceEEEEec--CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 313 YEIRYLRRDG-IRFMWHPTKPLQLICWTL--DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 313 q~l~~~~~~~-~~v~Wsp~~~~~L~~~~~--~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
+.+ ...++ ..+.|++.... |....+ .+ .|.+|.+.. ..++. .-..
T Consensus 382 ~~v--dtgsQVcsL~Wsk~~kE-i~sthG~s~n-------------------------~i~lw~~ps---~~~~~-~l~g 429 (484)
T KOG0305|consen 382 DSV--DTGSQVCSLIWSKKYKE-LLSTHGYSEN-------------------------QITLWKYPS---MKLVA-ELLG 429 (484)
T ss_pred ccc--ccCCceeeEEEcCCCCE-EEEecCCCCC-------------------------cEEEEeccc---cceee-eecC
Confidence 222 12333 78999998764 322221 11 233333211 01111 1125
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
|...|..+++|||| ..+++++.|.|+++|++-+
T Consensus 430 H~~RVl~la~SPdg--~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 430 HTSRVLYLALSPDG--ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CcceeEEEEECCCC--CEEEEecccCcEEeccccC
Confidence 89999999999999 8999999999999999865
No 71
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=1.2e-17 Score=202.96 Aligned_cols=231 Identities=12% Similarity=0.053 Sum_probs=153.4
Q ss_pred EECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-Cce-eeeeecccccCccccccCc
Q 000992 93 GTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDL-LYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 93 as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~-~~~~~l~~~~~~~~Vs~tq 168 (1196)
|+.+|.|++|+..... +..+..|.+.|.+++|||+ +.+||+++.|++|++|+.. ... .... . .++ ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--~-----~p~--~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--K-----DPQ--CI 120 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--c-----cce--EE
Confidence 5567889999976543 3344457899999999997 8999999999999998632 110 1000 0 000 12
Q ss_pred cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCC
Q 000992 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1196)
Q Consensus 169 f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~ 248 (1196)
+.+|...|.+++|+|+|.+++.+++ .|++|+|||..+|+...... +...+.+++|+|+|++||+++.|
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS------~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D----- 188 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSG------FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG----- 188 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEe------CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC-----
Confidence 4467788999999999987641444 47999999998888776665 45678999999999999999875
Q ss_pred CCeEEEEeC-CCeeEEEEEeccCCCC----cEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCEEEEEEEEEEecCCc
Q 000992 249 CPSIVFYER-NGLERSSFDINEQIDS----TVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1196)
Q Consensus 249 ~~~V~~~e~-nGl~~~~f~l~~~~~~----~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~wylkq~l~~~~~~~ 322 (1196)
..|++|+. .|....+ +..|... .++...|++|+.+|++++.++. ..+|+|||+.+..--+ +.+..+....
T Consensus 189 -~~IrIwD~Rsg~~i~t--l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl-~~~~ld~~~~ 264 (568)
T PTZ00420 189 -KHMHIIDPRKQEIASS--FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL-VTMSIDNASA 264 (568)
T ss_pred -CEEEEEECCCCcEEEE--EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce-EEEEecCCcc
Confidence 46999994 4444333 3333211 1334457799999999887742 1279999988632111 1222221112
Q ss_pred -EEEEEccCCCceEEEEecCCcEEEEE
Q 000992 323 -IRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 323 -~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
..-.|+++.+..+..+.+|+.+..++
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 34567777666566666666655433
No 72
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.81 E-value=2.5e-19 Score=201.67 Aligned_cols=281 Identities=14% Similarity=0.110 Sum_probs=208.2
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCC-C-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDG-N-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~-~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
...|.++.|+| .+..|.+++-||.|+||+.-+ + .+.+.-+|..+|.+++||++|..+.++|-|++|++|+ +-+
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD----tET 289 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD----TET 289 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec----ccc
Confidence 35899999999 889999999999999999854 3 4456666799999999999999999999999998764 334
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw 230 (1196)
+..+.... .+....++.|.||+ +.|. +|+ .++.|+-||..+|++......|-+.+.+|.|
T Consensus 290 G~~~~~f~------------~~~~~~cvkf~pd~~n~fl-~G~------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 290 GQVLSRFH------------LDKVPTCVKFHPDNQNIFL-VGG------SDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred ceEEEEEe------------cCCCceeeecCCCCCcEEE-Eec------CCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 33332221 01234899999999 5665 564 4789999999999988877778889999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-CE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-~~ 308 (1196)
-|+|+..++++++. .|++||-. +-.+. +.. .+.......|.-+|++..+|..+-|. .|-++.+.+ +.
T Consensus 351 ~~~g~rFissSDdk------s~riWe~~~~v~ik-~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~~r 419 (503)
T KOG0282|consen 351 VDEGRRFISSSDDK------SVRIWENRIPVPIK-NIA-DPEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPPFR 419 (503)
T ss_pred ccCCceEeeeccCc------cEEEEEcCCCccch-hhc-chhhccCcceecCCCCCeehhhccCc---eEEEEecccccc
Confidence 99999999999975 59999842 11111 111 11223577899999999999999998 888888654 21
Q ss_pred EEEEEEEEEecCCc--EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 309 WYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 309 wylkq~l~~~~~~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
-..|..+..|.-.+ ..+.|||||.. |+.++.+|.+.+++|. +. ++- .
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwk--t~---------------kl~-------------~ 468 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWK--TT---------------KLV-------------S 468 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeech--hh---------------hhh-------------h
Confidence 11223333333233 77999999975 7888878877554432 11 100 1
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 387 ~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
.+ .|+.++..|.|+|--. +.+|+++.||.|++|+
T Consensus 469 ~lkah~~~ci~v~wHP~e~-Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVEP-SKVATCGWDGLIKIWD 503 (503)
T ss_pred ccccCCcceEEEEecCCCc-ceeEecccCceeEecC
Confidence 12 2667889999999864 7899999999999996
No 73
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.9e-18 Score=202.08 Aligned_cols=268 Identities=17% Similarity=0.264 Sum_probs=200.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
..+.++||++++.|++|+.|+.|..|+-+ .-+. .|..+. . .+..|.++ .-++..|++++.+++|..
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~--sd~e------~P~ti~---~-~g~~v~~i--a~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTN--SDEE------EPETID---I-SGELVSSI--ACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecC--Cccc------CCchhh---c-cCceeEEE--eecccceEEeeccceEEE
Confidence 57889999999999999999999999973 1111 121111 0 13345555 455679999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|....++-. ++..+.-+++++++|-+|+++|.||.|-.|++.+- .|.-.+ ..+++|+..|.+++
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~-~D~s~~--------------~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL-DDSSQE--------------KVLRGHDAPVLQLS 145 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEec-cccchh--------------eeecccCCceeeee
Confidence 999887665 67778889999999999999999999999987642 222222 22447889999999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC--------CCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK--------AFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~--------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
+.|.|++|| |++ .+++|+|||.++|.+..++.+. ......++|+|+|..+|....+ +.|
T Consensus 146 ~~p~~~fLA-vss------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d------~~V 212 (933)
T KOG1274|consen 146 YDPKGNFLA-VSS------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD------NTV 212 (933)
T ss_pred EcCCCCEEE-EEe------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC------CeE
Confidence 999999999 676 3689999999999888776543 2345788999997766666654 579
Q ss_pred EEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCC
Q 000992 253 VFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK 331 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~ 331 (1196)
++|.++|+.+ +|.|+.. ....+..++|||.|++||++.-++ .|-+|++.. |- . ++. ...+.+.+|.|+.
T Consensus 213 kvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g---~I~vWnv~t-~~-~-~~~---~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 213 KVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG---QILVWNVDT-HE-R-HEF---KRAVCCEAWKPNA 282 (933)
T ss_pred EEEccCCcee-heeecccccccceEEEEEcCCCcEEeeeccCC---cEEEEeccc-ch-h-ccc---cceeEEEecCCCC
Confidence 9999999876 4778733 233488999999999999999999 899999986 31 1 111 1123779999998
Q ss_pred CceEEEEecCC
Q 000992 332 PLQLICWTLDG 342 (1196)
Q Consensus 332 ~~~L~~~~~~g 342 (1196)
+. +.+.+..|
T Consensus 283 n~-it~~~~~g 292 (933)
T KOG1274|consen 283 NA-ITLITALG 292 (933)
T ss_pred Ce-eEEEeecc
Confidence 74 44444334
No 74
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.80 E-value=1.4e-17 Score=181.08 Aligned_cols=282 Identities=10% Similarity=0.036 Sum_probs=207.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.++|.+|++-|-.+.+|+++.|++|+|||+.+|++. .+..|-..|..+++|+---+|.+++.|++|+.|+...+ .
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n----k 226 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN----K 226 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh----h
Confidence 378999999999999999999999999999999876 44446788999999999999999999999998764322 1
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
-+. .+++|-.+|.+++-.|-=..|+ .++ .|.++||||..+-....++.+|...|.++.+.|-
T Consensus 227 vIR-----------~YhGHlS~V~~L~lhPTldvl~-t~g------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 227 VIR-----------HYHGHLSGVYCLDLHPTLDVLV-TGG------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred hHH-----------HhccccceeEEEeccccceeEE-ecC------CcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 111 1336667899999999999999 454 4799999999899999999999999999999997
Q ss_pred CCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
.-.|.++|.|. +|+||+ ++|..-- ++. ++...|.+++.+|.-...|+++.|. |+-|++..... -
T Consensus 289 dpqvit~S~D~------tvrlWDl~agkt~~--tlt-~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~f--~ 353 (460)
T KOG0285|consen 289 DPQVITGSHDS------TVRLWDLRAGKTMI--TLT-HHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGEF--L 353 (460)
T ss_pred CCceEEecCCc------eEEEeeeccCceeE--eee-cccceeeEEecCCchhhhhccCCcc----ceeccCCccch--h
Confidence 77888999875 699999 5664422 233 3345799999999999999999997 99998875432 1
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc-------cCCCCCcee
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-------SLMPPPMYL 385 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~-------~~vpppm~~ 385 (1196)
+.+..+...+..+.=..|+ .+..+..+|. +..|+++. .-++.|-+
T Consensus 354 ~nlsgh~~iintl~~nsD~--v~~~G~dng~-------------------------~~fwdwksg~nyQ~~~t~vqpGS- 405 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG--VLVSGGDNGS-------------------------IMFWDWKSGHNYQRGQTIVQPGS- 405 (460)
T ss_pred hccccccceeeeeeeccCc--eEEEcCCceE-------------------------EEEEecCcCcccccccccccCCc-
Confidence 2232221111222222222 1222222333 33333221 11223322
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+.....|.+-+|-..| ..|.++..|.+|++|.-+..
T Consensus 406 --l~sEagI~as~fDktg--~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 406 --LESEAGIFASCFDKTG--SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred --cccccceeEEeecccC--ceEEeccCCcceEEEecccc
Confidence 3445678899999999 89999999999999998753
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=9.3e-19 Score=182.34 Aligned_cols=278 Identities=17% Similarity=0.172 Sum_probs=207.0
Q ss_pred CCEEEEEEcc---CCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLM---EKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~sp---d~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
..|+.++||| +|-.|++|+.||.=.|-+-+||.. -+...|.+.|++...+.+...-|+++.|-+-++ |+.++
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv----w~a~t 90 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV----WDAVT 90 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh----hhhhh
Confidence 4689999986 788999999999999988888764 355567999999999999999999999988866 55666
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaw 230 (1196)
+-.++... |..-|..++|+.|.++|. .++ .++.+||||.+.- .......+|.+.|..+-|
T Consensus 91 gdelhsf~------------hkhivk~~af~~ds~~ll-tgg------~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 91 GDELHSFE------------HKHIVKAVAFSQDSNYLL-TGG------QEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred hhhhhhhh------------hhheeeeEEecccchhhh-ccc------hHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 66666553 344578999999999999 565 3588999998432 233345678999999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
.-.-+.|.|+++++ +|++|+ +.|.+...+.++ ..|.++..|+||++|.++... +|++|+.++..-
T Consensus 152 c~eD~~iLSSadd~------tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTia~gs----sV~Fwdaksf~~ 217 (334)
T KOG0278|consen 152 CHEDKCILSSADDK------TVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTIAYGS----SVKFWDAKSFGL 217 (334)
T ss_pred eccCceEEeeccCC------ceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEEecCc----eeEEeccccccc
Confidence 99999999987764 699999 567665543332 358999999999999998765 499999998652
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
|| +...+ ..+.+.+-+|++. .+..+..++.+..+++. + |..+-. +.-+
T Consensus 218 -lK-s~k~P-~nV~SASL~P~k~-~fVaGged~~~~kfDy~--T------------geEi~~--------------~nkg 265 (334)
T KOG0278|consen 218 -LK-SYKMP-CNVESASLHPKKE-FFVAGGEDFKVYKFDYN--T------------GEEIGS--------------YNKG 265 (334)
T ss_pred -ee-eccCc-cccccccccCCCc-eEEecCcceEEEEEecc--C------------Cceeee--------------cccC
Confidence 22 22221 2335677899884 34554444433333322 1 111110 1124
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
|.++|.+|.||||| ...|+++.||+|+||+...
T Consensus 266 h~gpVhcVrFSPdG--E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDG--ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CCCceEEEEECCCC--ceeeccCCCceEEEEEecC
Confidence 88999999999999 8999999999999999864
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.1e-17 Score=175.90 Aligned_cols=239 Identities=16% Similarity=0.127 Sum_probs=181.5
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+..++||+- .|.+++++.+..|..||. .+.+-...+. ..+.=..+.|+|+|+++|++..|..|.
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~--r~~k~~~~i~------------~~~eni~i~wsp~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDI--RSGKCTARIE------------TKGENINITWSPDGEYIAVGNKDDRIT 131 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEe--ccCcEEEEee------------ccCcceEEEEcCCCCEEEEecCcccEE
Confidence 5677788854 688888899999999998 4443212221 123456789999999999999999999
Q ss_pred EEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
..|..+.++.......-.+.-++|+-++.+....++.|+|.+++ ..-+++..+. +|.....+|
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~----------------AH~snCicI 195 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK----------------AHPSNCICI 195 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc----------------cCCcceEEE
Confidence 99988765543333455688899999999999999999998875 2223332222 556678999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
.|+|||+||| +|+. |..+-+||.++-.+..++..++-+|..|+||-||++|||+|.|. -.+|..- ..|
T Consensus 196 ~f~p~GryfA-~GsA------DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh----~IDIA~v-etG 263 (313)
T KOG1407|consen 196 EFDPDGRYFA-TGSA------DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH----FIDIAEV-ETG 263 (313)
T ss_pred EECCCCceEe-eccc------cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc----eEEeEec-ccC
Confidence 9999999999 7874 57899999988888898888999999999999999999999874 2333322 345
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCc------ceEEEEEecC
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY------DSVKICFFSN 306 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~------~~V~lW~~~n 306 (1196)
.+.-+. +.++..+.|||+|..-+||-++.|..+ .+|+|+-..|
T Consensus 264 d~~~eI----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 264 DRVWEI----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred CeEEEe----eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 544332 345668899999999999999998754 3777775543
No 77
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=2.2e-15 Score=170.10 Aligned_cols=413 Identities=13% Similarity=0.077 Sum_probs=273.6
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--------E
Q 000992 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--------L 99 (1196)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~--------I 99 (1196)
+=+-++.||++..-..++-|.- ..+.. ..+| ++.|.+++.+||--.+++|-..|+ |
T Consensus 73 ~lptgE~vyfvA~V~Vl~n~ee--~~Qr~----------y~GH----~ddikc~~vHPdri~vatGQ~ag~~g~~~~phv 136 (626)
T KOG2106|consen 73 LLPTGELVYFVAAVGVLYNWEE--RSQRH----------YLGH----NDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHV 136 (626)
T ss_pred EccCccEEEEeccEEEEEeehh--hhccc----------ccCC----CCceEEEeecCCceeeccCcccccCCCcCCCee
Confidence 4466788888876655665543 11111 2223 568999999999888887766664 8
Q ss_pred EEEECCC-CeEEEeeeecCcEEEEEECCC--CCEEEEEe--CCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDG-NATEVVGRVEGGVRFISPSPD--GDLLGVTT--GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~-~~~e~vg~~~~~I~~~awSPD--g~~LA~~s--~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
++||..+ ..+.++|..+.||.|++||+- |.+|+... .+..+.+|+..|. ..+.+-. ...+
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~----~~~~~vk-----------~sne 201 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK----AKLGPVK-----------TSNE 201 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhh----hccCcce-----------eccc
Confidence 9999766 345678888999999999984 45555553 3444556543322 1111110 1124
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE---eccCC-CceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKA-FMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~---~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
.+....|.|-+.-+. +.. +.+.+..|+++.|.+... ++.++ ..|.+++|.|+|..|..=| ..
T Consensus 202 ~v~~a~FHPtd~nli-it~------Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS-------~G 267 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLI-ITC------GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDS-------GG 267 (626)
T ss_pred eEEEEEeccCCCcEE-EEe------CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecC-------Cc
Confidence 567889999888776 554 468999999977766553 44432 5689999999999775432 35
Q ss_pred eEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 251 SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 251 ~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
.|.+|.+.|.+...-.. .|++.|.+|+---||++|. |+.|+ .|-+|+ .||.- .+++..+...+....--+.
T Consensus 268 ~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDR---ki~~Wd-~~y~k--~r~~elPe~~G~iRtv~e~ 338 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDR---KIILWD-DNYRK--LRETELPEQFGPIRTVAEG 338 (626)
T ss_pred eEEEEeCCCceEEeEee--ecCCceEEEEEecCccEee-cCccc---eEEecc-ccccc--cccccCchhcCCeeEEecC
Confidence 79999997766543222 3467899999999999888 99999 899999 77653 2344444332211111133
Q ss_pred CCceEEEEecCCcEEE--------------EEEEEeee--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCE
Q 000992 331 KPLQLICWTLDGQITT--------------YNFIWTTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 331 ~~~~L~~~~~~g~~~~--------------~~~~~~~~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V 394 (1196)
++- |.+++..+.+.. .+-.|..+ |++...+.....+++.+|. ....+ ++.....++
T Consensus 339 ~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~------wt~~~~d~~ 410 (626)
T KOG2106|consen 339 KGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLE------WTKIIEDPA 410 (626)
T ss_pred CCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCcee------EEEEecCce
Confidence 332 566665443332 11234444 6666666667777888887 22211 444567889
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceE
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY 474 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~ 474 (1196)
.+++|.|.| .+|+++..|...+.+.++..... +. .....+.-+.|+|+|.+||+++.+ +.+.
T Consensus 411 ~~~~fhpsg---~va~Gt~~G~w~V~d~e~~~lv~--------~~-----~d~~~ls~v~ysp~G~~lAvgs~d--~~iy 472 (626)
T KOG2106|consen 411 ECADFHPSG---VVAVGTATGRWFVLDTETQDLVT--------IH-----TDNEQLSVVRYSPDGAFLAVGSHD--NHIY 472 (626)
T ss_pred eEeeccCcc---eEEEeeccceEEEEecccceeEE--------EE-----ecCCceEEEEEcCCCCEEEEecCC--CeEE
Confidence 999999998 99999999999999988643331 10 113468888999999999999986 6777
Q ss_pred EEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEE
Q 000992 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1196)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~ 550 (1196)
++.+.-+| .++........ ++|+.+-+|+ |++.+.-++.|=.++.|
T Consensus 473 iy~Vs~~g----------------------------~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 473 IYRVSANG----------------------------RKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEECCCC----------------------------cEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEE
Confidence 88775433 22322222222 7889999988 88888888888888888
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=2.9e-17 Score=196.53 Aligned_cols=265 Identities=9% Similarity=0.068 Sum_probs=176.5
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc----------------c-----c----------
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE----------------L-----A---------- 159 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~----------------~-----~---------- 159 (1196)
+-+.|++.|+++.|||||++||+|+.|+.|+||.-.-++........ . .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 34478999999999999999999999999999863321111000000 0 0
Q ss_pred --C--cccc-------ccCc---cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 160 --E--GFDV-------HEPE---LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 160 --~--~~~V-------s~tq---f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
+ ...+ +++- |.||.+.|..|+||-++ +|. +++ -|+|||+|++..-+++.++. |...|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLL-SSS------MDKTVRLWh~~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLL-SSS------MDKTVRLWHPGRKECLKVFS-HNDFV 412 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeE-ecc------ccccEEeecCCCcceeeEEe-cCCee
Confidence 0 0000 0222 33899999999999888 455 355 37999999998889999998 78889
Q ss_pred eEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 226 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 226 ~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
++|+|+| |-+++.||+-| ..|++|..-..+.-.+ ..-..-|.+++|+|||+...+|+-+| ..+++++
T Consensus 413 TcVaFnPvDDryFiSGSLD------~KvRiWsI~d~~Vv~W---~Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t 480 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLD------GKVRLWSISDKKVVDW---NDLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDT 480 (712)
T ss_pred EEEEecccCCCcEeecccc------cceEEeecCcCeeEee---hhhhhhheeEEeccCCceEEEEEecc---EEEEEEc
Confidence 9999999 67899999986 5799998644332211 11124699999999999999999999 8999999
Q ss_pred cCCEEEEEEEEEEecC-----C-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 305 SNNHWYLKYEIRYLRR-----D-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~-----~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
.+...-....+..+.. . ++.+.+.|..+..+.+.+.|. +|+|.+.+...
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS-------------------------rIRI~d~~~~~ 535 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDS-------------------------RIRIYDGRDKD 535 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCC-------------------------ceEEEeccchh
Confidence 8865444444443321 1 145556555554344433333 34444332111
Q ss_pred CCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 379 MPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 379 vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+- +-++-..-...=....|++|| +.|++++.|..|++|+.+..
T Consensus 536 lv--~KfKG~~n~~SQ~~Asfs~Dg--k~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 536 LV--HKFKGFRNTSSQISASFSSDG--KHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hh--hhhcccccCCcceeeeEccCC--CEEEEeecCceEEEEeCCCC
Confidence 10 000001111222467899999 99999999999999998753
No 79
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.77 E-value=3.3e-18 Score=192.74 Aligned_cols=278 Identities=12% Similarity=0.094 Sum_probs=201.9
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++-|-+ -+-.+.+++-|+.|+.|++ ..... -+.| +.+| ...|.++.|+.+|..+.+++-|+.|+
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~v--y~~~~--~lrt----f~gH----~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNV--YDDRR--CLRT----FKGH----RKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEE--ecCcc--eehh----hhcc----hhhhhhhhccccCCeeeeeecceeee
Confidence 455555666 5677778888999999999 44211 1111 3344 35799999999999999999999999
Q ss_pred EEECCCCeEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+||.+||++..-.+.+..+.|+.|.||+ +++.+|+.|+.|+.|+ |..+.+.+..- |-..+..
T Consensus 284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------------hLg~i~~ 347 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------------HLGAILD 347 (503)
T ss_pred eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------------hhhheee
Confidence 9999999987666556779999999999 7888888999998876 55555444321 2246789
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
|.|.++|++|+ +++ .++++|||+-..+..++. ..+......+++-+|+|+.+|.=+-+ +.|.+|+.
T Consensus 348 i~F~~~g~rFi-ssS------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d------N~i~ifs~ 414 (503)
T KOG0282|consen 348 ITFVDEGRRFI-SSS------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD------NYIAIFST 414 (503)
T ss_pred eEEccCCceEe-eec------cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC------ceEEEEec
Confidence 99999999999 565 468999999877766553 33333445799999999999987764 46888874
Q ss_pred CCeeEE--EEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 258 NGLERS--SFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 258 nGl~~~--~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
+-.-.. .-.+.++. .+--..+.|||||.+|++|..++ .+.+|++++-.- -..+..+ +.. +.+.|||..+.
T Consensus 415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG---~v~~wdwkt~kl--~~~lkah-~~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG---KVNFWDWKTTKL--VSKLKAH-DQPCIGVDWHPVEPS 488 (503)
T ss_pred ccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc---cEEEeechhhhh--hhccccC-CcceEEEEecCCCcc
Confidence 321100 00011221 24466899999999999999999 899999986432 1233333 233 88999999988
Q ss_pred eEEEEecCCcEEE
Q 000992 334 QLICWTLDGQITT 346 (1196)
Q Consensus 334 ~L~~~~~~g~~~~ 346 (1196)
.++....+|.+.+
T Consensus 489 kvat~~w~G~Iki 501 (503)
T KOG0282|consen 489 KVATCGWDGLIKI 501 (503)
T ss_pred eeEecccCceeEe
Confidence 7777777777653
No 80
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.8e-15 Score=176.61 Aligned_cols=368 Identities=16% Similarity=0.125 Sum_probs=227.1
Q ss_pred ccccCccc-ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE
Q 000992 14 LELQSKDE-ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV 92 (1196)
Q Consensus 14 ~~~~~~~~-~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~ 92 (1196)
+.+..+.+ .+.++||- ++..||+++-++.|.+||+ .+.+-..+ +. ..++.|++|+.+|.+..+++
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl--~~lk~~~~-------~d----~~gg~IWsiai~p~~~~l~I 127 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL--HTLKQKYN-------ID----SNGGAIWSIAINPENTILAI 127 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec--ccCceeEE-------ec----CCCcceeEEEeCCccceEEe
Confidence 34444333 78899997 8999999999999999999 55543111 11 11678999999999999999
Q ss_pred EECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCc
Q 000992 93 GTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 93 as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
+.+||-+...+...++++ .++...+.|.+++|+|+|..||.|+.||.|++|+ +..+.+.-.......-++
T Consensus 128 gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k------ 201 (691)
T KOG2048|consen 128 GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK------ 201 (691)
T ss_pred ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc------
Confidence 999997777777777775 5676678999999999999999999999998876 222222211111111000
Q ss_pred cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCC
Q 000992 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1196)
Q Consensus 169 f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~ 248 (1196)
....-||++.+=.||. +| ++ +..++|++||...|.+.....-|++.+.+++-.++++++.+++.|+
T Consensus 202 --~~~~iVWSv~~Lrd~t-I~-sg------DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~---- 267 (691)
T KOG2048|consen 202 --REPTIVWSVLFLRDST-IA-SG------DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP---- 267 (691)
T ss_pred --CCceEEEEEEEeecCc-EE-Ee------cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC----
Confidence 0112357777778885 45 23 2468999999999999998888999999999999999999999874
Q ss_pred CCeEEEEeCCCeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCC------------------------------
Q 000992 249 CPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEE------------------------------ 295 (1196)
Q Consensus 249 ~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~------------------------------ 295 (1196)
..+.+.. +|... ++... ..+...|.+++-.++ .|.+|+.|..
T Consensus 268 -~ii~~~~-~~~~~-~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~ 342 (691)
T KOG2048|consen 268 -KIIQYSL-TTNKS-EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP 342 (691)
T ss_pred -ceEEEEe-cCCcc-ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc
Confidence 2344433 22211 12211 223345778887776 6666666640
Q ss_pred ---------cceEEEEEecCC--------EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee----
Q 000992 296 ---------YDSVKICFFSNN--------HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA---- 354 (1196)
Q Consensus 296 ---------~~~V~lW~~~n~--------~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~---- 354 (1196)
.+.+.+|.++.. ...+|-.+.- .+...+.+-+|++.. +++.+-. ...+|....+..
T Consensus 343 ~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~-~~nIs~~aiSPdg~~-Ia~st~~-~~~iy~L~~~~~vk~~ 419 (691)
T KOG2048|consen 343 ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE-KENISCAAISPDGNL-IAISTVS-RTKIYRLQPDPNVKVI 419 (691)
T ss_pred cceEEEEeccccccceeccCcccccccChhhheeeecCC-ccceeeeccCCCCCE-EEEeecc-ceEEEEeccCcceeEE
Confidence 113334443321 1011110000 001134455566543 4443321 122222222100
Q ss_pred ---------cCCCeeEEEEcCCEEEEeeccccC-----CCCCce--eeeec---CCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 355 ---------VMENSTALVIDGSKILVTPLSLSL-----MPPPMY--LFSLK---FPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 355 ---------~~d~~~v~viDg~~l~lt~l~~~~-----vpppm~--~~~l~---~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
-+-..++..+|++.+.+-+..... ...|.. ...+. .-..|..++-||+| +.||+++.+|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG--~yiaa~~t~g 497 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDG--NYIAAISTRG 497 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCC--CEEEEEeccc
Confidence 011234566788877666522110 011111 00010 12468899999999 9999999999
Q ss_pred cEEEEeCCCC
Q 000992 416 CLCVVDLPAP 425 (1196)
Q Consensus 416 ~v~lw~~~~~ 425 (1196)
.|.+|++.+.
T Consensus 498 ~I~v~nl~~~ 507 (691)
T KOG2048|consen 498 QIFVYNLETL 507 (691)
T ss_pred eEEEEEcccc
Confidence 9999999863
No 81
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-17 Score=174.38 Aligned_cols=250 Identities=18% Similarity=0.221 Sum_probs=184.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+-....|--+..|..||.|+.|...... ++ ++.+ +-.+|++| .+.|.-++|.. -|..||+++-||.|
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~--~n-~~s~---ll~~L~Gh----~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVR--NN-GQSK---LLAELTGH----SGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEc--CC-CCce---eeeEecCC----CCCeeEEeecccccCcEeeEeecCceE
Confidence 45556667778999999999977766662 21 1111 22237777 57899999976 79999999999999
Q ss_pred EEEECCCCeEE---EeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDGNATE---VVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~~~~e---~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+||...+++.. ....|+..|++++|-|. |=+||.++.||+|.+.+-+-+ +...+...+..|.-
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~------------g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS------------GGWTTSKIVFAHEI 150 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC------------CCccchhhhhcccc
Confidence 99999887543 44557899999999998 558999999999988753211 00111112335667
Q ss_pred CeEEEEEccC---C-----------ceEEEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcCCC----
Q 000992 175 FKSPISWRGD---G-----------KYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSG---- 234 (1196)
Q Consensus 175 ~v~~isWspD---G-----------~~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsPdG---- 234 (1196)
++.+++|.|- | +.|| +++ -|..|+||.-++| ++..++++|.++++.+||.|.-
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlv-SgG------cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLV-SGG------CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceee-ccC------CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence 8999999997 6 4577 454 4789999998555 4566789999999999999986
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE--eccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFD--INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWY 310 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~--l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wy 310 (1196)
..|||++.|+ +|.+|..+.. ..++. +-.+....++.++||+.|.+||+++.|. .|.+|--+ +++|.
T Consensus 224 s~iAS~SqDg------~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN---kvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 224 STIASCSQDG------TVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN---KVTLWKENVDGKWE 292 (299)
T ss_pred eeeEEecCCC------cEEEEEecCc-cCcccccccccCCcceEEEEEeccccEEEEecCCc---EEEEEEeCCCCcEE
Confidence 3799999975 5999987632 22222 2122235699999999999999999998 89999876 45663
No 82
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.77 E-value=2.4e-15 Score=169.92 Aligned_cols=393 Identities=15% Similarity=0.153 Sum_probs=248.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
-+....|-|-...|.+....+.++.|++ ..+.. .+-. ++.+-+. ...|.++.|.++|+.+ +|-++|+|.|
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~--~~~~l-~k~~----~~fek~e--kk~Vl~v~F~engdvi-TgDS~G~i~I 271 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTL--RGGSL-VKRQ----GIFEKRE--KKFVLCVTFLENGDVI-TGDSGGNILI 271 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEc--cCCce-EEEe----ecccccc--ceEEEEEEEcCCCCEE-eecCCceEEE
Confidence 4566677766655666555556999998 33322 1111 1111111 2579999999999864 7899999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc-------Cc--c-ccc-----
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-------EG--F-DVH----- 165 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~-------~~--~-~Vs----- 165 (1196)
|+..+.++. .+-.|++||.+++---||.+|- ++.|..|..|+.+...+.++.+...- +. . .|.
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 999987763 3348999999999999998876 99999999999777777776654432 11 0 110
Q ss_pred ------cCccc----cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 166 ------EPELS----SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 166 ------~tqf~----~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
+..|. +|.+..+.++-.|+...|+| ++ .|+++++|+ .-++..+-. ......++.|.|.|
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T-~g------qdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg- 419 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLT-CG------QDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG- 419 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheee-cc------CcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-
Confidence 22222 78889999999999999995 54 479999999 344554432 45567899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-CEEEEEEE
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NHWYLKYE 314 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-~~wylkq~ 314 (1196)
.||.|..-+ ...+.+.. .+.-.+++.. ...+..++|||||.+||+++.|. .|.|+.++. ..-|-+-
T Consensus 420 ~va~Gt~~G------~w~V~d~e--~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~---~iyiy~Vs~~g~~y~r~- 486 (626)
T KOG2106|consen 420 VVAVGTATG------RWFVLDTE--TQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN---HIYIYRVSANGRKYSRV- 486 (626)
T ss_pred eEEEeeccc------eEEEEecc--cceeEEEEec-CCceEEEEEcCCCCEEEEecCCC---eEEEEEECCCCcEEEEe-
Confidence 888876532 23333322 1222334433 45799999999999999999999 899999874 3323221
Q ss_pred EEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee--cCC
Q 000992 315 IRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL--KFP 391 (1196)
Q Consensus 315 l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l--~~~ 391 (1196)
-..+. +. +.+.||+|+.. |+.- +|.+.+. -|........ ..+ +.+++..-. .. +-+... .+.
T Consensus 487 ~k~~g-s~ithLDwS~Ds~~-~~~~--S~d~eiL--yW~~~~~~~~-ts~---kDvkW~t~~-c~----lGF~v~g~s~~ 551 (626)
T KOG2106|consen 487 GKCSG-SPITHLDWSSDSQF-LVSN--SGDYEIL--YWKPSECKQI-TSV---KDVKWATYT-CT----LGFEVFGGSDG 551 (626)
T ss_pred eeecC-ceeEEeeecCCCce-EEec--cCceEEE--EEccccCccc-cee---cceeeeeeE-EE----EEEEEecccCC
Confidence 11222 33 88999999875 3333 3444433 3422211111 011 111111100 00 000111 134
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCC
Q 000992 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRH 471 (1196)
Q Consensus 392 ~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~ 471 (1196)
..|+.++-|.+. +++|++...|+|+||..+-.... ..-++. ..+..-|.+++|+.++..+.+...+ .
T Consensus 552 t~i~a~~rs~~~--~~lA~gdd~g~v~lf~yPc~s~r--A~~he~-------~ghs~~vt~V~Fl~~d~~li~tg~D--~ 618 (626)
T KOG2106|consen 552 TDINAVARSHCE--KLLASGDDFGKVHLFSYPCSSPR--APSHEY-------GGHSSHVTNVAFLCKDSHLISTGKD--T 618 (626)
T ss_pred chHHHhhhhhhh--hhhhccccCceEEEEccccCCCc--ccceee-------ccccceeEEEEEeeCCceEEecCCC--c
Confidence 557788888888 89999999999999998632111 111111 2455679999999888766554432 5
Q ss_pred ceEEEE
Q 000992 472 SNYFRG 477 (1196)
Q Consensus 472 ~~~~~~ 477 (1196)
++..|.
T Consensus 619 Si~qW~ 624 (626)
T KOG2106|consen 619 SIMQWR 624 (626)
T ss_pred eEEEEE
Confidence 555554
No 83
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=1.5e-15 Score=171.67 Aligned_cols=256 Identities=9% Similarity=0.026 Sum_probs=162.6
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCCcEEEEECCCCeEE-
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLLLLHSVDGNATE- 110 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as~dG~I~lw~~~~~~~e- 110 (1196)
+.+++.+.++.++.||. .+++. +.+ +.. ...+.+++|+|||+.+ ++++.++.|++||..+++..
T Consensus 2 ~~~~s~~~d~~v~~~d~--~t~~~---~~~----~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDT--ATLEV---TRT----FPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG 67 (300)
T ss_pred cEEEEecCCCEEEEEEC--CCCce---EEE----EEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 34556677889999998 44432 111 111 2346789999999977 56678899999999886543
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.+.. ...+..++|+|||+.|++++ .+++|.+|+.. ...+..... ......++|+|||+++
T Consensus 68 ~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 68 TLPS-GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------------GVEPEGMAVSPDGKIV 129 (300)
T ss_pred eccC-CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------------CCCcceEEECCCCCEE
Confidence 2322 23467899999999887664 57899888632 222221111 1124679999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEe
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDI 267 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l 267 (1196)
+ +++. ....+.+||..++++..... .......++|+|+|++++.++.. ...|.+|+... .....+.+
T Consensus 130 ~-~~~~-----~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 130 V-NTSE-----TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEI-----GGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred E-EEec-----CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCC-----CCEEEEEEcCcceeeeeeee
Confidence 9 5542 23568889997777765443 23344789999999988655432 24699999653 32232222
Q ss_pred ccC----CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 268 NEQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 268 ~~~----~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
..+ .......++|||||+.+.++..+. +.|.+|+..+++- ...+. .......+.|+|++.. |++.
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~g~~-l~~~ 266 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEV--LDYLL-VGQRVWQLAFTPDEKY-LLTT 266 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcE--EEEEE-eCCCcceEEECCCCCE-EEEE
Confidence 211 111245799999999866654322 2699999987542 22222 1223377899998875 4443
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=178.14 Aligned_cols=281 Identities=12% Similarity=0.131 Sum_probs=205.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+..|.||++.|.++|-|+.|-.|+. .+++.... |.... ...|. -.+.|.++.||.|+++||+|+.||.|+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny--~~GKlrKD---LkYQA-qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNY--TTGKLRKD---LKYQA-QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehh--ccchhhhh---hhhhh-hcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 5677889999999999999999999998 66654211 11110 01111 147899999999999999999999999
Q ss_pred EEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+|...+|.+- .-..|..||+|++||.|+..+.+++-|.+|++-. ..++..+. .|++|...|..
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHG----lKSGK~LK-----------EfrGHsSyvn~ 353 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHG----LKSGKCLK-----------EFRGHSSYVNE 353 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEec----cccchhHH-----------HhcCccccccc
Confidence 9999998763 3336889999999999999999999999997632 12222322 35688888999
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--CCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEEE
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|++||.++. +++ .|++||||+..++++++++.+ .+..+.++-.=|.. ..+..+.+ .++|.+.
T Consensus 354 a~ft~dG~~ii-saS------sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr------sntv~im 420 (508)
T KOG0275|consen 354 ATFTDDGHHII-SAS------SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR------SNTVYIM 420 (508)
T ss_pred eEEcCCCCeEE-Eec------CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC------CCeEEEE
Confidence 99999999999 454 379999999999999999875 44567777766654 35555555 3578888
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceE
Q 000992 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1196)
+..|.....|.--....+.-.+.+.||-|+.+-..+.|+ .+.-+.+..+. |...+..+..++..+.-||-.+. |
T Consensus 421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~---vlYCF~~~sG~--LE~tl~VhEkdvIGl~HHPHqNl-l 494 (508)
T KOG0275|consen 421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG---VLYCFSVLSGK--LERTLPVHEKDVIGLTHHPHQNL-L 494 (508)
T ss_pred eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc---EEEEEEeecCc--eeeeeecccccccccccCcccch-h
Confidence 888877766643222234566778999999999999998 66666665543 44566666555555666765443 4
Q ss_pred EEEecCC
Q 000992 336 ICWTLDG 342 (1196)
Q Consensus 336 ~~~~~~g 342 (1196)
+..+.||
T Consensus 495 AsYsEDg 501 (508)
T KOG0275|consen 495 ASYSEDG 501 (508)
T ss_pred hhhcccc
Confidence 4444444
No 85
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.3e-17 Score=172.00 Aligned_cols=254 Identities=18% Similarity=0.234 Sum_probs=184.0
Q ss_pred eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc--CCceEEE
Q 000992 113 GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFAT 190 (1196)
Q Consensus 113 g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~lAs 190 (1196)
..|++-|..+...-=|+.||+++.|++|+++...-+.- ...+.. ..+|.+.++.++|-- -|.+||
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~-----------L~Gh~GPVwqv~wahPk~G~iLA- 74 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAE-----------LTGHSGPVWKVAWAHPKFGTILA- 74 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeE-----------ecCCCCCeeEEeecccccCcEee-
Confidence 34677888888888899999999999998875322111 011111 227788899999987 899999
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEe--ccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeC--C-CeeEE
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYER--N-GLERS 263 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~--n-Gl~~~ 263 (1196)
+++. |++|-||.-++|+-.... ..|++.+++|+|.|. |-+||+++.|+ +|.+++- + |....
T Consensus 75 ScsY------DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG------~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 75 SCSY------DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG------KVSVLTYDSSGGWTTS 142 (299)
T ss_pred Eeec------CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC------cEEEEEEcCCCCccch
Confidence 4553 689999999777544433 458889999999997 56899999875 4666653 3 22211
Q ss_pred EEEeccCCCCcEEEEEEccC---C-----------CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc
Q 000992 264 SFDINEQIDSTVELLKWNCM---S-----------DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpD---g-----------~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
.+..-|+..|++++|.|- | +.||+++.|. .|+||...+..|.+-+.+..|.+-...++|.|
T Consensus 143 --ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn---~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 143 --KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN---LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred --hhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc---ceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 112234567999999997 5 5699999998 99999999999988777877766668899999
Q ss_pred CCCc---eEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCC
Q 000992 330 TKPL---QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN 406 (1196)
Q Consensus 330 ~~~~---~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~ 406 (1196)
..++ +++..++||++. +|... .++..-+.|.+. +++..++.|+||+.| +
T Consensus 218 ~~gl~~s~iAS~SqDg~vi----Iwt~~---------~e~e~wk~tll~-------------~f~~~~w~vSWS~sG--n 269 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVI----IWTKD---------EEYEPWKKTLLE-------------EFPDVVWRVSWSLSG--N 269 (299)
T ss_pred ccCCCceeeEEecCCCcEE----EEEec---------CccCcccccccc-------------cCCcceEEEEEeccc--c
Confidence 8753 566677777764 34332 011111111110 267889999999999 9
Q ss_pred EEEEEECCCcEEEEeCCC
Q 000992 407 CLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 407 ~lAs~~~dg~v~lw~~~~ 424 (1196)
.||+...|+.|.+|.-+.
T Consensus 270 ~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 270 ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEEecCCcEEEEEEeCC
Confidence 999999999999998764
No 86
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.75 E-value=4e-15 Score=176.80 Aligned_cols=384 Identities=13% Similarity=0.152 Sum_probs=245.8
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEe
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV 112 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~v 112 (1196)
+.|..++..+.+..|++ .+++. |.+ +.++ .+.|+++.=+|--+.+|+|..+|+|++.|+..+++-..
T Consensus 173 NKIvvGs~~G~lql~Nv--rt~K~---v~~----f~~~----~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNV--RTGKV---VYT----FQEF----FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred eeEEEeecCCcEEEEEe--ccCcE---EEE----eccc----ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 55777788888999999 55544 222 3333 36899999999999999999999999999988766432
Q ss_pred eeec-CcEEEEEECCCCCE-EEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 113 GRVE-GGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 113 g~~~-~~I~~~awSPDg~~-LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
=.|+ +.|++++|.-||+- ||+++..|.+-+|+.+...+..+... .|++++....|-|.-..+.
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n--------------ah~~sv~~~~fl~~epVl~- 304 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN--------------AHYGSVTGATFLPGEPVLV- 304 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec--------------cccCCcccceecCCCceEe-
Confidence 2344 88999999999985 56666779999997654443322211 3456667777777666666
Q ss_pred eeccccccCCCCEEEEE--ECCCC--cEEEEeccCCCceeEEEEc-CCCCeEEEEecCCC----------------C---
Q 000992 191 LSEFCNSSKLHKRLKVW--ERDSG--TLQASSELKAFMGAVLEWM-PSGANIAAVYDRKS----------------E--- 246 (1196)
Q Consensus 191 vss~d~~~~~d~~irVW--d~~~G--~l~~~~e~~~~~v~slaws-PdG~~IAs~s~d~~----------------~--- 246 (1196)
.++ .|..+|+| |..+| +++..-.+|..+-.+|.|- .+|..|-+++.|.+ .
T Consensus 305 ta~------~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 305 TAG------ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred ecc------CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 344 34556655 43344 4455556677766777776 66777777665531 0
Q ss_pred ----------------------------------------CCCCeEEEEeCCCeeEEEEEecc----CCCCcEEEEEEcc
Q 000992 247 ----------------------------------------NKCPSIVFYERNGLERSSFDINE----QIDSTVELLKWNC 282 (1196)
Q Consensus 247 ----------------------------------------~~~~~V~~~e~nGl~~~~f~l~~----~~~~~V~~laWSp 282 (1196)
..+....-|+-...+.|+|.|.. +....+.+++-|+
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 00122333443333445666652 1345799999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE---EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEee------
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR---YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT------ 353 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~---~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~------ 353 (1196)
-|....+|++.+ +|-+++++.+-. ...+. .+....+.++-+..+.. ++..+.+|.+..++|.-.+
T Consensus 459 CGNF~~IG~S~G---~Id~fNmQSGi~--r~sf~~~~ah~~~V~gla~D~~n~~-~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 459 CGNFVFIGYSKG---TIDRFNMQSGIH--RKSFGDSPAHKGEVTGLAVDGTNRL-LVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred cCceEEEeccCC---eEEEEEcccCee--ecccccCccccCceeEEEecCCCce-EEEccCcceEEEEecCCcceeeeec
Confidence 999999999999 999999986531 11120 11122255655554432 4444456766655543211
Q ss_pred -ecC--------CCe-eEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 354 -AVM--------ENS-TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 354 -~~~--------d~~-~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
..+ ..+ .+.+.|.-.|.+.+.....| .+.+ +|.+.|++.+||||| +.|++++-|++|++||+
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-----vR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-----VREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWDL 605 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-----hHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEec
Confidence 100 011 12223444444444321111 1444 489999999999999 99999999999999999
Q ss_pred CCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEE
Q 000992 423 PAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1196)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1196)
.+..++ . .+- -.+.+.++.|+|+|.+||+.+-+. +.+++|.
T Consensus 606 pt~~lI---D--~~~--------vd~~~~sls~SPngD~LAT~Hvd~-~gIylWs 646 (910)
T KOG1539|consen 606 PTGTLI---D--GLL--------VDSPCTSLSFSPNGDFLATVHVDQ-NGIYLWS 646 (910)
T ss_pred cCccee---e--eEe--------cCCcceeeEECCCCCEEEEEEecC-ceEEEEE
Confidence 875333 1 111 013678999999999999988753 4566774
No 87
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.74 E-value=4.6e-14 Score=181.54 Aligned_cols=365 Identities=17% Similarity=0.170 Sum_probs=207.4
Q ss_pred CCEEEEEEccCCCEEEEEECCCcE----EEEECC-CCeEEEeee--------ecCcEEEEEECCCCCEEEEEeCCceEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLL----LLHSVD-GNATEVVGR--------VEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I----~lw~~~-~~~~e~vg~--------~~~~I~~~awSPDg~~LA~~s~d~tV~l 142 (1196)
..+...+|.++.+.+.++.....+ .+.... +...+.+-. -.+.|.++.+=+|.+.|..+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 357788888888777665554443 221111 111222211 1356999999999999999999999987
Q ss_pred EeccCce---eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE---
Q 000992 143 MTHDWDL---LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--- 216 (1196)
Q Consensus 143 ~~~~~d~---~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~--- 216 (1196)
...+-++ ..|.-. .-+.+|.+.+||||++.|| +.+ +++++-+-++ +-+.++
T Consensus 102 ~~~~~~~~~~~~E~VG---------------~vd~GI~a~~WSPD~Ella-~vT------~~~~l~~mt~-~fd~i~E~~ 158 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVG---------------SVDSGILAASWSPDEELLA-LVT------GEGNLLLMTR-DFDPISEVP 158 (928)
T ss_pred EEccCCCCCceeEEEE---------------EEcCcEEEEEECCCcCEEE-EEe------CCCEEEEEec-cceEEEEee
Confidence 6322111 111111 1246899999999999999 665 2344444332 111100
Q ss_pred -----------E----------e-------------cc-----------CCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 217 -----------S----------S-------------EL-----------KAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 217 -----------~----------~-------------e~-----------~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
. + ++ .+..-..|+|+.||+++|+.+-+...+.+..
T Consensus 159 l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~ 238 (928)
T PF04762_consen 159 LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRV 238 (928)
T ss_pred cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence 0 0 00 1223468999999999999987443223578
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-c-EEEEEcc
Q 000992 252 IVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHP 329 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp 329 (1196)
+++|+|+|..+..- .+-.+--..|+|-|.|.++|+.-.-...+.|-+|..+..+. ---++.+.+.. . ..+.|++
T Consensus 239 iRVy~ReG~L~stS---E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh-geF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 239 IRVYSREGELQSTS---EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH-GEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EEEECCCceEEecc---ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-eeEecCCCCCCceeeEEEECC
Confidence 99999999765421 12222334799999999999988744445788888776432 11223332222 2 7788999
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC--CCCEEEEEEecCCCCCE
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF--PTAVTEMAFYSKSSKNC 407 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~--~~~V~~Vafspdg~~~~ 407 (1196)
++.. |+++..+. +. .|.+. + - =|=++ +.+.+ ...+..+.|+|... ..
T Consensus 315 ds~i-LAv~~~~~-vq----LWt~~--N--------Y----HWYLK----------qei~~~~~~~~~~~~Wdpe~p-~~ 363 (928)
T PF04762_consen 315 DSEI-LAVWLEDR-VQ----LWTRS--N--------Y----HWYLK----------QEIRFSSSESVNFVKWDPEKP-LR 363 (928)
T ss_pred CCCE-EEEEecCC-ce----EEEee--C--------C----EEEEE----------EEEEccCCCCCCceEECCCCC-CE
Confidence 8865 66665432 21 22221 0 0 01111 11222 22344588999764 77
Q ss_pred EEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC-eEEEEEecCCCCceEEEEeeccCCccc
Q 000992 408 LAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGATLNEDGLL 486 (1196)
Q Consensus 408 lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~~~~~~~~~ 486 (1196)
|.+++.+|.+..+++.-.. ..|.. -.|++ -.+|+ -++ +++.+-.+..
T Consensus 364 L~v~t~~g~~~~~~~~~~v----~~s~~-------------------~~~~D~g~vaV-IDG--~~lllTpf~~------ 411 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDV----SRSPG-------------------SSPNDNGTVAV-IDG--NKLLLTPFRR------ 411 (928)
T ss_pred EEEEecCCcEEEEEEEEEE----EecCC-------------------CCccCceEEEE-EeC--CeEEEecccc------
Confidence 8888888888777663110 00100 00111 11221 222 2333332211
Q ss_pred cchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 487 GFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
..+|-+++ ...+.++++|..+++++ ++..+++.+.||++..|..
T Consensus 412 -------------a~VPPPMs--------~~~l~~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 412 -------------AVVPPPMS--------SYELELPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred -------------cCCCchHh--------ceEEcCCCCcEEEEEeC-CCCeEEEEECCCCEEEEEe
Confidence 12333222 23466788999999887 6666999999999998863
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.73 E-value=7e-17 Score=186.97 Aligned_cols=254 Identities=17% Similarity=0.225 Sum_probs=205.7
Q ss_pred HHHHHHHHhhcChHHHHHHHHhcc----ChhHHHHHHHHh--cCCcchh--hHHHHHHhcCChhhhcccHHHHhhCHHHH
Q 000992 879 EEALKHLLWLADSEAVYEAALGLY----DLNLAAIVALNS--QRDPKEF--LPYLQELESMPPLLMRYTIDLRLQRFENA 950 (1196)
Q Consensus 879 ~~al~~l~~L~d~~~Ly~~ALg~y----D~~lal~vAq~s--q~DpkeY--lpfL~~L~~l~~~~~r~~Id~~L~ry~~A 950 (1196)
++-|+|+.--.=-.+||+.|=.+| ||+-|+.-.+|- ++..-|. +.|-.++-++|+.|..... +.|+|+.|
T Consensus 648 e~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~--~~~q~daa 725 (1636)
T KOG3616|consen 648 EEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE--QIGQLDAA 725 (1636)
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH--HHHhHHHH
Confidence 455666653333467888886666 455544333321 1111111 4566667777777776654 68999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHH
Q 000992 951 LKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR 1027 (1196)
Q Consensus 951 l~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~ 1027 (1196)
+.||+++.. .-+|+|..... +.|++|+.+. .|.+.....+-..|+|+.++++|+.|..+|..++.+..|+.||.
T Consensus 726 inhfiea~~--~~kaieaai~a-kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~ 802 (1636)
T KOG3616|consen 726 INHFIEANC--LIKAIEAAIGA-KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYG 802 (1636)
T ss_pred HHHHHHhhh--HHHHHHHHhhh-hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHh
Confidence 999999976 79999999999 9999999998 56666677888899999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000992 1028 ASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1196)
Q Consensus 1028 ~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~d 1107 (1196)
++|.|..|+.++.+.. .++....++..-|+.|.+.|+|.||.++|.. .|.++.||.||-+.+..++.+||+.+|...-
T Consensus 803 k~~kw~da~kla~e~~-~~e~t~~~yiakaedldehgkf~eaeqlyit-i~~p~~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH-GPEATISLYIAKAEDLDEHGKFAEAEQLYIT-IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred ccccHHHHHHHHHHhc-CchhHHHHHHHhHHhHHhhcchhhhhheeEE-ccCchHHHHHHHhhCcchHHHHHHHHhChhh
Confidence 9999999999999864 7788888999999999999999999999999 9999999999999999999999999998555
Q ss_pred hHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1108 LITK---VKHAS-----LECASSLIGEYKEGLEKVGKYLT 1139 (1196)
Q Consensus 1108 L~e~---v~~~l-----~e~~~~~~e~l~~~~~~~~~~~~ 1139 (1196)
+.++ +...+ +.+++.+.-...+++..++.|+.
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~ 920 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKA 920 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhh
Confidence 5555 33333 45677788889999999999975
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=9e-16 Score=172.43 Aligned_cols=301 Identities=14% Similarity=0.118 Sum_probs=197.3
Q ss_pred EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec----ccccCcc-ccccCcc--ccCCCCeEEEEE
Q 000992 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL----EELAEGF-DVHEPEL--SSSFSFKSPISW 181 (1196)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l----~~~~~~~-~Vs~tqf--~~~~~~v~~isW 181 (1196)
+..++.|.-.|.+++.|||++.+.+++.+++|.-| +..++... ....-.+ +-.+.++ ..|...+.+++-
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw----~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKW----DVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeee----ehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 55677788999999999999999999999999655 44333321 1111000 1112222 378888999999
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1196)
|+||+||| .+. .++.|.||+.++++.++++.+|.+.|.+++|+-.-+.+-|++.|. .|++|..+-+.
T Consensus 211 S~Dgkyla-tgg------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr------svkvw~~~~~s 277 (479)
T KOG0299|consen 211 SSDGKYLA-TGG------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR------SVKVWSIDQLS 277 (479)
T ss_pred cCCCcEEE-ecC------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC------ceEEEehhHhH
Confidence 99999999 565 468999999999999999999999999999999888888888864 59999865322
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC--cEEEEEccCCCceEEEEe
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~--~~~v~Wsp~~~~~L~~~~ 339 (1196)
.-+ ++.+ |+..|.+|.-..-++.+-+++.|+ |++||.+..-. | +.|.+.. .-++++=.+. .+.+++
T Consensus 278 ~ve-tlyG-Hqd~v~~IdaL~reR~vtVGgrDr---T~rlwKi~ees----q-lifrg~~~sidcv~~In~~--HfvsGS 345 (479)
T KOG0299|consen 278 YVE-TLYG-HQDGVLGIDALSRERCVTVGGRDR---TVRLWKIPEES----Q-LIFRGGEGSIDCVAFINDE--HFVSGS 345 (479)
T ss_pred HHH-HHhC-CccceeeechhcccceEEeccccc---eeEEEeccccc----e-eeeeCCCCCeeeEEEeccc--ceeecc
Confidence 111 1223 356799999999999999999999 99999985421 2 2222211 1233333222 133344
Q ss_pred cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000992 340 LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1196)
Q Consensus 340 ~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~l 419 (1196)
.+|.+. .|++. --+.|-+.++.....|-+ ..+.++.+|++|+-.|.. +++|+++.+|.|+|
T Consensus 346 dnG~Ia----LWs~~----------KKkplf~~~~AHgv~~~~---~~~~~~~Witsla~i~~s--dL~asGS~~G~vrL 406 (479)
T KOG0299|consen 346 DNGSIA----LWSLL----------KKKPLFTSRLAHGVIPEL---DPVNGNFWITSLAVIPGS--DLLASGSWSGCVRL 406 (479)
T ss_pred CCceEE----Eeeec----------ccCceeEeeccccccCCc---cccccccceeeeEecccC--ceEEecCCCCceEE
Confidence 444332 22221 011111112222222221 123345699999999998 89999999999999
Q ss_pred EeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEe
Q 000992 420 VDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSH 466 (1196)
Q Consensus 420 w~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~ 466 (1196)
|........ +.+..+++ -.+.|..++|+++|+.|.++.
T Consensus 407 W~i~~g~r~-------i~~l~~ls--~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 407 WKIEDGLRA-------INLLYSLS--LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEecCCccc-------cceeeecc--cccEEEEEEEccCCCEEEEec
Confidence 999753111 11111111 124789999999999666554
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.73 E-value=2.3e-16 Score=168.68 Aligned_cols=281 Identities=11% Similarity=0.059 Sum_probs=192.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC------------C-------eEEEeeeecCcEEEEEECCCCCEEEEEeC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG------------N-------ATEVVGRVEGGVRFISPSPDGDLLGVTTG 136 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~------------~-------~~e~vg~~~~~I~~~awSPDg~~LA~~s~ 136 (1196)
+.+.+-+|||||..+|+|+.|-.|+|.|.+- + .+.++=.|-+.|+++.|.|-...|++++.
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr 192 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR 192 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC
Confidence 5688999999999999999999999999851 0 12333336688999999999999999999
Q ss_pred CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE
Q 000992 137 FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 137 d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~ 216 (1196)
|++|++++-. ++...... +.+ .....+.+|+|.|-|.|++ +++ ...++|+||.++-++..
T Consensus 193 D~tvKlFDfs-K~saKrA~------K~~------qd~~~vrsiSfHPsGefll-vgT------dHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 193 DNTVKLFDFS-KTSAKRAF------KVF------QDTEPVRSISFHPSGEFLL-VGT------DHPTLRLYDVNTYQCFV 252 (430)
T ss_pred CCeEEEEecc-cHHHHHHH------HHh------hccceeeeEeecCCCceEE-Eec------CCCceeEEeccceeEee
Confidence 9999886421 11111111 111 1123579999999999999 886 45799999998877766
Q ss_pred Eec---cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEec-cCCCCcEEEEEEccCCCeeEEEE
Q 000992 217 SSE---LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDIN-EQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 217 ~~e---~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
... .|.+.|.++.+||.|++-+++|.|+ .|++|+--..+ .. ++. .|+...|.+..|..||+++.+.+
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG------~IklwDGVS~rCv~--t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDG------AIKLWDGVSNRCVR--TIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCC------cEEeeccccHHHHH--HHHhhcCCceeeeEEEccCCeEEeecC
Confidence 554 4778899999999999999999874 69999831111 00 111 34456799999999999999999
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCc-----EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC-CeeEEEEc
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-----IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME-NSTALVID 365 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-----~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d-~~~v~viD 365 (1196)
.|. +|+||.+.+... .++.......+ +...|.....+. ..|+. ...+..||
T Consensus 325 ~DS---~vkLWEi~t~R~--l~~YtGAg~tgrq~~rtqAvFNhtEdyV------------------l~pDEas~slcsWd 381 (430)
T KOG0640|consen 325 KDS---TVKLWEISTGRM--LKEYTGAGTTGRQKHRTQAVFNHTEDYV------------------LFPDEASNSLCSWD 381 (430)
T ss_pred Ccc---eeeeeeecCCce--EEEEecCCcccchhhhhhhhhcCccceE------------------EccccccCceeecc
Confidence 999 999999988653 12222211000 111111111110 00111 11122233
Q ss_pred CC---EEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 366 GS---KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 366 g~---~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.. ++.+ ..+.|.+.|..+.-||.+ .-+.+++.|...++|-..
T Consensus 382 aRtadr~~l--------------~slgHn~a~R~i~HSP~~--p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 382 ARTADRVAL--------------LSLGHNGAVRWIVHSPVE--PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccchhhhhh--------------cccCCCCCceEEEeCCCC--Cceeeecccceeeeeeec
Confidence 22 2222 335688999999999998 789999999999999753
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=8.6e-16 Score=173.81 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=201.7
Q ss_pred CCEEEEEEccCCCE-EEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEA-LIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~-La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
+.|.+++|||.... +|++ .+-.+.||+..+... .....++..|.++.|-.||++||.|...|.|+++ |..+..
T Consensus 27 ~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vf----D~k~r~ 101 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVF----DMKSRV 101 (487)
T ss_pred CcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEe----ccccHH
Confidence 68999999996543 4444 455799999887543 3566788999999999999999999999999874 411111
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
.+. ++.+|...+..+.|+|++.... +++ +.|+++++||..++..+....+|...|.+.+|+|-
T Consensus 102 iLR-----------~~~ah~apv~~~~f~~~d~t~l-~s~-----sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 102 ILR-----------QLYAHQAPVHVTKFSPQDNTML-VSG-----SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA 164 (487)
T ss_pred HHH-----------HHhhccCceeEEEecccCCeEE-Eec-----CCCceEEEEEcCCcEEEEEecCCcceeEeeccccC
Confidence 222 3446777889999999888777 444 25799999999888776678899999999999997
Q ss_pred C-CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 G-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G-~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
. .+++||+.| +.|++|+.--.......+ .+...|.++.+=|.|+++|+++... |++||+..+.-.+.
T Consensus 165 ~~hivvtGsYD------g~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgGn~----vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 165 NDHIVVTGSYD------GKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGGNS----VKVWDLTTGGQLLT 232 (487)
T ss_pred CCeEEEecCCC------ceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCCCe----EEEEEecCCceehh
Confidence 4 588899886 579999954322122222 2456799999999999999998775 99999875432111
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCC
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT 392 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~ 392 (1196)
...-|....+++....++ .+|..+..||.+.+++.. + -+.+ +....++
T Consensus 233 -~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t------~--------~Kvv----------------~s~~~~~ 280 (487)
T KOG0310|consen 233 -SMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTT------N--------YKVV----------------HSWKYPG 280 (487)
T ss_pred -hhhcccceEEEEEeecCC-ceEeecccccceEEEEcc------c--------eEEE----------------Eeeeccc
Confidence 111133344788887766 457777777777654411 0 0011 3345678
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 393 ~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
+|.+++.|||+ +.+++|.+||.+.+=+.
T Consensus 281 pvLsiavs~dd--~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 281 PVLSIAVSPDD--QTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceeeEEecCCC--ceEEEecccceeeeehh
Confidence 99999999999 89999999998876543
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.72 E-value=3.1e-15 Score=157.97 Aligned_cols=295 Identities=13% Similarity=0.028 Sum_probs=198.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEEC-CCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSV-DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~-~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~ 153 (1196)
-.++-|.|..+|..|-+++.|.++-+|-. ++.++-....|.+.|+|+..+-|.+.|++++.|.++++|+ ..+..+...
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 46899999999999999999999999866 6656656666799999999999999999999999998875 333433332
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-------cEEEEeccCCCcee
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-------TLQASSELKAFMGA 226 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-------~l~~~~e~~~~~v~ 226 (1196)
.. ...|..+.|+++|.+++ .++.+.. +..+.|-+++.... +.......++..+.
T Consensus 91 k~-----------------~~~Vk~~~F~~~gn~~l-~~tD~~m-g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 91 KT-----------------NSPVKRVDFSFGGNLIL-ASTDKQM-GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ec-----------------CCeeEEEeeccCCcEEE-EEehhhc-CcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 21 13568999999999988 5543222 34567888887522 22222233456678
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..-|+|-|+.|.+|..+ ..|..|+ +||+..-+ -...+...|++|.+|||.++..+++.|. +-+|||..
T Consensus 152 ~a~Wg~l~~~ii~Ghe~------G~is~~da~~g~~~v~--s~~~h~~~Ind~q~s~d~T~FiT~s~Dt---takl~D~~ 220 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHED------GSISIYDARTGKELVD--SDEEHSSKINDLQFSRDRTYFITGSKDT---TAKLVDVR 220 (327)
T ss_pred eeeecccCCEEEEecCC------CcEEEEEcccCceeee--chhhhccccccccccCCcceEEecccCc---cceeeecc
Confidence 88999999999999875 4699999 56644221 0112345799999999999999999999 99999998
Q ss_pred CCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe-eccccCCCCCc
Q 000992 306 NNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT-PLSLSLMPPPM 383 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt-~l~~~~vpppm 383 (1196)
.... +| ++. ...+ .+.+.+|-... +....|+- ..+.. ..+++.=+.- .|-...... -
T Consensus 221 tl~v-~K-ty~--te~PvN~aaisP~~d~---VilgGGqe-A~dVT------------TT~~r~GKFEArFyh~i~eE-E 279 (327)
T KOG0643|consen 221 TLEV-LK-TYT--TERPVNTAAISPLLDH---VILGGGQE-AMDVT------------TTSTRAGKFEARFYHLIFEE-E 279 (327)
T ss_pred ceee-EE-Eee--ecccccceecccccce---EEecCCce-eeeee------------eecccccchhhhHHHHHHHH-H
Confidence 7543 11 221 1223 66778886654 22223331 11111 1111100000 000000000 0
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
..+.-+|=++|++|||+|+| +..++++.||.|++..++
T Consensus 280 igrvkGHFGPINsvAfhPdG--ksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDG--KSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred hccccccccCcceeEECCCC--cccccCCCCceEEEEEec
Confidence 00111367899999999999 999999999999998765
No 93
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.9e-16 Score=162.32 Aligned_cols=281 Identities=12% Similarity=0.098 Sum_probs=194.4
Q ss_pred CEEEEEEccC-CCEEEEE-------ECCCcEEEEECC-CCeEEEeee--ecCcEEEEEECCCCC-EEEEEeCCceEEEEe
Q 000992 77 SITAFDYLME-KEALIVG-------TSSGLLLLHSVD-GNATEVVGR--VEGGVRFISPSPDGD-LLGVTTGFGQILVMT 144 (1196)
Q Consensus 77 ~v~~v~~spd-~~~La~a-------s~dG~I~lw~~~-~~~~e~vg~--~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~ 144 (1196)
.=.++.|||= -..||+| ..+|.+.|-++. .+.+..+-+ ..+++..++||+.-+ .++++++||++++|+
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 3457888882 2344444 257899999885 433433332 258899999999855 567779999999876
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
. +..+.+++ .|+.|...|.++.|++- ++.|. +|| .|++||+|+..-++.+.|+.+|..
T Consensus 90 ~---~~~s~Pi~-----------~~kEH~~EV~Svdwn~~~r~~~l-tsS------WD~TiKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 90 L---TMPSKPIH-----------KFKEHKREVYSVDWNTVRRRIFL-TSS------WDGTIKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred c---CCCCcchh-----------HHHhhhhheEEeccccccceeEE-eec------cCCceEeecCCCCcceEeecCCcc
Confidence 1 22222332 35678888999999984 45566 455 469999999988899999999999
Q ss_pred ceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceE
Q 000992 224 MGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSV 299 (1196)
Q Consensus 224 ~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V 299 (1196)
.|...+||| .++++|++|.|. ..+||+.. |... .++.| ...|.+..||. |-.+||+++.|. .|
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~------~l~lwdvr~~gk~~---~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~---~v 215 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDG------TLRLWDVRSPGKFM---SIEAH-NSEILCCDWSKYNHNVLATGGVDN---LV 215 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCc------eEEEEEecCCCcee---EEEec-cceeEeecccccCCcEEEecCCCc---eE
Confidence 999999999 578999999874 69999832 3221 23333 35799999996 667899999999 99
Q ss_pred EEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 300 ~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
+.||+.|+.-- ..++..|.-.+..++|||-....|+..+-|- ++++|++...
T Consensus 216 r~wDir~~r~p-l~eL~gh~~AVRkvk~Sph~~~lLaSasYDm-------------------------T~riw~~~~~-- 267 (311)
T KOG0277|consen 216 RGWDIRNLRTP-LFELNGHGLAVRKVKFSPHHASLLASASYDM-------------------------TVRIWDPERQ-- 267 (311)
T ss_pred EEEehhhcccc-ceeecCCceEEEEEecCcchhhHhhhccccc-------------------------eEEecccccc--
Confidence 99999986521 1234333222377889997766555544322 2233322110
Q ss_pred CCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 380 PPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 380 pppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
--+..+. .|.+-|..+.||+-.+ ..+|+.+.|+.+.+|+.
T Consensus 268 --ds~~e~~~~HtEFv~g~Dws~~~~-~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 --DSAIETVDHHTEFVCGLDWSLFDP-GQVASTGWDELLYVWNP 308 (311)
T ss_pred --hhhhhhhhccceEEeccccccccC-ceeeecccccceeeecc
Confidence 0011222 2677788999998753 78999999999999984
No 94
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.71 E-value=5.7e-14 Score=167.12 Aligned_cols=394 Identities=13% Similarity=0.139 Sum_probs=255.0
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eee
Q 000992 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~ 151 (1196)
++.|+++.+-+. -+.++.|+..|.++|||..+++. -...++..+|+++.=||-=..+|+|..+|+|.+.+.-++ .+.
T Consensus 159 ~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 159 GDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred CCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 345888854332 37788999999999999998765 466667899999999999999999999999999874443 333
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slaw 230 (1196)
++. ...+.|.+++||-||..+.++|. ..+.+-+||.+.-+++...+ .|.+.+....|
T Consensus 239 sFk----------------~d~g~VtslSFrtDG~p~las~~------~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 239 SFK----------------QDWGRVTSLSFRTDGNPLLASGR------SNGDMAFWDLEKKKLINVTRNAHYGSVTGATF 296 (910)
T ss_pred EEE----------------ccccceeEEEeccCCCeeEEecc------CCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence 322 11267899999999998762332 35889999996667777665 67788888999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEccCC-------------
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVRFEE------------- 295 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWS-pDg~~LAs~~~d~~------------- 295 (1196)
-|.--.+.+++.|+ ...+-+||. .|- -+....+..|...-..|.|- .+|..+-+++.|+.
T Consensus 297 l~~epVl~ta~~Dn----Slk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 297 LPGEPVLVTAGADN----SLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred cCCCceEeeccCCC----ceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 99888888888764 344555552 121 01111222223333444443 44555555554440
Q ss_pred -------------------------------------------------cceEEEEEecCC---EEEEEEEEEEecC--C
Q 000992 296 -------------------------------------------------YDSVKICFFSNN---HWYLKYEIRYLRR--D 321 (1196)
Q Consensus 296 -------------------------------------------------~~~V~lW~~~n~---~wylkq~l~~~~~--~ 321 (1196)
....+-|+..|. .|.|+.. ++... .
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~-~~~~~~~~ 450 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK-RFKKDDIN 450 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc-cccccCcc
Confidence 003444444331 1222111 00000 1
Q ss_pred cEEEEEccCCCceEEEEecCCcEEEEEEEEeee------------------cCCC--eeEEEEcCCEEEEeeccccCCCC
Q 000992 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------------------VMEN--STALVIDGSKILVTPLSLSLMPP 381 (1196)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~------------------~~d~--~~v~viDg~~l~lt~l~~~~vpp 381 (1196)
.+++.-++=|+. ..+++..|.+..++..-.+. .++. -+++..-...++.|+|+....
T Consensus 451 ~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-- 527 (910)
T KOG1539|consen 451 ATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-- 527 (910)
T ss_pred eEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce--
Confidence 133444443333 34455567666555432211 1121 233333334689999987651
Q ss_pred CceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeE
Q 000992 382 PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLL 461 (1196)
Q Consensus 382 pm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~l 461 (1196)
..++.....+..+..+... .++|++..|-.|.++|..+......+.| |.+.+..++|||||+.
T Consensus 528 ---~~~l~l~~~~~~iv~hr~s--~l~a~~~ddf~I~vvD~~t~kvvR~f~g------------h~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 528 ---KKSLRLGSSITGIVYHRVS--DLLAIALDDFSIRVVDVVTRKVVREFWG------------HGNRITDMTFSPDGRW 590 (910)
T ss_pred ---eeeeccCCCcceeeeeehh--hhhhhhcCceeEEEEEchhhhhhHHhhc------------cccceeeeEeCCCCcE
Confidence 2455667778888888887 7899999999999999987544433444 4678999999999999
Q ss_pred EEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEE
Q 000992 462 LSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQ 541 (1196)
Q Consensus 462 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 541 (1196)
|++++.+ +++.+|++.- +.+ .+-..++.+.+++++|| .++.++..
T Consensus 591 lisasmD--~tIr~wDlpt-----------------------------~~l---ID~~~vd~~~~sls~SP-ngD~LAT~ 635 (910)
T KOG1539|consen 591 LISASMD--STIRTWDLPT-----------------------------GTL---IDGLLVDSPCTSLSFSP-NGDFLATV 635 (910)
T ss_pred EEEeecC--CcEEEEeccC-----------------------------cce---eeeEecCCcceeeEECC-CCCEEEEE
Confidence 9998876 6888998731 111 23355688899999999 88999877
Q ss_pred eeC-CeEEEEe
Q 000992 542 FHG-GKISEYM 551 (1196)
Q Consensus 542 ~~d-G~v~~~~ 551 (1196)
-.| .-||.|.
T Consensus 636 Hvd~~gIylWs 646 (910)
T KOG1539|consen 636 HVDQNGIYLWS 646 (910)
T ss_pred EecCceEEEEE
Confidence 666 6688884
No 95
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.71 E-value=1.2e-15 Score=167.76 Aligned_cols=266 Identities=13% Similarity=0.133 Sum_probs=184.5
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC---EEEEEECCCcEEEEE
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE---ALIVGTSSGLLLLHS 103 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~---~La~as~dG~I~lw~ 103 (1196)
+++.-++.|+++|-|+.+..|+. ..+.. .. +.+| .+.|.+++|.--.+ .+++|+.|.+++||-
T Consensus 110 sv~~~~~~IltgsYDg~~riWd~--~Gk~~-~~-------~~Gh----t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 110 SVKGASKWILTGSYDGTSRIWDL--KGKSI-KT-------IVGH----TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred hhcccCceEEEeecCCeeEEEec--CCceE-EE-------EecC----CcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 34455899999999999999998 22221 11 3444 46788788755444 499999999999987
Q ss_pred CCCCe--EE----EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc------------Cccccc
Q 000992 104 VDGNA--TE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA------------EGFDVH 165 (1196)
Q Consensus 104 ~~~~~--~e----~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~------------~~~~Vs 165 (1196)
.+-+. .+ +-| |..+|-+++-++||..++++|.|.+|++|+..-++..+..-.... ...++
T Consensus 176 ~~~~~~~~~~~~~~~G-Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~- 253 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRG-HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL- 253 (423)
T ss_pred ecCchhhhhHHhHhcc-cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-
Confidence 76432 11 235 699999999999999999999999999998322222222111110 00111
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
....+|...|.+|-|++.+-.+- ++ .|.+||+||.++|.+..+.... ....+++.+|..++||+|+.|++
T Consensus 254 -vtl~GHt~~Vs~V~w~d~~v~yS--~S------wDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 254 -VTLEGHTEPVSSVVWSDATVIYS--VS------WDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred -EEecccccceeeEEEcCCCceEe--ec------ccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc
Confidence 22338999999999999554443 33 4799999999999988876543 34589999999999999999764
Q ss_pred CCCCCeEEEEeC-CC--eeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC
Q 000992 246 ENKCPSIVFYER-NG--LERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD 321 (1196)
Q Consensus 246 ~~~~~~V~~~e~-nG--l~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~ 321 (1196)
+++|++ +| ... .+.+-+ |.++|.++.|||-.. +|++++.|+ ++++||+..-.--| ..|..|.+.
T Consensus 324 ------irl~DPR~~~gs~v-~~s~~g-H~nwVssvkwsp~~~~~~~S~S~D~---t~klWDvRS~k~pl-ydI~~h~DK 391 (423)
T KOG0313|consen 324 ------IRLWDPRTGDGSVV-SQSLIG-HKNWVSSVKWSPTNEFQLVSGSYDN---TVKLWDVRSTKAPL-YDIAGHNDK 391 (423)
T ss_pred ------eeecCCCCCCCcee-EEeeec-chhhhhheecCCCCceEEEEEecCC---eEEEEEeccCCCcc-eeeccCCce
Confidence 999994 33 111 123434 457999999999776 688999999 99999987532111 234443333
Q ss_pred cEEEEEccC
Q 000992 322 GIRFMWHPT 330 (1196)
Q Consensus 322 ~~~v~Wsp~ 330 (1196)
..++.|...
T Consensus 392 vl~vdW~~~ 400 (423)
T KOG0313|consen 392 VLSVDWNEG 400 (423)
T ss_pred EEEEeccCC
Confidence 367777643
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.71 E-value=9.5e-15 Score=169.58 Aligned_cols=158 Identities=18% Similarity=0.323 Sum_probs=145.8
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHH
Q 000992 947 FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMK 1024 (1196)
Q Consensus 947 y~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~ 1024 (1196)
|++|-.+|.+..+ |++|+|++++. .-|-+|++|. .-|++.-.+-++||+||+..++++.|..+|..|+...||++
T Consensus 664 ydkagdlfeki~d--~dkale~fkkg-daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHD--FDKALECFKKG-DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHhhhhHHHHhhC--HHHHHHHHHcc-cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 9999999999966 99999999999 9999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000992 1025 AYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1025 ~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~ 1104 (1196)
+.+.+..|.+|+.+...+. +..-....+-++|++..+.|+|+-|.++|.+ .+-++.||+||-+++.|++|++|+.+..
T Consensus 741 aai~akew~kai~ildniq-dqk~~s~yy~~iadhyan~~dfe~ae~lf~e-~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQ-DQKTASGYYGEIADHYANKGDFEIAEELFTE-ADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhh-hhccccccchHHHHHhccchhHHHHHHHHHh-cchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 9999999999999998764 3333345788999999999999999999999 9999999999999999999999999966
Q ss_pred CchhH
Q 000992 1105 REDLI 1109 (1196)
Q Consensus 1105 ~~dL~ 1109 (1196)
+|+-.
T Consensus 819 ~~e~t 823 (1636)
T KOG3616|consen 819 GPEAT 823 (1636)
T ss_pred CchhH
Confidence 66543
No 97
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=1.5e-15 Score=168.33 Aligned_cols=319 Identities=13% Similarity=0.165 Sum_probs=194.3
Q ss_pred CCCEEEEEEccCCC-EEEEEECCCcEEEEECCC----C---eEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEE
Q 000992 75 GDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG----N---ATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1196)
Q Consensus 75 ~~~v~~v~~spd~~-~La~as~dG~I~lw~~~~----~---~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~ 143 (1196)
...|.++.|.+.+. .||+|+.|.+|+||-++. + .++ .++.|+..|+++.|||+|++||+|+.+|+|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35789999999887 999999999999998742 2 444 567789999999999999999999999999999
Q ss_pred eccCceeeeeeccc-cc--CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc
Q 000992 144 THDWDLLYENPLEE-LA--EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL 220 (1196)
Q Consensus 144 ~~~~d~~~~~~l~~-~~--~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~ 220 (1196)
...-..+. .-.. .+ ...++.--...+|.+.+..++|+||+.+++ +++. |.++++||...|+++.+...
T Consensus 93 k~~~~~~~--~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~-s~s~------dns~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 93 KQGDVRIF--DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV-SGSV------DNSVRLWDVHAGQLLAILDD 163 (434)
T ss_pred EecCcCCc--cccchhhhCccceEEEEEecccccchhhhhccCCCceee-eeec------cceEEEEEeccceeEeeccc
Confidence 64311111 0000 00 011111111226788899999999999999 6764 68999999999999999999
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec----cCCC-------------CcEEEEEEccC
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN----EQID-------------STVELLKWNCM 283 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~----~~~~-------------~~V~~laWSpD 283 (1196)
|...+..++|-|-+++||+-+.|.. ......-|.+-+.+++.-.++ .+.+ ..-..++|+||
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~--~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd 241 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRH--PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD 241 (434)
T ss_pred cccccceeecchhhhhhhhhccCcc--cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence 9999999999999999999887752 011111122222222211111 0011 12446899999
Q ss_pred CCeeEEEEccC--Cc----ceEEEEEecCCEEEEEEEEEEecC--C-cEEEEEccCCCceEEEEecCCcE--EEEEEEEe
Q 000992 284 SDLLAAVVRFE--EY----DSVKICFFSNNHWYLKYEIRYLRR--D-GIRFMWHPTKPLQLICWTLDGQI--TTYNFIWT 352 (1196)
Q Consensus 284 g~~LAs~~~d~--~~----~~V~lW~~~n~~wylkq~l~~~~~--~-~~~v~Wsp~~~~~L~~~~~~g~~--~~~~~~~~ 352 (1196)
|.+|.+...-- ++ ++..+++.+. |++...-.+. . ...+.++|--- .|.-....+.+ ..|..+
T Consensus 242 G~llvtPag~~~~g~~~~~n~tYvfsrk~----l~rP~~~lp~~~k~~lavr~~pVy~-elrp~~~~~~~~~lpyrlv-- 314 (434)
T KOG1009|consen 242 GSLLVTPAGLFKVGGGVFRNTSYVFSRKD----LKRPAARLPSPKKPALAVRFSPVYY-ELRPLSSEKFLFVLPYRLV-- 314 (434)
T ss_pred CcEEEcccceeeeCCceeeceeEeecccc----ccCceeecCCCCcceEEEEeeeeEE-EeccccccccccccccceE--
Confidence 99998854321 01 1223333332 2222111110 0 13334443110 00000000000 011222
Q ss_pred eecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 353 TAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 353 ~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.++.--+.+++.+- ..+-|++.-.--|=.++++++||+|| +.|++.+.||-..+-.++.
T Consensus 315 --------faiAt~~svyvydt---q~~~P~~~v~nihy~~iTDiaws~dg--~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 315 --------FAIATKNSVYVYDT---QTLEPLAVVDNIHYSAITDIAWSDDG--SVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred --------EEEeecceEEEecc---ccccceEEEeeeeeeeecceeecCCC--cEEEEeccCCceEEEEEcc
Confidence 23333334444432 22345543322366789999999999 8999999999888777664
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=4.3e-16 Score=172.71 Aligned_cols=277 Identities=14% Similarity=0.183 Sum_probs=200.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee---cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV---EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~---~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
.+.|.++.|.++...|++|+.|..|++|+..+++.+..+.. -++|+++.|-||+..+..+|.|+++.+|+-+ .
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd----~ 250 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD----S 250 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc----c
Confidence 47899999999999999999999999999998775533322 4669999999999999999999999888632 2
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
....+ ++.+|.+.|+++.|.-.-..++ +++ .|++||.||...+.+..+.-+.. ....|.-+
T Consensus 251 ~r~~~-----------TLsGHtdkVt~ak~~~~~~~vV-sgs------~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~ 311 (459)
T KOG0288|consen 251 LRLRH-----------TLSGHTDKVTAAKFKLSHSRVV-SGS------ADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCS 311 (459)
T ss_pred hhhhh-----------hhcccccceeeehhhcccccee-ecc------ccchhhhhhhhhhheeccccccc-cccceEec
Confidence 22222 2347888999999987766555 344 57999999997777776644322 23555555
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+..+.|+-.| .+|+||+ +.+....+ . +..+.|.+|..|+||..|.+.+.|. ++.+.++.++.
T Consensus 312 --~~~~~SgH~D------kkvRfwD~Rs~~~~~s--v--~~gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~e-- 374 (459)
T KOG0288|consen 312 --ISDVISGHFD------KKVRFWDIRSADKTRS--V--PLGGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKE-- 374 (459)
T ss_pred --ceeeeecccc------cceEEEeccCCceeeE--e--ecCcceeeEeeccCCeEEeeecCCC---ceeeeeccccc--
Confidence 5567777665 3599999 66544432 2 2345899999999999999999888 99999998865
Q ss_pred EEEEEEEec----CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 311 LKYEIRYLR----RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 311 lkq~l~~~~----~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
.++.+.... .+.+.+.|||++.+ +..++.+|.++ +|++. .|+.-++-...
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~----iW~v~----------tgKlE~~l~~s----------- 428 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVY----IWSVF----------TGKLEKVLSLS----------- 428 (459)
T ss_pred EEEEeeccccccccccceeEECCCCce-eeeccCCCcEE----EEEcc----------CceEEEEeccC-----------
Confidence 234443221 12267889999987 67777778764 56553 12211110000
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 387 ~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
..+..|.+++|+|.| ..|++++.++.+.+|.
T Consensus 429 --~s~~aI~s~~W~~sG--~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 429 --TSNAAITSLSWNPSG--SGLLSADKQKAVTLWT 459 (459)
T ss_pred --CCCcceEEEEEcCCC--chhhcccCCcceEecC
Confidence 012269999999999 8999999999999994
No 99
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.2e-14 Score=151.04 Aligned_cols=240 Identities=15% Similarity=0.150 Sum_probs=168.0
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
+.+.|..+.|..||+|..|+++ |++||+||+-.|.++.+..+|...|-.++-+.|...+|+++.|+ .
T Consensus 16 ~qgaV~avryN~dGnY~ltcGs-------drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk------~ 82 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGS-------DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK------A 82 (307)
T ss_pred cccceEEEEEccCCCEEEEcCC-------CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc------e
Confidence 4467899999999999986543 79999999999999999999999999999999999999999864 5
Q ss_pred EEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 252 IVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
|.+|+.| |..... +++ |.+.|+.++||.++.++++++-|. ++|+||......--.|.+.-.
T Consensus 83 v~vwDV~TGkv~Rr--~rg-H~aqVNtV~fNeesSVv~SgsfD~---s~r~wDCRS~s~ePiQildea------------ 144 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRR--FRG-HLAQVNTVRFNEESSVVASGSFDS---SVRLWDCRSRSFEPIQILDEA------------ 144 (307)
T ss_pred EEEEEcccCeeeee--ccc-ccceeeEEEecCcceEEEeccccc---eeEEEEcccCCCCccchhhhh------------
Confidence 9999975 444333 333 357899999999999999999999 999999865221111111100
Q ss_pred CCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEE
Q 000992 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAA 410 (1196)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs 410 (1196)
.|| +-++...+.-+++-.-+.+++..+++...+ |+. .+..+|++|.||+|+ +...+
T Consensus 145 ---------~D~-------V~Si~v~~heIvaGS~DGtvRtydiR~G~l---~sD---y~g~pit~vs~s~d~--nc~La 200 (307)
T KOG0316|consen 145 ---------KDG-------VSSIDVAEHEIVAGSVDGTVRTYDIRKGTL---SSD---YFGHPITSVSFSKDG--NCSLA 200 (307)
T ss_pred ---------cCc-------eeEEEecccEEEeeccCCcEEEEEeeccee---ehh---hcCCcceeEEecCCC--CEEEE
Confidence 011 111111222333332223566666665442 111 256789999999999 88888
Q ss_pred EECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 411 ILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 411 ~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
++-|++|+|-|.++...++...|+.-+ . -.+ .-++.+..+.+++++.+ ..+.+|.+
T Consensus 201 ~~l~stlrLlDk~tGklL~sYkGhkn~-e--------ykl-dc~l~qsdthV~sgSED--G~Vy~wdL 256 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGKLLKSYKGHKNM-E--------YKL-DCCLNQSDTHVFSGSED--GKVYFWDL 256 (307)
T ss_pred eeccceeeecccchhHHHHHhcccccc-e--------eee-eeeecccceeEEeccCC--ceEEEEEe
Confidence 889999999999988777666665211 0 011 12445556677776655 67888887
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.2e-14 Score=150.75 Aligned_cols=281 Identities=14% Similarity=0.156 Sum_probs=197.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~ 151 (1196)
.+.|.+|.|+++|+.|++.++|-+++|||...++ ..++.+.+-||..++|-.....+..+|. |.+|+..+.. .
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~----d 89 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH----D 89 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee----c
Confidence 5789999999999999999999999999987764 4577777789999999877777777765 7788765421 1
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
...+ .-|.||.+.|.+|+-+|-+..|. +++ .|++||+||...-+++-... ..+ -...||.
T Consensus 90 Nkyl-----------RYF~GH~~~V~sL~~sP~~d~Fl-S~S------~D~tvrLWDlR~~~cqg~l~-~~~-~pi~AfD 149 (311)
T KOG1446|consen 90 NKYL-----------RYFPGHKKRVNSLSVSPKDDTFL-SSS------LDKTVRLWDLRVKKCQGLLN-LSG-RPIAAFD 149 (311)
T ss_pred CceE-----------EEcCCCCceEEEEEecCCCCeEE-ecc------cCCeEEeeEecCCCCceEEe-cCC-CcceeEC
Confidence 1111 14668999999999999999999 566 46999999986555544432 111 2568999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeE---EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+|-++|.+... ..|++|+.---.. ..|.+..+.......|.|||||+.|......+ .+.+-|.=.+.
T Consensus 150 p~GLifA~~~~~------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~G~ 220 (311)
T KOG1446|consen 150 PEGLIFALANGS------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFDGT 220 (311)
T ss_pred CCCcEEEEecCC------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccCCc
Confidence 999999998762 3799998521111 22444433356788999999999999998887 67777754443
Q ss_pred EEEEEEEEEecCCc---EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 309 WYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 309 wylkq~l~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
+++.+...+... ....|.||+.. +..+..+|++.+|+ .. .|..+..|. + |
T Consensus 221 --~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~----~~----------tg~~v~~~~--~----~---- 273 (311)
T KOG1446|consen 221 --VKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWN----LE----------TGKKVAVLR--G----P---- 273 (311)
T ss_pred --EeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEE----cC----------CCcEeeEec--C----C----
Confidence 677777766443 67889999976 55666678776443 32 333332221 0 0
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+..++.++-|+|-- -++|+ ++..+.+|-.+
T Consensus 274 ----~~~~~~~~~fnP~~--~mf~s--a~s~l~fw~p~ 303 (311)
T KOG1446|consen 274 ----NGGPVSCVRFNPRY--AMFVS--ASSNLVFWLPD 303 (311)
T ss_pred ----CCCCccccccCCce--eeeee--cCceEEEEecc
Confidence 23456677799976 45554 45678888765
No 101
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.68 E-value=4.8e-15 Score=161.49 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=190.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
++-++++||-+.-+.++|.|..|..||+ -++... . + |.+| -..|..+++|+--.+|.+++.|+.|+-
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDl--atg~Lk--l-t----ltGh----i~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDL--ATGQLK--L-T----LTGH----IETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEc--ccCeEE--E-e----ecch----hheeeeeeecccCceEEEecCCCeeEE
Confidence 8899999999887777889999999999 666542 2 1 4544 247999999999999999999999999
Q ss_pred EECCCCeE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||++..++ . --| |-.+|.|++.-|--..|++++.|.++++|+ .-+....+... +|++.|.++
T Consensus 220 wDLe~nkvIR~YhG-HlS~V~~L~lhPTldvl~t~grDst~RvWD----iRtr~~V~~l~-----------GH~~~V~~V 283 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHG-HLSGVYCLDLHPTLDVLVTGGRDSTIRVWD----IRTRASVHVLS-----------GHTNPVASV 283 (460)
T ss_pred EechhhhhHHHhcc-ccceeEEEeccccceeEEecCCcceEEEee----ecccceEEEec-----------CCCCcceeE
Confidence 99988665 3 445 568899999999999999999999998875 33333333332 778888999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
.+.|-.-.+. ++|. |.+||+||...|+...++..|...+.+++.+|.-+++||++.| .|+-|..
T Consensus 284 ~~~~~dpqvi-t~S~------D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-------nik~w~~-- 347 (460)
T KOG0285|consen 284 MCQPTDPQVI-TGSH------DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-------NIKQWKL-- 347 (460)
T ss_pred EeecCCCceE-EecC------CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-------cceeccC--
Confidence 9998444566 4653 6899999999999999999999999999999999999999976 4777752
Q ss_pred eeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 260 LERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 260 l~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
.+|+|.-. ..+..-|+.|+-+.|| ++.+|+..+ ++.+||+...|-|.
T Consensus 348 -p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng---~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 348 -PEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG---SIMFWDWKSGHNYQ 395 (460)
T ss_pred -CccchhhccccccceeeeeeeccCc-eEEEcCCce---EEEEEecCcCcccc
Confidence 35555322 1234568999999999 566777777 89999999776553
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.68 E-value=9.4e-15 Score=162.85 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=183.3
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.++.+-+..+.+.++..|...+..|- ..+.. +.+ +.+|. -.|+++.|+|+...+++++.|-.|++|
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~--~s~q~---l~~----~~Gh~----kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDK--PSNQI---LAT----LKGHT----KKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEec--chhhh---hhh----ccCcc----eEEEEEEeccchhheeecCCcceEEee
Confidence 344444444578888888877888876 33332 222 45553 489999999999999999999999999
Q ss_pred ECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 103 SVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 103 ~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
+...... ..+-.|+..|+.+.-.|.|++|.+++.|++.-+-+ +++..+.. +.++ ..+-.+.+.+
T Consensus 289 s~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~---vs~~-----------~s~v~~ts~~ 354 (506)
T KOG0289|consen 289 SVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV---VSDE-----------TSDVEYTSAA 354 (506)
T ss_pred ccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE---Eeec-----------cccceeEEee
Confidence 9865433 35556899999999999999999999999986643 22222221 1111 1123578999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
|.|||-.|+ .++ .|+.+||||..++.-...+.+|.+.|.+|+|+-+|-++|++.+|. .|++||..-+
T Consensus 355 fHpDgLifg-tgt------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~------~V~lwDLRKl 421 (506)
T KOG0289|consen 355 FHPDGLIFG-TGT------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG------SVKLWDLRKL 421 (506)
T ss_pred EcCCceEEe-ccC------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC------eEEEEEehhh
Confidence 999999999 565 478999999988888889999999999999999999999999874 4999995433
Q ss_pred e-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 261 E-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 261 ~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
+ ...|.+. ....|.++.|.+.|++|++++.+- +|.+..-..-.|....++..
T Consensus 422 ~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l---~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 422 KNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDL---QVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred cccceeecc--ccccceeEEEcCCCCeEEeeccee---EEEEEecccccceeeehhhh
Confidence 2 1223332 223599999999999999997765 55555555666755444443
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.67 E-value=2e-14 Score=167.18 Aligned_cols=327 Identities=16% Similarity=0.148 Sum_probs=213.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc------------CCCE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM------------EKEA 89 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp------------d~~~ 89 (1196)
-+.++.||+.++.|-|+-.|+.||.||+-..++-+.+.. +--| ...|++|.-.| .+ .
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s------~lyH----S~ciW~Ve~~p~nv~~~~~aclp~~-c 394 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS------MLYH----SACIWDVENLPCNVHSPTAACLPRG-C 394 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccccccceee------eeec----cceeeeeccccccccCcccccCCcc-c
Confidence 477889999999999999999999999953333221110 1111 23455554444 33 3
Q ss_pred EEEEECCCcEEEEECCCC---eE-----------EE--------------eee----------ecCcEEEEEECCCCCEE
Q 000992 90 LIVGTSSGLLLLHSVDGN---AT-----------EV--------------VGR----------VEGGVRFISPSPDGDLL 131 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~---~~-----------e~--------------vg~----------~~~~I~~~awSPDg~~L 131 (1196)
+.+.++||||++|+++.+ .+ .+ .|. -..||.+++.||||+.|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 678899999999998751 11 00 000 12489999999999999
Q ss_pred EEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc---CCceEEEeeccccccCCCCEEEEEE
Q 000992 132 GVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG---DGKYFATLSEFCNSSKLHKRLKVWE 208 (1196)
Q Consensus 132 A~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp---DG~~lAsvss~d~~~~~d~~irVWd 208 (1196)
|+|..-|++++.+.. .+.... ..-+|+..|.++.+|- ..++|| +++ .||.|.|+|
T Consensus 475 AsGDr~GnlrVy~Lq--~l~~~~-------------~~eAHesEilcLeyS~p~~~~kLLA-Sas------rdRlIHV~D 532 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQ--ELEYTC-------------FMEAHESEILCLEYSFPVLTNKLLA-SAS------RDRLIHVYD 532 (1080)
T ss_pred cccCccCceEEEEeh--hhhhhh-------------heecccceeEEEeecCchhhhHhhh-hcc------CCceEEEEe
Confidence 999999999876421 011000 0115777889999984 236788 565 579999999
Q ss_pred CC-CCcEEEEeccCCCceeEEEEcCCC--CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC---CCcEEEEEEcc
Q 000992 209 RD-SGTLQASSELKAFMGAVLEWMPSG--ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI---DSTVELLKWNC 282 (1196)
Q Consensus 209 ~~-~G~l~~~~e~~~~~v~slawsPdG--~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~---~~~V~~laWSp 282 (1196)
.. +=.++.++.+|...|.++.|--+| ....+++.|+. ...+.+.+.|.- ..|. +.++ ...+++++--|
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks----imFr~~qk~~~g-~~f~-r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS----IMFRVNQKASSG-RLFP-RHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchh----hheehhccccCc-eecc-ccccccccceEEEeeeCC
Confidence 83 334677888899999999999988 44555555542 122222222211 0111 1111 23689999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-c--EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCe
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1196)
..+++++++.|+ .|+|+++.+.+ +++.+..+... + ..+.-+|.+-+ |+..+.|.++-++
T Consensus 607 ~~k~v~t~cQDr---nirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~------------ 668 (1080)
T KOG1408|consen 607 TSKLVVTVCQDR---NIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFV------------ 668 (1080)
T ss_pred CcceEEEEeccc---ceEEEeccccc--eeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEE------------
Confidence 999999999999 89999999875 23444433321 2 45556665543 3333334444333
Q ss_pred eEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+|...-.-..| .+|...|+.|-|++|- ++|.+++.||.|.+|+++.
T Consensus 669 -------------Df~sgEcvA~m----~GHsE~VTG~kF~nDC--kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 -------------DFVSGECVAQM----TGHSEAVTGVKFLNDC--KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -------------Eeccchhhhhh----cCcchheeeeeecccc--hhheeecCCceEEEEECch
Confidence 33222111122 3588999999999999 8999999999999999975
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=9.3e-15 Score=165.55 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=170.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCE-EEEEeCCceEEEEeccCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~-LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
.+.|.++.|-.||+.||.|.+.|-|+++|..+..+ ...-+|+.+|..+.|+|++.+ |++|+.|+.+++|..+.... .
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-Q 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-E
Confidence 36799999999999999999999999999666333 355667999999999998765 55556666776765332211 1
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
.. ..+|.|.|.+.+|+|-...++.+|+ -|++||+||...- ..+..+. |...|.++-+=
T Consensus 147 ~~--------------l~~htDYVR~g~~~~~~~hivvtGs------YDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~l 205 (487)
T KOG0310|consen 147 AE--------------LSGHTDYVRCGDISPANDHIVVTGS------YDGKVRLWDTRSLTSRVVELN-HGCPVESVLAL 205 (487)
T ss_pred EE--------------ecCCcceeEeeccccCCCeEEEecC------CCceEEEEEeccCCceeEEec-CCCceeeEEEc
Confidence 11 1267789999999998764441465 4699999998543 4444443 77889999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
|+|.+||+++. +.|++||.. |-+. ......|.-.|.+|+++.||+.|.+++-|+ .|+++++.||+
T Consensus 206 psgs~iasAgG-------n~vkVWDl~~G~ql--l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~---~VKVfd~t~~K-- 271 (487)
T KOG0310|consen 206 PSGSLIASAGG-------NSVKVWDLTTGGQL--LTSMFNHNKTVTCLRLASDSTRLLSGSLDR---HVKVFDTTNYK-- 271 (487)
T ss_pred CCCCEEEEcCC-------CeEEEEEecCCcee--hhhhhcccceEEEEEeecCCceEeeccccc---ceEEEEccceE--
Confidence 99999999986 479999975 4221 111122446799999999999999999999 89999999875
Q ss_pred EEEEEEEecCCcEEEEEccCCCceEEEEecCCcE
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
.++.+.++. ...++.-+|++. ++.++-.+|-+
T Consensus 272 vv~s~~~~~-pvLsiavs~dd~-t~viGmsnGlv 303 (487)
T KOG0310|consen 272 VVHSWKYPG-PVLSIAVSPDDQ-TVVIGMSNGLV 303 (487)
T ss_pred EEEeeeccc-ceeeEEecCCCc-eEEEeccccee
Confidence 566676632 237778888654 46666655543
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=5.7e-15 Score=158.22 Aligned_cols=304 Identities=13% Similarity=0.085 Sum_probs=213.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe--ccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~--~~~d~~~ 151 (1196)
.+.|+.++--.....+.++|+|.+-.||.++++.+. ...+|.+.|++++|+|.|.+++++++|++.-+|. -.|.+-.
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~ 227 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPS 227 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCC
Confidence 367888887777788899999999999999998875 4455789999999999999999999999998885 3454322
Q ss_pred ee---eccccc----Cccc--------------cc--cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEE
Q 000992 152 EN---PLEELA----EGFD--------------VH--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE 208 (1196)
Q Consensus 152 ~~---~l~~~~----~~~~--------------Vs--~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd 208 (1196)
.. ....++ ..++ |. ...|.+|-..|....|-.-|+..+ .+++ ||+-.+||
T Consensus 228 ~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSW------DRTAnlwD 300 (481)
T KOG0300|consen 228 NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASW------DRTANLWD 300 (481)
T ss_pred CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeec------cccceeee
Confidence 10 000000 0011 10 345568888899999999999999 5664 69999999
Q ss_pred CCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeE
Q 000992 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 209 ~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1196)
.++|++...+.+|+.....++=.|..+++.++++|. +.++|+-.-..+..-.+.+ ++..|.++.|+-|-+ ++
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt------TFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~dd~-vV 372 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT------TFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTDDR-VV 372 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCc------eeEeccchhhcceeeeecc-cccceeEEEEecCCc-ee
Confidence 999999999999999889999999999999999975 5999985433333222333 467899999998875 56
Q ss_pred EEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE
Q 000992 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1196)
+++.|+ +|++|++.|..--| .+++. =+|- .++.+..+ +.+... |+ |...
T Consensus 373 SgSDDr---TvKvWdLrNMRspl-ATIRt---------dS~~--NRvavs~g-~~iIAi-------Ph--------DNRq 421 (481)
T KOG0300|consen 373 SGSDDR---TVKVWDLRNMRSPL-ATIRT---------DSPA--NRVAVSKG-HPIIAI-------PH--------DNRQ 421 (481)
T ss_pred ecCCCc---eEEEeeeccccCcc-eeeec---------CCcc--ceeEeecC-CceEEe-------cc--------CCce
Confidence 888898 99999999965211 12221 0111 12333321 111100 22 4556
Q ss_pred EEEeeccccCCCC-CceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 369 ILVTPLSLSLMPP-PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 369 l~lt~l~~~~vpp-pm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+++.++.+.-+|. |-.. .-.|..-|.++||+-+..-.-|.+++-|..+.-|+..++
T Consensus 422 vRlfDlnG~RlaRlPrts-RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTS-RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEEEecCCCccccCCccc-ccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 7777776544432 2111 124677799999998764455778889999999998754
No 106
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=2.6e-15 Score=179.95 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=162.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC--------------------------------C---------------
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG--------------------------------N--------------- 107 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~--------------------------------~--------------- 107 (1196)
.+.|+++.||+||++||+|++||-|+||.+.. .
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 57899999999999999999999999997633 0
Q ss_pred ---------------eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 108 ---------------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 108 ---------------~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.++..| |.+-|..++||-+ .+|.++|.|+||+|| .+-...+|... .|
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSKn-~fLLSSSMDKTVRLW----h~~~~~CL~~F------------~H 408 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSKN-NFLLSSSMDKTVRLW----HPGRKECLKVF------------SH 408 (712)
T ss_pred cccCCCccccccccchhhhhc-cchhheecccccC-CeeEeccccccEEee----cCCCcceeeEE------------ec
Confidence 001234 5788999999988 788999999999876 44455566544 47
Q ss_pred CCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 173 FSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 173 ~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
.+-|++|+|.| |-+||+ +|+. |+++|||+. ....+.-......+|++++|+|||+....|+.+ +.
T Consensus 409 ndfVTcVaFnPvDDryFi-SGSL------D~KvRiWsI-~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~------G~ 474 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFI-SGSL------DGKVRLWSI-SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN------GY 474 (712)
T ss_pred CCeeEEEEecccCCCcEe-eccc------ccceEEeec-CcCeeEeehhhhhhheeEEeccCCceEEEEEec------cE
Confidence 78889999999 778999 6886 589999999 554444444466889999999999999999985 46
Q ss_pred EEEEeCCCeeE-EEEEeccC-----CCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC--Cc
Q 000992 252 IVFYERNGLER-SSFDINEQ-----IDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DG 322 (1196)
Q Consensus 252 V~~~e~nGl~~-~~f~l~~~-----~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~--~~ 322 (1196)
.+||+..|+.. ..+.+..+ ....|..+.|.|-. ..+.+.+.|. .|||+|...-. |..-+....+ ++
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS---rIRI~d~~~~~--lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDS---RIRIYDGRDKD--LVHKFKGFRNTSSQ 549 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCC---ceEEEeccchh--hhhhhcccccCCcc
Confidence 99999888754 33444321 11369999998643 3466666777 79999984311 1112222111 22
Q ss_pred EEEEEccCCCceEEEEe
Q 000992 323 IRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~ 339 (1196)
....|+.+|.. |..++
T Consensus 550 ~~Asfs~Dgk~-IVs~s 565 (712)
T KOG0283|consen 550 ISASFSSDGKH-IVSAS 565 (712)
T ss_pred eeeeEccCCCE-EEEee
Confidence 55666666544 44444
No 107
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=8.4e-15 Score=180.10 Aligned_cols=291 Identities=17% Similarity=0.165 Sum_probs=192.9
Q ss_pred EEEEECCCCC-EEEEEeCCceEEEEeccCceeeeeeccccc------CccccccCccccCCCCeEEEEEccCCce----E
Q 000992 120 RFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELA------EGFDVHEPELSSSFSFKSPISWRGDGKY----F 188 (1196)
Q Consensus 120 ~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~------~~~~Vs~tqf~~~~~~v~~isWspDG~~----l 188 (1196)
...+|||++. +||+|+..+.+- ..|..-....+-..+ +-+++... ..+.+...++|.+-|.- +
T Consensus 10 a~~awSp~~~~~laagt~aq~~D---~sfst~~slEifeld~~~~~~dlk~~~s~---~s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFD---ASFSTSASLEIFELDFSDESSDLKPVGSL---QSSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccc---cccccccccceeeecccCccccccccccc---cccccceeeeecccCCCcccee
Confidence 4578999998 788887665542 222111111111111 11333100 12345689999988876 5
Q ss_pred EEeeccccccCCCCEEEEEECCC---C---cEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCee
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDS---G---TLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLE 261 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~---G---~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1196)
| ++ .+|+.|-+||... + +++.+...|.|.|..|.|+|.+. ++|||..+ ..|.|||.|...
T Consensus 84 a--GG-----~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~------geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 84 A--GG-----LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD------GEILIWDLNKPE 150 (1049)
T ss_pred e--cc-----ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC------CcEEEeccCCcC
Confidence 5 44 3689999999843 1 23445567999999999999765 99999875 479999988632
Q ss_pred EEEEEeccC-CCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC--c--EEEEEccCCCceE
Q 000992 262 RSSFDINEQ-IDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD--G--IRFMWHPTKPLQL 335 (1196)
Q Consensus 262 ~~~f~l~~~-~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~--~--~~v~Wsp~~~~~L 335 (1196)
..|+.... ....|..|+||- ...+||+++.++ .+-|||+... ++.+.+.... . ..+.|||+...++
T Consensus 151 -tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg---~~~iWDlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 151 -TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG---RAVIWDLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred -CCCCCCCCCCcccceEeccchhhhHHhhccCCCC---CceeccccCC----CcccccccCCCccceeeeeeCCCCceee
Confidence 22333211 235799999996 577999999998 7999999864 2344443222 1 5799999999888
Q ss_pred EEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECC
Q 000992 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSD 414 (1196)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~d 414 (1196)
.+.+.+.+ .-.|++|++|-...|- +.+ .|...|.+++|++.++ .+|++.+.|
T Consensus 223 ~~As~dd~----------------------~PviqlWDlR~assP~----k~~~~H~~GilslsWc~~D~-~lllSsgkD 275 (1049)
T KOG0307|consen 223 LVASGDDS----------------------APVIQLWDLRFASSPL----KILEGHQRGILSLSWCPQDP-RLLLSSGKD 275 (1049)
T ss_pred eeecCCCC----------------------CceeEeecccccCCch----hhhcccccceeeeccCCCCc-hhhhcccCC
Confidence 88775421 1257788888766543 334 4888899999999984 678899999
Q ss_pred CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCe-EEEEEecCCCCceEEEEe
Q 000992 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHL-LLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 415 g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~-lla~~~~~~~~~~~~~~~ 478 (1196)
+.|.+|+.++.+.+..+. ...+++..+.|.|.+- ++|+++-+ +.+-++++
T Consensus 276 ~~ii~wN~~tgEvl~~~p------------~~~nW~fdv~w~pr~P~~~A~asfd--gkI~I~sl 326 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELP------------AQGNWCFDVQWCPRNPSVMAAASFD--GKISIYSL 326 (1049)
T ss_pred CCeeEecCCCceEeeecC------------CCCcceeeeeecCCCcchhhhheec--cceeeeee
Confidence 999999998754442221 1346899999988654 45544332 34555554
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.2e-14 Score=156.55 Aligned_cols=261 Identities=18% Similarity=0.093 Sum_probs=170.0
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
+.+|.+.|++++||.||+.||++++|++|++|+ ++|....-.++... | ..+.-+.+.|+||.+-++
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-----v-------e~dhpT~V~FapDc~s~v- 148 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-----V-------EYDHPTRVVFAPDCKSVV- 148 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-----c-------cCCCceEEEECCCcceEE-
Confidence 445789999999999999999999999999997 56543222222111 1 012337899999999888
Q ss_pred eeccccccCCCCEEEEEEC---CCCcEEEEecc---------CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 191 LSEFCNSSKLHKRLKVWER---DSGTLQASSEL---------KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~---~~G~l~~~~e~---------~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
++-.. ..+++||-. .+|.....+-+ |.-.+.++-.--.+.+|+|++.|. +|.+|+..
T Consensus 149 v~~~~-----g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt------~i~lw~lk 217 (420)
T KOG2096|consen 149 VSVKR-----GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT------KICLWDLK 217 (420)
T ss_pred EEEcc-----CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCC------cEEEEecC
Confidence 66532 368888854 24543333222 333456777788899999999864 69999987
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
|...+..... ...-...+-||||++||+++-.. -|++|.. .|
T Consensus 218 Gq~L~~idtn---q~~n~~aavSP~GRFia~~gFTp---DVkVwE~-----------~f--------------------- 259 (420)
T KOG2096|consen 218 GQLLQSIDTN---QSSNYDAAVSPDGRFIAVSGFTP---DVKVWEP-----------IF--------------------- 259 (420)
T ss_pred Cceeeeeccc---cccccceeeCCCCcEEEEecCCC---CceEEEE-----------Ee---------------------
Confidence 8665533211 22344678999999999988766 5888742 12
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcE
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v 417 (1196)
+.+|++....-+ ++| +|.+.|...+||++. ..+++++.||++
T Consensus 260 ~kdG~fqev~rv-----------------------------------f~LkGH~saV~~~aFsn~S--~r~vtvSkDG~w 302 (420)
T KOG2096|consen 260 TKDGTFQEVKRV-----------------------------------FSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKW 302 (420)
T ss_pred ccCcchhhhhhh-----------------------------------heeccchhheeeeeeCCCc--ceeEEEecCCcE
Confidence 112322100000 123 478899999999999 899999999999
Q ss_pred EEEeCCCCCccccccCCceeeeeec--c-cccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 418 CVVDLPAPDMLEDLEGTEFVVEACI--S-ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~~~--~-~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+||+.+-.-. .|...+++... + .........++.+|+|+.||+++. +.+.++..
T Consensus 303 riwdtdVrY~----~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~s 359 (420)
T KOG2096|consen 303 RIWDTDVRYE----AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFAS 359 (420)
T ss_pred EEeeccceEe----cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEc
Confidence 9999864211 11122211111 1 011124457899999999998775 45555543
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.7e-14 Score=173.48 Aligned_cols=273 Identities=17% Similarity=0.160 Sum_probs=190.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC--eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~--~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
++-+.|.|-|+|+.|++++.||.|++|+.... ..++.-. .+....+..-++..+++++.+++|.+.+.. ....+.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp-s~~~~~ 90 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFP-SGEEDT 90 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCC-CCCccc
Confidence 56899999999999999999999999997653 2232221 334455556677899999999999886521 000000
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
-+. ...-.+..++++++|+++| .++ .|-.|++-+..++....++++|++.|.+|.|.|.
T Consensus 91 iL~--------------Rftlp~r~~~v~g~g~~ia-ags------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 91 ILA--------------RFTLPIRDLAVSGSGKMIA-AGS------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK 149 (933)
T ss_pred eee--------------eeeccceEEEEecCCcEEE-eec------CceeEEEEeccccchheeecccCCceeeeeEcCC
Confidence 000 0112457899999999999 576 4688999999888888999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEecc--C----C-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINE--Q----I-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~--~----~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
|+++|+++-++ .|.+|+.. |... +++.+ + . ...+..++|+|+|-.||+...|+ +|++++..
T Consensus 150 ~~fLAvss~dG------~v~iw~~~~~~~~--~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~---~Vkvy~r~ 218 (933)
T KOG1274|consen 150 GNFLAVSSCDG------KVQIWDLQDGILS--KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN---TVKVYSRK 218 (933)
T ss_pred CCEEEEEecCc------eEEEEEcccchhh--hhcccCCccccccccceeeeeeecCCCCeEEeeccCC---eEEEEccC
Confidence 99999999864 69999954 2111 12220 1 0 22367899999988888888887 89999999
Q ss_pred CCEEEEEEEEEEec-CC-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc
Q 000992 306 NNHWYLKYEIRYLR-RD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1196)
Q Consensus 306 n~~wylkq~l~~~~-~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm 383 (1196)
+|.- -..++... .. ...+.|+|.|.+ |+..+.+|++.+ |++. +
T Consensus 219 ~we~--~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~v----Wnv~-------------t--------------- 263 (933)
T KOG1274|consen 219 GWEL--QFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILV----WNVD-------------T--------------- 263 (933)
T ss_pred Ccee--heeecccccccceEEEEEcCCCcE-EeeeccCCcEEE----Eecc-------------c---------------
Confidence 8643 22222211 12 267899999765 777777777653 3322 1
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+..-+....|.+.+|-|+. +.+-..+..|+..+|-
T Consensus 264 -~~~~~~~~~Vc~~aw~p~~--n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 264 -HERHEFKRAVCCEAWKPNA--NAITLITALGTLGVSP 298 (933)
T ss_pred -chhccccceeEEEecCCCC--CeeEEEeeccccccCh
Confidence 0112245678899999998 6777666666665553
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.2e-12 Score=154.52 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=86.2
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
.-++|.|---+|| |++..++ ..+.|-||-- +|+.+.--+ .+-.+.+++|+|.--.+|++=. -..+.+|.
T Consensus 19 ti~SWHPsePlfA-VA~fS~e--r~GSVtIfad-tGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe------~g~~~v~~ 87 (1416)
T KOG3617|consen 19 TISSWHPSEPLFA-VASFSPE--RGGSVTIFAD-TGEPQRDVT-YPVHATSLCWHPEEFVLAQGWE------MGVSDVQK 87 (1416)
T ss_pred cccccCCCCceeE-EEEecCC--CCceEEEEec-CCCCCcccc-cceehhhhccChHHHHHhhccc------cceeEEEe
Confidence 4468999999999 8988775 4578999877 888654322 1223478999999988888754 34678888
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.|..... +.+.++...|.-|.|||||..|.++..-+ .|.+|...
T Consensus 88 ~~~~e~h--tv~~th~a~i~~l~wS~~G~~l~t~d~~g---~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETH--TVVETHPAPIQGLDWSHDGTVLMTLDNPG---SVHLWRYD 131 (1416)
T ss_pred cCCceee--eeccCCCCCceeEEecCCCCeEEEcCCCc---eeEEEEee
Confidence 7743222 44556677899999999999999998888 89999875
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.66 E-value=2.4e-14 Score=153.67 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=177.2
Q ss_pred eEEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 108 ATEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 108 ~~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
-.|+-+.-++.|.+++||| +..+|+.+|.|++|++|.-.-. +.... ..-+.|+..+.+++|+-||.
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~---g~~~~----------ka~~~~~~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS---GQLVP----------KAQQSHDGPVLDVCWSDDGS 85 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecC---Ccccc----------hhhhccCCCeEEEEEccCCc
Confidence 3455566678999999999 5566668889999988753211 01000 01124567889999999998
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC--eEEEEecCCCCCCCCeEEEEeC-CCeeEE
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRKSENKCPSIVFYER-NGLERS 263 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~--~IAs~s~d~~~~~~~~V~~~e~-nGl~~~ 263 (1196)
.++ +++ -|+.+++||..+|+....- .|++.+..+.|=+-.+ .|++||.|+ +|+|||. +-...
T Consensus 86 kVf-~g~------~Dk~~k~wDL~S~Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDK------TlKfWD~R~~~pv- 150 (347)
T KOG0647|consen 86 KVF-SGG------CDKQAKLWDLASGQVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDK------TLKFWDTRSSNPV- 150 (347)
T ss_pred eEE-eec------cCCceEEEEccCCCeeeee-ecccceeEEEEecCCCcceeEeccccc------ceeecccCCCCee-
Confidence 777 565 3689999999999776654 4999999999988887 899999986 5999994 22211
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCC
Q 000992 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g 342 (1196)
+++..| ++|+++ .---.+++++..++ .|.++++.|.--..| .+..+-+.. .+++-.+++.. .++++-.|
T Consensus 151 -~t~~LP--eRvYa~--Dv~~pm~vVata~r---~i~vynL~n~~te~k-~~~SpLk~Q~R~va~f~d~~~-~alGsiEG 220 (347)
T KOG0647|consen 151 -ATLQLP--ERVYAA--DVLYPMAVVATAER---HIAVYNLENPPTEFK-RIESPLKWQTRCVACFQDKDG-FALGSIEG 220 (347)
T ss_pred -eeeecc--ceeeeh--hccCceeEEEecCC---cEEEEEcCCCcchhh-hhcCcccceeeEEEEEecCCc-eEeeeecc
Confidence 223333 234433 22345788898888 799999987531111 111111112 45555555544 25555455
Q ss_pred cEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCC---CEEEEEEecCCCCCEEEEEECCCcEE
Q 000992 343 QITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT---AVTEMAFYSKSSKNCLAAILSDGCLC 418 (1196)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~---~V~~Vafspdg~~~~lAs~~~dg~v~ 418 (1196)
.+.+. .++ +++...=.+|+ |+++-. ..+ .|++|+|+|.- ..|+++++||++.
T Consensus 221 rv~iq----~id----------~~~~~~nFtFk--------CHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 221 RVAIQ----YID----------DPNPKDNFTFK--------CHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSDGTFS 276 (347)
T ss_pred eEEEE----ecC----------CCCccCceeEE--------EeccCCCCCCceEEecceEeeccc--ceEEEecCCceEE
Confidence 44322 111 11100000111 222111 111 47899999987 8999999999999
Q ss_pred EEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEe
Q 000992 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSH 466 (1196)
Q Consensus 419 lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~ 466 (1196)
+||-+....+.+- +.+...+..-+|..+|.++|.+.
T Consensus 277 FWDkdar~kLk~s------------~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 277 FWDKDARTKLKTS------------ETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred Eecchhhhhhhcc------------CcCCCccceeEecCCCCEEEEEe
Confidence 9998764333110 12223566778899999887654
No 112
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.9e-15 Score=169.06 Aligned_cols=308 Identities=14% Similarity=0.133 Sum_probs=201.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCE--EEEEeCCceEEEEeccCc-eee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDL--LGVTTGFGQILVMTHDWD-LLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~--LA~~s~d~tV~l~~~~~d-~~~ 151 (1196)
.+.|++|.-.|-|+.||+|+.||+|++|.+.|+.+--.-..++.|.|++|+|.+.. ||++.++. +.+.+..+- -+.
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLE 478 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhh
Confidence 47899999999999999999999999999999887533335788999999999875 66666654 544432221 111
Q ss_pred ----eeeccccc-----Cccccc-----cCccc-------cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC
Q 000992 152 ----ENPLEELA-----EGFDVH-----EPELS-------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210 (1196)
Q Consensus 152 ----~~~l~~~~-----~~~~Vs-----~tqf~-------~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~ 210 (1196)
...+.... ..+.+. ..|.. .|...|.+++|..+|.|||+|.. + ++.+.|-|.+..
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~-~---~~~~~VliHQLS 554 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP-D---SGNKSVLIHQLS 554 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc-C---CCcceEEEEecc
Confidence 01111110 111111 00111 46778899999999999996543 3 356789999986
Q ss_pred CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEE
Q 000992 211 SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 211 ~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs 289 (1196)
.+..+.-+....|.+..+.|+|.-.++..++. ..|++|+..- ++.+-. .++.-+|.+++.+|.|.-|..
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-------~~vRiYdL~k---qelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-------RSVRIYDLSK---QELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEec-------cceEEEehhH---HHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 66666666667889999999999987777664 3599998531 111000 233457999999999999999
Q ss_pred EEccCCcceEEEEEecC-CEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE
Q 000992 290 VVRFEEYDSVKICFFSN-NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~n-~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1196)
++.|+ .+..+|+.- .+-| +.+..|......|++|+-=|+ ++.++.||.+.++.-. + -+|. -++
T Consensus 625 gs~d~---k~~WfDldlsskPy--k~lr~H~~avr~Va~H~ryPL-fas~sdDgtv~Vfhg~--V-Y~Dl-------~qn 688 (733)
T KOG0650|consen 625 GSYDK---KMCWFDLDLSSKPY--KTLRLHEKAVRSVAFHKRYPL-FASGSDDGTVIVFHGM--V-YNDL-------LQN 688 (733)
T ss_pred ecCCC---eeEEEEcccCcchh--HHhhhhhhhhhhhhhccccce-eeeecCCCcEEEEeee--e-ehhh-------hcC
Confidence 99998 677777651 1111 355566555688999998775 6777777876542211 0 0000 001
Q ss_pred EEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 369 l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
-++-|++. +..+...-.-.|.++.|+|.- -.|.+++.||+|++|.
T Consensus 689 pliVPlK~------L~gH~~~~~~gVLd~~wHP~q--pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 689 PLIVPLKR------LRGHEKTNDLGVLDTIWHPRQ--PWLFSAGADGTIRLFT 733 (733)
T ss_pred CceEeeee------ccCceeecccceEeecccCCC--ceEEecCCCceEEeeC
Confidence 12333321 001111122348899999998 7999999999999983
No 113
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.65 E-value=1.4e-15 Score=164.62 Aligned_cols=275 Identities=12% Similarity=0.090 Sum_probs=193.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.|+-|| .+.+.+++.|+.|..||.+ .... ..+ |.+| .+.|.+++|- .+.|++||+|.||++
T Consensus 199 gVYClQYD--D~kiVSGlrDnTikiWD~n--~~~c-~~~------L~GH----tGSVLCLqyd--~rviisGSSDsTvrv 261 (499)
T KOG0281|consen 199 GVYCLQYD--DEKIVSGLRDNTIKIWDKN--SLEC-LKI------LTGH----TGSVLCLQYD--ERVIVSGSSDSTVRV 261 (499)
T ss_pred ceEEEEec--chhhhcccccCceEEeccc--cHHH-HHh------hhcC----CCcEEeeecc--ceEEEecCCCceEEE
Confidence 56666665 4678888899999999984 2222 112 4555 4789999986 469999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
||.+++++ .+.=+|...|..+.||. .+++++|.|.++.+|... .|......+.. .||-..|..+.
T Consensus 262 WDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~-sps~it~rrVL-----------vGHrAaVNvVd 327 (499)
T KOG0281|consen 262 WDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMA-SPTDITLRRVL-----------VGHRAAVNVVD 327 (499)
T ss_pred EeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEecc-CchHHHHHHHH-----------hhhhhheeeec
Confidence 99999875 34445678899999985 499999999999998532 11111111111 15556677888
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-C
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-G 259 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-G 259 (1196)
|+ .+|++ ++| +|||||+|+..++++..+..+|...+.++.+ .|++++|||.| ++|++||.. |
T Consensus 328 fd--~kyIV-sAS------gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSD------ntIRlwdi~~G 390 (499)
T KOG0281|consen 328 FD--DKYIV-SAS------GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD------NTIRLWDIECG 390 (499)
T ss_pred cc--cceEE-Eec------CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCC------ceEEEEecccc
Confidence 84 56998 465 6899999999999999999999877777655 58999999986 579999953 3
Q ss_pred eeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEE
Q 000992 260 LERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1196)
Q Consensus 260 l~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1196)
. .|+ ..++.-|..|.| |.+.+++|..|+ +|++|+..... .+.. |.+..+|..
T Consensus 391 ~-----cLRvLeGHEeLvRciRF--d~krIVSGaYDG---kikvWdl~aal---------dpra-------~~~~~Cl~~ 444 (499)
T KOG0281|consen 391 A-----CLRVLEGHEELVRCIRF--DNKRIVSGAYDG---KIKVWDLQAAL---------DPRA-------PASTLCLRT 444 (499)
T ss_pred H-----HHHHHhchHHhhhheee--cCceeeeccccc---eEEEEeccccc---------CCcc-------cccchHHHh
Confidence 2 233 234567889998 567899999999 99999987531 0000 112222211
Q ss_pred Ee-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc
Q 000992 338 WT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL 376 (1196)
Q Consensus 338 ~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~ 376 (1196)
.. .+|.+ |...+++..+++...++++++|+|-.
T Consensus 445 lv~hsgRV------FrLQFD~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 445 LVEHSGRV------FRLQFDEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred hhhcccee------EEEeecceEEEeccCCCeEEEEEcCC
Confidence 11 13333 33334566778888888999999853
No 114
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.65 E-value=4.4e-14 Score=149.31 Aligned_cols=295 Identities=13% Similarity=0.050 Sum_probs=198.0
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+.| |+.+|+-+.++.||.+|.+++.|.+..+|= .+++.+-+ .. +|.+.|+++.-.-|.+++.
T Consensus 6 l~G-HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt-----y~-----------GHtGavW~~Did~~s~~li 68 (327)
T KOG0643|consen 6 LQG-HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT-----YD-----------GHTGAVWCCDIDWDSKHLI 68 (327)
T ss_pred ccc-CccccceEEecCCCcEEEEecCCCCceEEEecCCceeee-----ec-----------CCCceEEEEEecCCcceee
Confidence 344 699999999999999999999999998883 24443333 22 6778899999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee----EEE-
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE----RSS- 264 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~----~~~- 264 (1196)
.++ .|.++|+||..+|+.+.+.+ ....+..+.|+++|++++.+.++. ......|-+|+..... ..+
T Consensus 69 -TGS------AD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~-mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 69 -TGS------ADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQ-MGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred -ecc------ccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhh-cCcceEEEEEEccCChhhhcccCc
Confidence 576 46899999999999999887 556789999999999998887653 2234567788743111 111
Q ss_pred -EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCc
Q 000992 265 -FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 265 -f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
..++.+ +..+...-|+|-|+.|.++.+++ .|.+||..|..- +.+....|......+.++|+... +..++.
T Consensus 140 ~~kI~t~-~skit~a~Wg~l~~~ii~Ghe~G---~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~--- 210 (327)
T KOG0643|consen 140 YLKIPTP-DSKITSALWGPLGETIIAGHEDG---SISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSK--- 210 (327)
T ss_pred eEEecCC-ccceeeeeecccCCEEEEecCCC---cEEEEEcccCce-eeechhhhccccccccccCCcce-EEeccc---
Confidence 123333 46799999999999999999999 899999998642 23333333333366777777643 222221
Q ss_pred EEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+.+-+++++. .-++.++.....||++.|++|-. ..+..++...-.-+-...
T Consensus 211 ----------------------Dttakl~D~~-----tl~v~Kty~te~PvN~aaisP~~--d~VilgGGqeA~dVTTT~ 261 (327)
T KOG0643|consen 211 ----------------------DTTAKLVDVR-----TLEVLKTYTTERPVNTAAISPLL--DHVILGGGQEAMDVTTTS 261 (327)
T ss_pred ----------------------Cccceeeecc-----ceeeEEEeeecccccceeccccc--ceEEecCCceeeeeeeec
Confidence 1233333332 12344566678899999999987 555555433222222211
Q ss_pred CCCccccccCCceeee-------eec--ccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 424 APDMLEDLEGTEFVVE-------ACI--SETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 424 ~~~~~~~~~g~~~~~~-------~~~--~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+ ..|+ |..- ..+ ..+|.+.+..++|+|+|+..++++-+ ..+.++.+
T Consensus 262 ~------r~GK-FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED--G~VR~h~F 316 (327)
T KOG0643|consen 262 T------RAGK-FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED--GYVRLHHF 316 (327)
T ss_pred c------cccc-hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC--ceEEEEEe
Confidence 1 1221 1100 011 14678899999999999988876554 56666655
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=1.8e-14 Score=154.62 Aligned_cols=246 Identities=10% Similarity=0.071 Sum_probs=178.7
Q ss_pred cceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 21 EILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 21 ~~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
+.+.+++|.|..+.+.+++. |+.+..|++. ..+.. .|....++ .+.|.++.|+-||..+.+|+.||.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq-~~g~~------~~ka~~~~----~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQ-NSGQL------VPKAQQSH----DGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEe-cCCcc------cchhhhcc----CCCeEEEEEccCCceEEeeccCCce
Confidence 38999999998887887755 9999999983 11211 11112222 4789999999999999999999999
Q ss_pred EEEECCCCeEEEeeeecCcEEEEEECCCCC--EEEEEeCCceEEEEe-ccCceeeeeeccccc--------------Ccc
Q 000992 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGD--LLGVTTGFGQILVMT-HDWDLLYENPLEELA--------------EGF 162 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDg~--~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~--------------~~~ 162 (1196)
++||+.+++...+|.|+++|.++.|=+-.. .|++||.|+||+.|+ |.-.++..+.+..-- ...
T Consensus 97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 999999999999999999999999977665 899999999999986 655666655443221 011
Q ss_pred cc---c----cCcccc----CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--------cEEEEeccCC-
Q 000992 163 DV---H----EPELSS----SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--------TLQASSELKA- 222 (1196)
Q Consensus 163 ~V---s----~tqf~~----~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--------~l~~~~e~~~- 222 (1196)
+| + .++|+. -.-.+.+|+-..|++-+| +++++ +.+-|...+.+ ++++...+..
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a-lGsiE------Grv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA-LGSIE------GRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE-eeeec------ceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 11 1 344552 233578999999999889 89864 56667666555 2333222222
Q ss_pred --CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000992 223 --FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 223 --~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
..|++|+|.|.-..||+++.|+ +..|||++-. +.-++. ..+...|..-+||.+|.++|-+..
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDG------tf~FWDkdar-~kLk~s-~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDG------TFSFWDKDAR-TKLKTS-ETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceEEecceEeecccceEEEecCCc------eEEEecchhh-hhhhcc-CcCCCccceeEecCCCCEEEEEee
Confidence 2478999999999999998864 6999998642 221111 234567999999999999998864
No 116
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.9e-15 Score=178.22 Aligned_cols=218 Identities=14% Similarity=0.064 Sum_probs=135.9
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~ 151 (1196)
..+.+..|||||+.|+.++.+ .+|.+||..+++...+....+...+++|||||+.||+++ .+|.+.+|..+-+.-.
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 468999999999999988754 369999999876554444445566899999999999875 5777766632211000
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slaw 230 (1196)
...+. .+...+..++|+|||+.+++++. .++..+||+.+ .|...... .+.+ ..++|
T Consensus 284 ~~~lt--------------~~~~~~~~~~wSpDG~~i~f~s~------~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~ 340 (429)
T PRK01742 284 PSQLT--------------SGAGNNTEPSWSPDGQSILFTSD------RSGSPQVYRMSASGGGASLV-GGRG--YSAQI 340 (429)
T ss_pred eEeec--------------cCCCCcCCEEECCCCCEEEEEEC------CCCCceEEEEECCCCCeEEe-cCCC--CCccC
Confidence 01111 12234578999999998884332 23456666542 23222222 2333 46789
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
||||+.||.++.+ .+..|+..+..... +..+ ....+++|||||+.|+.++.++ .+++|.+-+....
T Consensus 341 SpDG~~ia~~~~~-------~i~~~Dl~~g~~~~--lt~~--~~~~~~~~sPdG~~i~~~s~~g---~~~~l~~~~~~G~ 406 (429)
T PRK01742 341 SADGKTLVMINGD-------NVVKQDLTSGSTEV--LSST--FLDESPSISPNGIMIIYSSTQG---LGKVLQLVSADGR 406 (429)
T ss_pred CCCCCEEEEEcCC-------CEEEEECCCCCeEE--ecCC--CCCCCceECCCCCEEEEEEcCC---CceEEEEEECCCC
Confidence 9999999988753 35667754322111 2111 1245789999999999999887 5666664322222
Q ss_pred EEEEEEEecCCcEEEEEccC
Q 000992 311 LKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~ 330 (1196)
..+.+..+........|||-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 34455433222366788874
No 117
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.64 E-value=3.6e-15 Score=165.46 Aligned_cols=264 Identities=13% Similarity=0.081 Sum_probs=186.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..+.|=..+++++.+..|..|..|+. .....+ .+.+ |.+- .+.|+++.|-+++..+..++.|++.++
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v--~~~k~~-~~~t----LaGs----~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNV--LGEKSE-LIST----LAGS----LGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhc--ccchhh-hhhh----hhcc----CCCcceeeecCCCceEEeecCCCceee
Confidence 5666778888899999988888999998 333321 2232 3322 467999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
||.+..+. ..+..|.+.|+++.|.-+...+++++.|.+|++ ||.-...+..+.- .+ ..+..|.
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~----WDl~k~~C~kt~l----------~~--S~cnDI~ 309 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL----WDLQKAYCSKTVL----------PG--SQCNDIV 309 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhh----hhhhhhheecccc----------cc--ccccceE
Confidence 99998655 344448999999999999888999999999965 5544444333211 00 1122333
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
-+ +..++ |++ .|++||.||...+.+...-+ ..|.+.++..+++|..|.++++|. ++.+++..+.
T Consensus 310 ~~--~~~~~--SgH-----~DkkvRfwD~Rs~~~~~sv~-~gg~vtSl~ls~~g~~lLsssRDd------tl~viDlRt~ 373 (459)
T KOG0288|consen 310 CS--ISDVI--SGH-----FDKKVRFWDIRSADKTRSVP-LGGRVTSLDLSMDGLELLSSSRDD------TLKVIDLRTK 373 (459)
T ss_pred ec--ceeee--ecc-----cccceEEEeccCCceeeEee-cCcceeeEeeccCCeEEeeecCCC------ceeeeecccc
Confidence 33 33444 343 46889999965777777655 456899999999999999988864 5777875443
Q ss_pred eE-EEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC--cEEEEEccCCCc
Q 000992 261 ER-SSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPL 333 (1196)
Q Consensus 261 ~~-~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~--~~~v~Wsp~~~~ 333 (1196)
.. +.|.-.+ .-...+..+.|||||.++|.|+.|+ .|.||++.+.+. -..+..+... ++++.|+|.|..
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg---sv~iW~v~tgKl--E~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG---SVYIWSVFTGKL--EKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCC---cEEEEEccCceE--EEEeccCCCCcceEEEEEcCCCch
Confidence 32 2222111 0122478899999999999999999 999999988753 1222222222 388999998865
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=6.7e-15 Score=170.83 Aligned_cols=251 Identities=13% Similarity=0.068 Sum_probs=188.2
Q ss_pred eeecCCCE-EEEEeCCCcEEEEeccccccc-ccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 27 ALDIEQNR-LFFASSANNIYSAQLSSFQNE-RASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 27 ~~d~~~~~-l~~~s~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
-.|.-++. ||+++-|+.|+.|+.+...++ .+.-+.+ +..| .++|.++..--+|+.|+++|.|-+|++|+.
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~as----me~H----sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIAS----MEHH----SDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhh----hhhh----HhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 35655555 999999999999998411111 1100111 3333 479999999999999999999999999998
Q ss_pred CCC---eEEEeeeecCcEEEEEE-CCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 105 DGN---ATEVVGRVEGGVRFISP-SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 105 ~~~---~~e~vg~~~~~I~~~aw-SPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
..+ -+.++|.|++.|.|++. -++.+++|+|+-|+.|.+|+.. ...+...+... ...++.+ -.++.+++.+++
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin--~~~~~l~~s~n-~~t~~sl-~sG~k~siYSLA 178 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN--TGTATLVASFN-NVTVNSL-GSGPKDSIYSLA 178 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc--Ccchhhhhhcc-ccccccC-CCCCccceeeee
Confidence 754 23588999999999999 9999999999999999998643 11111111111 0011000 015667899999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
=.+.|..|+ .|+ -.+.+|+||..+++-...+.+|..-|..|--++||+.+.|+|.|+ +|++|+.+ .
T Consensus 179 ~N~t~t~iv-sGg------tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg------tIrlWdLg-q 244 (735)
T KOG0308|consen 179 MNQTGTIIV-SGG------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG------TIRLWDLG-Q 244 (735)
T ss_pred cCCcceEEE-ecC------cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc------eEEeeecc-c
Confidence 999997777 454 248899999999999999999999999999999999999999975 69999985 3
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
++-.+++..|. ..|+++.-||+=+.+-+|+.|+ .|..=++.|+
T Consensus 245 QrCl~T~~vH~-e~VWaL~~~~sf~~vYsG~rd~---~i~~Tdl~n~ 287 (735)
T KOG0308|consen 245 QRCLATYIVHK-EGVWALQSSPSFTHVYSGGRDG---NIYRTDLRNP 287 (735)
T ss_pred cceeeeEEecc-CceEEEeeCCCcceEEecCCCC---cEEecccCCc
Confidence 44445555553 4599999999999999999999 7777777775
No 119
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.64 E-value=1.4e-15 Score=164.64 Aligned_cols=272 Identities=14% Similarity=0.192 Sum_probs=187.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
...|.+++|- .+.+++|+.|.||++||.++..+. ++-+|.+.|.|+.+ |.+.|++||.|.||++|+ .-++.
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWD----v~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWD----VNTGE 268 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEe----ccCCc
Confidence 4679999884 678999999999999999986653 44457999999998 567999999999999875 22333
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEEEE
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~slaw 230 (1196)
++.+.- +|.+.|..+.|+ +| |++| +| .|++++|||...- .+...+-+|...|+.+.|
T Consensus 269 ~l~tli-----------hHceaVLhlrf~-ng-~mvt-cS------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf 328 (499)
T KOG0281|consen 269 PLNTLI-----------HHCEAVLHLRFS-NG-YMVT-CS------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 328 (499)
T ss_pred hhhHHh-----------hhcceeEEEEEe-CC-EEEE-ec------CCceeEEEeccCchHHHHHHHHhhhhhheeeecc
Confidence 333222 455677888887 34 5663 44 4799999998322 222345578888999998
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE--eccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD--INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~--l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+.. +|+|+|.|. +|+.|+.. .++|. +.++ ...|-.+.+ .|+++++|++|. ||+||+...+.
T Consensus 329 d~k--yIVsASgDR------TikvW~~s---t~efvRtl~gH-kRGIAClQY--r~rlvVSGSSDn---tIRlwdi~~G~ 391 (499)
T KOG0281|consen 329 DDK--YIVSASGDR------TIKVWSTS---TCEFVRTLNGH-KRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGA 391 (499)
T ss_pred ccc--eEEEecCCc------eEEEEecc---ceeeehhhhcc-cccceehhc--cCeEEEecCCCc---eEEEEeccccH
Confidence 654 999999864 69999965 45553 2233 234555544 689999999999 99999988654
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC----CCce
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP----PPMY 384 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp----ppm~ 384 (1196)
. -..+..|..-..++.|+.+ ++..+.-|| ++++|+|..+.-| ..+|
T Consensus 392 c--LRvLeGHEeLvRciRFd~k---rIVSGaYDG-------------------------kikvWdl~aaldpra~~~~~C 441 (499)
T KOG0281|consen 392 C--LRVLEGHEELVRCIRFDNK---RIVSGAYDG-------------------------KIKVWDLQAALDPRAPASTLC 441 (499)
T ss_pred H--HHHHhchHHhhhheeecCc---eeeeccccc-------------------------eEEEEecccccCCcccccchH
Confidence 2 1233333322355556542 233332233 4566666554443 2355
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..++ +|.+.|..+-|-. ..+.+.++|.+|-+|++.+.
T Consensus 442 l~~lv~hsgRVFrLQFD~----fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 442 LRTLVEHSGRVFRLQFDE----FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred HHhhhhccceeEEEeecc----eEEEeccCCCeEEEEEcCCC
Confidence 5555 6888999888764 57888889999999999753
No 120
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=7.4e-14 Score=145.15 Aligned_cols=267 Identities=9% Similarity=0.003 Sum_probs=195.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+.-|+.||+-...|..|..+..|++ -.+.. |.| ..+| +..|.+++-+.|...+|+++.|..|.+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp--~rg~l---ikt----Ysgh----G~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNP--LRGAL---IKT----YSGH----GHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecc--cccce---eee----ecCC----CceeeeccccccccccccCCCCceEEE
Confidence 6888899999999999999999999998 44433 232 3445 458999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe---ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~---~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
||.+||++ ...+.|.+.|++++|+-+...+++++-|.++++|+ +.++|+.-.. ...++|.
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild----------------ea~D~V~ 149 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD----------------EAKDGVS 149 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh----------------hhcCcee
Confidence 99999876 46777899999999999999999999999999996 4455542211 1235677
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+|.-.. .-++ .+|+ |+++|.||...|++.+-. ...++++++|||||+....++-+ .++++.++
T Consensus 150 Si~v~~--heIv-aGS~------DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~------stlrLlDk 212 (307)
T KOG0316|consen 150 SIDVAE--HEIV-AGSV------DGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLD------STLRLLDK 212 (307)
T ss_pred EEEecc--cEEE-eecc------CCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeecc------ceeeeccc
Confidence 777653 3344 3553 689999999889876533 34568999999999988777775 46999986
Q ss_pred C-CeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-cEEEEEccCCCce
Q 000992 258 N-GLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-GIRFMWHPTKPLQ 334 (1196)
Q Consensus 258 n-Gl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~~~v~Wsp~~~~~ 334 (1196)
. |...+.+. ++. ...=...+++..-+.++++++|+ .|.+|++-+.+-..|- ..+..- ...+.+||..+.
T Consensus 213 ~tGklL~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG---~Vy~wdLvd~~~~sk~--~~~~~v~v~dl~~hp~~~~- 284 (307)
T KOG0316|consen 213 ETGKLLKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDG---KVYFWDLVDETQISKL--SVVSTVIVTDLSCHPTMDD- 284 (307)
T ss_pred chhHHHHHhc--ccccceeeeeeeecccceeEEeccCCc---eEEEEEeccceeeeee--ccCCceeEEeeecccCccc-
Confidence 4 43322221 111 11123567788888999999999 8999999987643322 222111 267899998765
Q ss_pred EEEEecCC
Q 000992 335 LICWTLDG 342 (1196)
Q Consensus 335 L~~~~~~g 342 (1196)
+++.+..+
T Consensus 285 f~~A~~~~ 292 (307)
T KOG0316|consen 285 FITATGHG 292 (307)
T ss_pred eeEecCCc
Confidence 66665433
No 121
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.2e-15 Score=154.26 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=171.8
Q ss_pred CCCEEEEEEccCC-CEEEEEECCCcEEEEECCC--CeEEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCcee
Q 000992 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDG--NATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 75 ~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~--~~~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
.+.+-+|+|++.- .++++++.||.++|||..- +.+.+...|...|.++-|++- ++.+++.|-|+||++|.. .
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~----~ 135 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP----N 135 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC----C
Confidence 5789999999976 4677889999999999542 445567778999999999985 566777789999988753 2
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVL 228 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~sl 228 (1196)
....+ ..|.+|.+.|....||| ++..|| +.| +|+++|+||.+ .|+.+. .+.|...+-+.
T Consensus 136 r~~Sv-----------~Tf~gh~~~Iy~a~~sp~~~nlfa-s~S------gd~~l~lwdvr~~gk~~~-i~ah~~Eil~c 196 (311)
T KOG0277|consen 136 RPNSV-----------QTFNGHNSCIYQAAFSPHIPNLFA-SAS------GDGTLRLWDVRSPGKFMS-IEAHNSEILCC 196 (311)
T ss_pred CCcce-----------EeecCCccEEEEEecCCCCCCeEE-Ecc------CCceEEEEEecCCCceeE-EEeccceeEee
Confidence 22222 23668889999999999 566788 444 57999999975 577766 67788788999
Q ss_pred EEcCC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecC
Q 000992 229 EWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 229 awsPd-G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.|+.- -+++|+++.| ..|+.|+...++.-.|.|.+ ++-.|..|.|||-. .+||+++.|- |++||+...
T Consensus 197 dw~ky~~~vl~Tg~vd------~~vr~wDir~~r~pl~eL~g-h~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~~~ 266 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVD------NLVRGWDIRNLRTPLFELNG-HGLAVRKVKFSPHHASLLASASYDM---TVRIWDPER 266 (311)
T ss_pred cccccCCcEEEecCCC------ceEEEEehhhccccceeecC-CceEEEEEecCcchhhHhhhccccc---eEEeccccc
Confidence 99985 4677888775 46999997666666677754 35679999999964 6999999999 999999763
Q ss_pred CEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcE
Q 000992 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
.+- ++....-|......+.|++-.+..++....|+.+
T Consensus 267 ~ds-~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 267 QDS-AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred chh-hhhhhhccceEEeccccccccCceeeecccccce
Confidence 321 1111111111124577888766555544444444
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.63 E-value=2.9e-15 Score=163.74 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=189.5
Q ss_pred CCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
.++|.+++=+|.. ..+++|+.||.|+|||.....+ .....|.|-|..++++- +...+++.|++|+.|..+..++..
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~t 143 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHT 143 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCccee
Confidence 3788899989987 7899999999999999988654 36777899999999987 788999999999999877655544
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
+.... .+..|.=.--+..||| ++ ..|-|||.+--..++.+.-....+.++.|+|
T Consensus 144 ilg~s-----------------~~~gIdh~~~~~~FaT-cG--------e~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 144 ILGKS-----------------VYLGIDHHRKNSVFAT-CG--------EQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred eeccc-----------------cccccccccccccccc-cC--------ceeeecccccCCccceeecCCCceeEEecCC
Confidence 33221 2233443344556884 33 5799999865556666655555679999999
Q ss_pred CCC-eEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 233 SGA-NIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 233 dG~-~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
--. .||++..|. .|++|| |.+.......+. -.-+.|+|||.+-...++.+|- .+..+|+.+.+
T Consensus 198 vETsILas~~sDr------sIvLyD~R~~~Pl~KVi~~----mRTN~IswnPeafnF~~a~ED~---nlY~~DmR~l~-- 262 (433)
T KOG0268|consen 198 VETSILASCASDR------SIVLYDLRQASPLKKVILT----MRTNTICWNPEAFNFVAANEDH---NLYTYDMRNLS-- 262 (433)
T ss_pred CcchheeeeccCC------ceEEEecccCCccceeeee----ccccceecCccccceeeccccc---cceehhhhhhc--
Confidence 764 678776654 588998 333322222222 2356899999999999999998 89999988754
Q ss_pred EEEEEEEecC---CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 311 LKYEIRYLRR---DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 311 lkq~l~~~~~---~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
..+..+.+ ....+.|||.|.. +..++-|-++ ++.+.+.. -.+.
T Consensus 263 --~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksI-------------------------RIf~~~~~------~SRd 308 (433)
T KOG0268|consen 263 --RPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSI-------------------------RIFPVNHG------HSRD 308 (433)
T ss_pred --ccchhhcccceeEEEeccCCCcch-hccccccceE-------------------------EEeecCCC------cchh
Confidence 33333322 2378899998865 4444433333 33333211 0111
Q ss_pred ecCC---CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000992 388 LKFP---TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 388 l~~~---~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~ 426 (1196)
+-|. ..|.+|.||.|. +.+.+||.|+.|+||.....+
T Consensus 309 iYhtkRMq~V~~Vk~S~Ds--kyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYSMDS--KYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhhHhhhheeeEEEEeccc--cEEEecCCCcceeeeecchhh
Confidence 2221 258999999999 999999999999999986543
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.3e-14 Score=158.14 Aligned_cols=289 Identities=13% Similarity=0.057 Sum_probs=187.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEee---eecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCcee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
.+.|++|+|+|..+.|.+|+-||+++||.++++.-+.+. -...+|.+++|.|+|+ .++++|.-.-+.. ||..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys----yDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS----YDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE----eecc
Confidence 578999999999999999999999999999885322222 2246899999999999 6666555554544 4433
Q ss_pred eee--ecccccCccccccCccccC-CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 151 YEN--PLEELAEGFDVHEPELSSS-FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 151 ~~~--~l~~~~~~~~Vs~tqf~~~-~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
+.. .+++.- ++ ...+....-|+||+|+| ..+ ..+.|.+-...+++++.++. ..|.+..
T Consensus 289 ~ak~~k~~~~~-----------g~e~~~~e~FeVShd~~fia-~~G------~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 289 TAKVTKLKPPY-----------GVEEKSMERFEVSHDSNFIA-IAG------NNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred ccccccccCCC-----------CcccchhheeEecCCCCeEE-Ecc------cCceEEeehhhhhhhhheee-eccEEee
Confidence 221 111111 11 12345677899999999 665 35789999888999888776 6788999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
+.|+.||+.|.+++.+ ..|.+|+.+-. +-.......+...-.+++-|++|.+||+|+..| .|-||+.++.
T Consensus 350 ~~fsSdsk~l~~~~~~------GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G---iVNIYd~~s~ 419 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGT------GEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG---IVNIYDGNSC 419 (514)
T ss_pred EEEecCCcEEEEEcCC------ceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcc---eEEEeccchh
Confidence 9999999987766654 46999986532 111111112222345789999999999999999 9999997642
Q ss_pred EEE-EEEEEE-Eec--CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc
Q 000992 308 HWY-LKYEIR-YLR--RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1196)
Q Consensus 308 ~wy-lkq~l~-~~~--~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm 383 (1196)
.-- -.+.+. +.. ..+.++.|+|++.. |++.+. +.-.....+.- |+ .|-|+-| |++-
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi-LAiaS~-~~knalrLVHv--PS--------------~TVFsNf--P~~n 479 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQI-LAIASR-VKKNALRLVHV--PS--------------CTVFSNF--PTSN 479 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhh-hhhhhh-ccccceEEEec--cc--------------eeeeccC--CCCC
Confidence 100 000000 000 12367889998764 555542 11111111111 00 1223322 3221
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.. -+.|.||+|||.| ..||+|..+|.|.||.+.
T Consensus 480 --~~---vg~vtc~aFSP~s--G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 --TK---VGHVTCMAFSPNS--GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --Cc---ccceEEEEecCCC--ceEEeecCCCceeeEeec
Confidence 11 1458999999988 799999999999999874
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.63 E-value=3.7e-14 Score=165.94 Aligned_cols=255 Identities=14% Similarity=0.087 Sum_probs=192.2
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEE-EEEcc-CCCEEEEEECCCcEEEEECCCCeE
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITA-FDYLM-EKEALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~-v~~sp-d~~~La~as~dG~I~lw~~~~~~~ 109 (1196)
-.+.++|.|+.+..|.. -.++- +..+++. |.+.|.. +.|.+ |+-.|++|+.|++|.+|.+.+...
T Consensus 26 ~~i~s~sRd~t~~vw~~--~~~~~----------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P 93 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAK--KGKQY----------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP 93 (745)
T ss_pred eEEeecCCCCceeeeec--cCccc----------ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCc
Confidence 35667777888888987 22221 2223343 3455655 88885 556799999999999999988643
Q ss_pred -EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 110 -EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 110 -e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.++-.|+..|.|++---|+. |+++|.|.|+++|. ..+..... ++|...|+.+..-|++.|+
T Consensus 94 ~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~-~~~l~~~l----------------~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 94 LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR-IGELVYSL----------------QGHTASVWAVASLPENTYV 155 (745)
T ss_pred hhhhhccccceeeeecCCcCc-eEecccccceEEec-chhhhccc----------------CCcchheeeeeecCCCcEE
Confidence 45555799999999998987 99999999999994 33443332 2677789999999999554
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1196)
+++ .|++||+|.- |++++++.+|..-|+.++.=|++. ++|++.| ..|++|+..|....+ ..
T Consensus 156 --Tgs------aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsND------g~Ir~w~~~ge~l~~--~~ 216 (745)
T KOG0301|consen 156 --TGS------ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSND------GSIRLWDLDGEVLLE--MH 216 (745)
T ss_pred --ecc------CcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCC------ceEEEEeccCceeee--ee
Confidence 365 4799999986 889999999999999999999976 5566665 469999987754332 12
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
.+++.|++++-.++++.++++++|+ +++||.... +.|.|..+..+.+++..=+.|. +.+++.||.+++
T Consensus 217 -ghtn~vYsis~~~~~~~Ivs~gEDr---tlriW~~~e----~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 217 -GHTNFVYSISMALSDGLIVSTGEDR---TLRIWKKDE----CVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRV 284 (745)
T ss_pred -ccceEEEEEEecCCCCeEEEecCCc---eEEEeecCc----eEEEEecCccceEEEEEeeCCC--EEEeccCceEEE
Confidence 2467899999999999999999999 999999883 6788887665655554444454 678888887653
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.7e-14 Score=159.40 Aligned_cols=277 Identities=13% Similarity=0.166 Sum_probs=195.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~dG~I~ 100 (1196)
.++++-|-+-.-.|.++.-|+.+..+++..-.+..-..+. |..+ .|....|.|+|. .+++++...-..
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-----l~~f------Pi~~a~f~p~G~~~i~~s~rrky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-----LEKF------PIQKAEFAPNGHSVIFTSGRRKYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-----eccC------ccceeeecCCCceEEEecccceEEE
Confidence 7888899998899999988886555555212222211121 3433 578899999999 788888777788
Q ss_pred EEECCCCeEE----EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCC
Q 000992 101 LHSVDGNATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 101 lw~~~~~~~e----~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.||+.+.++. ..|.-+..+.....||||++||+++..|-|.+.. +..+.+....+. +.
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-----------------G~ 346 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-----------------GV 346 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-----------------cE
Confidence 8999987654 2343345788999999999999999999998874 444444444432 45
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc--eeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM--GAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~--v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
+..+.|+.||+.|. +++ +++.|.|||...-.++..+.. +|. -.+++-|++|.++|+||. .+.|-
T Consensus 347 v~~~~fsSdsk~l~-~~~------~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~------~GiVN 412 (514)
T KOG2055|consen 347 VSDFTFSSDSKELL-ASG------GTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSD------SGIVN 412 (514)
T ss_pred EeeEEEecCCcEEE-EEc------CCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccC------cceEE
Confidence 68999999999887 443 468999999977777777642 222 268888999999999997 45788
Q ss_pred EEeCCCeeEEEEEeccC------CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC-----Cc
Q 000992 254 FYERNGLERSSFDINEQ------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR-----DG 322 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~-----~~ 322 (1196)
+|+.|.-..+. -|.| ....|.+|+||||+++||+++.-. .+.++|-++....-|- .|+.. .+
T Consensus 413 IYd~~s~~~s~--~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~-knalrLVHvPS~TVFs----NfP~~n~~vg~v 485 (514)
T KOG2055|consen 413 IYDGNSCFAST--NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK-KNALRLVHVPSCTVFS----NFPTSNTKVGHV 485 (514)
T ss_pred EeccchhhccC--CCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc-ccceEEEeccceeeec----cCCCCCCcccce
Confidence 99866432221 1111 124699999999999999998764 3468888776432110 12221 12
Q ss_pred EEEEEccCCCceEEEEecCCcEEEEE
Q 000992 323 IRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
+++.|||.++. +++++..|++..+.
T Consensus 486 tc~aFSP~sG~-lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 486 TCMAFSPNSGY-LAVGNEAGRVHLFK 510 (514)
T ss_pred EEEEecCCCce-EEeecCCCceeeEe
Confidence 88999998887 88998888876443
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.63 E-value=1.2e-14 Score=163.75 Aligned_cols=263 Identities=13% Similarity=0.168 Sum_probs=185.8
Q ss_pred CCCCEEEEEEccCCC-EEEEEECCCcEEEEECCC--------Ce----EEEeeeecCcEEEEEECCCCC-EEEEEeCCce
Q 000992 74 PGDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG--------NA----TEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQ 139 (1196)
Q Consensus 74 ~~~~v~~v~~spd~~-~La~as~dG~I~lw~~~~--------~~----~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~t 139 (1196)
..+.|+.+.|.|... .+|+.+.+|+|.|||... +. +.+.|| ++.=..++||+..+ .|++++.|++
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEee-cccccccccccccceeEeeccCCCc
Confidence 357788888988764 566778999999999753 11 235665 44447799999865 6888899999
Q ss_pred EEEEeccCceeeeeecccccCccccc-cCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECC--CCcEE
Q 000992 140 ILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERD--SGTLQ 215 (1196)
Q Consensus 140 V~l~~~~~d~~~~~~l~~~~~~~~Vs-~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~--~G~l~ 215 (1196)
|.+|+..-.... .+.+. -+-|++|.+.|..++|.+--+ .|++|+ .|+.+.|||.+ +-+..
T Consensus 202 i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~-------dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 202 ICLWDINAESKE---------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG-------DDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred EEEEeccccccC---------CccccceEEeecCCcceehhhccccchhhheeec-------CCCeEEEEEcCCCCCCCc
Confidence 998864322111 11111 234778999999999999665 555332 47999999987 44555
Q ss_pred EEeccCCCceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEcc
Q 000992 216 ASSELKAFMGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRF 293 (1196)
Q Consensus 216 ~~~e~~~~~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d 293 (1196)
.+-++|++.+++++|+|- +.+||++|.|+ +|.+|++..+.+.-.++.. +...|..|.|||.- ++||+.+.|
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~------tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADK------TVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCC------cEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccC
Confidence 666789999999999995 56789999875 6999997555543233333 45689999999974 689999999
Q ss_pred CCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee
Q 000992 294 EEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
+ .+.+||++.-. + .. + |+..
T Consensus 339 ~---rl~vWDls~ig-----~------eq-~----~eda----------------------------------------- 358 (422)
T KOG0264|consen 339 R---RLNVWDLSRIG-----E------EQ-S----PEDA----------------------------------------- 358 (422)
T ss_pred C---cEEEEeccccc-----c------cc-C----hhhh-----------------------------------------
Confidence 9 99999987411 0 00 0 1100
Q ss_pred ccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 374 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 374 l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
..-||-+-+..-+|.+.|.+.+|+|... -.+||++.|+.++||+...
T Consensus 359 ---~dgppEllF~HgGH~~kV~DfsWnp~eP-W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 359 ---EDGPPELLFIHGGHTAKVSDFSWNPNEP-WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ---ccCCcceeEEecCcccccccccCCCCCC-eEEEEecCCceEEEeeccc
Confidence 0113333333335778899999999874 6799999999999999873
No 127
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.2e-13 Score=146.63 Aligned_cols=286 Identities=12% Similarity=0.044 Sum_probs=188.4
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFC 195 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d 195 (1196)
.+.|+++.||+||+.|++++.|.++++.+ ...+..++... .+.-++-.+.|--....+. .|+-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd----~~~g~~~~ti~-----------skkyG~~~~~Fth~~~~~i-~sSt- 76 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYD----SLSGKQVKTIN-----------SKKYGVDLACFTHHSNTVI-HSST- 76 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEE----cCCCceeeEee-----------cccccccEEEEecCCceEE-EccC-
Confidence 46799999999999999999999998865 23333322221 1112455677765555555 3432
Q ss_pred cccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCc
Q 000992 196 NSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDST 274 (1196)
Q Consensus 196 ~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~ 274 (1196)
..|.+||.-+..+.+.++.+.+|...|.+|+-+|-+....|++.|+ +|++|+..-.. .|-..+..
T Consensus 77 ---k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~------tvrLWDlR~~~cqg~l~~~~----- 142 (311)
T KOG1446|consen 77 ---KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK------TVRLWDLRVKKCQGLLNLSG----- 142 (311)
T ss_pred ---CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCC------eEEeeEecCCCCceEEecCC-----
Confidence 2578999999999999999999999999999999999999999975 69999954221 12111211
Q ss_pred EEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe--cCCc-EEEEEccCCCceEEEEecCCcEEEEEEEE
Q 000992 275 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL--RRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIW 351 (1196)
Q Consensus 275 V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~--~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~ 351 (1196)
-.-.||.|.|-++|++.... .|+|+|+..+.---.+.+... .... ..+.|||+|.. +.+.+..+.+...
T Consensus 143 ~pi~AfDp~GLifA~~~~~~---~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~l---- 214 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALANGSE---LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLL---- 214 (311)
T ss_pred CcceeECCCCcEEEEecCCC---eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEE----
Confidence 22589999999999999886 799999987632111222222 1122 77999999975 5555554433221
Q ss_pred eeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccc
Q 000992 352 TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431 (1196)
Q Consensus 352 ~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~ 431 (1196)
-+.+|. + +..|.. +.-...-+ .+.+|+||+ +.+.+++.||+|.+|+..++.....+
T Consensus 215 ----------DAf~G~-~-~~tfs~---------~~~~~~~~-~~a~ftPds--~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 215 ----------DAFDGT-V-KSTFSG---------YPNAGNLP-LSATFTPDS--KFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred ----------EccCCc-E-eeeEee---------ccCCCCcc-eeEEECCCC--cEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 122443 1 112211 00001111 577899999 89999999999999999876555444
Q ss_pred cCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 432 EGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 432 ~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.|+ ....+..+.|.|--..+++++ +.+.+|...
T Consensus 271 ~~~-----------~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~ 303 (311)
T KOG1446|consen 271 RGP-----------NGGPVSCVRFNPRYAMFVSAS----SNLVFWLPD 303 (311)
T ss_pred cCC-----------CCCCccccccCCceeeeeecC----ceEEEEecc
Confidence 442 123455566888766666543 577788663
No 128
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.62 E-value=5.7e-14 Score=156.73 Aligned_cols=255 Identities=11% Similarity=0.108 Sum_probs=183.7
Q ss_pred ccceecccccccccccCccc--ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEE
Q 000992 2 NNLKLCAEVPLNLELQSKDE--ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSIT 79 (1196)
Q Consensus 2 rNL~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 79 (1196)
+|+++++...-++-...+|. .|+...+.++.+.+..+|.|..|+.|... .... ..+ ++-| ...|+
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~--~~s~-~~~------~~~h----~~~V~ 307 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVP--LSSE-PTS------SRPH----EEPVT 307 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccc--cccC-ccc------cccc----cccce
Confidence 35556554443432233343 68888999999999999999999999984 2211 111 2222 46899
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeec---CcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeec
Q 000992 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVE---GGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPL 155 (1196)
Q Consensus 80 ~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~---~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l 155 (1196)
.++-+|.|++|.+++.||++...|..++..-++-.++ -.+.+++|.|||-++++++.|+.|++|+. ..+.
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~------ 381 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN------ 381 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc------
Confidence 9999999999999999999999999988765544443 45999999999999999999999998752 2111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSG 234 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG 234 (1196)
...|.+|...|..|+|+-+|.|+| ++. +|+.|++||.+.-+...+..-.+ ..+.+++|-++|
T Consensus 382 ----------~a~Fpght~~vk~i~FsENGY~La-t~a------dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 382 ----------VAKFPGHTGPVKAISFSENGYWLA-TAA------DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred ----------cccCCCCCCceeEEEeccCceEEE-EEe------cCCeEEEEEehhhcccceeeccccccceeEEEcCCC
Confidence 135668889999999999999999 675 45779999986666555553222 257899999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW 302 (1196)
.+++.++.+ ..|-.+.+....-.+. .+.. +.+....+.|..+-++||+++-|. ..+++
T Consensus 445 t~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~-~sg~st~v~Fg~~aq~l~s~smd~---~l~~~ 503 (506)
T KOG0289|consen 445 TYLGIAGSD------LQVYICKKKTKSWTEIKELAD-HSGLSTGVRFGEHAQYLASTSMDA---ILRLY 503 (506)
T ss_pred CeEEeecce------eEEEEEecccccceeeehhhh-cccccceeeecccceEEeeccchh---heEEe
Confidence 999988653 4455555321111110 1111 234677899999999999999998 66654
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7.8e-14 Score=150.06 Aligned_cols=259 Identities=13% Similarity=0.136 Sum_probs=182.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+.+.+||.-|+.+.+||.|..+..||. ....+.|.+. +.-+.| .+.|..|.|.+ =|+.+|+++.|+++
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~--~~~s~~W~~T---s~Wrah----~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDS--TSDSGTWSCT---SSWRAH----DGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEec--cCCCCceEEe---eeEEec----CCcEEEEEecCccccceEEEEecCCce
Confidence 7899999999999999999999999997 4444445543 123333 47899999955 38999999999999
Q ss_pred EEEECCC-------CeE---EEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEe-------ccCceeeeeecccccC
Q 000992 100 LLHSVDG-------NAT---EVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMT-------HDWDLLYENPLEELAE 160 (1196)
Q Consensus 100 ~lw~~~~-------~~~---e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~-------~~~d~~~~~~l~~~~~ 160 (1196)
.||..+. .+. .++-.-.+.|+.+.|+|- |=.||+++.||+|+++. +.|....|+..-..+-
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9998732 111 122222567999999997 66899999999999863 3466666555333221
Q ss_pred ccccccCccccCCCCeEEEEEccC---CceEEEeeccccccCCCCEEEEEECCC-C-cEEE--EeccCCCceeEEEEcCC
Q 000992 161 GFDVHEPELSSSFSFKSPISWRGD---GKYFATLSEFCNSSKLHKRLKVWERDS-G-TLQA--SSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 161 ~~~Vs~tqf~~~~~~v~~isWspD---G~~lAsvss~d~~~~~d~~irVWd~~~-G-~l~~--~~e~~~~~v~slawsPd 233 (1196)
+ .+.....+++|+|- -++|| +++.+ .+..-+.++||...+ | +.+. ++..|..+|.+|+|.|+
T Consensus 166 ~---------~~~~~~~CvsWn~sr~~~p~iA-vgs~e-~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 166 G---------KNKQPCFCVSWNPSRMHEPLIA-VGSDE-DAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred c---------cccCcceEEeeccccccCceEE-EEccc-CCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 1 11234579999963 34899 88743 123446789998753 3 3333 45578899999999997
Q ss_pred -C---CeEEEEecCCCCCCCCeEEEEeCCCee-------------EEEEEec-----cCCCCcEEEEEEccCCCeeEEEE
Q 000992 234 -G---ANIAAVYDRKSENKCPSIVFYERNGLE-------------RSSFDIN-----EQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 234 -G---~~IAs~s~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~-----~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
| .+||+++.|+ |++|...+.+ .+.+.+. ..|.+.|+.+.||--|.+|++.+
T Consensus 235 ~Gr~y~~lAvA~kDg-------v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-------VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG 307 (361)
T ss_pred cCCceeeEEEeecCc-------EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC
Confidence 3 4799998752 8888754322 1111111 23456899999999999999999
Q ss_pred ccCCcceEEEEEec-CCEEE
Q 000992 292 RFEEYDSVKICFFS-NNHWY 310 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~-n~~wy 310 (1196)
.|| .|+||..+ |..|-
T Consensus 308 dDG---~VRLWkany~n~~k 324 (361)
T KOG2445|consen 308 DDG---CVRLWKANYNNLWK 324 (361)
T ss_pred CCc---eeeehhhhhhhhhe
Confidence 999 99999876 44453
No 130
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.1e-14 Score=168.93 Aligned_cols=273 Identities=14% Similarity=0.101 Sum_probs=184.9
Q ss_pred cCCCEEEEEECCCcEEEEECCC--Ce-----EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc
Q 000992 85 MEKEALIVGTSSGLLLLHSVDG--NA-----TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 85 pd~~~La~as~dG~I~lw~~~~--~~-----~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
|.+++|.+|+.||.|++|+... ++ +....+|.++|+.++.--+|+.|+++|.|-||++|+..-+. ..+...
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--TFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--chhHhh
Confidence 4567799999999999999854 22 22456789999999999999999999999999998743221 123222
Q ss_pred ccCccccccCccccCCCCeEEEEE-ccCCceEEEeeccccccCCCCEEEEEECCCC--cEEEEec---------cCCCce
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSE---------LKAFMG 225 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isW-spDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e---------~~~~~v 225 (1196)
.. .|++.|.+++. -++...+| +++. |+.|.|||.++| ++..+++ ++...+
T Consensus 113 ir-----------~H~DYVkcla~~ak~~~lva-SgGL------D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 113 IR-----------THKDYVKCLAYIAKNNELVA-SGGL------DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred hh-----------cccchheeeeecccCceeEE-ecCC------CccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 22 57788999999 88888888 6764 699999999877 3333322 344567
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.++|-+|.|..|++|+-. ..++||+. .+.+. ..|++ |+..|..|--++||+.+.++++|+ +|+||++
T Consensus 175 YSLA~N~t~t~ivsGgte------k~lr~wDprt~~ki--mkLrG-HTdNVr~ll~~dDGt~~ls~sSDg---tIrlWdL 242 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTE------KDLRLWDPRTCKKI--MKLRG-HTDNVRVLLVNDDGTRLLSASSDG---TIRLWDL 242 (735)
T ss_pred eeeecCCcceEEEecCcc------cceEEeccccccce--eeeec-cccceEEEEEcCCCCeEeecCCCc---eEEeeec
Confidence 999999999999998874 57999994 33332 34554 467899999999999999999999 9999999
Q ss_pred cCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
+..+. .+++..|.++.+.+.=+|.= ..++.+..+| .|..|+++.- --+
T Consensus 243 gqQrC--l~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~-------------------------~i~~Tdl~n~----~~~ 290 (735)
T KOG0308|consen 243 GQQRC--LATYIVHKEGVWALQSSPSF-THVYSGGRDG-------------------------NIYRTDLRNP----AKS 290 (735)
T ss_pred cccce--eeeEEeccCceEEEeeCCCc-ceEEecCCCC-------------------------cEEecccCCc----hhh
Confidence 98764 23455544332222222211 1122222222 3344454421 111
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 385 ~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
..-.+-+.+|..+..+-+. +.+-+++.|+.|+-|...
T Consensus 291 tlick~daPv~~l~~~~~~--~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 291 TLICKEDAPVLKLHLHEHD--NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEeecCCCchhhhhhcccc--CCceeeeccccceecCCc
Confidence 1112334566666655443 445677788889888765
No 131
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.61 E-value=1.1e-14 Score=152.37 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=202.6
Q ss_pred EeeeecCcEEEEEEC---CCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 111 VVGRVEGGVRFISPS---PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 111 ~vg~~~~~I~~~awS---PDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
+-| |..+|..++|| |||=.|.+++.|+.=.+ |.++. +.+| ..|.+|.+.|++.+-.-+...
T Consensus 10 c~g-htrpvvdl~~s~itp~g~flisa~kd~~pml--r~g~t-----------gdwi--gtfeghkgavw~~~l~~na~~ 73 (334)
T KOG0278|consen 10 CHG-HTRPVVDLAFSPITPDGYFLISASKDGKPML--RNGDT-----------GDWI--GTFEGHKGAVWSATLNKNATR 73 (334)
T ss_pred EcC-CCcceeEEeccCCCCCceEEEEeccCCCchh--ccCCC-----------CCcE--EeeeccCcceeeeecCchhhh
Confidence 455 58899999998 59999999999986533 43331 1222 245578888888888877765
Q ss_pred EEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1196)
-| +++ .|-+-+|||.-+|..+.+++ |...|.+++|+.|.+.|.+|+..+ -+++|+.|-..-.--.+
T Consensus 74 aa-saa------adftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ek------llrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 74 AA-SAA------ADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEK------LLRVFDLNRPKAPPKEI 139 (334)
T ss_pred hh-hhc------ccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHH------HhhhhhccCCCCCchhh
Confidence 55 454 46789999998999888887 778899999999999999998754 57888876432110011
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEE
Q 000992 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1196)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1196)
..+.+.|..+-|--.-+.+.+.+.|+ +|||||..+.. ..|.|.+.. .+.++--|++|..
T Consensus 140 -~ghtg~Ir~v~wc~eD~~iLSSadd~---tVRLWD~rTgt--~v~sL~~~s-~VtSlEvs~dG~i-------------- 198 (334)
T KOG0278|consen 140 -SGHTGGIRTVLWCHEDKCILSSADDK---TVRLWDHRTGT--EVQSLEFNS-PVTSLEVSQDGRI-------------- 198 (334)
T ss_pred -cCCCCcceeEEEeccCceEEeeccCC---ceEEEEeccCc--EEEEEecCC-CCcceeeccCCCE--------------
Confidence 12457899999987666666668888 99999998764 356666632 1244444555432
Q ss_pred EEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 348 NFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 348 ~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
+...+|..|+.|+-..-. + .++...|.+|.+.+.+|+. ..+++++.|..++-||..+...
T Consensus 199 -------------lTia~gssV~Fwdaksf~---~--lKs~k~P~nV~SASL~P~k--~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 199 -------------LTIAYGSSVKFWDAKSFG---L--LKSYKMPCNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred -------------EEEecCceeEEecccccc---c--eeeccCccccccccccCCC--ceEEecCcceEEEEEeccCCce
Confidence 222345555555432100 0 1344578899999999998 8999999999999999988655
Q ss_pred cccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.+.. .++|.+.|..+.|+|||.+.|+++.+ .++.+|..+
T Consensus 259 i~~~-----------nkgh~gpVhcVrFSPdGE~yAsGSED--GTirlWQt~ 297 (334)
T KOG0278|consen 259 IGSY-----------NKGHFGPVHCVRFSPDGELYASGSED--GTIRLWQTT 297 (334)
T ss_pred eeec-----------ccCCCCceEEEEECCCCceeeccCCC--ceEEEEEec
Confidence 5221 12456789999999999999998876 688999875
No 132
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=2.6e-11 Score=140.06 Aligned_cols=367 Identities=16% Similarity=0.165 Sum_probs=231.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-ccCCC-EEEEEEC-CCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-LMEKE-ALIVGTS-SGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-spd~~-~La~as~-dG~ 98 (1196)
.+....++..+..+.+.+.++.+..|+. ..... .+.. +.... ...+..+.+ ++++. .++..+. |+.
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~--~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDL--DNGEK--LIKS----LEGLH---DSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEc--CCCce--eEEE----EeccC---CCceeeEEEECCCcceEEeccCCCCcc
Confidence 6778889999999999998888999998 33321 1111 11110 125677777 88888 5555444 999
Q ss_pred EEEEECCC--CeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEeccC-ceeeeeecccccCccccccCccccCCC
Q 000992 99 LLLHSVDG--NATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 99 I~lw~~~~--~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+.+|+..+ ........|...|.+++|+|+++.+++++. |+++.+|+... ..+.. +.+|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 199 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----------------LAGHTD 199 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe----------------eccCCC
Confidence 99999986 444455557889999999999999999986 99999986432 11111 113556
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
.+..++|+|+|.+++ ++. ..+++|++||...|.... ...+|.... ...|+|+|.++++++.+ ..++
T Consensus 200 ~v~~~~~~~~~~~~~-~~~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d------~~~~ 266 (466)
T COG2319 200 PVSSLAFSPDGGLLI-ASG-----SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD------GTIR 266 (466)
T ss_pred ceEEEEEcCCcceEE-EEe-----cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC------CcEE
Confidence 789999999998444 231 146899999987788887 566666654 33899999888888775 4699
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
+|+..........+ ..+...|..+.|+|++..+++++.|+ .+++|+..+...........+......+.| +....
T Consensus 267 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 341 (466)
T COG2319 267 LWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDG---TVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGS 341 (466)
T ss_pred EeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCC---cEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCC
Confidence 99865433311222 22356899999999999999988886 799998776432111110111111244555 32212
Q ss_pred eEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000992 334 QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1196)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~ 413 (1196)
.+..... .| ..+.+|++.... ..........+..+.|++ . .........
T Consensus 342 ~~~~~~~-----------------------~d-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 390 (466)
T COG2319 342 LLVSGGS-----------------------DD-GTIRLWDLRTGK-----PLKTLEGHSNVLSVSFSP-D-GRVVSSGST 390 (466)
T ss_pred EEEEeec-----------------------CC-CcEEeeecCCCc-----eeEEecCCceEEEEEECC-C-CCEEEEecC
Confidence 1222210 11 223333332211 111122223378899999 6 355566889
Q ss_pred CCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 414 DGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 414 dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
++.+.+|+...........+ ....+....+++++..++.+..+ ..+.+|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 441 (466)
T COG2319 391 DGTVRLWDLSTGSLLRNLDG------------HTSRVTSLDFSPDGKSLASGSSD--NTIRLWDL 441 (466)
T ss_pred CCceEEEecccCeeeeeccC------------CCCcEEEEEECCCCcEEEEecCC--CcEEEEec
Confidence 99999999976433211111 00467888889999887764332 45555554
No 133
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.1e-12 Score=135.33 Aligned_cols=270 Identities=16% Similarity=0.200 Sum_probs=171.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc-ceeeccc-cccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA-SIKTAIS-AEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~-~~~~~~~-~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
.+-+.+|-|.+....++|.++.+.........+... -+....| +-+..-.--..+.|.+.+|||+|+.||+|+.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 566778888888666666665433322210000000 0000011 00100000004789999999999999999999999
Q ss_pred EEE--ECCCC-----eEEEeeeecCcEEEEEEC----CCCCEEEEEe-CCceEEEEeccCceeeeeecccccCccccccC
Q 000992 100 LLH--SVDGN-----ATEVVGRVEGGVRFISPS----PDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 100 ~lw--~~~~~-----~~e~vg~~~~~I~~~awS----PDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
++. |.+|. .+| +.-|++.|..++|= .-|.+||+++ +|-+|.+- |.-.+..++...
T Consensus 114 k~l~fn~dt~~~~g~dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t----dc~~g~~~~a~s-------- 180 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT----DCGRGQGFHALS-------- 180 (350)
T ss_pred EEEecccccccccCccee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe----ecCCCCcceeec--------
Confidence 984 44442 233 34479999999993 3466788876 34444332 222334444333
Q ss_pred ccccCCCCeEE-EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--CC-----CceeEEEEcCCCCeEEE
Q 000992 168 ELSSSFSFKSP-ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KA-----FMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 168 qf~~~~~~v~~-isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~-----~~v~slawsPdG~~IAs 239 (1196)
+|.+.+.. .+| +|.+|| +++ .|.+||.||..-..+..+... |+ ..|.+++--|.|+++|+
T Consensus 181 ---ghtghilalysw--n~~m~~-sgs------qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 181 ---GHTGHILALYSW--NGAMFA-SGS------QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred ---CCcccEEEEEEe--cCcEEE-ccC------CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence 45555554 366 478899 676 579999999866666666532 22 34689999999999999
Q ss_pred EecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE--
Q 000992 240 VYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR-- 316 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~-- 316 (1196)
|..|. .-.+|+..|.+ .+.| -|+...|.++.|||..-+|.+++.|. .|++=|+... |.+++.
T Consensus 249 g~~ds------sc~lydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~---~ikltdlqgd---la~el~~~ 313 (350)
T KOG0641|consen 249 GHADS------SCMLYDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDM---KIKLTDLQGD---LAHELPIM 313 (350)
T ss_pred ccCCC------ceEEEEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccc---eEEEeecccc---hhhcCceE
Confidence 99874 46788865544 3333 25677899999999999999999999 8999998752 233332
Q ss_pred --EecCCc-EEEEEccCC
Q 000992 317 --YLRRDG-IRFMWHPTK 331 (1196)
Q Consensus 317 --~~~~~~-~~v~Wsp~~ 331 (1196)
....+. ..+.|||+.
T Consensus 314 vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred EEEeccCceEEEEecCcc
Confidence 222333 677898875
No 134
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.8e-13 Score=164.61 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=143.2
Q ss_pred CCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCc--eEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFG--QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~---dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~--tV~l~~~~~d~ 149 (1196)
..+.+..|||||+.|+..+. +..|.+|+..+++.+.+....+.+.+.+|||||+.||.+. .++ .|.+|+.....
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 46889999999999997653 3468999999887765555556677899999999999873 344 46555432111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.. .+. .+...+...+|+|||+.|++ ++.. .+...|.++|..+|+...... ..+.....+
T Consensus 279 ~~--~lt--------------~~~~~~~~~~wSPDG~~I~f-~s~~---~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~ 337 (429)
T PRK03629 279 IR--QVT--------------DGRSNNTEPTWFPDSQNLAY-TSDQ---AGRPQVYKVNINGGAPQRITW-EGSQNQDAD 337 (429)
T ss_pred EE--Ecc--------------CCCCCcCceEECCCCCEEEE-EeCC---CCCceEEEEECCCCCeEEeec-CCCCccCEE
Confidence 11 111 11124568999999999984 4421 112355556775665544322 233446789
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|||||+.||.++.+.+ ...|.+|+..+..... +... ....+.+|||||+.|+..+.++....+.+|++....
T Consensus 338 ~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~--Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~- 409 (429)
T PRK03629 338 VSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQV--LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF- 409 (429)
T ss_pred ECCCCCEEEEEEccCC---CceEEEEECCCCCeEE--eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-
Confidence 9999999998876432 4568888865433322 2211 224578999999999999988754567778775432
Q ss_pred EEEEEEEEecCCcEEEEEcc
Q 000992 310 YLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1196)
.+.+..+........|+|
T Consensus 410 --~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 --KARLPATDGQVKFPAWSP 427 (429)
T ss_pred --eEECccCCCCcCCcccCC
Confidence 233433222335677887
No 135
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2e-13 Score=164.64 Aligned_cols=203 Identities=16% Similarity=0.101 Sum_probs=136.6
Q ss_pred CCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCce--EEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~---dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~t--V~l~~~~~d~ 149 (1196)
..+.+..|||||+.|+.++. +++|.+||+.+++...+..+.+.+.+.+|||||+.||.. +.++. |.+|+.....
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 47899999999999998864 468999999998777666667778899999999998765 44555 4444422111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
. ..+. .+.......+|+|||+++++ .+.. .+...|.+||..+|+...... ..+.....+
T Consensus 282 ~--~~Lt--------------~~~~~~~~~~~spDG~~i~f-~s~~---~g~~~Iy~~d~~g~~~~~lt~-~~~~~~~~~ 340 (435)
T PRK05137 282 T--TRLT--------------DSPAIDTSPSYSPDGSQIVF-ESDR---SGSPQLYVMNADGSNPRRISF-GGGRYSTPV 340 (435)
T ss_pred e--EEcc--------------CCCCccCceeEcCCCCEEEE-EECC---CCCCeEEEEECCCCCeEEeec-CCCcccCeE
Confidence 1 1111 11123357899999999994 4321 134578999986666655443 244556789
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCc---ceEEEEEecC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY---DSVKICFFSN 306 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~---~~V~lW~~~n 306 (1196)
|||||+.||..+.+.+ ...|.+|+.+|..... +.. ...+.+++|||||+.|+..+.+... ..+.+.++.+
T Consensus 341 ~SpdG~~ia~~~~~~~---~~~i~~~d~~~~~~~~--lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 341 WSPRGDLIAFTKQGGG---QFSIGVMKPDGSGERI--LTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ECCCCCEEEEEEcCCC---ceEEEEEECCCCceEe--ccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 9999999998876432 4578888876543322 221 2246789999999999987765422 2355555544
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.59 E-value=1.1e-12 Score=152.88 Aligned_cols=388 Identities=12% Similarity=0.091 Sum_probs=239.6
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccc------ccccc-----c---cCCC--CCCEEEEEEccCCCE
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAIS------AEIEH-----I---DLEP--GDSITAFDYLMEKEA 89 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~------~~l~~-----~---~~~~--~~~v~~v~~spd~~~ 89 (1196)
-++-+-++.|++++.++.|..++.. +-+ -+.||| ++.+. + ...| ...-+++.|.|..+.
T Consensus 264 nCIcVs~r~I~cgCa~g~vrlFnp~--tL~---y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~k 338 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKGMVRLFNPE--TLD---YAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDK 338 (1080)
T ss_pred ceeeeecceEEEeeccceeeecCcc--hhh---hccccccccccccchhhcccccccccccCcccCCceeEEEecCCCce
Confidence 3455567889999999977777662 211 122333 11100 0 0001 123578899999999
Q ss_pred EEEEECCCcEEEEECCC----CeEEEeeeecCcEEEEEECC------CC-----CEEEEEeCCceEEEEeccC----cee
Q 000992 90 LIVGTSSGLLLLHSVDG----NATEVVGRVEGGVRFISPSP------DG-----DLLGVTTGFGQILVMTHDW----DLL 150 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~----~~~e~vg~~~~~I~~~awSP------Dg-----~~LA~~s~d~tV~l~~~~~----d~~ 150 (1196)
|.....|..+.+||++. +++...=.|...||.+.-=| .. .-..+++.|+||++|+..+ +..
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vy 418 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVY 418 (1080)
T ss_pred EEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccccee
Confidence 99999999999999975 44443344677787766544 11 2367889999999998776 221
Q ss_pred eeeecccccCccccc---cCccc----------------cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC
Q 000992 151 YENPLEELAEGFDVH---EPELS----------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs---~tqf~----------------~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
..-.+..+ -.+.+. ++||. ....++.+|+-||||++|| ++. .-+++|||+..+
T Consensus 419 rRNils~~-l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA-sGD------r~GnlrVy~Lq~ 490 (1080)
T KOG1408|consen 419 RRNILSAN-LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA-SGD------RGGNLRVYDLQE 490 (1080)
T ss_pred ecccchhh-hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec-ccC------ccCceEEEEehh
Confidence 11111111 011111 23332 2335789999999999999 453 347999999988
Q ss_pred CcEEEEeccCCCceeEEEEcCC---CCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEeccCCCCcEEEEEEccCC--
Q 000992 212 GTLQASSELKAFMGAVLEWMPS---GANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQIDSTVELLKWNCMS-- 284 (1196)
Q Consensus 212 G~l~~~~e~~~~~v~slawsPd---G~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l~~~~~~~V~~laWSpDg-- 284 (1196)
-+.....|.|+..|-++.||-- .++|||+++|. -|.+|+. |=...+ +|.+ |...|.+|.|-..|
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR------lIHV~Dv~rny~l~q--tld~-HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR------LIHVYDVKRNYDLVQ--TLDG-HSSSITSVKFACNGLN 561 (1080)
T ss_pred hhhhhheecccceeEEEeecCchhhhHhhhhccCCc------eEEEEecccccchhh--hhcc-cccceeEEEEeecCCc
Confidence 7777788999999999999852 46899999974 5888884 322111 2222 35689999999988
Q ss_pred CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEE
Q 000992 285 DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVI 364 (1196)
Q Consensus 285 ~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~vi 364 (1196)
..+.+++.|+ .| .+++.. |. .++.. .|.+..++ +.-..|+. .++|...-++.+.
T Consensus 562 ~~MiscGADk---si-mFr~~q-----k~------~~g~~---f~r~t~t~------~ktTlYDm--~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 562 RKMISCGADK---SI-MFRVNQ-----KA------SSGRL---FPRHTQTL------SKTTLYDM--AVDPTSKLVVTVC 615 (1080)
T ss_pred eEEEeccCch---hh-heehhc-----cc------cCcee---cccccccc------ccceEEEe--eeCCCcceEEEEe
Confidence 6777777887 33 333221 00 00000 01111100 01111111 1223333444555
Q ss_pred cCCEEEEeeccccCCCCCceee-eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecc
Q 000992 365 DGSKILVTPLSLSLMPPPMYLF-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS 443 (1196)
Q Consensus 365 Dg~~l~lt~l~~~~vpppm~~~-~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~ 443 (1196)
.+.+|++..+.-+-.- -.++ .-.+.+....|..-|.| .+||+..+|.++.++|+.+.+|+....||
T Consensus 616 QDrnirif~i~sgKq~--k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl~~~Df~sgEcvA~m~GH--------- 682 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQV--KSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTLCFVDFVSGECVAQMTGH--------- 682 (1080)
T ss_pred cccceEEEecccccee--eeecccccCCCceEEEEECCCc--cEEEEeecCCceEEEEeccchhhhhhcCc---------
Confidence 5555555544321100 0000 11356677889999999 89999999999999999988888666665
Q ss_pred cccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 444 ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 444 ~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
...|..+-|+||-+.|.+.+.+ .=+.+|.+.
T Consensus 683 ---sE~VTG~kF~nDCkHlISvsgD--gCIFvW~lp 713 (1080)
T KOG1408|consen 683 ---SEAVTGVKFLNDCKHLISVSGD--GCIFVWKLP 713 (1080)
T ss_pred ---chheeeeeecccchhheeecCC--ceEEEEECc
Confidence 4578999999999888777654 456667664
No 137
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=2.8e-13 Score=152.58 Aligned_cols=278 Identities=13% Similarity=0.069 Sum_probs=201.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccc--cc--cccCC-----CCCCEEEEEEccCCCEEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE--IE--HIDLE-----PGDSITAFDYLMEKEALIV 92 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~--l~--~~~~~-----~~~~v~~v~~spd~~~La~ 92 (1196)
.+++++..++...+|+++.++.|.+|++ .++...-.+ ++.+ ++ ..++. +...+.+++.||||++||+
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v--~tgk~~~~i--~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDV--LTGKKDRYI--IERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeeh--hcCcccccc--cccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 6889999999999999999999999999 555432111 1111 11 11111 1367999999999999999
Q ss_pred EECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcccc
Q 000992 93 GTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 93 as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
|..|..|.||+.++.+. .....|.+.|.+++|=-.-..|-+++.|.+|++|+.+-.... ..+.+
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v---------------etlyG 284 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV---------------ETLYG 284 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH---------------HHHhC
Confidence 99999999999998653 455667999999999888888999999999999975311111 12337
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
|.+.|..|.=..-++.+- |++ .||++|+|.. .-+.+-++.++.+.+.+++|=-+- .+++||++ ..
T Consensus 285 Hqd~v~~IdaL~reR~vt-VGg------rDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSdn------G~ 349 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERCVT-VGG------RDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSDN------GS 349 (479)
T ss_pred CccceeeechhcccceEE-ecc------ccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccCC------ce
Confidence 778899998877776544 765 5799999999 777777788888889999997664 56778875 46
Q ss_pred EEEEeCCCeeEEEEEeccC---------C--CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE--EEEEEEEEEe
Q 000992 252 IVFYERNGLERSSFDINEQ---------I--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH--WYLKYEIRYL 318 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~---------~--~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~--wylkq~l~~~ 318 (1196)
|.+|..--.+ --|+.+.. . ..+|.+|+-.|.+.++|+++.++ .|+||-++..- -.+..++.+.
T Consensus 350 IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G---~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 350 IALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG---CVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC---ceEEEEecCCccccceeeecccc
Confidence 9999843211 12322211 1 12899999999999999999999 99999998542 1233344331
Q ss_pred cCCcEEEEEccCCCceEEEEe
Q 000992 319 RRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
.-+..+.|++++.. +.++.
T Consensus 426 -GfVNsl~f~~sgk~-ivagi 444 (479)
T KOG0299|consen 426 -GFVNSLAFSNSGKR-IVAGI 444 (479)
T ss_pred -cEEEEEEEccCCCE-EEEec
Confidence 12377889998874 44443
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.58 E-value=5.7e-14 Score=158.32 Aligned_cols=241 Identities=13% Similarity=0.139 Sum_probs=181.8
Q ss_pred ccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEEEEEccCCCEEEEEECCCc
Q 000992 20 DEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 20 ~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
|+.+++.++...+..||.+..-. |..||++ ......-++.|| .+ +...|.+...+|||+.|.+|++-.+
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgc-VKVWdis--~pg~k~PvsqLd-------cl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGC-VKVWDIS--QPGNKSPVSQLD-------CLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCe-EEEeecc--CCCCCCcccccc-------ccCcccceeeeEecCCCceEEeccccce
Confidence 44678888999999999988776 9999994 332222233322 22 3578999999999999999999999
Q ss_pred EEEEECCCC--eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 99 LLLHSVDGN--ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~lw~~~~~--~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
+.|||+..- .+. .+..-.-.-.+++.|||.+++.++-.||+|.+|+.. .+... .||++|.++
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh----nq~~V-----------rqfqGhtDG 553 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH----NQTLV-----------RQFQGHTDG 553 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc----cceee-----------ecccCCCCC
Confidence 999999753 232 222212346789999999999999999999887532 22222 378899999
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+.+|..|+||.-|= .++. |.+||-||..+|..+.... ....|.++..+|.|.++|.|-.. ..|.+.
T Consensus 554 ascIdis~dGtklW-TGGl------DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen------s~vevl 619 (705)
T KOG0639|consen 554 ASCIDISKDGTKLW-TGGL------DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN------SNVEVL 619 (705)
T ss_pred ceeEEecCCCceee-cCCC------ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc------CcEEEE
Confidence 99999999999998 5764 6899999998886554322 23457999999999999999764 346666
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..+|....+ |.. ++.-|.+|.|++-|+..++.+.|. -+-.|.+.
T Consensus 620 h~skp~kyq--lhl-heScVLSlKFa~cGkwfvStGkDn---lLnawrtP 663 (705)
T KOG0639|consen 620 HTSKPEKYQ--LHL-HESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTP 663 (705)
T ss_pred ecCCcccee--ecc-cccEEEEEEecccCceeeecCchh---hhhhccCc
Confidence 666654443 332 356799999999999999999998 77778765
No 139
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=1.5e-13 Score=148.54 Aligned_cols=309 Identities=14% Similarity=0.229 Sum_probs=191.1
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE-EEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La-~as~dG~I 99 (1196)
.++.+-|-.|+.-+.|+ ..+..+..|++ .+.+=..+| ++| .+.+.++.|||||+.|. ...-+-.|
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl--~Qpew~ckI---deg--------~agls~~~WSPdgrhiL~tseF~lri 116 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSL--VQPEWYCKI---DEG--------QAGLSSISWSPDGRHILLTSEFDLRI 116 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEe--ecceeEEEe---ccC--------CCcceeeeECCCcceEeeeecceeEE
Confidence 56667788888777776 56878999999 666643333 222 36799999999996555 44557778
Q ss_pred EEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCce---EEEE-eccCceeeeeecccccCccccccCccccCCCC
Q 000992 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ---ILVM-THDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t---V~l~-~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.+|++.+.....+.+...++..++|.|||+..|+++.-.. |.+. -+.|..+.+..+.+.+
T Consensus 117 TVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D---------------- 180 (447)
T KOG4497|consen 117 TVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID---------------- 180 (447)
T ss_pred EEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc----------------
Confidence 8899999888878877888999999999999999986422 2233 2557776666655443
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC----------
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---------- 245 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~---------- 245 (1196)
...|.|||||..+| |= |.. -+-+|..|.+..| +-.++|||.|++||.|+.|+-
T Consensus 181 ltgieWsPdg~~la-Vw--d~~--Leykv~aYe~~lG------------~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLA-VW--DNV--LEYKVYAYERGLG------------LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred ccCceECCCCcEEE-Ee--cch--hhheeeeeeeccc------------eeEEEeccccceEEeeccchhhhhhceeeee
Confidence 36788999999988 52 211 2334555555222 367889999999999887621
Q ss_pred ---------CCCCCe---------------------------EEEEeCCCeeEEE------E-Eec------cCCCCcEE
Q 000992 246 ---------ENKCPS---------------------------IVFYERNGLERSS------F-DIN------EQIDSTVE 276 (1196)
Q Consensus 246 ---------~~~~~~---------------------------V~~~e~nGl~~~~------f-~l~------~~~~~~V~ 276 (1196)
.-.+.+ ...|+....+..+ + .++ .| --.+.
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP-k~g~g 322 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP-KCGAG 322 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc-ccccc
Confidence 000000 0001100000000 0 011 01 12477
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeec
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV 355 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~ 355 (1196)
-|+||+|++++|+-.+.- -+.+.|||+.|.+- ... ..+..+ ..+.|||..+. |.+.++. ...| .|..+
T Consensus 323 ~lafs~Ds~y~aTrnd~~-PnalW~Wdlq~l~l--~av--LiQk~piraf~WdP~~pr-L~vctg~--srLY--~W~ps- 391 (447)
T KOG4497|consen 323 KLAFSCDSTYAATRNDKY-PNALWLWDLQNLKL--HAV--LIQKHPIRAFEWDPGRPR-LVVCTGK--SRLY--FWAPS- 391 (447)
T ss_pred eeeecCCceEEeeecCCC-CceEEEEechhhhh--hhh--hhhccceeEEEeCCCCce-EEEEcCC--ceEE--EEcCC-
Confidence 899999999999976543 23799999998431 001 112233 67899998886 6666632 2222 33321
Q ss_pred CCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 356 ~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
+-..| .+|.|- -+|.++-|..+| ..++..+.|.
T Consensus 392 -g~~~V----------------~vP~~G--------F~i~~l~W~~~g--~~i~l~~kDa 424 (447)
T KOG4497|consen 392 -GPRVV----------------GVPKKG--------FNIQKLQWLQPG--EFIVLCGKDA 424 (447)
T ss_pred -CceEE----------------ecCCCC--------ceeeeEEecCCC--cEEEEEcCCc
Confidence 11111 112221 257889999999 7777777764
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.7e-13 Score=144.16 Aligned_cols=266 Identities=15% Similarity=0.219 Sum_probs=174.9
Q ss_pred ecCcEEEEEECCCCCEEEEEeCCceEEEEec-c----CceeeeeecccccCccccccCccccCCCCeEEEEEcc--CCce
Q 000992 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTH-D----WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKY 187 (1196)
Q Consensus 115 ~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~----~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~ 187 (1196)
|++=|.++.|.+-|+.+|+++.|++|++|.. . |... ..++.|++.|+.|.|-+ =|+.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----------------s~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----------------SSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----------------eeEEecCCcEEEEEecCccccce
Confidence 4677999999999999999999999999862 1 2211 13457888999999965 5889
Q ss_pred EEEeeccccccCCCCEEEEEECCCC---------cEEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEe
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSG---------TLQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G---------~l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+|+ .+ .||+++||.-..- ....++....+.+.+|.|.|. |-.+|+++.|+ .+++||
T Consensus 76 vA~-cS------~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG------~lRIYE 142 (361)
T KOG2445|consen 76 VAT-CS------YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG------ILRIYE 142 (361)
T ss_pred EEE-Ee------cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc------EEEEEe
Confidence 994 54 3799999976211 122334445567899999996 77899999864 699998
Q ss_pred C-CCeeEEEEEec----------cCCCCcEEEEEEccC---CCeeEEEEccCC--cceEEEEEecC-C-EEEEEEEEEEe
Q 000992 257 R-NGLERSSFDIN----------EQIDSTVELLKWNCM---SDLLAAVVRFEE--YDSVKICFFSN-N-HWYLKYEIRYL 318 (1196)
Q Consensus 257 ~-nGl~~~~f~l~----------~~~~~~V~~laWSpD---g~~LAs~~~d~~--~~~V~lW~~~n-~-~wylkq~l~~~ 318 (1196)
. +-.-..+++|. +.......+|.|+|. .+.||+|+.+.. -+.++||..+. . +|....++..+
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 3 21111222221 112345779999974 468999998732 22599999763 3 56555667644
Q ss_pred cCCcEEEEEccCCCc---eEEEEecCCcEEEEEEEEeeec-CCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCC
Q 000992 319 RRDGIRFMWHPTKPL---QLICWTLDGQITTYNFIWTTAV-MENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTA 393 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~---~L~~~~~~g~~~~~~~~~~~~~-~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~ 393 (1196)
.+-...++|.|.-+. .|++++.+| +.++...-.-.+ ..... -++. .++.+.... ..++ .|.+.
T Consensus 223 ~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~---~~~~--~~~~l~v~~------vs~~~~H~~~ 290 (361)
T KOG2445|consen 223 TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV---LAPD--LMTDLPVEK------VSELDDHNGE 290 (361)
T ss_pred CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc---cCCC--CccccceEE------eeeccCCCCc
Confidence 333489999998763 577888887 654433210000 00000 0000 011111100 1123 38889
Q ss_pred EEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 394 VTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 394 V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
||.|.|.-.| .+|++.+.||+|++|+..
T Consensus 291 VWrv~wNmtG--tiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 291 VWRVRWNMTG--TILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEEEEeeee--eEEeecCCCceeeehhhh
Confidence 9999999999 899999999999999875
No 141
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=7.8e-11 Score=139.69 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=111.7
Q ss_pred ccHHHHhhCHHHHHHHHHHcCC--------------CcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcc
Q 000992 938 YTIDLRLQRFENALKHIVSMGD--------------SYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~--------------~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
-.|..|+|+-+||.+.-.+.|+ ..+.+|+.++.+. +-|.-|++|++.......++.. --+...
T Consensus 945 VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA-qafsnAIRlcKEnd~~d~L~nl--al~s~~ 1021 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA-QAFSNAIRLCKENDMKDRLANL--ALMSGG 1021 (1416)
T ss_pred eeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHH--HhhcCc
Confidence 3566667777777665444442 1256777777777 7888888887111111112211 123344
Q ss_pred cCHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChH---HHHHHHHHhcCC
Q 000992 1004 KCFEDAATTYFCCS-SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG---EAAKIALDYCGD 1079 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag-~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~---eAa~i~~~yl~d 1079 (1196)
.+.-.||.+|+.+| +..+|+..|.++|..-+|+.+|-+-.. -..+.-+|+.|....+.+ -++..|.. -..
T Consensus 1022 ~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQ-----f~aL~lIa~DLd~~sDp~ll~RcadFF~~-~~q 1095 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQ-----FSALDLIAKDLDAGSDPKLLRRCADFFEN-NQQ 1095 (1416)
T ss_pred hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcc-----cHHHHHHHHhcCCCCCHHHHHHHHHHHHh-HHH
Confidence 55667777777776 777777777777777777777754321 123444555554433333 34444444 567
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHhcCCc---hhHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 000992 1080 VTNGISLLIDARDWEEALRVAFMHRRE---DLITKVKHAS-----LECASSLIGEYKEGLEKVG 1135 (1196)
Q Consensus 1080 ~~~Ai~~y~~~~~w~eA~rla~~~~~~---dL~e~v~~~l-----~e~~~~~~e~l~~~~~~~~ 1135 (1196)
++.||.++|.+++|++|+.||...+.+ ++-|.+-|.- .+.-.+++++++|+-.|=.
T Consensus 1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG 1159 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQG 1159 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999876632 2222232222 2334556777777654433
No 142
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=3.6e-13 Score=145.50 Aligned_cols=241 Identities=17% Similarity=0.163 Sum_probs=168.6
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc--eEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK--YFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~--~lA 189 (1196)
..+|.+.|+|+|-| |.++|+||.|.+|.+++ ......+.... .|.+.++.+.|.|+-. .|.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYD----m~k~~qlg~ll-----------~HagsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYD----MRKRKQLGILL-----------SHAGSITALKFYPPLSKSHLL 101 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEe----ccchhhhccee-----------ccccceEEEEecCCcchhhee
Confidence 45688999999986 89999999999998754 33333332222 4567889999999985 565
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEec
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDIN 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~ 268 (1196)
+++ .|+.|-||+...-++..++.+|.+.|+.|+.+|+|++-.+.++| ..++.|+. +|. +-|.++
T Consensus 102 -S~s------dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D------~~lr~WNLV~Gr--~a~v~~ 166 (362)
T KOG0294|consen 102 -SGS------DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD------QVLRTWNLVRGR--VAFVLN 166 (362)
T ss_pred -eec------CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCC------ceeeeehhhcCc--cceeec
Confidence 354 47999999998889999999999999999999999998888886 46999994 442 346666
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
..+. -..|.|+|.|++.++.+.++ |-+|.+.+-+-+ .++..+ ....++.|...+ .|.++.
T Consensus 167 L~~~--at~v~w~~~Gd~F~v~~~~~----i~i~q~d~A~v~--~~i~~~-~r~l~~~~l~~~--~L~vG~--------- 226 (362)
T KOG0294|consen 167 LKNK--ATLVSWSPQGDHFVVSGRNK----IDIYQLDNASVF--REIENP-KRILCATFLDGS--ELLVGG--------- 226 (362)
T ss_pred cCCc--ceeeEEcCCCCEEEEEeccE----EEEEecccHhHh--hhhhcc-ccceeeeecCCc--eEEEec---------
Confidence 4332 33499999999999999997 999999875421 122221 112344444322 123332
Q ss_pred EEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 349 FIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 349 ~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
|...+++++-.. .. |.+ .-+.|+..|.++.+--+..+.+|+++++||.|++|+.+.
T Consensus 227 ----------------d~~~i~~~D~ds-~~--~~~-~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 227 ----------------DNEWISLKDTDS-DT--PLT-EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ----------------CCceEEEeccCC-Cc--cce-eeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 222333333221 11 112 234699999999876554347999999999999999974
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.56 E-value=3.7e-13 Score=145.54 Aligned_cols=285 Identities=17% Similarity=0.142 Sum_probs=178.9
Q ss_pred EEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccc-cCCCCeEEEEEc-------cCCceEEE
Q 000992 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWR-------GDGKYFAT 190 (1196)
Q Consensus 119 I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~-~~~~~v~~isWs-------pDG~~lAs 190 (1196)
.....|||||..|.+-+.|+.+.+|+.-++...+..-....-.++.+ .+ .....|...+|- |+..++|
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~---~r~~eg~tvydy~wYs~M~s~qP~t~l~a- 127 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLS---YRYQEGETVYDYCWYSRMKSDQPSTNLFA- 127 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCcccccccee---EEeccCCEEEEEEeeeccccCCCccceee-
Confidence 44567999999999999999999998665554433111110000000 00 112456888996 8889999
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEeccCCCc-----eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEE
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----GAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NGLERS 263 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~-----v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~ 263 (1196)
+++ .+.-|++||..+|++.......+.. -.+|+|||||..|-+|- +..|++|+. -|..-.
T Consensus 128 ~ss------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-------krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 128 VSS------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-------KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ecc------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-------cceEEEeeccCCCCCCc
Confidence 676 4578999999999998877654332 37999999999998764 357999984 332211
Q ss_pred EEEeccC----CCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 264 SFDINEQ----IDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 264 ~f~l~~~----~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
.+....+ ..+-+..++||| |++.||+++..+ ++-|+...+..- -+.+..+..+++.+.|+++|.. |..+
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~-lfsG 268 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---RVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNK-LFSG 268 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccc---eeeeEecCCCCc--eeeecccCCCeeeEEeccCcCe-eccc
Confidence 1111111 123477899999 567999999887 777777665432 2334444444589999999974 4443
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCC-CEEEEEE--ecCCCCCEEEEEECC
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT-AVTEMAF--YSKSSKNCLAAILSD 414 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~-~V~~Vaf--spdg~~~~lAs~~~d 414 (1196)
.. -...|+.|++|...- |. +.|+ |.+ .-.-|-| .|+| +.||+++.|
T Consensus 269 aR------------------------k~dkIl~WDiR~~~~--pv--~~L~rhv~~TNQRI~FDld~~~--~~LasG~td 318 (406)
T KOG2919|consen 269 AR------------------------KDDKILCWDIRYSRD--PV--YALERHVGDTNQRILFDLDPKG--EILASGDTD 318 (406)
T ss_pred cc------------------------CCCeEEEEeehhccc--hh--hhhhhhccCccceEEEecCCCC--ceeeccCCC
Confidence 32 112455555553221 21 2222 222 1122333 3667 899999999
Q ss_pred CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 415 g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
|.|++|++.+.-.+ .. ....+.+.+..+++.|-=.++|+++.
T Consensus 319 G~V~vwdlk~~gn~-------~s----v~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNE-------VS----VTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccEEEEecCCCCCc-------cc----ccccccccccceecCcccceeeeccC
Confidence 99999999863221 11 01134567888888888777887765
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.55 E-value=8e-13 Score=141.19 Aligned_cols=310 Identities=12% Similarity=0.091 Sum_probs=192.7
Q ss_pred ceeEEeee-cCCCEEEEEeCCCcEEEEeccccc-ccccceee-ccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCC
Q 000992 22 ILQFSALD-IEQNRLFFASSANNIYSAQLSSFQ-NERASIKT-AISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d-~~~~~l~~~s~~~~i~~~~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG 97 (1196)
.++.+.+| +++..+.++..|+.|..||+...+ ++..--|. ++-.--+.|+-...-.|.++.|.| |.-++.++|-|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 78888998 567888888889999999983111 11100010 000000112111123689999999 566888899999
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCC---EEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGD---LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~---~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
++++||.+|-+.-..=..++.|.+-+|||=.. ++|.|+.+-+|++ -|..++..-|... +|.+
T Consensus 125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrL----CDi~SGs~sH~Ls-----------GHr~ 189 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL----CDIASGSFSHTLS-----------GHRD 189 (397)
T ss_pred eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEE----EeccCCcceeeec-----------cccC
Confidence 99999999865543334578899999999654 7888888888866 3444444444433 8889
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
+|..+.|+|-.+|+...++ .|+.||+||.... -+..++..|.
T Consensus 190 ~vlaV~Wsp~~e~vLatgs------aDg~irlWDiRrasgcf~~lD~hn------------------------------- 232 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGS------ADGAIRLWDIRRASGCFRVLDQHN------------------------------- 232 (397)
T ss_pred ceEEEEeccCceeEEEecC------CCceEEEEEeecccceeEEeeccc-------------------------------
Confidence 9999999999998764555 4799999998321 1222222221
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
|.+......+..+.+.|+.+||++||.+|++.+.|. .+++|+..++.=.++.--....+....+.++
T Consensus 233 -----~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~---r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~----- 299 (397)
T KOG4283|consen 233 -----TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD---RIRVWNMESGRNTLREFGPIIHNQTTSFAVH----- 299 (397)
T ss_pred -----CccCccccccccccceeeeeeecccchhhhhccCcc---ceEEeecccCcccccccccccccccccceEE-----
Confidence 111110011112356799999999999999998887 8999999876533332111111111222222
Q ss_pred eEEEEecCCcEEEEEEEEeeecCCCee--EEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEE
Q 000992 334 QLICWTLDGQITTYNFIWTTAVMENST--ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI 411 (1196)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~--v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~ 411 (1196)
+-+.+-.+ |+. -|.+.++ ..+-.|..|.++.. |-.+|.+-+|.|+- +..-++
T Consensus 300 ---~~~~~s~v----fv~--~p~~~~lall~~~sgs~ir~l~~---------------h~k~i~c~~~~~~f--q~~~tg 353 (397)
T KOG4283|consen 300 ---IQSMDSDV----FVL--FPNDGSLALLNLLEGSFVRRLST---------------HLKRINCAAYRPDF--EQCFTG 353 (397)
T ss_pred ---Eeecccce----EEE--EecCCeEEEEEccCceEEEeeec---------------ccceeeEEeecCch--hhhhcc
Confidence 11111111 111 1333222 33446666655543 34568899999998 788999
Q ss_pred ECCCcEEEEeC
Q 000992 412 LSDGCLCVVDL 422 (1196)
Q Consensus 412 ~~dg~v~lw~~ 422 (1196)
.-|+.|.-|..
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999987
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.9e-13 Score=145.77 Aligned_cols=240 Identities=14% Similarity=0.092 Sum_probs=165.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENP 154 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~ 154 (1196)
.-.++.|++-|..||+|-.||.|.|||..|..+ .++++|-.+|.+++|||||+.|.++|.|..|++|+ ..++++.++.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 378899999999999999999999999999665 47888899999999999999999999999999987 4455555544
Q ss_pred ccc---------ccCcccc-c-------cCccc-------cC-CC-----CeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 155 LEE---------LAEGFDV-H-------EPELS-------SS-FS-----FKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 155 l~~---------~~~~~~V-s-------~tqf~-------~~-~~-----~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
+.. ....+.| + -.+|. +. ++ .-.+..|.+-|+|+. +|. +.+.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGt------sKGkl 177 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII-TGT------SKGKL 177 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE-Eec------CcceE
Confidence 321 1111111 0 00111 00 00 011234778899998 564 46899
Q ss_pred EEEECCCCcEEEEeccCC-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE----EEEEeccCCC-----Cc
Q 000992 205 KVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER----SSFDINEQID-----ST 274 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~----~~f~l~~~~~-----~~ 274 (1196)
-|++.++-++...+.-.. ..+.+|-++-.|+.++.-+.| ..|+.++.....+ ++....-.-. ..
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD------RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD------RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC------ceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999998888888776444 567899999999999987775 4688888532211 1211100001 12
Q ss_pred EEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 275 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 275 V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
-..++||.||.++..++.. +|.+.||..+.+. |.+.+.+....- ..+.|||-.+.
T Consensus 252 Wk~ccfs~dgeYv~a~s~~--aHaLYIWE~~~Gs--LVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSAR--AHALYIWEKSIGS--LVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred hhheeecCCccEEEecccc--ceeEEEEecCCcc--eeeeecCCchhheeecccccceee
Confidence 3467889999999988843 5789999987653 455555533233 67889998775
No 146
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.54 E-value=8.6e-13 Score=160.32 Aligned_cols=233 Identities=11% Similarity=0.031 Sum_probs=175.5
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.+.-|. .+.+..++.++.|..|+. .++.. +...+.+| .+.|.+++|..-+..|++|+.|.++++|
T Consensus 211 ~~~~q~~--~~~~~~~s~~~tl~~~~~--~~~~~------i~~~l~GH----~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGSDDSTLHLWDL--NNGYL------ILTRLVGH----FGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred hhhheee--cCeEEecCCCceeEEeec--ccceE------EEeeccCC----CCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 3444444 566778888888889998 55443 22225556 4789999999888999999999999999
Q ss_pred ECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 103 SVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 103 ~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
|..++.+. +...|.+.|.++..-| -.+++||.|.+|++|+-. +...++... +|.+.|.++..
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~----n~~~l~l~~-----------~h~~~V~~v~~ 339 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVT----NGACLNLLR-----------GHTGPVNCVQL 339 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEecc----CcceEEEec-----------cccccEEEEEe
Confidence 99998875 4445788898887754 588889999999998643 333343332 46678899988
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1196)
. +.+++ +++ .|++|+||+..+|++++++.+|.+.|.++.+.+. +.+.+|+-|+ .|+.|+..+.+
T Consensus 340 ~--~~~lv-sgs------~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~------~IkvWdl~~~~ 403 (537)
T KOG0274|consen 340 D--EPLLV-SGS------YDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT------TIKVWDLRTKR 403 (537)
T ss_pred c--CCEEE-EEe------cCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc------ceEeecCCchh
Confidence 7 66777 465 3679999999999999999999999999987776 8999999875 59999987652
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.-..++..+ ...|. .....+++|.+++.|+ +|++||..++.
T Consensus 404 ~c~~tl~~h-~~~v~--~l~~~~~~Lvs~~aD~---~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 404 KCIHTLQGH-TSLVS--SLLLRDNFLVSSSADG---TIKLWDAEEGE 444 (537)
T ss_pred hhhhhhcCC-ccccc--ccccccceeEeccccc---cEEEeecccCc
Confidence 001123332 33443 3456789999999999 99999988764
No 147
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=1e-13 Score=151.71 Aligned_cols=278 Identities=11% Similarity=0.126 Sum_probs=185.4
Q ss_pred eecCcEEEEEECCCC-CEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEee
Q 000992 114 RVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1196)
Q Consensus 114 ~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvs 192 (1196)
.|.+||.|++=.|.. .++|+|+.||.|++|+.. ...++. .|++|.+.|..|+..- +.+|- +|
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls----qR~~~~-----------~f~AH~G~V~Gi~v~~-~~~~t-vg 126 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS----QRECIR-----------TFKAHEGLVRGICVTQ-TSFFT-VG 126 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehh----hhhhhh-----------eeecccCceeeEEecc-cceEE-ec
Confidence 368899999999998 899999999999998632 111111 2446777888888887 54444 55
Q ss_pred ccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCC
Q 000992 193 EFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQI 271 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~ 271 (1196)
.|++||.|-. +|....+..+ ++.+..|.-+--++..|+++. .|.+|+.+-.. ...+.. +
T Consensus 127 -------dDKtvK~wk~-~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--------~i~IWD~~R~~Pv~smsw---G 186 (433)
T KOG0268|consen 127 -------DDKTVKQWKI-DGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--------QIDIWDEQRDNPVSSMSW---G 186 (433)
T ss_pred -------CCcceeeeec-cCCcceeeec-cccccccccccccccccccCc--------eeeecccccCCccceeec---C
Confidence 4799999999 8866665543 333466666667788898876 48889864211 112221 2
Q ss_pred CCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEE
Q 000992 272 DSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1196)
Q Consensus 272 ~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1196)
...|.++.|||--+ +||++.+|+ +|-|+|+....-..|-.+.. ....++|+|+. ..+.+++.|-.
T Consensus 187 ~Dti~svkfNpvETsILas~~sDr---sIvLyD~R~~~Pl~KVi~~m---RTN~IswnPea-fnF~~a~ED~n------- 252 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDR---SIVLYDLRQASPLKKVILTM---RTNTICWNPEA-FNFVAANEDHN------- 252 (433)
T ss_pred CCceeEEecCCCcchheeeeccCC---ceEEEecccCCccceeeeec---cccceecCccc-cceeecccccc-------
Confidence 35689999999765 788888999 89999987654322212211 11568999954 33444444322
Q ss_pred EeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcccc
Q 000992 351 WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED 430 (1196)
Q Consensus 351 ~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~ 430 (1196)
+.+.+.+ ++-.|.-.+ ..|-+.|.+|+|||.| +-+++++-|.+|+||.......-..
T Consensus 253 ------------------lY~~DmR--~l~~p~~v~-~dhvsAV~dVdfsptG--~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 253 ------------------LYTYDMR--NLSRPLNVH-KDHVSAVMDVDFSPTG--QEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred ------------------ceehhhh--hhcccchhh-cccceeEEEeccCCCc--chhccccccceEEEeecCCCcchhh
Confidence 2222322 222222211 2578899999999999 8999999999999999874211100
Q ss_pred ccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 431 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 431 ~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
..- ..-..|.++.||-|.+++.+|+++ ..+.+|..
T Consensus 310 Yht-----------kRMq~V~~Vk~S~Dskyi~SGSdd--~nvRlWka 344 (433)
T KOG0268|consen 310 YHT-----------KRMQHVFCVKYSMDSKYIISGSDD--GNVRLWKA 344 (433)
T ss_pred hhH-----------hhhheeeEEEEeccccEEEecCCC--cceeeeec
Confidence 000 011268999999999999999987 46778864
No 148
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=5.6e-13 Score=142.79 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=114.0
Q ss_pred EEEEEEccCCCEEEEEEC----------CCcEEEEEC--CCCeEEEeee-ecCcEEEEEECCCCCEEEEEeC--CceEEE
Q 000992 78 ITAFDYLMEKEALIVGTS----------SGLLLLHSV--DGNATEVVGR-VEGGVRFISPSPDGDLLGVTTG--FGQILV 142 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~----------dG~I~lw~~--~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~--d~tV~l 142 (1196)
=..+.|+|+|+.||+-.. -|+..||-. .+...+.+.- .++.|.+++|||+|+.+|++.+ +++|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 357899999999987654 133444443 4444443332 2456999999999999988864 468888
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
|+...+++.... ...+..|.|||+|+++| +++.+. ..+.+++||.++.+.+.+.+..
T Consensus 88 yd~~~~~i~~~~------------------~~~~n~i~wsP~G~~l~-~~g~~n---~~G~l~~wd~~~~~~i~~~~~~- 144 (194)
T PF08662_consen 88 YDVKGKKIFSFG------------------TQPRNTISWSPDGRFLV-LAGFGN---LNGDLEFWDVRKKKKISTFEHS- 144 (194)
T ss_pred EcCcccEeEeec------------------CCCceEEEECCCCCEEE-EEEccC---CCcEEEEEECCCCEEeeccccC-
Confidence 876555444332 12457899999999999 676432 3478999999888888776633
Q ss_pred CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
....++|||||+++|++...+....+..+++|+-+|....
T Consensus 145 -~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 145 -DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred -cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 3689999999999999875422223467899998886544
No 149
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7e-13 Score=159.52 Aligned_cols=225 Identities=13% Similarity=0.076 Sum_probs=137.0
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d~~~ 151 (1196)
..+.+.+|||||+.|+.++.. ..|.+||+.+++...+....+.+.+.+|||||+.||.+ +.++...+|..+-+.-.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 468899999999999988743 35999999988766554456677899999999999864 56777666643211100
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
...+. .+.......+|+|||+++++ .+.. .+...|.+.+..+|....... ..+.....+||
T Consensus 276 ~~~lt--------------~~~~~~~~~~wSpDG~~l~f-~s~~---~g~~~Iy~~~~~~g~~~~lt~-~g~~~~~~~~S 336 (427)
T PRK02889 276 LRRLT--------------QSSGIDTEPFFSPDGRSIYF-TSDR---GGAPQIYRMPASGGAAQRVTF-TGSYNTSPRIS 336 (427)
T ss_pred cEECC--------------CCCCCCcCeEEcCCCCEEEE-EecC---CCCcEEEEEECCCCceEEEec-CCCCcCceEEC
Confidence 11111 11123356889999999984 3311 122344444554555444332 12233568999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
|||++||.++...+ ...|.+|+..+..... +.. .......+|||||+.|+..+.++....+.+-+.... .
T Consensus 337 pDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~--lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~---~ 406 (427)
T PRK02889 337 PDGKLLAYISRVGG---AFKLYVQDLATGQVTA--LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR---I 406 (427)
T ss_pred CCCCEEEEEEccCC---cEEEEEEECCCCCeEE--ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCC---c
Confidence 99999998876432 3468889865433222 221 123467899999999999987764333333333321 1
Q ss_pred EEEEEEecCCcEEEEEcc
Q 000992 312 KYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp 329 (1196)
.+.+..+........|+|
T Consensus 407 ~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGP 424 (427)
T ss_pred eEEeecCCCCCCCCccCC
Confidence 223322222224567776
No 150
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=6.2e-12 Score=136.05 Aligned_cols=283 Identities=14% Similarity=0.131 Sum_probs=181.8
Q ss_pred CCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 73 EPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 73 ~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
.|.+.|.+|.|+|.++.|.+++=||++++|+..+..+...=.|..+|.+.+|-++ ..+++++-||+|++.+..... +
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--c
Confidence 3468999999999999999999999999999988655433346889999999986 788999999999876533211 1
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.|...|+..+.+|..++--..++ +++ .|++|++||..+-...-+++. ...|.++ +-
T Consensus 88 --------------~~igth~~~i~ci~~~~~~~~vI-sgs------WD~~ik~wD~R~~~~~~~~d~-~kkVy~~--~v 143 (323)
T KOG1036|consen 88 --------------DQIGTHDEGIRCIEYSYEVGCVI-SGS------WDKTIKFWDPRNKVVVGTFDQ-GKKVYCM--DV 143 (323)
T ss_pred --------------eeeccCCCceEEEEeeccCCeEE-Ecc------cCccEEEEecccccccccccc-CceEEEE--ec
Confidence 12225667889999986444455 355 469999999954333333332 2234444 45
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
.|+.|..|..+ ..|.+|+.-.+.. -|..+ ......+.+|+.-|+++=-|+++-+| .|-+
T Consensus 144 ~g~~LvVg~~~------r~v~iyDLRn~~~-~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG---RVav---------- 203 (323)
T KOG1036|consen 144 SGNRLVVGTSD------RKVLIYDLRNLDE-PFQRRESSLKYQTRCVALVPNGEGYVVSSIEG---RVAV---------- 203 (323)
T ss_pred cCCEEEEeecC------ceEEEEEcccccc-hhhhccccceeEEEEEEEecCCCceEEEeecc---eEEE----------
Confidence 67777776654 3588898422211 11111 11124588999999888888888777 3321
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCC
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFP 391 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~ 391 (1196)
.|...+ ++... ..++|.-... .-+|.. .+
T Consensus 204 ----E~~d~s-------~~~~s-------------kkyaFkCHr~------~~~~~~-~~-------------------- 232 (323)
T KOG1036|consen 204 ----EYFDDS-------EEAQS-------------KKYAFKCHRL------SEKDTE-II-------------------- 232 (323)
T ss_pred ----EccCCc-------hHHhh-------------hceeEEeeec------ccCCce-EE--------------------
Confidence 110000 00000 0011110000 001111 11
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 392 ~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
-+|++++|+|-. +.||+|++||.|-+|+..+...+..+.+. ..+|..++|+.||..||+++.
T Consensus 233 yPVNai~Fhp~~--~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~------------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIH--GTFATGGSDGIVNIWDLFNRKRLKQLAKY------------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEecccc--ceEEecCCCceEEEccCcchhhhhhccCC------------CCceEEEEeccCCCeEEEEec
Confidence 268999999987 89999999999999999875544223221 246999999999999999875
No 151
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.7e-13 Score=159.52 Aligned_cols=223 Identities=16% Similarity=0.139 Sum_probs=141.5
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCc--eEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFG--QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~--tV~l~~~~~d~ 149 (1196)
..+.+.+|+|||+.|+.++.. ..|.+||..+++...+..+.+...+.+|||||+.|+.+ +.++ .|.+|+.....
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 468899999999999988743 46999999988766555445556689999999988765 4454 46666532211
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
+. .+. .+......++|+|||++|+ .++.. .+...|.++|..+|+...... .......++
T Consensus 284 ~~--~lt--------------~~~~~~~~~~~spDG~~l~-f~sd~---~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~ 342 (433)
T PRK04922 284 LT--RLT--------------NHFGIDTEPTWAPDGKSIY-FTSDR---GGRPQIYRVAASGGSAERLTF-QGNYNARAS 342 (433)
T ss_pred eE--ECc--------------cCCCCccceEECCCCCEEE-EEECC---CCCceEEEEECCCCCeEEeec-CCCCccCEE
Confidence 11 111 1112235789999999998 44421 123457777876676554332 223345789
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|||||+.||..+.+.+ ...|.+|+..+..... +. + .....+.+|||||+.|+..+.+++...+.+|+..+..
T Consensus 343 ~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~~--Lt-~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~- 414 (433)
T PRK04922 343 VSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVRT--LT-P-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV- 414 (433)
T ss_pred ECCCCCEEEEEECCCC---ceeEEEEECCCCCeEE--CC-C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-
Confidence 9999999998765422 4578899975433322 22 1 1235578999999999988876544467777775421
Q ss_pred EEEEEEEEecCCcEEEEEcc
Q 000992 310 YLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1196)
.+.+..+........|+|
T Consensus 415 --~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 --RQRLVSADGEVREPAWSP 432 (433)
T ss_pred --eEEcccCCCCCCCCccCC
Confidence 233332212225567776
No 152
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.5e-12 Score=153.91 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=134.2
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC---CceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~---d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.+||.++.....+..+...|.+.+|||||+.||.++. +.+|.+|+...... ..+. .+..
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~--------------~~~g 246 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVG--------------NFPG 246 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEee--------------cCCC
Confidence 788899988766655555778999999999999999873 45777775321111 1111 1123
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+...+|||||+.|+.+.+. .+...|.+||..+|++.. +..+.+.....+|+|||+.||.++.... ...|.+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g---~~~Iy~ 318 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQ----GGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSG---SPQLYV 318 (435)
T ss_pred cccCcEECCCCCEEEEEEec----CCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCC---CCeEEE
Confidence 44678999999988733332 134568888997776654 3335556678999999999998875422 356777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
++.+|.....++. ....+...+|||||+.||....+.+...|.+|+...... +.+.. ........|+|++..
T Consensus 319 ~d~~g~~~~~lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~-~~~~~~p~~spDG~~ 390 (435)
T PRK05137 319 MNADGSNPRRISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILTS-GFLVEGPTWAPNGRV 390 (435)
T ss_pred EECCCCCeEEeec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---EeccC-CCCCCCCeECCCCCE
Confidence 8877643332221 123466789999999999987654334688888754322 11211 111245789999875
No 153
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.51 E-value=3.4e-12 Score=155.17 Aligned_cols=272 Identities=12% Similarity=0.034 Sum_probs=186.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-E-eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-V-VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~-vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
..++...|. ...+.+++.+++|++|+..++... . .-.|.++|+++++.--+..|.+|+.|.|+++|+ ..++.
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd----~~sg~ 282 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD----CSTGE 282 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe----cCCCc
Confidence 457777777 567888999999999999887543 2 334699999999988789999999999999876 22334
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
+.+... +|.+.+.++.-. +-+++ +++ .|.+||||+.++|+++.++.+|.+.|.++...
T Consensus 283 C~~~l~-----------gh~stv~~~~~~--~~~~~-sgs------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 283 CTHSLQ-----------GHTSSVRCLTID--PFLLV-SGS------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-- 340 (537)
T ss_pred EEEEec-----------CCCceEEEEEcc--CceEe-ecc------CCceEEEEeccCcceEEEeccccccEEEEEec--
Confidence 433322 555666666643 33455 344 57999999998899999999999999999988
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE--EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSF--DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f--~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
+.++.+|+.|. .|++|+.. .+++ .+.+ |..+|.++.+.+. ..+.+|+.|+ +|++||..+.. .+
T Consensus 341 ~~~lvsgs~d~------~v~VW~~~---~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~---~IkvWdl~~~~-~c 405 (537)
T KOG0274|consen 341 EPLLVSGSYDG------TVKVWDPR---TGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDT---TIKVWDLRTKR-KC 405 (537)
T ss_pred CCEEEEEecCc------eEEEEEhh---hceeeeeecC-CcceEEEEEecCc-ceEEeeeecc---ceEeecCCchh-hh
Confidence 88999999863 69999965 3332 2334 5788999987776 9999999998 99999999852 12
Q ss_pred EEEEEEecCCcEEEEEccCC-CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 312 KYEIRYLRRDGIRFMWHPTK-PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~-~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
.+.+..|. .+.++-.- ...|...+ .|| +|++|+..... +.++++.
T Consensus 406 ~~tl~~h~----~~v~~l~~~~~~Lvs~~------------------------aD~-~Ik~WD~~~~~-----~~~~~~~ 451 (537)
T KOG0274|consen 406 IHTLQGHT----SLVSSLLLRDNFLVSSS------------------------ADG-TIKLWDAEEGE-----CLRTLEG 451 (537)
T ss_pred hhhhcCCc----ccccccccccceeEecc------------------------ccc-cEEEeecccCc-----eeeeecc
Confidence 22232211 11100000 01111111 233 56666554322 3344433
Q ss_pred --CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 391 --PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 391 --~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
...|..+++. + ..+++++.||++++|++.+..+.
T Consensus 452 ~~~~~v~~l~~~-~---~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 452 RHVGGVSALALG-K---EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred CCcccEEEeecC-c---ceEEEEecCCeeEEEecccCchh
Confidence 3678888877 2 47888889999999999864433
No 154
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=2.6e-13 Score=146.68 Aligned_cols=322 Identities=15% Similarity=0.157 Sum_probs=189.9
Q ss_pred EEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCC
Q 000992 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1196)
Q Consensus 121 ~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~ 200 (1196)
-.+|||+|+++|+++.-. +++ |+-+.+ .++..- .--+.|..|-|+.|..++. ++.. .
T Consensus 13 ~c~fSp~g~yiAs~~~yr-lvi--Rd~~tl---q~~qlf-----------~cldki~yieW~ads~~il-C~~y-----k 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYR-LVI--RDSETL---QLHQLF-----------LCLDKIVYIEWKADSCHIL-CVAY-----K 69 (447)
T ss_pred ceeECCCCCeeeeeeeeE-EEE--eccchh---hHHHHH-----------HHHHHhhheeeeccceeee-eeee-----c
Confidence 467999999999998763 333 432211 111100 0013567899999999988 4432 3
Q ss_pred CCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEE
Q 000992 201 HKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLK 279 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~la 279 (1196)
+..|.+|+...-+-... -++..|+ .+++|||||+.|...+.. ...|.+|..|...- .-++-+. ..+..++
T Consensus 70 ~~~vqvwsl~Qpew~ckIdeg~agl-s~~~WSPdgrhiL~tseF-----~lriTVWSL~t~~~--~~~~~pK-~~~kg~~ 140 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKIDEGQAGL-SSISWSPDGRHILLTSEF-----DLRITVWSLNTQKG--YLLPHPK-TNVKGYA 140 (447)
T ss_pred cceEEEEEeecceeEEEeccCCCcc-eeeeECCCcceEeeeecc-----eeEEEEEEecccee--EEecccc-cCceeEE
Confidence 57999999854444333 3555554 899999999877766654 35788899875332 2233222 3478999
Q ss_pred EccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCe
Q 000992 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1196)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1196)
|+|||++.|..+.....+.|+|...+. |.+-.+...+..+-+.+.|+|+|.. |++|..--.+.++.+
T Consensus 141 f~~dg~f~ai~sRrDCkdyv~i~~c~~--W~ll~~f~~dT~DltgieWsPdg~~-laVwd~~Leykv~aY---------- 207 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCKDYVQISSCKA--WILLKEFKLDTIDLTGIEWSPDGNW-LAVWDNVLEYKVYAY---------- 207 (447)
T ss_pred ECCCCceeeeeecccHHHHHHHHhhHH--HHHHHhcCCCcccccCceECCCCcE-EEEecchhhheeeee----------
Confidence 999999999998765333455543332 3333333332222366889999865 666642111111100
Q ss_pred eEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-------------
Q 000992 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD------------- 426 (1196)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~------------- 426 (1196)
+..-.+..|+|||.+ +.||+|+.|+.+++-+--+-.
T Consensus 208 -----------------------------e~~lG~k~v~wsP~~--qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~d 256 (447)
T KOG4497|consen 208 -----------------------------ERGLGLKFVEWSPCN--QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHD 256 (447)
T ss_pred -----------------------------eeccceeEEEecccc--ceEEeeccchhhhhhceeeeeehhhhccchhccC
Confidence 112246788999988 899999999888775422100
Q ss_pred -cccccc---------CC-ceeeee----------------------ec--c------cccCCcEEEEEEecCCeEEEEE
Q 000992 427 -MLEDLE---------GT-EFVVEA----------------------CI--S------ETAFGSVIHLIWLGSHLLLSVS 465 (1196)
Q Consensus 427 -~~~~~~---------g~-~~~~~~----------------------~~--~------~~~~~~v~~l~~~~d~~lla~~ 465 (1196)
+...+. ++ .....+ .+ . ....-.+--++|++|.+++|+-
T Consensus 257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence 000000 00 000000 00 0 1112256789999999999998
Q ss_pred ecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCC
Q 000992 466 HHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGG 545 (1196)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG 545 (1196)
.+...+-+++|++..- ++ .....-..+|.+..+.| ..-.+++-+..-
T Consensus 337 nd~~PnalW~Wdlq~l----------~l----------------------~avLiQk~piraf~WdP-~~prL~vctg~s 383 (447)
T KOG4497|consen 337 NDKYPNALWLWDLQNL----------KL----------------------HAVLIQKHPIRAFEWDP-GRPRLVVCTGKS 383 (447)
T ss_pred cCCCCceEEEEechhh----------hh----------------------hhhhhhccceeEEEeCC-CCceEEEEcCCc
Confidence 8877788888887210 00 00112245677777777 555666666666
Q ss_pred eEEEEe
Q 000992 546 KISEYM 551 (1196)
Q Consensus 546 ~v~~~~ 551 (1196)
++|.|.
T Consensus 384 rLY~W~ 389 (447)
T KOG4497|consen 384 RLYFWA 389 (447)
T ss_pred eEEEEc
Confidence 777774
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.51 E-value=4.6e-10 Score=129.63 Aligned_cols=286 Identities=19% Similarity=0.248 Sum_probs=186.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe--EEEeeeec-CcEEEEEE-CCCCC-EEEEEeC-CceEEEEeccC-
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--TEVVGRVE-GGVRFISP-SPDGD-LLGVTTG-FGQILVMTHDW- 147 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~--~e~vg~~~-~~I~~~aw-SPDg~-~LA~~s~-d~tV~l~~~~~- 147 (1196)
.+.+..+.|.+.+..++.++.|+.+.+|+...+. ...+.... ..+..+.+ +|++. .++..+. |+++.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 4689999999999999999999999999998763 44333323 36888888 99998 5555555 88999887542
Q ss_pred -ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 148 -DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 148 -d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
....... .|...+..++|+|+|++++ +++. .++.+++|+..++....+..+|...+.
T Consensus 145 ~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 145 GKLIRTLE----------------GHSESVTSLAFSPDGKLLA-SGSS-----LDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred CeEEEEEe----------------cCcccEEEEEECCCCCEEE-ecCC-----CCCceEEEEcCCCceEEeeccCCCceE
Confidence 2222221 4456678999999999887 4431 268999999977888888888999999
Q ss_pred EEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 227 VLEWMPSGA-NIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 227 slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.++|+|+|. .+++++.+ ..|.+|+.. |..... .+..+ ...+ -..|+|++..+++++.++ .+++|+.
T Consensus 203 ~~~~~~~~~~~~~~~~~d------~~i~~wd~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~d~---~~~~~~~ 270 (466)
T COG2319 203 SLAFSPDGGLLIASGSSD------GTIRLWDLSTGKLLRS-TLSGH-SDSV-VSSFSPDGSLLASGSSDG---TIRLWDL 270 (466)
T ss_pred EEEEcCCcceEEEEecCC------CcEEEEECCCCcEEee-ecCCC-Ccce-eEeECCCCCEEEEecCCC---cEEEeee
Confidence 999999998 66664554 468899644 322221 12222 2222 228999999999999998 9999998
Q ss_pred cCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
..... ....+..+......+.|+|++.. +.....++. +.+|++........+.
T Consensus 271 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~-------------------------~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 271 RSSSS-LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGT-------------------------VRLWDLETGKLLSSLT 323 (466)
T ss_pred cCCCc-EEEEEecCCccEEEEEECCCCCE-EEEeeCCCc-------------------------EEEEEcCCCceEEEee
Confidence 75432 11122222222366788885554 333433332 2222221111111111
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEE-ECCCcEEEEeCCCC
Q 000992 385 LFSLKFPTAVTEMAFYSKSSKNCLAAI-LSDGCLCVVDLPAP 425 (1196)
Q Consensus 385 ~~~l~~~~~V~~Vafspdg~~~~lAs~-~~dg~v~lw~~~~~ 425 (1196)
...|...|..+.|++++ ..++.+ ..|+.+.+|+....
T Consensus 324 --~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 324 --LKGHEGPVSSLSFSPDG--SLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred --ecccCCceEEEEECCCC--CEEEEeecCCCcEEeeecCCC
Confidence 12355568899994342 355555 68899999998753
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.2e-08 Score=117.64 Aligned_cols=251 Identities=14% Similarity=0.151 Sum_probs=160.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+....|+..++.|++...++-|+.|-+ +.+. |--. +. .-...+.|.+|.|..||..+|++.+||.|++
T Consensus 73 sV~vvTWNe~~QKLTtSDt~GlIiVWml--ykgs--W~EE-----Mi--NnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTSDTSGLIIVWML--YKGS--WCEE-----MI--NNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred eEEEEEeccccccccccCCCceEEEEee--eccc--HHHH-----Hh--hCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 6777889998898988878888999988 5543 2110 10 0111356999999999999999999999999
Q ss_pred EECCCCeE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee----------------------eeecc
Q 000992 102 HSVDGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY----------------------ENPLE 156 (1196)
Q Consensus 102 w~~~~~~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~----------------------~~~l~ 156 (1196)
=++++.++ +..|.+ ...+.||||.+.+..+-.+|...+.+..++-.. ++.+.
T Consensus 142 GsvdGNRIwgKeLkg~~---l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKGQL---LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred Eeeccceecchhcchhe---ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 88888765 344443 335679999999888888887777654332211 11111
Q ss_pred cccCccccc-----------cCccc-------------cCCCCeEEEEEccCCceEEEeeccccc---cCCCCEEEEEEC
Q 000992 157 ELAEGFDVH-----------EPELS-------------SSFSFKSPISWRGDGKYFATLSEFCNS---SKLHKRLKVWER 209 (1196)
Q Consensus 157 ~~~~~~~Vs-----------~tqf~-------------~~~~~v~~isWspDG~~lAsvss~d~~---~~~d~~irVWd~ 209 (1196)
+.+ -++|- ....+ ...-.++.+.|+++|..|| +.+.+.. ++..+.|..|.+
T Consensus 219 ~g~-~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLA-vcG~~~da~~~~d~n~v~Fysp 296 (1189)
T KOG2041|consen 219 TGP-YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLA-VCGNDSDADEPTDSNKVHFYSP 296 (1189)
T ss_pred cCc-cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEE-EccCcccccCccccceEEEecc
Confidence 111 00010 00000 0112467789999999999 7764422 133458999999
Q ss_pred CCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 210 DSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 210 ~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
-|+...++.-...-+++++|--.|-.||-+-+. .|-|=+ ++ | ...|-.-.+.++-
T Consensus 297 -~G~i~gtlkvpg~~It~lsWEg~gLriA~Avds-------fiyfan----------IR-P------~ykWgy~e~TvVy 351 (1189)
T KOG2041|consen 297 -YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS-------FIYFAN----------IR-P------EYKWGYIEETVVY 351 (1189)
T ss_pred -chhheEEEecCCceeeeeEEcCCceEEEEEecc-------eEEEEe----------ec-c------cceEEEeeeEEEE
Confidence 999999998767778999999999999887542 232211 11 1 1223332333332
Q ss_pred EE--ccCCcceEEEEEecCCEEEEEE
Q 000992 290 VV--RFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 290 ~~--~d~~~~~V~lW~~~n~~wylkq 313 (1196)
.. .+.+...|.+||+.+..-|+|.
T Consensus 352 ~y~~~e~p~y~i~Fwdtk~nek~vK~ 377 (1189)
T KOG2041|consen 352 VYQKEELPQYGIMFWDTKTNEKTVKT 377 (1189)
T ss_pred EEccCCCcceEEEEEecccChhhhhh
Confidence 22 2334457999999987666653
No 157
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.2e-12 Score=157.50 Aligned_cols=221 Identities=13% Similarity=0.126 Sum_probs=146.1
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000992 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG 97 (1196)
.+...+|.+|+..|++++. ..+|+.|++ ..++.. . +..+ .+.+.++.|||||+.|+.+ +.+|
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl--~~G~~~-~-------l~~~----~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTL--ANGAVR-Q-------VASF----PRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEEC--CCCCeE-E-------ccCC----CCCcCCeEECCCCCEEEEEEcCCC
Confidence 6778999999999988753 447999998 444321 1 1111 1234568999999999876 4455
Q ss_pred --cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC-ceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+|.+||.+++.+..+......+...+|||||+.|+.++.+ +...+|..+-+.-....+.. ...
T Consensus 266 ~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--------------~~~ 331 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--------------EGS 331 (429)
T ss_pred CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec--------------CCC
Confidence 4888999988776444335568899999999999998864 34444432111100011110 011
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.....+|||||+++|+++. + .+...|.+||..+|+....... ....+.+|||||+.|+.++.+.. ...+.+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~-~---~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~---~~~l~~ 402 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSS-N---GGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGM---GSVLNL 402 (429)
T ss_pred CccCEEECCCCCEEEEEEc-c---CCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCC---ceEEEE
Confidence 2356899999999984333 2 1346799999978876654432 23457899999999999987643 345777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
++.+|.... .++. +.+.+...+|||
T Consensus 403 ~~~~G~~~~--~l~~-~~~~~~~p~Wsp 427 (429)
T PRK03629 403 VSTDGRFKA--RLPA-TDGQVKFPAWSP 427 (429)
T ss_pred EECCCCCeE--ECcc-CCCCcCCcccCC
Confidence 888876543 3443 245688999998
No 158
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=2.4e-11 Score=141.25 Aligned_cols=276 Identities=14% Similarity=0.069 Sum_probs=164.5
Q ss_pred EEEECCCcEEEEECCC-CeEEEeeee--cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCc-eeeeeecccccCccccc
Q 000992 91 IVGTSSGLLLLHSVDG-NATEVVGRV--EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWD-LLYENPLEELAEGFDVH 165 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~-~~~e~vg~~--~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs 165 (1196)
++...+|.|.+|+..+ ++++.+... .+....+++||||+.|.+++. ++.|.+|..+-+ .+.......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-------- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-------- 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--------
Confidence 3446789999999964 444433322 356788999999999987754 677877753211 011110000
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCc---EEEEeccCCCceeEEEEcCCCCeEEEEe
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGT---LQASSELKAFMGAVLEWMPSGANIAAVY 241 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~---l~~~~e~~~~~v~slawsPdG~~IAs~s 241 (1196)
.......++|+|||+++. +++. .++.|.+|+.+ .|. ......+. ...+.++++|+|+++.++.
T Consensus 78 ------~~~~p~~i~~~~~g~~l~-v~~~-----~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 78 ------LPGSPTHISTDHQGRFLF-SASY-----NANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ------CCCCceEEEECCCCCEEE-EEEc-----CCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEee
Confidence 012346899999999988 5552 35899999885 343 22332222 2347789999999997766
Q ss_pred cCCCCCCCCeEEEEeCC--CeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecC--CEEEEEEE
Q 000992 242 DRKSENKCPSIVFYERN--GLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSN--NHWYLKYE 314 (1196)
Q Consensus 242 ~d~~~~~~~~V~~~e~n--Gl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n--~~wylkq~ 314 (1196)
.. ...|.+|+.+ |..... ...+.+.......++|+|||++|.++.. ++ +|.+|++.. ....+.+.
T Consensus 145 ~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~---~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 145 LK-----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS---SVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CC-----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC---EEEEEEEeCCCCCEEEEEE
Confidence 54 3579999864 322100 0011111234678999999999999876 44 899999973 34434455
Q ss_pred EEEecCC------cEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 315 IRYLRRD------GIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 315 l~~~~~~------~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
+...+.. ...+.++|++.. +.+.+. ++.+.+ |+++. ++..+++... +|
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~-lyv~~~~~~~I~v----~~i~~---------~~~~~~~~~~----~~------- 271 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRH-LYACDRTASLISV----FSVSE---------DGSVLSFEGH----QP------- 271 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCE-EEEecCCCCeEEE----EEEeC---------CCCeEEEeEE----Ee-------
Confidence 4322211 135788998865 555543 333332 22221 2222222111 11
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCC
Q 000992 388 LKFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPA 424 (1196)
Q Consensus 388 l~~~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~ 424 (1196)
.....+.++|+||| +.|+++.. +++|.+|+++.
T Consensus 272 --~~~~p~~~~~~~dg--~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 272 --TETQPRGFNIDHSG--KYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred --ccccCCceEECCCC--CEEEEEEccCCcEEEEEEcC
Confidence 11233568999999 78877665 89999998863
No 159
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.51 E-value=1.2e-12 Score=153.36 Aligned_cols=228 Identities=11% Similarity=0.090 Sum_probs=178.3
Q ss_pred Eeee-cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 26 SALD-IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 26 ~~~d-~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
.+|. .|+..+++++.|..|+.|.+ .+.+- +.+ |++| ...|.+++..-++. |+++|=|.|+++|-.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~--~~~~P---~~~----LkgH----~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKL--SQAEP---LYT----LKGH----KSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred ceeccccCcceEeecccceEEEEec--CCCCc---hhh----hhcc----ccceeeeecCCcCc-eEecccccceEEecc
Confidence 4566 67778999999999999988 33321 222 6666 46899998888887 899999999999987
Q ss_pred CCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 105 DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
....-. ...|...|++++.=|++ .+++||.|++|++|.- ...+. .|.+|.+-|..++.=++
T Consensus 130 ~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l~----------------tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 130 GELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLLK----------------TFSGHTDCVRGLAVLDD 190 (745)
T ss_pred hhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cchhh----------------hhccchhheeeeEEecC
Confidence 643223 44479999999999998 8899999999999853 22221 35588899999999999
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
+.++. ++ .|+.||.|+. +|+++....+|...+.+++-.+++..|+|++.|. ++++|... .....
T Consensus 191 ~~flS-cs-------NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDr------tlriW~~~-e~~q~ 254 (745)
T KOG0301|consen 191 SHFLS-CS-------NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDR------TLRIWKKD-ECVQV 254 (745)
T ss_pred CCeEe-ec-------CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCc------eEEEeecC-ceEEE
Confidence 87665 44 4799999999 9999999999999999999999999999999874 69999865 33333
Q ss_pred EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
.++| .-.||++..=++|.+ ++|++|+ .|++|+...-.|
T Consensus 255 I~lP---ttsiWsa~~L~NgDI-vvg~SDG---~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 255 ITLP---TTSIWSAKVLLNGDI-VVGGSDG---RVRVFTVDKDRK 292 (745)
T ss_pred EecC---ccceEEEEEeeCCCE-EEeccCc---eEEEEEeccccc
Confidence 3343 336999999899985 5666777 899999875443
No 160
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7.6e-13 Score=159.36 Aligned_cols=215 Identities=15% Similarity=0.133 Sum_probs=140.5
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG 97 (1196)
.+...+|.+|++.|++++.+ .+|+.||+ .+++.+ .+.. +. +...+++|+|||+.|++++ .+|
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl--~tg~~~-~l~~----~~-------g~~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDL--RSGARK-VVAS----FR-------GHNGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeC--CCCceE-EEec----CC-------CccCceeECCCCCEEEEEEecCC
Confidence 57788999999999988653 36999998 444321 1111 11 2344689999999999875 688
Q ss_pred cEEE--EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLL--HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~l--w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.+.| ||.+++.+..+..+...+.+.+|||||+.|+.++ .++...+|..+-+......+ ++..
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---------------~~~~ 335 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---------------GGRG 335 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---------------cCCC
Confidence 7655 5777776654444456688999999999998876 46777776422111000001 0111
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
..++|||||++|+ ..+ .++ +.+||..+|+......+. ...+++|+|||++|++++.+.+ ...+.+
T Consensus 336 --~~~~~SpDG~~ia-~~~------~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~---~~~l~~ 400 (429)
T PRK01742 336 --YSAQISADGKTLV-MIN------GDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL---GKVLQL 400 (429)
T ss_pred --CCccCCCCCCEEE-EEc------CCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC---ceEEEE
Confidence 3578999999998 444 234 445898788765544332 2367899999999999987543 223444
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccC
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCM 283 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpD 283 (1196)
++.+|..... ++. +.+.+...+|||-
T Consensus 401 ~~~~G~~~~~--l~~-~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKAR--LPG-SDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEE--ccC-CCCCCCCcccCCC
Confidence 5667765443 332 2456889999984
No 161
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=2.1e-12 Score=139.58 Aligned_cols=231 Identities=15% Similarity=0.156 Sum_probs=160.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC--EEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE--ALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~--~La~as~dG~I 99 (1196)
.+.++|. ++--+.++|.|-.|..||. ..+.. ..+ +..| .+.|+++.|.+... .|.+|++||.|
T Consensus 45 sitavAV--s~~~~aSGssDetI~IYDm--~k~~q-lg~------ll~H----agsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 45 SITALAV--SGPYVASGSSDETIHIYDM--RKRKQ-LGI------LLSH----AGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ceeEEEe--cceeEeccCCCCcEEEEec--cchhh-hcc------eecc----ccceEEEEecCCcchhheeeecCCCcE
Confidence 4555555 3455666677888999998 33221 111 2222 57999999999876 89999999999
Q ss_pred EEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeE
Q 000992 100 LLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 100 ~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.+|+...=+ +...-.|.+.|+.++..|.|++-.++++|+.+.+|+. .+....-..+... -.
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-----------------at 172 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-----------------AT 172 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc-----------------ce
Confidence 999987532 2344457888999999999999999999999977651 1221112222221 14
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
.|.|+|.|.+|+ ++. ++.|-||..++..+....+.. ..+.++-|= +++.+++|.++ ..|.+||.
T Consensus 173 ~v~w~~~Gd~F~-v~~-------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~------~~i~~~D~ 236 (362)
T KOG0294|consen 173 LVSWSPQGDHFV-VSG-------RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN------EWISLKDT 236 (362)
T ss_pred eeEEcCCCCEEE-EEe-------ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC------ceEEEecc
Confidence 599999999999 765 578999999666555544322 223455553 55566777665 36999998
Q ss_pred C-CeeEEEEEeccCCCCcEEEEEE--ccCCCeeEEEEccCCcceEEEEEecC
Q 000992 258 N-GLERSSFDINEQIDSTVELLKW--NCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 258 n-Gl~~~~f~l~~~~~~~V~~laW--SpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+ +.-..+| ..|+.+|.++.+ +|++.+|+++++|| .|++|++.-
T Consensus 237 ds~~~~~~~---~AH~~RVK~i~~~~~~~~~~lvTaSSDG---~I~vWd~~~ 282 (362)
T KOG0294|consen 237 DSDTPLTEF---LAHENRVKDIASYTNPEHEYLVTASSDG---FIKVWDIDM 282 (362)
T ss_pred CCCccceee---ecchhheeeeEEEecCCceEEEEeccCc---eEEEEEccc
Confidence 7 3333333 235678999884 79999999999999 999999863
No 162
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=4.5e-11 Score=138.93 Aligned_cols=274 Identities=13% Similarity=0.088 Sum_probs=165.6
Q ss_pred CEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECC-CCeE
Q 000992 33 NRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLLLLHSVD-GNAT 109 (1196)
Q Consensus 33 ~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG~I~lw~~~-~~~~ 109 (1196)
..+|++ ..+++|..|++. ..+... .+.+ .+. .+.+..++++||++.|.+++ .++.|..|+.+ ++.+
T Consensus 2 ~~~y~~~~~~~~I~~~~~~-~~g~l~-~~~~-------~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLN-HEGALT-LLQV-------VDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred eEEEEEcCCCCCEEEEEEC-CCCcee-eeeE-------Eec--CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce
Confidence 357887 447889999993 222211 1121 111 24677899999999987764 57889999986 3455
Q ss_pred EEeeee--cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 110 EVVGRV--EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 110 e~vg~~--~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
..++.+ .+....++|+|||++|.+++. ++.|.+|..+-+.......... .+......++++|||+
T Consensus 71 ~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 71 TFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII------------EGLEGCHSANIDPDNR 138 (330)
T ss_pred EEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec------------cCCCcccEeEeCCCCC
Confidence 433322 235678999999999998874 7788887532111000011000 0011235788999999
Q ss_pred eEEEeeccccccCCCCEEEEEECCC-CcEEE------EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDS-GTLQA------SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~-G~l~~------~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
++. ++.. ++.+|+|||.++ |.+.. .... ......++|+|||++++++... ..+|.+|+.+
T Consensus 139 ~l~-v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~ 206 (330)
T PRK11028 139 TLW-VPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKD 206 (330)
T ss_pred EEE-EeeC-----CCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeC
Confidence 987 5542 468999999855 44421 1111 2234789999999999888663 3589999864
Q ss_pred --CeeEEEEEec-cC----CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC--CEEEEEEEEEEecCCcEEEEEcc
Q 000992 259 --GLERSSFDIN-EQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 259 --Gl~~~~f~l~-~~----~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n--~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
|...-...+. .+ +......+.++|||++|.++... .++|.+|++.. ..+.+.+.+... ..+..+.|+|
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~ 283 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH 283 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC
Confidence 3221111121 11 11234469999999999998542 23899999853 233333333221 1235688999
Q ss_pred CCCceEEEEec-CCcEE
Q 000992 330 TKPLQLICWTL-DGQIT 345 (1196)
Q Consensus 330 ~~~~~L~~~~~-~g~~~ 345 (1196)
++.. |.+... ++.+.
T Consensus 284 dg~~-l~va~~~~~~v~ 299 (330)
T PRK11028 284 SGKY-LIAAGQKSHHIS 299 (330)
T ss_pred CCCE-EEEEEccCCcEE
Confidence 8876 555553 45443
No 163
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.7e-12 Score=138.78 Aligned_cols=268 Identities=10% Similarity=0.089 Sum_probs=189.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..+-|++.++.|.+.|=|+.+..++.. ..+. +.. +..+..+++.+|.++. .+++|+.||.|++
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~--~~~l--~~~----------~~~~~plL~c~F~d~~-~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVP--ANSL--KLK----------FKHGAPLLDCAFADES-TIVTGGLDGQVRR 79 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEecc--chhh--hhh----------eecCCceeeeeccCCc-eEEEeccCceEEE
Confidence 88899999999999999889989999883 2222 111 1124679999999865 6678999999999
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
+|++++....+|.|..+|.|+..+|--..+++||.|++|++|+ +-........+. ...|.+++-
T Consensus 80 ~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD----~R~~~~~~~~d~------------~kkVy~~~v 143 (323)
T KOG1036|consen 80 YDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD----PRNKVVVGTFDQ------------GKKVYCMDV 143 (323)
T ss_pred EEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEe----cccccccccccc------------CceEEEEec
Confidence 9999999889999999999999999999999999999999875 222222111111 124566665
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
+ |..|+ |+. .++.+.+||..+-...... .+....+.+|+.-|+|.=.|++|-++ +..|-++|..-
T Consensus 144 ~--g~~Lv-Vg~------~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG----RVavE~~d~s~ 210 (323)
T KOG1036|consen 144 S--GNRLV-VGT------SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG----RVAVEYFDDSE 210 (323)
T ss_pred c--CCEEE-Eee------cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc----eEEEEccCCch
Confidence 5 44566 665 4699999998554322211 23456789999999888777777764 56666777541
Q ss_pred ---eeEEEEEec---cCC---CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 260 ---LERSSFDIN---EQI---DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 260 ---l~~~~f~l~---~~~---~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
.+..-|..+ ..+ -..|++|+|+|-.+.||+|+.|| .|-+|+..|.+- ++|--.+ +++..+++|+-+
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG---~V~~Wd~~~rKr-l~q~~~~-~~SI~slsfs~d 285 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG---IVNIWDLFNRKR-LKQLAKY-ETSISSLSFSMD 285 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc---eEEEccCcchhh-hhhccCC-CCceEEEEeccC
Confidence 112223322 111 13699999999999999999999 999999998542 2221112 234477889988
Q ss_pred CCceEEEEe
Q 000992 331 KPLQLICWT 339 (1196)
Q Consensus 331 ~~~~L~~~~ 339 (1196)
|.. |++++
T Consensus 286 G~~-LAia~ 293 (323)
T KOG1036|consen 286 GSL-LAIAS 293 (323)
T ss_pred CCe-EEEEe
Confidence 864 77766
No 164
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.8e-14 Score=165.41 Aligned_cols=226 Identities=11% Similarity=0.139 Sum_probs=168.4
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
+.-+..-+..+.++.++...-+|..+. -.. +. .+.+| ...|-++.|+++-..|+.|+++|+|++||+
T Consensus 33 ~lk~~~s~r~~~~Gg~~~k~~L~~i~k--p~~---i~----S~~~h----espIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 33 CLKIRKSSRSLVTGGEDEKVNLWAIGK--PNA---IT----SLTGH----ESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred eeeeeccceeeccCCCceeeccccccC--Cch---hh----eeecc----CCcceeeecCcchhhhcccccCCceeeeeh
Confidence 333434445566666666565666621 111 11 13444 357999999999999999999999999999
Q ss_pred CCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc
Q 000992 105 DGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 105 ~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
+..++ ..+..|...+..+.|+|=|++.|+++.|..+++|+.-. .-+.+. |.+|...+..+.|+|
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----~Gc~~~-----------~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----KGCSHT-----------YKSHTRVVDVLRLSP 164 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----cCceee-----------ecCCcceeEEEeecC
Confidence 87653 44444578899999999999999999999998875221 111111 224555678899999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
||++++ +++ +|.+++|||...|++...++.|.+.+.++-|.|.--++|+|+.|. +|+||+.. .-
T Consensus 165 ~Gr~v~-~g~------ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~------tv~f~dle---tf 228 (825)
T KOG0267|consen 165 DGRWVA-SGG------EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR------TVRFWDLE---TF 228 (825)
T ss_pred CCceee-ccC------CcceeeeecccccccccccccccccccccccCchhhhhccCCCCc------eeeeeccc---ee
Confidence 999999 664 479999999989999999999999999999999999999999864 69999853 11
Q ss_pred EEEec-cCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 264 SFDIN-EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 264 ~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
+..-. .+....|.+++|+|||..+++|....
T Consensus 229 e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 229 EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 11111 33356799999999999999988765
No 165
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.49 E-value=1.7e-12 Score=146.51 Aligned_cols=238 Identities=13% Similarity=0.208 Sum_probs=165.1
Q ss_pred CEEEEEeCCCcEEEEecccccccccceee--ccc-cccccccCCCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCe
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKT--AIS-AEIEHIDLEPGDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNA 108 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~~ 108 (1196)
.+|.+.+..+.++.||.+ ......... -.| -.|++|. +.=.++.|++.. -.|++++.|++|.+||++...
T Consensus 138 ~iVAt~t~~~dv~Vfd~t--k~~s~~~~~~~~~Pdl~L~gH~----~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYT--KHPSKPKASGECRPDLRLKGHE----KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred cEEEecCCCCCEEEEEec--cCCCcccccccCCCceEEEeec----ccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 445555777789999983 332211110 000 0144442 234568898865 378899999999999996421
Q ss_pred -----E---EEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 109 -----T---EVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 109 -----~---e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+ .....|++.|..++|.|- ..++++++.|+.+.||+ |.| .....+.. .+|+..+.+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~---~~~~~~~~-----------~ah~~~vn~ 277 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN---TSKPSHSV-----------KAHSAEVNC 277 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC---CCCCcccc-----------cccCCceeE
Confidence 1 244557899999999996 56789999999999986 443 22222222 267788999
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEe
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e 256 (1196)
++|+|=+.++.+++| .|++|++||+++- +.+.++++|...|..|.|||.-. .+||++.| ..+.+|+
T Consensus 278 ~~fnp~~~~ilAT~S------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D------~rl~vWD 345 (422)
T KOG0264|consen 278 VAFNPFNEFILATGS------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD------RRLNVWD 345 (422)
T ss_pred EEeCCCCCceEEecc------CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC------CcEEEEe
Confidence 999997765542455 4799999998643 46778899999999999999876 56777765 4688998
Q ss_pred CC--CeeEE---------E--EEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecC
Q 000992 257 RN--GLERS---------S--FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 257 ~n--Gl~~~---------~--f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.+ |.... + | +++.|...|..++|+|+-. .+|+++.|. ++|||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF-~HgGH~~kV~DfsWnp~ePW~I~SvaeDN---~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLF-IHGGHTAKVSDFSWNPNEPWTIASVAEDN---ILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeE-EecCcccccccccCCCCCCeEEEEecCCc---eEEEeeccc
Confidence 54 22110 1 2 2234567899999999876 678888887 999999875
No 166
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=7.5e-13 Score=156.71 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=197.1
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCC--CeEEE---eee---ecCcEEEEEECC-CCCEEEEEeCCceEEEEeccC
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG--NATEV---VGR---VEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~--~~~e~---vg~---~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~ 147 (1196)
..++|+-.++-.+|+.|+.. ..+||..+. ....+ .+. ..-.+..+.|+. +.++||+++..|.|.+|+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln- 118 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN- 118 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC-
Confidence 46677777888888888744 566766543 11111 121 112356688863 56899999999999998743
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
.++.+..+ +-|..|.-.+.++.|++--.++. +++ ..|++||+||.....-..++.+-...+..
T Consensus 119 k~~rnk~l-----------~~f~EH~Rs~~~ldfh~tep~il-iSG-----SQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 119 KSIRNKLL-----------TVFNEHERSANKLDFHSTEPNIL-ISG-----SQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred ccccchhh-----------hHhhhhccceeeeeeccCCccEE-Eec-----CCCceEEEEeeecccccccccccchhhhc
Confidence 11222221 23556777889999998777666 454 36899999998777777777666677899
Q ss_pred EEEcCC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 228 LEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 228 lawsPd-G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+.|+|. |+.+|++.+. +.+++||.--...-++.+. .|.+.|..+.|+|++.+||+|+.|+ .|+||++..
T Consensus 182 V~fsp~~~~~F~s~~ds------G~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~~lATGGRDK---~vkiWd~t~ 251 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDS------GYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNREWLATGGRDK---MVKIWDMTD 251 (839)
T ss_pred eeeccCCCceEEEecCC------ceEEEeeccCchhHHHHhh-cccCceEEEeecCCCceeeecCCCc---cEEEEeccC
Confidence 999994 7788887663 5799998532222222232 3467899999999999999999999 999999986
Q ss_pred CEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 307 NHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
.....+..+. ...+ ..|+|-|+.+..|++.. .++...|.+|+++.--+|--+.
T Consensus 252 ~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcs-----------------------mv~dtsV~VWDvrRPYIP~~t~- 305 (839)
T KOG0269|consen 252 SRAKPKHTIN--TIAPVGRVKWRPARSYHLATCS-----------------------MVVDTSVHVWDVRRPYIPYATF- 305 (839)
T ss_pred CCccceeEEe--ecceeeeeeeccCccchhhhhh-----------------------ccccceEEEEeeccccccceee-
Confidence 5433333332 2334 77999999886544432 2244467888888766654332
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.+|.+.|..++|-.... ..|-+++.||+|..-.+.
T Consensus 306 --~eH~~~vt~i~W~~~d~-~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 306 --LEHTDSVTGIAWDSGDR-INLWSCSKDGTVLQHLFK 340 (839)
T ss_pred --eccCccccceeccCCCc-eeeEeecCccHHHHhhhh
Confidence 36889999999977331 567888888887654443
No 167
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.48 E-value=1.6e-12 Score=139.64 Aligned_cols=242 Identities=13% Similarity=0.128 Sum_probs=176.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.++++.|-|-..+|.++|.|+.+..+|.+ |.. .+-. ++- |.....|.++.|+|.|++|++|+.--+++|
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfs---K~s-aKrA-----~K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFS---KTS-AKRA-----FKV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecc---cHH-HHHH-----HHH--hhccceeeeEeecCCCceEEEecCCCceeE
Confidence 67888999999999999999999999974 221 0100 111 222357999999999999999999999999
Q ss_pred EECCCCeEEE----eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC-CCe
Q 000992 102 HSVDGNATEV----VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF-SFK 176 (1196)
Q Consensus 102 w~~~~~~~e~----vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~-~~v 176 (1196)
||.+|-++-. -..|.++|+++.+||.|++-+++|.||.|++| |-++..++.+.. .+|+ ..|
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Iklw----DGVS~rCv~t~~----------~AH~gsev 308 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLW----DGVSNRCVRTIG----------NAHGGSEV 308 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEee----ccccHHHHHHHH----------hhcCCcee
Confidence 9999866532 23468899999999999999999999999775 556655554433 0222 357
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--CCCc---eeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFM---GAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~~~---v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
++.-|.-||+|+. +|+ .|.++++|...+|..+....+ ..|. -..-.|+-.-.++...... ...
T Consensus 309 cSa~Ftkn~kyiL-sSG------~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa-----s~s 376 (430)
T KOG0640|consen 309 CSAVFTKNGKYIL-SSG------KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA-----SNS 376 (430)
T ss_pred eeEEEccCCeEEe-ecC------CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc-----cCc
Confidence 8999999999999 454 478999999999998876543 2221 1333455555555443322 245
Q ss_pred EEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 252 IVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 252 V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+.-|+ ||+.+..- +...+.+.|..+.-||.+....+++.|. .+++|...
T Consensus 377 lcsWdaRtadr~~l--~slgHn~a~R~i~HSP~~p~FmTcsdD~---raRFWyrr 426 (430)
T KOG0640|consen 377 LCSWDARTADRVAL--LSLGHNGAVRWIVHSPVEPAFMTCSDDF---RARFWYRR 426 (430)
T ss_pred eeeccccchhhhhh--cccCCCCCceEEEeCCCCCceeeecccc---eeeeeeec
Confidence 66677 66655442 2334567899999999999999999998 89999754
No 168
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4e-12 Score=146.70 Aligned_cols=279 Identities=20% Similarity=0.225 Sum_probs=185.1
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC--eEEEEecCC-
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRK- 244 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~--~IAs~s~d~- 244 (1196)
-|++|.+.|.+|+-.|-|++|| +|+ .|++||||...+|.++.+.. .++.|.+|+|+|.++ +||++-...
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wla-sGs------dDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLA-SGS------DDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eEeccCCeEEEEEecCCcceee-ecC------CCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 4569999999999999999999 676 57999999999999999887 677899999999987 355442211
Q ss_pred ---------------C----------CCCCCeEEEEeCCCeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 245 ---------------S----------ENKCPSIVFYERNGLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 245 ---------------~----------~~~~~~V~~~e~nGl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
+ ......|+.|.+..+..++ ..+...+...|.+|.|.-+|.+||+...++...
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 0 1113456677664222111 122223445799999999999999999887555
Q ss_pred eEEEEEecCCEEEEEEEEEEecCC--cEEEEEccCCCceEEEEecCCcEEEEEEE---------------Eeee--cCCC
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPLQLICWTLDGQITTYNFI---------------WTTA--VMEN 358 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~--~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~---------------~~~~--~~d~ 358 (1196)
.|-|.+++... .| ..|.... +..+.|||..+. |.+.++ ..+.+|++. -..+ +.+.
T Consensus 547 ~VliHQLSK~~---sQ-~PF~kskG~vq~v~FHPs~p~-lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 547 SVLIHQLSKRK---SQ-SPFRKSKGLVQRVKFHPSKPY-LFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred eEEEEeccccc---cc-CchhhcCCceeEEEecCCCce-EEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 78887776532 12 3342222 278999999886 667665 567777653 1222 4344
Q ss_pred eeEEEEcCCEEEEeeccccCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-c--------c
Q 000992 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD-M--------L 428 (1196)
Q Consensus 359 ~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~-~--------~ 428 (1196)
.+++..-.+++.+.++....-|= +++. |...|.+|+|++.- .++|+++.||++.++--.--. . +
T Consensus 621 nli~gs~d~k~~WfDldlsskPy----k~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPY----KTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchh----HHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 45555555566666766543321 2343 67889999999998 899999999999999642100 0 1
Q ss_pred ccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000992 429 EDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 429 ~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1196)
..+.||.. .....|.+..|+|..-.|.+++.+ +++.+|
T Consensus 695 K~L~gH~~--------~~~~gVLd~~wHP~qpWLfsAGAd--~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEK--------TNDLGVLDTIWHPRQPWLFSAGAD--GTIRLF 732 (733)
T ss_pred eeccCcee--------ecccceEeecccCCCceEEecCCC--ceEEee
Confidence 11222211 111268888999988777776554 455554
No 169
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.47 E-value=1.6e-12 Score=146.82 Aligned_cols=276 Identities=14% Similarity=0.138 Sum_probs=190.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCC-------eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-------~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~ 147 (1196)
+.-|.++.+|...+.+.+++ .|.|++||+... .+.+... ++.|++...+|||++|.+|+.-.+|.||+
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~r-dnyiRSckL~pdgrtLivGGeastlsiWD--- 493 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNR-DNYIRSCKLLPDGRTLIVGGEASTLSIWD--- 493 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCc-ccceeeeEecCCCceEEeccccceeeeee---
Confidence 44577799999999988776 678999998641 2334443 67899999999999999999999998865
Q ss_pred ceeeeee-cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 148 DLLYENP-LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 148 d~~~~~~-l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
..+... +..+..+ ..-....++-|||.+..-++. .|+.|+|||..+-.+...+.+|.....
T Consensus 494 -LAapTprikaelts----------sapaCyALa~spDakvcFscc-------sdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 494 -LAAPTPRIKAELTS----------SAPACYALAISPDAKVCFSCC-------SDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred -ccCCCcchhhhcCC----------cchhhhhhhcCCccceeeeec-------cCCcEEEEEcccceeeecccCCCCCce
Confidence 322211 1100000 001235688999999654232 368999999988888999999999999
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|..|+||..|=+|+-| ++|+-|+. .|....+.. ....|.+|..+|.++.||+|...+ .|.+-.+.
T Consensus 556 cIdis~dGtklWTGGlD------ntvRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens---~vevlh~s 622 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLD------NTVRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENS---NVEVLHTS 622 (705)
T ss_pred eEEecCCCceeecCCCc------cceeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccC---cEEEEecC
Confidence 99999999999999886 46999993 343222111 135699999999999999999998 67777776
Q ss_pred CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
..+-| .+..+..-+.++.|.+-|.. .+.+ | -++-| ..|-.|-..+.
T Consensus 623 kp~ky---qlhlheScVLSlKFa~cGkw--fvSt--G----------------------kDnlL-----nawrtPyGasi 668 (705)
T KOG0639|consen 623 KPEKY---QLHLHESCVLSLKFAYCGKW--FVST--G----------------------KDNLL-----NAWRTPYGASI 668 (705)
T ss_pred Cccce---eecccccEEEEEEecccCce--eeec--C----------------------chhhh-----hhccCccccce
Confidence 54422 33332212267777776543 1111 1 11111 12222333334
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
++..-.++|.+...|.|. +++++++.|..-.+|.+
T Consensus 669 FqskE~SsVlsCDIS~dd--kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSKESSSVLSCDISFDD--KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccccCcceeeeeccCc--eEEEecCCCcceEEEEE
Confidence 555566789999999998 89999999988888764
No 170
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.5e-12 Score=151.40 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=135.9
Q ss_pred CEEEEEEccCCCEEEE---EECCC--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEeccCcee
Q 000992 77 SITAFDYLMEKEALIV---GTSSG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLL 150 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~---as~dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~ 150 (1196)
...+=.|||||+.+++ ...+| .|.+.++++++...+....+.....+|||||+.||..+. +|.-.+|...|+.-
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 3456689999987543 33343 577789988877666666777788999999999998864 33222222223221
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~sla 229 (1196)
..... ....++. +........+|||||++||+++..+ +...|.+++.. .|..........+.+...+
T Consensus 266 ~g~~g----~~~~lt~----~~~~~~~~p~wSPDG~~Laf~s~~~----g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 266 TGAIG----KPRRLLN----EAFGTQGNPSFSPDGTRLVFVSNKD----GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred cCCCC----cceEeec----CCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECcccccceEEeccCCCCcccee
Confidence 10000 0000100 0112235689999999999443221 22345555542 1222222222334557889
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|||||+.||..+...+ ...|.+|+..+..... +.. ....+...+|||||+.|+....+.....|.+|++.+...
T Consensus 334 wSPDG~~Laf~~~~~g---~~~I~v~dl~~g~~~~--Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 334 WSPDGKKIAFCSVIKG---VRQICVYDLATGRDYQ--LTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ECCCCCEEEEEEcCCC---CcEEEEEECCCCCeEE--ccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 9999999998876432 4578899976543332 221 123567899999999998776654344688888876543
Q ss_pred EEEEEEEEecCCcEEEEEccC
Q 000992 310 YLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
..+...........|+|-
T Consensus 408 ---~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 408 ---RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ---EEeecCCCcccCceecCC
Confidence 122211111245678774
No 171
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=1.1e-12 Score=155.34 Aligned_cols=281 Identities=12% Similarity=0.140 Sum_probs=181.3
Q ss_pred eeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc-cCCCEEEEEECCCcEE
Q 000992 23 LQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEKEALIVGTSSGLLL 100 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~s-pd~~~La~as~dG~I~ 100 (1196)
.++++..++-..|.++.- -..+|..+.+ .....+.+. .++-+-. .-...+|.|. -+.+.||+++.+|.|.
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~--~~~~~~~~~-----~k~kqn~-~~S~~DVkW~~~~~NlIAT~s~nG~i~ 113 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPN--DFSEKCNHR-----FKTKQNK-FYSAADVKWGQLYSNLIATCSTNGVIS 113 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcc--cCCcceeee-----cccccce-eeehhhcccccchhhhheeecCCCcEE
Confidence 345555566555555533 3357777763 333223322 1110000 1235566775 3568999999999999
Q ss_pred EEECCC----CeEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCC
Q 000992 101 LHSVDG----NATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 101 lw~~~~----~~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+||+.- ..+.....|+..|.++.|++-. .+|++||.||+|++|+ |.-+... .|.+...
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~----------------t~~~nSE 177 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS----------------TFRSNSE 177 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc----------------cccccch
Confidence 999864 2334666789999999998864 5788999999999876 2211111 2334456
Q ss_pred CeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 175 FKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 175 ~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.|..|.|+| +|.+|| +.. ..|.++.||.. ..++...+..|.|.|.++.|+|++.+||+|++|+ .|
T Consensus 178 SiRDV~fsp~~~~~F~-s~~------dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK------~v 244 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFA-SIH------DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK------MV 244 (839)
T ss_pred hhhceeeccCCCceEE-Eec------CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc------cE
Confidence 788999997 567787 343 35899999974 3445555678999999999999999999999975 69
Q ss_pred EEEeCCCeeEEE-EEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEE-EEEEecCCcEEEEEcc
Q 000992 253 VFYERNGLERSS-FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKY-EIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 253 ~~~e~nGl~~~~-f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq-~l~~~~~~~~~v~Wsp 329 (1196)
++|+..+-+-+. .++. ....|..|.|-|+-+ .||+++.-. ...|.+||+.-. |+.. .+.-|.+..+.+.|..
T Consensus 245 kiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcsmv~-dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCSMVV-DTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred EEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhhccc-cceEEEEeeccc--cccceeeeccCccccceeccC
Confidence 999976533322 2222 235689999999876 466655322 237999998742 3322 3333333337788987
Q ss_pred CCCceEEEEecCCcEE
Q 000992 330 TKPLQLICWTLDGQIT 345 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~ 345 (1196)
.....|...+.||.+.
T Consensus 320 ~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTVL 335 (839)
T ss_pred CCceeeEeecCccHHH
Confidence 5554455555566543
No 172
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=3e-12 Score=144.72 Aligned_cols=209 Identities=15% Similarity=0.050 Sum_probs=150.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++-+|+|.+|+.++..|+|.+|.+.+|.+- +...|-..|+|+.||-||..+.++|.||-|.+|.... .+...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD-LVSAD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-ecccc
Confidence 368999999999999999889999999999998764 5667788999999999999999999999999985321 11100
Q ss_pred ecccccCccccccCccccCCCCeEEEEE--ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISW--RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isW--spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
.-+ ..++ .-.|..|.-.|+.+-- .|-..++. ++| .|+++|+||...|.++.+.. .+..+.+++..
T Consensus 160 ~~~---~~~p--~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS------~D~t~k~wdlS~g~LLlti~-fp~si~av~lD 226 (476)
T KOG0646|consen 160 NDH---SVKP--LHIFSDHTLSITDLQIGSGGTNARLY-TAS------EDRTIKLWDLSLGVLLLTIT-FPSSIKAVALD 226 (476)
T ss_pred cCC---Cccc--eeeeccCcceeEEEEecCCCccceEE-Eec------CCceEEEEEeccceeeEEEe-cCCcceeEEEc
Confidence 000 0011 1234556666665544 43334666 354 57999999998899887764 45567999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCe---eE----EEEE-----ec--cCCCC--cEEEEEEccCCCeeEEEEccCC
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGL---ER----SSFD-----IN--EQIDS--TVELLKWNCMSDLLAAVVRFEE 295 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl---~~----~~f~-----l~--~~~~~--~V~~laWSpDg~~LAs~~~d~~ 295 (1196)
|.+..+-.|+.++ .|-+...+++ +. +.+. ++ ..+.+ .|..|+.|-||++|++|+.|+
T Consensus 227 pae~~~yiGt~~G------~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg- 299 (476)
T KOG0646|consen 227 PAERVVYIGTEEG------KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG- 299 (476)
T ss_pred ccccEEEecCCcc------eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-
Confidence 9999999988764 3433322211 11 1111 11 12233 799999999999999999999
Q ss_pred cceEEEEEecC
Q 000992 296 YDSVKICFFSN 306 (1196)
Q Consensus 296 ~~~V~lW~~~n 306 (1196)
.|.+|+...
T Consensus 300 --~VcvWdi~S 308 (476)
T KOG0646|consen 300 --KVCVWDIYS 308 (476)
T ss_pred --CEEEEecch
Confidence 899999875
No 173
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.7e-12 Score=152.75 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=142.8
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000992 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG 97 (1196)
.+...+|.+|++.|++++. ..+|+.|++ ..++.+ . +..+ .+...+.+|+|||+.|+.+ +.+|
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl--~~g~~~-~-------l~~~----~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDL--ATGQRE-L-------VASF----RGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEEC--CCCCEE-E-------eccC----CCCccCceECCCCCEEEEEEeCCC
Confidence 5677899999999999874 346999998 444331 1 2111 1234578999999988754 5566
Q ss_pred --cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-Cce--EEEEeccCceeeeeecccccCccccccCccccC
Q 000992 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~t--V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
+|.+||..++.+..+..+.......+|||||+.|++++. ++. |.+++....... .+. +.+
T Consensus 271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt------------~~g- 335 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RLT------------FQG- 335 (433)
T ss_pred CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Eee------------cCC-
Confidence 599999998877655444444568899999999998875 344 433332111111 111 111
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.....++|||||+++| ..+.+ .+...|.+||..+|+......+ ....+.+|+|||++|+.++.+.. ...+
T Consensus 336 -~~~~~~~~SpDG~~Ia-~~~~~---~~~~~I~v~d~~~g~~~~Lt~~--~~~~~p~~spdG~~i~~~s~~~g---~~~L 405 (433)
T PRK04922 336 -NYNARASVSPDGKKIA-MVHGS---GGQYRIAVMDLSTGSVRTLTPG--SLDESPSFAPNGSMVLYATREGG---RGVL 405 (433)
T ss_pred -CCccCEEECCCCCEEE-EEECC---CCceeEEEEECCCCCeEECCCC--CCCCCceECCCCCEEEEEEecCC---ceEE
Confidence 1224689999999999 44322 1345799999977776643332 24567899999999988876532 4567
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 253 VFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
..++.+|..... +..+ .+.+...+|||
T Consensus 406 ~~~~~~g~~~~~--l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTDGRVRQR--LVSA-DGEVREPAWSP 432 (433)
T ss_pred EEEECCCCceEE--cccC-CCCCCCCccCC
Confidence 778887754332 3322 34577889997
No 174
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=6.7e-12 Score=134.49 Aligned_cols=118 Identities=15% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
+.|..++|+|+|+.||.+.+ ..++.|++||. .++...++. ......|.|||+|++||.++.+.. ...|.
T Consensus 60 ~~I~~~~WsP~g~~favi~g-----~~~~~v~lyd~-~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~ 128 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYG-----SMPAKVTLYDV-KGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL---NGDLE 128 (194)
T ss_pred CceEEEEECcCCCEEEEEEc-----cCCcccEEEcC-cccEeEeec--CCCceEEEECCCCCEEEEEEccCC---CcEEE
Confidence 35899999999999983333 13469999999 688777764 345688999999999999986432 46799
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC---CcceEEEEEecC
Q 000992 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE---EYDSVKICFFSN 306 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~---~~~~V~lW~~~n 306 (1196)
||+.+... .+.......+..++|||||++||++.... -...++||+...
T Consensus 129 ~wd~~~~~----~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRKKK----KISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCCCE----EeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 99976321 11111223578999999999999988641 122689998865
No 175
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2.3e-13 Score=159.74 Aligned_cols=216 Identities=14% Similarity=0.196 Sum_probs=165.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
.|..+..-..++.++.|+.|-.+-||....-- +-.+-.|+++|.++.|++++.+||.|+.+|+|++|+ ......+
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD----leeAk~v 105 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD----LEEAKIV 105 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeee----hhhhhhh
Confidence 45555555667888888888888788865311 112344699999999999999999999999998864 3344444
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
+++. +|-..+.++.|+|-|.|+| .++ .|+-+++||..---+.++..+|.+.+..+.|+|+|+
T Consensus 106 rtLt-----------gh~~~~~sv~f~P~~~~~a-~gS------tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 106 RTLT-----------GHLLNITSVDFHPYGEFFA-SGS------TDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR 167 (825)
T ss_pred hhhh-----------ccccCcceeeeccceEEec-ccc------ccccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence 4433 5666789999999999999 566 368899999865668888888999999999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 236 NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
++|+++.| ..|++|+. .|....+|. .+++.|.++.|.|-.-+||.|+.|+ +|++|++.+..
T Consensus 168 ~v~~g~ed------~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~---tv~f~dletfe------ 229 (825)
T KOG0267|consen 168 WVASGGED------NTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDR---TVRFWDLETFE------ 229 (825)
T ss_pred eeeccCCc------ceeeeecccccccccccc---cccccccccccCchhhhhccCCCCc---eeeeeccceeE------
Confidence 99999885 57999995 455544443 2467899999999999999999999 99999998642
Q ss_pred EEEec----CCcEEEEEccCCC
Q 000992 315 IRYLR----RDGIRFMWHPTKP 332 (1196)
Q Consensus 315 l~~~~----~~~~~v~Wsp~~~ 332 (1196)
+.... .++.+..|+|++.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred EeeccCCccCCceeeeecCCce
Confidence 22111 2237788999875
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=1.4e-11 Score=137.27 Aligned_cols=284 Identities=12% Similarity=0.115 Sum_probs=172.3
Q ss_pred ceeEEeeecCCC-EEEEEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQN-RLFFASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~-~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
.+..+.|-..+. .+.++..|+.|..|.++. ..+.+..+|. .-+.|..| ...|+.|.|+|+|+.||+|+++|+|
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~-y~s~Ls~H----~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVE-YLSSLSRH----TRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEE-EeecccCC----cceeEEEEEcCCcCeeeecCCCceE
Confidence 333333433333 788888899999999851 1111112222 11123333 4689999999999999999999999
Q ss_pred EEEECC--------C-----C---eE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCc
Q 000992 100 LLHSVD--------G-----N---AT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEG 161 (1196)
Q Consensus 100 ~lw~~~--------~-----~---~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~ 161 (1196)
.||-.. + . .+ ..++.|...|..++||||+..|++++.|+++++|+ ..|.... ..+
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~-----~~~-- 162 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA-----ILD-- 162 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe-----ecc--
Confidence 999875 3 1 11 25566788999999999999999999999998765 3343332 222
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC---------------------CCcEEEEecc
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD---------------------SGTLQASSEL 220 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~---------------------~G~l~~~~e~ 220 (1196)
+|...+.-++|-|-++|+++ -+. ||..++++.. +|...+.+
T Consensus 163 ---------dh~~yvqgvawDpl~qyv~s-~s~------dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf-- 224 (434)
T KOG1009|consen 163 ---------DHEHYVQGVAWDPLNQYVAS-KSS------DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF-- 224 (434)
T ss_pred ---------ccccccceeecchhhhhhhh-hcc------CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--
Confidence 45667789999999999994 443 3333333221 11111111
Q ss_pred CCC----ceeEEEEcCCCCeEEEEecCC--CC-CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-----------
Q 000992 221 KAF----MGAVLEWMPSGANIAAVYDRK--SE-NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC----------- 282 (1196)
Q Consensus 221 ~~~----~v~slawsPdG~~IAs~s~d~--~~-~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp----------- 282 (1196)
|+. .-.-++|+|||.++.+..+-- ++ ...++.-.|.+.-+.+--+.|+.+. ..+..+.++|
T Consensus 225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~-k~~lavr~~pVy~elrp~~~~ 303 (434)
T KOG1009|consen 225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK-KPALAVRFSPVYYELRPLSSE 303 (434)
T ss_pred ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC-cceEEEEeeeeEEEecccccc
Confidence 111 126789999999998765421 10 1123333455443333333333221 1234444443
Q ss_pred -------CCCeeEEEEccCCcceEEEEEecCCEE-EEEEEEEEecCCcEEEEEccCCCceEEEEecCCc
Q 000992 283 -------MSDLLAAVVRFEEYDSVKICFFSNNHW-YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 283 -------Dg~~LAs~~~d~~~~~V~lW~~~n~~w-ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
-+-+.|+++.+. |.+++++...- +....|.++ ..+.++|+++|.. |.+.+.||-
T Consensus 304 ~~~~~lpyrlvfaiAt~~s----vyvydtq~~~P~~~v~nihy~--~iTDiaws~dg~~-l~vSS~DGy 365 (434)
T KOG1009|consen 304 KFLFVLPYRLVFAIATKNS----VYVYDTQTLEPLAVVDNIHYS--AITDIAWSDDGSV-LLVSSTDGF 365 (434)
T ss_pred ccccccccceEEEEeecce----EEEeccccccceEEEeeeeee--eecceeecCCCcE-EEEeccCCc
Confidence 445788888886 99999886332 222344442 2377999999876 555566774
No 177
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=7e-12 Score=150.89 Aligned_cols=221 Identities=16% Similarity=0.138 Sum_probs=140.8
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG 97 (1196)
.+...+|.+|++.|++++.. ..|+.||+ .+++.. .+ ... .+.+.+.+|||||+.|+. .+.+|
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl--~~g~~~-~l-------~~~----~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDL--ATGRRR-VV-------ANF----KGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEEC--CCCCEE-Ee-------ecC----CCCccceEECCCCCEEEEEEccCC
Confidence 67788999999999988753 36999999 555431 11 111 134668899999999985 46677
Q ss_pred cEEEE--ECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLH--SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw--~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
...|| |..++....+..+.+.+...+|||||+.|+.++. ++...+|..+-+.-....+. |.+ .
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt------------~~g--~ 328 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT------------FTG--S 328 (427)
T ss_pred CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe------------cCC--C
Confidence 76665 5666666555444455677899999999998875 34555543221100000110 111 1
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.....+|||||+++|. .+.+ .+...|.+||..+|+....... +....++|+|||+.|+.++.+.+ ...+..
T Consensus 329 ~~~~~~~SpDG~~Ia~-~s~~---~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g---~~~l~~ 399 (427)
T PRK02889 329 YNTSPRISPDGKLLAY-ISRV---GGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGG---RSVLAA 399 (427)
T ss_pred CcCceEECCCCCEEEE-EEcc---CCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCC---CEEEEE
Confidence 2246899999999994 4322 1235799999977776544332 23468899999999999887543 334555
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
.+.+|.... .++.+ .+.+...+|||
T Consensus 400 ~~~~g~~~~--~l~~~-~g~~~~p~wsp 424 (427)
T PRK02889 400 VSSDGRIKQ--RLSVQ-GGDVREPSWGP 424 (427)
T ss_pred EECCCCceE--EeecC-CCCCCCCccCC
Confidence 566675433 23322 34577889998
No 178
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.8e-11 Score=145.98 Aligned_cols=203 Identities=13% Similarity=0.091 Sum_probs=130.7
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCc--eEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFG--QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~--tV~l~~~~~d~ 149 (1196)
..+.+..|||||+.|+..+.+ ..|.+|+.++++.+.+....+.+.+.+|||||+.||.. +.++ .|.+|+.....
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 468899999999999877643 36888999988776555445566789999999999865 3444 35554432211
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.. .+. .+.......+|+|||+.++ .++.. .+...|.+|+..+|+....... .......+
T Consensus 279 ~~--~lt--------------~~~~~~~~~~~spDg~~i~-f~s~~---~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~ 337 (430)
T PRK00178 279 LS--RVT--------------NHPAIDTEPFWGKDGRTLY-FTSDR---GGKPQIYKVNVNGGRAERVTFV-GNYNARPR 337 (430)
T ss_pred eE--Ecc--------------cCCCCcCCeEECCCCCEEE-EEECC---CCCceEEEEECCCCCEEEeecC-CCCccceE
Confidence 11 111 1112235689999999988 44421 1345788889877776544321 12235679
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
|||||+.|+..+...+ ...|.+++..+..... +... ......+|||||+.|+..+.+++...+.+++...
T Consensus 338 ~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~--lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 338 LSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRI--LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ECCCCCEEEEEEccCC---ceEEEEEECCCCCEEE--ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 9999999998876432 3467788865433222 2211 1223568999999999988765434566666643
No 179
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1e-11 Score=150.06 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=134.8
Q ss_pred CCEEEEEEccCCCEEEEEEC-CC--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCce--EEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTS-SG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~-dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~t--V~l~~~~~d~ 149 (1196)
..+.+..|||||+.|+.++. +| .|.+||+.+++...+....+...+.+|||||+.||.+ +.++. |.+|+.....
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 35778999999999998754 33 5888999887765444445556688999999999875 45565 4444322111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.. .+. .+.......+|+|||+++++ .+.. .+...|.++|..+|+...... ........+
T Consensus 298 ~~--~lt--------------~~~~~~~~p~wSpDG~~I~f-~s~~---~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~ 356 (448)
T PRK04792 298 LT--RIT--------------RHRAIDTEPSWHPDGKSLIF-TSER---GGKPQIYRVNLASGKVSRLTF-EGEQNLGGS 356 (448)
T ss_pred eE--ECc--------------cCCCCccceEECCCCCEEEE-EECC---CCCceEEEEECCCCCEEEEec-CCCCCcCee
Confidence 11 111 11123367899999999984 4321 134578888887777655431 112234579
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|+|||+.|+..+...+ ...|..++..+..... +... ....+.+|||||+.|+..+.++....+.+++... .+
T Consensus 357 ~SpDG~~l~~~~~~~g---~~~I~~~dl~~g~~~~--lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~ 428 (448)
T PRK04792 357 ITPDGRSMIMVNRTNG---KFNIARQDLETGAMQV--LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RF 428 (448)
T ss_pred ECCCCCEEEEEEecCC---ceEEEEEECCCCCeEE--ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-Cc
Confidence 9999999998876432 3456556654432221 2211 1223568999999999888765434566666543 22
Q ss_pred EEEEEEEEecCCcEEEEEcc
Q 000992 310 YLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1196)
++.+..+........|+|
T Consensus 429 --~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 429 --KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --eEECcCCCCCcCCCccCC
Confidence 223322212224567776
No 180
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.42 E-value=1.1e-11 Score=140.17 Aligned_cols=297 Identities=16% Similarity=0.129 Sum_probs=188.3
Q ss_pred EEEEECCCcEEEEECCCC--eEEEeee-ecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCceeeeeecccccCccccc
Q 000992 90 LIVGTSSGLLLLHSVDGN--ATEVVGR-VEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH 165 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~--~~e~vg~-~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs 165 (1196)
|-+++...+++|||.... .-+.+.+ -+.||.++.|+.... .+|+.++|..|.+|-+++. .-+++......+..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~-- 81 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDN-- 81 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CCccceeeccccch--
Confidence 445677778999998643 2222221 245799999998864 2344467888999987765 33333322220000
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
+ .-+.++++| .|++ +++ ..++|+|||....-++..+..|...|..+.++-.-.+||+++..
T Consensus 82 --~-----~Cv~~~s~S---~y~~-sgG------~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g-- 142 (673)
T KOG4378|consen 82 --A-----FCVACASQS---LYEI-SGG------QSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG-- 142 (673)
T ss_pred --H-----HHHhhhhcc---eeee-ccC------cCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccC--
Confidence 0 012344444 7887 454 35899999995444556678899999999999999999999874
Q ss_pred CCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeE-EEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-
Q 000992 246 ENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLA-AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG- 322 (1196)
Q Consensus 246 ~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA-s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~- 322 (1196)
.+|.+.. ..+++..+|... ....|.-|.+||-.+.|. +++.++ +|.|||+....-|... ...| ..+
T Consensus 143 ----Gdiiih~~~t~~~tt~f~~~--sgqsvRll~ys~skr~lL~~asd~G---~VtlwDv~g~sp~~~~-~~~H-sAP~ 211 (673)
T KOG4378|consen 143 ----GDIIIHGTKTKQKTTTFTID--SGQSVRLLRYSPSKRFLLSIASDKG---AVTLWDVQGMSPIFHA-SEAH-SAPC 211 (673)
T ss_pred ----CcEEEEecccCccccceecC--CCCeEEEeecccccceeeEeeccCC---eEEEEeccCCCcccch-hhhc-cCCc
Confidence 4677776 456666666543 234678999999998655 566666 9999999864321100 0111 122
Q ss_pred EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecC
Q 000992 323 IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSK 402 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspd 402 (1196)
..+.|+|-+...|+....|-.+..|+. +-. -+...+.-..+...|+|+++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~-------------------------~s~-----~s~~~l~y~~Plstvaf~~~ 261 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDI-------------------------RSQ-----ASTDRLTYSHPLSTVAFSEC 261 (673)
T ss_pred CcceecCCccceEEEecccceEEEeec-------------------------ccc-----cccceeeecCCcceeeecCC
Confidence 557889988775555544444443332 110 01122334456789999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEE
Q 000992 403 SSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLL 462 (1196)
Q Consensus 403 g~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~ll 462 (1196)
| .+|++|++.|.|..||+-....+ ..+. ..|...|..++|-+..++|
T Consensus 262 G--~~L~aG~s~G~~i~YD~R~~k~P-------v~v~----sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 262 G--TYLCAGNSKGELIAYDMRSTKAP-------VAVR----SAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred c--eEEEeecCCceEEEEecccCCCC-------ceEe----eecccceeEEEeeecceee
Confidence 9 89999999999999998642221 1111 1244579999999887544
No 181
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.42 E-value=4.3e-11 Score=128.16 Aligned_cols=228 Identities=17% Similarity=0.130 Sum_probs=153.4
Q ss_pred eecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeeeeecccccCccccc--cCc-cccCCCCeEEEEEcc-CCceE
Q 000992 114 RVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH--EPE-LSSSFSFKSPISWRG-DGKYF 188 (1196)
Q Consensus 114 ~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs--~tq-f~~~~~~v~~isWsp-DG~~l 188 (1196)
.|.++|+++..-|- |+++.+|+.||.|.+|+..--.-++... . ..+++. ..| -.+|.-.|.++-|-| |--+|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--l-i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--L-IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--c-eeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 35678888888774 8899999999999998632111011100 0 011111 000 014556788999998 44567
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC---CeEEEEecCCCCCCCCeEEEEeC-CCeeEEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG---ANIAAVYDRKSENKCPSIVFYER-NGLERSS 264 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG---~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~ 264 (1196)
. +++. |.++||||.++-+....+. .++.|.+-+|||=. -+||+|.++ ..|++++. .|--..
T Consensus 118 t-ssSF------DhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~------~~VrLCDi~SGs~sH- 182 (397)
T KOG4283|consen 118 T-SSSF------DHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRD------VQVRLCDIASGSFSH- 182 (397)
T ss_pred e-cccc------cceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCC------CcEEEEeccCCccee-
Confidence 6 5663 6999999998877766665 56778899999954 489999886 46999995 332211
Q ss_pred EEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCc
Q 000992 265 FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
+|.+ |.+.|.++.|||.++ +||+|+.|+ +|+|||+..- + + ++.+.....
T Consensus 183 -~LsG-Hr~~vlaV~Wsp~~e~vLatgsaDg---~irlWDiRra-------------s---------g--cf~~lD~hn- 232 (397)
T KOG4283|consen 183 -TLSG-HRDGVLAVEWSPSSEWVLATGSADG---AIRLWDIRRA-------------S---------G--CFRVLDQHN- 232 (397)
T ss_pred -eecc-ccCceEEEEeccCceeEEEecCCCc---eEEEEEeecc-------------c---------c--eeEEeeccc-
Confidence 3444 357899999999998 689999999 9999997631 0 0 122222110
Q ss_pred EEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
++ -||.---...|.+.|+.++|+.|| ..+++.+.|..+++|+..
T Consensus 233 ----------------------~k------------~~p~~~~n~ah~gkvngla~tSd~--~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 233 ----------------------TK------------RPPILKTNTAHYGKVNGLAWTSDA--RYLASCGTDDRIRVWNME 276 (397)
T ss_pred ----------------------Cc------------cCccccccccccceeeeeeecccc--hhhhhccCccceEEeecc
Confidence 00 011111123478899999999999 899999999999999987
Q ss_pred CC
Q 000992 424 AP 425 (1196)
Q Consensus 424 ~~ 425 (1196)
.+
T Consensus 277 ~G 278 (397)
T KOG4283|consen 277 SG 278 (397)
T ss_pred cC
Confidence 54
No 182
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3e-11 Score=130.47 Aligned_cols=248 Identities=11% Similarity=0.053 Sum_probs=161.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.-.++-|.+-|+.|.+++.++.+..||. .+... .++ +..|- -.|.+++||+||+.|.++|.|..|++
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~--~T~~i-ar~------lsaH~----~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDF--DTFRI-ARM------LSAHV----RPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEc--cccch-hhh------hhccc----cceeEEEecCCCCEeeeecCCceeEE
Confidence 3456779999999999999999999999 33332 122 33442 36999999999999999999999999
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC--C-ceEEEEeccCceeeeeeccccc---------------Cccc
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG--F-GQILVMTHDWDLLYENPLEELA---------------EGFD 163 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~--d-~tV~l~~~~~d~~~~~~l~~~~---------------~~~~ 163 (1196)
||+..|.+---=.++.+|+.+.|.|--...++++- . -+|...+ ++... .+..++ .++.
T Consensus 92 wDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s---~~~h~-~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS---DPKHS-VLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred EeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEec---CCcee-eccCCCccccccccccccccCCCCE
Confidence 99976654311235788999999987666666542 1 1222111 12211 111111 1122
Q ss_pred c-c------------cCc-----cccC-CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE----Eecc
Q 000992 164 V-H------------EPE-----LSSS-FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA----SSEL 220 (1196)
Q Consensus 164 V-s------------~tq-----f~~~-~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~----~~e~ 220 (1196)
| + +|+ |+-. ...|-+|-++-.|++|+ +.+ .||+||+|+..+ -... ..++
T Consensus 168 IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~li-iNt------sDRvIR~ye~~d-i~~~~r~~e~e~ 239 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLI-INT------SDRVIRTYEISD-IDDEGRDGEVEP 239 (405)
T ss_pred EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEE-Eec------CCceEEEEehhh-hcccCccCCcCh
Confidence 1 0 110 1111 14567889999999999 775 579999998731 1111 0010
Q ss_pred ---CCCce-----eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEE
Q 000992 221 ---KAFMG-----AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 221 ---~~~~v-----~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
....| .++.||-+|.+|..++.. .+.+-+||++ |.... .|.+.......++.|.|-..++|+-.
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE~~~GsLVK--ILhG~kgE~l~DV~whp~rp~i~si~ 312 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWEKSIGSLVK--ILHGTKGEELLDVNWHPVRPIIASIA 312 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEecCCcceee--eecCCchhheeecccccceeeeeecc
Confidence 00111 578899999999888754 4789999986 43333 34444334577899999999999985
Q ss_pred ccCCcceEEEEEec
Q 000992 292 RFEEYDSVKICFFS 305 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~ 305 (1196)
++ +|.+|...
T Consensus 313 sg----~v~iw~~~ 322 (405)
T KOG1273|consen 313 SG----VVYIWAVV 322 (405)
T ss_pred CC----ceEEEEee
Confidence 44 69999965
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.41 E-value=3.6e-12 Score=145.08 Aligned_cols=260 Identities=17% Similarity=0.190 Sum_probs=167.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEE-CCCCeEEEeeeecCcEEEEEE--------CCCCCEEEEEeCCceEEEEeccC
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHS-VDGNATEVVGRVEGGVRFISP--------SPDGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~-~~~~~~e~vg~~~~~I~~~aw--------SPDg~~LA~~s~d~tV~l~~~~~ 147 (1196)
.|.++.|+...+.+-+ ++|..+.+|+ ..+...++.--.++-|...-+ --..+.++++|.||.+.+.++..
T Consensus 16 ~vc~v~w~~~eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~ 94 (737)
T KOG1524|consen 16 KVCCVDWSSNEEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSA 94 (737)
T ss_pred eEEeecccccceEEEe-ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccc
Confidence 5678899988776655 4555666654 433221111000110100000 11235799999999999988876
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
.+-..+. +|...+.+-.|+|||.=|.| ++ +|+.||||++ +|-+.++.......+.+
T Consensus 95 rVE~sv~----------------AH~~A~~~gRW~~dGtgLlt-~G------EDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 95 RVERSIS----------------AHAAAISSGRWSPDGAGLLT-AG------EDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred hhhhhhh----------------hhhhhhhhcccCCCCceeee-ec------CCceEEEEec-cchHHHHHhhcCceeEE
Confidence 6543332 34456788899999999984 44 5899999999 99999988777778999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
++|-|+.+-|.-++.+. ..|+=...|-.. ...+ .|++-|.++.|||.+.++|+|++|- ..++||....
T Consensus 151 ~~W~p~S~~vl~c~g~h-----~~IKpL~~n~k~---i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~---kfKvWD~~G~ 218 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGH-----ISIKPLAANSKI---IRWR-AHDGLVLSLSWSTQSNIIASGGEDF---RFKIWDAQGA 218 (737)
T ss_pred EEECCCCCceEEecCCe-----EEEeecccccce---eEEe-ccCcEEEEeecCccccceeecCCce---eEEeecccCc
Confidence 99999999888876642 223222223211 1112 2457799999999999999999998 8999997642
Q ss_pred EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
.-|-. ..+....++++|.||.. ..+|+- ++++ |.. |
T Consensus 219 ~Lf~S---~~~ey~ITSva~npd~~--~~v~S~--------------------------nt~R---~~~-----p----- 254 (737)
T KOG1524|consen 219 NLFTS---AAEEYAITSVAFNPEKD--YLLWSY--------------------------NTAR---FSS-----P----- 254 (737)
T ss_pred ccccC---Chhccceeeeeeccccc--eeeeee--------------------------eeee---ecC-----C-----
Confidence 21110 01111238999999943 344431 0111 111 1
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 388 LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 388 l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
-.+.|..++||||| ..+|.+++.|.+.+--
T Consensus 255 --~~GSifnlsWS~DG--TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 255 --RVGSIFNLSWSADG--TQATCGTSTGQLIVAY 284 (737)
T ss_pred --CccceEEEEEcCCC--ceeeccccCceEEEee
Confidence 13578899999999 8999999999776543
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.41 E-value=2e-12 Score=148.96 Aligned_cols=244 Identities=15% Similarity=0.168 Sum_probs=156.4
Q ss_pred ccCCCEEEE--EECCCcEEEEECCC-CeEE--E-eeee-cCcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 84 LMEKEALIV--GTSSGLLLLHSVDG-NATE--V-VGRV-EGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 84 spd~~~La~--as~dG~I~lw~~~~-~~~e--~-vg~~-~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
..+.+..|+ ++..|.|-|++++. |++. . -|-+ ...|+.+.|.| |.+.||+++.||.|.+|-..-+-+.+...
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 444555553 56689999999863 3332 1 1111 23599999999 78999999999999998533222222221
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
.+ ++....|.+.|+++.|.|=.. .|| +++ .|-+|++||..++++...+.+|.+.|.++||||||
T Consensus 668 tP--------e~~lt~h~eKI~slRfHPLAadvLa-~as------yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG 732 (1012)
T KOG1445|consen 668 TP--------EKILTIHGEKITSLRFHPLAADVLA-VAS------YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG 732 (1012)
T ss_pred Cc--------ceeeecccceEEEEEecchhhhHhh-hhh------ccceeeeeehhhhhhhheeccCcCceeEEEECCCC
Confidence 11 223336778899999999543 566 565 36899999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCE--EEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNH--WYL 311 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~--wyl 311 (1196)
++||+.+.|+ +|++++........+.-+++...+--.|-|-.||.++.+.+-|.. ...|++|+..... -.-
T Consensus 733 r~~AtVcKDg------~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~ 806 (1012)
T KOG1445|consen 733 RRIATVCKDG------TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY 806 (1012)
T ss_pred cceeeeecCc------eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcce
Confidence 9999999864 699998431111101111222233446899999999999887763 2268888866421 011
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEE
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF 349 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~ 349 (1196)
.+.+...+ +...-.+++|....+..+.+|..+.+|..
T Consensus 807 t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 807 TQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred eeeecccC-ccccccccCCCceEEEecCCCceEEEEEe
Confidence 22332211 22334567777654444443444444433
No 185
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.1e-12 Score=159.32 Aligned_cols=251 Identities=12% Similarity=0.086 Sum_probs=176.8
Q ss_pred ceeEEeeecCCCE----EEEEeCCCcEEEEecccccccccce-eeccccccccccCCCCCCEEEEEEccCCC-EEEEEEC
Q 000992 22 ILQFSALDIEQNR----LFFASSANNIYSAQLSSFQNERASI-KTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTS 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~----l~~~s~~~~i~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~ 95 (1196)
....++|-.-++. |.-+.+|++|..|+.....+..... +.+ ...| .+.|.++.|.|.+. .||+|..
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~----~~~h----~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT----KSKH----TGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh----hccc----CCceeeeeccccCCceeeccCC
Confidence 6788888877665 6777889999999995321111111 111 1112 47899999999887 9999999
Q ss_pred CCcEEEEECCCCeEE-Eeee--ecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccc
Q 000992 96 SGLLLLHSVDGNATE-VVGR--VEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELS 170 (1196)
Q Consensus 96 dG~I~lw~~~~~~~e-~vg~--~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~ 170 (1196)
||+|.|||+..-... ..|. ..+.|.+++|+-. ...||+++.+|.+.+|+.. -.++.....+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~------------- 204 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP------------- 204 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-------------
Confidence 999999999752222 2322 3467999999875 6689999999999887622 12222222111
Q ss_pred cCCCCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCC-CeEEEEecCCCCC
Q 000992 171 SSFSFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSEN 247 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG-~~IAs~s~d~~~~ 247 (1196)
....+..|+|.||+.. ++ +++-| +..-.|++||.+ .-..++++++|...+-+++|+|.+ .+++|++.|
T Consensus 205 -~~~~~S~l~WhP~~aTql~-~As~d---d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD---- 275 (1049)
T KOG0307|consen 205 -GRMHCSVLAWHPDHATQLL-VASGD---DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD---- 275 (1049)
T ss_pred -CccceeeeeeCCCCceeee-eecCC---CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC----
Confidence 1123578999999974 34 45533 345689999943 445667778899999999999998 778888775
Q ss_pred CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEE
Q 000992 248 KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 248 ~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
++|..|+.| |...++| +. ..++++.+.|+|--- ++|+++-|+ .|.|+.+.+..|+
T Consensus 276 --~~ii~wN~~tgEvl~~~--p~-~~nW~fdv~w~pr~P~~~A~asfdg---kI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 276 --NRIICWNPNTGEVLGEL--PA-QGNWCFDVQWCPRNPSVMAAASFDG---KISIYSLQGTDTD 332 (1049)
T ss_pred --CCeeEecCCCceEeeec--CC-CCcceeeeeecCCCcchhhhheecc---ceeeeeeecCCcc
Confidence 468899976 4444433 32 347899999999665 999999999 8999988775543
No 186
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=5.3e-11 Score=142.71 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=131.2
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCc--eEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFG--QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~--tV~l~~~~~d~ 149 (1196)
..+.+..|+|||+.|+.++.. .+|.+|+..+++...+..+.+.+.+++|||||+.|+... .++ .|.+|+.....
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 458889999999999987754 479999999886665555566778899999999888654 344 45555432111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.. .+. .+.......+|+|||++|++ .+.. .+...|.+||..+|+...... .......++
T Consensus 270 ~~--~l~--------------~~~~~~~~~~~s~dg~~l~~-~s~~---~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~ 328 (417)
T TIGR02800 270 LT--RLT--------------NGPGIDTEPSWSPDGKSIAF-TSDR---GGSPQIYMMDADGGEVRRLTF-RGGYNASPS 328 (417)
T ss_pred EE--ECC--------------CCCCCCCCEEECCCCCEEEE-EECC---CCCceEEEEECCCCCEEEeec-CCCCccCeE
Confidence 11 111 11122346799999999883 4322 133578889986676554432 334457889
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
|+|+|++|+.+..+.+ ...|.+|+.++.... .+.. .......+|||||+.|+..+.++....+.+.+.
T Consensus 329 ~spdg~~i~~~~~~~~---~~~i~~~d~~~~~~~--~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 329 WSPDGDLIAFVHREGG---GFNIAVMDLDGGGER--VLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ECCCCCEEEEEEccCC---ceEEEEEeCCCCCeE--EccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 9999999999887532 456888886553222 1221 123456799999999999888763333444443
No 187
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=4.3e-11 Score=128.86 Aligned_cols=257 Identities=12% Similarity=0.117 Sum_probs=170.2
Q ss_pred cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
+|.++|+.++=-.--..++ .++ .|.+-+||..++|.++.+..+|.|.+++|.|+|+|.++++++.|.+
T Consensus 146 GHkDGiW~Vaa~~tqpi~g-tAS------ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t----- 213 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICG-TAS------ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET----- 213 (481)
T ss_pred ccccceeeehhhcCCccee-ecc------cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc-----
Confidence 7888999988655444555 344 4689999999999999999999999999999999999999998743
Q ss_pred eEEEEe-------------------------------C------CCeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEE
Q 000992 251 SIVFYE-------------------------------R------NGLERSS--FDINEQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 251 ~V~~~e-------------------------------~------nGl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
-.+|. + +|..... ..|. .+.+.|....|=.-|+.+.+++
T Consensus 214 -aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 214 -AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred -hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhcCcceeeeee
Confidence 22221 0 0100000 0111 2345688889999999999999
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEe---ee--------------
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWT---TA-------------- 354 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~---~~-------------- 354 (1196)
.|+ +--|||+.... +.+.+..|..+-+.+.=||...+ +...+.|-++..++|.-. ++
T Consensus 292 WDR---TAnlwDVEtge--~v~~LtGHd~ELtHcstHptQrL-VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 292 WDR---TANLWDVETGE--VVNILTGHDSELTHCSTHPTQRL-VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred ccc---cceeeeeccCc--eeccccCcchhccccccCCcceE-EEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence 999 99999998764 23444443322244444554322 122222333332332100 00
Q ss_pred cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCC
Q 000992 355 VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGT 434 (1196)
Q Consensus 355 ~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~ 434 (1196)
.-|..+|...|+.++++|+++ |+-.|+. ++..+++++-|+.|..+ .++|.--.+..|+|||+++.... .++..
T Consensus 366 ~~dd~vVSgSDDrTvKvWdLr--NMRsplA--TIRtdS~~NRvavs~g~--~iIAiPhDNRqvRlfDlnG~Rla-RlPrt 438 (481)
T KOG0300|consen 366 NTDDRVVSGSDDRTVKVWDLR--NMRSPLA--TIRTDSPANRVAVSKGH--PIIAIPHDNRQVRLFDLNGNRLA-RLPRT 438 (481)
T ss_pred ecCCceeecCCCceEEEeeec--cccCcce--eeecCCccceeEeecCC--ceEEeccCCceEEEEecCCCccc-cCCcc
Confidence 124567777899999999997 5556664 57789999999999988 79999988889999999863211 22211
Q ss_pred ceeeeeecccccCCcEEEEEEecCCeE
Q 000992 435 EFVVEACISETAFGSVIHLIWLGSHLL 461 (1196)
Q Consensus 435 ~~~~~~~~~~~~~~~v~~l~~~~d~~l 461 (1196)
...+|..-|.+.+|+.+.-.
T Consensus 439 -------sRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 439 -------SRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred -------cccccceeeeeeeccccCcc
Confidence 11233345778888877643
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1e-09 Score=132.92 Aligned_cols=334 Identities=13% Similarity=0.104 Sum_probs=203.0
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccc-cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
..+++...+...+++-..+ ++.|... .+. +.. ...+ -..|.+ .++.+++||.++.+|+|-.||.|.+|
T Consensus 164 ~~I~~~~~ge~~~i~~~~~-~~~~~v~--~~~--~~~--~~~~~~~~Htf----~~t~~~~spn~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCK-IHIYFVP--KHT--KHT--SSRDITVHHTF----NITCVALSPNERYLAAGDSDGRILVW 232 (792)
T ss_pred ccEEEcCCceEEEEEEeee-EEEEEec--ccc--eee--ccchhhhhhcc----cceeEEeccccceEEEeccCCcEEEE
Confidence 3345555555555555444 7777763 211 111 1111 122433 37899999999999999999999999
Q ss_pred ECCC--C---eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 103 SVDG--N---ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 103 ~~~~--~---~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.--+ + .+.+.-=|.+.|.+++||+||.+|.+|+.++.+.+|...-.. .+-+.. -...+.
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPR--------------Lgs~I~ 296 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPR--------------LGSPIL 296 (792)
T ss_pred eccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccc--------------cCCeeE
Confidence 8654 1 234555577899999999999999999999999998643111 111111 124678
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe---ccC--------CCceeEEEEcCCCCeEEEEecCCCC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELK--------AFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~---e~~--------~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
.+.|||||.+.+ +.. +|..|.+-...+-+...+- ++. .++...+++.|.-+.++-.+.
T Consensus 297 ~i~vS~ds~~~s-l~~------~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~---- 365 (792)
T KOG1963|consen 297 HIVVSPDSDLYS-LVL------EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH---- 365 (792)
T ss_pred EEEEcCCCCeEE-EEe------cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC----
Confidence 999999999998 553 5788888877444443332 222 456688899996555555444
Q ss_pred CCCCeEEEEeCCC-eeEEEEEec--cCC------CCcEEEEEEccCCCeeEEEEccCC-------cceEEEEEec--CCE
Q 000992 247 NKCPSIVFYERNG-LERSSFDIN--EQI------DSTVELLKWNCMSDLLAAVVRFEE-------YDSVKICFFS--NNH 308 (1196)
Q Consensus 247 ~~~~~V~~~e~nG-l~~~~f~l~--~~~------~~~V~~laWSpDg~~LAs~~~d~~-------~~~V~lW~~~--n~~ 308 (1196)
...|.||+.-- ....++..- ... ...+.+++.+.+|..+|+.-...+ ...+|+|..+ .-.
T Consensus 366 --~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt 443 (792)
T KOG1963|consen 366 --PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT 443 (792)
T ss_pred --CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence 35799998421 111222211 111 134788999999999998764321 2378999875 245
Q ss_pred EEEEEEEEEecCCc-E-EEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc-cCCCCCc--
Q 000992 309 WYLKYEIRYLRRDG-I-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-SLMPPPM-- 383 (1196)
Q Consensus 309 wylkq~l~~~~~~~-~-~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~-~~vpppm-- 383 (1196)
|.|.-.+.-+++.. . .+..+|....+......+|.+ ++|-|.. .++-|.-
T Consensus 444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~-------------------------KiW~~~~~~n~~k~~s~ 498 (792)
T KOG1963|consen 444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF-------------------------KIWVFTDDSNIYKKSSN 498 (792)
T ss_pred eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeE-------------------------EEEEEecccccCcCccc
Confidence 66776666554433 2 233333332123333334444 3333310 0110100
Q ss_pred -eeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 384 -YLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 384 -~~~~l--~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+...+ -|..++.+.+||.|| ..||++ .|++|.+|+..+.
T Consensus 499 W~c~~i~sy~k~~i~a~~fs~dG--slla~s-~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 499 WTCKAIGSYHKTPITALCFSQDG--SLLAVS-FDDTITIWDYDTK 540 (792)
T ss_pred eEEeeeeccccCcccchhhcCCC--cEEEEe-cCCEEEEecCCCh
Confidence 11111 256788999999999 666666 7789999999874
No 189
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=6.2e-11 Score=130.24 Aligned_cols=201 Identities=12% Similarity=0.145 Sum_probs=137.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
-.+..++|++--..+|++..|-.|++|+........+.+ ....|.|++|-|-+..-.+++--+-|-+|+.+........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 468899999988888999999999999987743333332 2467999999998765444444456889975433222221
Q ss_pred ccccc-CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 155 LEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 155 l~~~~-~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
..... +-..| .+..+| ..|.++.|.+||..++ .++. +++.|+|||+++|..+..-....|.+.-+-||||
T Consensus 179 ~~~~s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l~-tAS~-----gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 179 IRMMSTHHLQV--LQDPGH-NPVTSMQWNEDGTILV-TASF-----GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred cccccccchhh--eeCCCC-ceeeEEEEcCCCCEEe-eccc-----CcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 11000 00001 112233 6789999999999999 5664 5789999999999877654334456688999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEE-EEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLERSS-FDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~-f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
|..|-.++.|. .-++|..|-.-..+ +.+ ..+.|..-+|||+|..|..++...
T Consensus 250 gd~lfaAt~da------vfrlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 250 GDVLFAATCDA------VFRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred CCEEEEecccc------eeeeehhcccceecceec---cCCceeeeeecCCCCEEEEEEcCC
Confidence 99998887764 58889443222211 111 235899999999999888877654
No 190
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.35 E-value=2.6e-11 Score=133.85 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=133.5
Q ss_pred CCEEEEEEccC--CCEEEEEECCCcEEEEECCC-----------------CeEEEeeeecCcEEEEEECCCCC-EEEEEe
Q 000992 76 DSITAFDYLME--KEALIVGTSSGLLLLHSVDG-----------------NATEVVGRVEGGVRFISPSPDGD-LLGVTT 135 (1196)
Q Consensus 76 ~~v~~v~~spd--~~~La~as~dG~I~lw~~~~-----------------~~~e~vg~~~~~I~~~awSPDg~-~LA~~s 135 (1196)
+.++-+.-++- .-..|+=++.|.|.+|+... ..+-.++.|.+.=.++.|||--. .|++|.
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence 44555444444 44556668999999999742 12234555677778999999311 244554
Q ss_pred CCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCC--
Q 000992 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSG-- 212 (1196)
Q Consensus 136 ~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G-- 212 (1196)
.-+.|.+|. +..+ .+.. ...-|.+|...|-.+.|||.-. .|| ++|. |++|||||.+.|
T Consensus 232 c~~~I~lw~----~~~g-~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfa-ScS~------DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 232 CVKGIHLWE----PSTG-SWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFA-SCSC------DGSIRIWDIRSGPK 292 (440)
T ss_pred cccceEeee----eccC-ceee-------cCccccccccchhhhccCCccCceEE-eeec------CceEEEEEecCCCc
Confidence 455676653 3221 1111 1233557888899999999654 667 4543 689999999888
Q ss_pred -cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE----EEEeccCCCCcEEEEEEccC-CCe
Q 000992 213 -TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS----SFDINEQIDSTVELLKWNCM-SDL 286 (1196)
Q Consensus 213 -~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~----~f~l~~~~~~~V~~laWSpD-g~~ 286 (1196)
.++.+ ..|.+-|+.|+|+-.-.+||||++++ ++.+|+..-...+ +|+. |...|.+|.|+|. ..+
T Consensus 293 ~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdG------t~~iwDLR~~~~~~pVA~fk~---Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 293 KAAVST-KAHNSDVNVISWNRREPLLASGGDDG------TLSIWDLRQFKSGQPVATFKY---HKAPITSIEWHPHEDSV 362 (440)
T ss_pred cceeEe-eccCCceeeEEccCCcceeeecCCCc------eEEEEEhhhccCCCcceeEEe---ccCCeeEEEeccccCce
Confidence 44444 67889999999999988999999864 6999994322222 3432 3567999999984 446
Q ss_pred eEEEEccCCcceEEEEEec
Q 000992 287 LAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 287 LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|+++.|. +|.|||+.
T Consensus 363 iaasg~D~---QitiWDls 378 (440)
T KOG0302|consen 363 IAASGEDN---QITIWDLS 378 (440)
T ss_pred EEeccCCC---cEEEEEee
Confidence 66666666 79999986
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=4.2e-10 Score=124.60 Aligned_cols=238 Identities=15% Similarity=0.121 Sum_probs=163.7
Q ss_pred ceeEEeeecCCCEEEEEeCCC-cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--
Q 000992 22 ILQFSALDIEQNRLFFASSAN-NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL-- 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~-- 98 (1196)
.+..+.|+-|.-.|..++.++ .++.-+. +.+-. +...++-.|+-+-||. ..+|+++.+..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~--~~k~~-------------~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~ 69 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGYKIFSCSP--FEKCF-------------SKDTEGVSIVEMLFSS--SLVAIVSIKQPRK 69 (391)
T ss_pred ceeeeeeccceeEEEccCCCceeEEecCc--hHHhh-------------cccCCCeEEEEeeccc--ceeEEEecCCCce
Confidence 667777888888888888887 3433333 22211 1112234677777775 45666665443
Q ss_pred EEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 99 LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.++++..-+.+-+-=.....|.++.++-+ .|++.=.+. |.+.+ ++-.+ +|+.+ ...++..++.
T Consensus 70 Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~Mkl-----LhTI~--------t~~~n~~gl~ 133 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKL-----LHTIE--------TTPPNPKGLC 133 (391)
T ss_pred EEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEccc-EEEEeccccee-----ehhhh--------ccCCCccceE
Confidence 77888764332222234678999999876 455454443 77765 22222 33222 0012335678
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE- 256 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e- 256 (1196)
.++.++++.|+| .-+- ...+.|.|||..+-+...+.+.|.+.+.+++|+|+|.+||++|.+++ .|++|.
T Consensus 134 AlS~n~~n~ylA-yp~s----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT-----VIRVf~v 203 (391)
T KOG2110|consen 134 ALSPNNANCYLA-YPGS----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT-----VIRVFSV 203 (391)
T ss_pred eeccCCCCceEE-ecCC----CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCce-----EEEEEEc
Confidence 888889999999 3321 24578999999888888889999999999999999999999999754 677777
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.+|.+..||. ++.-...|.+|+||||+++|++.+..+ ||.++.++.
T Consensus 204 ~~G~kl~eFR-RG~~~~~IySL~Fs~ds~~L~~sS~Te---TVHiFKL~~ 249 (391)
T KOG2110|consen 204 PEGQKLYEFR-RGTYPVSIYSLSFSPDSQFLAASSNTE---TVHIFKLEK 249 (391)
T ss_pred CCccEeeeee-CCceeeEEEEEEECCCCCeEEEecCCC---eEEEEEecc
Confidence 6888877764 222235799999999999999999998 999998764
No 192
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.33 E-value=1.6e-10 Score=125.49 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=179.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccc--cccc--ccceeeccccccccccCCCCCCEEEEEEc-------cCCCEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSS--FQNE--RASIKTAISAEIEHIDLEPGDSITAFDYL-------MEKEAL 90 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~v~~v~~s-------pd~~~L 90 (1196)
-.-++-|.|||..|.+-++|+.+-.|++.. ..++ ...... .. .+.-...++.|.+-.|- |+....
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~---~~-~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS---KH-LSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccc---cc-eeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 355677999999999999999899999851 1111 000000 00 00112225678887775 788899
Q ss_pred EEEECCCcEEEEECCCCeEEE----eeeec--CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCcccc
Q 000992 91 IVGTSSGLLLLHSVDGNATEV----VGRVE--GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~~~~e~----vg~~~--~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~V 164 (1196)
|+.+.+.-|+|||.-+|++.. ..+.+ .+-.+++|||||+.|..| -..+|++++.. . +....+ +
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~----R--pGr~c~----v 195 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTS----R--PGRDCP----V 195 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeecc----C--CCCCCc----c
Confidence 999999999999999887642 11111 134689999999999754 55689876421 0 000000 0
Q ss_pred ccCccc---cCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEE
Q 000992 165 HEPELS---SSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 165 s~tqf~---~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
-.|.++ +..+-+.+++|+|- .+.+| +++. .+++-||+-..+..+..+-+|.|-|+.+.|.|+|+.+-||
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a-~gsY------~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLA-VGSY------GQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCccee-eecc------cceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 001111 23456789999995 45889 8875 3678888876778888888999999999999999999999
Q ss_pred ecCCCCCCCCeEEEEeCCCeeEEEEEeccCC--CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC-EEEEEEEEEE
Q 000992 241 YDRKSENKCPSIVFYERNGLERSSFDINEQI--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRY 317 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~--~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l~~ 317 (1196)
.+. ...|-.|+..--+.-.+.|..+- ++.=.-...-|+|++||+|+.|+ .|++|+++.+ .|. ..+
T Consensus 269 aRk-----~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG---~V~vwdlk~~gn~~----sv~ 336 (406)
T KOG2919|consen 269 ARK-----DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG---SVRVWDLKDLGNEV----SVT 336 (406)
T ss_pred ccC-----CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc---cEEEEecCCCCCcc----ccc
Confidence 986 45788898421111111222111 22222344469999999999999 9999999863 221 111
Q ss_pred ec-CC-cEEEEEccCCCc
Q 000992 318 LR-RD-GIRFMWHPTKPL 333 (1196)
Q Consensus 318 ~~-~~-~~~v~Wsp~~~~ 333 (1196)
.. .. ...|+.+|--|.
T Consensus 337 ~~~sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMPI 354 (406)
T ss_pred ccccccccceecCcccce
Confidence 11 12 256888887553
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.33 E-value=3.9e-11 Score=128.31 Aligned_cols=293 Identities=16% Similarity=0.178 Sum_probs=171.1
Q ss_pred CCCcEEEEECC--CCeE--EEeeeecCcEEEEEECCC-CCEEEEEeC---Cc----eEEEEeccCceeeeeecccccCcc
Q 000992 95 SSGLLLLHSVD--GNAT--EVVGRVEGGVRFISPSPD-GDLLGVTTG---FG----QILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 95 ~dG~I~lw~~~--~~~~--e~vg~~~~~I~~~awSPD-g~~LA~~s~---d~----tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
.+..|.+...+ ++.+ +.+-++.+.|+.++=||- ..+||++.. |. .+-+|+.- ++.......+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip-e~~~~S~~~tlE--- 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP-EPLGQSNSSTLE--- 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc-cccCccccchhh---
Confidence 34556554443 3333 355677888999999995 556777754 22 23344311 111110000000
Q ss_pred ccc--cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE-EEEe-----ccCCCceeEEEEcC--
Q 000992 163 DVH--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASS-----ELKAFMGAVLEWMP-- 232 (1196)
Q Consensus 163 ~Vs--~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~-----e~~~~~v~slawsP-- 232 (1196)
.|. +| .+-+.+.+|-|-|++.-+|+ - .+..|.+|+++++.. .... ..+...-.+-+|||
T Consensus 114 ~v~~Ldt---eavg~i~cvew~Pns~klas-m-------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 114 CVASLDT---EAVGKINCVEWEPNSDKLAS-M-------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred HhhcCCH---HHhCceeeEEEcCCCCeeEE-e-------ccCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 000 00 11247899999999999993 2 257899999987755 2211 11233347789999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
||+.+|++++ .++.+|+.. ..+..+.++..+...|.++.|||+-+ +||+++.|+ .|+|||+.+-.. -
T Consensus 183 dgnqv~tt~d-------~tl~~~D~R-T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg---yvriWD~R~tk~-p 250 (370)
T KOG1007|consen 183 DGNQVATTSD-------STLQFWDLR-TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG---YVRIWDTRKTKF-P 250 (370)
T ss_pred ccceEEEeCC-------CcEEEEEcc-chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCc---cEEEEeccCCCc-c
Confidence 8999999886 469999953 12222334433345699999999988 688888888 899999987542 2
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcC-------CEEEEeeccccCCCCCce
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG-------SKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg-------~~l~lt~l~~~~vpppm~ 384 (1196)
.+++..|..-.+.|.|+|.-.+.+..+..|-.+. ....-++. +...+.+--|- ..=+.-|+....
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~-Lsca~svS-SE~qi~~~~dese~e~~dseer~kpL~dg~------ 322 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN-LSCASSVS-SEQQIEFEDDESESEDEDSEERVKPLQDGQ------ 322 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeE-EEeccccc-cccccccccccccCcchhhHHhcccccccc------
Confidence 2455444444588999999887544444443332 11111111 11111110010 011111222111
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
..++ +|.+.|.+++||.-.+ =++|+++.||.+.|=+++
T Consensus 323 l~tydehEDSVY~~aWSsadP-WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 323 LETYDEHEDSVYALAWSSADP-WIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccceEEEeeccCCC-eeEEEeccCceEEeecCC
Confidence 1334 5899999999998763 578999999999887765
No 194
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.1e-10 Score=137.75 Aligned_cols=210 Identities=10% Similarity=0.052 Sum_probs=120.1
Q ss_pred CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEE--EeC-Cc--eEEEEeccCceeeeeecccccCccccccCcccc
Q 000992 97 GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGV--TTG-FG--QILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~--~s~-d~--tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
+.|.+.|.+++....+......+.+-+|||||+.++. .+. ++ .|.+++.... ....+. .|.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g--~~~~lt-----------~~~- 230 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP--AGKKIL-----------ALQ- 230 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC--CceEee-----------cCC-
Confidence 3677788887655433333455788999999987443 443 33 3444332211 111111 111
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC---CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS---GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~---G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~ 248 (1196)
......+|||||+.||.++...+ ..+-.+.+|+... |+.........+.....+|||||+.||..+...+
T Consensus 231 --g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g--- 303 (428)
T PRK01029 231 --GNQLMPTFSPRKKLLAFISDRYG--NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG--- 303 (428)
T ss_pred --CCccceEECCCCCEEEEEECCCC--CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC---
Confidence 22356899999999995443211 1233455577644 3444444433344567899999999998875321
Q ss_pred CCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEE
Q 000992 249 CPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 249 ~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~ 326 (1196)
...|..++.++ .... .+.. ....+...+|||||+.||....+.+...|.+|+..+... ..+...........
T Consensus 304 ~~~ly~~~~~~~g~~~~--~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~ 377 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPR--LLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPS 377 (428)
T ss_pred CceEEEEECcccccceE--Eecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceE
Confidence 23444444432 1111 1221 123567899999999999887654334699999877643 22221111225688
Q ss_pred EccCCCc
Q 000992 327 WHPTKPL 333 (1196)
Q Consensus 327 Wsp~~~~ 333 (1196)
|+|++..
T Consensus 378 wSpDG~~ 384 (428)
T PRK01029 378 WAIDSLH 384 (428)
T ss_pred ECCCCCE
Confidence 9999875
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.8e-11 Score=137.47 Aligned_cols=197 Identities=16% Similarity=0.101 Sum_probs=131.4
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEE-CCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc
Q 000992 79 TAFDYLMEKEALIVGTSSGLLLLHS-VDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 79 ~~v~~spd~~~La~as~dG~I~lw~-~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
..|+|++||..|++++.||++++|+ ++-..+...-.|.+.|.++.|||||+.||+.|.| ...+|+.. .+..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~----~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN----TGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec----cCchhhh
Confidence 7799999999999999999999999 4433332333457889999999999999999999 78887632 2222221
Q ss_pred cc-CccccccCccccCCCCeEEEEEccCC---c-eEEEeeccccc-cCCCCEEEEEECCCCcEEEEecc--CCCceeEEE
Q 000992 158 LA-EGFDVHEPELSSSFSFKSPISWRGDG---K-YFATLSEFCNS-SKLHKRLKVWERDSGTLQASSEL--KAFMGAVLE 229 (1196)
Q Consensus 158 ~~-~~~~Vs~tqf~~~~~~v~~isWspDG---~-~lAsvss~d~~-~~~d~~irVWd~~~G~l~~~~e~--~~~~v~sla 229 (1196)
.. . ..+-....+.|+-|+ . ++|++- .+. ...-..+.+|+. . ..+..... ....+.+++
T Consensus 223 ~t~~----------~k~~~~~~cRF~~d~~~~~l~laa~~--~~~~~v~~~~~~~w~~-~-~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 223 KTPF----------SKDEMFSSCRFSVDNAQETLRLAASQ--FPGGGVRLCDISLWSG-S-NFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred cCCc----------ccchhhhhceecccCCCceEEEEEec--CCCCceeEEEeeeecc-c-cccchhhhhhccCcceeEE
Confidence 11 0 111234567788777 2 333122 221 011123445665 2 33332222 223479999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
-|+||+++|.|+.+ +.|.+++..-++.-++ .+.-|...|..|.|+||++.+++.+.+. +..+-.+
T Consensus 289 VS~dGkf~AlGT~d------GsVai~~~~~lq~~~~-vk~aH~~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l 353 (398)
T KOG0771|consen 289 VSDDGKFLALGTMD------GSVAIYDAKSLQRLQY-VKEAHLGFVTGLTFSPDSRYLASVSSDN---EAAVTKL 353 (398)
T ss_pred EcCCCcEEEEeccC------CcEEEEEeceeeeeEe-ehhhheeeeeeEEEcCCcCcccccccCC---ceeEEEE
Confidence 99999999999986 4699998766655444 2333456899999999999999988887 5555443
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.32 E-value=1.4e-10 Score=126.01 Aligned_cols=249 Identities=17% Similarity=0.313 Sum_probs=164.0
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
..|.+.+|++|+..+| ++- ....|.||....+ +...++..|+..|..|.|+|.++.|.+++.|.+
T Consensus 11 ~pitchAwn~drt~iA-v~~------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn----- 78 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIA-VSP------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN----- 78 (361)
T ss_pred CceeeeeecCCCceEE-ecc------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-----
Confidence 4678999999999999 764 3467999988433 245677789999999999999999999998753
Q ss_pred eEEEEeC-CCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCc-EEEE
Q 000992 251 SIVFYER-NGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDG-IRFM 326 (1196)
Q Consensus 251 ~V~~~e~-nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~-~~v~ 326 (1196)
--+|+. .|-. .....|- .....+..|.|||.+..+|+++..+ .|-+|... ...|+..+.+.-+-.+. .++.
T Consensus 79 -ayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 79 -AYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred -ccccccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceeeee
Confidence 445765 3321 1122221 1234588999999999999999888 89999865 33454433343332333 8899
Q ss_pred EccCCCceEEEEecCCcEEEEE-EEEeee--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCC
Q 000992 327 WHPTKPLQLICWTLDGQITTYN-FIWTTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 403 (1196)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~-~~~~~~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg 403 (1196)
|||.+-+ |..++.|+...+.. ++-.++ |.. ..+ |++ .||.. -|+-+. ...++|..|.|||+|
T Consensus 154 WhpnnVL-laaGs~D~k~rVfSayIK~Vdekpap----~pW-gsk---~PFG~-----lm~E~~-~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 154 WHPNNVL-LAAGSTDGKCRVFSAYIKGVDEKPAP----TPW-GSK---MPFGQ-----LMSEAS-SSGGWVHGVLFSPSG 218 (361)
T ss_pred ccCCcce-ecccccCcceeEEEEeeeccccCCCC----CCC-ccC---CcHHH-----HHHhhc-cCCCceeeeEeCCCC
Confidence 9998764 77777777655321 111111 100 000 111 01110 122111 346789999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCc-cccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecC
Q 000992 404 SKNCLAAILSDGCLCVVDLPAPDM-LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 404 ~~~~lAs~~~dg~v~lw~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1196)
+.||=.++|.++.+-+...+.. .+.+ ....-..+.+.|..+..+++.+.++
T Consensus 219 --~~lawv~Hds~v~~~da~~p~~~v~~~------------~~~~lP~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 219 --NRLAWVGHDSTVSFVDAAGPSERVQSV------------ATAQLPLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred --CEeeEecCCCceEEeecCCCchhccch------------hhccCCceeeEeecCCceeecCCCC
Confidence 8999999999999998876431 1111 1112357888999999988877663
No 197
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.31 E-value=1.6e-10 Score=125.74 Aligned_cols=313 Identities=12% Similarity=0.052 Sum_probs=185.9
Q ss_pred eecCcEEEEEECC-----CCCEEEEEeCCceEEEEeccCceeeeeec-ccccCccccccCccccCCCCeEEEEEccCCc-
Q 000992 114 RVEGGVRFISPSP-----DGDLLGVTTGFGQILVMTHDWDLLYENPL-EELAEGFDVHEPELSSSFSFKSPISWRGDGK- 186 (1196)
Q Consensus 114 ~~~~~I~~~awSP-----Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l-~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~- 186 (1196)
.|...|..++|++ +-+.+|+++++ .+.+..-..+. +..+ +...+. .++.....++|+-|-.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~--~ir~lq~y~D~---------d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDG--GIRLLQSYADE---------DHDESFYTCSWSYDSNT 103 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCcc--ceeeeeeccCC---------CCCcceEEEEEEecCCC
Confidence 4556788888873 33455665554 66666543332 1111 100000 2445668999987755
Q ss_pred ---eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEEEeCC-Cee
Q 000992 187 ---YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYERN-GLE 261 (1196)
Q Consensus 187 ---~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~~e~n-Gl~ 261 (1196)
++| +++ ..+.|||.|...+++.....+|.+.++.|.+.|+- ++|.|+|.| +.|++|+.. +.-
T Consensus 104 ~~p~la-~~G------~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD------~svRlwnI~~~~C 170 (385)
T KOG1034|consen 104 GNPFLA-AGG------YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD------HSVRLWNIQTDVC 170 (385)
T ss_pred CCeeEE-eec------ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC------ceEEEEeccCCeE
Confidence 677 565 35899999999999999999999999999999986 788999986 579999953 221
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC--EEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN--HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~--~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
.-.|---+.|.+.|.++.||+||..+|+++-|. ++++|+++.. +-++. .+.-|+|++..+ .+-+
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh---slk~W~l~~~~f~~~lE----------~s~~~~~~~t~~-pfpt 236 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH---SLKLWRLNVKEFKNKLE----------LSITYSPNKTTR-PFPT 236 (385)
T ss_pred EEEecccccccCcEEEEEEcCCCCeeeccCCcc---eEEEEecChhHHhhhhh----------hhcccCCCCccC-cCCc
Confidence 111111123467899999999999999999998 9999999832 11121 234455555321 0111
Q ss_pred cCCcEEEEEEE------Eeee---cCCCeeEEEEcCCEEEEeec-c----ccCCCCCceeeee----cC-CCCEEEEEEe
Q 000992 340 LDGQITTYNFI------WTTA---VMENSTALVIDGSKILVTPL-S----LSLMPPPMYLFSL----KF-PTAVTEMAFY 400 (1196)
Q Consensus 340 ~~g~~~~~~~~------~~~~---~~d~~~v~viDg~~l~lt~l-~----~~~vpppm~~~~l----~~-~~~V~~Vafs 400 (1196)
. .....+|. .-++ +-+.-++.-.-++.|..|-. + .-++-||-+..++ .. ...||-|-|+
T Consensus 237 ~--~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 237 P--KTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred c--ccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 0 00001110 0001 11122222233445555533 1 1134344333333 12 3357877777
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEE
Q 000992 401 SKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1196)
Q Consensus 401 pdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1196)
-|.-.++||.+...|.|.+|+++..+.. ..+.+.. ......|+|.+|+.|+.+|....++ ..++=|+
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~------~~ttl~~--s~~~~tVRQ~sfS~dgs~lv~vcdd--~~Vwrwd 381 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPP------KCTTLTH--SKSGSTVRQTSFSRDGSILVLVCDD--GTVWRWD 381 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCc------cCceEEe--ccccceeeeeeecccCcEEEEEeCC--CcEEEEE
Confidence 6653378999999999999999863322 0000000 1223489999999999887766554 3444443
No 198
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.1e-10 Score=141.08 Aligned_cols=219 Identities=14% Similarity=0.116 Sum_probs=138.0
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG 97 (1196)
.+...+|.+|+..|++++.+ ..|+.||+ .+++.. .+ ... .+...+..|||||+.|+.+ +.+|
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl--~tg~~~-~l-------t~~----~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDI--YTQVRE-KV-------TSF----PGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEEC--CCCCeE-Ee-------cCC----CCCcCCeeECCCCCEEEEEEeCCC
Confidence 45678999999999888642 36999998 444321 11 111 1234468999999998864 5566
Q ss_pred c--EEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-Cce--EEEEeccCceeeeeecccccCccccccCccccC
Q 000992 98 L--LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 ~--I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~t--V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
. |.+||.++++...+..+...+...+|||||+.|+..+. ++. |.+++........ +. |.+.
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~--Lt------------~~g~ 350 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR--LT------------FEGE 350 (448)
T ss_pred CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--Ee------------cCCC
Confidence 5 77789988877654444455678999999999998874 333 4333321111111 11 0111
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.....+|+|||++++ ..+.. .+...|.++|..+|+....... ....+.+|+|||+.|+.++.+.. ...+
T Consensus 351 --~~~~~~~SpDG~~l~-~~~~~---~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~~~g---~~~l 419 (448)
T PRK04792 351 --QNLGGSITPDGRSMI-MVNRT---NGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTTYQG---KQVL 419 (448)
T ss_pred --CCcCeeECCCCCEEE-EEEec---CCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEecCC---ceEE
Confidence 124579999999998 44422 1223566678877776544332 23345689999999988776432 3457
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 253 VFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
.+++.+|..... ++.+ .+.+...+|||
T Consensus 420 ~~~~~~G~~~~~--l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSIDGRFKAR--LPAG-QGEVKSPAWSP 446 (448)
T ss_pred EEEECCCCceEE--CcCC-CCCcCCCccCC
Confidence 778888865443 3322 34577889998
No 199
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.29 E-value=1.3e-10 Score=128.87 Aligned_cols=214 Identities=12% Similarity=0.087 Sum_probs=143.2
Q ss_pred EeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
.+.+|.+.|..++|+|- .+.||+||+|-+|.+|..--+-+. .. ...+|- ...+|.-.|-.|.|.|-..-+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~-----ltepvv--~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT-RD-----LTEPVV--ELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc-cC-----cccceE--EEeecceeEEEEeecccchhhH
Confidence 66678999999999994 578999999999999963211111 00 011110 1126677889999999876443
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEec
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDIN 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~ 268 (1196)
.+++ .|.+|.|||..+|+-+-++. |+..+.+++|+-||++++++++|+ .|++|+ |.|....+- .
T Consensus 148 lsag------~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK------kvRv~dpr~~~~v~e~--~ 212 (472)
T KOG0303|consen 148 LSAG------SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK------KVRVIDPRRGTVVSEG--V 212 (472)
T ss_pred hhcc------CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc------eeEEEcCCCCcEeeec--c
Confidence 1333 57999999999999888877 999999999999999999999975 699999 445443331 2
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE-EEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-LKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy-lkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
.|....-..+-|=.+|.++.+|-+......+-||+..|..-- .-+++. ..++ ..=.|+|++...-.++.+||.+.-
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 222234456778899996655554333337999999885321 112222 1233 555788888764444445666654
Q ss_pred EEE
Q 000992 347 YNF 349 (1196)
Q Consensus 347 ~~~ 349 (1196)
+.+
T Consensus 291 yEi 293 (472)
T KOG0303|consen 291 FEI 293 (472)
T ss_pred EEe
Confidence 443
No 200
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=6.7e-10 Score=133.20 Aligned_cols=208 Identities=18% Similarity=0.143 Sum_probs=130.5
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---ceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.++|.+++....+-.+...+.+.+|||||+.||.++.+ .+|.+|+..-... ..+. .+..
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~--------------~~~~ 234 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVA--------------SFPG 234 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEee--------------cCCC
Confidence 5788888776554333345568999999999999998743 3677765321111 1111 1112
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+..++|+|||+.|+ .+... .+...|.+||..+|+..... .+.+.....+|+|||+.|+.++...+ ...|-.
T Consensus 235 ~~~~~~~spDg~~l~-~~~~~---~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g---~~~iy~ 306 (417)
T TIGR02800 235 MNGAPAFSPDGSKLA-VSLSK---DGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGG---SPQIYM 306 (417)
T ss_pred CccceEECCCCCEEE-EEECC---CCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCC---CceEEE
Confidence 345789999999887 43311 23467999999667654433 34445567899999999988776432 346777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
++.++.....+.. ....+..++|||||+.|+....+.+...|.+|+..+..+ +.+.- ........|+|++...
T Consensus 307 ~d~~~~~~~~l~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~~-~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 307 MDADGGEVRRLTF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLTD-TGLDESPSFAPNGRMI 379 (417)
T ss_pred EECCCCCEEEeec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEccC-CCCCCCceECCCCCEE
Confidence 7765433222211 123467889999999999998775444688888876433 11211 1111345799998763
Q ss_pred EE
Q 000992 335 LI 336 (1196)
Q Consensus 335 L~ 336 (1196)
+.
T Consensus 380 ~~ 381 (417)
T TIGR02800 380 LY 381 (417)
T ss_pred EE
Confidence 33
No 201
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.28 E-value=1.5e-10 Score=127.95 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=169.5
Q ss_pred EeeeecCcEEEEEECCCC--CEEEEEeCCceEEEEeccCceeeeee---ccccc-CccccccCccccCCCCeEEEEEcc-
Q 000992 111 VVGRVEGGVRFISPSPDG--DLLGVTTGFGQILVMTHDWDLLYENP---LEELA-EGFDVHEPELSSSFSFKSPISWRG- 183 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg--~~LA~~s~d~tV~l~~~~~d~~~~~~---l~~~~-~~~~Vs~tqf~~~~~~v~~isWsp- 183 (1196)
.++ |.++|+.+.-+|-| -+.|+=+..|.|.+|+.. ..+.... +.... ...+| -.|.+|...=..+.|||
T Consensus 147 ~i~-h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~-~~l~~l~~~~~~~~~s~~~Pl--~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 147 SIP-HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLA-PHLNALSEPGLEVKDSEFRPL--FTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccc-cccccceeeecccCCcceeeeecccCcEEEEEch-hhhhhhcCccccccccccCce--EEecccCccceeeecccc
Confidence 344 46777777777765 455555788999998632 1111110 00000 11111 12335666668999999
Q ss_pred -CCceEEEeeccccccCCCCEEEEEECCCCcEEEE---eccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEEEe-C
Q 000992 184 -DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYE-R 257 (1196)
Q Consensus 184 -DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~---~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~~e-~ 257 (1196)
.|. |+ ++. -.+.|++|.+.+|.-..- +.+|...|..|+|||.- ..+||+|.|+ .|++|+ |
T Consensus 223 ~~g~-Ll-sGD------c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg------sIrIWDiR 288 (440)
T KOG0302|consen 223 KTGR-LL-SGD------CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG------SIRIWDIR 288 (440)
T ss_pred cccc-cc-cCc------cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc------eEEEEEec
Confidence 443 23 121 236799999988764432 34577889999999975 5899999975 699999 6
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE-EEEEEEEecCCcEEEEEccCCCceEE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-LKYEIRYLRRDGIRFMWHPTKPLQLI 336 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy-lkq~l~~~~~~~~~v~Wsp~~~~~L~ 336 (1196)
+|....-. +...+...|+-|+||-+-.+||+|+.|+ +++|||+.+..-- -..++.+|..-.+++.|||.....++
T Consensus 289 s~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdG---t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 289 SGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDG---TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred CCCcccee-EeeccCCceeeEEccCCcceeeecCCCc---eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEE
Confidence 66433322 2223456799999999999999999999 9999999875321 01245555444599999999888888
Q ss_pred EEecCCcEEEEEEEEeeecCCCee-EEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 337 CWTLDGQITTYNFIWTTAVMENST-ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~d~~~-v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
+...|.++.+++..-. .+.... .-...| ...+|| +-.+.-+-+.-|..|.|++.-+ .+|++.+.||
T Consensus 365 asg~D~QitiWDlsvE--~D~ee~~~~a~~~---------L~dlPp-QLLFVHqGQke~KevhWH~QiP-G~lvsTa~dG 431 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSVE--ADEEEIDQEAAEG---------LQDLPP-QLLFVHQGQKEVKEVHWHRQIP-GLLVSTAIDG 431 (440)
T ss_pred eccCCCcEEEEEeecc--CChhhhccccccc---------hhcCCc-eeEEEecchhHhhhheeccCCC-CeEEEecccc
Confidence 8888888875444322 221110 011111 123444 3333322344588999999874 5667766675
Q ss_pred cEEEE
Q 000992 416 CLCVV 420 (1196)
Q Consensus 416 ~v~lw 420 (1196)
+.+|
T Consensus 432 -fnVf 435 (440)
T KOG0302|consen 432 -FNVF 435 (440)
T ss_pred -eeEE
Confidence 3344
No 202
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1e-09 Score=132.33 Aligned_cols=205 Identities=15% Similarity=0.071 Sum_probs=125.3
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---ceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.++|.+++....+..+...+...+|||||+.||.++.+ ..|.+|+.... ....+.. + ..
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g--~~~~l~~-----------~---~g 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG--RREQITN-----------F---EG 243 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC--CEEEccC-----------C---CC
Confidence 3777888876554343346778999999999999998744 24555542211 1111111 1 12
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.....+|||||+.|| .+... .++..|.+||..+|+..... .+.+.....+|+|||+.|+..+...+ ...|-.
T Consensus 244 ~~~~~~~SpDG~~la-~~~~~---~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g---~~~iy~ 315 (430)
T PRK00178 244 LNGAPAWSPDGSKLA-FVLSK---DGNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGG---KPQIYK 315 (430)
T ss_pred CcCCeEECCCCCEEE-EEEcc---CCCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCC---CceEEE
Confidence 234689999999998 43311 23457999999777765433 34455677899999999988875422 346766
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
++.++......+... ......+|||||+.|+....+.....|.+|+..+.... .+.. ........|+|++..
T Consensus 316 ~d~~~g~~~~lt~~~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~---~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 316 VNVNGGRAERVTFVG---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR---ILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred EECCCCCEEEeecCC---CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE---EccC-CCCCCCceECCCCCE
Confidence 775433222222211 12346789999999999876543335778887765431 1211 111134589998875
No 203
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.24 E-value=3.7e-10 Score=125.44 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=150.0
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEECCCC---------eEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEE
Q 000992 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGN---------ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVM 143 (1196)
Q Consensus 75 ~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~~---------~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~ 143 (1196)
.+.|.+++|.|- .+.||+||+|-+|++|....+ ..++.| |...|--++|.|-- +.|++++.|.+|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEE
Confidence 368999999994 578999999999999997531 124555 58899999999984 578999999999998
Q ss_pred eccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 144 ~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
+-. ++..+-.. .|.+.|.+++|+-||.+|+| .. .|++|||||..+|++.+...+|.|
T Consensus 160 nv~----tgeali~l------------~hpd~i~S~sfn~dGs~l~T-tc------kDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 160 NVG----TGEALITL------------DHPDMVYSMSFNRDGSLLCT-TC------KDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred ecc----CCceeeec------------CCCCeEEEEEeccCCceeee-ec------ccceeEEEcCCCCcEeeecccccC
Confidence 742 21111111 26688999999999999994 44 479999999999999988767776
Q ss_pred ce-eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEc-cCCcceEE
Q 000992 224 MG-AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVK 300 (1196)
Q Consensus 224 ~v-~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~ 300 (1196)
.- .-.-|=-+|. |++++... .....+.+|+.+.+.... .+. ....+.|.==-|.||..++-.++. |+ .|+
T Consensus 217 ~k~~Raifl~~g~-i~tTGfsr--~seRq~aLwdp~nl~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~---~IR 289 (472)
T KOG0303|consen 217 AKPARAIFLASGK-IFTTGFSR--MSERQIALWDPNNLEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGKGDS---SIR 289 (472)
T ss_pred CCcceeEEeccCc-eeeecccc--ccccceeccCcccccCcc-eeEEeccCCceEEeeecCCCCEEEEEecCCc---ceE
Confidence 42 4566888999 66665532 235678999977554321 111 112345766779999999887764 34 799
Q ss_pred EEEecCCEEEE
Q 000992 301 ICFFSNNHWYL 311 (1196)
Q Consensus 301 lW~~~n~~wyl 311 (1196)
-+.+.|-.-|+
T Consensus 290 YyEit~d~P~~ 300 (472)
T KOG0303|consen 290 YFEITNEPPFV 300 (472)
T ss_pred EEEecCCCcee
Confidence 99988755443
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.24 E-value=1.2e-10 Score=126.65 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=150.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-E---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec----cC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-T---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~----~~ 147 (1196)
..|++.+|++|+.++|++-.+.+|.||...+.. . .++..|+..|+++.|+|.+..|++++.|.+-.+|+. .|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 469999999999999999999999999988755 2 356668999999999999999999999999999975 34
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-----EeccCC
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-----SSELKA 222 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-----~~e~~~ 222 (1196)
.+.-.+. .++....+|.|+|.+.-|| +++ +.+.|-||-- +++-.. +-.|+.
T Consensus 91 kptlvLl----------------RiNrAAt~V~WsP~enkFA-VgS------gar~isVcy~-E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 91 KPTLVLL----------------RINRAATCVKWSPKENKFA-VGS------GARLISVCYY-EQENDWWVSKHIKKPIR 146 (361)
T ss_pred ccceeEE----------------EeccceeeEeecCcCceEE-ecc------CccEEEEEEE-ecccceehhhhhCCccc
Confidence 4432221 1234568999999999999 887 4589999988 666554 456778
Q ss_pred CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-----------CCee----EEEEEec-cCCCCcEEEEEEccCCCe
Q 000992 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-----------NGLE----RSSFDIN-EQIDSTVELLKWNCMSDL 286 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-----------nGl~----~~~f~l~-~~~~~~V~~laWSpDg~~ 286 (1196)
..|.+++|.|++-++|.|+.|. ..++|.. +++- -|+.... ....++|..+.|||+|..
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~------k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDG------KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred cceeeeeccCCcceecccccCc------ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 8899999999999999999763 4555531 1000 0110000 122468999999999999
Q ss_pred eEEEEccCCcceEEEEEecC
Q 000992 287 LAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 287 LAs~~~d~~~~~V~lW~~~n 306 (1196)
||-.+.|. +|-+=|-.+
T Consensus 221 lawv~Hds---~v~~~da~~ 237 (361)
T KOG1523|consen 221 LAWVGHDS---TVSFVDAAG 237 (361)
T ss_pred eeEecCCC---ceEEeecCC
Confidence 99999998 776665544
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.24 E-value=4.6e-11 Score=138.03 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=121.2
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccc-cccccCCCCCCEEEEEEccC-CCEEEEEECCCc
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-IEHIDLEPGDSITAFDYLME-KEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~v~~v~~spd-~~~La~as~dG~ 98 (1196)
.+.++.||+ |...|.++++|++|..|.+ ..+...- ...-|+. |..| +++|.++.|+|- .+.|++++.|-+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~--~a~gl~e-~~~tPe~~lt~h----~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRL--TANGLPE-NEMTPEKILTIH----GEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEe--ccCCCCc-ccCCcceeeecc----cceEEEEEecchhhhHhhhhhccce
Confidence 678889995 5688999999999999999 4433321 1122322 3333 479999999996 478999999999
Q ss_pred EEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee-eeecccccCccccccCccccCCCC
Q 000992 99 LLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~-~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
|+|||+.+++. ..+| |.+.|..++|||||+.+|++..||+|++.. +.+ +.++.... .+| ..+
T Consensus 702 i~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~----Prs~e~pv~Eg~--gpv--------gtR 766 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYE----PRSREQPVYEGK--GPV--------GTR 766 (1012)
T ss_pred eeeeehhhhhhhheecc-CcCceeEEEECCCCcceeeeecCceEEEeC----CCCCCCccccCC--CCc--------cCc
Confidence 99999988654 4677 589999999999999999999999998864 211 12221111 112 123
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~ 210 (1196)
-..|-|-=||++++ |.+.+.. ..|+|.+||.+
T Consensus 767 gARi~wacdgr~vi-v~Gfdk~--SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 767 GARILWACDGRIVI-VVGFDKS--SERQVQMYDAQ 798 (1012)
T ss_pred ceeEEEEecCcEEE-Eeccccc--chhhhhhhhhh
Confidence 46899999999999 7777654 57899999984
No 206
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=7e-10 Score=125.16 Aligned_cols=237 Identities=11% Similarity=0.052 Sum_probs=153.4
Q ss_pred ccCCCCCCEEEEEEccC-------CCEEEEEECCCcEEEEECCCC-e---EEEee------------------eecCcEE
Q 000992 70 IDLEPGDSITAFDYLME-------KEALIVGTSSGLLLLHSVDGN-A---TEVVG------------------RVEGGVR 120 (1196)
Q Consensus 70 ~~~~~~~~v~~v~~spd-------~~~La~as~dG~I~lw~~~~~-~---~e~vg------------------~~~~~I~ 120 (1196)
|++.-...+.+++|.-- |+++|+|+-+-+|.|||++-. . +-++| +|.+.|.
T Consensus 168 HD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 168 HDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred cceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH
Confidence 44444456677777543 589999999999999998631 1 11333 4778889
Q ss_pred EEEECCC-CCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccc
Q 000992 121 FISPSPD-GDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNS 197 (1196)
Q Consensus 121 ~~awSPD-g~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~ 197 (1196)
+++|+-. -..||+||.|.||++|+- ..++...+. .|.+.|.++.|.|.- ++|. +|+
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LL-sGs---- 306 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLL-SGS---- 306 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehh----------------hcCCceeEEEecCCCceEEE-ecc----
Confidence 9999877 457999999999999763 233332222 244567999999865 4566 455
Q ss_pred cCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE
Q 000992 198 SKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE 276 (1196)
Q Consensus 198 ~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~ 276 (1196)
.|+++++.|... +..-... ..++.|..++|.|.......++.+ .++|+-|+......-.|++..| .+.|.
T Consensus 307 --~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~td-----dG~v~~~D~R~~~~~vwt~~AH-d~~IS 377 (463)
T KOG0270|consen 307 --YDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTD-----DGTVYYFDIRNPGKPVWTLKAH-DDEIS 377 (463)
T ss_pred --ccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecC-----CceEEeeecCCCCCceeEEEec-cCCcc
Confidence 469999999743 2111111 256778999999988776666544 3578888842221233555554 56899
Q ss_pred EEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEec
Q 000992 277 LLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 277 ~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~ 340 (1196)
.|++|+.-. +|++++.|+ +|+||++..-.-....+-.+.- ++ .+++..|+-+..++++..
T Consensus 378 gl~~n~~~p~~l~t~s~d~---~Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDK---VVKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred eEEecCCCCcceeeccccc---eEEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCc
Confidence 999998654 688888998 9999998753211111111100 12 445666766665555443
No 207
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.22 E-value=5e-10 Score=130.72 Aligned_cols=273 Identities=15% Similarity=0.138 Sum_probs=175.3
Q ss_pred EEECC---CCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccccc
Q 000992 122 ISPSP---DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS 198 (1196)
Q Consensus 122 ~awSP---Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~ 198 (1196)
..|++ ....||.+.+||.|.+.+.. .+....+. .+. -.|..|.+.|..+.|-| |+... |+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~-----~~~fr~ee-~~l---k~~~aH~nAifDl~wap-ge~~l-Vsa----- 118 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTK-----SIVFRLEE-RQL---KKPLAHKNAIFDLKWAP-GESLL-VSA----- 118 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecch-----hhhcchhh-hhh---cccccccceeEeeccCC-CceeE-EEc-----
Confidence 56655 35689999999999886421 11111110 000 12337899999999999 77655 332
Q ss_pred CCCCEEEEEECCCCcEEEE--eccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC--CCeeEE-EEE------
Q 000992 199 KLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER--NGLERS-SFD------ 266 (1196)
Q Consensus 199 ~~d~~irVWd~~~G~l~~~--~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~--nGl~~~-~f~------ 266 (1196)
.+|.++|+||..++.+.-. .-+|.+.+.+++|+|... .+++|++|+ .|.+|+. |+..+- +|.
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg------~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG------EILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCC------cEEEEEEeccchhhHHHHhhhhhcc
Confidence 2689999999988888876 678999999999999765 678888864 6999983 331000 000
Q ss_pred --------------ec--cCCCCcEEE---EEEccCCCeeEEEEc-cCCcceEEEEEec-CCEEEEEEEEE---EecC--
Q 000992 267 --------------IN--EQIDSTVEL---LKWNCMSDLLAAVVR-FEEYDSVKICFFS-NNHWYLKYEIR---YLRR-- 320 (1196)
Q Consensus 267 --------------l~--~~~~~~V~~---laWSpDg~~LAs~~~-d~~~~~V~lW~~~-n~~wylkq~l~---~~~~-- 320 (1196)
++ .-+...|.+ +-+.-|...||+++. |+ +|++||+. ||.-|..+.+. ++..
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~---~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADS---TIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCc---ceEEEeecccccccccCCCcccCccCccc
Confidence 00 001234555 667788889999888 77 99999976 55555443332 1111
Q ss_pred -C--cEEEEEccCCCceEEEEecCCcEEEEEEEE-eee--------------------cCCCeeEEEEcCCEEEEeeccc
Q 000992 321 -D--GIRFMWHPTKPLQLICWTLDGQITTYNFIW-TTA--------------------VMENSTALVIDGSKILVTPLSL 376 (1196)
Q Consensus 321 -~--~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~-~~~--------------------~~d~~~v~viDg~~l~lt~l~~ 376 (1196)
. .+.+.-|.-|.+ |...+.|+.++.|+..- ++. +++..++...-....++|-+..
T Consensus 270 rs~G~~nL~lDssGt~-L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTY-LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred ceeeeEEEEecCCCCe-EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 1 256666766676 44455588887665421 000 4444444433344567777766
Q ss_pred cCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 377 SLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 377 ~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
...||-.. +.|.-.|.+|.|.|... .-+|+.+.|.++++|++..
T Consensus 349 ~e~~~~~l---~Ght~eVt~V~w~pS~~-t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 349 PEAPPALL---LGHTREVTTVRWLPSAT-TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ccCChhhh---hCcceEEEEEeeccccC-CCceeeccCcceEEEeccC
Confidence 55554432 45777899999999873 4567779999999999954
No 208
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.21 E-value=6.1e-08 Score=113.57 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=165.8
Q ss_pred EEEEEeCC----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC----CCcEEEEECC
Q 000992 34 RLFFASSA----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----SGLLLLHSVD 105 (1196)
Q Consensus 34 ~l~~~s~~----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~----dG~I~lw~~~ 105 (1196)
++|+++-+ ++|+.++.+ ...+++... .. +.....+..++++|+++.|.++.+ +|.|..|..+
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d--~~~g~l~~~------~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~ 70 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFD--EETGTLTLV------QT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRID 70 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEE--TTTTEEEEE------EE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEc--CCCCCceEe------ee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEEC
Confidence 35666544 578888773 333322211 00 011356788999999999999987 4688887664
Q ss_pred C--CeEEEeeeec---CcEEEEEECCCCCEEEEEe-CCceEEEEeccC--ceeeeeecccccCccccccCccccCCCCeE
Q 000992 106 G--NATEVVGRVE---GGVRFISPSPDGDLLGVTT-GFGQILVMTHDW--DLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 106 ~--~~~e~vg~~~---~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~--d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
. +.++.++... .+-..++.+|||++|.++. .+|+|.++..+- .+.............+....|. .....
T Consensus 71 ~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~---~~h~H 147 (345)
T PF10282_consen 71 PDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE---GPHPH 147 (345)
T ss_dssp TTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS---STCEE
T ss_pred CCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccc---cccce
Confidence 3 6665444332 3456799999999999997 588888775332 1111111100000000000111 12346
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCc--EEE----EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT--LQA----SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~--l~~----~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
++.|+|||+++. +... +...|++|+.+.+. +.. ......| -+.++|+|||+++...... ...
T Consensus 148 ~v~~~pdg~~v~-v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~e~-----s~~ 215 (345)
T PF10282_consen 148 QVVFSPDGRFVY-VPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVNEL-----SNT 215 (345)
T ss_dssp EEEE-TTSSEEE-EEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEETT-----TTE
T ss_pred eEEECCCCCEEE-EEec-----CCCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcCCcCEEEEecCC-----CCc
Confidence 899999999988 6543 34578898875443 533 1222333 4899999999998887765 357
Q ss_pred EEEEeCC---CeeEEEEEec-c----CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec--CCEEEEEEEEEEecCC
Q 000992 252 IVFYERN---GLERSSFDIN-E----QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS--NNHWYLKYEIRYLRRD 321 (1196)
Q Consensus 252 V~~~e~n---Gl~~~~f~l~-~----~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~--n~~wylkq~l~~~~~~ 321 (1196)
|..|+.+ |.......+. . ........|+.||||++|-++.... ++|-++++. +....+.+.+......
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~ 293 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKF 293 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCC
Confidence 8877754 3222111222 1 1123588999999999998877653 589999983 3443344444442233
Q ss_pred cEEEEEccCCCceEEEEec-CCcEE
Q 000992 322 GIRFMWHPTKPLQLICWTL-DGQIT 345 (1196)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~-~g~~~ 345 (1196)
+..+.++|++.. |.+.++ ++.+.
T Consensus 294 Pr~~~~s~~g~~-l~Va~~~s~~v~ 317 (345)
T PF10282_consen 294 PRHFAFSPDGRY-LYVANQDSNTVS 317 (345)
T ss_dssp EEEEEE-TTSSE-EEEEETTTTEEE
T ss_pred ccEEEEeCCCCE-EEEEecCCCeEE
Confidence 588999999876 555554 44443
No 209
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=4.9e-10 Score=126.38 Aligned_cols=245 Identities=9% Similarity=-0.019 Sum_probs=163.3
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeecccc---------ccccccCCC-CCCEEEEEEccCC-CEEEEEECCCcE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISA---------EIEHIDLEP-GDSITAFDYLMEK-EALIVGTSSGLL 99 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~-~~~v~~v~~spd~-~~La~as~dG~I 99 (1196)
-++.+.+++=+..|-.||+. ...... ...+|-+ +-+++...- .+.|.+++|.-.- ..||+||+|.||
T Consensus 191 ~gNyvAiGtmdp~IeIWDLD-I~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLD-IVDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccc-cccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 46788888889999999984 222110 0001110 001110000 3456777776654 589999999999
Q ss_pred EEEECCCCeEE-EeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATE-VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e-~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
++||++++++. +..+|.+.|.+++|.|. .+.|.+||-|++|.+-+ |+- .-....+. .++.|
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-~~s~~~wk---------------~~g~V 332 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-SNSGKEWK---------------FDGEV 332 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc-cccCceEE---------------eccce
Confidence 99999998875 66778899999999987 67899999999998854 210 00111111 23567
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~ 254 (1196)
-.++|.|-......+++ .|++++=+|.+ .|++..+...|++.|.+|++++.- +++++++.+ ..|++
T Consensus 333 Ekv~w~~~se~~f~~~t------ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vkl 400 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVST------DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKL 400 (463)
T ss_pred EEEEecCCCceeEEEec------CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc------ceEEE
Confidence 89999998876552443 57999999964 679999999999999999999975 467777775 46999
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCE
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|...+..-+...-+.-.-+...+.++.|+-- +||.|+... .+++|++.+++
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~---~~~vwd~~~~~ 452 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA---VLRVWDIFTNS 452 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccc---eEEEeecccCh
Confidence 9854432211000000012344566666644 677777776 89999987754
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=7e-09 Score=125.82 Aligned_cols=285 Identities=15% Similarity=0.161 Sum_probs=185.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccc-ccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQ-NERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+++.++.+.++.+.++..|++|..|.- +. .....+... +-+| .+.|.+++||+||..|.+|+.-|.+.
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d--~~~~~~~~t~t~----lHWH----~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRD--FGSSDDSETCTL----LHWH----HDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEec--cccccccccceE----EEec----ccccceeEEecCCceEeecccceEEE
Confidence 3577888999999998888999999987 33 121112211 5566 46899999999999999999999999
Q ss_pred EEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccc-cCccccCCCCeEEE
Q 000992 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPI 179 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs-~tqf~~~~~~v~~i 179 (1196)
+|...|++-+.+....+.|..+.|||||++.++..+|+.|.+.... +......+... ++.+ ++. ....+-...+
T Consensus 277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~-dl~~k~tIsgi---~~~~~~~k-~~~~~l~t~~ 351 (792)
T KOG1963|consen 277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS-DLEIKSTISGI---KPPTPSTK-TRPQSLTTGV 351 (792)
T ss_pred EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc-chhhhhhccCc---cCCCcccc-ccccccceeE
Confidence 9999998766677777889999999999999999999999876431 11111111100 0000 000 0011233567
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-----cCCC------ceeEEEEcCCCCeEEEEecCCC---
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-----LKAF------MGAVLEWMPSGANIAAVYDRKS--- 245 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-----~~~~------~v~slawsPdG~~IAs~s~d~~--- 245 (1196)
+..|--..++ ..+ ..+.|++||..+-..++.++ .+++ .+.+++.+-.|+++|+......
T Consensus 352 ~idpr~~~~v-ln~------~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 352 SIDPRTNSLV-LNG------HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred EEcCCCCcee-ecC------CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 7777444444 343 35899999987766665442 1222 2477888888999999854211
Q ss_pred -CCCCCeEEEEeCCCeeEEEEEec----cCCCCcEEE-EEEccCCC-eeEEEEccCCcceEEEEEec--------CCEEE
Q 000992 246 -ENKCPSIVFYERNGLERSSFDIN----EQIDSTVEL-LKWNCMSD-LLAAVVRFEEYDSVKICFFS--------NNHWY 310 (1196)
Q Consensus 246 -~~~~~~V~~~e~nGl~~~~f~l~----~~~~~~V~~-laWSpDg~-~LAs~~~d~~~~~V~lW~~~--------n~~wy 310 (1196)
.+....++||-.|+... .|.|. .||+..+.. +..+|-.. ..++++.|+ .+++|-.. .--|.
T Consensus 425 ~~~~e~~LKFW~~n~~~k-t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg---~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSK-TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG---DFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred ccCceEEEEEEEEcCCcc-eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC---eEEEEEEecccccCcCccceE
Confidence 12246799999987654 35554 566554444 44455444 788999998 99999983 22355
Q ss_pred EEEEEEEecCCcEEEEEccCCC
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKP 332 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~ 332 (1196)
++..=.|+........|+.||.
T Consensus 501 c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred EeeeeccccCcccchhhcCCCc
Confidence 4433334322235667777763
No 211
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.19 E-value=3.6e-09 Score=120.17 Aligned_cols=290 Identities=14% Similarity=0.149 Sum_probs=187.1
Q ss_pred EEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--EEEEECCCC--eEE
Q 000992 35 LFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--LLLHSVDGN--ATE 110 (1196)
Q Consensus 35 l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~--I~lw~~~~~--~~e 110 (1196)
+-++|....+..||.+..... ..+..+.- ...+.+|.|..... |++++..|+ |.+|..++. ++.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~---------~~~~~~t~--~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK---------SEYVHQTA--EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred eeeeccCCceEEeecccccCc---------cccccCCC--CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccc
Confidence 445554344899998421111 11222222 23599999998765 777766555 677887764 344
Q ss_pred Eeeeec----CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 111 VVGRVE----GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 111 ~vg~~~----~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
.++... -.|.|+++| .++.+++..++|+||+- ......... ++|.+.|..+.+.-...
T Consensus 73 ~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl----~~kl~hr~l-----------kdh~stvt~v~YN~~De 134 (673)
T KOG4378|consen 73 RVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDL----RAKLIHRFL-----------KDHQSTVTYVDYNNTDE 134 (673)
T ss_pred eeeccccchHHHHhhhhcc---eeeeccCcCceeeehhh----HHHHHhhhc-----------cCCcceeEEEEecCCcc
Confidence 444322 236667776 88999999999988752 222222111 25667889999999999
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
|||+ .+. .+-|-|-+..++..-.++....| .+.-+.|||.-+.+.+.-.| +..|.+|+.+|.... |
T Consensus 135 yiAs-vs~------gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd-----~G~VtlwDv~g~sp~-~ 201 (673)
T KOG4378|consen 135 YIAS-VSD------GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD-----KGAVTLWDVQGMSPI-F 201 (673)
T ss_pred eeEE-ecc------CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc-----CCeEEEEeccCCCcc-c
Confidence 9994 543 25688888867665555543323 45689999998865544333 357999999986532 2
Q ss_pred EeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCc
Q 000992 266 DINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
.....|......|+|||-.+ +|++.+.|. .|.+||..... +...+.+ ..+ ..++|.++|.. |..++..|.
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dk---ki~~yD~~s~~--s~~~l~y--~~Plstvaf~~~G~~-L~aG~s~G~ 273 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDK---KINIYDIRSQA--STDRLTY--SHPLSTVAFSECGTY-LCAGNSKGE 273 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccc---eEEEeeccccc--ccceeee--cCCcceeeecCCceE-EEeecCCce
Confidence 22233456678999999665 678888888 89999987532 2334444 233 77999998865 888888888
Q ss_pred EEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCC
Q 000992 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 403 (1196)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg 403 (1196)
+..|+..- .|.|.... -.|...|.+|||-|..
T Consensus 274 ~i~YD~R~---------------------------~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRS---------------------------TKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEeccc---------------------------CCCCceEe-eecccceeEEEeeecc
Confidence 87665431 13343321 1377789999999975
No 212
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.18 E-value=1e-07 Score=111.75 Aligned_cols=250 Identities=16% Similarity=0.178 Sum_probs=157.1
Q ss_pred ceeEEeeecCCCEEEEEeCC----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CC
Q 000992 22 ILQFSALDIEQNRLFFASSA----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~d 96 (1196)
.+..+++|+++..||++++. +.|..+..+..++..+ .+.+.+. .+..+..++++|+++.|.++. .+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~-~~~~~~~--------~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT-LLNSVPS--------GGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE-EEEEEEE--------SSSCEEEEEECTTSSEEEEEETTT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE-Eeeeecc--------CCCCcEEEEEecCCCEEEEEEccC
Confidence 67789999999999999773 4677777621212221 1221111 246788999999999999886 58
Q ss_pred CcEEEEECCC-CeEE-E---e---ee-------ecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCce--eee---eec
Q 000992 97 GLLLLHSVDG-NATE-V---V---GR-------VEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDL--LYE---NPL 155 (1196)
Q Consensus 97 G~I~lw~~~~-~~~e-~---v---g~-------~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~--~~~---~~l 155 (1196)
|+|.+++++. +.+. . + |. ......++.|+|||+.|.++. +...|.++..+-+. +.. ..+
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999999875 4442 1 1 10 123478999999999988774 34467666532211 211 111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEEEEe--c----cCC--Cce
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQASS--E----LKA--FMG 225 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~~~~--e----~~~--~~v 225 (1196)
. ...+-..+.|+|||+++- +.. ...++|.+++.. +|.+.... . ... ...
T Consensus 189 ~---------------~G~GPRh~~f~pdg~~~Y-v~~-----e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 189 P---------------PGSGPRHLAFSPDGKYAY-VVN-----ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp S---------------TTSSEEEEEE-TTSSEEE-EEE-----TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred c---------------cCCCCcEEEEcCCcCEEE-Eec-----CCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 1 113447899999999886 543 145788888875 56543321 1 111 146
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC---CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n---Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW 302 (1196)
..|+++|||++|.++.+. ...|.+|+.+ |.....-.++.. ....+.++++|||++|+++..+. +.|.+|
T Consensus 248 ~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s--~~v~vf 319 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDS--NTVSVF 319 (345)
T ss_dssp EEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTT--TEEEEE
T ss_pred eeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCC--CeEEEE
Confidence 889999999999888775 3589999863 433221122211 23478999999999999998765 378888
Q ss_pred Eec--CCEE
Q 000992 303 FFS--NNHW 309 (1196)
Q Consensus 303 ~~~--n~~w 309 (1196)
+++ +..+
T Consensus 320 ~~d~~tG~l 328 (345)
T PF10282_consen 320 DIDPDTGKL 328 (345)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCcE
Confidence 774 5554
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.8e-09 Score=116.45 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=124.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceee---ccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKT---AISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG 97 (1196)
.+.+++|.|-+...+++.-..+|..|..+ .+....-++. +.+..+..++= ...|++++|.+||-.|++++ .|.
T Consensus 142 nvtclawRPlsaselavgCr~gIciW~~s-~tln~~r~~~~~s~~~~qvl~~pg--h~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVGCRAGICIWSDS-RTLNANRNIRMMSTHHLQVLQDPG--HNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred ceeEEEeccCCcceeeeeecceeEEEEcC-cccccccccccccccchhheeCCC--CceeeEEEEcCCCCEEeecccCcc
Confidence 79999999998777776665669999985 2322211111 11111111110 25799999999999999886 456
Q ss_pred cEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe--ccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~--~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|+|||++++.. .+.-.--+|+.-+.|||||..|..++-|+...+|+ +.|.. |... . ..+
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~--erw~-l--------------gsg 281 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK--ERWI-L--------------GSG 281 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee--ccee-c--------------cCC
Confidence 799999998653 33322257899999999999999999999999994 44432 1111 1 113
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEE-EECCCCcEE-----------E------Eecc---CCCceeEEEEcCC
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKV-WERDSGTLQ-----------A------SSEL---KAFMGAVLEWMPS 233 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irV-Wd~~~G~l~-----------~------~~e~---~~~~v~slawsPd 233 (1196)
.+..-.|+|+|.+|..+.+.. .+..++ ++.+.+... . +..+ .-|...+++|-|.
T Consensus 282 rvqtacWspcGsfLLf~~sgs-----p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps 356 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGS-----PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS 356 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCC-----ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence 678899999999876333311 111111 011111111 0 0011 2355689999999
Q ss_pred CCeEEEEec
Q 000992 234 GANIAAVYD 242 (1196)
Q Consensus 234 G~~IAs~s~ 242 (1196)
|+++|+.-.
T Consensus 357 GeyLav~fK 365 (445)
T KOG2139|consen 357 GEYLAVIFK 365 (445)
T ss_pred CCEEEEEEc
Confidence 999998744
No 214
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=4e-09 Score=126.16 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=124.8
Q ss_pred CCEEEEEEccCCCE-EEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-C--ceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEA-LIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-F--GQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~-La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d--~tV~l~~~~~d 148 (1196)
+...+-.|||||+. ++..+.. .+|.++|+.+++.+.+....+.+.+.+|||||+.||.... + ..|.+++....
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 35778999999985 6654443 4688899999887755545666778999999998887643 3 34555442221
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sl 228 (1196)
.. ..+... ........|+|||+.++.++.. .+...|.+.|..+|+....... +. ...
T Consensus 268 ~~--~~LT~~--------------~~~d~~p~~SPDG~~I~F~Sdr----~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~ 324 (419)
T PRK04043 268 TL--TQITNY--------------PGIDVNGNFVEDDKRIVFVSDR----LGYPNIFMKKLNSGSVEQVVFH--GK-NNS 324 (419)
T ss_pred cE--EEcccC--------------CCccCccEECCCCCEEEEEECC----CCCceEEEEECCCCCeEeCccC--CC-cCc
Confidence 11 111111 1112456899999999854432 1234788889977877554332 11 134
Q ss_pred EEcCCCCeEEEEecCCCCC---CCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 229 EWMPSGANIAAVYDRKSEN---KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~---~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|||||+.||..+.....+ ....|.+.+..|-.... |... ......+|||||+.|+.....+....+.+.++.
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~--LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR--LTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE--CCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 8999999999887643211 12467777755433222 2211 223368999999999998776533234444443
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.17 E-value=6.6e-10 Score=127.54 Aligned_cols=136 Identities=23% Similarity=0.362 Sum_probs=101.9
Q ss_pred CCCEEEEEEccCCCEE-EEEECCCcEEEEECC---------------CCeEEE---e-----------eeecCcEEEEEE
Q 000992 75 GDSITAFDYLMEKEAL-IVGTSSGLLLLHSVD---------------GNATEV---V-----------GRVEGGVRFISP 124 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~L-a~as~dG~I~lw~~~---------------~~~~e~---v-----------g~~~~~I~~~aw 124 (1196)
...|++|.|.|.++.+ ..+-.+|...+||.. +....+ . ..-+++|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4689999999977544 456789999999652 111110 0 112468999999
Q ss_pred CCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 125 SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 125 SPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
||||+.||++|.||.++|++ |+.. .-+. . ++.--++..+++|||||+|+| +++ +|-.|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~--fdt~--eLlg-~----------mkSYFGGLLCvcWSPDGKyIv-tGG------EDDLV 356 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFD--FDTQ--ELLG-V----------MKSYFGGLLCVCWSPDGKYIV-TGG------EDDLV 356 (636)
T ss_pred cCCCceEEEEecCceEEEee--ccHH--HHHH-H----------HHhhccceEEEEEcCCccEEE-ecC------CcceE
Confidence 99999999999999998864 3321 1110 0 111125678999999999999 676 56799
Q ss_pred EEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 205 KVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.||+..+++++.-.++|..||..++|-|
T Consensus 357 tVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 TVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999998
No 216
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.17 E-value=2.2e-09 Score=125.44 Aligned_cols=258 Identities=16% Similarity=0.096 Sum_probs=159.2
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccc-cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
...+-+....+||.+.+++.|.+.|.. ....+ +.+. |+. +....+.|.++.|-|-...|++++.|.+|+.|
T Consensus 56 sFs~~~n~eHiLavadE~G~i~l~dt~--~~~fr-----~ee~~lk~-~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 56 SFSAAPNKEHILAVADEDGGIILFDTK--SIVFR-----LEERQLKK-PLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred cccCCCCccceEEEecCCCceeeecch--hhhcc-----hhhhhhcc-cccccceeEeeccCCCceeEEEccCCceeeee
Confidence 334445567889999999999999873 22211 0000 221 12224689999999966688999999999999
Q ss_pred ECCCCeEE----EeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCce---eeeeeccccc-C-c--cccc-----
Q 000992 103 SVDGNATE----VVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDL---LYENPLEELA-E-G--FDVH----- 165 (1196)
Q Consensus 103 ~~~~~~~e----~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~---~~~~~l~~~~-~-~--~~Vs----- 165 (1196)
|+.+.++. .+| |.+.|.+++|.|+.. .+++|+.||.|.||+..-+. ..+....... + + .+..
T Consensus 128 dvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 99986653 456 589999999999865 56778889999999632111 1111000000 0 0 1111
Q ss_pred cCccccCCCCeEE---EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-----------CCceeEEEEc
Q 000992 166 EPELSSSFSFKSP---ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-----------AFMGAVLEWM 231 (1196)
Q Consensus 166 ~tqf~~~~~~v~~---isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-----------~~~v~slaws 231 (1196)
-..++.+...+.+ +-+.-|-..|| +++. .|++|||||..........++. ...+.++.--
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tla-Saga-----~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLA-SAGA-----ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceee-eccC-----CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 1112234444444 77778999999 4552 4799999998554333332221 1123556666
Q ss_pred CCCCeE-EEEecCCCCCCCCeEEEEeCCCeeEEE-EEeccCC--CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 232 PSGANI-AAVYDRKSENKCPSIVFYERNGLERSS-FDINEQI--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 232 PdG~~I-As~s~d~~~~~~~~V~~~e~nGl~~~~-f~l~~~~--~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
..|.++ |++. | ..|-+|+.-++..+- +...+.. ...| .=.-||||..|++++.|. ...+|.+++.
T Consensus 281 ssGt~L~AsCt-D------~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~---~ayiw~vs~~ 349 (720)
T KOG0321|consen 281 SSGTYLFASCT-D------NSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDE---QAYIWVVSSP 349 (720)
T ss_pred CCCCeEEEEec-C------CcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCc---ceeeeeecCc
Confidence 667754 6665 4 359999865543321 1111111 1112 234799999999999999 7999998874
No 217
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.1e-07 Score=106.09 Aligned_cols=306 Identities=17% Similarity=0.145 Sum_probs=183.6
Q ss_pred EEEEEeC----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC---CcEEEE--EC
Q 000992 34 RLFFASS----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS---GLLLLH--SV 104 (1196)
Q Consensus 34 ~l~~~s~----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d---G~I~lw--~~ 104 (1196)
.+|+++- +.+|+.|++ .++.++..... +... .+.++-++|+|+++.|-++-.+ |.|.-| |.
T Consensus 4 ~~YiGtyT~~~s~gI~v~~l--d~~~g~l~~~~----~v~~----~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~ 73 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNL--DTKTGELSLLQ----LVAE----LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP 73 (346)
T ss_pred EEEEeeecccCCCceEEEEE--eCcccccchhh----hccc----cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC
Confidence 4677743 557999999 55544322211 1111 3578999999999999877655 667664 44
Q ss_pred CCCeEEEeeee---cCcEEEEEECCCCCEEEEEeC-CceEEEEecc--Cceeee--eecccccCccccccCccccCCCCe
Q 000992 105 DGNATEVVGRV---EGGVRFISPSPDGDLLGVTTG-FGQILVMTHD--WDLLYE--NPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 105 ~~~~~e~vg~~---~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~--~d~~~~--~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
+.|++..++.. ..+-.-++.++||+.|.++.- .|.|.+.-.. +.+..- ...++.. + ..+.|-++| +
T Consensus 74 ~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-~--p~~rQ~~~h---~ 147 (346)
T COG2706 74 DDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-G--PHERQESPH---V 147 (346)
T ss_pred CCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC-C--CCccccCCc---c
Confidence 54676644432 123378999999999999973 4566554221 111110 0011100 0 012222222 4
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
-..-+.|||+|++ +-.. +.-.|.+|+.++|.+...- .+..|. +.|+|+|+|++.-..... ..+|
T Consensus 148 H~a~~tP~~~~l~-v~DL-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~aY~v~EL-----~stV 215 (346)
T COG2706 148 HSANFTPDGRYLV-VPDL-----GTDRIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKYAYLVNEL-----NSTV 215 (346)
T ss_pred ceeeeCCCCCEEE-Eeec-----CCceEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcEEEEEecc-----CCEE
Confidence 6788999999998 4443 2346889999899877643 333444 899999999998888776 3589
Q ss_pred EEEeCCCeeEEEEE-------ecc--CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec--CC
Q 000992 253 VFYERNGLERSSFD-------INE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RD 321 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~-------l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~ 321 (1196)
.+|+-|+. .++|. ++. ++..+.-+|..||||++|-+.-.. .+.|-++.+....-.|.-.-..+. ..
T Consensus 216 ~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg--~dsI~~f~V~~~~g~L~~~~~~~teg~~ 292 (346)
T COG2706 216 DVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG--HDSIAVFSVDPDGGKLELVGITPTEGQF 292 (346)
T ss_pred EEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC--CCeEEEEEEcCCCCEEEEEEEeccCCcC
Confidence 99987764 34432 221 234578899999999999876443 346777777643211111101111 11
Q ss_pred cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc-cCCCCCcee
Q 000992 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-SLMPPPMYL 385 (1196)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~-~~vpppm~~ 385 (1196)
+..+.++|.+.. |.+..++ +|.-.+..+|..+=+|+.+.. ..+|.|+|.
T Consensus 293 PR~F~i~~~g~~-Liaa~q~--------------sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv 342 (346)
T COG2706 293 PRDFNINPSGRF-LIAANQK--------------SDNITVFERDKETGRLTLLGRYAVVPEPVCV 342 (346)
T ss_pred CccceeCCCCCE-EEEEccC--------------CCcEEEEEEcCCCceEEecccccCCCCcEEE
Confidence 256667776655 3333332 233455667777777776654 677888875
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.16 E-value=5.5e-08 Score=106.28 Aligned_cols=239 Identities=11% Similarity=0.068 Sum_probs=150.5
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC-----
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG----- 97 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG----- 97 (1196)
....+|+-|..-..++.+++ ...++.+-+.+..+-+- .+. +-.++-| +--.+.||.++..+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~--~~~---------G~~~veM--LfR~N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF--IDG---------GFKIVEM--LFRSNYLALVGGGSRPKYP 73 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc--ccC---------chhhhhH--hhhhceEEEecCCCCCCCC
Confidence 34477888777777777766 44444421333221000 000 1122222 33456777665433
Q ss_pred --cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.|+|||-.-.++-+.-.....|.++.+++| .|+++.. ++|.+|+-.-++..-..+.+. ....+
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~------------~NPkG 138 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETR------------SNPKG 138 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecc------------cCCCc
Confidence 699999443332222235788999999988 6666665 478898743233211111111 11234
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE--EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
.++++=.-+-.+|| .-+. .-+.|+|-|...-+. -..-..|++.+.+++.+-+|.+||++|.+++ -|+
T Consensus 139 lC~~~~~~~k~~La-fPg~-----k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT-----LIR 207 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLA-FPGF-----KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT-----LIR 207 (346)
T ss_pred eEeecCCCCceEEE-cCCC-----ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE-----EEE
Confidence 56666555666777 4443 347899987733222 2455779999999999999999999998754 688
Q ss_pred EEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 254 FYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 254 ~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|+ .+|....||. ++.....|.+|+||||++.||+++..+ ||.++.+.
T Consensus 208 IFdt~~g~~l~E~R-RG~d~A~iy~iaFSp~~s~LavsSdKg---TlHiF~l~ 256 (346)
T KOG2111|consen 208 IFDTEDGTLLQELR-RGVDRADIYCIAFSPNSSWLAVSSDKG---TLHIFSLR 256 (346)
T ss_pred EEEcCCCcEeeeee-cCCchheEEEEEeCCCccEEEEEcCCC---eEEEEEee
Confidence 998 5787777653 233456799999999999999999998 99999875
No 219
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.16 E-value=2.8e-09 Score=120.63 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=150.5
Q ss_pred CCCEEEEEEccCCC--EEEEEECCCcEEEEECCCCe-----EEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEecc
Q 000992 75 GDSITAFDYLMEKE--ALIVGTSSGLLLLHSVDGNA-----TEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHD 146 (1196)
Q Consensus 75 ~~~v~~v~~spd~~--~La~as~dG~I~lw~~~~~~-----~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~ 146 (1196)
..+|.+++|+|--. .+|+|...|+|-+||..+.+ +.....|.+.|.++.|||-. ..+.+.|-||+|++++-.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 46899999999764 77888899999999996421 22333467889999999975 457777899999987533
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE-EEEeccCCCce
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMG 225 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~e~~~~~v 225 (1196)
... .+.-+...++. ....+..|+.+.+.+. .+. .=+.+-+||+.++.. ....+-|..-|
T Consensus 266 ~~i-~e~v~s~~~d~------------~~fs~~d~~~e~~~vl-~~~------~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 266 GNI-SEEVLSLDTDN------------IWFSSLDFSAESRSVL-FGD------NVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred chh-hHHHhhcCccc------------eeeeeccccCCCccEE-Eee------cccceEEEEeecCCccchhhhhhhccc
Confidence 221 11111111111 1335566666666555 232 124789999876543 33444566789
Q ss_pred eEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEE-E-EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEE
Q 000992 226 AVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERS-S-FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 226 ~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~-~-f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW 302 (1196)
.+++++|--. +||+++-| +++++||.--++-. + |.-..+|.-.|.+..|||+|-.|++.+.|. .|+||
T Consensus 326 ~sv~~NP~~p~~laT~s~D------~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~---~IRv~ 396 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLD------QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN---EIRVF 396 (498)
T ss_pred ceeecCCCCchheeecccC------cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC---ceEEe
Confidence 9999999764 78999886 46999994322211 1 111134556799999999998899999998 89999
Q ss_pred EecCC-EEE-EEEEEEEecCC-----cEEEEEccCCCceEEEEe
Q 000992 303 FFSNN-HWY-LKYEIRYLRRD-----GIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 303 ~~~n~-~wy-lkq~l~~~~~~-----~~~v~Wsp~~~~~L~~~~ 339 (1196)
+.+-. .|. .+.+|.-.... +....|+|+... +.++.
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~l-i~vg~ 439 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNL-IVVGR 439 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhheeCCCccE-EEEec
Confidence 98510 111 12233321111 144679996653 44443
No 220
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.16 E-value=5.3e-10 Score=121.83 Aligned_cols=246 Identities=12% Similarity=0.115 Sum_probs=158.1
Q ss_pred eeecC-CCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCC-CEEEEEECCCcEEEEE
Q 000992 27 ALDIE-QNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEK-EALIVGTSSGLLLLHS 103 (1196)
Q Consensus 27 ~~d~~-~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~-~~La~as~dG~I~lw~ 103 (1196)
++|.. ++-+..+.. -+.|+..|+ .+++.. ..+.+| ++.|+.|.+.|+. +.|.++|.|..|+|||
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~--~~~~~~-------~~~~gh----G~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDV--VSGQCS-------KNYRGH----GGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEec--chhhhc-------cceecc----CccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 45555 355555554 445667777 343321 115666 6789999999987 6778999999999999
Q ss_pred CCCCeEE-Eee---eecCcEEEEEECCCCCEEEEEeCCceEEEEecc---Cceeeeee--ccccc-Cccccc-cCccc--
Q 000992 104 VDGNATE-VVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD---WDLLYENP--LEELA-EGFDVH-EPELS-- 170 (1196)
Q Consensus 104 ~~~~~~e-~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~---~d~~~~~~--l~~~~-~~~~Vs-~tqf~-- 170 (1196)
.++..+- +.| .|.+.|.++.||+||..+|+++.|.++++|... +...-|.. ..+.. .....+ .++|.
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 9998764 443 467899999999999999999999999999632 21111111 11111 111111 12222
Q ss_pred ----cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE----------------eccCCCcee--EE
Q 000992 171 ----SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS----------------SELKAFMGA--VL 228 (1196)
Q Consensus 171 ----~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~----------------~e~~~~~v~--sl 228 (1196)
-|.+.|-++.|-+ .|+. +-| .++.|-.|-+ |++... ++-....++ -.
T Consensus 245 st~diHrnyVDCvrw~g--d~il-Sks------cenaI~~w~p--gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWFG--DFIL-SKS------CENAIVCWKP--GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccccchHHHHHHHh--hhee-ecc------cCceEEEEec--chhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 3667788899987 4555 222 2468888977 222111 111112233 44
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|.|-+++||.|.. .++|.+||.. ...+..-++. ......|...+||-||.+|...++|+ +|.-|+.-
T Consensus 314 ~~d~~~~~la~gnq------~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~---~Vwrwdrv 383 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQ------SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG---TVWRWDRV 383 (385)
T ss_pred eecHHHHHHhhccC------CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC---cEEEEEee
Confidence 67788999998865 3579999953 2222211222 11235699999999999999999999 89888853
No 221
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.15 E-value=4.7e-09 Score=112.66 Aligned_cols=201 Identities=14% Similarity=0.114 Sum_probs=136.1
Q ss_pred CCCEEEEEEccCC-CEEEEEECC-------CcEEEEECCC-------CeEEEeeee----cCcEEEEEECCCCCEEEEEe
Q 000992 75 GDSITAFDYLMEK-EALIVGTSS-------GLLLLHSVDG-------NATEVVGRV----EGGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 75 ~~~v~~v~~spd~-~~La~as~d-------G~I~lw~~~~-------~~~e~vg~~----~~~I~~~awSPDg~~LA~~s 135 (1196)
.+.|..++-+|-. +.|++...+ -.+.||.... ..+|++.+. -+.|.|+.|-|++..||+..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 4789999999954 566666542 1256798743 124544433 36799999999999999998
Q ss_pred CCceEEEEeccCce--eeeeecccccCccccccCccccCCCCeEEEEEcc--CCceEEEeeccccccCCCCEEEEEECCC
Q 000992 136 GFGQILVMTHDWDL--LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 136 ~d~tV~l~~~~~d~--~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
|+.|.+|+.+-.+ ..+....... ++.....+=+||| ||..+| +. ++++++.||..+
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss~s~-----------e~~~~ftsg~WspHHdgnqv~-tt-------~d~tl~~~D~RT 202 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSSESA-----------EMRHSFTSGAWSPHHDGNQVA-TT-------SDSTLQFWDLRT 202 (370)
T ss_pred -cCceEEEEcccCcchheeecccccc-----------cccceecccccCCCCccceEE-Ee-------CCCcEEEEEccc
Confidence 6789999854222 1222211111 1223457788999 999999 43 369999999876
Q ss_pred CcEEEEe-ccCCCceeEEEEcCCCCe-EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeE
Q 000992 212 GTLQASS-ELKAFMGAVLEWMPSGAN-IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLA 288 (1196)
Q Consensus 212 G~l~~~~-e~~~~~v~slawsPdG~~-IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LA 288 (1196)
-...... ..|...+.++.|+|+-+. ||++++| ..|+||+..-..--.+.++. +..+|+++.|+|--. ++.
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDd------gyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDD------GYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCC------ccEEEEeccCCCccccccCC-CceEEEEEEecCccceEEE
Confidence 5554444 457778999999999875 5666665 46999994322222233443 467999999999755 556
Q ss_pred EEEccCCcceEEEEEec
Q 000992 289 AVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~ 305 (1196)
++++|. .|-||...
T Consensus 276 s~~SDs---~V~Lsca~ 289 (370)
T KOG1007|consen 276 SGGSDS---AVNLSCAS 289 (370)
T ss_pred ecCCCc---eeEEEecc
Confidence 677777 79999865
No 222
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.4e-09 Score=121.61 Aligned_cols=218 Identities=12% Similarity=0.041 Sum_probs=155.9
Q ss_pred cCcccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 17 QSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 17 ~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
-.|| .+.+++-+++|..|+.++..++||.|.+ .++.. .++ +..| -..|+.+.|+-||..|.+|+.|
T Consensus 79 v~Pg-~v~al~s~n~G~~l~ag~i~g~lYlWel--ssG~L-L~v------~~aH----YQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 79 VLPG-PVHALASSNLGYFLLAGTISGNLYLWEL--SSGIL-LNV------LSAH----YQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred cccc-ceeeeecCCCceEEEeecccCcEEEEEe--ccccH-HHH------HHhh----ccceeEEEEeCCCcEEEecCCC
Confidence 3456 7899999999999988888999999999 67765 222 3334 2579999999999999999999
Q ss_pred CcEEEEECCC----------CeEEEeeeecCcEEEEEECCCC--CEEEEEeCCceEEEEecc-CceeeeeecccccCccc
Q 000992 97 GLLLLHSVDG----------NATEVVGRVEGGVRFISPSPDG--DLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFD 163 (1196)
Q Consensus 97 G~I~lw~~~~----------~~~e~vg~~~~~I~~~awSPDg--~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~ 163 (1196)
|.|.+|.+.. ..+....+|.-.|+.+...+-| -.|.++|.|.++++|+.. +..+..+.+.
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------- 217 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------- 217 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-------
Confidence 9999998631 2234667788899998887764 579999999999998743 3333333322
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEE-----------------EEEECCCCcEEEEeccCCC--c
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL-----------------KVWERDSGTLQASSELKAF--M 224 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i-----------------rVWd~~~G~l~~~~e~~~~--~ 224 (1196)
..+.+++-.|-+..+- +|+. ++.| |.++. +|.....+.+|.+ .
T Consensus 218 ----------~si~av~lDpae~~~y-iGt~------~G~I~~~~~~~~~~~~~~v~~k~~~~-~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 218 ----------SSIKAVALDPAERVVY-IGTE------EGKIFQNLLFKLSGQSAGVNQKGRHE-ENTQINVLVGHENESA 279 (476)
T ss_pred ----------CcceeEEEcccccEEE-ecCC------cceEEeeehhcCCccccccccccccc-ccceeeeeccccCCcc
Confidence 2346666666665544 4542 2333 33344 5566667778888 8
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEccC
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCM 283 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpD 283 (1196)
|.+++.|-||.+++||+.| ..|.+||..-.+ .++ .+.-+.|..+.++|=
T Consensus 280 ITcLais~DgtlLlSGd~d------g~VcvWdi~S~Q----~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDED------GKVCVWDIYSKQ----CIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeEEEEecCccEEEeeCCC------CCEEEEecchHH----HHHHHhhhccccceeEeecc
Confidence 9999999999999999886 469999964322 122 112356778877664
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.14 E-value=4.9e-08 Score=114.92 Aligned_cols=324 Identities=15% Similarity=0.132 Sum_probs=169.9
Q ss_pred CEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-
Q 000992 33 NRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE- 110 (1196)
Q Consensus 33 ~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e- 110 (1196)
+.+|++ .+++.+-.+|. .+++. +.+++.+ ++....+.|+|||+.+.+++.||.|.++|+.++++-
T Consensus 6 ~l~~V~~~~~~~v~viD~--~t~~~---~~~i~~~--------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG--ATNKV---VARIPTG--------GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEET--TT-SE---EEEEE-S--------TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE
T ss_pred cEEEEEecCCCEEEEEEC--CCCeE---EEEEcCC--------CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE
Confidence 445554 34667777887 55443 2222221 122456789999999999999999999999987642
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.+. ....-.++++||||++|+++. .+++|.+++ +..+++..++....... ....++..|.-+|++..|
T Consensus 73 ~i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~---------~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 73 TIK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD---------GPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT---------TS---EEEEEE-SSSSEE
T ss_pred EEe-cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc---------ccCCCceeEEecCCCCEE
Confidence 332 134568899999999999885 578999987 67788777665433200 012456788889999977
Q ss_pred EEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFD 266 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~ 266 (1196)
+ ++-- +.+.|-+-|..+.. +..+........+...|.|+|+++..+... ...|..++.. +.......
T Consensus 143 V-v~lk-----d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-----sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 143 V-VNLK-----DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-----SNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp E-EEET-----TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-----GTEEEEEETTTTEEEEEEE
T ss_pred E-EEEc-----cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-----cceeEEEeeccceEEEEee
Confidence 7 5542 23566666754433 333333344455789999999987665443 2467677632 32222111
Q ss_pred e-ccCCCCcEE-------EEEEc--cCCCee-EEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceE
Q 000992 267 I-NEQIDSTVE-------LLKWN--CMSDLL-AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 267 l-~~~~~~~V~-------~laWS--pDg~~L-As~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1196)
. +.++...+. ..-|. -.+... ...+.+. +.+|+..+ |...+++.... .+..+.-||++++ +
T Consensus 212 ~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~----v~v~d~~~--wkvv~~I~~~G-~glFi~thP~s~~-v 283 (369)
T PF02239_consen 212 TGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP----VSVHDDYA--WKVVKTIPTQG-GGLFIKTHPDSRY-V 283 (369)
T ss_dssp -SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T----TT-STTTB--TSEEEEEE-SS-SS--EE--TT-SE-E
T ss_pred ccccccccccccccCCCcceEEeeccccceecccccCCc----cccchhhc--CeEEEEEECCC-CcceeecCCCCcc-E
Confidence 1 111111111 22243 334443 3333343 66677665 44556666532 3378889999874 3
Q ss_pred EEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec--CCCCEEEEEEecCCCCCEEEEEEC
Q 000992 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK--FPTAVTEMAFYSKSSKNCLAAILS 413 (1196)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~--~~~~V~~Vafspdg~~~~lAs~~~ 413 (1196)
.+-.. ...+...+.++|-.++++. .++. ....+..+.|++||. ....|...
T Consensus 284 wvd~~-------------~~~~~~~v~viD~~tl~~~-------------~~i~~~~~~~~~h~ef~~dG~-~v~vS~~~ 336 (369)
T PF02239_consen 284 WVDTF-------------LNPDADTVQVIDKKTLKVV-------------KTITPGPGKRVVHMEFNPDGK-EVWVSVWD 336 (369)
T ss_dssp EEE-T-------------T-SSHT-EEEEECCGTEEE-------------E-HHHHHT--EEEEEE-TTSS-EEEEEEE-
T ss_pred Eeecc-------------CCCCCceEEEEECcCccee-------------EEEeccCCCcEeccEECCCCC-EEEEEEec
Confidence 22211 0112456778887765432 1121 112488999999993 33445544
Q ss_pred CC-cEEEEeCCCC
Q 000992 414 DG-CLCVVDLPAP 425 (1196)
Q Consensus 414 dg-~v~lw~~~~~ 425 (1196)
++ .|.+||..+.
T Consensus 337 ~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 337 GNGAIVVYDAKTL 349 (369)
T ss_dssp -TTEEEEEETTTT
T ss_pred CCCEEEEEECCCc
Confidence 44 8999998864
No 224
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.13 E-value=1.1e-08 Score=110.18 Aligned_cols=290 Identities=14% Similarity=0.161 Sum_probs=183.0
Q ss_pred CEEEEEEcc--C-CCEEEEEEC----CCcEEEEEC--CCCeEEEee--eecCcEEEEEECCCCC-----EEEEEeCCceE
Q 000992 77 SITAFDYLM--E-KEALIVGTS----SGLLLLHSV--DGNATEVVG--RVEGGVRFISPSPDGD-----LLGVTTGFGQI 140 (1196)
Q Consensus 77 ~v~~v~~sp--d-~~~La~as~----dG~I~lw~~--~~~~~e~vg--~~~~~I~~~awSPDg~-----~LA~~s~d~tV 140 (1196)
.+.++.||. + +..||+||- ...|.|..+ ++++..... .|.-+++.+.|.||.+ +||+.+ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 467777873 2 357888763 345666444 344432222 3567899999999984 566543 379
Q ss_pred EEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcE---EE
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTL---QA 216 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l---~~ 216 (1196)
++|....+- ........- .... .++ +...+++..|.- |-+++. ++|+| .|--|||.++|.. ..
T Consensus 124 RlWri~~ee-~~~~~~~~L-~~~k-ns~---~~aPlTSFDWne~dp~~ig-tSSiD------TTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 124 RLWRIGDEE-SRVELQSVL-NNNK-NSE---FCAPLTSFDWNEVDPNLIG-TSSID------TTCTIWDIETGVSGTVKT 190 (364)
T ss_pred EEEeccCcC-Cceehhhhh-ccCc-ccc---cCCcccccccccCCcceeE-eeccc------CeEEEEEEeeccccceee
Confidence 998644321 111111000 0000 111 234668889975 667787 67764 6888999987733 33
Q ss_pred EeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEcc-CCCeeEEEEcc
Q 000992 217 SSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNC-MSDLLAAVVRF 293 (1196)
Q Consensus 217 ~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSp-Dg~~LAs~~~d 293 (1196)
.+-.|+..|..|+|.-.|. .+||++.|+ .|++|+...+.|.......+. ......|+||+ |=.++|+-..|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDG------SvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d 264 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADG------SVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD 264 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCC------cEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence 3557999999999999764 789999875 599999887888866555443 35688999998 45688887766
Q ss_pred CCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee
Q 000992 294 EEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
. ..|+|-|+.... .-..+++.|...+..++|.|.....|..+. |+...++|+
T Consensus 265 S--~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaG-------------------------DD~qaliWD 316 (364)
T KOG0290|consen 265 S--NKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAG-------------------------DDCQALIWD 316 (364)
T ss_pred C--ceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecC-------------------------CcceEEEEe
Confidence 5 258899987532 112345555545577999998876433322 444555555
Q ss_pred cccc---CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000992 374 LSLS---LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1196)
Q Consensus 374 l~~~---~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~l 419 (1196)
+... ++..|+..++ ..+.|+.+.|+|... ..+|++.. +++.+
T Consensus 317 l~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~-Dwiai~~~-kklei 361 (364)
T KOG0290|consen 317 LQQMPRENGEDPILAYT--AGGEVNQIQWSSSQP-DWIAICFG-KKLEI 361 (364)
T ss_pred cccccccCCCCchhhhh--ccceeeeeeecccCC-CEEEEEec-CeeeE
Confidence 5422 3344665555 566799999997653 77888744 34444
No 225
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.1e-08 Score=122.43 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=132.6
Q ss_pred ceeEEeeecCCCE-EEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC-C
Q 000992 22 ILQFSALDIEQNR-LFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS-S 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~-l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~-d 96 (1196)
......|.+|++. +|..+. ...|+.+|+ .+++.. .+ ... .+.+....|||||+.|+.... +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl--~tg~~~-~l-------t~~----~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNL--YTGKKE-KI-------ASS----QGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEEC--CCCcEE-EE-------ecC----CCcEEeeEECCCCCEEEEEEccC
Confidence 4567899999985 776543 357999998 555431 12 111 234667789999998886543 3
Q ss_pred --CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC-c--eEEEEeccCceeeeeecccccCccccccCcccc
Q 000992 97 --GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF-G--QILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 97 --G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d-~--tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
++|.+++..++....+..+.+......|||||+.|+..+.. + .|.+++...... .. ++ +.+
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~r---------lt---~~g 320 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQ---------VV---FHG 320 (419)
T ss_pred CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--Ee---------Cc---cCC
Confidence 46888898888765444333334567899999999999853 2 344443221111 01 10 001
Q ss_pred CCCCeEEEEEccCCceEEEeecccccc--CCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSS--KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~--~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
. ...+|||||+++|.++.....+ .+...|.+.|.++|+....... +.....+|||||+.|+..+.... .
T Consensus 321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~---~ 391 (419)
T PRK04043 321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN---Q 391 (419)
T ss_pred C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--CCcCCeEECCCCCEEEEEEccCC---c
Confidence 1 2248999999999544321000 0114678889877776554442 33457899999999998876532 4
Q ss_pred CeEEEEeCCCeeEEEEEeccCCCCcEEEEEE
Q 000992 250 PSIVFYERNGLERSSFDINEQIDSTVELLKW 280 (1196)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW 280 (1196)
..+...+.+|..... ++.. .+.|.+-+|
T Consensus 392 ~~L~~~~l~g~~~~~--l~~~-~g~~~~p~W 419 (419)
T PRK04043 392 SALGIIRLNYNKSFL--FPLK-VGKIQSIDW 419 (419)
T ss_pred EEEEEEecCCCeeEE--eecC-CCccCCCCC
Confidence 457777888854433 3321 234555444
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.09 E-value=1.4e-07 Score=111.14 Aligned_cols=316 Identities=12% Similarity=0.036 Sum_probs=169.0
Q ss_pred EEEECCCcEEEEECCCCeE-EEeeeecCcE-EEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccC
Q 000992 91 IVGTSSGLLLLHSVDGNAT-EVVGRVEGGV-RFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~~~~-e~vg~~~~~I-~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
++-..+|.|.++|..+.++ ..+... +.+ ..+.+||||+++.+++.||.|.+++ ...+.+.++.....
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--------- 79 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN--------- 79 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------
Confidence 3445689999999988654 333321 233 4477999999999999999998886 44556666554332
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-------CCCceeEEEEcCCCCeEEEE
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------KAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-------~~~~v~slawsPdG~~IAs~ 240 (1196)
-..+++|+||+|++ ++.. ..+++.|+|.++.+.+++... ....+..|.-+|.+...+..
T Consensus 80 --------~~~i~~s~DG~~~~-v~n~-----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 80 --------PRGIAVSPDGKYVY-VANY-----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp --------EEEEEE--TTTEEE-EEEE-----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred --------cceEEEcCCCCEEE-EEec-----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 27899999999999 6654 357999999889988876532 12345678889998865555
Q ss_pred ecCCCCCCCCeEEEEeCCCe---eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 241 YDRKSENKCPSIVFYERNGL---ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl---~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
-.+ ...|.+-+-... .... +. .........|+|||+++.++.... +.|-+++..+..- ...+..
T Consensus 146 lkd-----~~~I~vVdy~d~~~~~~~~--i~--~g~~~~D~~~dpdgry~~va~~~s--n~i~viD~~~~k~--v~~i~~ 212 (369)
T PF02239_consen 146 LKD-----TGEIWVVDYSDPKNLKVTT--IK--VGRFPHDGGFDPDGRYFLVAANGS--NKIAVIDTKTGKL--VALIDT 212 (369)
T ss_dssp ETT-----TTEEEEEETTTSSCEEEEE--EE----TTEEEEEE-TTSSEEEEEEGGG--TEEEEEETTTTEE--EEEEE-
T ss_pred Ecc-----CCeEEEEEeccccccceee--ec--ccccccccccCcccceeeeccccc--ceeEEEeeccceE--EEEeec
Confidence 554 246655552221 1111 11 123466899999999887765443 2788999887542 112221
Q ss_pred ecC---CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCE
Q 000992 318 LRR---DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 318 ~~~---~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V 394 (1196)
... .+..-.=||.. ...|.+.......+..+....+.+++...|-+ .+++...+.-
T Consensus 213 g~~p~~~~~~~~php~~----------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-----v~~I~~~G~g 271 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGF----------------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-----VKTIPTQGGG 271 (369)
T ss_dssp SSSBEETTEEEEEETTT----------------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE-----EEEEE-SSSS
T ss_pred cccccccccccccCCCc----------------ceEEeeccccceecccccCCccccchhhcCeE-----EEEEECCCCc
Confidence 100 01111122322 12344443333333444444444444443322 2344444444
Q ss_pred EEEEEecCCCCCEEEEE----ECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCC
Q 000992 395 TEMAFYSKSSKNCLAAI----LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR 470 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~----~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~ 470 (1196)
.-+.-+|++ ..+.+. ..+++|.++|..+.... .++.......+.|+.|++||+.+-++..+..
T Consensus 272 lFi~thP~s--~~vwvd~~~~~~~~~v~viD~~tl~~~-----------~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 272 LFIKTHPDS--RYVWVDTFLNPDADTVQVIDKKTLKVV-----------KTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp --EE--TT---SEEEEE-TT-SSHT-EEEEECCGTEEE-----------E-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred ceeecCCCC--ccEEeeccCCCCCceEEEEECcCccee-----------EEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 667778999 788877 34489999998863221 1111111124899999999987766655443
Q ss_pred CceEEEE
Q 000992 471 HSNYFRG 477 (1196)
Q Consensus 471 ~~~~~~~ 477 (1196)
..+.+++
T Consensus 339 ~~i~v~D 345 (369)
T PF02239_consen 339 GAIVVYD 345 (369)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 4555554
No 227
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.07 E-value=3.5e-08 Score=119.69 Aligned_cols=269 Identities=17% Similarity=0.131 Sum_probs=165.5
Q ss_pred CcEEEEECCCC-eEEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc--Cce-eeeeecccccCccccccCcccc
Q 000992 97 GLLLLHSVDGN-ATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD--WDL-LYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 97 G~I~lw~~~~~-~~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~--~d~-~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
+.+.+|+.... ..+.+=.....|.|+.|+|. ..+||.|+.+|+|.+|+.. .++ ....+. +-+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~------------~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA------------LEVS 289 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc------------cccc
Confidence 57889998764 44544445788999999996 5677777889999998621 111 111111 1225
Q ss_pred CCCCeEEEEEccCCce--EEEeeccccccCCCCEEEEEECCC------CcEEEEec------cCCCceeEEEEcCCC-Ce
Q 000992 172 SFSFKSPISWRGDGKY--FATLSEFCNSSKLHKRLKVWERDS------GTLQASSE------LKAFMGAVLEWMPSG-AN 236 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~--lAsvss~d~~~~~d~~irVWd~~~------G~l~~~~e------~~~~~v~slawsPdG-~~ 236 (1196)
|.+.++.+.|-.+-.- |+ +++ .|+.|..|+.+- +.+..... .....+.+++|.|.- +.
T Consensus 290 h~~~v~~vvW~~~~~~~~f~-s~s------sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFF-SLS------SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred CCcCeEEEEEeccCCCCceE-EEe------cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 7788899999654433 66 343 268999998721 11111111 111235788888854 33
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCeeEEE---EEe---ccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERNGLERSS---FDI---NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW 309 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~nGl~~~~---f~l---~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~w 309 (1196)
+..|++. +.|---.|.|.+.+. |.. ...+.+.|..+.|||=+..+...+.|- +|+||... +..-
T Consensus 363 FiVGTe~------G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW---~vriWs~~~~~~P 433 (555)
T KOG1587|consen 363 FIVGTEE------GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW---TVRIWSEDVIASP 433 (555)
T ss_pred EEEEcCC------cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc---eeEeccccCCCCc
Confidence 4445543 234444666666553 111 122457899999999998766666677 89999987 4321
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
.+ .+..+.+..+.++|||..+..+++...+|.+. +|+|.. ...-|++...+.
T Consensus 434 l~--~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~-------------------------iWDLl~-~~~~Pv~s~~~~ 485 (555)
T KOG1587|consen 434 LL--SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD-------------------------IWDLLQ-DDEEPVLSQKVC 485 (555)
T ss_pred ch--hhhhccceeeeeEEcCcCceEEEEEcCCCcee-------------------------hhhhhc-cccCCccccccc
Confidence 00 00011112377999999998777776666554 344332 122344332222
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
....+.+.|+++| +.||+|...|++++|++..
T Consensus 486 -~~~l~~~~~s~~g--~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 486 -SPALTRVRWSPNG--KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -ccccceeecCCCC--cEEEEecCCCcEEEEEcCc
Confidence 2334678899989 8999999999999999964
No 228
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.6e-08 Score=114.07 Aligned_cols=201 Identities=19% Similarity=0.178 Sum_probs=130.5
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
-.++|++||..+| +++ .|+++|||+...-........|.+.|.++.|||||++||+.+.+ ...+|+
T Consensus 148 k~vaf~~~gs~la-tgg------~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-------~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGDGSKLA-TGG------TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-------SARVWS 213 (398)
T ss_pred eEEEEcCCCCEee-ecc------ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-------ceEEEE
Confidence 6899999999999 564 47999999932555555555678889999999999999999985 377898
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCC---CeeEEEEccCCcceEEEEEecCCEE----EEEEEEEEecCCcEEEEEcc
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMS---DLLAAVVRFEEYDSVKICFFSNNHW----YLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg---~~LAs~~~d~~~~~V~lW~~~n~~w----ylkq~l~~~~~~~~~v~Wsp 329 (1196)
.+-..+-...-+.........+.|+-|+ .++..+.. .++..|.+|++.-++| .+++-+.- .+...++.=|+
T Consensus 214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~-~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~ 291 (398)
T KOG0771|consen 214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ-FPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSD 291 (398)
T ss_pred eccCchhhhcCCcccchhhhhceecccCCCceEEEEEec-CCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcC
Confidence 6532110000111112346678899888 22222222 1233688888877666 22222211 12336777888
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEE
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lA 409 (1196)
+|.. +++++.+|.+.+++ -..+..--+ + .-.|...|+.|.|+||. +.++
T Consensus 292 dGkf-~AlGT~dGsVai~~-----------------~~~lq~~~~----v-------k~aH~~~VT~ltF~Pds--r~~~ 340 (398)
T KOG0771|consen 292 DGKF-LALGTMDGSVAIYD-----------------AKSLQRLQY----V-------KEAHLGFVTGLTFSPDS--RYLA 340 (398)
T ss_pred CCcE-EEEeccCCcEEEEE-----------------eceeeeeEe----e-------hhhheeeeeeEEEcCCc--Cccc
Confidence 8866 78888777665433 222211100 0 01277789999999999 8999
Q ss_pred EEECCCcEEEEeCCC
Q 000992 410 AILSDGCLCVVDLPA 424 (1196)
Q Consensus 410 s~~~dg~v~lw~~~~ 424 (1196)
+.+.|.+..+..+..
T Consensus 341 svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccCCceeEEEEee
Confidence 999999999887753
No 229
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.06 E-value=1.9e-08 Score=114.12 Aligned_cols=277 Identities=12% Similarity=0.096 Sum_probs=177.5
Q ss_pred ceeEEeeecCCC--EEEEEeCCCcEEEEecccccccc-cceeeccccccccccCCC-CCCEEEEEEccCC-CEEEEEECC
Q 000992 22 ILQFSALDIEQN--RLFFASSANNIYSAQLSSFQNER-ASIKTAISAEIEHIDLEP-GDSITAFDYLMEK-EALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~--~l~~~s~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~-~~La~as~d 96 (1196)
.+.+++|=|--+ .|.+++.-++|=.||+ .+++- .-.+ .. |.| ++.|.+|.|+|.. .++.+.|-|
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~--~~~~~d~d~v------~~---f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNF--GTQEKDKDGV------YL---FTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEec--CCCCCccCce------EE---eccCCccccceEecCCChhheeeeccC
Confidence 788888887654 4555566788999999 32211 0011 11 122 4679999999965 577788999
Q ss_pred CcEEEEECCCCeEEEeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 97 GLLLLHSVDGNATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
|+|++-|.++...+.+=. ...++..+.||.+...+.+++.=|..-+|+..-+. ++.. . +.-|+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~-s~~~--~-----------~~lh~ 322 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG-SEYE--N-----------LRLHK 322 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC-ccch--h-----------hhhhh
Confidence 999999999876653322 23567889999999988888877766665422111 1000 0 11234
Q ss_pred CCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCC--Cc---EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC
Q 000992 174 SFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDS--GT---LQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN 247 (1196)
Q Consensus 174 ~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~--G~---l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~ 247 (1196)
-.|.++++.|-..+ || .++ -|++.||||... ++ ++++. +|...|.+..|||+|-.|++.+.|
T Consensus 323 kKI~sv~~NP~~p~~la-T~s------~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D---- 390 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLA-TAS------LDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQD---- 390 (498)
T ss_pred cccceeecCCCCchhee-ecc------cCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccC----
Confidence 56799999998865 56 465 369999999742 22 23443 478889999999998888888875
Q ss_pred CCCeEEEEeCCC-----eeEEEEEec-cCCC---CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 248 KCPSIVFYERNG-----LERSSFDIN-EQID---STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 248 ~~~~V~~~e~nG-----l~~~~f~l~-~~~~---~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
..|++|+-.- ...+ +++ .... -....-+|.||-.+++++-.-+ .|-+++-++.+- -.++..+
T Consensus 391 --~~IRv~dss~~sa~~~p~~--~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r---~IDv~~~~~~q~--v~el~~P 461 (498)
T KOG4328|consen 391 --NEIRVFDSSCISAKDEPLG--TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR---PIDVFDGNGGQM--VCELHDP 461 (498)
T ss_pred --CceEEeecccccccCCccc--eeeccCcccccccchhheeCCCccEEEEeccCc---ceeEEcCCCCEE--eeeccCc
Confidence 4699998631 0011 111 0001 1355778999999999998877 699999887531 1222221
Q ss_pred cC-Cc-EEEEEccCCCceEEEEecCCcE
Q 000992 319 RR-DG-IRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 319 ~~-~~-~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
.. .+ ....|||-+...+.-.+..|.+
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki 489 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSSGKI 489 (498)
T ss_pred cccccccceeecccccceeccCCccceE
Confidence 11 22 4578999876433333334433
No 230
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.06 E-value=3.4e-09 Score=117.54 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=106.6
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEE--ECCCcEEEEEC
Q 000992 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVG--TSSGLLLLHSV 104 (1196)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~a--s~dG~I~lw~~ 104 (1196)
..-..+.|.++-++. ||.+|++ .++-. +| +... .| ...+.+++.++++.+||-- ...|+|.|||.
T Consensus 93 VrmNr~RLvV~Lee~-IyIydI~-~MklL----hT----I~t~--~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 93 VRMNRKRLVVCLEES-IYIYDIK-DMKLL----HT----IETT--PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred EEEccceEEEEEccc-EEEEecc-cceee----hh----hhcc--CCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 334457788887777 9999995 44432 22 1111 11 2458888888888899843 45799999999
Q ss_pred CCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEE-EEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 105 DGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 105 ~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~-l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
.+- .+.....|++.|.|++|||||.+||+||..|||+ +.+ .+++.+.|..-... . ..+.+++|
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~----~----------~~IySL~F 226 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY----P----------VSIYSLSF 226 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce----e----------eEEEEEEE
Confidence 874 3445668999999999999999999999999985 332 33444444332211 1 36799999
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCC
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
+||++||+ +++ ...||.||..++
T Consensus 227 s~ds~~L~-~sS------~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 227 SPDSQFLA-ASS------NTETVHIFKLEK 249 (391)
T ss_pred CCCCCeEE-Eec------CCCeEEEEEecc
Confidence 99999999 555 357999998733
No 231
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=6.5e-09 Score=114.15 Aligned_cols=291 Identities=11% Similarity=0.027 Sum_probs=167.7
Q ss_pred CEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFD 163 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~ 163 (1196)
..+|++.++|.|+|||..++. ++....+++.++.++|+- .+..+.+++.||+|++|+ |.......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS---- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----
Confidence 568888999999999999854 454444678888899977 467899999999999986 444333333222111
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE-EE-EeccCCCceeEEEEcCCC-CeEEEE
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QA-SSELKAFMGAVLEWMPSG-ANIAAV 240 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-~~-~~e~~~~~v~slawsPdG-~~IAs~ 240 (1196)
.....+++-.-.++.++ +++... ..+..+.+||.+.-+. +. -.+.|..-|++|.|.|+. ++++||
T Consensus 117 ---------~~~f~~ld~nck~~ii~-~GtE~~--~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ---------GTPFICLDLNCKKNIIA-CGTELT--RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ---------CCcceEeeccCcCCeEE-eccccc--cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 01223444443677888 676322 2567899999754332 33 347788899999999964 799999
Q ss_pred ecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 241 YDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
|.|+ -|-+|+.++.-..+--+. .-...+|..+.|..++ +.|-+-+... +..+|+++... .+..+.
T Consensus 185 SvDG------LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E---tf~~~ele~~~----~~~~~~ 251 (376)
T KOG1188|consen 185 SVDG------LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME---TFAIYELEDGS----EETWLE 251 (376)
T ss_pred cccc------eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC---ceeEEEccCCC----hhhccc
Confidence 9874 588898765421110000 0123469999999999 2244444454 68888876532 111111
Q ss_pred cCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcC--CEEEEeeccc---cCCCCCceeeeecCCC
Q 000992 319 RRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG--SKILVTPLSL---SLMPPPMYLFSLKFPT 392 (1196)
Q Consensus 319 ~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg--~~l~lt~l~~---~~vpppm~~~~l~~~~ 392 (1196)
.... ....|-.+.. -.+ +-...|.+.++.+++.+ ++..+-|+.. .....|....+-.|..
T Consensus 252 ~~~~~~~d~r~~~~~--dY~------------I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~e 317 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNC--DYV------------INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEE 317 (376)
T ss_pred CccchhhhHHhhhhh--hhe------------eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHH
Confidence 1000 0001110000 000 00011223333333322 2333333321 1111111111122455
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 393 ~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
-|.++.|-..+ .++-+++.||.|.+|..+
T Consensus 318 iVR~i~~~~~~--~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 318 IVRDILFDVKN--DVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred HHHHHhhhccc--ceeeccCCCceEEEEecC
Confidence 57888888777 899999999999999964
No 232
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=2.8e-09 Score=123.55 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=159.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC------Ce---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG------NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~------~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
.+.|.+++|.|-...|++++.||+|++|+++. +. +-..-.|.++|.|++.++.|+.+-+||-||+|..|+.
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 36899999999999999999999999999931 22 2356678999999999999999999999999988853
Q ss_pred cCceeeeeeccccc-CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-CC-
Q 000992 146 DWDLLYENPLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KA- 222 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~-~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~- 222 (1196)
- ....+.+ ..-.+-.+.+.||.+.++.+++|+.-..|++ .+ .|+|+|.|+. +++...++.. ..
T Consensus 374 p------~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls-cs------~DgTvr~w~~-~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 374 P------PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS-CS------SDGTVRLWEP-TEESPCTFGEPKEH 439 (577)
T ss_pred C------CCCCcccccCcchhccceeccccceeeeeecccccceee-ec------CCceEEeecc-CCcCccccCCcccc
Confidence 1 0111111 1111114557799999999999999999984 43 3799999999 4443344422 11
Q ss_pred C---ceeEEEEcCCCCeEEEEecCCC------CCCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEc
Q 000992 223 F---MGAVLEWMPSGANIAAVYDRKS------ENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 223 ~---~v~slawsPdG~~IAs~s~d~~------~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~ 292 (1196)
+ .+.-.+|.|. ++.++.... ..-..++++++-.. .+++. -..++-+.|.|.+.+..++..
T Consensus 440 g~Plsvd~~ss~~a---~~~~s~~~~~~~~~~~ev~s~~~~~~s~~-------~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPA---HSLASFRFGYTSIDDMEVVSDLLIFESSA-------SPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred CCcceEeeccchhH---hhhhhcccccccchhhhhhhheeeccccC-------CCcccccCccceEEecCCCCeeEeccc
Confidence 1 1223334443 222221100 00112344444221 11111 135888999999999999999
Q ss_pred cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
|+ .|+++|..+.. +..+...+....++++.+|.|+. |+.++.+|.+.
T Consensus 510 d~---~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~ 556 (577)
T KOG0642|consen 510 DR---SIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVR 556 (577)
T ss_pred CC---ceecccccccc--cchheeeccceecceeecCCCce-EEeecCCceee
Confidence 99 89999988764 23344444444478999999987 67777666553
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.00 E-value=4.2e-09 Score=121.10 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=88.7
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEeccccccc---ccceeecccccc--------cc-ccCCC----CCCEEEEEEc
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNE---RASIKTAISAEI--------EH-IDLEP----GDSITAFDYL 84 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~---~~~~~~~~~~~l--------~~-~~~~~----~~~v~~v~~s 84 (1196)
.++++.|-+.++.+|.++- ++.+|.+|.. .... -.+.....++.+ .. .|..+ .+.|..++||
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~-~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKE-IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeecc-ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 7899999999999998865 6678888653 1110 001111111111 00 12211 3689999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 85 MEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 85 pd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
|||+.||++|.||.++|+|-++.++. +.-+.=+|..|++|||||++||+|++|.-|.+|+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 99999999999999999999986654 3333457899999999999999999999999997
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.99 E-value=3.2e-06 Score=101.31 Aligned_cols=85 Identities=24% Similarity=0.252 Sum_probs=57.1
Q ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCH
Q 000992 1014 FCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDW 1093 (1196)
Q Consensus 1014 ~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w 1093 (1196)
...|+++-|.+||.++++|..++-+..-.+ +. +-+.+|++.-...|++.-|-.+++- +||+++.++++++.+++
T Consensus 358 L~~g~~~lAe~c~~k~~d~~~L~lLy~~~g-~~----~~L~kl~~~a~~~~~~n~af~~~~~-lgd~~~cv~lL~~~~~~ 431 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKDFSGLLLLYSSTG-DR----EKLSKLAKIAEERGDINIAFQAALL-LGDVEECVDLLIETGRL 431 (443)
T ss_dssp HHTTBHHHHHHHHHHCT-HHHHHHHHHHCT--H----HHHHHHHHHHHHTT-HHHHHHHHHH-HT-HHHHHHHHHHTT-H
T ss_pred HHcCCHHHHHHHHHhhcCccccHHHHHHhC-CH----HHHHHHHHHHHHccCHHHHHHHHHH-cCCHHHHHHHHHHcCCc
Confidence 334555555555555555555554444433 32 2344666667788999999999888 99999999999999999
Q ss_pred HHHHHHHHhcC
Q 000992 1094 EEALRVAFMHR 1104 (1196)
Q Consensus 1094 ~eA~rla~~~~ 1104 (1196)
.+|.-.|..|.
T Consensus 432 ~~A~~~A~ty~ 442 (443)
T PF04053_consen 432 PEAALFARTYG 442 (443)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHhcC
Confidence 99999888774
No 235
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.96 E-value=2.5e-06 Score=97.23 Aligned_cols=253 Identities=14% Similarity=0.150 Sum_probs=159.5
Q ss_pred CCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 000992 31 EQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN 107 (1196)
Q Consensus 31 ~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~ 107 (1196)
.++.||+.|+ -++||.+|+ ..++. +-|.--. .-..=+-+.||+.++. +..|+|.++|+++.
T Consensus 234 V~~RvYFlsD~eG~GnlYSvdl--dGkDl-----------rrHTnFt--dYY~R~~nsDGkrIvF-q~~GdIylydP~td 297 (668)
T COG4946 234 VGERVYFLSDHEGVGNLYSVDL--DGKDL-----------RRHTNFT--DYYPRNANSDGKRIVF-QNAGDIYLYDPETD 297 (668)
T ss_pred EcceEEEEecccCccceEEecc--CCchh-----------hhcCCch--hccccccCCCCcEEEE-ecCCcEEEeCCCcC
Confidence 4789999988 347999998 44442 2221000 0111123679999876 57899999999986
Q ss_pred eEEEe--e-eec---------CcEEEEE-ECC-CCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 108 ATEVV--G-RVE---------GGVRFIS-PSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 108 ~~e~v--g-~~~---------~~I~~~a-wSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
.++.+ | -.+ ....-+. ||+ +|+++|++|.. ++-+| +.|+.-. +++ ++.
T Consensus 298 ~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-kaFi~-~~~~~~~-iqv---------------~~~ 359 (668)
T COG4946 298 SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-KAFIM-RPWDGYS-IQV---------------GKK 359 (668)
T ss_pred cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-cEEEE-CCCCCee-EEc---------------CCC
Confidence 55422 2 001 1111111 444 68999999975 55566 4465422 222 344
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
.+|.-..+..|++-++ ++..|+ -.+-|+|. .|-.....++.-|.+.++.-+|||+.++.+-. +..+.
T Consensus 360 ~~VrY~r~~~~~e~~v-igt~dg-----D~l~iyd~-~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd------r~el~ 426 (668)
T COG4946 360 GGVRYRRIQVDPEGDV-IGTNDG-----DKLGIYDK-DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND------RFELW 426 (668)
T ss_pred CceEEEEEccCCcceE-EeccCC-----ceEEEEec-CCceEEEeeCCccceEEEEEcCCCcEEEEEcC------ceEEE
Confidence 5678888889999888 776431 27899999 44455556667788999999999999988765 34555
Q ss_pred EEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccC
Q 000992 254 FYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPT 330 (1196)
Q Consensus 254 ~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~ 330 (1196)
+.|. ||..+- +.....+-|....|||+|+.+|-+--++- ...|+|+|+.+.+.|-.- . +..- .+-+|+||
T Consensus 427 vididngnv~~---idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT---T-~ta~DfsPaFD~d 499 (668)
T COG4946 427 VIDIDNGNVRL---IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT---T-PTAYDFSPAFDPD 499 (668)
T ss_pred EEEecCCCeeE---ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec---C-CcccccCcccCCC
Confidence 5553 443321 11122456999999999999999876552 236999999986543211 1 1111 44578888
Q ss_pred CCceEEEE
Q 000992 331 KPLQLICW 338 (1196)
Q Consensus 331 ~~~~L~~~ 338 (1196)
+.. |..+
T Consensus 500 ~ry-LYfL 506 (668)
T COG4946 500 GRY-LYFL 506 (668)
T ss_pred CcE-EEEE
Confidence 875 4433
No 236
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=8e-09 Score=119.81 Aligned_cols=209 Identities=12% Similarity=0.117 Sum_probs=149.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEec---cc-ccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQL---SS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG 97 (1196)
-+.++++-+-.-.|+.|++++.|..|++ .. .++.. -.|-+ +++| .+.|.++.+++.++.+.+|+.||
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~-epi~t----fraH----~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV-EPILT----FRAH----EGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce-eeeEE----Eecc----cCceEEEEecCCceEEEeeccCc
Confidence 4556677777888999999999999998 21 11111 11222 4444 47899999999999999999999
Q ss_pred cEEEEECCC-------C---eE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee--ccccc-Ccc
Q 000992 98 LLLLHSVDG-------N---AT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP--LEELA-EGF 162 (1196)
Q Consensus 98 ~I~lw~~~~-------~---~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~--l~~~~-~~~ 162 (1196)
+|+.|+... . .+ . ..| |.+.||.+++|+--..|++++.||||++|... .+.+ +.... ++.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~----~~~~~~f~~~~e~g~ 441 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT----EESPCTFGEPKEHGY 441 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccC----CcCccccCCccccCC
Confidence 999996521 1 11 2 345 68899999999999999999999999887522 1111 10000 111
Q ss_pred ccc---------------------------cCccc----------cCCCCeEEEEEccCCceEEEeeccccccCCCCEEE
Q 000992 163 DVH---------------------------EPELS----------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK 205 (1196)
Q Consensus 163 ~Vs---------------------------~tqf~----------~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~ir 205 (1196)
+.+ ..+++ ...+.+..|.|.|.+-+.. .+. +++.||
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~-~~h------ed~~Ir 514 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF-TAH------EDRSIR 514 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE-ecc------cCCcee
Confidence 111 01111 1335678899999997666 342 589999
Q ss_pred EEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 206 VWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 206 VWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
++|-.+|.++.....|...+.++++-|+|-++++++.|. .|.+|..
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~------sv~l~kl 560 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG------SVRLWKL 560 (577)
T ss_pred cccccccccchheeeccceecceeecCCCceEEeecCCc------eeehhhc
Confidence 999989999888877888889999999999999999864 5888864
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.3e-07 Score=106.76 Aligned_cols=247 Identities=13% Similarity=0.117 Sum_probs=154.1
Q ss_pred CEEEEEEccCCCEEEE-----EECCC-----cEEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 77 SITAFDYLMEKEALIV-----GTSSG-----LLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~-----as~dG-----~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
.+.++.|||-|..|++ ...++ .+++|+..++.. .+.-..+.+ |+.+||+|..+.|-..+. .|.++.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~n-ev~f~~ 152 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSN-EVQFYD 152 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcc-eEEEEe
Confidence 7899999999998875 23333 466899988432 244444555 899999997776655443 466654
Q ss_pred c-cCceee---------eeecccccCccccc--------------------cCcccc------CCCCeEEEEEccCCceE
Q 000992 145 H-DWDLLY---------ENPLEELAEGFDVH--------------------EPELSS------SFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 145 ~-~~d~~~---------~~~l~~~~~~~~Vs--------------------~tqf~~------~~~~v~~isWspDG~~l 188 (1196)
. +++.+. ...+.+..+.-+|- +.+.+. .....+...|.+-|.-|
T Consensus 153 ~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 153 LGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL 232 (566)
T ss_pred cCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence 2 222211 11122211000010 111110 11234678999877732
Q ss_pred -E-Eeeccccc-c--CCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 189 -A-TLSEFCNS-S--KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 189 -A-svss~d~~-~--~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
+ +++.+|.. . =+..++.+.+. +|+-...--...|.|+++.|+|+|+-+|.+-..- .-.|.||+.+|....
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t-~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM----PAkvtifnlr~~~v~ 307 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLAT-QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFM----PAKVTIFNLRGKPVF 307 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEe-cCceEEEecCCCCCceEEEECCCCCEEEEEEecc----cceEEEEcCCCCEeE
Confidence 2 13334421 0 13467888898 6777666656789999999999999887764321 357999999987654
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEec
Q 000992 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
+ ++ ++.=+.+-|||-|.+|+.++-+.-.+.|.+||+.|++ +...+...+.+.+.|+|+|.. +.+.+.
T Consensus 308 d--f~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~~tt~~eW~PdGe~-flTATT 374 (566)
T KOG2315|consen 308 D--FP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAANTTVFEWSPDGEY-FLTATT 374 (566)
T ss_pred e--CC---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh----hccccccCCceEEEEcCCCcE-EEEEec
Confidence 3 33 3445689999999999999876533469999999964 333333334478899999976 445443
No 238
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=5.8e-07 Score=104.09 Aligned_cols=321 Identities=16% Similarity=0.181 Sum_probs=190.0
Q ss_pred CEEEEEECCCc--EEEEECCCCeEE-EeeeecCc-EEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCcc
Q 000992 88 EALIVGTSSGL--LLLHSVDGNATE-VVGRVEGG-VRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 88 ~~La~as~dG~--I~lw~~~~~~~e-~vg~~~~~-I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~ 162 (1196)
.+.|+....++ ...||....... +... ... =+-+.|||-|.+|++--.-| |.+|. .+|+.+.... |
T Consensus 179 DQf~v~~d~~~~~svfwN~~~n~p~~ie~R-enWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H------ 249 (698)
T KOG2314|consen 179 DQFVVQDDVKTTVSVFWNSKFNEPSLIEER-ENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H------ 249 (698)
T ss_pred ceEEEEecCcceeEEEccccCCchhhhhhh-hcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C------
Confidence 45666665555 455887553221 2111 222 35688999999999987765 77885 5565543322 2
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccc-----cCCCCEEEEEECCCCcEEEEeccC--CCce-eEEEEcCCC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELK--AFMG-AVLEWMPSG 234 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~-----~~~d~~irVWd~~~G~l~~~~e~~--~~~v-~slawsPdG 234 (1196)
.+|.-|.|||.-+||+|-|. .+. +.+...++|||..+|.+..++.-. .... .-..||-|+
T Consensus 250 -----------p~Vq~idfSP~EkYLVT~s~-~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 250 -----------PGVQFIDFSPNEKYLVTYSP-EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD 317 (698)
T ss_pred -----------CCceeeecCCccceEEEecC-CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC
Confidence 24578999999999995432 222 123468999999999998887542 2223 456899999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc---CCCCcEEEEEEccCCCeeEEEEccCCcc--eEEEEEecCCEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE---QIDSTVELLKWNCMSDLLAAVVRFEEYD--SVKICFFSNNHW 309 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~---~~~~~V~~laWSpDg~~LAs~~~d~~~~--~V~lW~~~n~~w 309 (1196)
+++|....+ .|.+||.-. |.|-. -.-..|...+|||-+++||-++...... .+.|-.+..
T Consensus 318 Ky~Arm~~~-------sisIyEtps-----f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs--- 382 (698)
T KOG2314|consen 318 KYFARMTGN-------SISIYETPS-----FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS--- 382 (698)
T ss_pred ceeEEeccc-------eEEEEecCc-----eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc---
Confidence 999987653 588888532 22210 0124588999999999999998765211 455554443
Q ss_pred EEEEEEEEec---CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 310 YLKYEIRYLR---RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 310 ylkq~l~~~~---~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
+++|+... -.-..+.|-..|.. |.+-. ...+...-.|+. .++-+.-++..+||- .
T Consensus 383 --~~~iRt~nlfnVsDckLhWQk~gdy-Lcvkv----------dR~tK~~~~g~f-----~n~eIfrireKdIpv----e 440 (698)
T KOG2314|consen 383 --KREIRTKNLFNVSDCKLHWQKSGDY-LCVKV----------DRHTKSKVKGQF-----SNLEIFRIREKDIPV----E 440 (698)
T ss_pred --cceeeeccceeeeccEEEeccCCcE-EEEEE----------EeeccccccceE-----eeEEEEEeeccCCCc----e
Confidence 23333110 00023455555443 22211 110000000111 134444555666542 3
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEE
Q 000992 387 SLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 463 (1196)
Q Consensus 387 ~l~~~~~V~~Vafspdg~~~~lAs~~~d---g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla 463 (1196)
.+++.+.|..-+|-|.| +.+|+.+.+ .++.+|...+. ++.+.....+ ......++.|+|.|++++
T Consensus 441 ~velke~vi~FaWEP~g--dkF~vi~g~~~k~tvsfY~~e~~-------~~~~~lVk~~---dk~~~N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHG--DKFAVISGNTVKNTVSFYAVETN-------IKKPSLVKEL---DKKFANTVFWSPKGRFVV 508 (698)
T ss_pred eeecchheeeeeeccCC--CeEEEEEccccccceeEEEeecC-------CCchhhhhhh---cccccceEEEcCCCcEEE
Confidence 45678899999999999 888888765 68888887631 1111111111 112577889999999988
Q ss_pred EEecC-CCCceEEEEe
Q 000992 464 VSHHG-PRHSNYFRGA 478 (1196)
Q Consensus 464 ~~~~~-~~~~~~~~~~ 478 (1196)
++.-. ....+.++..
T Consensus 509 va~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 509 VAALVSRRGDLEFYDT 524 (698)
T ss_pred EEEecccccceEEEec
Confidence 76553 2355566655
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.93 E-value=1.7e-08 Score=107.43 Aligned_cols=253 Identities=13% Similarity=0.147 Sum_probs=161.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce---
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--- 149 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~--- 149 (1196)
.+.|+++-|-.+++ |-+++..|-|++|+++|.+- .+-+.+...|+.+.-=|+ ..|.+-+.|..+.+|+..+..
T Consensus 14 ~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 14 SSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE
Confidence 45788888887766 77899999999999998643 233345678999999998 566777889999999866521
Q ss_pred eeeeeccccc--------Ccc----------------ccc----cCccc-------cCCCCeEEEEEcc-CCceEEEeec
Q 000992 150 LYENPLEELA--------EGF----------------DVH----EPELS-------SSFSFKSPISWRG-DGKYFATLSE 193 (1196)
Q Consensus 150 ~~~~~l~~~~--------~~~----------------~Vs----~tqf~-------~~~~~v~~isWsp-DG~~lAsvss 193 (1196)
+..+.+.... ..+ ++. .+|.+ +..+.+.+..|-- +|.++.-.++
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 1111111111 001 110 11211 3345677777654 4444331454
Q ss_pred cccccCCCCEEEEEECCCCcE----------EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe---
Q 000992 194 FCNSSKLHKRLKVWERDSGTL----------QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--- 260 (1196)
Q Consensus 194 ~d~~~~~d~~irVWd~~~G~l----------~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl--- 260 (1196)
. +++.|-+||..+|.. .+-...|.+.+.++.+-|.-+.=++++.+ ..+..|..|-.
T Consensus 172 y-----Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~------dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 172 Y-----ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD------DKLVMYSLNHSTGS 240 (323)
T ss_pred c-----cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc------ccceeeeeccccCc
Confidence 3 468999999977722 22222366778888888765544444432 34566765421
Q ss_pred -eE-EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 261 -ER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 261 -~~-~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
.+ ++.++..+ .|..+..-||+++||+++.|+ .|++++..+. .| |++.
T Consensus 241 lq~~~e~~lknp---Gv~gvrIRpD~KIlATAGWD~---RiRVyswrtl-----------------------~p--LAVL 289 (323)
T KOG0322|consen 241 LQIRKEITLKNP---GVSGVRIRPDGKILATAGWDH---RIRVYSWRTL-----------------------NP--LAVL 289 (323)
T ss_pred ccccceEEecCC---CccceEEccCCcEEeecccCC---cEEEEEeccC-----------------------Cc--hhhh
Confidence 22 22233333 478899999999999999998 7777543321 11 1221
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEE
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~ 418 (1196)
. .|.+.|++||||||. +.+|+++.|++|.
T Consensus 290 k-------------------------------------------------yHsagvn~vAfspd~--~lmAaaskD~rIS 318 (323)
T KOG0322|consen 290 K-------------------------------------------------YHSAGVNAVAFSPDC--ELMAAASKDARIS 318 (323)
T ss_pred h-------------------------------------------------hhhcceeEEEeCCCC--chhhhccCCceEE
Confidence 1 156778999999997 7999999999999
Q ss_pred EEeC
Q 000992 419 VVDL 422 (1196)
Q Consensus 419 lw~~ 422 (1196)
||++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9985
No 240
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=8e-08 Score=106.44 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=173.2
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
+.| |.+.|+++.||.+|++||+|+.|..+++|+.+--....+ .++|. ..-++|...|.+++|.....++-
T Consensus 52 ~~~-H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-------~KPI~-~~~~~H~SNIF~L~F~~~N~~~~- 121 (609)
T KOG4227|consen 52 VRE-HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-------PKPIG-VMEHPHRSNIFSLEFDLENRFLY- 121 (609)
T ss_pred hhh-hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-------CCCce-eccCccccceEEEEEccCCeeEe-
Confidence 445 578899999999999999999999999997431111111 12220 01124557899999998777666
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEecc--CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEe
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDI 267 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l 267 (1196)
++. .+++|-.-|.++.+.+..... ..|.|..++-+|--+.+|+.++++ .|.||+. ....+++..+
T Consensus 122 SG~------~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~------~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 122 SGE------RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAK------LVSFIDNRDRQNPISLVL 189 (609)
T ss_pred cCC------CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCc------eEEEEeccCCCCCCceee
Confidence 453 468888889988888877643 346889999999999999999864 6889983 2222555444
Q ss_pred ccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEE--E-EEEecCC--cEEEEEccCCCceEEEEecC
Q 000992 268 NEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKY--E-IRYLRRD--GIRFMWHPTKPLQLICWTLD 341 (1196)
Q Consensus 268 ~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq--~-l~~~~~~--~~~v~Wsp~~~~~L~~~~~~ 341 (1196)
+..-...-.++-|+|--- +||+.+..+ -+-+|+..-..--+-| - +...+.. -..+.|+|.|.+. +....
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~-msiRR- 264 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF-MSIRR- 264 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCee-hhhhc-
Confidence 422223467889999765 667777666 5889997632210000 0 0011111 1568899988652 22211
Q ss_pred Cc-EEEEEEE--------Eeee---------------cCCCeeEEEEcCCEEEEeeccccC--------------CCCCc
Q 000992 342 GQ-ITTYNFI--------WTTA---------------VMENSTALVIDGSKILVTPLSLSL--------------MPPPM 383 (1196)
Q Consensus 342 g~-~~~~~~~--------~~~~---------------~~d~~~v~viDg~~l~lt~l~~~~--------------vpppm 383 (1196)
|. -..+++. ++.. ..|..++...|.=.|.+|-+-..+ +|..+
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 11 0011111 1111 112222233444456777543221 11111
Q ss_pred e----eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 384 Y----LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 384 ~----~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
. +-.+ +|.+-++.|.|+|.. ++|++.+..+.++||.--
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~--~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHN--NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecccccccceeecCCc--ceEeccchhhheeccccc
Confidence 1 1122 367778999999999 899999999999999753
No 241
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.90 E-value=1.9e-07 Score=100.70 Aligned_cols=266 Identities=15% Similarity=0.226 Sum_probs=175.0
Q ss_pred eEEEEEc--cCCc-eEEEeeccccccCCCCEEEEEE--CCCCcEEEEe-ccCCCceeEEEEcCCC-----CeEEEEecCC
Q 000992 176 KSPISWR--GDGK-YFATLSEFCNSSKLHKRLKVWE--RDSGTLQASS-ELKAFMGAVLEWMPSG-----ANIAAVYDRK 244 (1196)
Q Consensus 176 v~~isWs--pDG~-~lAsvss~d~~~~~d~~irVWd--~~~G~l~~~~-e~~~~~v~slawsPdG-----~~IAs~s~d~ 244 (1196)
...+.|| ||.+ ++| +++...+ ..++|.|-. -++|++.... -.|...++.+.|.||. .+||++++
T Consensus 47 lya~~Ws~~~~~~~rla-~gS~~Ee--~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLA-VGSFIEE--YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred eeeeccccCCCcceeEE-Eeeeccc--cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--
Confidence 4677887 5544 577 8887543 456666653 3467666543 2478889999999997 37898876
Q ss_pred CCCCCCeEEEEeCCC---eeEEEEEec----cCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCC-EEEEEEEE
Q 000992 245 SENKCPSIVFYERNG---LERSSFDIN----EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEI 315 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nG---l~~~~f~l~----~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l 315 (1196)
.+++|..+- ..+-+..|. .+....+.+..|+. |=.++.+.+-|. |-.+|++... --+.|-.+
T Consensus 122 ------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT---TCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 122 ------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT---TCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred ------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC---eEEEEEEeeccccceeeEE
Confidence 489997542 111111222 12235688999996 667788888888 9999999874 33566667
Q ss_pred EEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEe---ee----cC-------------C-Cee-EEEEcCCEEEEee
Q 000992 316 RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWT---TA----VM-------------E-NST-ALVIDGSKILVTP 373 (1196)
Q Consensus 316 ~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~---~~----~~-------------d-~~~-v~viDg~~l~lt~ 373 (1196)
..|..++..++|...+...++....||.+.+++...- +- |. | .-+ ...-|.+.|.+-+
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 6766667889999977777777778999987665311 10 11 1 111 2335778888877
Q ss_pred ccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEE
Q 000992 374 LSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIH 452 (1196)
Q Consensus 374 l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 452 (1196)
+|. |.+....+ .|.+.|+.|+|.|... +.|++++.|..+-+|++..... ..+. .+.+.-.....|.+
T Consensus 273 iR~----P~tpva~L~~H~a~VNgIaWaPhS~-~hictaGDD~qaliWDl~q~~~---~~~~----dPilay~a~~EVNq 340 (364)
T KOG0290|consen 273 IRV----PCTPVARLRNHQASVNGIAWAPHSS-SHICTAGDDCQALIWDLQQMPR---ENGE----DPILAYTAGGEVNQ 340 (364)
T ss_pred ecC----CCcceehhhcCcccccceEecCCCC-ceeeecCCcceEEEEecccccc---cCCC----Cchhhhhccceeee
Confidence 763 22233345 4999999999999974 8899999999999999975211 0110 01111112247999
Q ss_pred EEEec-CCeEEEEEec
Q 000992 453 LIWLG-SHLLLSVSHH 467 (1196)
Q Consensus 453 l~~~~-d~~lla~~~~ 467 (1196)
+.|++ .+..+|+++.
T Consensus 341 i~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICFG 356 (364)
T ss_pred eeecccCCCEEEEEec
Confidence 99985 4566777765
No 242
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.87 E-value=6.5e-09 Score=110.54 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=119.2
Q ss_pred CCEEEEEEcc-CCC--EEEEEECCCcEEEEECCCC----------eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEE
Q 000992 76 DSITAFDYLM-EKE--ALIVGTSSGLLLLHSVDGN----------ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQIL 141 (1196)
Q Consensus 76 ~~v~~v~~sp-d~~--~La~as~dG~I~lw~~~~~----------~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~ 141 (1196)
+.|.+..|-. ++. .|+.|.++|.|.+||..++ +.+ -...|...|.++.+.|.-..=++++.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 5566666433 232 4567889999999999885 222 3455788999999998877778888888899
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~ 221 (1196)
+|+.+|+...- ++..... -...++..+..||||+.|| .++ .|+.||||+-.+++.+..+.-|
T Consensus 231 ~~Sl~~s~gsl-q~~~e~~----------lknpGv~gvrIRpD~KIlA-TAG------WD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 231 MYSLNHSTGSL-QIRKEIT----------LKNPGVSGVRIRPDGKILA-TAG------WDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred eeeeccccCcc-cccceEE----------ecCCCccceEEccCCcEEe-ecc------cCCcEEEEEeccCCchhhhhhh
Confidence 99877764221 1110000 0123678899999999999 565 4689999998899999999999
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
.+.++++||+||-+++|+++.|. .|.+|.
T Consensus 293 sagvn~vAfspd~~lmAaaskD~------rISLWk 321 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDA------RISLWK 321 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCc------eEEeee
Confidence 99999999999999999999874 699996
No 243
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.86 E-value=1.9e-07 Score=113.35 Aligned_cols=252 Identities=12% Similarity=0.064 Sum_probs=160.1
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCE--EEEEECCCc
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA--LIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~--La~as~dG~ 98 (1196)
.+.++.|-+. .+.+..++.+++|..||+ ...... ++..+..+.-...+.++.+.|..+-.- ++++|.||.
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~--~~~~~~-----~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~ 316 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDL--RKGSDT-----PPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGS 316 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEc--cCCCCC-----CCcccccccccCCcCeEEEEEeccCCCCceEEEecCCc
Confidence 6777777755 466666688999999999 443331 122222111112468999999776555 899999999
Q ss_pred EEEEECCCCe-------EEEee------eecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeee-eecccccCccc
Q 000992 99 LLLHSVDGNA-------TEVVG------RVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFD 163 (1196)
Q Consensus 99 I~lw~~~~~~-------~e~vg------~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~-~~l~~~~~~~~ 163 (1196)
|..|+.+.-. .+..- .-..++++++|.|- -..+.+||.+|.|.--++..-.... .....
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~------ 390 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG------ 390 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc------
Confidence 9999876311 11111 11357899999775 3467788899988654432211111 00010
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCC-eEEEEe
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGA-NIAAVY 241 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s 241 (1196)
..++..|.+.+..|.|+|=+.-+. .++ +|-++|||.-. .-..+..++.....+.+++|||--- .+|++.
T Consensus 391 --~~~~~~h~g~v~~v~~nPF~~k~f-ls~------gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 391 --HSTFITHIGPVYAVSRNPFYPKNF-LSV------GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred --cccccccCcceEeeecCCCcccee-eee------ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 013346788999999999887554 232 36899999874 3333334444555689999999874 556665
Q ss_pred cCCCCCCCCeEEEEeCCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 242 DRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 242 ~d~~~~~~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.+ +.+-+||.+-...+- ++.. ........+.|+++|++||+|...| ++.+|++.
T Consensus 462 ~~------G~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd~~G---~~~~~~l~ 516 (555)
T KOG1587|consen 462 GD------GNLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGDANG---TTHILKLS 516 (555)
T ss_pred CC------CceehhhhhccccCC-cccccccccccceeecCCCCcEEEEecCCC---cEEEEEcC
Confidence 54 468899964222111 1110 1123456789999999999999999 89999985
No 244
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.8e-05 Score=92.42 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=92.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN 196 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~ 196 (1196)
+.|.|.+++ ++.+|.||-+|.|.+.+..+++ .....+. . + .-+|+|+| +.|
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s----------------~---~---~~~Gey~a-sCS--- 90 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHS----------------S---S---ILEGEYVA-SCS--- 90 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccc----------------c---c---ccCCceEE-Eec---
Confidence 457777777 6899999999999988777765 2211110 0 1 55899999 455
Q ss_pred ccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC-----CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccC
Q 000992 197 SSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQ 270 (1196)
Q Consensus 197 ~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd-----G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~ 270 (1196)
.|++|.|-...+++...+.. ...++.+|+++|+ .+...+|+. ++ ++++|||-+....- .+. .
T Consensus 91 ---~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~------ag-lvL~er~wlgnk~~v~l~-~ 158 (846)
T KOG2066|consen 91 ---DDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGM------AG-LVLSERNWLGNKDSVVLS-E 158 (846)
T ss_pred ---CCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCc------ce-EEEehhhhhcCccceeee-c
Confidence 46888887776665544333 3456789999999 445666665 23 99999874432211 122 2
Q ss_pred CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 271 IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 271 ~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.++.|.++.|. |.++|=+..+| |+++++..
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G----v~vyd~~~ 188 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG----VKVYDTPT 188 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC----cEEEeccc
Confidence 34567777774 55666666666 77776654
No 245
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.8e-07 Score=103.62 Aligned_cols=280 Identities=12% Similarity=0.085 Sum_probs=172.0
Q ss_pred cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC------cEEEEe-ccCCCceeEEEEcCCCCeEEEEecC
Q 000992 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG------TLQASS-ELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G------~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
+|.+-|..|.||.+|++|| +++ .|+.++||+.++. +.+... ++|...+.+++|.--...+-||.++
T Consensus 54 ~H~GCiNAlqFS~N~~~L~-SGG------DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLA-SGG------DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhccccceeeeccCCeEEe-ecC------CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 6788899999999999999 565 5799999998432 222222 4566789999999998999999886
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc
Q 000992 244 KSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~ 322 (1196)
. +|+..+...... ..... ....+.|+.+.-+|-..+||+.+.++ .|-+|+.....- .-++....+.+
T Consensus 127 ~------~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd~~~--~~~~~~~AN~~ 194 (609)
T KOG4227|consen 127 G------TVIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRDRQN--PISLVLPANSG 194 (609)
T ss_pred c------eeEeeeccccee-eeeecccCcccceeecccCCCCceEEEEecCc---eEEEEeccCCCC--CCceeeecCCC
Confidence 4 577776432221 11111 12235799999999999999999999 999999763210 01333334433
Q ss_pred ---EEEEEccCCCceEEEEecCCcEEEEEEEEeee-----------cC-C---CeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 323 ---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA-----------VM-E---NSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 323 ---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~-----------~~-d---~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
.++.|+|+.|..|.+.+..|.+..++..-... +. . .+......|+.++ .++... ||..
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m--siRR~~--~P~~ 270 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM--SIRRGK--CPLY 270 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh--hhhccC--CCEE
Confidence 67899999998777777655554333221000 11 0 1222223444432 233221 2322
Q ss_pred ee-------eec--CC-------CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccc--cccCCce-------eee
Q 000992 385 LF-------SLK--FP-------TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE--DLEGTEF-------VVE 439 (1196)
Q Consensus 385 ~~-------~l~--~~-------~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~--~~~g~~~-------~~~ 439 (1196)
+. .++ |. ..+.+..|.-|- .+|+++.+-.|++|.+....... +.-|+.- .+.
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 11 112 21 135678888775 69999999999999986421110 0012210 111
Q ss_pred e--ecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 440 A--CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 440 ~--~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
. ..+.+|...+.++.|+|-..+|++.+- .+.+++|+-
T Consensus 348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV--E~~~KlWS~ 386 (609)
T KOG4227|consen 348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGV--ENSFKLWSD 386 (609)
T ss_pred ceeEEEecccccccceeecCCcceEeccch--hhheecccc
Confidence 1 112467778999999999888775443 367788863
No 246
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=4.6e-07 Score=111.31 Aligned_cols=295 Identities=13% Similarity=0.088 Sum_probs=169.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EE--ee-eecCcEEEEEEC--CCCCEEEEEeCCceEEEEeccCcee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EV--VG-RVEGGVRFISPS--PDGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~--vg-~~~~~I~~~awS--PDg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
....+.|+|=..+++++...-.|.+||-+.++. .- .| ....+|..+.+= -|-.+|.+++.||.|++|..-.+.-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 356788899889999888778899999875543 21 11 123568887773 3567899999999999994221110
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLE 229 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~sla 229 (1196)
....+.+.- ..+ +.+..+..+.-.-+.|--...+|. +++ +-|.|||||...-.+.... -+.+..+++++
T Consensus 1146 ~~~eLVTaw--~~L-s~~~~~~r~~~~v~dWqQ~~G~Ll-~tG------d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1146 KKPELVTAW--SSL-SDQLPGARGTGLVVDWQQQSGHLL-VTG------DVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred CCceeEEee--ccc-cccCccCCCCCeeeehhhhCCeEE-ecC------CeeEEEEEecccceeEeecccCCCccceeec
Confidence 111111100 000 111111112125688988877887 554 3489999999433333322 22334556554
Q ss_pred E-cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE--EEEEeccCCCCc--EEEEEEccCCCe-eEEEEccCCcceEEEEE
Q 000992 230 W-MPSGANIAAVYDRKSENKCPSIVFYERNGLER--SSFDINEQIDST--VELLKWNCMSDL-LAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 230 w-sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~--~~f~l~~~~~~~--V~~laWSpDg~~-LAs~~~d~~~~~V~lW~ 303 (1196)
= .+.|++||.|-.|+ .|++||+---.. ..-..+ ++... |..+.+.+.|-- |.+++.+| .|++||
T Consensus 1216 ~~~~~gn~i~AGfaDG------svRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G---~I~~~D 1285 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADG------SVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDG---DIQLLD 1285 (1387)
T ss_pred ccccCCceEEEeecCC------ceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCC---eEEEEe
Confidence 3 34579999998864 599999631111 001112 23333 999999998876 99999999 899999
Q ss_pred ecCC-E-EEEEEEEEEec--CC-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 304 FSNN-H-WYLKYEIRYLR--RD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 304 ~~n~-~-wylkq~l~~~~--~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
+... . -++. +..+- .+ .+.+.-|+..+. ++.++ ++.+++|.+.+..
T Consensus 1286 lR~~~~e~~~~--iv~~~~yGs~lTal~VH~hapi-iAsGs--------------------------~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1286 LRMSSKETFLT--IVAHWEYGSALTALTVHEHAPI-IASGS--------------------------AQLIKIYSLSGEQ 1336 (1387)
T ss_pred cccCcccccce--eeeccccCccceeeeeccCCCe-eeecC--------------------------cceEEEEecChhh
Confidence 7641 0 0111 11110 11 134444444442 22222 2333333333221
Q ss_pred C----CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 379 M----PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 379 v----pppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+ +.|... -+-.+.+.+++|+|-. -+||+|..|.+|.||..+.
T Consensus 1337 l~~~k~n~~F~--~q~~gs~scL~FHP~~--~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1337 LNIIKYNPGFM--GQRIGSVSCLAFHPHR--LLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hcccccCcccc--cCcCCCcceeeecchh--HhhhhccCCceEEEeecCC
Confidence 1 112110 0123456899999987 6899999999999998764
No 247
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.80 E-value=3.1e-06 Score=111.95 Aligned_cols=265 Identities=13% Similarity=0.032 Sum_probs=155.0
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeec-cccccccccC--CCCCCEEEEEEccCCCEEEEEE-CC
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTA-ISAEIEHIDL--EPGDSITAFDYLMEKEALIVGT-SS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~~~--~~~~~v~~v~~spd~~~La~as-~d 96 (1196)
.+..+++|+.++.||++. .++.|..+|.+ .+.. ..+.. -+.++..-++ ..-..+.+|++.++++.|.++. .+
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~--G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD--GNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC--CCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 345789999988899884 46679899873 2211 11110 0000000000 0014578999999998776654 45
Q ss_pred CcEEEEECCCCeEEEe-ee------ec----------CcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeecccc
Q 000992 97 GLLLLHSVDGNATEVV-GR------VE----------GGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~v-g~------~~----------~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
+.|+.+|..++.+.++ |. .. ..-+.++|+| +|.+.++.+++++|.+|+.....+........
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 6788899988777643 21 00 1125799999 56666777788899888643222221111000
Q ss_pred c---CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--cc-----------CC
Q 000992 159 A---EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--EL-----------KA 222 (1196)
Q Consensus 159 ~---~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~-----------~~ 222 (1196)
. .+.......| ..-..|+|+|||+++. ++. .++++|++||..+|...... .+ .+
T Consensus 726 ~~~~~g~~~~~~~~----~~P~GIavspdG~~LY-VAD-----s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 726 ERNLNGSSGTSTSF----AQPSGISLSPDLKELY-IAD-----SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred cccCCCCccccccc----cCccEEEEeCCCCEEE-EEE-----CCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 0 0000000011 2336799999998665 443 24689999998666532111 00 01
Q ss_pred C--------ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC-----------CCCcEEEEEEccC
Q 000992 223 F--------MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-----------IDSTVELLKWNCM 283 (1196)
Q Consensus 223 ~--------~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-----------~~~~V~~laWSpD 283 (1196)
+ .-..++|+|+|+++++-+. .+.|+.|+.++.....+.-.+. .-.....|+++||
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 1 1258999999997766554 3689999976533222110000 0124678999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+++++-+.+. +|++|+..+..
T Consensus 870 G~lyVaDt~Nn---~Irvid~~~~~ 891 (1057)
T PLN02919 870 GRLFVADTNNS---LIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEECCCC---EEEEEECCCCc
Confidence 99877766666 99999997643
No 248
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=2.9e-07 Score=101.45 Aligned_cols=194 Identities=13% Similarity=0.219 Sum_probs=134.1
Q ss_pred CCEEEEEECCCCcEEEEeccCCCceeEEEEcC--CCCeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCCcEEE
Q 000992 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVEL 277 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~v~slawsP--dG~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~V~~ 277 (1196)
.+.||+||..+|+.+..+.++++.+..+.|.- .+..+-|++.| .+|++|+..-. +...+....+....-..
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD------G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD------GTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccC------CeEEEEEeecchhhhheeccCCCCCcceE
Confidence 58999999999999999999999889999977 56778888876 46999994211 11111111221234667
Q ss_pred EEEccCCCeeEEEEccCCcc-eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecC
Q 000992 278 LKWNCMSDLLAAVVRFEEYD-SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~-~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1196)
++-+..+.++|.++.-.... .|.|||+.+..-.+.+-...|.++++.+.|||.+|..|..++-||-+.. |++.-+
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl----fD~~~d 198 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL----FDTKKD 198 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe----eecCCC
Confidence 88888999999997644222 7999999875422222233455667999999999998888777775543 333211
Q ss_pred CCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 357 d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
+-..++ ..++-+.+.|..+.|..++= +.|-..++.+++.+|++....+
T Consensus 199 ---------------------~EeDaL-~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 199 ---------------------NEEDAL-LHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred ---------------------cchhhH-HHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCCh
Confidence 111111 13345677899999999873 5799999999999999986543
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=6.1e-06 Score=96.49 Aligned_cols=325 Identities=14% Similarity=0.179 Sum_probs=181.7
Q ss_pred cEEEEECCCCe--EEEeeee--cCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccC
Q 000992 98 LLLLHSVDGNA--TEVVGRV--EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 ~I~lw~~~~~~--~e~vg~~--~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.+.+|+..+.. ....+.. ....+..++||+|+++|..+++ .|+|.+..-. ++-...+
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~-~v~i~~~~~~~~~lt~~~----------------- 73 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQ-VVKVFEIATLKVVLCVEL----------------- 73 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCC-eEEEEEccCCcEEEEecc-----------------
Confidence 37788865421 1122221 3346789999999999998876 5655432111 1111111
Q ss_pred CCCeEEEEEccCCceEEEeeccccc------cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~------~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
..+..+-|||-|.||.| ..+- ..+..-+++|+.++|...+........-+.+.||+|-.+.|=..
T Consensus 74 -~~~~~L~fSP~g~yL~T---~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----- 144 (566)
T KOG2315|consen 74 -KKTYDLLFSPKGNYLLT---WEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----- 144 (566)
T ss_pred -ceeeeeeeccccccccc---ccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhh-----
Confidence 13478999999999972 1111 01234588999988766655432222226899999988765332
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC--eeEEEEccCCc--ceEEEEEec--CCEEEEEEEEEEecC
Q 000992 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEY--DSVKICFFS--NNHWYLKYEIRYLRR 320 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~--~LAs~~~d~~~--~~V~lW~~~--n~~wylkq~l~~~~~ 320 (1196)
.+.|.||+.++-..-.-.|+ ...|..+++||-++ .+|+-.-..++ ..|+||... +.|--+ ..-.|...
T Consensus 145 --~nev~f~~~~~f~~~~~kl~---~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-a~ksFFka 218 (566)
T KOG2315|consen 145 --SNEVQFYDLGSFKTIQHKLS---VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-ANKSFFKA 218 (566)
T ss_pred --cceEEEEecCCccceeeeee---ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-hhcccccc
Confidence 25799999776322221232 34688999999866 45543322221 279999877 333111 01112223
Q ss_pred CcEEEEEccCCCceEEEEec--------------------CCcE---------EEEEEEEeeecCCCeeEEEEcCCEEEE
Q 000992 321 DGIRFMWHPTKPLQLICWTL--------------------DGQI---------TTYNFIWTTAVMENSTALVIDGSKILV 371 (1196)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~--------------------~g~~---------~~~~~~~~~~~~d~~~v~viDg~~l~l 371 (1196)
+...+.|.+-+.-.|.+.+. +|.- -++++.|+.+....++|..-=-.++.+
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 34667888766543333321 1110 024444443211111111112233444
Q ss_pred eeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccccccCCceeeeeecccccCC
Q 000992 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 448 (1196)
Q Consensus 372 t~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~d---g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (1196)
.+++..+| +.+ -+++=+++-|+|.| ++|+.++-+ |.|.+||+.+..++..+. ..
T Consensus 299 fnlr~~~v------~df-~egpRN~~~fnp~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--------------a~ 355 (566)
T KOG2315|consen 299 FNLRGKPV------FDF-PEGPRNTAFFNPHG--NIILLAGFGNLPGDMEVWDVPNRKLIAKFK--------------AA 355 (566)
T ss_pred EcCCCCEe------EeC-CCCCccceEECCCC--CEEEEeecCCCCCceEEEeccchhhccccc--------------cC
Confidence 44443322 111 13455789999999 888877754 899999998754442111 11
Q ss_pred cEEEEEEecCCeEEEEEecCCC----CceEEEEe
Q 000992 449 SVIHLIWLGSHLLLSVSHHGPR----HSNYFRGA 478 (1196)
Q Consensus 449 ~v~~l~~~~d~~lla~~~~~~~----~~~~~~~~ 478 (1196)
...-+.|+|||+++.++.-.+. +.+++|++
T Consensus 356 ~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 3345689999999988776432 67889987
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.72 E-value=5.9e-06 Score=95.45 Aligned_cols=323 Identities=14% Similarity=0.106 Sum_probs=188.7
Q ss_pred EEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
.|+..+.... .+++..=++..++|||-|.+|++.+..| |.+|. ..|+.+.... + ..|..
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-----------------~~V~~ 76 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-----------------PDVKY 76 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-----------------CCcee
Confidence 3666654443 5665456789999999999999998774 77875 4455333222 1 24578
Q ss_pred EEEccCCceEEEeeccccc--------c-CCCCEEEEEECCCCcEEEEeccCCCc--ee-EEEEcCCCCeEEEEecCCCC
Q 000992 179 ISWRGDGKYFATLSEFCNS--------S-KLHKRLKVWERDSGTLQASSELKAFM--GA-VLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~--------~-~~d~~irVWd~~~G~l~~~~e~~~~~--v~-slawsPdG~~IAs~s~d~~~ 246 (1196)
+.|||.|+||.|=+ ..+. + +.+..+.|||..+|.+..++...... .+ -+.||-|-++.|=...
T Consensus 77 ~~fSP~~kYL~tw~-~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~---- 151 (561)
T COG5354 77 LDFSPNEKYLVTWS-REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG---- 151 (561)
T ss_pred cccCcccceeeeec-cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc----
Confidence 99999999998422 2111 0 23346999999999999988754433 44 7899999998875532
Q ss_pred CCCCeEEEEeCCCee-EEEE-EeccCCCCcEEEEEEccC--CCeeEEEEccCCc--ceEEEEEecCCEEEEEEEEEEecC
Q 000992 247 NKCPSIVFYERNGLE-RSSF-DINEQIDSTVELLKWNCM--SDLLAAVVRFEEY--DSVKICFFSNNHWYLKYEIRYLRR 320 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~-~~~f-~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~--~~V~lW~~~n~~wylkq~l~~~~~ 320 (1196)
+.+.+++..+.. .+.| .++ ...|...+|||- +..||...-...+ .++++|.+.-..-...+.+ | .-
T Consensus 152 ---~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-f-k~ 223 (561)
T COG5354 152 ---SSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-F-KV 223 (561)
T ss_pred ---CeEEEEecCCccccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-E-ee
Confidence 468888853221 1111 111 246889999996 4567877654422 2799999873321111111 1 12
Q ss_pred CcEEEEEccCCCceEEEEec---CC-cE------E------------------EEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 321 DGIRFMWHPTKPLQLICWTL---DG-QI------T------------------TYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~---~g-~~------~------------------~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
+...+.|++.|...|...-. ++ .+ . +.+|.|....+..+++...-...+.++
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVF 303 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeec
Confidence 33678899988764433321 11 11 1 234455433222233332233344455
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccc-cccCCceeeeeecccccCC
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLE-DLEGTEFVVEACISETAFG 448 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~d---g~v~lw~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ 448 (1196)
++++..+ ....+..=+.+.|||.+ +++..++-| |.+.+|+..+.-.+. ++.|.
T Consensus 304 ~lr~Nl~-------~~~Pe~~rNT~~fsp~~--r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-------------- 360 (561)
T COG5354 304 DLRGNLR-------FYFPEQKRNTIFFSPHE--RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-------------- 360 (561)
T ss_pred ccccceE-------EecCCcccccccccCcc--cEEEEecCCccccceEEeccCCceEEEEEeecC--------------
Confidence 5543211 01112223567899998 777665554 788999887532221 12221
Q ss_pred cEEEEEEecCCeEEEEEecCCC----CceEEEEe
Q 000992 449 SVIHLIWLGSHLLLSVSHHGPR----HSNYFRGA 478 (1196)
Q Consensus 449 ~v~~l~~~~d~~lla~~~~~~~----~~~~~~~~ 478 (1196)
...-.-|+||++++-++..+.- +.+.+|.+
T Consensus 361 n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 361 NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred CceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 2334469999999877655322 56777776
No 251
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=9.7e-06 Score=85.85 Aligned_cols=203 Identities=12% Similarity=0.086 Sum_probs=128.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCC---------CeEEEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG---------NATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~---------~~~e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
.|.+=+|+|-+++|+.|+.+|+|.+.++.+ ++..++ ..|+++|..++|- | ..|.++ +||.|+=|-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d-~~Lls~-gdG~V~gw~- 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D-DFLLSG-GDGLVYGWE- 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h-hheeec-cCceEEEee-
Confidence 355667899999999999999999988752 233333 4689999999998 3 355544 569997763
Q ss_pred cCceeee-eecccccC---ccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC
Q 000992 146 DWDLLYE-NPLEELAE---GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1196)
Q Consensus 146 ~~d~~~~-~~l~~~~~---~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~ 221 (1196)
|....+ ......-+ ..++.. ..-..|..+.--|...-+. .++ +|+.+.-||.++|+...++.+|
T Consensus 88 -W~E~~es~~~K~lwe~~~P~~~~~----~evPeINam~ldP~enSi~-~Ag------GD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 88 -WNEEEESLATKRLWEVKIPMQVDA----VEVPEINAMWLDPSENSIL-FAG------GDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred -ehhhhhhccchhhhhhcCccccCc----ccCCccceeEeccCCCcEE-Eec------CCeEEEEEEecCCEEEEEEcCC
Confidence 433222 10000000 000000 0002345666666555444 232 5799999999999999999999
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec------cCC-CCcEEEEEEccCCCeeEEEEcc
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN------EQI-DSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~------~~~-~~~V~~laWSpDg~~LAs~~~d 293 (1196)
...++++.-+.....|.||+.|+ +|++|+.. +......... .|+ ..+|-+|+ -|...|..|+..
T Consensus 156 tDYvH~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp 227 (325)
T KOG0649|consen 156 TDYVHSVVGRNANGQILSGAEDG------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP 227 (325)
T ss_pred cceeeeeeecccCcceeecCCCc------cEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCC
Confidence 99999999977777788888864 69999943 3322211100 111 22454444 456678877666
Q ss_pred CCcceEEEEEecCC
Q 000992 294 EEYDSVKICFFSNN 307 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~ 307 (1196)
. +-||++...
T Consensus 228 ~----lslwhLrss 237 (325)
T KOG0649|consen 228 K----LSLWHLRSS 237 (325)
T ss_pred c----eeEEeccCC
Confidence 5 889987654
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.0017 Score=79.90 Aligned_cols=162 Identities=12% Similarity=0.026 Sum_probs=87.4
Q ss_pred EEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC
Q 000992 278 LKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME 357 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d 357 (1196)
=+|+|.+..+|.|+.++ .|-+.+.+- -+.+.+...+.+.....|+-.+..-|.....|++
T Consensus 29 sc~~s~~~~vvigt~~G---~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~-------------- 88 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADG---RVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ-------------- 88 (933)
T ss_pred eEEcCCCceEEEeeccc---cEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCC--------------
Confidence 46999999999999998 444333221 1112222222222223344333221222111111
Q ss_pred CeeEEEEcCCEEEEeecccc-CCCCCceeeee---cC-----CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 358 NSTALVIDGSKILVTPLSLS-LMPPPMYLFSL---KF-----PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 358 ~~~v~viDg~~l~lt~l~~~-~vpppm~~~~l---~~-----~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
+ ....|++|.+... .--||.|.+++ ++ +.++.+++.|.+- +.+|+|-.||.|.++.-+-....
T Consensus 89 -~-----np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 89 -G-----NPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred -C-----CceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhcc
Confidence 0 0015677776543 22237776322 32 3467889999997 89999999999999976531111
Q ss_pred ccccCCceeeeeecccccCCcEEEEEEecCCeE-EEEEecCCCCceEEEEe
Q 000992 429 EDLEGTEFVVEACISETAFGSVIHLIWLGSHLL-LSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 429 ~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~l-la~~~~~~~~~~~~~~~ 478 (1196)
|..... . ....+.|..+++..+++. |.++.- ++|.++++
T Consensus 161 ----gsr~~~--~--~~~~~pITgL~~~~d~~s~lFv~Tt---~~V~~y~l 200 (933)
T KOG2114|consen 161 ----GSRQDY--S--HRGKEPITGLALRSDGKSVLFVATT---EQVMLYSL 200 (933)
T ss_pred ----ccceee--e--ccCCCCceeeEEecCCceeEEEEec---ceeEEEEe
Confidence 111111 1 112347899999999876 333322 56677766
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=4.2e-05 Score=85.89 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=153.5
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG 97 (1196)
.++.++|++++..||++..+ +.|..+......+..+ +......++....-|+.+++|+.|.+|. ..|
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt---------~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT---------FLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------EeeccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence 78899999999999999553 4555444410223321 2222344566679999999999998885 568
Q ss_pred cEEEEECCC-CeEE-E--eeeecCc----------EEEEEECCCCCEEEEEe-CCceEEEEeccCceeeeeecccccCcc
Q 000992 98 LLLLHSVDG-NATE-V--VGRVEGG----------VRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 98 ~I~lw~~~~-~~~e-~--vg~~~~~----------I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
.|.++-++. |.+. . +-.|.++ +-++.+.|||++|++.. +...|.++.-+ +-.+....
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-----dg~L~~~~--- 183 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-----DGKLTPAD--- 183 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc-----cCcccccc---
Confidence 888887754 3321 1 1123444 88999999999999884 23355554322 11111111
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC--CcEEE--E---ec-c--CCCceeEEEEcC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQA--S---SE-L--KAFMGAVLEWMP 232 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~--G~l~~--~---~e-~--~~~~v~slawsP 232 (1196)
+..+ ....+-..|.|+|+|++.= +-. .-+.+|-||..+. |++.. + +. . ...+...|..+|
T Consensus 184 ---~~~v-~~G~GPRHi~FHpn~k~aY-~v~-----EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 184 ---PAEV-KPGAGPRHIVFHPNGKYAY-LVN-----ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ---cccc-CCCCCcceEEEcCCCcEEE-EEe-----ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 0011 1123447899999999654 332 1358999998754 33221 1 11 1 223557899999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEe--CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e--~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
||++|-++-+. ...|..|. .+|-+..-+.....+...-....++|+|++|+++..+. +.|.++.++.
T Consensus 254 dGrFLYasNRg-----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s--d~i~vf~~d~ 322 (346)
T COG2706 254 DGRFLYASNRG-----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS--DNITVFERDK 322 (346)
T ss_pred CCCEEEEecCC-----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC--CcEEEEEEcC
Confidence 99999887664 23677775 34322211111111122367899999999999999876 4677877764
No 254
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.66 E-value=6.5e-08 Score=115.95 Aligned_cols=256 Identities=15% Similarity=0.085 Sum_probs=174.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.|..+|.-+-.|+.+|+|.-+..|.. .+... . ++.++| .+.|++++-+...-++|++|.|.-|++
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~--et~~~---l----As~rGh----s~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSM--ETARC---L----ASCRGH----SGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeec--cchhh---h----ccCCCC----ccccchhccchhhhhhhhcccCceEEE
Confidence 4778889999999999999998888875 33221 1 225566 468999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc-Cc-cccc---c---Cccc--
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-EG-FDVH---E---PELS-- 170 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~-~~-~~Vs---~---tqf~-- 170 (1196)
|.+.++.. .++-.|.+.|++++|||-. +.+.|||+.+|+..|+++.-.+-.... .. ..++ + ..|.
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99988754 4555579999999999985 678899999998778776544222111 11 1111 1 1111
Q ss_pred -----cCCCCeEEEEEccCCceEEEeeccccc-----cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEE-E
Q 000992 171 -----SSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA-A 239 (1196)
Q Consensus 171 -----~~~~~v~~isWspDG~~lAsvss~d~~-----~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IA-s 239 (1196)
........++|+..+-.|++.++ +.. +..+..+++|+..+|.+...+.+|...+..+.++|=...|| +
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ss-d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSS-DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccc-cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 11123345667766666663221 110 12456789999999999999999999999999999888776 4
Q ss_pred EecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 240 VYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
++.|+ ...+|+. .|-....+. .+ .+.+..-+||+||+.+|..-.-+ .++|..++..
T Consensus 414 ag~dg------st~iwdi~eg~pik~y~--~g-h~kl~d~kFSqdgts~~lsd~hg---ql~i~g~gqs 470 (1113)
T KOG0644|consen 414 AGYDG------STIIWDIWEGIPIKHYF--IG-HGKLVDGKFSQDGTSIALSDDHG---QLYILGTGQS 470 (1113)
T ss_pred ccCCC------ceEeeecccCCcceeee--cc-cceeeccccCCCCceEecCCCCC---ceEEeccCCC
Confidence 45543 4556763 233222221 12 34677889999999998765544 5777766543
No 255
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.66 E-value=1.1e-06 Score=105.12 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=184.7
Q ss_pred HHHHHHHHhhcChHHHHHHHHhccChhH--HHHHHH-HhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHH
Q 000992 879 EEALKHLLWLADSEAVYEAALGLYDLNL--AAIVAL-NSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIV 955 (1196)
Q Consensus 879 ~~al~~l~~L~d~~~Ly~~ALg~yD~~l--al~vAq-~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~ 955 (1196)
-++|+|...+-+.-..|+.|||.+.-.+ ...|.. -+|.|- -||+-.|.+.+...|++.|..|+|...+++.|..
T Consensus 864 ~e~lrrkf~Id~yl~~ye~ALghl~E~~n~~~Ev~~yi~~hdl---y~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~ 940 (1243)
T COG5290 864 LEALRRKFSIDNYLSIYESALGHLNEDLNVIREVMKYICRHDL---YDFLLLLYRYDGELQKFKINIFAGNLVDNLYHIS 940 (1243)
T ss_pred hHHHHhHhchhhhHHHHHHHHHhhHhHHHHHHHHHHHHHhccc---hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHH
Confidence 3779999999999999999999998655 444444 456666 4777788888899999999999999888888877
Q ss_pred HcCC----CcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHc
Q 000992 956 SMGD----SYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS 1029 (1196)
Q Consensus 956 ~~g~----~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~ 1029 (1196)
++-. -..-||+..++.. .+|.+++.+. ..+.+ .+..|+-|.+ .+...+.++|+-+++...|..+
T Consensus 941 aa~aye~~gK~~Ea~gay~sA-~mwrec~si~~q~~~~e----~~~~AE~L~S-----~l~ve~R~~~da~~i~l~yl~N 1010 (1243)
T COG5290 941 AAKAYEVEGKYIEAHGAYDSA-LMWRECGSISTQEKGYE----FNLCAELLPS-----DLLVEFRKAGDAEKILLTYLEN 1010 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHhhhcchH----HHHHHHhhhh-----hHHHHHHHhcCHHHHHHHHHhC
Confidence 6521 1157888888888 8888888887 34444 5566676655 2555566677777777777777
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhH
Q 000992 1030 GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109 (1196)
Q Consensus 1030 g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~ 1109 (1196)
-.|..|+.+-.- .++ ...+..++..+.+.-++-+|..+-+.|++.+|.|.++|.+.+--.+++|++...+.
T Consensus 1011 ~~eava~~ckgs-~y~----ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~---- 1081 (1243)
T COG5290 1011 LYEAVAMDCKGS-EYR----EAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKC---- 1081 (1243)
T ss_pred HHHHHHHHcccc-cch----HHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 777666653321 222 34555666667666778889999999999999999999999999999998876542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1110 TKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146 (1196)
Q Consensus 1110 e~v~~~l~e~~~~~~e~l~~~~~~~~~~~~Rl~~lR~ 1146 (1196)
..|..-+...+..+.+.|.+.++.+|..|+..+-+
T Consensus 1082 --e~p~a~~~~~~e~~t~dDvs~a~~~~st~~s~~t~ 1116 (1243)
T COG5290 1082 --EMPEAREILREELLTLDDVSEAFVKYSTRLSALTE 1116 (1243)
T ss_pred --cChHHHHhhhhhhcCccchhhhhhhhhhHHHHHHH
Confidence 36666677777788899999999999999877755
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.66 E-value=3e-06 Score=99.70 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=107.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCc
Q 000992 86 EKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEG 161 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~ 161 (1196)
|...|+.|...|.|.+|+..++++. ..|.|.++|.++.|+.+-..|=++++|..+..|.- ....+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--------- 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--------- 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee---------
Confidence 5578899999999999999998874 44789999999999999999999999999988762 2222211
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC-----CCe
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GAN 236 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd-----G~~ 236 (1196)
|+.....+.++..+|||+.++ +++ ++|++||.++++...++++|.+.+++++|--+ |.+
T Consensus 140 -------~~~~~~~~~sl~is~D~~~l~-~as--------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 140 -------WKEQKPLVSSLCISPDGKILL-TAS--------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred -------eccCCCccceEEEcCCCCEEE-ecc--------ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 112224568999999999999 676 89999999999999999999999999999888 777
Q ss_pred EEEEe
Q 000992 237 IAAVY 241 (1196)
Q Consensus 237 IAs~s 241 (1196)
+.++-
T Consensus 204 vLssa 208 (541)
T KOG4547|consen 204 VLSSA 208 (541)
T ss_pred eeecc
Confidence 66553
No 257
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=6.2e-05 Score=83.81 Aligned_cols=219 Identities=18% Similarity=0.208 Sum_probs=137.0
Q ss_pred eEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc-cCCCEEEEEECCCcEEE
Q 000992 24 QFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~s-pd~~~La~as~dG~I~l 101 (1196)
.+.+||+.++.||++.- .+.|+.|+. ..+... + +.. ....++.+. ++ ..|.++..+| +.+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~--~~~~~~--~---------~~~---~~~~G~~~~~~~-g~l~v~~~~~-~~~ 64 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDP--DTGEVE--V---------IDL---PGPNGMAFDRPD-GRLYVADSGG-IAV 64 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET--TTTEEE--E---------EES---SSEEEEEEECTT-SEEEEEETTC-EEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEEC--CCCeEE--E---------Eec---CCCceEEEEccC-CEEEEEEcCc-eEE
Confidence 57899998888998865 678999998 444331 1 111 238888898 66 5555555544 556
Q ss_pred EECCCCeEEEeee------ecCcEEEEEECCCCCEEEEEeCC--------ceEEEEeccCceeeeeecccccCccccccC
Q 000992 102 HSVDGNATEVVGR------VEGGVRFISPSPDGDLLGVTTGF--------GQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 102 w~~~~~~~e~vg~------~~~~I~~~awSPDg~~LA~~s~d--------~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
+|..+++++.+-. .....+.++++|||.+.++-+.. |.|..++.+... . ......
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~-~~~~~~--------- 133 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-T-VVADGL--------- 133 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEE-E-EEEEEE---------
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeE-E-EEecCc---------
Confidence 6998887763222 23468899999999988777654 345444433111 1 111100
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCc-EEE-----EeccCCCceeEEEEcCCCCeEEEE
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGT-LQA-----SSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~-l~~-----~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
..-..|+|+|||+.|. ++. +..+.|..++.+ ++. +.. ......+....+++.++|++.++.
T Consensus 134 ------~~pNGi~~s~dg~~ly-v~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 134 ------GFPNGIAFSPDGKTLY-VAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp ------SSEEEEEEETTSSEEE-EEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred ------ccccceEECCcchhee-ecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 1337899999999775 332 234677777763 232 221 122222346789999999977664
Q ss_pred ecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEc
Q 000992 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVR 292 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~ 292 (1196)
-. ...|..++.+|.......++. ..+.+++| .||.+.|-+.+.
T Consensus 202 ~~------~~~I~~~~p~G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 202 WG------GGRIVVFDPDGKLLREIELPV---PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ET------TTEEEEEETTSCEEEEEE-SS---SSEEEEEEESTTSSEEEEEEB
T ss_pred cC------CCEEEEECCCccEEEEEcCCC---CCEEEEEEECCCCCEEEEEeC
Confidence 43 357999999998877666652 26899999 588888877653
No 258
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=2.3e-05 Score=83.10 Aligned_cols=256 Identities=14% Similarity=0.160 Sum_probs=153.0
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
+-.-+|.+-...++.++.+++|....+++--.... .=+..+.-.++.. .+.|.+++|. ...|.+++ ||.|+=
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence 33446667677788888888888777742111000 0000011112222 4678999998 34566654 699998
Q ss_pred EECCC-------Ce-EE-----Eeeeec-CcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCcccccc
Q 000992 102 HSVDG-------NA-TE-----VVGRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 102 w~~~~-------~~-~e-----~vg~~~-~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
|.-.. ++ .+ -++..+ ..|+++..-|....|.++++|+.+.-|+.. +....
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r--------------- 150 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR--------------- 150 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---------------
Confidence 75432 11 11 222222 359999999999999999999999776532 21111
Q ss_pred CccccCCCCeEEEEE-ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC----------ceeEEEEcCCCC
Q 000992 167 PELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF----------MGAVLEWMPSGA 235 (1196)
Q Consensus 167 tqf~~~~~~v~~isW-spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~----------~v~slawsPdG~ 235 (1196)
.|++|++.+.++.= +..|+.|. ++ +|+++||||..+++..++.++.+. ++.+++- +..
T Consensus 151 -~~rGHtDYvH~vv~R~~~~qils--G~------EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed 219 (325)
T KOG0649|consen 151 -EYRGHTDYVHSVVGRNANGQILS--GA------EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED 219 (325)
T ss_pred -EEcCCcceeeeeeecccCcceee--cC------CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc
Confidence 24578888899888 45666553 54 589999999999999998876432 3334432 333
Q ss_pred eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 236 NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
++.+|+. ..+.+|.. .-.....|.++ +.|..+.|-.| .+|+. +..+ .|+-|+.+. .++..
T Consensus 220 WlvCGgG-------p~lslwhLrsse~t~vfpip----a~v~~v~F~~d-~vl~~-G~g~---~v~~~~l~G---vl~a~ 280 (325)
T KOG0649|consen 220 WLVCGGG-------PKLSLWHLRSSESTCVFPIP----ARVHLVDFVDD-CVLIG-GEGN---HVQSYTLNG---VLQAN 280 (325)
T ss_pred eEEecCC-------CceeEEeccCCCceEEEecc----cceeEeeeecc-eEEEe-cccc---ceeeeeecc---EEEEe
Confidence 6666654 35778873 33333334433 35777777544 34444 3333 699999876 34444
Q ss_pred EEEecCCcEEEEEccC
Q 000992 315 IRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 315 l~~~~~~~~~v~Wsp~ 330 (1196)
+.+.+..-.+..|+..
T Consensus 281 ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 281 IPVESTACYSASWQTS 296 (325)
T ss_pred ccCCccceeeecccCC
Confidence 5443323366667653
No 259
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.61 E-value=3.4e-06 Score=105.52 Aligned_cols=206 Identities=9% Similarity=0.056 Sum_probs=123.2
Q ss_pred CCEEEEEEccCC-CEEEEEECCCcEEEEECCC-----C--eEEE-eeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc
Q 000992 76 DSITAFDYLMEK-EALIVGTSSGLLLLHSVDG-----N--ATEV-VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1196)
Q Consensus 76 ~~v~~v~~spd~-~~La~as~dG~I~lw~~~~-----~--~~e~-vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~ 146 (1196)
..|..++-+++. ..+++||.||+|++||... + +.+. ..-..+.+.++..-+.|+.+|+++.||.|.++..+
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 345566666554 9999999999999999752 1 1221 11134678999999999999999999999887543
Q ss_pred Cceeeee---e-cccccCccccccCccccCCCCeE-EEEEcc-CCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEe-
Q 000992 147 WDLLYEN---P-LEELAEGFDVHEPELSSSFSFKS-PISWRG-DGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASS- 218 (1196)
Q Consensus 147 ~d~~~~~---~-l~~~~~~~~Vs~tqf~~~~~~v~-~isWsp-DG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~- 218 (1196)
-...... . ..+.. ..++.++ .-++-. ++. .++ .++ .-+.|-.||...-.-.++.
T Consensus 1129 ~~~~~~~~~~~~ri~n~-----------~~~g~vv~m~a~~~~~~S~~lv-y~T------~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNL-----------KKDGVVVSMHAFTAIVQSHVLV-YAT------DLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred ccccccceeeeeecccc-----------cCCCceEEeecccccccceeEE-EEE------eccceEEecchhhhhHHhhh
Confidence 2111000 0 00000 0011122 222322 222 344 333 3577889997444333333
Q ss_pred -ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEcc---CCCeeEEEEcc
Q 000992 219 -ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNC---MSDLLAAVVRF 293 (1196)
Q Consensus 219 -e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSp---Dg~~LAs~~~d 293 (1196)
++..|.+++++-+|-|++++.|+. ++.+.+||. -+.....+. -|+...+..+.-.| ......+++..
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts------~G~l~lWDLRF~~~i~sw~--~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTS------RGQLVLWDLRFRVPILSWE--HPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecC------CceEEEEEeecCceeeccc--CcccCCcceEEeeccCCCCceEEEeccc
Confidence 346789999999999999999976 456999993 222222222 22334566666554 34455555542
Q ss_pred CCcceEEEEEecCCE
Q 000992 294 EEYDSVKICFFSNNH 308 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~ 308 (1196)
+ .+-|-+|++.+++
T Consensus 1263 ~-~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1263 S-NNEVSTWNMETGL 1276 (1431)
T ss_pred C-CCceeeeecccCc
Confidence 2 1259999998875
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.61 E-value=1.3e-05 Score=92.83 Aligned_cols=350 Identities=12% Similarity=0.129 Sum_probs=195.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG---- 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG---- 97 (1196)
+....++.+.|--|++....+ |..|.- ..+.. +..+. ...|..+.|||.+++|.+=+.-+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g--~~~~~----------l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAG-VECWGG--PSKAK----------LVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred chhheeecCcchheehhhccc-eEEccc--cchhh----------eeeee---cCCceecccCcccceeeeeccCCccCh
Confidence 455677888777666655555 888876 33321 22221 35799999999999998754333
Q ss_pred -----------cEEEEECCCCeEE-EeeeecCc--EE-EEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCcc
Q 000992 98 -----------LLLLHSVDGNATE-VVGRVEGG--VR-FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 98 -----------~I~lw~~~~~~~e-~vg~~~~~--I~-~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
.+.+||..++.+- ........ .+ -+.||-|..++|-..++ .+.+... .+-+.+.+.+..
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-sl~i~e~-t~n~~~~p~~~l---- 171 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-SLYIHEI-TDNIEEHPFKNL---- 171 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC-eEEEEec-CCccccCchhhc----
Confidence 3889999887653 22222333 55 78999999999988665 4544321 111222222211
Q ss_pred ccccCccccCCCCeEEEEEccCCc--eEEEeeccccc-cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGK--YFATLSEFCNS-SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~--~lAsvss~d~~-~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
...++...+|||-|. -||+ .-++ ....++++||..--+..+.+-.-..-.-..+-|.+.|+.|..
T Consensus 172 ---------r~~gi~dFsisP~~n~~~la~---~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 172 ---------RPVGILDFSISPEGNHDELAY---WTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLV 239 (561)
T ss_pred ---------cccceeeEEecCCCCCceEEE---EccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEE
Confidence 124678999999754 4552 2222 135789999998655555432211112268999999998765
Q ss_pred Eec-CC-C---CCCCCeEEEEeCCCeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 240 VYD-RK-S---ENKCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 240 ~s~-d~-~---~~~~~~V~~~e~nGl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
--. +. + .=....+-++... ++.++. ...+.|.+.+|+|+|+..|+.+.-.+ .++-++++...-
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p-a~~s~~~lr~Nl---- 309 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP-ASVSVFDLRGNL---- 309 (561)
T ss_pred EEEEeeecccceeccceEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccc-cceeecccccce----
Confidence 322 10 0 0001223333321 222331 12467999999999999998773221 156677765321
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEec--CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTL--DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~--~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
...+++.....+.|+|.+...|..+.. .|.+. +|+.. |+...++.|...
T Consensus 310 -~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~----i~~~~-----------~rf~~~~~~~~~------------- 360 (561)
T COG5354 310 -RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIE----IFDPA-----------GRFKVAGAFNGL------------- 360 (561)
T ss_pred -EEecCCcccccccccCcccEEEEecCCccccceE----EeccC-----------CceEEEEEeecC-------------
Confidence 112222233667788887664433221 22222 23221 222222222111
Q ss_pred CCCEEEEEEecCCCCCEEEEE------ECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEE
Q 000992 391 PTAVTEMAFYSKSSKNCLAAI------LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464 (1196)
Q Consensus 391 ~~~V~~Vafspdg~~~~lAs~------~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~ 464 (1196)
+-.-+.||||| +.+-+. -.|+.++||+..+.. ...+.++.|-|.|++.-+
T Consensus 361 --n~s~~~wspd~--qF~~~~~ts~k~~~Dn~i~l~~v~g~~--------------------~fel~~~~W~p~~~~~tt 416 (561)
T COG5354 361 --NTSYCDWSPDG--QFYDTDTTSEKLRVDNSIKLWDVYGAK--------------------VFELTNITWDPSGQYVTT 416 (561)
T ss_pred --CceEeeccCCc--eEEEecCCCcccccCcceEEEEecCch--------------------hhhhhhccccCCccccee
Confidence 11234588998 555443 247899999987421 124667788888877655
Q ss_pred EecC
Q 000992 465 SHHG 468 (1196)
Q Consensus 465 ~~~~ 468 (1196)
.+.+
T Consensus 417 sSs~ 420 (561)
T COG5354 417 SSSC 420 (561)
T ss_pred eccC
Confidence 5443
No 261
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.61 E-value=2e-07 Score=111.81 Aligned_cols=266 Identities=11% Similarity=0.108 Sum_probs=171.2
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
+.| |-+.|.|+.|.--|..+.+++.|..|++|+.. ++.++.... ||...+..++-+....++|
T Consensus 186 Llg-H~naVyca~fDrtg~~Iitgsdd~lvKiwS~e----t~~~lAs~r-----------Ghs~ditdlavs~~n~~ia- 248 (1113)
T KOG0644|consen 186 LLG-HRNAVYCAIFDRTGRYIITGSDDRLVKIWSME----TARCLASCR-----------GHSGDITDLAVSSNNTMIA- 248 (1113)
T ss_pred HHh-hhhheeeeeeccccceEeecCccceeeeeecc----chhhhccCC-----------CCccccchhccchhhhhhh-
Confidence 455 46889999999999999999999999998732 333443333 6777788899888888888
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-- 268 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-- 268 (1196)
.+| .|..||||-..+|.+++.+.+|.|.|++|+|||-- +++.| .++++|+.. +....|.-+
T Consensus 249 aaS------~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~d------gt~~~wd~r-~~~~~y~prp~ 311 (1113)
T KOG0644|consen 249 AAS------NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDD------GTCRIWDAR-LEPRIYVPRPL 311 (1113)
T ss_pred hcc------cCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCC------CceEecccc-ccccccCCCCC
Confidence 565 47999999999999999999999999999999965 55554 469999854 111222111
Q ss_pred -cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-------------cEEEEEccCCCce
Q 000992 269 -EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-------------GIRFMWHPTKPLQ 334 (1196)
Q Consensus 269 -~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-------------~~~v~Wsp~~~~~ 334 (1196)
......+-++-|-..|.-.++++.|+ .-+.|...-..|.-. -+.|.... .....|.--.+..
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~---ea~n~e~~~l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDG---EARNHEFEQLAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred CcccccceeeeeccccccccccccCCc---ccccchhhHhhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 11124577888888888889998888 555665543333100 11111100 0223343322222
Q ss_pred EEEEecCCcEEEEEEEEeeecCCC--eeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE
Q 000992 335 LICWTLDGQITTYNFIWTTAVMEN--STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL 412 (1196)
Q Consensus 335 L~~~~~~g~~~~~~~~~~~~~~d~--~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~ 412 (1196)
+++... +....++-++.|.+. .+.+.-||+++ +|++-.+ .||-.+.+.| ..+.+-.||+|| +.++...
T Consensus 388 ~H~l~g---hsd~~yvLd~Hpfn~ri~msag~dgst~-iwdi~eg---~pik~y~~gh-~kl~d~kFSqdg--ts~~lsd 457 (1113)
T KOG0644|consen 388 LHNLMG---HSDEVYVLDVHPFNPRIAMSAGYDGSTI-IWDIWEG---IPIKHYFIGH-GKLVDGKFSQDG--TSIALSD 457 (1113)
T ss_pred hhhhcc---cccceeeeeecCCCcHhhhhccCCCceE-eeecccC---Ccceeeeccc-ceeeccccCCCC--ceEecCC
Confidence 222221 112333444444332 23455577765 5665432 3666666664 345677899999 8888887
Q ss_pred CCCcEEEEeCCC
Q 000992 413 SDGCLCVVDLPA 424 (1196)
Q Consensus 413 ~dg~v~lw~~~~ 424 (1196)
.-|.+.|.....
T Consensus 458 ~hgql~i~g~gq 469 (1113)
T KOG0644|consen 458 DHGQLYILGTGQ 469 (1113)
T ss_pred CCCceEEeccCC
Confidence 778888887643
No 262
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.60 E-value=2.7e-06 Score=93.38 Aligned_cols=147 Identities=13% Similarity=0.217 Sum_probs=100.4
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEE-ECCCcEEEEECCCCe
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVG-TSSGLLLLHSVDGNA 108 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~~ 108 (1196)
..+.|.++.+.. |+.|+.+ .+.-+ +..+...+ ..++-++....+...||.- ..-|.|.|.++...+
T Consensus 103 ~r~riVvvl~~~-I~VytF~--~n~k~---------l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 103 RRDRIVVVLENK-IYVYTFP--DNPKL---------LHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred cCCeEEEEecCe-EEEEEcC--CChhh---------eeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 456777777766 8888862 12111 11111112 2346666666666666653 456999999987644
Q ss_pred E---EEeeeecCcEEEEEECCCCCEEEEEeCCceEE-EEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEcc
Q 000992 109 T---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 109 ~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~-l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
. .++.+|++.|.|++.+-||.+||++|..||++ +|+ .++..+.|..-..+. ..+.+|+|||
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~--------------A~iy~iaFSp 236 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR--------------ADIYCIAFSP 236 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch--------------heEEEEEeCC
Confidence 4 57888999999999999999999999999975 443 344444444332221 3579999999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECC
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERD 210 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~ 210 (1196)
|+.+|| ++| ..+|+.|+...
T Consensus 237 ~~s~La-vsS------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 237 NSSWLA-VSS------DKGTLHIFSLR 256 (346)
T ss_pred CccEEE-EEc------CCCeEEEEEee
Confidence 999999 887 35899999763
No 263
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.60 E-value=3e-05 Score=91.26 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=102.6
Q ss_pred ccCCCEEEEE---------ECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 84 LMEKEALIVG---------TSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 84 spd~~~La~a---------s~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
|||++.++++ +..+++.+||..++++..+......+..+.|||||+.||.+.+ ++|.+.+.... .+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~--~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATG--QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTS--EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec-CceEEEECCCC--CeEE
Confidence 6888888874 3457899999999888755544677999999999999999986 47877643222 2233
Q ss_pred cccccCcc-------ccc-cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC--Cc
Q 000992 155 LEELAEGF-------DVH-EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA--FM 224 (1196)
Q Consensus 155 l~~~~~~~-------~Vs-~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~--~~ 224 (1196)
+..+.... +|- |..| +.-..+-|||||++|| ....| ++.|+.+.. .....+.. ..
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~----~~~~~~~WSpd~~~la-~~~~d-----~~~v~~~~~-----~~~~~~~~~yp~ 142 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVF----DRRSAVWWSPDSKYLA-FLRFD-----EREVPEYPL-----PDYSPPDSQYPE 142 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTS----SSSBSEEE-TTSSEEE-EEEEE------TTS-EEEE-----EEESSSTESS-E
T ss_pred eccccceeEEcCccceecccccc----ccccceEECCCCCEEE-EEEEC-----CcCCceEEe-----eccCCccccCCc
Confidence 33222000 010 1112 2235799999999999 45444 344444332 00000000 01
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCCcc--eE
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYD--SV 299 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~--~V 299 (1196)
+..+.+---|.-.+ ...+.+++..+....+..++ .....-+..+.|++|++.|++...++..+ .+
T Consensus 143 ~~~~~YPk~G~~np----------~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 143 VESIRYPKAGDPNP----------RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp EEEEE--BTTS-------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred ccccccCCCCCcCC----------ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 23333322232221 12355567655443333333 22345688999999999555544444333 55
Q ss_pred EEEEecC
Q 000992 300 KICFFSN 306 (1196)
Q Consensus 300 ~lW~~~n 306 (1196)
.+.+..+
T Consensus 213 ~~~d~~t 219 (353)
T PF00930_consen 213 VLCDAST 219 (353)
T ss_dssp EEEEECT
T ss_pred EEEECCC
Confidence 5666644
No 264
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.59 E-value=2.5e-07 Score=105.26 Aligned_cols=196 Identities=16% Similarity=0.018 Sum_probs=152.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
-.+..+.|+.+|+.|++++..|-|...|..++.+.+--.+...|..+.|=...+++|++-.. -+.+++..+..+..+.-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKK-YVYVYDNNGTELHCLKR 208 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhc-eEEEecCCCcEEeehhh
Confidence 46789999999999999999999999999988765333345679999999999999988654 56777665543332221
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
...+..+.|-|---+|| .++ ..+-++--|..+|++.+.+....|.+..++=+|-..
T Consensus 209 -----------------~~~v~rLeFLPyHfLL~-~~~------~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 209 -----------------HIRVARLEFLPYHFLLV-AAS------EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred -----------------cCchhhhcccchhheee-ecc------cCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 13567888999887777 343 347888889999999988877778888899999988
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|-.|-. .++|.+|..|-.. .-.. .-+.+.|.+||+.++|.++|+++.|+ .|+|||+.++.
T Consensus 265 Vih~Ghs------nGtVSlWSP~ske---PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr---~~kIWDlR~~~ 326 (545)
T KOG1272|consen 265 VIHLGHS------NGTVSLWSPNSKE---PLVKILCHRGPVSSIAVDRGGRYMATTGLDR---KVKIWDLRNFY 326 (545)
T ss_pred eEEEcCC------CceEEecCCCCcc---hHHHHHhcCCCcceEEECCCCcEEeeccccc---ceeEeeecccc
Confidence 8888765 3579999987421 1011 22457899999999999999999999 89999999863
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.58 E-value=6.4e-07 Score=110.79 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=150.4
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeec----CcEEEEEECCCCCEEEEEeCCceEEEEeccCcee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVE----GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~----~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
++|..-.++-+...+++++.+..+.+|+...+.+ ..+++-+ ....-+-+|++.=++|+++--+.|++|....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--- 164 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--- 164 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---
Confidence 5666677788889999999999999999876432 1122111 1223355788988999999999999874221
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-EeccCCCceeEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLE 229 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-~~e~~~~~v~sla 229 (1196)
.. +++ ...+|.+.+.++.||-||.|+||+ | .||++|+|+.++++... +.=+|...++.+.
T Consensus 165 dn---------~p~---~l~GHeG~iF~i~~s~dg~~i~s~-S------dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 165 DN---------KPI---RLKGHEGSIFSIVTSLDGRYIASV-S------DDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred cC---------Ccc---eecccCCceEEEEEccCCcEEEEE-e------cCcceeeeecccccccCcccccccceeEEEE
Confidence 11 111 123788999999999999999954 4 48999999998887776 5567999999999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+.|+ .|++++.| -+.++|.-||.....+ .++....++.++-.++.-++.+++.|+ ++++|+..+
T Consensus 226 ~~~n--~i~t~ged------ctcrvW~~~~~~l~~y--~~h~g~~iw~~~~~~~~~~~vT~g~Ds---~lk~~~l~~ 289 (967)
T KOG0974|consen 226 FLPN--RIITVGED------CTCRVWGVNGTQLEVY--DEHSGKGIWKIAVPIGVIIKVTGGNDS---TLKLWDLNG 289 (967)
T ss_pred eccc--eeEEeccc------eEEEEEecccceehhh--hhhhhcceeEEEEcCCceEEEeeccCc---chhhhhhhc
Confidence 9999 89999986 4688999898766533 333345699999999999999999999 999999765
No 266
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=6.4e-07 Score=104.16 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=135.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
..-+++++.-+.-||++.....+|..++ .++-. |. ||.. .+.++.|...+.-..||+|+.+|.|-
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNL--EqGrf----------L~--P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNL--EQGRF----------LN--PFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEc--ccccc----------cc--ccccccccceeeeecCccceEEecccCceEE
Confidence 4567888888888999877667999999 55543 21 1111 36899999999999999999999999
Q ss_pred EEECCCC----eEE---EeeeecCc-----EEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCc
Q 000992 101 LHSVDGN----ATE---VVGRVEGG-----VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 101 lw~~~~~----~~e---~vg~~~~~-----I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
.||+.+. .++ .|.++.++ |++++|+-||=.+|+||.+|.|.+.+ .-+..++-..++
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD----LRa~~pl~~kdh-------- 268 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD----LRASKPLLVKDH-------- 268 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE----cccCCceeeccc--------
Confidence 9999763 333 23334444 99999999999999999999998864 223333222221
Q ss_pred cccCCCCeEEEEEccC--CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecC
Q 000992 169 LSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 169 f~~~~~~v~~isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
+..-.|..+.|-+. +..++ + . ..+.+||||..+|+.....|+..+ +..+++=|++-++-++...
T Consensus 269 --~~e~pi~~l~~~~~~~q~~v~--S-~-----Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 269 --GYELPIKKLDWQDTDQQNKVV--S-M-----DKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANES 334 (703)
T ss_pred --CCccceeeecccccCCCceEE--e-c-----chHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCC
Confidence 11235688999554 44555 2 2 348999999999999999888766 6899999999888887653
No 267
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.54 E-value=1.9e-06 Score=102.89 Aligned_cols=193 Identities=13% Similarity=0.049 Sum_probs=121.3
Q ss_pred CCEEEEEEccCCCEEEEE---ECC-CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCcee
Q 000992 76 DSITAFDYLMEKEALIVG---TSS-GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLL 150 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a---s~d-G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~ 150 (1196)
..+..=.|+|+++.++-. ... ..|.++++++++-+.+....+.-..-+|||||+.||.++ .||+.-+|.-+.+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 456777899999987644 222 358999999987776666666677899999999999986 466655554332222
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw 230 (1196)
....+.... +. -..-+|+|||++++++++.. +.-.|-+.|++.+..........+. ..-.|
T Consensus 273 ~~~~Lt~~~-----------gi---~~~Ps~spdG~~ivf~Sdr~----G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~ 333 (425)
T COG0823 273 NLPRLTNGF-----------GI---NTSPSWSPDGSKIVFTSDRG----GRPQIYLYDLEGSQVTRLTFSGGGN-SNPVW 333 (425)
T ss_pred cceecccCC-----------cc---ccCccCCCCCCEEEEEeCCC----CCcceEEECCCCCceeEeeccCCCC-cCccC
Confidence 211122111 11 13789999999999655432 3446778888555444433322222 37789
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
||||++||..+...+ ...|...+.+.-. .. .+. .......-+|+|||+.+...+...
T Consensus 334 SpdG~~i~~~~~~~g---~~~i~~~~~~~~~~~~--~lt--~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 334 SPDGDKIVFESSSGG---QWDIDKNDLASGGKIR--ILT--STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCCCCEEEEEeccCC---ceeeEEeccCCCCcEE--Ecc--ccccCCCCCcCCCCceEEEeccCC
Confidence 999999999885422 2556666643211 11 121 122344678999999887766544
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.54 E-value=9.5e-07 Score=97.35 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=132.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC---CeEE---Eeee------------ecCcEEEEEECCCCCE--EEEE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG---NATE---VVGR------------VEGGVRFISPSPDGDL--LGVT 134 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~---~~~e---~vg~------------~~~~I~~~awSPDg~~--LA~~ 134 (1196)
.+-|.+|.|..+|+.||+|-.+|.|.++..+. ++.. ...+ ++..|+.++|-++|+. ..+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35689999999999999999999999987642 1111 1111 2357999999999874 5566
Q ss_pred eCCceEEEEeccCceeee--eecccccCcccccc------C------------cc-ccCCCCeEEEEEccCCceEEEeec
Q 000992 135 TGFGQILVMTHDWDLLYE--NPLEELAEGFDVHE------P------------EL-SSSFSFKSPISWRGDGKYFATLSE 193 (1196)
Q Consensus 135 s~d~tV~l~~~~~d~~~~--~~l~~~~~~~~Vs~------t------------qf-~~~~~~v~~isWspDG~~lAsvss 193 (1196)
+.|+||++|...-..... ..+........++. + .| .+|+-.+.+|+...|+++|. ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 889999999521110000 00000000111110 0 01 16778899999999999998 44
Q ss_pred cccccCCCCEEEEEECC-CCcEEEEe--ccC-----CCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCC----e
Q 000992 194 FCNSSKLHKRLKVWERD-SGTLQASS--ELK-----AFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNG----L 260 (1196)
Q Consensus 194 ~d~~~~~d~~irVWd~~-~G~l~~~~--e~~-----~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nG----l 260 (1196)
.|=.|-+|+.+ +.+.-.+- .|+ ...+++--|+|.-. +++-++. +++|++.+.-- .
T Consensus 183 ------DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS------KGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 183 ------DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS------KGTIRLCDMRQSALCD 250 (433)
T ss_pred ------cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC------CCcEEEeechhhhhhc
Confidence 25689999984 22222211 222 22357888999754 4454444 45799988420 1
Q ss_pred eE-EEEEeccCC---------CCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 261 ER-SSFDINEQI---------DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 261 ~~-~~f~l~~~~---------~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.| ..|..+... -.+|.++.||++|+++.+-..- +|+|||.+
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl----tvk~wD~n 301 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL----TVKLWDLN 301 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc----eeEEEecc
Confidence 12 223333111 1358899999999999987655 69999984
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=4.7e-05 Score=88.72 Aligned_cols=267 Identities=15% Similarity=0.163 Sum_probs=156.0
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE---------
Q 000992 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT--------- 94 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as--------- 94 (1196)
+.+-|.|-|--|.+.-.-+ |..|--. .-. ++. -+ +...|.-+.|||.-++|++=+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~--~f~---r~~-------RF---~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~ 277 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGE--SFD---RIQ-------RF---YHPGVQFIDFSPNEKYLVTYSPEPIIVEED 277 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCc--cHH---HHH-------hc---cCCCceeeecCCccceEEEecCCccccCcc
Confidence 4456667666666555554 6667541 111 011 11 134789999999999999754
Q ss_pred --CCCcEEEEECCCCeEE-Eeeeec--CcEE-EEEECCCCCEEEEEeCCceEEEE-eccCceeeeeecccccCccccccC
Q 000992 95 --SSGLLLLHSVDGNATE-VVGRVE--GGVR-FISPSPDGDLLGVTTGFGQILVM-THDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 95 --~dG~I~lw~~~~~~~e-~vg~~~--~~I~-~~awSPDg~~LA~~s~d~tV~l~-~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
+...++|||..||.+. ....+. -.++ -..||.|++++|-.++++ |.+. +..+.++-...+..
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~lld~Kslki---------- 346 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLLDKKSLKI---------- 346 (698)
T ss_pred cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecCceeeecccccCC----------
Confidence 2356899999998653 222111 2233 479999999999999974 5443 33344433333222
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccc-cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNS-SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~-~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
++|...+|||-++.||. = -++ ......+-+-..-+++.+.+-.-+.=.-..+-|..+|.+|+.--+..+.
T Consensus 347 ------~gIr~FswsP~~~llAY-w--tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK 417 (698)
T KOG2314|consen 347 ------SGIRDFSWSPTSNLLAY-W--TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTK 417 (698)
T ss_pred ------ccccCcccCCCcceEEE-E--cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecc
Confidence 46788999999999883 2 222 0112344444444444444322222122568899999999876543220
Q ss_pred CC----CCeEEEEeCCCeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CC-EEEEEEEEEE
Q 000992 247 NK----CPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NN-HWYLKYEIRY 317 (1196)
Q Consensus 247 ~~----~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~-~wylkq~l~~ 317 (1196)
.. -..+-+|... +-.++ .+....|...+|-|.|...|+-+......+|+++... |. .|-|..++
T Consensus 418 ~~~~g~f~n~eIfrir-----eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-- 490 (698)
T KOG2314|consen 418 SKVKGQFSNLEIFRIR-----EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-- 490 (698)
T ss_pred ccccceEeeEEEEEee-----ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--
Confidence 00 0112222210 00111 1123468999999999999998877666689999887 43 34333333
Q ss_pred ecCCcEEEEEccCCCc
Q 000992 318 LRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 318 ~~~~~~~v~Wsp~~~~ 333 (1196)
.......+.|+|.|..
T Consensus 491 dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 491 DKKFANTVFWSPKGRF 506 (698)
T ss_pred cccccceEEEcCCCcE
Confidence 2222377999999986
No 270
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=0.0001 Score=83.01 Aligned_cols=213 Identities=17% Similarity=0.132 Sum_probs=137.5
Q ss_pred CEEEEEEcc-CCCEEEEEECCCcEEE-EECCCCeEE-EeeeecCcEE--EEEECCCCCEEEEE-----eCCceEEEEecc
Q 000992 77 SITAFDYLM-EKEALIVGTSSGLLLL-HSVDGNATE-VVGRVEGGVR--FISPSPDGDLLGVT-----TGFGQILVMTHD 146 (1196)
Q Consensus 77 ~v~~v~~sp-d~~~La~as~dG~I~l-w~~~~~~~e-~vg~~~~~I~--~~awSPDg~~LA~~-----s~d~tV~l~~~~ 146 (1196)
+.-+++.+| +...+++|-.-|+..+ ||..+++.. .+..-++.-. -..|||||++|-+. ++.|.|-+|+..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 455678899 6788889999998655 899887543 2221111111 36799999999876 456788888743
Q ss_pred --CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeec--ccccc----------CCCCEEEEEECCCC
Q 000992 147 --WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSE--FCNSS----------KLHKRLKVWERDSG 212 (1196)
Q Consensus 147 --~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss--~d~~~----------~~d~~irVWd~~~G 212 (1196)
+..+.|...+... =-.+.|.|||+.|+ |+- +...+ +-+-.+-.-|..+|
T Consensus 86 ~~~~ri~E~~s~GIG----------------PHel~l~pDG~tLv-VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIG----------------PHELLLMPDGETLV-VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred CCcEEEeEecCCCcC----------------hhhEEEcCCCCEEE-EEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 4445454433221 13588999998887 652 21110 11123445677799
Q ss_pred cEEEEec----cCCCceeEEEEcCCCCeEEEEecCCC-CCCCCeEEEEeCCCeeEEEEEecc----CCCCcEEEEEEccC
Q 000992 213 TLQASSE----LKAFMGAVLEWMPSGANIAAVYDRKS-ENKCPSIVFYERNGLERSSFDINE----QIDSTVELLKWNCM 283 (1196)
Q Consensus 213 ~l~~~~e----~~~~~v~slawsPdG~~IAs~s~d~~-~~~~~~V~~~e~nGl~~~~f~l~~----~~~~~V~~laWSpD 283 (1196)
+++...+ -+.-.+..++|.++|..+...+.... .+...-|.++.+.+.. ..+..+. ...+.|-+|++++|
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccCChHHHHhhCCceEEEEEeCC
Confidence 9887633 24556899999999998877776543 2223456667765532 2222221 11356999999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|..+|+.+-.+ +.+.+|+..+..|
T Consensus 228 g~~ia~tsPrG--g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 228 GRLIAVTSPRG--GRVAVWDAATGRL 251 (305)
T ss_pred CCEEEEECCCC--CEEEEEECCCCCE
Confidence 99998877544 5899999988765
No 271
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=6.6e-06 Score=101.55 Aligned_cols=244 Identities=14% Similarity=0.020 Sum_probs=157.3
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-
Q 000992 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE- 110 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e- 110 (1196)
...+.++|+|+.|..|+-- ..+....++.|--.+|.+.-.-+.+.=.-+.|-.....|.++++-..|+|||....++.
T Consensus 1123 ~aLlLtas~dGvIRIwk~y-~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDY-ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hhheeeeccCceEEEeccc-ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 3456778899999999872 33212233322222222211111112256789988888888888889999999874432
Q ss_pred -E-eeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCC--eEEEEEccCC
Q 000992 111 -V-VGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF--KSPISWRGDG 185 (1196)
Q Consensus 111 -~-vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~--v~~isWspDG 185 (1196)
+ .| -+..|++++=+-+ |..+|.|-.||.|+++++--.+.. ..| ..++.|.+. |..+++.+.|
T Consensus 1202 diP~~-s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------s~v--~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1202 DIPYG-SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------SLV--CVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred ecccC-CCccceeecccccCCceEEEeecCCceEEeecccCCcc----------ccc--eeecccCCcccceeEEeecCC
Confidence 2 23 2556777655433 699999999999998774322111 001 012234444 8889987655
Q ss_pred ce-EEEeeccccccCCCCEEEEEECCCCcEEEEeccCC----C-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 186 KY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA----F-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 186 ~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~----~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
-- |+ +++ .++.|++||.........+.-.. | ..+++.-+++-..||+|+. ..|++|+..|
T Consensus 1269 ~~elv-Sgs------~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1269 LGELV-SGS------QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------QLIKIYSLSG 1334 (1387)
T ss_pred Cccee-eec------cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-------ceEEEEecCh
Confidence 43 55 354 36899999983322222222111 3 3688999999999999986 3599999988
Q ss_pred eeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 260 LERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 260 l~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
...+.+... ++.-+.+.+|+|.|---+||+|+.|. +|-||...+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds---~V~iYs~~k 1382 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS---TVSIYSCEK 1382 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc---eEEEeecCC
Confidence 776654322 22235689999999999999999998 999998765
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.45 E-value=1e-05 Score=89.40 Aligned_cols=268 Identities=12% Similarity=0.101 Sum_probs=151.2
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCce------eeeeeccccc-C-ccccccCccccCCCCeEEEEEccCCc-
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL------LYENPLEELA-E-GFDVHEPELSSSFSFKSPISWRGDGK- 186 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~------~~~~~l~~~~-~-~~~Vs~tqf~~~~~~v~~isWspDG~- 186 (1196)
.+-|.++.|..+|++||+|..+|.|.++.++-.- .++.+.|..+ + -+.+ .-...+..|.|-++|.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSl------eieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSL------EIEEKINKIRWLDDGNL 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhh------hhhhhhhhceecCCCCc
Confidence 3568999999999999999999999998654211 1222221111 0 0000 1224678999999887
Q ss_pred -eEEEeeccccccCCCCEEEEEECCCCcEEE--E-e--ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 187 -YFATLSEFCNSSKLHKRLKVWERDSGTLQA--S-S--ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 187 -~lAsvss~d~~~~~d~~irVWd~~~G~l~~--~-~--e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
.|. +++ .|++|++|-..+-.... . + +...+.+.++ ++...+..+ ..| +..
T Consensus 99 a~FL-lst------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l------r~p~~~~~~------~~v---ea~-- 154 (433)
T KOG1354|consen 99 AEFL-LST------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL------RLPVEGRHD------LEV---EAS-- 154 (433)
T ss_pred cEEE-Eec------CCcceeeeeeeccccccccccccccCCCCcccee------eceeecccc------cee---eee--
Confidence 333 343 68999999873221111 0 0 0000111111 111111110 000 000
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC-EEEEEEEEEEec----CCc-EEEEEccCCCce
Q 000992 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLR----RDG-IRFMWHPTKPLQ 334 (1196)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l~~~~----~~~-~~v~Wsp~~~~~ 334 (1196)
-++.| ...|+..|++|+.|.|++.+.++..-+ |-||+..-- +-+-.-.+.-.. ..+ ++..|||.....
T Consensus 155 prRv~--aNaHtyhiNSIS~NsD~Et~lSADdLR----INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~ 228 (433)
T KOG1354|consen 155 PRRVY--ANAHTYHINSISVNSDKETFLSADDLR----INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV 228 (433)
T ss_pred eeeec--cccceeEeeeeeecCccceEeecccee----eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE
Confidence 00111 122456799999999999999987665 999997621 111111111100 123 677899999888
Q ss_pred EEEEecCCcEEEEEEEEe-------------------------------eecCCC-eeEEEEcCCEEEEeeccccCCCCC
Q 000992 335 LICWTLDGQITTYNFIWT-------------------------------TAVMEN-STALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 335 L~~~~~~g~~~~~~~~~~-------------------------------~~~~d~-~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
++..+..|++...+..-+ +.+++. .....-|--+|++|++....- |
T Consensus 229 f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~--p 306 (433)
T KOG1354|consen 229 FVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK--P 306 (433)
T ss_pred EEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC--c
Confidence 888888899887665411 002222 344555667899998854332 2
Q ss_pred ceeeeec-----------CCCCE---EEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 383 MYLFSLK-----------FPTAV---TEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 383 m~~~~l~-----------~~~~V---~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
...+++- -.+.| ..++||-++ ..+++|+.++.+++++.+
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~--~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND--SYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc--ceEecccccceEEEecCC
Confidence 2222220 12334 358899888 899999999999999954
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.44 E-value=0.00039 Score=80.84 Aligned_cols=271 Identities=11% Similarity=0.066 Sum_probs=146.5
Q ss_pred CcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeC----------CceEEEEe-ccCceeeeeecccccCcc
Q 000992 97 GLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTG----------FGQILVMT-HDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 97 G~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~----------d~tV~l~~-~~~d~~~~~~l~~~~~~~ 162 (1196)
|+|.+.|.+++++. -+|.... .+ .||||+.|.++.. ++.|.+|+ ....++.++.+...++.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~---~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN---PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc---ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 78999999886542 2332122 23 9999999998866 67888886 567777777765442100
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE--------cCCC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW--------MPSG 234 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw--------sPdG 234 (1196)
. -.....++.||||+++. ++..+ .+..|-|.|..+++.+....- .+-..-..+ ++||
T Consensus 103 ~---------~~~~~~~~ls~dgk~l~-V~n~~----p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg 167 (352)
T TIGR02658 103 V---------GTYPWMTSLTPDNKTLL-FYQFS----PSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDG 167 (352)
T ss_pred c---------cCccceEEECCCCCEEE-EecCC----CCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecC
Confidence 0 01235789999999988 66543 358999999989988876552 222222333 4444
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
.++-....+.+......+.+|+.+- .+. .... .+++ ||+.+-+... + +|.+-|..+..--...
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~-------~~v-~~rP----~~~~~dg~~~~vs~e-G---~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPED-------EYL-INHP----AYSNKSGRLVWPTYT-G---KIFQIDLSSGDAKFLP 231 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCc-------ccc-ccCC----ceEcCCCcEEEEecC-C---eEEEEecCCCcceecc
Confidence 4433332221100000011111000 000 0011 3455 8888877777 5 7888885432110011
Q ss_pred EE---EEec-------CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc
Q 000992 314 EI---RYLR-------RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1196)
Q Consensus 314 ~l---~~~~-------~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm 383 (1196)
.+ .+.. ....-+++||++.. +.++...+. .|+. ..+...++++|-.+-++
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~-lyV~~~~~~------~~th-k~~~~~V~ViD~~t~kv------------ 291 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDR-IYLLADQRA------KWTH-KTASRFLFVVDAKTGKR------------ 291 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCE-EEEEecCCc------cccc-cCCCCEEEEEECCCCeE------------
Confidence 11 1110 00012445554443 333221110 0111 12234677777655332
Q ss_pred eeeeecCCCCEEEEEEecCCCCC-EEEEEE-CCCcEEEEeCCCC
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKN-CLAAIL-SDGCLCVVDLPAP 425 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~-~lAs~~-~dg~v~lw~~~~~ 425 (1196)
...+.....++.|+||||+ + .|.+.. .+++|.+.|..+.
T Consensus 292 -i~~i~vG~~~~~iavS~Dg--kp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 292 -LRKIELGHEIDSINVSQDA--KPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred -EEEEeCCCceeeEEECCCC--CeEEEEeCCCCCcEEEEECcCC
Confidence 1334456678999999999 7 766665 5789999998764
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=0.00013 Score=80.01 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=80.4
Q ss_pred EEECCCCCEEEEEeCCceEEEEe--ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccC
Q 000992 122 ISPSPDGDLLGVTTGFGQILVMT--HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1196)
Q Consensus 122 ~awSPDg~~LA~~s~d~tV~l~~--~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~ 199 (1196)
++-++||++||+... ..|.+=+ .+|..+.+.+--+.+ . ..| =..++|||||.+|| .+.
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD-~----~PQ-------WRkl~WSpD~tlLa-~a~------ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKD-P----NPQ-------WRKLAWSPDCTLLA-YAE------ 62 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCC-C----Cch-------heEEEECCCCcEEE-EEc------
Confidence 567899999998764 4555532 234444333322222 0 112 26899999999999 664
Q ss_pred CCCEEEEEECCCCcEEEEeccCC-------CceeEEEEcCCC-------CeEEEEecCCCCCCCCeEEEEe------CCC
Q 000992 200 LHKRLKVWERDSGTLQASSELKA-------FMGAVLEWMPSG-------ANIAAVYDRKSENKCPSIVFYE------RNG 259 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~e~~~-------~~v~slawsPdG-------~~IAs~s~d~~~~~~~~V~~~e------~nG 259 (1196)
..++|+|+|. .|..+.+..+.. ..+..+.|-+-- .+|+..-+ ..++=|- .+.
T Consensus 63 S~G~i~vfdl-~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-------G~L~Sy~vs~gt~q~y 134 (282)
T PF15492_consen 63 STGTIRVFDL-MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-------GQLRSYLVSVGTNQGY 134 (282)
T ss_pred CCCeEEEEec-ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc-------ceeeeEEEEcccCCcc
Confidence 3589999999 777666654422 112333333221 12221110 0111110 111
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.....|.+..+....|.++.|.|..++|.+++...
T Consensus 135 ~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 135 QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 11223444333345799999999999999887655
No 275
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=5e-06 Score=96.24 Aligned_cols=218 Identities=13% Similarity=0.109 Sum_probs=137.2
Q ss_pred cccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE--EeeeecCcEEEEEECCC--CCEEEEEeCCceE
Q 000992 65 AEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE--VVGRVEGGVRFISPSPD--GDLLGVTTGFGQI 140 (1196)
Q Consensus 65 ~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e--~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV 140 (1196)
.+|.+| .+.|++++|..||..|++||.|-.+++||+-..+.. +-.+|...|.++.|=|- .+++++|.+|..|
T Consensus 44 ~eL~GH----~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 44 AELTGH----TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhccc----cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 346666 589999999999999999999999999999865442 44457889999999874 5789999999999
Q ss_pred EEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
++.+.+ -..+-. .+++-..+.--|.-|.+.|-.|+=-|+| ..|- +++ +|++||-+|..+-....-.+
T Consensus 120 ~lfdl~--~~~~~~---~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw-sas------EDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 120 KLFDLD--SSKEGG---MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW-SAS------EDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEecc--cccccc---cccCccchhhhhhhhhhhhhheecCCCCCceEE-Eec------CCcceeeecccCCccCCccc
Confidence 886432 111110 0011111111244577888899999999 5666 454 57999999975421111011
Q ss_pred --------cCCCc--eeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC---------CCeeE----------EEEE---
Q 000992 220 --------LKAFM--GAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER---------NGLER----------SSFD--- 266 (1196)
Q Consensus 220 --------~~~~~--v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~---------nGl~~----------~~f~--- 266 (1196)
-+..+ ..++..||... ++|.|+.++ -.++|++ +|.+. .-|.
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdp------farLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h 261 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDP------FARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH 261 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCc------hhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence 01111 26889999764 788887653 2444441 12110 0000
Q ss_pred eccC-C--C---CcEEEEEEccCCCe-eEEEEccCCcceEEEEEecCCE
Q 000992 267 INEQ-I--D---STVELLKWNCMSDL-LAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 267 l~~~-~--~---~~V~~laWSpDg~~-LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+... . . -.+.-+.|||+|+- |++.+.+ .|.|+++++.+
T Consensus 262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE----hVYlfdvn~~~ 306 (758)
T KOG1310|consen 262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE----HVYLFDVNEDK 306 (758)
T ss_pred ccCcccccccceeeeEEEEECCCCcEEEEeeCCe----EEEEEeecCCC
Confidence 0000 0 0 12567899999975 5555544 59999998754
No 276
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.36 E-value=5.7e-06 Score=102.67 Aligned_cols=191 Identities=13% Similarity=0.039 Sum_probs=133.6
Q ss_pred cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-
Q 000992 30 IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA- 108 (1196)
Q Consensus 30 ~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~- 108 (1196)
-+.-.++.++.++.+..|+.+ ....-.++ ..+ ...+-....-+.++++.-++++|+.-|.|++|.+....
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~--~~~~~~~i---~~~----er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSK--NSSVLSKI---QSD----ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred hhcceEEEEEcCceEEEEecc--cCceehhc---CCC----ceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 445566666666667777762 21111111 100 00001234556778888999999999999999986432
Q ss_pred -EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 109 -TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 109 -~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
..+.| |++.|.++.||-||.++|++|.|.++++|..+ +...+.. .--+|..+++.+.+.|. +
T Consensus 168 p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~----s~~~~~~----------~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 168 PIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPID----SREVLGC----------TGFGHSARVWACCFLPN--R 230 (967)
T ss_pred cceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecc----cccccCc----------ccccccceeEEEEeccc--e
Confidence 33666 59999999999999999999999999988532 1111110 01167889999999999 7
Q ss_pred EEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
++ +.+ .|.+.|+|+. +|..+.+.+.|. ..++.++..++--.+.+++.|. .+++|+.+|.
T Consensus 231 i~-t~g------edctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds------~lk~~~l~~r 290 (967)
T KOG0974|consen 231 II-TVG------EDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS------TLKLWDLNGR 290 (967)
T ss_pred eE-Eec------cceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCc------chhhhhhhcc
Confidence 77 454 5799999988 887777766554 4689999988887777877764 6999998764
No 277
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=8.9e-06 Score=94.24 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=111.7
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE-EEEeccCCCceeEEEEcCC--CCeEEEEecCC
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPS--GANIAAVYDRK 244 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~e~~~~~v~slawsPd--G~~IAs~s~d~ 244 (1196)
...||.+-|.++.|+.||.+|| +|| .|-.+-|||.-.-++ +++..+|.+-|.++.|=|- .++|+||..|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~-SGS------DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLA-SGS------DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhccccceecceeecCCCCEEe-ecC------CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 3458999999999999999999 676 357888999865544 4566889999999999994 45778887764
Q ss_pred CCCCCCeEEEEeCCCee-----EEEE-Eec--cCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEE
Q 000992 245 SENKCPSIVFYERNGLE-----RSSF-DIN--EQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~-----~~~f-~l~--~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l 315 (1196)
.|++|+.+... |+-- +++ .-+..+|..|+=-|+| ...-++++|+ +|+-+|+...|- .++..
T Consensus 118 ------~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG---tirQyDiREph~-c~p~~ 187 (758)
T KOG1310|consen 118 ------LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG---TIRQYDIREPHV-CNPDE 187 (758)
T ss_pred ------eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc---ceeeecccCCcc-CCccc
Confidence 69999976332 2210 111 1234678899999999 7888999999 999999876442 12222
Q ss_pred EEec-------C--CcEEEEEccCCCceEEEEecC
Q 000992 316 RYLR-------R--DGIRFMWHPTKPLQLICWTLD 341 (1196)
Q Consensus 316 ~~~~-------~--~~~~v~Wsp~~~~~L~~~~~~ 341 (1196)
..+. . +-.++.-+|..+..|+++..+
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd 222 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD 222 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCC
Confidence 1111 1 115677889999888887643
No 278
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=4.2e-05 Score=86.18 Aligned_cols=201 Identities=12% Similarity=0.077 Sum_probs=132.2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC-----CeEEEeeeecCcEEEEEECCCCCEEEE-EeCC--ceEEEEeccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG-----NATEVVGRVEGGVRFISPSPDGDLLGV-TTGF--GQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~-----~~~e~vg~~~~~I~~~awSPDg~~LA~-~s~d--~tV~l~~~~~ 147 (1196)
..|.+++..- ..|.++-.+|++.+|+... .++.... ...++..+.=+|.-..++. |+.. +.+.+|+..-
T Consensus 106 ~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhcC--CEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 4566666553 3566678899999999873 2222222 2367888888887665554 6666 5677775321
Q ss_pred c-ee-eeeeccccc--CccccccCccccCCCCeEEEEEccC--CceEEEeeccccccCCCCEEEEEECCCCc-EEEEecc
Q 000992 148 D-LL-YENPLEELA--EGFDVHEPELSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSEL 220 (1196)
Q Consensus 148 d-~~-~~~~l~~~~--~~~~Vs~tqf~~~~~~v~~isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~ 220 (1196)
. .+ .......+. -.-+ -.+..|.|-++ .+.||+ .+ .-+.+|+||...|. ....+.-
T Consensus 183 ~~qiw~aKNvpnD~L~LrVP----------vW~tdi~Fl~g~~~~~fat-~T------~~hqvR~YDt~~qRRPV~~fd~ 245 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVP----------VWITDIRFLEGSPNYKFAT-IT------RYHQVRLYDTRHQRRPVAQFDF 245 (412)
T ss_pred ceeeeeccCCCCccccceee----------eeeccceecCCCCCceEEE-Ee------cceeEEEecCcccCcceeEecc
Confidence 1 00 001111111 0011 13467788777 778885 43 34789999986553 4555555
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
....+.+++--|+|++|.++... ..+..||.++..+....+. .-.++|.+|.-.|.+++||+++-|+ .|+
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~------g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDR---yvR 315 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTK------GQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDR---YVR 315 (412)
T ss_pred ccCcceeeeecCCCcEEEEeccc------chhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccce---eEE
Confidence 56678999999999999988653 4688899665444322222 2357899999999999999999999 999
Q ss_pred EEEecC
Q 000992 301 ICFFSN 306 (1196)
Q Consensus 301 lW~~~n 306 (1196)
|+|+++
T Consensus 316 IhD~kt 321 (412)
T KOG3881|consen 316 IHDIKT 321 (412)
T ss_pred Eeeccc
Confidence 999987
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.29 E-value=9.6e-05 Score=98.08 Aligned_cols=214 Identities=14% Similarity=0.022 Sum_probs=126.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeecccc-ccccccC--------CCCCCEEEEEEccC-CCEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISA-EIEHIDL--------EPGDSITAFDYLME-KEAL 90 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~~~--------~~~~~v~~v~~spd-~~~L 90 (1196)
.+.++++|++++.||++.. .+.|..+|. .++.. .++.. +..+..+ .....+.+|+++|+ +...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~--~~~~V----~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~Ly 698 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDF--VNETV----RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY 698 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEec--CCCEE----EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEE
Confidence 4688999999999999855 556778887 33332 22110 0000000 00135678999995 5555
Q ss_pred EEEECCCcEEEEECCCCeEEEeeee---------------cCcEEEEEECCCCCEEEEE-eCCceEEEEecc-Cceeeee
Q 000992 91 IVGTSSGLLLLHSVDGNATEVVGRV---------------EGGVRFISPSPDGDLLGVT-TGFGQILVMTHD-WDLLYEN 153 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~~~~e~vg~~---------------~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~-~d~~~~~ 153 (1196)
++.+.++.|.+||..++.+..++.. -..-..++|||||+.|.++ +++++|.+|+.. +.. . .
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~-~ 776 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-R-L 776 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-E-E
Confidence 6667788999999988766533210 0124569999999955544 567899888632 211 0 0
Q ss_pred eccccc-----------CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cC
Q 000992 154 PLEELA-----------EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LK 221 (1196)
Q Consensus 154 ~l~~~~-----------~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~ 221 (1196)
...... ....-+..+| ..-..++|++||..++ +.+ .+++|++||..+|.+..... +.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l----~~P~Gvavd~dG~LYV-ADs------~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLL----QHPLGVLCAKDGQIYV-ADS------YNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhc----cCCceeeEeCCCcEEE-EEC------CCCEEEEEECCCCeEEEEeccCC
Confidence 000000 0000000011 1125789999999777 343 46899999996665543221 11
Q ss_pred ------------CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 222 ------------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 222 ------------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
-.....|+++|+|+++++-+. .+.|++|+.+..
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~ 890 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKG 890 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCC
Confidence 013478999999997766544 368999997653
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.27 E-value=0.00056 Score=79.52 Aligned_cols=247 Identities=7% Similarity=-0.013 Sum_probs=136.7
Q ss_pred CEEEEEeCC-----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC----------CC
Q 000992 33 NRLFFASSA-----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----------SG 97 (1196)
Q Consensus 33 ~~l~~~s~~-----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~----------dG 97 (1196)
..+|+.... +.|+.+|. .+.+. +.+++.+ .....+ .||||+.|.++.. ++
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~--~~~~v---~g~i~~G---------~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDG--EAGRV---LGMTDGG---------FLPNPV-VASDGSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred CEEEEECCcccccCceEEEEEC--CCCEE---EEEEEcc---------CCCcee-ECCCCCEEEEEeccccccccCCCCC
Confidence 445555332 56777777 44333 2333333 233344 8999999988866 77
Q ss_pred cEEEEECCCCeEE--E-eee-----ecCcEEEEEECCCCCEEEEEeC--CceEEEEe-ccCceeeeeeccccc------C
Q 000992 98 LLLLHSVDGNATE--V-VGR-----VEGGVRFISPSPDGDLLGVTTG--FGQILVMT-HDWDLLYENPLEELA------E 160 (1196)
Q Consensus 98 ~I~lw~~~~~~~e--~-vg~-----~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~-~~~d~~~~~~l~~~~------~ 160 (1196)
.|.+||..+.+.. + +|. .-..-..+++||||++|.+... ++.|.+.+ ...+.+.++...... +
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 8999999986542 1 111 0112347899999999998763 56777765 345556655442211 0
Q ss_pred ccc---c--------c----------cCc-cccCCCCeE-EEE-EccCCceEEEeeccccccCCCCEEEEEEC-----CC
Q 000992 161 GFD---V--------H----------EPE-LSSSFSFKS-PIS-WRGDGKYFATLSEFCNSSKLHKRLKVWER-----DS 211 (1196)
Q Consensus 161 ~~~---V--------s----------~tq-f~~~~~~v~-~is-WspDG~~lAsvss~d~~~~~d~~irVWd~-----~~ 211 (1196)
..+ + + ... |++.++.+. .-. +.+||+++- ++. .++|.+-|. ..
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~-vs~-------eG~V~~id~~~~~~~~ 229 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW-PTY-------TGKIFQIDLSSGDAKF 229 (352)
T ss_pred CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE-Eec-------CCeEEEEecCCCccee
Confidence 000 0 0 000 111111100 002 333887765 554 278888884 12
Q ss_pred CcEEEEec---c----CCCceeEEEEcCCCCeEEEEecCC----CCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEE
Q 000992 212 GTLQASSE---L----KAFMGAVLEWMPSGANIAAVYDRK----SENKCPSIVFYERN-GLERSSFDINEQIDSTVELLK 279 (1196)
Q Consensus 212 G~l~~~~e---~----~~~~v~slawsPdG~~IAs~s~d~----~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~la 279 (1196)
.+...+.. . ..+....++++|+|+.+-.....+ +......|.++|.. +.+... ++. ...++.|+
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~--i~v--G~~~~~ia 305 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK--IEL--GHEIDSIN 305 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE--EeC--CCceeeEE
Confidence 22222211 1 122234599999999877643211 11224578888853 333332 221 24689999
Q ss_pred EccCCC-eeEEEEccCCcceEEEEEecCCE
Q 000992 280 WNCMSD-LLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 280 WSpDg~-~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+||||+ .|.+..... +.|.+.|..+.+
T Consensus 306 vS~Dgkp~lyvtn~~s--~~VsViD~~t~k 333 (352)
T TIGR02658 306 VSQDAKPLLYALSTGD--KTLYIFDAETGK 333 (352)
T ss_pred ECCCCCeEEEEeCCCC--CcEEEEECcCCe
Confidence 999999 776665322 269999988764
No 281
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.25 E-value=0.0001 Score=92.89 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=107.1
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEeccCceeee-eecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~~d~~~~-~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
|++.|..+-.+-.|...|..++-|++. .++++||.||+|++|+.. +...+ .... ++..+..-.+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~-k~~~~~~s~r--------S~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR-KLEGEGGSAR--------SELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeeh-hhhcCcceee--------eeEEEeccCCceEEE
Confidence 777776665444566667777666655 999999999999999621 11111 0000 011111223567888
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCC--CcEEEEec------cCCC-ceeEEEEcC-CCC-eEEEEecCCCCCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQASSE------LKAF-MGAVLEWMP-SGA-NIAAVYDRKSENK 248 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~--G~l~~~~e------~~~~-~v~slawsP-dG~-~IAs~s~d~~~~~ 248 (1196)
..-+.|.+|| +|+ .||.|++...+- ++...... ..+| .+..-++.- ++. .++.+...
T Consensus 1105 t~~~~~~~~A-v~t------~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~----- 1172 (1431)
T KOG1240|consen 1105 TMCGNGDQFA-VST------KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL----- 1172 (1431)
T ss_pred EeccCCCeEE-EEc------CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEec-----
Confidence 8889999999 886 478898887632 22111110 0122 223333322 233 44444442
Q ss_pred CCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 249 CPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 249 ~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..|+.|+.- .+|.-+.+. .+..+.|.+++-+|-+..|++|...| .+-+||+.
T Consensus 1173 -~~iv~~D~r-~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G---~l~lWDLR 1225 (1431)
T KOG1240|consen 1173 -SRIVSWDTR-MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG---QLVLWDLR 1225 (1431)
T ss_pred -cceEEecch-hhhhHHhhhcCccccceeEEEecCCceEEEEecCCc---eEEEEEee
Confidence 357788742 222222333 12246799999999999999999999 89999986
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.21 E-value=7.7e-05 Score=85.46 Aligned_cols=148 Identities=16% Similarity=0.235 Sum_probs=104.0
Q ss_pred CCEEEEEEccCCCEEEEEECCC-cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSG-LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG-~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
+.|.-..+.-|++.+++|..|| .+-++|.+|++.+....--+.|.++.-||||+.++.+.... .+|..+-+.-+-..
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~--el~vididngnv~~ 437 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF--ELWVIDIDNGNVRL 437 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce--EEEEEEecCCCeeE
Confidence 4678888888999999999999 68889999998774433347799999999999998876554 44543222111111
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
+.. ...+-+..+.|+|++++|| -+..++ --.+.|+++|..+|+......+. +.-.+-||-|||
T Consensus 438 idk-------------S~~~lItdf~~~~nsr~iA-YafP~g--y~tq~Iklydm~~~Kiy~vTT~t-a~DfsPaFD~d~ 500 (668)
T COG4946 438 IDK-------------SEYGLITDFDWHPNSRWIA-YAFPEG--YYTQSIKLYDMDGGKIYDVTTPT-AYDFSPAFDPDG 500 (668)
T ss_pred ecc-------------cccceeEEEEEcCCceeEE-EecCcc--eeeeeEEEEecCCCeEEEecCCc-ccccCcccCCCC
Confidence 111 1235679999999999999 565321 13467999999666766554432 233678999999
Q ss_pred CeEEEEec
Q 000992 235 ANIAAVYD 242 (1196)
Q Consensus 235 ~~IAs~s~ 242 (1196)
+++---+.
T Consensus 501 ryLYfLs~ 508 (668)
T COG4946 501 RYLYFLSA 508 (668)
T ss_pred cEEEEEec
Confidence 98876654
No 283
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=4.6e-05 Score=89.20 Aligned_cols=194 Identities=10% Similarity=0.066 Sum_probs=124.7
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccc
Q 000992 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 80 ~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
+|.|+.-..=|.++++..+|.-.|++.|..- -...-.++|+++..+|-..+||.||.+|.|-.|+ +-........
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD----pR~ksrv~~l 213 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD----PRDKSRVGTL 213 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec----chhhhhheee
Confidence 3444333344555566777888888876542 2222247899999999999999999999998875 2221111111
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCC--CC
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPS--GA 235 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPd--G~ 235 (1196)
+....|+...+......|++|+|+.||-.+| ||+ ..+.+-|||..+.+.+..-. +..-.+..+.|.+. ++
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~a-VGt------s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVA-VGT------STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEE-eec------cCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 1011122111112223579999999999999 886 45899999986655544332 23345789999887 45
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.++|. | +..+++|+++.-.. +..-. .+..++.+++=|++-++.++..+.
T Consensus 287 ~v~S~--D-----k~~~kiWd~~~Gk~--~asiE-pt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 287 KVVSM--D-----KRILKIWDECTGKP--MASIE-PTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred eEEec--c-----hHHhhhcccccCCc--eeecc-ccCCcCceeeecCCceEEEecCCC
Confidence 56665 3 35799999762211 11112 234599999999999999988776
No 284
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=4.6e-05 Score=91.18 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=104.7
Q ss_pred CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC--c--eEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 97 GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF--G--QILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d--~--tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
+++.+-|.++.....+..-...+..-+|||||+.++..+-. + .+.+++..... .+.. + .|.+
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-~~~i---------~---~~~g- 238 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-RPVI---------L---NFNG- 238 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-ccee---------e---ccCC-
Confidence 34444454433333444334568889999999999988421 1 24443321110 0000 0 1111
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.-...+|||||+++|. +... .+...|.+.|...++ ...+....+.-..-+|+|||+.|+.+++..+ ...|
T Consensus 239 --~~~~P~fspDG~~l~f-~~~r---dg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I 308 (425)
T COG0823 239 --NNGAPAFSPDGSKLAF-SSSR---DGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGG---RPQI 308 (425)
T ss_pred --ccCCccCCCCCCEEEE-EECC---CCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCC---Ccce
Confidence 2246789999999994 4422 245668888884444 3334444555568899999999999987654 5678
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000992 253 VFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1196)
-..+.+|......+..... .. .-.|||||+.||..+..
T Consensus 309 ~~~~~~g~~~~riT~~~~~--~~-~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 309 YLYDLEGSQVTRLTFSGGG--NS-NPVWSPDGDKIVFESSS 346 (425)
T ss_pred EEECCCCCceeEeeccCCC--Cc-CccCCCCCCEEEEEecc
Confidence 7888888665444433221 12 67899999999998865
No 285
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00019 Score=84.97 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=129.0
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEE--Eee--eecCcEEEEEE--------------------CCCCCEEEEEeCCceE
Q 000992 85 MEKEALIVGTSSGLLLLHSVDGNATE--VVG--RVEGGVRFISP--------------------SPDGDLLGVTTGFGQI 140 (1196)
Q Consensus 85 pd~~~La~as~dG~I~lw~~~~~~~e--~vg--~~~~~I~~~aw--------------------SPDg~~LA~~s~d~tV 140 (1196)
|-+.++|..+.||-+++|+...+++. ... +..+.-.+..| |-|-..||.|+..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44678899999999999999776542 111 12233344444 3455567888888888
Q ss_pred EEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL 220 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~ 220 (1196)
.+.+-....++-. +.++ .|++.|..+.|+.+-..|=| ++ +|..+..|+..+++.......
T Consensus 83 ~~ys~~~g~it~~-~st~------------~h~~~v~~~~~~~~~~ciyS-~~------ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 83 LLYSVAGGEITAK-LSTD------------KHYGNVNEILDAQRLGCIYS-VG------ADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred EEEEecCCeEEEE-EecC------------CCCCcceeeecccccCceEe-cC------CceeEEEEecccceeeeeecc
Confidence 7765322222111 1111 57889999999999888883 43 478999999989999998888
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccC-----CC-eeEEEEccC
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM-----SD-LLAAVVRFE 294 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD-----g~-~LAs~~~d~ 294 (1196)
....+.++..+|||..++++++ .|++|+.+....-+ +++ +|.+.|..++|--+ |+ +|++...++
T Consensus 143 ~~~~~~sl~is~D~~~l~~as~--------~ik~~~~~~kevv~-~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTASR--------QIKVLDIETKEVVI-TFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred CCCccceEEEcCCCCEEEeccc--------eEEEEEccCceEEE-Eec-CCCcceEEEEEEEeccccccceeeecccccc
Confidence 8888999999999999999987 59999976432211 222 34568999999877 44 344444444
Q ss_pred CcceEEEEEecC
Q 000992 295 EYDSVKICFFSN 306 (1196)
Q Consensus 295 ~~~~V~lW~~~n 306 (1196)
.+-+|-+.+
T Consensus 213 ---~i~~w~v~~ 221 (541)
T KOG4547|consen 213 ---GITVWVVEK 221 (541)
T ss_pred ---ceeEEEEEc
Confidence 466666554
No 286
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.08 E-value=8.2e-05 Score=88.54 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=69.0
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~ 146 (1196)
+..+|+ ...|++.+++|+.+.|++|..||.|++||...+...... ..--...++|.|||..+++++.-|.+.+|+..
T Consensus 253 vtsipL--~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 253 VTSIPL--PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEEec--CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 344444 468999999999999999999999999999876554332 24457889999999999999999999999877
Q ss_pred Cceeeeeec
Q 000992 147 WDLLYENPL 155 (1196)
Q Consensus 147 ~d~~~~~~l 155 (1196)
-.++.-.-+
T Consensus 330 Lspi~~qLl 338 (545)
T PF11768_consen 330 LSPIKMQLL 338 (545)
T ss_pred cCccceeec
Confidence 666654443
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.06 E-value=0.0015 Score=71.82 Aligned_cols=195 Identities=12% Similarity=0.021 Sum_probs=104.4
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-------EeeeecCcEEEEEECCCC------CEEEEEeCCceE
Q 000992 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-------VVGRVEGGVRFISPSPDG------DLLGVTTGFGQI 140 (1196)
Q Consensus 74 ~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-------~vg~~~~~I~~~awSPDg------~~LA~~s~d~tV 140 (1196)
|...-.-++||||+..||.+...|+|.++|+.+..+- ..|.....|..+.|-+-- ..|.+.+-.|.+
T Consensus 42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 3457889999999999999999999999999875432 223334556666664321 112222333333
Q ss_pred EEEeccCceeeeeecccc--c--CccccccCcccc-CCCCeEEEEEccCCceEEEeeccccccCCCCE-------EEEEE
Q 000992 141 LVMTHDWDLLYENPLEEL--A--EGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKR-------LKVWE 208 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~--~--~~~~Vs~tqf~~-~~~~v~~isWspDG~~lAsvss~d~~~~~d~~-------irVWd 208 (1196)
+ ...+... . ...+ .-+|.. ...+|.++.|.|.-+.|. |++.... .++. +-.|-
T Consensus 122 ~----------Sy~vs~gt~q~y~e~h--sfsf~~~yp~Gi~~~vy~p~h~LLl-VgG~~~~--~~~~s~a~~~GLtaWR 186 (282)
T PF15492_consen 122 R----------SYLVSVGTNQGYQENH--SFSFSSHYPHGINSAVYHPKHRLLL-VGGCEQN--QDGMSKASSCGLTAWR 186 (282)
T ss_pred e----------eEEEEcccCCcceeeE--EEEecccCCCceeEEEEcCCCCEEE-EeccCCC--CCccccccccCceEEE
Confidence 1 1111100 0 0000 001112 246889999999999888 7873211 1111 11222
Q ss_pred CCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeE
Q 000992 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 209 ~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1196)
. +.=+|-.+.+.+...+-+ ....+-.||..-. .+-|.........|..++.||||+.||
T Consensus 187 i------------------L~~~Pyyk~v~~~~~~~~-~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 187 I------------------LSDSPYYKQVTSSEDDIT-ASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDGSLLA 245 (282)
T ss_pred E------------------cCCCCcEEEccccCcccc-ccccccceeeccc--eeeeeccccCCCceEEEEECCCCCEEE
Confidence 1 111344444332221110 0000112222110 001111122346799999999999999
Q ss_pred EEEccCCcceEEEEEecCC
Q 000992 289 AVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~ 307 (1196)
+....| .|-||++.+.
T Consensus 246 ~ih~sG---~lsLW~iPsL 261 (282)
T PF15492_consen 246 CIHFSG---SLSLWEIPSL 261 (282)
T ss_pred EEEcCC---eEEEEecCcc
Confidence 999999 8999999874
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.03 E-value=3.6e-05 Score=83.91 Aligned_cols=298 Identities=12% Similarity=0.125 Sum_probs=158.4
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC------------CCeEEEEEcc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF------------SFKSPISWRG 183 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~------------~~v~~isWsp 183 (1196)
..-|+++.|-.-|.+||+|...|.|.++.+.-.--. +.++. |.||+|+ ..|..|.|--
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c--------eykf~--teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC--------EYKFF--TEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccccc--------chhhh--hhhcccccchhhhhhccHHHHhhheeeec
Confidence 356999999999999999888899988754311101 12222 2233222 4578899987
Q ss_pred CCc--eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC-C--CCCCeEEEEeCC
Q 000992 184 DGK--YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS-E--NKCPSIVFYERN 258 (1196)
Q Consensus 184 DG~--~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~-~--~~~~~V~~~e~n 258 (1196)
|++ .|. +++ .+++|++|-..+..+.-..+. .+-.++. +|-|--+.|.+.-.- + ...--|....+
T Consensus 96 ~t~r~hFL-lst------NdktiKlWKiyeknlk~va~n--nls~~~~-~~~~g~~~s~~~l~lprls~hd~iiaa~p~- 164 (460)
T COG5170 96 DTGRNHFL-LST------NDKTIKLWKIYEKNLKVVAEN--NLSDSFH-SPMGGPLTSTKELLLPRLSEHDEIIAAKPC- 164 (460)
T ss_pred CCCcceEE-Eec------CCceeeeeeeecccchhhhcc--ccccccc-cccCCCcCCHHHhhcccccccceEEEeccc-
Confidence 775 233 343 579999998855433322221 1111221 232222222211000 0 00001111111
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE-EEEEEEEEEec----CCc-EEEEEccCCC
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH-WYLKYEIRYLR----RDG-IRFMWHPTKP 332 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~-wylkq~l~~~~----~~~-~~v~Wsp~~~ 332 (1196)
| .....|...|++|+++.|-+.+.++..-+ |-||+..-.. .+-.-.+.-+. ..+ ++..|||+..
T Consensus 165 --r----vyaNaH~yhiNSiS~NsD~et~lSaDdLr----INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c 234 (460)
T COG5170 165 --R----VYANAHPYHINSISFNSDKETLLSADDLR----INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC 234 (460)
T ss_pred --e----eccccceeEeeeeeecCchheeeecccee----eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc
Confidence 0 00022345699999999999999987665 9999976321 11111111111 123 6788999999
Q ss_pred ceEEEEecCCcEEEEEEEEeeecCCCe--eEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE
Q 000992 333 LQLICWTLDGQITTYNFIWTTAVMENS--TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 333 ~~L~~~~~~g~~~~~~~~~~~~~~d~~--~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lA 409 (1196)
..++..+..|.+...+..-+.-+++.. ....+||-.+ .-+ +.-+.|.++-||++| +.++
T Consensus 235 n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~----------------~ff~eivsSISD~kFs~ng--ryIl 296 (460)
T COG5170 235 NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV----------------DFFEEIVSSISDFKFSDNG--RYIL 296 (460)
T ss_pred ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc----------------hhHHHHhhhhcceEEcCCC--cEEE
Confidence 888888888888765543221111100 0011222111 111 234678899999999 7777
Q ss_pred EEECCCcEEEEeCCCCCccccccCCceeeeeecc------cccCCcE---EEEEEecCCeEEEEEecC
Q 000992 410 AILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS------ETAFGSV---IHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 410 s~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~v---~~l~~~~d~~lla~~~~~ 468 (1196)
+-+. .+|+||++.....+ + +.+.+. +.. .-+.+.+ ..+.||.|+.-+.++++.
T Consensus 297 sRdy-ltvkiwDvnm~k~p--i--kTi~~h-~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 297 SRDY-LTVKIWDVNMAKNP--I--KTIPMH-CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred Eecc-ceEEEEecccccCC--c--eeechH-HHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 6543 59999998642211 0 011111 111 0122322 457899999988888774
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.96 E-value=0.0089 Score=66.52 Aligned_cols=229 Identities=15% Similarity=0.067 Sum_probs=131.9
Q ss_pred EEEEcc-CCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEEC-CCCCEEEEEeCCceEEEEe-ccC--ceeeeee
Q 000992 80 AFDYLM-EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPS-PDGDLLGVTTGFGQILVMT-HDW--DLLYENP 154 (1196)
Q Consensus 80 ~v~~sp-d~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awS-PDg~~LA~~s~d~tV~l~~-~~~--d~~~~~~ 154 (1196)
++.|.+ ++..+++-...|.|.-|+..++....... .+...+++. |||.+++ +...+..++ + ... ..+....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~~~G~~~~~~~g~l~v-~~~~~~~~~-d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PGPNGMAFDRPDGRLYV-ADSGGIAVV-DPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SSEEEEEEECTTSEEEE-EETTCEEEE-ETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CCCceEEEEccCCEEEE-EEcCceEEE-ecCCCcEEEEeecc
Confidence 467888 66666776778999999999987765442 236777777 7755554 455544433 3 111 1111111
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCC--CEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLH--KRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d--~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
- . . ........+++.|||.+.++....... ... +.|..++. +|+.....+... ..+.|+|+|
T Consensus 80 ~---~-~---------~~~~~~ND~~vd~~G~ly~t~~~~~~~-~~~~~g~v~~~~~-~~~~~~~~~~~~-~pNGi~~s~ 143 (246)
T PF08450_consen 80 D---G-G---------VPFNRPNDVAVDPDGNLYVTDSGGGGA-SGIDPGSVYRIDP-DGKVTVVADGLG-FPNGIAFSP 143 (246)
T ss_dssp T---T-C---------SCTEEEEEEEE-TTS-EEEEEECCBCT-TCGGSEEEEEEET-TSEEEEEEEEES-SEEEEEEET
T ss_pred C---C-C---------cccCCCceEEEcCCCCEEEEecCCCcc-ccccccceEEECC-CCeEEEEecCcc-cccceEECC
Confidence 0 0 0 011245789999999988743321111 111 56777888 477666555433 348999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC--Ce-eE-EEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN--GL-ER-SSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n--Gl-~~-~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
||+.+..+... ...|.-|+.+ +. .. .......+. .+..-.+++.++|.+.++....+ .|+.++....
T Consensus 144 dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~---~I~~~~p~G~ 215 (246)
T PF08450_consen 144 DGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG---RIVVFDPDGK 215 (246)
T ss_dssp TSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT---EEEEEETTSC
T ss_pred cchheeecccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC---EEEEECCCcc
Confidence 99977665443 3467666643 32 11 111122121 12477899999999888766555 7988887742
Q ss_pred EEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
+...+..+....+.+.|......+|.+.+
T Consensus 216 ---~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 ---LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 34566665334488888544444566544
No 290
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.85 E-value=0.0023 Score=71.42 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=156.2
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.+...-+-.+.|+.+|+|..+..|--- ..++- |.. +. + .. ...+.++.|.++...|.++..+|++.-+
T Consensus 27 vn~~~l~~~e~gv~~~s~drtvrv~lkr-ds~q~-wps------I~-~-~m-P~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 27 VNAAILIPKEEGVISVSEDRTVRVWLKR-DSGQY-WPS------IY-H-YM-PSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhheeccCCCCeEEccccceeeeEEec-ccccc-Cch------hh-h-hC-CCCceEeeeeccceEEEEEEecceEEEE
Confidence 3444444667788999998877666320 11111 110 11 1 11 3578999999999999999999999988
Q ss_pred ECCC--C---eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCe
Q 000992 103 SVDG--N---ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 103 ~~~~--~---~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.... . .+...-.|.+.|.++-||---+++.+.+.|..+.-.. +...-+....
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~---------------------- 153 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN---------------------- 153 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE----------------------
Confidence 7643 1 2234456788999999999999999999998774332 2222221111
Q ss_pred EEEEEccCCceEE---EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 177 SPISWRGDGKYFA---TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 177 ~~isWspDG~~lA---svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
-++|--+-++.+ .++-.. ..-...|+... .-.+..+..+|.+.+.+++|-|-..++-|+..| ..|.
T Consensus 154 -~~~~~t~~~~d~~~~fvGd~~---gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d------~~vi 222 (404)
T KOG1409|consen 154 -FETPASALQFDALYAFVGDHS---GQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD------HSVI 222 (404)
T ss_pred -eeccCCCCceeeEEEEecccc---cceEEEEEeec-CCceEEEEcCcccceEEEEEcCCCcEEEecccc------CceE
Confidence 112222222222 122111 01123455555 667888899999999999999999999999875 5688
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.|+.-|.+-....+.++ ...|..+..-+--+.|.++..|+ .|-+|++++
T Consensus 223 ~wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg---~i~~w~mn~ 271 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDG---GIVVWNMNV 271 (404)
T ss_pred EEeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCC---eEEEEeccc
Confidence 99986654333444433 35688888888889999999999 899999986
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.84 E-value=0.0085 Score=67.78 Aligned_cols=220 Identities=11% Similarity=0.008 Sum_probs=123.6
Q ss_pred eEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc--eeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 176 KSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM--GAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 176 v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~--v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.-.++.+| ++..+| ++- .| -.-.-+||..+|+......+.++. ...-.|||||+++.++..+. ......|
T Consensus 7 gH~~a~~p~~~~ava-faR-RP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~-~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVA-FAR-RP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY-ETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEE-EEe-CC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc-CCCcEEE
Confidence 34688889 455555 553 22 256788999899988877654443 35678999999999887654 2346788
Q ss_pred EEEeCC-Ce-eEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcc---------------eEEEEEecCCEEEEEE
Q 000992 253 VFYERN-GL-ERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYD---------------SVKICFFSNNHWYLKY 313 (1196)
Q Consensus 253 ~~~e~n-Gl-~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~---------------~V~lW~~~n~~wylkq 313 (1196)
.+|+.. +. +.+||... +|| +|.|.|||+.|+++-..-..+ .+-+-|..+..-.-+.
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 899976 44 45666544 333 689999999998875322100 2222222222211111
Q ss_pred EE--EEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC-CeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 314 EI--RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME-NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 314 ~l--~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d-~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
++ ..++.+...++|++++. +. ....|.-.+.+ .-+++..+.... +..+ ..|++. ...+
T Consensus 155 ~Lp~~~~~lSiRHLa~~~~G~-----------V~-~a~Q~qg~~~~~~PLva~~~~g~~-~~~~---~~p~~~---~~~l 215 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDGDGT-----------VA-FAMQYQGDPGDAPPLVALHRRGGA-LRLL---PAPEEQ---WRRL 215 (305)
T ss_pred ecCccccccceeeEEecCCCc-----------EE-EEEecCCCCCccCCeEEEEcCCCc-ceec---cCChHH---HHhh
Confidence 11 11111224455555442 21 11223322211 234555554442 1122 112221 1235
Q ss_pred CCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCCCCcc
Q 000992 391 PTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPAPDML 428 (1196)
Q Consensus 391 ~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~~~~~ 428 (1196)
...|-+|+|++++ ..+|+.+- -|.+.+|+..+....
T Consensus 216 ~~Y~gSIa~~~~g--~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 216 NGYIGSIAADRDG--RLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred CCceEEEEEeCCC--CEEEEECCCCCEEEEEECCCCCEe
Confidence 6789999999999 77766554 579999998865433
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.83 E-value=0.00024 Score=77.73 Aligned_cols=216 Identities=18% Similarity=0.198 Sum_probs=134.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EE-----Eeee------------ecCcEEEEEECCCCCE--EEEE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TE-----VVGR------------VEGGVRFISPSPDGDL--LGVT 134 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e-----~vg~------------~~~~I~~~awSPDg~~--LA~~ 134 (1196)
.+.|++|.|-..|.+|++|-..|.|.++..+... +| ...+ +...|.++.|--|+.+ ....
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4689999999999999999999999999875311 11 1111 2356999999888764 5667
Q ss_pred eCCceEEEEe---ccCceeeeeeccccc---Cccccc------cCccc----------------cCCCCeEEEEEccCCc
Q 000992 135 TGFGQILVMT---HDWDLLYENPLEELA---EGFDVH------EPELS----------------SSFSFKSPISWRGDGK 186 (1196)
Q Consensus 135 s~d~tV~l~~---~~~d~~~~~~l~~~~---~~~~Vs------~tqf~----------------~~~~~v~~isWspDG~ 186 (1196)
+.|+||++|. +.-.++.+-.+...- .+++++ +.+.. .|.-.+.+|++..|-+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999994 333333333222111 122332 11111 4666788999999999
Q ss_pred eEEEeeccccccCCCCEEEEEECC--CCcEE-EEeccCC-----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERD--SGTLQ-ASSELKA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~--~G~l~-~~~e~~~-----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
++. ++ .+=.|.+|+.+ +|..- --..|+. ..+.+--|+|.-..+-.-|.. ++.|++.+..
T Consensus 186 t~l-Sa-------DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-----kG~Ikl~DlR 252 (460)
T COG5170 186 TLL-SA-------DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-----KGEIKLNDLR 252 (460)
T ss_pred eee-ec-------cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-----CCcEEehhhh
Confidence 998 34 25689999984 22211 1123332 235788899986544333222 3568777631
Q ss_pred --Ce---eEEEEEeccC---------CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 259 --GL---ERSSFDINEQ---------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 259 --Gl---~~~~f~l~~~---------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
.+ ....|.+... ...+|..+.|||+|+++++.... +|+|||+++-
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl----tvkiwDvnm~ 311 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL----TVKIWDVNMA 311 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc----eEEEEecccc
Confidence 00 1111211110 12458889999999999987665 6999999864
No 293
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.76 E-value=0.017 Score=76.68 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=98.8
Q ss_pred hhCHHHHHHHHHHcCC-------CcHHHHHHHHHHHhcChHHHHhhc---C----CcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 944 LQRFENALKHIVSMGD-------SYHADCLNLMKKYAQLFPLGLKLI---T----DPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~-------~~~~~ale~~~~~~~ly~~AL~L~---~----d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
.|++++|.+.|.++.+ ..+...+..+.+. +.+++|+++| . .|. ...+....+-+...+++++|
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~PD--~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKPD--EVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHH
Confidence 4677888877776532 1245667777777 8888888877 1 222 12334444556667788888
Q ss_pred HHHHHhCCC---------HHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1010 ATTYFCCSS---------LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1010 a~~y~~ag~---------~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
..+|....+ |.-.+.+|.++|++++|+.+-..+ +..++ ...+..+...+.+.|++++|.+++.++.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777766432 355667788888888877665543 22222 2356677777778888888888877643
Q ss_pred CC--------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1078 GD--------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1078 ~d--------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.. +...+..|++.+++++|..+-..
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 21 55667778888888888766443
No 294
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.00024 Score=82.05 Aligned_cols=288 Identities=12% Similarity=-0.015 Sum_probs=164.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE--EEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEeccCcee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
.+.|..|.|...|..|+++|.|-.|.+||...+.. ...++|...|....|=| +-..|++.+.||+|++-... .
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~---~ 218 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL---E 218 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec---c
Confidence 47899999999999999999999999999876543 34455677787777755 34789999999999763211 0
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE---EeccCCC---c
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA---SSELKAF---M 224 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~---~~e~~~~---~ 224 (1196)
++..-.+ + ..-.|.+.+..++--|+..+-. .+. ++|+.++=.|+.++..-. +-+.... .
T Consensus 219 t~~~e~t----~-----rl~~h~g~vhklav~p~sp~~f-~S~-----geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 219 TGYVENT----K-----RLAPHEGPVHKLAVEPDSPKPF-LSC-----GEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred ccceecc----e-----ecccccCccceeeecCCCCCcc-ccc-----ccccceeeeeeccCCccceeeeeccCCcccee
Confidence 1111000 0 0113556677888878776533 222 257788877775553322 2222222 2
Q ss_pred eeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC--------CCeeEEEEEec---cCCCCcEEEEEEccC-CCeeEEEE
Q 000992 225 GAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER--------NGLERSSFDIN---EQIDSTVELLKWNCM-SDLLAAVV 291 (1196)
Q Consensus 225 v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~--------nGl~~~~f~l~---~~~~~~V~~laWSpD-g~~LAs~~ 291 (1196)
..+|+-.|... .+|+++.+. -+++++. ||.. ..|.-+ ......|..+++|.+ |++||+..
T Consensus 284 L~~Ia~~P~nt~~faVgG~dq------f~RvYD~R~~~~e~~n~~~-~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQ------FARVYDQRRIDKEENNGVL-DKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred eeeEecCCCCccccccCChhh------hhhhhcccchhhccccchh-hhcCCccccccCcccceeEEecCCccceeeeec
Confidence 37899999775 788887753 3445542 3311 123211 112346999999955 55666665
Q ss_pred ccCCcceEEEEEecCCE------------EEEEEEEEEecCCcE--EE-EEccCCCceEEEEecCCcEEEEEEEEeeecC
Q 000992 292 RFEEYDSVKICFFSNNH------------WYLKYEIRYLRRDGI--RF-MWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~------------wylkq~l~~~~~~~~--~v-~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1196)
... |.|++- ++. -|.|+.+..|.+..+ .+ .|-|.
T Consensus 357 De~----IYLF~~-~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-------------------------- 405 (559)
T KOG1334|consen 357 DED----IYLFNK-SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR-------------------------- 405 (559)
T ss_pred ccc----eEEecc-ccccCCCCCCCcchhhccchhhcccccccccceeeeccCc--------------------------
Confidence 554 888843 221 122332222222110 01 12222
Q ss_pred CCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 357 d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
..-++...|-.+|.+|.-+.+.+-.-|-. -..-|+|+-=+|-- ..||+.+-|..|+||...+
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~~Meg----Dr~VVNCLEpHP~~--PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEG----DRHVVNCLEPHPHL--PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cceEEecCccceEEEEecchhHHHHHhhc----ccceEeccCCCCCC--chhhccCCccceeeecCCc
Confidence 22233334444555555443322111110 11246777756655 6899999999999998744
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.75 E-value=0.0024 Score=69.17 Aligned_cols=227 Identities=11% Similarity=-0.001 Sum_probs=129.9
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEe
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV 112 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~v 112 (1196)
++|+.+...++.-.|.. .++++..++.+.. ..+..+ +.-.+-+ .--+-+++.|.|+++...+.+.....
T Consensus 85 ~~la~gG~~g~fd~~~~--~tn~~h~~~cd~s--nn~v~~-----~~r~cd~--~~~~~i~sndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFAC--NTNDGHLYQCDVS--NNDVTL-----VKRYCDL--KFPLNIASNDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred cEEEeccccceeeeecc--cCcccceeeeccc--ccchhh-----hhhhccc--ccceeeccCCcceeEEEEecCcccce
Confidence 45555556667777887 5565544432111 111101 0001001 12345678888888888776543322
Q ss_pred eeec-CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 113 GRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 113 g~~~-~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
-+.. -.+..++.|||++++++++....|-.+..+-+. +..... ...+..+.-.+.+||.....|| +
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s--ey~~~~----------~~a~t~D~gF~~S~s~~~~~FA-v 220 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES--EYIENI----------YEAPTSDHGFYNSFSENDLQFA-V 220 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc--ceeeee----------EecccCCCceeeeeccCcceEE-E
Confidence 2222 348899999999999999998888776533221 111110 0002234557899999999999 7
Q ss_pred eccccccCCCCEEEEEECCC-CcEEE----EeccCCCceeEEEEcCCCCe-EEEEecCCCCCCCCeEEEEe-CCCeeEEE
Q 000992 192 SEFCNSSKLHKRLKVWERDS-GTLQA----SSELKAFMGAVLEWMPSGAN-IAAVYDRKSENKCPSIVFYE-RNGLERSS 264 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~-G~l~~----~~e~~~~~v~slawsPdG~~-IAs~s~d~~~~~~~~V~~~e-~nGl~~~~ 264 (1196)
++ .|+++.|||... +.+.. +-..|.|.+..+.|+|-|-+ |..-+.. -..+.+.+ ||+..+..
T Consensus 221 ~~------Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-----fs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 221 VF------QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-----FSRVHVVDTRNYVNHQV 289 (344)
T ss_pred Ee------cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-----cceEEEEEcccCceeeE
Confidence 76 579999999753 32222 12347889999999997752 1222221 12355555 67766654
Q ss_pred EEec-----cCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 265 FDIN-----EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 265 f~l~-----~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
..++ .|.+..|..-.|+.+++-.-+..++.
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccchh
Confidence 3332 12223466666777766666555554
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.73 E-value=0.0003 Score=79.97 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=98.3
Q ss_pred eeecCCCEEEEEeCCCcE--EEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE---
Q 000992 27 ALDIEQNRLFFASSANNI--YSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL--- 101 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l--- 101 (1196)
.....+..|+++..+.+. +.+.- ..+ . ++.- + .... .-...++.|..+.....++-..|++..
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~--~~~-~-~kl~--~--~~~v----~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRE--NPK-G-AKLL--D--VSCV----PKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEec--CCC-c-ceee--e--Eeec----ccCcceeeeeeccceEEEEeecCCceeeee
Confidence 344556777777666664 44444 222 1 1210 0 0111 124556666666666666666666555
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+...+..+ ++|| -.-++.++||||++.|.++..|+.|++- |-|-. ++-++-+.||..-|.+++
T Consensus 137 ~s~~~~~~~~~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs---~ypa~-----------f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 137 LSADSGRCEPILGH-VSMLLDVAVSPDDQFIITADRDEKIRVS---RYPAT-----------FVIESFCLGHKEFVSTIS 201 (390)
T ss_pred ecccccCcchhhhh-hhhhheeeecCCCCEEEEecCCceEEEE---ecCcc-----------cchhhhccccHhheeeee
Confidence 555535544 7886 5779999999999999999999999763 21110 000112225666778888
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
--+ ++.|. +|+ +|+++|+||..+|+++.+++
T Consensus 202 l~~-~~~Ll-S~s------GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 LTD-NYLLL-SGS------GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ecc-Cceee-ecC------CCCcEEEEecccCCcccccc
Confidence 764 55677 454 68999999999999887664
No 297
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.73 E-value=6.5e-05 Score=86.09 Aligned_cols=187 Identities=16% Similarity=0.217 Sum_probs=131.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
..|..+.|+|--=.|++++..|-++--|+.+|++- ..-.-.+.+..++=+|=.-.+-+|-..|+|.+|+. ....+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP----~skeP 285 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP----NSKEP 285 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC----CCcch
Confidence 57888999999889999999999998999887652 11111467889999999999999999999998763 23223
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEcCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slawsPd 233 (1196)
+... .-|.+.|.+|+..++|+|.|| ++ -|+.++|||...= +++....++ ....+++|.-
T Consensus 286 LvKi-----------LcH~g~V~siAv~~~G~YMaT-tG------~Dr~~kIWDlR~~~ql~t~~tp~--~a~~ls~Sqk 345 (545)
T KOG1272|consen 286 LVKI-----------LCHRGPVSSIAVDRGGRYMAT-TG------LDRKVKIWDLRNFYQLHTYRTPH--PASNLSLSQK 345 (545)
T ss_pred HHHH-----------HhcCCCcceEEECCCCcEEee-cc------cccceeEeeeccccccceeecCC--Cccccccccc
Confidence 2211 135567799999999999994 54 4799999998532 444444433 3478999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccC
Q 000992 234 GANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
|.+.++-+. -|.+|-- +|..++++..-.+ -.+.|.+|.|-|--++|-+|-..+
T Consensus 346 glLA~~~G~--------~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 346 GLLALSYGD--------HVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred cceeeecCC--------eeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 876555443 4788852 2212332211111 134799999999999998887665
No 298
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0016 Score=73.73 Aligned_cols=186 Identities=11% Similarity=0.069 Sum_probs=129.1
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECC--CcEEEEECCCCe
Q 000992 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSS--GLLLLHSVDGNA 108 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~d--G~I~lw~~~~~~ 108 (1196)
.+.|..|-+++.+..|+. -.+..... .+... ..++.+..|.=.|....++. |+.- ..+++||+++.+
T Consensus 115 dg~Litc~~sG~l~~~~~--k~~d~hss------~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHD--KSGDLHSS------KLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK 184 (412)
T ss_pred CCEEEEEecCCcEEEEec--cCCccccc------cceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccce
Confidence 355666666777888887 32221000 01111 11356777777777665554 6666 678999998752
Q ss_pred EEEe----------e-eecCcEEEEEECCC--CCEEEEEeCCceEEEEec--cCceeeeeecccccCccccccCccccCC
Q 000992 109 TEVV----------G-RVEGGVRFISPSPD--GDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 109 ~e~v----------g-~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~--~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
.+. | .+.-+++++.|=|+ ...+|++|.-+.|++++. .-.|+.++.+ ..
T Consensus 185 -qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~----------------~E 247 (412)
T KOG3881|consen 185 -QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF----------------LE 247 (412)
T ss_pred -eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc----------------cc
Confidence 211 1 13456788999888 899999999999988641 1233333322 23
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
..+.+++--|+|.++. ++. ..+.+..+|...|.+... +.+..|.+.+|.-.|.+.+||+++-|. -|
T Consensus 248 ~~is~~~l~p~gn~Iy-~gn------~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR------yv 314 (412)
T KOG3881|consen 248 NPISSTGLTPSGNFIY-TGN------TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR------YV 314 (412)
T ss_pred CcceeeeecCCCcEEE-Eec------ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce------eE
Confidence 4678999999999988 553 347899999989998887 788999999999999999999999874 58
Q ss_pred EEEeC
Q 000992 253 VFYER 257 (1196)
Q Consensus 253 ~~~e~ 257 (1196)
++|+.
T Consensus 315 RIhD~ 319 (412)
T KOG3881|consen 315 RIHDI 319 (412)
T ss_pred EEeec
Confidence 88984
No 299
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.00033 Score=80.99 Aligned_cols=253 Identities=12% Similarity=0.114 Sum_probs=154.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
-+..+-|.-.|+.+.++|+|.+++.||- ...... ...++ +| ...|---.|.| +.+.|++.++||.|
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW--~~~~~~---l~f~S---GH----~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDW--VSGSPK---LSFES---GH----CNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehh--hccCcc---ccccc---cc----ccchhhhhccCCCCCcCceeccccCce
Confidence 5667789999999999999999999997 333321 11111 12 12233334555 34788999999999
Q ss_pred EEEECC-CCeE---EEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCceeeee-----------------eccc
Q 000992 100 LLHSVD-GNAT---EVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYEN-----------------PLEE 157 (1196)
Q Consensus 100 ~lw~~~-~~~~---e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~-----------------~l~~ 157 (1196)
++=.+. ++.+ ..++.|.+.|.-++--|+.- -+.++++|+.|.-.+..-+.-++. ..++
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 985543 3444 36788999999999888854 577788898876433111111110 0000
Q ss_pred cc-Cccccc-cCccc---------------------c------CCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEE
Q 000992 158 LA-EGFDVH-EPELS---------------------S------SFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVW 207 (1196)
Q Consensus 158 ~~-~~~~Vs-~tqf~---------------------~------~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVW 207 (1196)
.. ..-.|. ..||. + ....|+++++|.|| ..|| +. .|-.|.++
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SY------nDe~IYLF 363 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SY------NDEDIYLF 363 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--ee------cccceEEe
Confidence 00 000010 11222 1 23468999999555 5666 43 24678888
Q ss_pred ECC--CC----------cEEEE-eccCCCc--eeEE-EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC
Q 000992 208 ERD--SG----------TLQAS-SELKAFM--GAVL-EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI 271 (1196)
Q Consensus 208 d~~--~G----------~l~~~-~e~~~~~--v~sl-awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~ 271 (1196)
+.. .| ..... ..+|... |..+ =|-|..+++.|||+ .+.|-||++++-.+-.| +.+.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD------CGhIFiW~K~t~eii~~-MegD- 435 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD------CGHIFIWDKKTGEIIRF-MEGD- 435 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc------cceEEEEecchhHHHHH-hhcc-
Confidence 653 34 11111 2344332 2233 27899999999998 45699999876433211 1121
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..-|+.|.=.|-=-+||+.+-|. -||||+-.
T Consensus 436 r~VVNCLEpHP~~PvLAsSGid~---DVKIWTP~ 466 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLPVLASSGIDH---DVKIWTPL 466 (559)
T ss_pred cceEeccCCCCCCchhhccCCcc---ceeeecCC
Confidence 23688898888889999999888 79999974
No 300
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.66 E-value=0.0028 Score=74.66 Aligned_cols=245 Identities=13% Similarity=0.127 Sum_probs=127.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEee--e-------e---------cCcEEEEEECCCCCEEEEEeCC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG--R-------V---------EGGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg--~-------~---------~~~I~~~awSPDg~~LA~~s~d 137 (1196)
..+....|||||+.+|.+. +++|.+++..++....+. . . -+.-.++-|||||+.||...-|
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4688899999999999886 689999998765432111 1 0 0112467799999999999654
Q ss_pred c-eEEEEecc-C--c----e-eeeeeccccc-Cc-cccc-------cC---------ccccCCCCeEEEEEccCCceEEE
Q 000992 138 G-QILVMTHD-W--D----L-LYENPLEELA-EG-FDVH-------EP---------ELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 138 ~-tV~l~~~~-~--d----~-~~~~~l~~~~-~~-~~Vs-------~t---------qf~~~~~~v~~isWspDG~~lAs 190 (1196)
. .|..+... + . | ...+.- +.. .. ..|. .. .+...+.-+..+.|++|++.|+
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~Y-Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~- 199 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRY-PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW- 199 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE---BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE-
T ss_pred CcCCceEEeeccCCccccCCccccccc-CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE-
Confidence 3 33332210 0 0 0 111110 000 00 0000 00 0113456688999999999555
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEe-ccCCCce---eEEEEc-CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMG---AVLEWM-PSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v---~slaws-PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
+...+-. -....+.+.|..+|...... +..++++ ....|. |+|..+.-.+...+ -..|-+++.+|.....
T Consensus 200 ~~~~nR~-q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G---~~hly~~~~~~~~~~~- 274 (353)
T PF00930_consen 200 VQWLNRD-QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG---YRHLYLYDLDGGKPRQ- 274 (353)
T ss_dssp EEEEETT-STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS---SEEEEEEETTSSEEEE-
T ss_pred EEEcccC-CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC---CcEEEEEcccccceec-
Confidence 3332211 12345667788777665443 3344444 466665 88887766655321 4567777877654332
Q ss_pred EeccCCCCcEE-EEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe-cCCc--EEEEEccCCCc
Q 000992 266 DINEQIDSTVE-LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL-RRDG--IRFMWHPTKPL 333 (1196)
Q Consensus 266 ~l~~~~~~~V~-~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~-~~~~--~~v~Wsp~~~~ 333 (1196)
|. .+.-.|. -+.|+++++.|...+....-..-+||.++-.. ..++..- .... ..+.+||++..
T Consensus 275 -lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~---~~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 275 -LT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS---GGEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp -SS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE---TTEEEESSTTSSTTEEEEE-TTSSE
T ss_pred -cc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC---CCCeEeccCCCCCceEEEECCCCCE
Confidence 22 2334564 48899998877765554211124455543210 0111111 1112 46778887765
No 301
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.66 E-value=0.0034 Score=80.83 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=122.0
Q ss_pred ccHHHH--hhCHHHHHHHHHHcCCC---cHHHHHHHHHHHhcChHHHHhhc-C--------CcHHHHHHHHHHHHHHhcc
Q 000992 938 YTIDLR--LQRFENALKHIVSMGDS---YHADCLNLMKKYAQLFPLGLKLI-T--------DPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 938 ~~Id~~--L~ry~~Al~~l~~~g~~---~~~~ale~~~~~~~ly~~AL~L~-~--------d~~~~~~i~~~~A~~L~~~ 1003 (1196)
..|++| .|++++|.+.|.++.+. -+...+..+.++ +.+++|++++ . |...+..++ .-+...
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll----~a~~~~ 439 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH-GRGTKAVEMFERMIAEGVAPNHVTFLAVL----SACRYS 439 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHHhcC
Confidence 466766 57899999999987531 257778888999 9999999998 1 222344444 556678
Q ss_pred cCHHHHHHHHHhCC----------CHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 1004 KCFEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag----------~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
+..++|..+|.... -|.--+++|.++|++++|+.+..+.+..++. .....+...+...|+++.|..++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~--~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV--NMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999998763 2556789999999999999998887655443 35777888888899999998887
Q ss_pred HHh-------cCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1074 LDY-------CGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1074 ~~y-------l~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+- .+.+...+.+|++.++|++|.++-..
T Consensus 518 ~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 763 24677889999999999999988654
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.037 Score=67.66 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=82.2
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCC-CeEEEeeeecCcEEEEEECCCC------------CEEEEEeCCceEEEE
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPDG------------DLLGVTTGFGQILVM 143 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPDg------------~~LA~~s~d~tV~l~ 143 (1196)
.-.++.|+|.| .+|.|+.+ -|.+.|..+ +.+..+..|...|+.+.|+|-- =+||++.-.|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678899987 56666543 466777766 4566788889999999998731 257777778899887
Q ss_pred ec-cCceeeeeecccccCccccccCccccCCCCeEEEEE---ccCCce-EEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 144 TH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW---RGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 144 ~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW---spDG~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
+- ..-.+.. |+.+.+.+..+.| ++|.+. |+.+. +..++-+||.++|++....
T Consensus 95 d~~~~s~~~~----------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh-------~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 95 DFVLASVINW----------------LSHSNDSVQDLCWVPARDDSRDVLLAIH-------GSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred Eehhhhhhhh----------------hcCCCcchhheeeeeccCcchheeEEec-------CCcEEEEEEccCCceeecc
Confidence 52 1111111 1123344455554 677844 44232 3479999999999988765
Q ss_pred ccCCCceeEEEEcC
Q 000992 219 ELKAFMGAVLEWMP 232 (1196)
Q Consensus 219 e~~~~~v~slawsP 232 (1196)
...+....++.+-|
T Consensus 152 ~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDP 165 (1062)
T ss_pred ccCCcceeeeeeCC
Confidence 43333334455544
No 303
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00026 Score=82.01 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=114.7
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec--cCceeeeeecccccCccccccCcc--ccCCCCeEEEEEccCCc
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPEL--SSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~--~~d~~~~~~l~~~~~~~~Vs~tqf--~~~~~~v~~isWspDG~ 186 (1196)
.+| |...|.+++==.+.+..++++.|+||++|+. .+|.+.. +.-|| +.|...+.+|.|-.|-+
T Consensus 731 f~G-H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t------------saCQfTY~aHkk~i~~igfL~~lr 797 (1034)
T KOG4190|consen 731 FTG-HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT------------SACQFTYQAHKKPIHDIGFLADLR 797 (1034)
T ss_pred ccC-cHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc------------ceeeeEhhhccCcccceeeeeccc
Confidence 455 5777887766667788999999999999973 2222211 11222 26677789999999999
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEec--cCCCceeEEEEcCC-CC--eEEEEecCCCCCCCCeEEEEe-CCCe
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LKAFMGAVLEWMPS-GA--NIAAVYDRKSENKCPSIVFYE-RNGL 260 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--~~~~~v~slawsPd-G~--~IAs~s~d~~~~~~~~V~~~e-~nGl 260 (1196)
++|+ . |+.|.+||+--|.+++..+ +..+.+..+.--|+ .+ +||.++.. .+|++|+ |.+.
T Consensus 798 ~i~S-c--------D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae------STVKl~DaRsce 862 (1034)
T KOG4190|consen 798 SIAS-C--------DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE------STVKLFDARSCE 862 (1034)
T ss_pred eeee-c--------cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch------hhheeeeccccc
Confidence 9983 2 5789999998888877443 34444455555555 22 45555553 5799998 4444
Q ss_pred eEEEEEec-cCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 261 ERSSFDIN-EQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 261 ~~~~f~l~-~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
-.-++..- .+. .+.+..++--|.|..||.+.+.+ +|-+.|..|+.
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG---ci~~LDaR~G~ 909 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG---CIAILDARNGK 909 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC---cEEEEecCCCc
Confidence 44444332 222 35689999999999999999999 89888888753
No 304
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.59 E-value=0.01 Score=71.65 Aligned_cols=140 Identities=12% Similarity=0.092 Sum_probs=83.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecc
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~ 156 (1196)
.+.+++|+|.|+.+++ ..+|...|+.....+-...|. =..++|+++++ .|+....++|.+. ++++......+.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~----g~~~vw~~~n~-yAv~~~~~~I~I~-kn~~~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGS----GLSFVWSSRNR-YAVLESSSTIKIY-KNFKNEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-----SEEEE-TSSE-EEEE-TTS-EEEE-ETTEE-TT----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCc----eeEEEEecCcc-EEEEECCCeEEEE-EcCccccceEEc
Confidence 5889999999999998 568999999966544444453 25678999655 6777778888886 444432211111
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
.. ..+-.|-- |..|. +.+ ++.|.+||.++|+++...+- .+ +..+.|||+|++
T Consensus 107 ~~---------------~~~~~If~---G~LL~-~~~-------~~~i~~yDw~~~~~i~~i~v-~~-vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 107 LP---------------FSVEKIFG---GNLLG-VKS-------SDFICFYDWETGKLIRRIDV-SA-VKYVIWSDDGEL 158 (443)
T ss_dssp -S---------------S-EEEEE----SSSEE-EEE-------TTEEEEE-TTT--EEEEESS--E--EEEEE-TTSSE
T ss_pred CC---------------cccceEEc---CcEEE-EEC-------CCCEEEEEhhHcceeeEEec-CC-CcEEEEECCCCE
Confidence 11 01222322 99888 654 35799999989999988763 22 789999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCC
Q 000992 237 IAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+|-.+.+ .+.+++.|
T Consensus 159 val~t~~-------~i~il~~~ 173 (443)
T PF04053_consen 159 VALVTKD-------SIYILKYN 173 (443)
T ss_dssp EEEE-S--------SEEEEEE-
T ss_pred EEEEeCC-------eEEEEEec
Confidence 9999864 47676654
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.55 E-value=0.00075 Score=76.76 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=96.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEEEecc-----CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHD-----WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-----~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
..+..+..||+|++||.++.++...+..-. +..+...++.. .-..|++--+..+.. +
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-----------------~~~ai~~~~~~~sv~-v 124 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-----------------RPTAISFIREDTSVL-V 124 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-----------------CcceeeeeeccceEE-E
Confidence 456777889999999999888775443211 22222222111 113444444444433 2
Q ss_pred eccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccC
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQ 270 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~ 270 (1196)
+-. .+....+.+|+..+|.+..+ -+|-.++..|+||||++.|.++.+|. .|++-+ .+--....|. ..
T Consensus 125 ~dk---agD~~~~di~s~~~~~~~~~-lGhvSml~dVavS~D~~~IitaDRDE------kIRvs~ypa~f~Iesfc--lG 192 (390)
T KOG3914|consen 125 ADK---AGDVYSFDILSADSGRCEPI-LGHVSMLLDVAVSPDDQFIITADRDE------KIRVSRYPATFVIESFC--LG 192 (390)
T ss_pred Eee---cCCceeeeeecccccCcchh-hhhhhhhheeeecCCCCEEEEecCCc------eEEEEecCcccchhhhc--cc
Confidence 211 02456788888754554433 35777789999999999999998874 355433 2211111122 23
Q ss_pred CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 271 IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 271 ~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|...|..++.-++ +.|++++.|+ +|++|+..++.
T Consensus 193 H~eFVS~isl~~~-~~LlS~sGD~---tlr~Wd~~sgk 226 (390)
T KOG3914|consen 193 HKEFVSTISLTDN-YLLLSGSGDK---TLRLWDITSGK 226 (390)
T ss_pred cHhheeeeeeccC-ceeeecCCCC---cEEEEecccCC
Confidence 4556888887655 4589999998 99999998765
No 306
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.50 E-value=0.042 Score=70.87 Aligned_cols=158 Identities=15% Similarity=0.029 Sum_probs=98.7
Q ss_pred HhhCHHHHHHHHHHcC-----CC--cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 943 RLQRFENALKHIVSMG-----DS--YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 943 ~L~ry~~Al~~l~~~g-----~~--~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
..|++++|++.|.++. ++ -+...+..+.+. +.+++|.+++ .+-..-..++..+.+-+...|++++|.
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 3567788888776652 11 124445555666 7777777765 111111123333445555577888888
Q ss_pred HHHHhCC-----CHHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----
Q 000992 1011 TTYFCCS-----SLEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG---- 1078 (1196)
Q Consensus 1011 ~~y~~ag-----~~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~---- 1078 (1196)
.+|.... -|.-.+..|.+.|++++|+.+-.++ +..++.. .+..+...+...|+.++|.++|.....
T Consensus 381 ~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~--T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV--TFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 8877654 3456677788888888888766543 3333332 356667777788888888888776432
Q ss_pred -----CHHHHHHHHHHhcCHHHHHHHHHhc
Q 000992 1079 -----DVTNGISLLIDARDWEEALRVAFMH 1103 (1196)
Q Consensus 1079 -----d~~~Ai~~y~~~~~w~eA~rla~~~ 1103 (1196)
-+..-|++|++++++++|..+..+-
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 1455788888888888888877653
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0013 Score=80.84 Aligned_cols=139 Identities=16% Similarity=0.255 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC---CHHHHHHHHHHcCCHHHH
Q 000992 963 ADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSGV 1035 (1196)
Q Consensus 963 ~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag---~~~kAl~~y~~~g~w~~a 1035 (1196)
+.-++++.+. +||+.|+.|+ .|++..+.++++||+||..+|+|++|-..|+++= +...-+.-|..+...+++
T Consensus 338 e~kL~iL~kK-~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 338 ETKLDILFKK-NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHHHHHh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHH
Confidence 5567788888 9999999999 5888999999999999999999999988888763 222223333222222221
Q ss_pred HHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC------CHHHHHHHHHHhcCHHHHHHHHHhcCCc
Q 000992 1036 LTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------DVTNGISLLIDARDWEEALRVAFMHRRE 1106 (1196)
Q Consensus 1036 l~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d~~~Ai~~y~~~~~w~eA~rla~~~~~~ 1106 (1196)
-.....| ++...+...++..|= .+.|+-+.--+ |.+.+. |++.|++.+.+++..++|.+||.+++..
T Consensus 417 t~YLe~L~~~gla~~dhttlLLncY---iKlkd~~kL~e-fI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~h 492 (933)
T KOG2114|consen 417 TSYLEALHKKGLANSDHTTLLLNCY---IKLKDVEKLTE-FISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKH 492 (933)
T ss_pred HHHHHHHHHcccccchhHHHHHHHH---HHhcchHHHHH-HHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccC
Confidence 1111110 112222222222222 22233222222 233233 6999999999999999999999998863
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.014 Score=71.08 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=99.8
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC------C------eEEEEec
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG------A------NIAAVYD 242 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG------~------~IAs~s~ 242 (1196)
....+.|+|.| .|| -++. ..|-|-|..+-+++++.+.|...|.++.|.|-. . +||++..
T Consensus 17 N~~A~Dw~~~G-LiA-ygsh-------slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIA-YGSH-------SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred cccccccCccc-eEE-EecC-------ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 35789999998 677 4652 578888887999999999999999999998732 1 4666644
Q ss_pred CCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEc---cCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 243 RKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWN---CMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 243 d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWS---pDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
.+.|.+|+-- +-..- .+ .++...|.+++|= +|+ .+|+.-.... +|-||++.++.-.-|+...
T Consensus 88 ------~GrIil~d~~~~s~~~--~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss---~lvLwntdtG~k~Wk~~ys- 154 (1062)
T KOG1912|consen 88 ------SGRIILVDFVLASVIN--WL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSS---TLVLWNTDTGEKFWKYDYS- 154 (1062)
T ss_pred ------cCcEEEEEehhhhhhh--hh-cCCCcchhheeeeeccCcchheeEEecCCc---EEEEEEccCCceeeccccC-
Confidence 3568888731 11111 11 2334556677764 577 5666555555 8999987665432233221
Q ss_pred ecCCc-EEEEEccCCCceEEEEecCCcEEEEEEE
Q 000992 318 LRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1196)
Q Consensus 318 ~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1196)
... .++.++|=.+..+.+.+..|.+...++.
T Consensus 155 --~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 155 --HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred --CcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 233 5588999888878888877766655543
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.45 E-value=0.0014 Score=78.24 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=74.5
Q ss_pred CCEEEEEEcc-CCCEEEE----EECCCcEEE----EECCCCeEEEe--e--eecCcEEEEEECCCCCEEEEEeCCceEEE
Q 000992 76 DSITAFDYLM-EKEALIV----GTSSGLLLL----HSVDGNATEVV--G--RVEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1196)
Q Consensus 76 ~~v~~v~~sp-d~~~La~----as~dG~I~l----w~~~~~~~e~v--g--~~~~~I~~~awSPDg~~LA~~s~d~tV~l 142 (1196)
..+.++.||- +..++-+ .+.+|.+.+ |+...+++..+ . .....|.|.++||+++.|+.|..||+|++
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3467788876 3444433 356776654 55554444321 1 23578999999999999999999999999
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEEC
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER 209 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~ 209 (1196)
|+..-....-.... -....++|.|||.+|+ |++ +.+.+++||.
T Consensus 286 yD~~~~~t~~~ka~-----------------~~P~~iaWHp~gai~~-V~s------~qGelQ~FD~ 328 (545)
T PF11768_consen 286 YDTTRGVTLLAKAE-----------------FIPTLIAWHPDGAIFV-VGS------EQGELQCFDM 328 (545)
T ss_pred EEcCCCeeeeeeec-----------------ccceEEEEcCCCcEEE-EEc------CCceEEEEEe
Confidence 86432221111111 1236899999999999 776 4689999998
No 310
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.40 E-value=0.0077 Score=67.57 Aligned_cols=151 Identities=18% Similarity=0.132 Sum_probs=87.5
Q ss_pred cEEEEEECCCCCEEEEEe--CCc-eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc
Q 000992 118 GVRFISPSPDGDLLGVTT--GFG-QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s--~d~-tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~ 194 (1196)
.+.++++||||+.+|.++ .++ .+.++... ....... . .......+|++||...+ +..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~--~---------------g~~l~~PS~d~~g~~W~-v~~- 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVL--T---------------GGSLTRPSWDPDGWVWT-VDD- 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-Ccceeec--c---------------CCccccccccCCCCEEE-EEc-
Confidence 689999999999999988 333 34333221 1111110 0 12457889999998777 443
Q ss_pred ccccCCCCEEEEE-ECCCCcEEE--Eecc-CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEE----
Q 000992 195 CNSSKLHKRLKVW-ERDSGTLQA--SSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSF---- 265 (1196)
Q Consensus 195 d~~~~~d~~irVW-d~~~G~l~~--~~e~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f---- 265 (1196)
.+...+++ +..+|.... ..-+ ..+.|.++.+||||..+|....+.. ..+..|..-.+++.- ...+
T Consensus 85 -----~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 85 -----GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-GGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred -----CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCC-CCeEEEEEEEeCCCCCcceeccce
Confidence 23555666 332454333 2211 2227899999999999998875432 112223333343221 1111
Q ss_pred EeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 266 DINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.+.......+.+++|.+++++++.+...+
T Consensus 159 ~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred EecccccCcceeeeecCCCEEEEEeCCCC
Confidence 11111234689999999999887776554
No 311
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.36 E-value=0.14 Score=61.58 Aligned_cols=204 Identities=13% Similarity=0.043 Sum_probs=110.4
Q ss_pred EEEEEEccCCCEEEEE-ECCCc----EEEEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCce-----------
Q 000992 78 ITAFDYLMEKEALIVG-TSSGL----LLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQ----------- 139 (1196)
Q Consensus 78 v~~v~~spd~~~La~a-s~dG~----I~lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~t----------- 139 (1196)
+..+.+||||+.||.+ +.+|. |++.|+.+++.- .+.... -..++|++||+.+.....+..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4468999999999976 45555 899999998653 222211 123999999999988875442
Q ss_pred EEEEeccCceeeeeecccccCccccccCccccCCC-C-eEEEEEccCCceEEEeeccccccCCC-CEEEEEECCCC----
Q 000992 140 ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS-F-KSPISWRGDGKYFATLSEFCNSSKLH-KRLKVWERDSG---- 212 (1196)
Q Consensus 140 V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~-~-v~~isWspDG~~lAsvss~d~~~~~d-~~irVWd~~~G---- 212 (1196)
|..|.. +....+- .. -|.+.+. . ...+.+++||+++. +.+... .. ..+.+-+...+
T Consensus 204 v~~~~~-gt~~~~d--------~l----vfe~~~~~~~~~~~~~s~d~~~l~-i~~~~~---~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 204 VYRHKL-GTPQSED--------EL----VFEEPDEPFWFVSVSRSKDGRYLF-ISSSSG---TSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp EEEEET-TS-GGG---------EE----EEC-TTCTTSEEEEEE-TTSSEEE-EEEESS---SSEEEEEEEECCCTTTSS
T ss_pred EEEEEC-CCChHhC--------ee----EEeecCCCcEEEEEEecCcccEEE-EEEEcc---ccCCeEEEEeccccCCCc
Confidence 333322 2222210 01 1222122 2 57899999999987 554332 23 56888888554
Q ss_pred -cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee--EEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 213 -TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE--RSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 213 -~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~--~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
.........++....+... .+.++..+..+. ....|.-.+.+... +....+.. +...+.--.++..+..|+.
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEE
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCC---CCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEE
Confidence 4555555555655555555 444444433321 23445444433221 11111221 1222333444556777777
Q ss_pred EEccCCcceEEEEEec
Q 000992 290 VVRFEEYDSVKICFFS 305 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~ 305 (1196)
.........|++|+..
T Consensus 342 ~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 342 SYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEEEETT
T ss_pred EEEECCccEEEEEECC
Confidence 6666545578888887
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.35 E-value=0.00038 Score=53.77 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=31.2
Q ss_pred EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
.....|.+.|++++|+|++..||+++.|++|++|+
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34556789999999999999999999999999985
No 313
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.34 E-value=0.012 Score=73.67 Aligned_cols=191 Identities=14% Similarity=0.106 Sum_probs=103.6
Q ss_pred CCEEEEEEccCCCEEEEEE------CCCc--EEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEE-EEecc
Q 000992 76 DSITAFDYLMEKEALIVGT------SSGL--LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMTHD 146 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as------~dG~--I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~-l~~~~ 146 (1196)
..+.+.+.||||+.+|... .|+. |.+++..+........ ....+-+|||||+.|++++....+. +....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3678999999999998776 2444 4444543333222222 2488999999999999997543432 22211
Q ss_pred Cc-eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEE---EECCCCcEEEEe----
Q 000992 147 WD-LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKV---WERDSGTLQASS---- 218 (1196)
Q Consensus 147 ~d-~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irV---Wd~~~G~l~~~~---- 218 (1196)
.. .+....+.... . .+ ..+..|..+.|||||+.+|.+. +++|.| =....|+ ....
T Consensus 428 ~~gql~~~~vd~ge----~--~~--~~~g~Issl~wSpDG~RiA~i~--------~g~v~Va~Vvr~~~G~-~~l~~~~~ 490 (591)
T PRK13616 428 ATGQLARTPVDASA----V--AS--RVPGPISELQLSRDGVRAAMII--------GGKVYLAVVEQTEDGQ-YALTNPRE 490 (591)
T ss_pred CCceEEEEeccCch----h--hh--ccCCCcCeEEECCCCCEEEEEE--------CCEEEEEEEEeCCCCc-eeecccEE
Confidence 11 11111111110 0 00 1235689999999999999433 145555 3334665 2221
Q ss_pred --ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccC
Q 000992 219 --ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 219 --e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
........+++|.++|.++ .+..+. ...|...+.+|..... ++.. ....|.+|+=++ +++. +...++
T Consensus 491 l~~~l~~~~~~l~W~~~~~L~-V~~~~~----~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~-~~iy-v~~~~g 560 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDSLV-VGRSDP----EHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASP-STVY-VTDARA 560 (591)
T ss_pred eecccCCccccceEecCCEEE-EEecCC----CCceEEEecCCccccc--cCCCCccCceEEEecCC-ceEE-EEcCCc
Confidence 1223335789999999966 444332 2445555666654321 1211 123566777666 3333 334444
No 314
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.34 E-value=0.027 Score=66.85 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=109.5
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCC--cH----HHHHHHHHHHhcChHHHHhhc-----CCcH----HHHHHHHHHHHHHhc
Q 000992 938 YTIDLRLQRFENALKHIVSMGDS--YH----ADCLNLMKKYAQLFPLGLKLI-----TDPA----KMEQVLEAWADHLSD 1002 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~--~~----~~ale~~~~~~~ly~~AL~L~-----~d~~----~~~~i~~~~A~~L~~ 1002 (1196)
..+....|+|++|+..|.++-.. .. ..-...+.+. +.|++|++++ .+|. ....++..+|..+..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 44555678999999998877421 11 1123344667 8899998887 2222 123455677888888
Q ss_pred ccCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 1003 VKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
++++++|..+|.++-.. -....+|...|++++|+.+..+. ..++.........++..+...|++.+|...+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988886321 12336778888999988776553 1233333445667788888889999999888
Q ss_pred HHhcC---C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1074 LDYCG---D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1074 ~~yl~---d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+... + ...-+.+|++.+++++|+.+..+
T Consensus 273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 273 RRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77432 1 23346678888899999876654
No 315
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.30 E-value=0.0029 Score=79.02 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=80.0
Q ss_pred CcEEEEEECCCCCEEEEEeC------CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 117 GGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~------d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
..+.+++.||||+.+|.... |..-.||.-....-. ..+.. + ......+|+|||+.+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-------------g--~~~t~PsWspDG~~lw~ 413 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-------------G--HSLTRPSWSLDADAVWV 413 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-------------C--CCCCCceECCCCCceEE
Confidence 36889999999999999872 433344431111000 11110 1 12478999999998885
Q ss_pred eeccccccCCCCEEEEE-----------ECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE--EeC
Q 000992 191 LSEFCNSSKLHKRLKVW-----------ERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF--YER 257 (1196)
Q Consensus 191 vss~d~~~~~d~~irVW-----------d~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~--~e~ 257 (1196)
++. +++..++. +.+.|+... ..++.+.++.|||||+.||..... .|.+ -.+
T Consensus 414 v~d------g~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g-------~v~Va~Vvr 477 (591)
T PRK13616 414 VVD------GNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGG-------KVYLAVVEQ 477 (591)
T ss_pred Eec------CcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECC-------EEEEEEEEe
Confidence 432 12233443 332333322 235668999999999999987641 2333 233
Q ss_pred --CCeeE-EEE-EeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000992 258 --NGLER-SSF-DINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 258 --nGl~~-~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1196)
.|..+ +.. .+.......+.+++|.+|++++ ++..+
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~ 516 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSD 516 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEE-EEecC
Confidence 34211 100 0111112346889999999955 55444
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0029 Score=77.52 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=89.1
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCC-----CCEEEEEeCCceEEEEeccCceee-eeeccc
Q 000992 84 LMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPD-----GDLLGVTTGFGQILVMTHDWDLLY-ENPLEE 157 (1196)
Q Consensus 84 spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPD-----g~~LA~~s~d~tV~l~~~~~d~~~-~~~l~~ 157 (1196)
--+|+.++++|.||+|.+-...+.+-...-.+...|.+++++|| .+..++|+..| +++..|.|=.-. ...++
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~- 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS- 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-
Confidence 45799999999999999988876544443446789999999999 66788888777 777667662211 11122
Q ss_pred ccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce------eEEEEc
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG------AVLEWM 231 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v------~slaws 231 (1196)
...+.|.+|+|++ .++| =++ |--|||||+.+++.+...++....+ ..+.|.
T Consensus 158 -------------~~eG~I~~i~W~g--~lIA-Wan-------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 158 -------------EGEGPIHSIKWRG--NLIA-WAN-------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred -------------cCccceEEEEecC--cEEE-Eec-------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 2346789999985 5777 343 3458999997777666555433322 567777
Q ss_pred CCCCeEE
Q 000992 232 PSGANIA 238 (1196)
Q Consensus 232 PdG~~IA 238 (1196)
++.+++.
T Consensus 215 ~~~~LVI 221 (846)
T KOG2066|consen 215 DEDRLVI 221 (846)
T ss_pred CCCeEEE
Confidence 7766543
No 317
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.27 E-value=0.02 Score=63.73 Aligned_cols=193 Identities=16% Similarity=0.125 Sum_probs=102.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG~I 99 (1196)
.+.+++||+++++||++.+ ...|++++. . ++. ++.+++...+-.-+|+|.-++.+ +++. .++++
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~--~-G~v----------lr~i~l~g~~D~EgI~y~g~~~~-vl~~Er~~~L 88 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL--D-GKV----------LRRIPLDGFGDYEGITYLGNGRY-VLSEERDQRL 88 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET--T---E----------EEEEE-SS-SSEEEEEE-STTEE-EEEETTTTEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC--C-CCE----------EEEEeCCCCCCceeEEEECCCEE-EEEEcCCCcE
Confidence 6899999999999999977 556777776 2 333 22222322256889999877754 4455 48889
Q ss_pred EEEECC--CCeE-----E--Eee---eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccC
Q 000992 100 LLHSVD--GNAT-----E--VVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 100 ~lw~~~--~~~~-----e--~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
.+.+.+ +..+ . .+| ....|+..++|+|.++.|.++-+.....++...... ....+.... ...+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-~~~~~~~~~-~~~~~~~ 166 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-GGFDLFVSD-DQDLDDD 166 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE--HHHH-H
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-Cccceeecc-ccccccc
Confidence 887773 2211 1 122 234679999999999999988776655554322100 000000000 0000000
Q ss_pred ccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC---C------ceeEEEEcCCCCeE
Q 000992 168 ELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA---F------MGAVLEWMPSGANI 237 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~---~------~v~slawsPdG~~I 237 (1196)
. ..-.....+++.|.. .+++ .|. ..+.|-++|+ +|+..+...-.. + .-..|+|.|+|++.
T Consensus 167 ~--~~~~d~S~l~~~p~t~~lli-LS~------es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 167 K--LFVRDLSGLSYDPRTGHLLI-LSD------ESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp T----SS---EEEEETTTTEEEE-EET------TTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred c--ceeccccceEEcCCCCeEEE-EEC------CCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 0 011235788888865 5555 554 4689999998 999877653222 1 23789999999876
Q ss_pred EEE
Q 000992 238 AAV 240 (1196)
Q Consensus 238 As~ 240 (1196)
.++
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 665
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.26 E-value=0.00057 Score=52.80 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=35.1
Q ss_pred CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 212 GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 212 G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
|++..++++|.+.+.+++|+|++++||+++.| ..|++|+
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D------~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSD------GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETT------SEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCC------CEEEEEC
Confidence 56788889999999999999999999999986 4699996
No 319
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.23 E-value=0.0054 Score=77.83 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=89.6
Q ss_pred cCCcchhhHHHHHHhcCCh-----hhhcccHHHHhhCHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhh
Q 000992 915 QRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKL 982 (1196)
Q Consensus 915 q~DpkeYlpfL~~L~~l~~-----~~~r~~Id~~L~ry~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L 982 (1196)
+.++.+.+..+++.-.+++ .+.++.+...+|+|++|+..|.++ .++.. ..+. ...+. +.|++|+..
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~-~~~~~-g~~~eA~~~ 455 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV-TQYKE-GSIASSMAT 455 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH-HHHHC-CCHHHHHHH
Confidence 3455555555555544422 244456667788888888888765 22211 2222 22455 667777777
Q ss_pred c-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH---------------HHHHHHHHHcCCHHHHHHHHhh-
Q 000992 983 I-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL---------------EKAMKAYRASGNWSGVLTVAGL- 1041 (1196)
Q Consensus 983 ~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~---------------~kAl~~y~~~g~w~~al~la~~- 1041 (1196)
+ ..| ....++..+|.-+...++|++|...|.++-.. .+|...|...|++.+|+.+..+
T Consensus 456 ~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 456 FRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6 222 23456667788888888888888888775432 1233344445677777765544
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+..+++.. .....+|..+...|++.+|...|.+
T Consensus 535 l~l~p~~~-~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 535 LIIDPECD-IAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HhcCCCcH-HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 22233222 2345566666666666666666555
No 320
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.15 E-value=0.029 Score=67.25 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=71.4
Q ss_pred hHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC---------------------CCHHHHHHHHHHcCCHHH
Q 000992 976 FPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGNWSG 1034 (1196)
Q Consensus 976 y~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a---------------------g~~~kAl~~y~~~g~w~~ 1034 (1196)
|++|++| ||. +.+.+-.+|.-|.+.+.|++|...|++| |..+-|+++|.++
T Consensus 241 y~eAvkl--dP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra----- 312 (966)
T KOG4626|consen 241 YEEAVKL--DPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA----- 312 (966)
T ss_pred HHHhhcC--CCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHH-----
Confidence 6666665 443 4455667788888888889998888887 5567777777543
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH---hcCCHHHH----HHHHHHhcCHHHHHHH
Q 000992 1035 VLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD---YCGDVTNG----ISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1035 al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~---yl~d~~~A----i~~y~~~~~w~eA~rl 1099 (1196)
+++--+ . .+-+..||..|++.|+..||..+|.+ |+-....| -..|-+.+.+++|.|+
T Consensus 313 -l~~~P~---F----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 313 -LELQPN---F----PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred -HhcCCC---c----hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 332222 1 24566789999999999999999866 22233332 2345566667777665
No 321
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.12 E-value=0.16 Score=66.44 Aligned_cols=182 Identities=12% Similarity=0.015 Sum_probs=92.3
Q ss_pred CCcchhhHHHHHHhcCCh-----hhhcccHHHHhhCHHHHHHHHHHc---CCCcHHH---HHHHHHHHhcChHHHHhhc-
Q 000992 916 RDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDSYHAD---CLNLMKKYAQLFPLGLKLI- 983 (1196)
Q Consensus 916 ~DpkeYlpfL~~L~~l~~-----~~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~~---ale~~~~~~~ly~~AL~L~- 983 (1196)
.++.+-+..++++....+ ......+....|++++|+++|.++ .+..... ...+..+. +.+++|++++
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 444444555555544311 233345666678888888888764 2221111 11233445 6677777666
Q ss_pred ----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC--------CHHHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHH
Q 000992 984 ----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLLK-LGKDEVA 1050 (1196)
Q Consensus 984 ----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag--------~~~kAl~~y~~~g~w~~al~la~~l~-~~~~~~~ 1050 (1196)
.+|. ....+..+|..+...+++++|...|.++- .+.....+|...|++++|+.+....- ..+.. .
T Consensus 524 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 601 (899)
T TIGR02917 524 KVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS-P 601 (899)
T ss_pred HHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-H
Confidence 2332 23455566677777777777777766541 11223345555566666665544321 01111 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
+....++..+...|++.+|...|.+.+. + ......+|.+.++|++|+...
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555566666666666666554321 1 123334455555555555443
No 322
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.12 E-value=0.032 Score=72.87 Aligned_cols=156 Identities=12% Similarity=-0.045 Sum_probs=71.2
Q ss_pred HHhhCHHHHHHHHHHcC---CCc---HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 942 LRLQRFENALKHIVSMG---DSY---HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g---~~~---~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
...|++++|+..+.++- +.. +......+... +.|++|++.| .+|. ....+..+|..+...+++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-GDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 34566666666655431 110 11112233444 5566666555 1222 2234445666666666666666
Q ss_pred HHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----
Q 000992 1011 TTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG---- 1078 (1196)
Q Consensus 1011 ~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~---- 1078 (1196)
.+|.++-. +-....++...|++++|+.+...+.............++..+...|++.+|...|.+.+.
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 66655421 122234455555566665555443100001122334455555556666666655554221
Q ss_pred --CHHHHHHHHHHhcCHHHHHHH
Q 000992 1079 --DVTNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1079 --d~~~Ai~~y~~~~~w~eA~rl 1099 (1196)
..-....+|.+.++|++|...
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHH
Confidence 112233444455555555443
No 323
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.11 E-value=0.092 Score=70.03 Aligned_cols=156 Identities=10% Similarity=0.004 Sum_probs=113.4
Q ss_pred hhCHHHHHHHHHHcC-------CC--cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 944 LQRFENALKHIVSMG-------DS--YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g-------~~--~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
.|++++|.+.|.++. ++ -+...+..+.+. +.+++|+++| .+-......+.....-+...+++++|
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~-G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 478899999887762 11 135567788898 9999999998 22111223444445566678999999
Q ss_pred HHHHHhCCC---------HHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1010 ATTYFCCSS---------LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1010 a~~y~~ag~---------~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
..+|..... |.-.+++|.++|++++|+.+-..+ +..++ ...+..+...+.+.|++++|.++|.+..
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999876542 456678899999999988766543 22222 2467888999999999999999998742
Q ss_pred -----CC---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1078 -----GD---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1078 -----~d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
-| +...|..||+.+++++|+.+...
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12 46789999999999999988663
No 324
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.11 E-value=0.019 Score=62.45 Aligned_cols=129 Identities=12% Similarity=-0.067 Sum_probs=83.8
Q ss_pred CCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEEeccCCCCcEE
Q 000992 200 LHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVE 276 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~ 276 (1196)
.|+++|+.+. +|.....--... -.+.+++.||||++.++.++- ..|-+|+.. |..+-...+ .+.++.-.
T Consensus 136 ndht~k~~~~-~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds------~~Vf~y~id~~sey~~~~~~-a~t~D~gF 207 (344)
T KOG4532|consen 136 NDHTGKTMVV-SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDS------RRVFRYAIDDESEYIENIYE-APTSDHGF 207 (344)
T ss_pred CCcceeEEEE-ecCcccceeeccccceeeeEEcCCCceEEEecCC------CcceEEEeCCccceeeeeEe-cccCCCce
Confidence 4689999988 544332211111 126899999999999999873 467777643 332221111 23345567
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE---EecCCc-EEEEEccCCCceEEEEec
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR---YLRRDG-IRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~---~~~~~~-~~v~Wsp~~~~~L~~~~~ 340 (1196)
..+||......|++..|+ ++-|||+.+..- +-.+.. -++++. ..+.|+|-|+..|...+.
T Consensus 208 ~~S~s~~~~~FAv~~Qdg---~~~I~DVR~~~t-pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDG---TCAIYDVRNMAT-PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred eeeeccCcceEEEEecCC---cEEEEEeccccc-chhhhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence 899999999999999999 999999986431 111111 122233 778999988776666653
No 325
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.08 E-value=0.042 Score=71.56 Aligned_cols=106 Identities=15% Similarity=-0.040 Sum_probs=58.2
Q ss_pred HHHHHhcccCHHHHHHHHHhCC--C-------HHHHHH---HHHHcCCHHHHHHHHhhcC-CCH-------------H-H
Q 000992 996 WADHLSDVKCFEDAATTYFCCS--S-------LEKAMK---AYRASGNWSGVLTVAGLLK-LGK-------------D-E 1048 (1196)
Q Consensus 996 ~A~~L~~~~~~~eAa~~y~~ag--~-------~~kAl~---~y~~~g~w~~al~la~~l~-~~~-------------~-~ 1048 (1196)
+|+.+...+++++|..+|.++- + .+.... +|.+.|++++|+....++. ..+ + .
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 4667777777777777777652 1 111222 4456677777776544321 001 1 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1049 VAKLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1049 ~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.......+|..+...|++.+|..++.+-+. + .-.-..+|...+++++|+.+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 123445667777777888887777766321 1 1222345556666777766544
No 326
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.05 E-value=0.035 Score=61.27 Aligned_cols=207 Identities=15% Similarity=0.039 Sum_probs=125.0
Q ss_pred CCCcEEEEECCCCeE---EEee-eecCcEEEEEEC---CCCC-EEEEEeCCceEEEEeccCceeeeeecccccCcccccc
Q 000992 95 SSGLLLLHSVDGNAT---EVVG-RVEGGVRFISPS---PDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~~---e~vg-~~~~~I~~~awS---PDg~-~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
..|.+.+++....+. ..+. .-..++..+.|+ -||. .|+-+-..|+|.+.-.+.+. ....+.+.. ++.++.
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~~ls-~~ki~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLRGLS-SKKISV 121 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeecccc-hhhhhh
Confidence 456666666643211 1111 113456667775 3455 56667778888877544332 222222222 222210
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE--EeccCCCceeEEEEcCCC-CeEEEEecC
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--SSELKAFMGAVLEWMPSG-ANIAAVYDR 243 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~--~~e~~~~~v~slawsPdG-~~IAs~s~d 243 (1196)
....++.|++-|.-++ ++- .++.+-+-+-..+.+.+ +.++|+...+..+|+-.. +++-+|++|
T Consensus 122 -------~~~lslD~~~~~~~i~-vs~------s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 122 -------VEALSLDISTSGTKIF-VSD------SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred -------eeeeEEEeeccCceEE-EEc------CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCC
Confidence 0236889999998887 553 34566644443676766 778888888888876543 677888876
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec-
Q 000992 244 KSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR- 319 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~- 319 (1196)
. .+..|+.. .-++|..+ .-++..|.+|.=|| ++.++|+|+.|. .|++||+.|.. +.+.-..
T Consensus 188 ~------~l~~~D~R--~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe---~i~~~DtRnm~----kPl~~~~v 252 (339)
T KOG0280|consen 188 G------SLSCWDIR--IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE---CIRVLDTRNMG----KPLFKAKV 252 (339)
T ss_pred c------eEEEEEec--CCcceeeecceeeecceEEEecCCCCCceEEEecccc---ceeeeehhccc----CccccCcc
Confidence 4 68899843 12234333 12345688888775 688999999998 99999999853 3332111
Q ss_pred CC-cEEEEEccCCC
Q 000992 320 RD-GIRFMWHPTKP 332 (1196)
Q Consensus 320 ~~-~~~v~Wsp~~~ 332 (1196)
.+ ++.+.|||...
T Consensus 253 ~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 253 GGGVWRIKHHPEIF 266 (339)
T ss_pred ccceEEEEecchhh
Confidence 12 38889999775
No 327
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.03 E-value=0.035 Score=75.65 Aligned_cols=183 Identities=13% Similarity=0.082 Sum_probs=109.1
Q ss_pred cCCcchhhHHHHHHhcCCh-----hhhcccHHHHhhCHHHHHHHHHHcCCCcHH----------------HHHHHHHHHh
Q 000992 915 QRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSMGDSYHA----------------DCLNLMKKYA 973 (1196)
Q Consensus 915 q~DpkeYlpfL~~L~~l~~-----~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~----------------~ale~~~~~~ 973 (1196)
++++.+=+..++++-++.+ .+.........+++++|+.+|.++-..... +..+.+...
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~- 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS- 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC-
Confidence 3455444555555544421 122223334467778888777765321100 011223555
Q ss_pred cChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-
Q 000992 974 QLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK- 1043 (1196)
Q Consensus 974 ~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l~- 1043 (1196)
+.+++|++++ ..|... .+...+|+.+..++++++|...|.++-.. -....+|...|++++|+.....+.
T Consensus 587 G~~~eA~~~l~~~p~~~-~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 587 GKEAEAEALLRQQPPST-RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCHHHHHHHHHhCCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6788888887 444322 35567888888899999998888866321 233467778888888887665532
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC----H---------HHHHHHHHHhcCHHHHHHHH
Q 000992 1044 LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD----V---------TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1044 ~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d----~---------~~Ai~~y~~~~~w~eA~rla 1100 (1196)
..++. ......+|..+...|++.+|.++|.+-+.. . ..+..+|.+.+++++|+..-
T Consensus 666 ~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 666 TANDS-LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred cCCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11222 234556778888889999999888774321 1 12345677888888887763
No 328
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.02 E-value=0.0036 Score=71.34 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHH----
Q 000992 946 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE---- 1020 (1196)
Q Consensus 946 ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~---- 1020 (1196)
+|++|...|.++|. .++.. +.|++|.+.| .- ..+....++....-+.|.+|+.+|.+. +++
T Consensus 30 ~~e~Aa~~y~~Aa~--------~fk~~-~~~~~A~~ay~kA----a~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~ 95 (282)
T PF14938_consen 30 DYEEAADLYEKAAN--------CFKLA-KDWEKAAEAYEKA----ADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE 95 (282)
T ss_dssp HHHHHHHHHHHHHH--------HHHHT-T-CHHHHHHHHHH----HHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred CHHHHHHHHHHHHH--------HHHHH-hccchhHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence 57777777666542 33444 5555555444 10 111111222222333344555555444 443
Q ss_pred ---HHHHHHHHcCCHHHHHHHHhh----cC-C--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000992 1021 ---KAMKAYRASGNWSGVLTVAGL----LK-L--GKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1196)
Q Consensus 1021 ---kAl~~y~~~g~w~~al~la~~----l~-~--~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~ 1090 (1196)
+|++.|...|+++.+-.+..+ +. . +.++-.+.+.+-++.+...+....|..++. .+..++++.
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~-------~~A~l~~~l 168 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL-------KAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH-------HHHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH-------HHHHHHHHh
Confidence 344555555555554332221 11 0 222333444444444444444444444433 466788888
Q ss_pred cCHHHHHHHHHh
Q 000992 1091 RDWEEALRVAFM 1102 (1196)
Q Consensus 1091 ~~w~eA~rla~~ 1102 (1196)
++|++|+.+-.+
T Consensus 169 ~~y~~A~~~~e~ 180 (282)
T PF14938_consen 169 GRYEEAIEIYEE 180 (282)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 899998876544
No 329
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.99 E-value=0.065 Score=68.08 Aligned_cols=188 Identities=16% Similarity=0.068 Sum_probs=116.7
Q ss_pred HHhcCCcchhhHHHHHHhcCChh-----hhcccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHH
Q 000992 912 LNSQRDPKEFLPYLQELESMPPL-----LMRYTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGL 980 (1196)
Q Consensus 912 q~sq~DpkeYlpfL~~L~~l~~~-----~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL 980 (1196)
...++|+.+=+..+++.-.+.+. ...+.+...+|+|++|+..|.++ .++..+ ..-.+.... +.|++|+
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~ 419 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK-GEFAQAG 419 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 33467777778888877776443 45567778899999999998765 222221 111233556 7888888
Q ss_pred hhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhh-cCCCH
Q 000992 981 KLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGL-LKLGK 1046 (1196)
Q Consensus 981 ~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~-l~~~~ 1046 (1196)
+.| .+|... ..+..+|.-+...+++++|...|.++-.. ...-.+|...|+|++|+....+ +.+.+
T Consensus 420 ~~~~kal~l~P~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 420 KDYQKSIDLDPDFI-FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHHcCccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 887 355433 34567889999999999999999987321 1234667778888888754433 11121
Q ss_pred H------HHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-C------HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1047 D------EVAKLAQELCEELQALGKPGEAAKIALDYCG-D------VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1047 ~------~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~-d------~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
+ .+..+.......+...|++.+|.++|.+-+. + ......+|.+.+++++|+....
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1 1111222222333446889999888876321 1 1234566677778888876543
No 330
>PLN03077 Protein ECB2; Provisional
Probab=96.99 E-value=0.056 Score=71.48 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=108.3
Q ss_pred ccHHHH--hhCHHHHHHHHHHcCCC--cHHHHHHHHHHHhcChHHHHhhc---------CCcHHHHHHHHHHHHHHhccc
Q 000992 938 YTIDLR--LQRFENALKHIVSMGDS--YHADCLNLMKKYAQLFPLGLKLI---------TDPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 938 ~~Id~~--L~ry~~Al~~l~~~g~~--~~~~ale~~~~~~~ly~~AL~L~---------~d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
..|++| .|+.++|.+.|.++..+ -+...+..+.+| +.+++|++++ .|...+..++. -+...+
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~----a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH-GKGSMAVELFNRMVESGVNPDEVTFISLLC----ACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCcccHHHHHH----HHhhcC
Confidence 355665 46899999998887322 246667888899 9999999998 13334444443 355678
Q ss_pred CHHHHHHHHHhCC----------CHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1005 CFEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag----------~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
.+++|..+|.... -|.--+++|.++|++++|..+..+++..++. .+...|...+...++.+.|..+..
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~--~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP--AVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHH
Confidence 8999999988764 2455678999999999999999887655443 244555555655666665544433
Q ss_pred Hh-------cCCHHHHHHHHHHhcCHHHHHHHHH
Q 000992 1075 DY-------CGDVTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1075 ~y-------l~d~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
+- .+-+-.-..+|.+.++|++|.++-.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 31 1334556678999999999988754
No 331
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.96 E-value=0.087 Score=67.40 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=101.3
Q ss_pred HHHhhCHHHHHHHHHHcCC----CcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHH
Q 000992 941 DLRLQRFENALKHIVSMGD----SYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFED 1008 (1196)
Q Consensus 941 d~~L~ry~~Al~~l~~~g~----~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~e 1008 (1196)
....|++++|+..+.++-. +.. -.....+.+. +.|++|++.+ .+|. ...+...+|.-+...+++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchh
Confidence 3456889999988776311 101 1122344566 7888888777 2333 35566778899999999986
Q ss_pred ----HHHHHHhCCCH----HHH----HHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1009 ----AATTYFCCSSL----EKA----MKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1009 ----Aa~~y~~ag~~----~kA----l~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
|..+|.++-.. ..+ ..+|...|+|++|+...++. ..+++. ......++..+...|++.+|...|.+
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777766322 122 25566778888888655432 112222 23455688888999999999999887
Q ss_pred hcC-CHHH------HHHHHHHhcCHHHHHHHHHh
Q 000992 1076 YCG-DVTN------GISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1076 yl~-d~~~------Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+. +++. +..+|.+.+++++|+....+
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 542 2221 23467888999999876543
No 332
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.95 E-value=0.036 Score=65.74 Aligned_cols=164 Identities=12% Similarity=-0.014 Sum_probs=112.0
Q ss_pred cccHHHHhhCHHHHHHHHHHcCCC--c--H------HHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhc
Q 000992 937 RYTIDLRLQRFENALKHIVSMGDS--Y--H------ADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~g~~--~--~------~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
...+....|+|++|+..+.++-.. . . ......+... +.|++|++++ .........+..+|.-+..
T Consensus 75 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 153 (389)
T PRK11788 75 LGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ 153 (389)
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 345666788999999987764211 0 0 1113344666 8899999988 2122345677788899999
Q ss_pred ccCHHHHHHHHHhCCCHH-------------HHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHH
Q 000992 1003 VKCFEDAATTYFCCSSLE-------------KAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGE 1068 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~~-------------kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~e 1068 (1196)
.++|++|...|.++-+.. .....|...|++.+|+....+. ...++. ......++..+...|++.+
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-VRASILLGDLALAQGDYAA 232 (389)
T ss_pred hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-HHHHHHHHHHHHHCCCHHH
Confidence 999999999998763211 1223556778999998766552 112222 2355678898999999999
Q ss_pred HHHHHHHhcC-CH-------HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1069 AAKIALDYCG-DV-------TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1069 Aa~i~~~yl~-d~-------~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
|.+++.+.+. ++ ...+.+|++.+++++|+....+
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988553 22 2345789999999999987654
No 333
>PLN03077 Protein ECB2; Provisional
Probab=96.92 E-value=0.23 Score=65.80 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=82.0
Q ss_pred hhCHHHHHHHHHHcC-----C--CcHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHH
Q 000992 944 LQRFENALKHIVSMG-----D--SYHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAAT 1011 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g-----~--~~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~ 1011 (1196)
.|++++|++.|.++. + .-+...+....+. +.+++|.+++ .+......++...-+-+...+++++|..
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 455667776666541 1 1134444555555 6666666665 1111222344444455555667777777
Q ss_pred HHHhCCC-----HHHHHHHHHHcCCHHHHHHHHhhcC--CCHHHH--H-------------------------------H
Q 000992 1012 TYFCCSS-----LEKAMKAYRASGNWSGVLTVAGLLK--LGKDEV--A-------------------------------K 1051 (1196)
Q Consensus 1012 ~y~~ag~-----~~kAl~~y~~~g~w~~al~la~~l~--~~~~~~--~-------------------------------~ 1051 (1196)
+|.+..+ |.--+..|.+.|++.+|+.+-.++. ..++.. . .
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 7666543 3444556666666666655443321 111111 0 0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCC---HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCGD---VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d---~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
+...+.+.+.+.|+.++|-++|.+.-.| +..-|..|++.+++++|+.+-.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223334555566666666666653111 3456777888888888877655
No 334
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.89 E-value=0.011 Score=71.44 Aligned_cols=275 Identities=13% Similarity=0.163 Sum_probs=147.6
Q ss_pred ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee-eecccccCccccccCccccCCC-CeEEEEEccCCceEEEee
Q 000992 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFDVHEPELSSSFS-FKSPISWRGDGKYFATLS 192 (1196)
Q Consensus 115 ~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~-~~l~~~~~~~~Vs~tqf~~~~~-~v~~isWspDG~~lAsvs 192 (1196)
+++++.+++.+|-|+-+|+|+.-|-+.+ +.+ ++.+- ..++..+ ...|..+||..|.. ..+-++||+.-.
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~-dld-~p~~ppr~l~h~t-pw~vad~qws~h~a~~~wiVsts~qka------ 93 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYII-DLD-DPFTPPRWLHHIT-PWQVADVQWSPHPAKPYWIVSTSNQKA------ 93 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEE-ecc-CCCCCceeeeccC-cchhcceecccCCCCceeEEecCcchh------
Confidence 4688999999999999999998876544 111 11110 0111110 11122344443332 234455555443
Q ss_pred ccccccCCCCEEEEEECC---CCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000992 193 EFCNSSKLHKRLKVWERD---SGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~---~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1196)
-||+.. +......+-+|...+..+-|.|+.. .+|+++.|. .|..|+...-+.--+...
T Consensus 94 ------------iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt------~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 94 ------------IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT------YVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred ------------hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccc------cceeeeccCCCcceeeee
Confidence 234321 1122223445777789999999875 678888764 478888543222111111
Q ss_pred cCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecC----CEEEEEEEEEEec----C-CcEEEEEccCCCceEEEE
Q 000992 269 EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSN----NHWYLKYEIRYLR----R-DGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 269 ~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n----~~wylkq~l~~~~----~-~~~~v~Wsp~~~~~L~~~ 338 (1196)
. -...-..|+||- |+.+||+.-... |.+|+... .+| +|..+.... . ......|++....++..|
T Consensus 156 ~-w~s~asqVkwnyk~p~vlasshg~~----i~vwd~r~gs~pl~s-~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 156 S-WRSAASQVKWNYKDPNVLASSHGND----IFVWDLRKGSTPLCS-LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred c-ccccCceeeecccCcchhhhccCCc----eEEEeccCCCcceEE-ecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 1 012355799994 788999876655 99999863 233 443322110 0 013456888887778887
Q ss_pred ecCCcEEEEEE-------EEeee--cCCCeeEEE--EcCCEEEEeec----cccC---CCCCceeeee-cCCCCEEEEEE
Q 000992 339 TLDGQITTYNF-------IWTTA--VMENSTALV--IDGSKILVTPL----SLSL---MPPPMYLFSL-KFPTAVTEMAF 399 (1196)
Q Consensus 339 ~~~g~~~~~~~-------~~~~~--~~d~~~v~v--iDg~~l~lt~l----~~~~---vpppm~~~~l-~~~~~V~~Vaf 399 (1196)
+.+......+. +|... |-+.|.+.. ..|+.+.+... ..|+ .|.|. +++ +|++.|...-|
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV--h~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV--HTFVGHDDVVLEFLW 307 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcce--eeecCcchHHHHHhh
Confidence 75443322111 12211 333333222 22332222211 1222 23443 444 58887776666
Q ss_pred ecCCC--------CCEEEEEECCCcEEEEeCCC
Q 000992 400 YSKSS--------KNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 400 spdg~--------~~~lAs~~~dg~v~lw~~~~ 424 (1196)
-..++ +-.|++=+.|.++++|-.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 55443 14699999999999999865
No 335
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.87 E-value=1.5 Score=52.07 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e 110 (1196)
.++.||+++.++.++.+|. .+++..|+.. ++..+. ..+ ..++..+.+++.+|.+.-+|..+|++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~--~tG~~~W~~~-~~~~~~-------~~p-----~v~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDA--ETGKRLWRVD-LDERLS-------GGV-----GADGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEc--cCCcEeeeec-CCCCcc-------cce-----EEcCCEEEEEcCCCEEEEEECCCCcEe
Confidence 4788999999888999998 6777667643 221111 111 235677888889999999999877653
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
-.-...+.+.+.--- ++..+..++.++.|..++
T Consensus 129 W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 129 WRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALD 161 (377)
T ss_pred eeeccCceeecCCEE-ECCEEEEECCCCeEEEEE
Confidence 111112222211111 345666677888887776
No 336
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.87 E-value=0.034 Score=61.35 Aligned_cols=185 Identities=11% Similarity=0.018 Sum_probs=113.0
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC-CCEEEEEECCCcEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLLL 101 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd-~~~La~as~dG~I~l 101 (1196)
...+-|++-+..+|+.-+++++-.++.+ .... .++.+ .+.|.+ ..+-.+|+-. -+.+-+|+.||.+.-
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~l-e~vq~----wk~He~----E~Wta~f~~~~pnlvytGgDD~~l~~ 192 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYET--EMVL-EKVQT----WKVHEF----EAWTAKFSDKEPNLVYTGGDDGSLSC 192 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecc--eeee-eeccc----ccccce----eeeeeecccCCCceEEecCCCceEEE
Confidence 3445567778888877666666555442 1111 01111 344444 4555566543 367789999999999
Q ss_pred EECCC-Ce-E-EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEe-c-cCceeeeeecccccCccccccCccccCCCC
Q 000992 102 HSVDG-NA-T-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMT-H-DWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 102 w~~~~-~~-~-e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~-~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
||... +. + .....|..||.++.=|| ++..||+|+-|.+|.+|+ | -.+|+....+ .++
T Consensus 193 ~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-----------------~GG 255 (339)
T KOG0280|consen 193 WDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-----------------GGG 255 (339)
T ss_pred EEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-----------------ccc
Confidence 99872 22 2 22445788999998886 588999999999998885 2 2333332221 268
Q ss_pred eEEEEEccCCc--eEEEeeccccccCCCCEEEEEECC--CCc---EEEEeccCCCceeEEEEcCCCCeEEEEecC
Q 000992 176 KSPISWRGDGK--YFATLSEFCNSSKLHKRLKVWERD--SGT---LQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 176 v~~isWspDG~--~lAsvss~d~~~~~d~~irVWd~~--~G~---l~~~~e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
|++|.|+|--. .|| +.-++ -++|-+.+ -++ ...+...|+++...-.|..--..||+++.-
T Consensus 256 VWRi~~~p~~~~~lL~-~CMh~-------G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 256 VWRIKHHPEIFHRLLA-ACMHN-------GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred eEEEEecchhhhHHHH-HHHhc-------CceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 99999999654 333 22221 23333332 233 333445677777777885555689998763
No 337
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.013 Score=68.72 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=90.4
Q ss_pred cChHHHHHHHHhccC------hhHHHHHHHHhcCCcchhhHHHHHHhcCCh-----hhhcccHHHHhhCHHHHHHHHHHc
Q 000992 889 ADSEAVYEAALGLYD------LNLAAIVALNSQRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 889 ~d~~~Ly~~ALg~yD------~~lal~vAq~sq~DpkeYlpfL~~L~~l~~-----~~~r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
.++...++.|..+-- +.++++-|++ -||-+|..+++.-.++++ .+.|+.|.-.|++|++|+.-|-++
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~--~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADE--NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhh--hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 366677887776543 2345555554 578889999999999843 489999999999999999999887
Q ss_pred CCCc-------HHHHHHHHHHHhcChHHHHhhc-CCc---HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHH
Q 000992 958 GDSY-------HADCLNLMKKYAQLFPLGLKLI-TDP---AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEK 1021 (1196)
Q Consensus 958 g~~~-------~~~ale~~~~~~~ly~~AL~L~-~d~---~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~k 1021 (1196)
-.=. .+.|.-.++.| -+..+...| .-. ....+++..+|+-|.++++|.+|.++|..|-..+.
T Consensus 421 i~L~pe~~~~~iQl~~a~Yr~~--k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 421 ISLDPENAYAYIQLCCALYRQH--KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hhcChhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 4222 24444444443 244455544 111 12346788999999999999999999999866544
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.83 E-value=0.45 Score=53.07 Aligned_cols=207 Identities=10% Similarity=0.079 Sum_probs=102.4
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-CCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
+.+..|+|.||+..|++|.. ..+.|-..+. +|+++....-. .+-...|++--+|.++.+..+ .+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d------~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er------~~~L 88 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQD------EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER------DQRL 88 (248)
T ss_dssp S-EEEEEEETTTTEEEEEET------TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT------TTEE
T ss_pred CCccccEEcCCCCeEEEEEC------CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC------CCcE
Confidence 34789999998665553653 4578888898 89988765321 244589999888877665533 3567
Q ss_pred EEEeC--CC--eeE---EEEEeccC--CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC---CEEEEEEE---EE-
Q 000992 253 VFYER--NG--LER---SSFDINEQ--IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN---NHWYLKYE---IR- 316 (1196)
Q Consensus 253 ~~~e~--nG--l~~---~~f~l~~~--~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n---~~wylkq~---l~- 316 (1196)
.+++. ++ ... ..+.+..+ +...+..|+|+|.++.|.++-... -.+|+.+.. ........ +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceeecccccccc
Confidence 77664 11 111 22333322 234589999999988888887666 466777653 11111000 00
Q ss_pred --EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCE
Q 000992 317 --YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 317 --~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V 394 (1196)
....+...+.+||..+. |.+.+...... ... -.+|+.+...++....-..+ ..+ ...
T Consensus 166 ~~~~~~d~S~l~~~p~t~~-lliLS~es~~l---~~~-----------d~~G~~~~~~~L~~g~~gl~---~~~---~Qp 224 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGH-LLILSDESRLL---LEL-----------DRQGRVVSSLSLDRGFHGLS---KDI---PQP 224 (248)
T ss_dssp HT--SS---EEEEETTTTE-EEEEETTTTEE---EEE------------TT--EEEEEE-STTGGG-S---S------SE
T ss_pred ccceeccccceEEcCCCCe-EEEEECCCCeE---EEE-----------CCCCCEEEEEEeCCcccCcc---ccc---CCc
Confidence 00112366888998876 45555433221 011 12466566666654211000 000 123
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEE
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVV 420 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw 420 (1196)
-.|||.++| + |-+.+.-+.+..|
T Consensus 225 EGIa~d~~G--~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDG--N-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT-----EEEEETTTEEEEE
T ss_pred cEEEECCCC--C-EEEEcCCceEEEe
Confidence 578999998 4 4444455544443
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.004 Score=74.57 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=60.8
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFC 195 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d 195 (1196)
..+|.-+.|+|-=.++|+++.+|.|.+---.|.-+-.++.+..+ -..+++|+|||+.+| ++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~---------------v~~sL~W~~DGklla-Vg~-- 81 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN---------------VTASLCWRPDGKLLA-VGF-- 81 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc---------------cceeeeecCCCCEEE-EEe--
Confidence 45789999999999999999999888754445555555544332 125999999999999 887
Q ss_pred cccCCCCEEEEEECCCCcEEE
Q 000992 196 NSSKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 196 ~~~~~d~~irVWd~~~G~l~~ 216 (1196)
.|++|++-|.+.|..+.
T Consensus 82 ----kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 82 ----KDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ----cCCeEEEEEccCCCcee
Confidence 46999999997775543
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.31 Score=58.17 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=126.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC---CC
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---SG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~---dG 97 (1196)
.....+.++++..+|.... ++.|...|. .+... +. . ...+..+..+++.|+++.+.++.. ++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~--~~~~~---~~-------~--~~vG~~P~~~~~~~~~~~vYV~n~~~~~~ 140 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDT--ATNTV---LG-------S--IPVGLGPVGLAVDPDGKYVYVANAGNGNN 140 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcC--cccce---ee-------E--eeeccCCceEEECCCCCEEEEEecccCCc
Confidence 4567788999999998865 355777775 22221 11 1 111346789999999999888876 68
Q ss_pred cEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 98 LLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 98 ~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
+|.+.|..++++- -+|. .+ ..++++|||+.+..+. .+++|.+.+-....+.+ . .. ...+ +..
T Consensus 141 ~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~--~~--~~~~------~~~ 206 (381)
T COG3391 141 TVSVIDAATNKVTATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G--SV--GSLV------GVG 206 (381)
T ss_pred eEEEEeCCCCeEEEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c--cc--cccc------ccC
Confidence 8888898886543 2332 33 8899999999766665 67788775532222221 0 00 0001 111
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
..-..+.|+|||+++- +.-.. ..++++.+.|..++.....-.+... ....++..|+|+.+-+.... ...|
T Consensus 207 ~~P~~i~v~~~g~~~y-V~~~~---~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-----~~~V 277 (381)
T COG3391 207 TGPAGIAVDPDGNRVY-VANDG---SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-----GGTV 277 (381)
T ss_pred CCCceEEECCCCCEEE-EEecc---CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-----CCeE
Confidence 2336899999999665 33211 1236888889878877765333333 45789999999998887553 2456
Q ss_pred EEEeCC
Q 000992 253 VFYERN 258 (1196)
Q Consensus 253 ~~~e~n 258 (1196)
.+.+..
T Consensus 278 ~vid~~ 283 (381)
T COG3391 278 SVIDGA 283 (381)
T ss_pred EEEeCC
Confidence 666643
No 341
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.78 E-value=0.059 Score=65.74 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=51.3
Q ss_pred ChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHH
Q 000992 975 LFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049 (1196)
Q Consensus 975 ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~ 1049 (1196)
.+++|++|+ ..+.+....+...|.-+..+++|++|..+|. +|++.|. . .++.+.-.+
T Consensus 305 ~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q------~al~i~~------~------~~g~~~~~~ 366 (508)
T KOG1840|consen 305 YCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ------KALKIYL------D------APGEDNVNL 366 (508)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH------HHHHHHH------h------hccccchHH
Confidence 355666665 4666777777777788888888888877776 3444432 0 111111134
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+...||.-+..+|+|.||.++|.+
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 45666677777777777777766655
No 342
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.0001 Score=85.21 Aligned_cols=156 Identities=13% Similarity=0.056 Sum_probs=129.2
Q ss_pred hhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 933 PLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 933 ~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
.++--..++--+.+|++|.+++.+... .-+|++|..+. .|+.|+-+. .+|.++..+-.+|++.|+..+.+..+.
T Consensus 47 ~nlavaca~tiv~~YD~agq~~le~n~--tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl 122 (615)
T KOG2247|consen 47 HNLAVACANTIVIYYDKAGQVILELNP--TGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL 122 (615)
T ss_pred CceehhhhhhHHHhhhhhcceecccCC--chhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH
Confidence 356667888889999999999999965 69999999884 899999998 899999999999999999999999999
Q ss_pred HHHHhCCCH------HH--------HHHHHHHcC-CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1011 TTYFCCSSL------EK--------AMKAYRASG-NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1011 ~~y~~ag~~------~k--------Al~~y~~~g-~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..|++.+.. +. -.+.....| +.|+..++|..+. + ..+...++..|...+++.||+.+|..
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE-d----~vil~dcd~~L~v~~qegeta~ltev 197 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE-D----YVILCDCDNTLSVTTQEGETASLTEV 197 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc-c----eeeecCcHHHHHHhhhccceeeeeec
Confidence 999997532 11 113334444 6777777776542 2 34677899999999999999999999
Q ss_pred hcCCHHHHHHHHHHhcCHHHHHH
Q 000992 1076 YCGDVTNGISLLIDARDWEEALR 1098 (1196)
Q Consensus 1076 yl~d~~~Ai~~y~~~~~w~eA~r 1098 (1196)
.|.++.|--.|.+.+.|..|=.
T Consensus 198 -ggepdnm~~~y~k~n~w~kage 219 (615)
T KOG2247|consen 198 -GGEPDNMDFFYGKVNGWGKAGE 219 (615)
T ss_pred -cCccchhhhheeeeeccccccc
Confidence 9999999999999999998854
No 343
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.76 E-value=0.045 Score=67.96 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhc-ChHHHHhhc-----CCcHHHHHHHHHHHHHHhc---ccCHHHHHHHHHhCCCHHHHHHHHHH----
Q 000992 962 HADCLNLMKKYAQ-LFPLGLKLI-----TDPAKMEQVLEAWADHLSD---VKCFEDAATTYFCCSSLEKAMKAYRA---- 1028 (1196)
Q Consensus 962 ~~~ale~~~~~~~-ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~---~~~~~eAa~~y~~ag~~~kAl~~y~~---- 1028 (1196)
.+..++++..+-+ .|+.+-++- .+.+.++.+++..|..-.. .++..+++++|..+|+-.-....|+.
T Consensus 353 qe~Ll~~~~~~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~ 432 (631)
T PF12234_consen 353 QEELLSLVPPQIKLSWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWH 432 (631)
T ss_pred HHHHHHHhhhhccCCHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcc
Confidence 5888888877623 699988764 6779999999999986555 47888999999999997766666763
Q ss_pred cCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHH-HhcCHHHHHHHHHhcCCc-
Q 000992 1029 SGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLI-DARDWEEALRVAFMHRRE- 1106 (1196)
Q Consensus 1029 ~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~-~~~~w~eA~rla~~~~~~- 1106 (1196)
.++=+.+--++. +.++++.+.-|.+=|=.|..++||..||..|+- +|+++.||+.++ +.+...=|+.+|..+...
T Consensus 433 ~~~~k~~~Fl~n--dF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLL-ag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~ 509 (631)
T PF12234_consen 433 KEQQKMAKFLSN--DFTEPRWRTAALKNAYALLSKHRYEYAAAFFLL-AGSLKDAVNVCLRQLNDPQLAIAIARLYEGDN 509 (631)
T ss_pred cccHHHHHHHhh--cCCChHHHHHHHHhHHHHHhcccHHHHHHHHHh-cccHHHHHHHHHHHccChhHHHHHHHHHcCCC
Confidence 333333334444 346778888899999999999999999999999 999999999999 569999999999887643
Q ss_pred -----hhHHH-HHHHH
Q 000992 1107 -----DLITK-VKHAS 1116 (1196)
Q Consensus 1107 -----dL~e~-v~~~l 1116 (1196)
++++. |.|..
T Consensus 510 gp~~~~ll~~~vLp~a 525 (631)
T PF12234_consen 510 GPVLKKLLEEHVLPEA 525 (631)
T ss_pred chHHHHHHHHhhhccc
Confidence 35555 55543
No 344
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.74 E-value=0.0047 Score=81.02 Aligned_cols=187 Identities=10% Similarity=0.105 Sum_probs=128.8
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-E---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-T---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
..|..|.=+|-...-.+|+.||.|++|.-..+. + ...|. ..|..+.|+.+|.-..++.+||.+-+|...-.+..
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT 2286 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCCccee
Confidence 356777778888888999999999998765432 2 24443 77999999999999999999999999875533332
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slaw 230 (1196)
... -|+.....+.|=+ ..+| .++.. ..++.+.+||.. .+..-.....|++..+.+++
T Consensus 2287 s~q----------------chnk~~~Df~Fi~--s~~~-tag~s---~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2287 SWQ----------------CHNKALSDFRFIG--SLLA-TAGRS---SDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAY 2344 (2439)
T ss_pred ccc----------------cCCccccceeeee--hhhh-ccccC---CCCCcccchhcccCcccceeeeecCCCceEEEE
Confidence 222 2333334455544 4456 34433 357899999973 23333333568889999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
-|.-++|.||+++ +.|.+||.-- . .|+ +.-. . |. .-.++.+++..+ .++||+++..
T Consensus 2345 ~P~~qllisggr~------G~v~l~D~rq---r--ql~--h~~~--~--~~-~~~~f~~~ss~g---~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2345 APKHQLLISGGRK------GEVCLFDIRQ---R--QLR--HTFQ--A--LD-TREYFVTGSSEG---NIKIWRLSEF 2400 (2439)
T ss_pred cCcceEEEecCCc------CcEEEeehHH---H--HHH--HHhh--h--hh-hhheeeccCccc---ceEEEEcccc
Confidence 9999999999996 4699999421 1 111 1111 1 44 456778888888 8999999864
No 345
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.69 E-value=0.34 Score=56.13 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=65.6
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1023 MKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1023 l~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+++|...++|++....|.. .-+| -=++-+++.+.+.|...+|....-+ +.+ ++-+++|++.++|.+|..+|.+
T Consensus 215 i~aLa~~~~w~eL~~fa~s-kKsP----IGyepFv~~~~~~~~~~eA~~yI~k-~~~-~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 215 IKALAENKDWDELEKFAKS-KKSP----IGYEPFVEACLKYGNKKEASKYIPK-IPD-EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhcCCHHHHHHHHhC-CCCC----CChHHHHHHHHHCCCHHHHHHHHHh-CCh-HHHHHHHHHCCCHHHHHHHHHH
Confidence 3777888889988888853 2122 1145577888889999998876666 889 9999999999999999999999
Q ss_pred cCCchhHHHH
Q 000992 1103 HRREDLITKV 1112 (1196)
Q Consensus 1103 ~~~~dL~e~v 1112 (1196)
.+..+.+..|
T Consensus 288 ~kd~~~L~~i 297 (319)
T PF04840_consen 288 EKDIDLLKQI 297 (319)
T ss_pred cCCHHHHHHH
Confidence 9887777663
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.41 Score=57.65 Aligned_cols=188 Identities=16% Similarity=0.096 Sum_probs=96.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-------EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-------~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d 148 (1196)
+.|+++.|+.+ +.|++...||.++++|..+.. ++..+-.+..|.+..+..+| +|..++++.+.+-+ +++
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~-n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVN-NID 156 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEe-Ccc
Confidence 78999999985 666677899999999997654 22222223334444444455 55566677765543 222
Q ss_pred -eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 149 -LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 149 -~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
+.....+.... -..+.++.+........++.++...+ .... ...+.+-+....+. .. ..+.+..
T Consensus 157 ~~~~~~~~~~~p----~~~~~~~~~~~~~~i~~l~~~~~~~i-~~~~------g~~i~~i~~~~~~~---i~-~~~~i~~ 221 (410)
T PF04841_consen 157 EPVKLRRLPEIP----GLWTKFHWWPSWTVIPLLSSDRVVEI-LLAN------GETIYIIDENSFKQ---ID-SDGPIIK 221 (410)
T ss_pred ccchhhccccCC----CcccccccccccccceEeecCcceEE-EEec------CCEEEEEEcccccc---cc-CCCCeEE
Confidence 21101111100 00011111111111145666666555 2221 24455333312111 11 2457899
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAV 290 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~ 290 (1196)
++.||+|+.||.-..++ .+.+...+= ...-++.+. .......+.|--+..+++..
T Consensus 222 iavSpng~~iAl~t~~g------~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 222 IAVSPNGKFIALFTDSG------NLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred EEECCCCCEEEEEECCC------CEEEEECcccceeEEeecC--cCCCCcEEEEECCCcEEEEe
Confidence 99999999999988743 354444321 112233332 22356688898776555554
No 347
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.62 E-value=0.32 Score=66.54 Aligned_cols=19 Identities=11% Similarity=0.266 Sum_probs=13.7
Q ss_pred HHHHhcccHHHHHHHHHhc
Q 000992 714 VNALIQGRFRDALVMVRRH 732 (1196)
Q Consensus 714 ~~~l~~~~y~~Af~~~R~h 732 (1196)
+-++..++|.+|+.+.++-
T Consensus 189 ~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHccCCHHHHHHHHHHH
Confidence 3346778888888887763
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=96.61 E-value=0.043 Score=69.28 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=83.9
Q ss_pred cChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh---cCCCHH
Q 000992 974 QLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL---LKLGKD 1047 (1196)
Q Consensus 974 ~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~---l~~~~~ 1047 (1196)
++.++=+.|. .+++..+.|.+.-|+.++.+|++++|..+|..||+|+++++...+.. .+++..... ..-..+
T Consensus 395 G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~L--s~~l~~~~~~~~~~s~~~ 472 (613)
T PF04097_consen 395 GLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLL--SQVLSQPSSSSLSDSERE 472 (613)
T ss_dssp -HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHH--HHHHHCSSTSSSSSTTTT
T ss_pred ceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHcCccccccccchhh
Confidence 4455555554 46788999999999999999999999999999999999999986553 223321111 001235
Q ss_pred HHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000992 1048 EVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1048 ~~~~l~~~la~~L~~~~~~-----~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~ 1104 (1196)
++..++..+.+.+...+.. ..+...+.. |-++-++.+.|-++ +|++|+....+-+
T Consensus 473 ~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~-Ll~L~~ff~~~~~g-~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 473 RLIELAKEILERYKSNPHISSKVSRKNRETFQL-LLDLAEFFDLYHAG-QYEQALDIIEKLD 532 (613)
T ss_dssp SHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHH-HHHHHHHHHHHHTT--HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCcchHhhccHHHHHHHHH-HHHHHHHHHHHHcC-CHHHHHHHHHhCC
Confidence 6678888888888665443 233333333 66666766666554 7999998876643
No 349
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.59 E-value=0.23 Score=55.78 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=88.0
Q ss_pred CEEEEEEccCCCEEEEEE--CCC-cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe--ccCceee
Q 000992 77 SITAFDYLMEKEALIVGT--SSG-LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLY 151 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as--~dG-~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~--~~~d~~~ 151 (1196)
.+.+.+.|+||+.+|... .++ .+..+...+....... ...+..-+|+|||...+...++....++. ..... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~-~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG-E 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc-e
Confidence 689999999999998877 333 3444554443223222 23789999999999998888777666542 11111 1
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEE--CC-CCcEEEE------eccCC
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE--RD-SGTLQAS------SELKA 222 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd--~~-~G~l~~~------~e~~~ 222 (1196)
...+... .....|..+.+||||..+|.+.. ++ +++.|.|=- ++ .|..... .....
T Consensus 102 ~~~v~~~------------~~~~~I~~l~vSpDG~RvA~v~~-~~---~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 102 PVEVDWP------------GLRGRITALRVSPDGTRVAVVVE-DG---GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred eEEeccc------------ccCCceEEEEECCCCcEEEEEEe-cC---CCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 1111100 01116789999999999994332 21 235555432 21 4411111 11223
Q ss_pred CceeEEEEcCCCCeEEEEecC
Q 000992 223 FMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d 243 (1196)
..+.+++|.+++.+++.++..
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred CcceeeeecCCCEEEEEeCCC
Confidence 456899999999988776553
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.54 E-value=0.95 Score=51.05 Aligned_cols=228 Identities=19% Similarity=0.195 Sum_probs=129.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
+.+..++.|+++++++ ++.++. .......++. ....|..+...|+-+.|.+-+ ||.+.+++++.
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~--~~~~~~~~i~------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDL--SDPSKPTRIL------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEe--cCCccceeEe------------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 3466789999999888 888887 2222211221 112499999999988877654 69999999864
Q ss_pred CeE-E---------------EeeeecCcEEEEE---ECCCCCEEEEEeCCceEEEEecc-----C-ceeeeeecccccCc
Q 000992 107 NAT-E---------------VVGRVEGGVRFIS---PSPDGDLLGVTTGFGQILVMTHD-----W-DLLYENPLEELAEG 161 (1196)
Q Consensus 107 ~~~-e---------------~vg~~~~~I~~~a---wSPDg~~LA~~s~d~tV~l~~~~-----~-d~~~~~~l~~~~~~ 161 (1196)
-.. . .+.. ..++...+ -...+..|+.+... +|.++... | ....|..+.
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp----- 138 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLP----- 138 (275)
T ss_pred hccccccccccccccccccccccc-cCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcC-----
Confidence 111 0 1111 23455444 33444556655554 77776422 2 333443332
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc-----------eeEEEE
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----------GAVLEW 230 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~-----------v~slaw 230 (1196)
+.+..++|. +..++ ++. .+.+.+.|..+|.........+.. ...+--
T Consensus 139 ------------~~~~~i~~~--~~~i~-v~~-------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 196 (275)
T PF00780_consen 139 ------------DPPSSIAFL--GNKIC-VGT-------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ 196 (275)
T ss_pred ------------CCcEEEEEe--CCEEE-EEe-------CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE
Confidence 345899999 44466 554 256888888777766554321111 122222
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
-+++.++.+... .-.|.+.+|...+...+.-. ....++++ ...+|.....+ .|.+|++.++.
T Consensus 197 ~~~~e~Ll~~~~--------~g~fv~~~G~~~r~~~i~W~--~~p~~~~~--~~pyli~~~~~----~iEV~~~~~~~-- 258 (275)
T PF00780_consen 197 LSDNEFLLCYDN--------IGVFVNKNGEPSRKSTIQWS--SAPQSVAY--SSPYLIAFSSN----SIEVRSLETGE-- 258 (275)
T ss_pred eCCceEEEEecc--------eEEEEcCCCCcCcccEEEcC--CchhEEEE--ECCEEEEECCC----EEEEEECcCCc--
Confidence 244666665432 24466777765442223211 12445555 33466665554 59999999985
Q ss_pred EEEEEEE
Q 000992 311 LKYEIRY 317 (1196)
Q Consensus 311 lkq~l~~ 317 (1196)
+.|.+..
T Consensus 259 lvQ~i~~ 265 (275)
T PF00780_consen 259 LVQTIPL 265 (275)
T ss_pred EEEEEEC
Confidence 5666654
No 351
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.53 E-value=0.86 Score=54.07 Aligned_cols=228 Identities=10% Similarity=0.043 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e 110 (1196)
+++.+|+++.++.++.+|. .+++..|+.. ++. .+.+.-.. .+..+.+++.+|.|..||..+++..
T Consensus 104 ~~~~v~v~~~~g~l~ald~--~tG~~~W~~~-~~~-----------~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDA--EDGKELWRAK-LSS-----------EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEEC--CCCcEeeeec-cCc-----------eeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence 4678888888888999998 6777666543 111 11111011 2456777788999999999876542
Q ss_pred -EeeeecCcEE------EEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEc
Q 000992 111 -VVGRVEGGVR------FISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWR 182 (1196)
Q Consensus 111 -~vg~~~~~I~------~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWs 182 (1196)
.... ..... +... .+ ..+.+++.++.+.-++ ++++.+-+...........+ ........+...
T Consensus 169 W~~~~-~~~~~~~~~~~sp~~-~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~-----~~~~~~~~~p~~- 239 (377)
T TIGR03300 169 WTYSR-VTPALTLRGSASPVI-AD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL-----ERLVDVDGDPVV- 239 (377)
T ss_pred eEEcc-CCCceeecCCCCCEE-EC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch-----hhhhccCCccEE-
Confidence 1111 11110 1111 12 3566666667776554 22222211111000000000 000000011111
Q ss_pred cCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCee
Q 000992 183 GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLE 261 (1196)
Q Consensus 183 pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~ 261 (1196)
.+|..++ ++ .++.+..||..+|+.....+. ... ... ..+|..|..++.+ ..|..++. +|..
T Consensus 240 ~~~~vy~--~~------~~g~l~a~d~~tG~~~W~~~~-~~~-~~p--~~~~~~vyv~~~~------G~l~~~d~~tG~~ 301 (377)
T TIGR03300 240 DGGQVYA--VS------YQGRVAALDLRSGRVLWKRDA-SSY-QGP--AVDDNRLYVTDAD------GVVVALDRRSGSE 301 (377)
T ss_pred ECCEEEE--EE------cCCEEEEEECCCCcEEEeecc-CCc-cCc--eEeCCEEEEECCC------CeEEEEECCCCcE
Confidence 1454444 32 257899999999998876652 111 111 2345566555543 35777775 4543
Q ss_pred EEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 262 RSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 262 ~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.-++ .+.. ....+.. ..+..|.+++.++ .|.+|+..++.
T Consensus 302 ~W~~~~~~~---~~~ssp~--i~g~~l~~~~~~G---~l~~~d~~tG~ 341 (377)
T TIGR03300 302 LWKNDELKY---RQLTAPA--VVGGYLVVGDFEG---YLHWLSREDGS 341 (377)
T ss_pred EEccccccC---CccccCE--EECCEEEEEeCCC---EEEEEECCCCC
Confidence 3222 1111 0111111 2466888888888 89999987653
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.51 E-value=1.1 Score=53.97 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=37.8
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
.|.+|+..|..+..+.--.+.|.++.|+.+ +.|+++..||++.+.+..++.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence 499999999877533322378999999987 666678899999887644443
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.42 E-value=0.14 Score=63.08 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=108.6
Q ss_pred EEEccCCCEEEEEE-CCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceeeeee
Q 000992 81 FDYLMEKEALIVGT-SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENP 154 (1196)
Q Consensus 81 v~~spd~~~La~as-~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~~~~ 154 (1196)
+-++|||+.+...+ ..+.+..+|.++.++. .+- +++.-..+++||||+++.+.+.+ +++..++.
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~-Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a--------- 267 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM-VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA--------- 267 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEE-eCCCcccceECCCCCEEEEeccCcccCcceeeecc---------
Confidence 44577887664433 2356677888875542 111 23445678999999999888632 23322221
Q ss_pred cccccCccccccCccccCCCCeEEE------EEccCCceEEEeeccccccCCCCEEEEEECCC----C-cEEEEeccCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPI------SWRGDGKYFATLSEFCNSSKLHKRLKVWERDS----G-TLQASSELKAF 223 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~i------sWspDG~~lAsvss~d~~~~~d~~irVWd~~~----G-~l~~~~e~~~~ 223 (1196)
... +.+..+ .+.+||++.- ++ +.+|.|.|..+ | +..... ++..
T Consensus 268 -~e~---------------d~~vvfni~~iea~vkdGK~~~-V~--------gn~V~VID~~t~~~~~~~v~~yI-PVGK 321 (635)
T PRK02888 268 -AER---------------DWVVVFNIARIEEAVKAGKFKT-IG--------GSKVPVVDGRKAANAGSALTRYV-PVPK 321 (635)
T ss_pred -ccC---------------ceEEEEchHHHHHhhhCCCEEE-EC--------CCEEEEEECCccccCCcceEEEE-ECCC
Confidence 111 112223 3456898766 54 26899999866 3 333322 3444
Q ss_pred ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-------------EEEEEeccCCCCcEEEEEEccCCCeeEEE
Q 000992 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-------------RSSFDINEQIDSTVELLKWNCMSDLLAAV 290 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~~~~~~~V~~laWSpDg~~LAs~ 290 (1196)
..+.+++||||+++.+++.. ..+|.+.+..-.. .++..+ ...-...+|.++|....+-
T Consensus 322 sPHGV~vSPDGkylyVankl-----S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytsl 392 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKL-----SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTL 392 (635)
T ss_pred CccceEECCCCCEEEEeCCC-----CCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeE
Confidence 55899999999999888764 3577777753221 121111 1123468899999988887
Q ss_pred EccCCcceEEEEEecC
Q 000992 291 VRFEEYDSVKICFFSN 306 (1196)
Q Consensus 291 ~~d~~~~~V~lW~~~n 306 (1196)
.-|. .|--|++..
T Consensus 393 f~ds---qv~kwn~~~ 405 (635)
T PRK02888 393 FLDS---QIVKWNIEA 405 (635)
T ss_pred eecc---eeEEEehHH
Confidence 7787 788899764
No 354
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.38 E-value=5.1 Score=51.44 Aligned_cols=346 Identities=17% Similarity=0.113 Sum_probs=170.9
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee--ecCcEEEEEECCCCC------EEEEEeCCceEEEEec
Q 000992 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR--VEGGVRFISPSPDGD------LLGVTTGFGQILVMTH 145 (1196)
Q Consensus 74 ~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~--~~~~I~~~awSPDg~------~LA~~s~d~tV~l~~~ 145 (1196)
+.+.++...-+.+.-++++|+.++.+.......+.+..+.+ .+..|.|+.+||-|+ .+|+|..+..+.+.+.
T Consensus 486 ~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 486 PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 33455555566677788899888887776665443332222 357799999998643 7888888777766553
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEE--EEECCCCcEEEEeccCCC
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK--VWERDSGTLQASSELKAF 223 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~ir--VWd~~~G~l~~~~e~~~~ 223 (1196)
.-|...-. +......-+ .-.+.--.+-+|+.||- |+. +++.+. +.|..+|++...-..+-|
T Consensus 566 ~pd~~~~~--~~~l~~~~i--------PRSIl~~~~e~d~~yLl-val------gdG~l~~fv~d~~tg~lsd~Kk~~lG 628 (1096)
T KOG1897|consen 566 LPDLILIT--HEQLSGEII--------PRSILLTTFEGDIHYLL-VAL------GDGALLYFVLDINTGQLSDRKKVTLG 628 (1096)
T ss_pred CCCcceee--eeccCCCcc--------chheeeEEeeccceEEE-EEc------CCceEEEEEEEcccceEccccccccC
Confidence 33322111 110000000 12345567778888988 775 456654 456657766543221112
Q ss_pred --ceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccC--CCeeEEEEccCCcce
Q 000992 224 --MGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM--SDLLAAVVRFEEYDS 298 (1196)
Q Consensus 224 --~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~~~ 298 (1196)
++.--.|+-.++ .+-+.++. +.+ +|--||..+-. .+..+.-..+ ..||.| ..-||++..+.
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdr------P~v-iY~~n~kLv~s-pls~kev~~~--c~f~s~a~~d~l~~~~~~~---- 694 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDR------PTV-IYSSNGKLVYS-PLSLKEVNHM--CPFNSDAYPDSLASANGGA---- 694 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCC------CEE-EEecCCcEEEe-ccchHHhhhh--cccccccCCceEEEecCCc----
Confidence 223334555443 44444443 344 46556654421 1111111112 234443 34677776664
Q ss_pred EEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
+++-+++.-.-.-.+++... ..+..+.+++ ..+++.+.+..+.. +.-.+. .......+.|.|.++..+..+..-
T Consensus 695 l~i~tid~iqkl~irtvpl~-~~prrI~~q~-~sl~~~v~s~r~e~--~~~~~~-ee~~~s~l~vlD~nTf~vl~~hef- 768 (1096)
T KOG1897|consen 695 LTIGTIDEIQKLHIRTVPLG-ESPRRICYQE-SSLTFGVLSNRIES--SAEYYG-EEYEVSFLRVLDQNTFEVLSSHEF- 768 (1096)
T ss_pred eEEEEecchhhcceeeecCC-CChhheEecc-cceEEEEEeccccc--chhhcC-CcceEEEEEEecCCceeEEeeccc-
Confidence 88888775321112232221 1224566666 33444554432111 110000 011234577888888765543211
Q ss_pred CCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC----------CCcEEEEeCCCCCccccccCCceeeeeecccccCC
Q 000992 379 MPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS----------DGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 448 (1196)
Q Consensus 379 vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~----------dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (1196)
.++ +.-..|.++.|..|.+ ..+++|+. .|.|.++.......+ ++.... .-.+
T Consensus 769 ~~~-------E~~~Si~s~~~~~d~~-t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--------~~v~e~--~v~G 830 (1096)
T KOG1897|consen 769 ERN-------ETALSIISCKFTDDPN-TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--------ELVAET--VVKG 830 (1096)
T ss_pred ccc-------ceeeeeeeeeecCCCc-eEEEEEEEeeccCCCCcccceEEEEEEecCCce--------eeeeee--eecc
Confidence 011 1112456677998852 77888763 355555555431111 111100 0012
Q ss_pred cEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 449 SVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 449 ~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.+..+.-. +|++||.- ++++.++..+
T Consensus 831 av~aL~~f-ngkllA~I----n~~vrLye~t 856 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLAGI----NQSVRLYEWT 856 (1096)
T ss_pred ceeehhhh-CCeEEEec----CcEEEEEEcc
Confidence 34333333 56777632 2678888874
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.38 E-value=3.1 Score=48.96 Aligned_cols=207 Identities=12% Similarity=0.022 Sum_probs=99.4
Q ss_pred EEccCCCEEEEEEC---CCcEEEEECCCCeEEEeeeec-CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc
Q 000992 82 DYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 82 ~~spd~~~La~as~---dG~I~lw~~~~~~~e~vg~~~-~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
.|.+||+.|+.+++ ...+.+.|+.++++.-+.... .......+||+++.|.......+|.-.+ -+...+..+-.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vd--L~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVD--LDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEE--TTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEE--CCcCcEEEEEE
Confidence 46899998888776 445677888998876333222 1223577899999998887666664433 12222222221
Q ss_pred ccCccccccCccccCCCCeEEEEEc--cCCceEEEeeccccc----------------cCCCCEEEEEECCCCcEEEEec
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWR--GDGKYFATLSEFCNS----------------SKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWs--pDG~~lAsvss~d~~----------------~~~d~~irVWd~~~G~l~~~~e 219 (1196)
.+ ++.+-...|. .||..++.+- ...+ +...+.|.--|..+|+....++
T Consensus 120 ~p-------------~~~~g~gt~v~n~d~t~~~g~e-~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 120 VP-------------DDWKGYGTWVANSDCTKLVGIE-ISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp ---------------TTEEEEEEEEE-TTSSEEEEEE-EEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE
T ss_pred CC-------------cccccccceeeCCCccEEEEEE-EeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe
Confidence 11 2334457774 5677665221 1111 1122345555777998877776
Q ss_pred cCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 220 LKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 220 ~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
...+...+-||| |..+|+.|-..+-..-...|.+.+.+|.... .+..+ ....+.-=-|+|||..|.-.+....+.
T Consensus 186 -~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~--~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~ 262 (386)
T PF14583_consen 186 -DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK--KVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ 262 (386)
T ss_dssp -ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E--ESS---TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred -cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce--eeecCCCCcccccccccCCCCEEEEEeecCCCC
Confidence 455667788888 6778888765432111234555566654322 22211 123455567999999888765532221
Q ss_pred --eEEEEEecCC
Q 000992 298 --SVKICFFSNN 307 (1196)
Q Consensus 298 --~V~lW~~~n~ 307 (1196)
.|.-.+..+.
T Consensus 263 ~~~i~~~d~~t~ 274 (386)
T PF14583_consen 263 DFWIAGYDPDTG 274 (386)
T ss_dssp -EEEEEE-TTT-
T ss_pred ceEEEeeCCCCC
Confidence 3444444443
No 356
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.37 E-value=1.7 Score=49.89 Aligned_cols=226 Identities=16% Similarity=0.155 Sum_probs=105.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|. +.+.-|.+...+.|++=. ..++ .|+...++.+ . + ..-...+|.|.. .+ ..++++.| +.+
T Consensus 18 ~l~dV~F~-d~~~G~~VG~~g~il~T~---DGG~-tW~~~~~~~~--~-~--~~~~l~~I~f~~-~~-g~ivG~~g-~ll 84 (302)
T PF14870_consen 18 PLLDVAFV-DPNHGWAVGAYGTILKTT---DGGK-TWQPVSLDLD--N-P--FDYHLNSISFDG-NE-GWIVGEPG-LLL 84 (302)
T ss_dssp -EEEEEES-SSS-EEEEETTTEEEEES---STTS-S-EE-----S----------EEEEEEEET-TE-EEEEEETT-EEE
T ss_pred ceEEEEEe-cCCEEEEEecCCEEEEEC---CCCc-cccccccCCC--c-c--ceeeEEEEEecC-Cc-eEEEcCCc-eEE
Confidence 77788887 666677777777666532 1222 2553221111 0 0 012467787754 33 44556666 445
Q ss_pred EECCCC-eEEEee---eecCcEEEEEECCCCCEEEEEeCCceEEEEe---ccCceeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGN-ATEVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~-~~e~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~---~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
-..+++ ..+.+. ..++....+..-.++ ....++..|.|..-+ +.|..+..- ...
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~------------------~~g 145 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSE------------------TSG 145 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S---------------------
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccC------------------Ccc
Confidence 555554 333321 123333333333443 333455566664322 224332211 113
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+..+.-++||+|+| +++. -..++-|+.-...-..........+.++.|+|+|++...+ +. ..|.+
T Consensus 146 s~~~~~r~~dG~~va-vs~~------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G------g~~~~ 211 (302)
T PF14870_consen 146 SINDITRSSDGRYVA-VSSR------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG------GQIQF 211 (302)
T ss_dssp -EEEEEE-TTS-EEE-EETT------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT------TEEEE
T ss_pred eeEeEEECCCCcEEE-EECc------ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC------cEEEE
Confidence 567888899999999 7762 2566778762222333333455678999999999987765 32 34555
Q ss_pred EeCCCeeEEEEEe---cc-CCCCcEEEEEEccCCCeeEEEEccC
Q 000992 255 YERNGLERSSFDI---NE-QIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 255 ~e~nGl~~~~f~l---~~-~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
=+ .+....+|.- +. .....+.+++|.+++++.|+++...
T Consensus 212 s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 212 SD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred cc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 44 1222222321 11 1123489999999999999887654
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.34 E-value=1.2 Score=51.29 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=65.4
Q ss_pred CcEEEEECCCCeEEEeeeecCc-EEEEEECCCCCEEEEEeC----------CceEEEEe-ccCceeeeeecccccCcccc
Q 000992 97 GLLLLHSVDGNATEVVGRVEGG-VRFISPSPDGDLLGVTTG----------FGQILVMT-HDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~-I~~~awSPDg~~LA~~s~----------d~tV~l~~-~~~d~~~~~~l~~~~~~~~V 164 (1196)
+.|.++|.+++++ +|-++.+ .-.+..||||+.+.+++. ...|.+|+ .+..+..|+.+........+
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4688889888775 3433332 334778999999998752 23466775 45566677766543100000
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
.....++.|+||+++. +--.-| -..|-|-|...++......
T Consensus 95 ---------~~~~~~~ls~dgk~~~-V~N~TP----a~SVtVVDl~~~kvv~ei~ 135 (342)
T PF06433_consen 95 ---------PYKNMFALSADGKFLY-VQNFTP----ATSVTVVDLAAKKVVGEID 135 (342)
T ss_dssp -----------GGGEEE-TTSSEEE-EEEESS----SEEEEEEETTTTEEEEEEE
T ss_pred ---------ccccceEEccCCcEEE-EEccCC----CCeEEEEECCCCceeeeec
Confidence 1224578999999987 554433 3678999997777766543
No 358
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.0084 Score=70.00 Aligned_cols=159 Identities=15% Similarity=0.161 Sum_probs=100.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC-------CeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG-------NATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~-------~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~ 147 (1196)
..|..++-..+.+.+++++.|.||++|+... ..+. +...|...|..+-|=.|-+.+|++ |+-|-+ |
T Consensus 736 ~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl----W 809 (1034)
T KOG4190|consen 736 EKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL----W 809 (1034)
T ss_pred HHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee----e
Confidence 3566666666778899999999999999753 1233 556788999999999998888664 666766 5
Q ss_pred ceeeeeeccccc-CccccccCccccCCCCeEEEEE--ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-----c
Q 000992 148 DLLYENPLEELA-EGFDVHEPELSSSFSFKSPISW--RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-----E 219 (1196)
Q Consensus 148 d~~~~~~l~~~~-~~~~Vs~tqf~~~~~~v~~isW--spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-----e 219 (1196)
||..+..+..-. ..++ +.+..|.- +-|...+. .+. +...+||++|...++-...+ .
T Consensus 810 DPFigr~Laq~~dapk~----------~a~~~ikcl~nv~~~ili-Agc-----saeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKE----------GAGGNIKCLENVDRHILI-AGC-----SAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred cccccchhHhhhcCccc----------CCCceeEecccCcchhee-eec-----cchhhheeeecccccceeeEEeccCC
Confidence 565554443211 1110 11111211 12333333 221 13579999998776543322 2
Q ss_pred cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeE
Q 000992 220 LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLER 262 (1196)
Q Consensus 220 ~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~ 262 (1196)
+..+.+.+++-.|.|+.+|.+-.. ..|.+.+ |||...
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSn------Gci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSN------GCIAILDARNGKVI 911 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcC------CcEEEEecCCCcee
Confidence 345778999999999999987553 3566665 777543
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.25 E-value=0.67 Score=55.42 Aligned_cols=256 Identities=16% Similarity=0.108 Sum_probs=123.7
Q ss_pred ceeEEeeecCCCEEEEEeCCC--cEEEEecccccc--cc----------------cceeecccc----ccccccCCC---
Q 000992 22 ILQFSALDIEQNRLFFASSAN--NIYSAQLSSFQN--ER----------------ASIKTAISA----EIEHIDLEP--- 74 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~--~i~~~~~~~~~~--~~----------------~~~~~~~~~----~l~~~~~~~--- 74 (1196)
.+....+-.++-++.++..++ .|++|..|.+.+ +. .-.+.++.. +++ ..|+|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~-~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK-EGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S-EEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc-cccCchhh
Confidence 355667778888888886655 577888762221 00 001111111 111 12344
Q ss_pred ----CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee---------ecCcEEEEEEC---CCC-----CEEEE
Q 000992 75 ----GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR---------VEGGVRFISPS---PDG-----DLLGV 133 (1196)
Q Consensus 75 ----~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~---------~~~~I~~~awS---PDg-----~~LA~ 133 (1196)
.+.|++++.| |--++|+|+++|.+.+.|+.+..+-.-.+ ....|+++.|+ .++ =.|..
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4889999998 55699999999999999999865532222 22468899997 333 35888
Q ss_pred EeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE-EccC-Cc--------------------eEEEe
Q 000992 134 TTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS-WRGD-GK--------------------YFATL 191 (1196)
Q Consensus 134 ~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is-WspD-G~--------------------~lAsv 191 (1196)
||..|++.++...-+.-...... .+..+ ..+++.+..|. +..| |+ +++ +
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~------~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV-v 231 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQ------FAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV-V 231 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEE------EEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE-E
T ss_pred EeCCCCEEEEEEecCCCCceEEE------Eeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE-E
Confidence 89999998764221000000000 00000 01122223332 2111 11 333 2
Q ss_pred eccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE-----cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE-EEE
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW-----MPSGANIAAVYDRKSENKCPSIVFYERNGLER-SSF 265 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw-----sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~-~~f 265 (1196)
.+ ++.+||+..-+++.........-....+.+ ...|..|++-..+ ..|++|..=+|+. .+.
T Consensus 232 vS-------e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~------G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 232 VS-------ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN------GSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp E--------SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT------SEEEEEETTT--EEEEE
T ss_pred Ec-------ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECC------CcEEEEECCCchHhhcc
Confidence 22 478999998677665544422223345555 3456666666553 4688887666543 233
Q ss_pred EeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 266 DINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 266 ~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.++.. +...+...+++++|+++.-.+... +++|++-
T Consensus 299 ~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE----~~l~sv~ 335 (395)
T PF08596_consen 299 SLPPPLDSRRLSSSSISRNGDIFYWTGPSE----IQLFSVW 335 (395)
T ss_dssp E-SS---HHHHTT-EE-TTS-EEEE-SSSE----EEEEEEE
T ss_pred cCCCccccccccccEECCCCCEEEEeCccc----EEEEEEE
Confidence 34311 112355677899999777665443 6666654
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=2.7 Score=50.19 Aligned_cols=244 Identities=11% Similarity=0.027 Sum_probs=139.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCc-EEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANN-IYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~dG~I 99 (1196)
.....++++++..+|.....+. +...+. .... +.. .... .......++.++++. ..+....++.|
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~--~~n~----~~~----~~~~---g~~~p~~i~v~~~~~~vyv~~~~~~~v 98 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDA--TSNT----VTQ----SLSV---GGVYPAGVAVNPAGNKVYVTTGDSNTV 98 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccc--ccce----eee----eccC---CCccccceeeCCCCCeEEEecCCCCeE
Confidence 4567889999999999866443 333332 1111 110 0001 114567888999998 44555556899
Q ss_pred EEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC---CceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~---d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.|..+.++.........-..++|+|||+.+-.+.. ++++.+.+..+..+... ... +.. .
T Consensus 99 ~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~v-------------G~~-P- 162 (381)
T COG3391 99 SVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPV-------------GNT-P- 162 (381)
T ss_pred EEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Eec-------------CCC-c-
Confidence 9999776544311112225678999999988777754 57776655444333322 111 111 1
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-e----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-S----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
..++++|||+.+. +.. ..+.+|-+.|. ++..... + -+....-..++++|+|+.+-....... ...
T Consensus 163 ~~~a~~p~g~~vy-v~~-----~~~~~v~vi~~-~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~---~~~ 232 (381)
T COG3391 163 TGVAVDPDGNKVY-VTN-----SDDNTVSVIDT-SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG---SNN 232 (381)
T ss_pred ceEEECCCCCeEE-EEe-----cCCCeEEEEeC-CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC---Cce
Confidence 6899999999776 443 14688999998 4443331 1 111122378999999997766544310 134
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 252 IVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
|...+...........+.... ....++.+|+|+..-+..... +.|.+-+..+.
T Consensus 233 v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~--~~V~vid~~~~ 285 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQG--GTVSVIDGATD 285 (381)
T ss_pred EEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCC--CeEEEEeCCCC
Confidence 555553321111111111111 355789999999888775542 26766666554
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.15 E-value=0.38 Score=59.02 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=81.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+...++|.-.+.+.++++.+.+|.++- ..+... + ++.+ + ..+.++....|++...+|.|+..|.|.+
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R--~~~~~~--~--~~~~--~----~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNR--HTGEMR--K--LKNE--G----ATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEec--Cchhhh--c--cccc--C----ccceEEEEEecchhHhhhhhcCCceEEe
Confidence 6777889999999999999998999887 455432 1 1111 0 1245777888999999999999999998
Q ss_pred EECCCCe---EEEe----eeecCcEEEEEECCCCCEEEEEeCCceEEE
Q 000992 102 HSVDGNA---TEVV----GRVEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1196)
Q Consensus 102 w~~~~~~---~e~v----g~~~~~I~~~awSPDg~~LA~~s~d~tV~l 142 (1196)
+-.+.+. ...+ ..|...|+|++||+||..|-+|...|+|.+
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 8765421 1112 225678999999999999999999999865
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.11 E-value=4 Score=48.10 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=87.7
Q ss_pred EEECCCCCEEEEEeC-Cc--eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccccc
Q 000992 122 ISPSPDGDLLGVTTG-FG--QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS 198 (1196)
Q Consensus 122 ~awSPDg~~LA~~s~-d~--tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~ 198 (1196)
=+|.+||+.|..++. || ++.+++. +.-.-.+|...+ . +......++|+++.+..+-.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL--~t~~i~QLTdg~------------g-~~~~g~~~s~~~~~~~Yv~~----- 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDL--ATGEITQLTDGP------------G-DNTFGGFLSPDDRALYYVKN----- 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEET--TT-EEEE---SS--------------B-TTT-EE-TTSSEEEEEET-----
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEc--ccCEEEECccCC------------C-CCccceEEecCCCeEEEEEC-----
Confidence 479999999888875 44 4444432 111112222211 0 11124677888887653332
Q ss_pred CCCCEEEEEECCCCcEEEEeccCCCceeEEEEc--CCCCeEEEEecCCC---C-------------CCCCeEEEEe-CCC
Q 000992 199 KLHKRLKVWERDSGTLQASSELKAFMGAVLEWM--PSGANIAAVYDRKS---E-------------NKCPSIVFYE-RNG 259 (1196)
Q Consensus 199 ~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws--PdG~~IAs~s~d~~---~-------------~~~~~V~~~e-~nG 259 (1196)
.+.++--|.++++.....+-.++++....|. .|+.+++....... . .....|.--+ +.|
T Consensus 101 --~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 101 --GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp --TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred --CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 3677777888887766667677888778885 45777765532110 0 0001111111 233
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceE--EEEEecC---CEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV--KICFFSN---NHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V--~lW~~~n---~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
...-.| ....++.-+.|||.-.-|++-|..++.+.| +||.++. ..|-+++. ..... ..=-|.|+|..
T Consensus 179 ~~~~v~----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~---~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 179 ERKVVF----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR---MEGESVGHEFWVPDGST 251 (386)
T ss_dssp -EEEEE----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTEEEEEEEE-TTSS-
T ss_pred ceeEEE----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC---CCCcccccccccCCCCE
Confidence 332221 123578889999988888888888877754 8898762 12222111 11112 44569999875
Q ss_pred e
Q 000992 334 Q 334 (1196)
Q Consensus 334 ~ 334 (1196)
.
T Consensus 252 i 252 (386)
T PF14583_consen 252 I 252 (386)
T ss_dssp E
T ss_pred E
Confidence 3
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.10 E-value=0.094 Score=63.11 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=77.6
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCC-----CCC
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSEN-----KCP 250 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~-----~~~ 250 (1196)
..+++||||+++| .+-..++ .+..+++|+|.++|+.+... ....+ .+++|.+||+.+.....+.... ...
T Consensus 127 ~~~~~Spdg~~la-~~~s~~G-~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLA-YSLSDGG-SEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEE-EEEEETT-SSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEE-EEecCCC-CceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4678999999999 5532221 34568999999999776532 22111 2399999999887776654211 145
Q ss_pred eEEEEeCCCee-EEEEEeccCCCCc-EEEEEEccCCCeeEEEEccCCc-ceEEEEEecC
Q 000992 251 SIVFYERNGLE-RSSFDINEQIDST-VELLKWNCMSDLLAAVVRFEEY-DSVKICFFSN 306 (1196)
Q Consensus 251 ~V~~~e~nGl~-~~~f~l~~~~~~~-V~~laWSpDg~~LAs~~~d~~~-~~V~lW~~~n 306 (1196)
.|.+|.+.... .....+..+.... ...+.+|+||++|.+.+..+.. ..|.+-+..+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 67777764322 1123333333333 6789999999999987776633 3455555544
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.016 Score=69.59 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=58.4
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
+.-+-|+|.=.+||.+..+ +.|.+...|- ++-++++.|+.....+++|.|||+.||+|..|| +|+|-|+
T Consensus 23 i~~~ewnP~~dLiA~~t~~------gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG---~I~L~Dv 91 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEK------GELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDG---TIRLHDV 91 (665)
T ss_pred eEEEEEcCccchhheeccC------CcEEEEEecc--ceeEeccCCCCccceeeeecCCCCEEEEEecCC---eEEEEEc
Confidence 4678899999999998874 4588887773 344566655544345999999999999999999 9999999
Q ss_pred cCCE
Q 000992 305 SNNH 308 (1196)
Q Consensus 305 ~n~~ 308 (1196)
...+
T Consensus 92 e~~~ 95 (665)
T KOG4640|consen 92 EKGG 95 (665)
T ss_pred cCCC
Confidence 8765
No 365
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.09 E-value=0.011 Score=67.09 Aligned_cols=197 Identities=16% Similarity=0.068 Sum_probs=63.6
Q ss_pred hcccHHHHhhCHHHHHHHHHHc-CC-------CcHHHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcc
Q 000992 936 MRYTIDLRLQRFENALKHIVSM-GD-------SYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~-g~-------~~~~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
+-+.+.--.|+|++|++.|.+. .. +.....-++.... +.|+.|++.| .-+......+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccc
Confidence 3344544566677777776321 11 0011112233555 6677777666 1222234445555555 467
Q ss_pred cCHHHHHHHHHhC-------CCHHHHHHHHHHcCCHHHHHHHHhhcC-CC-HHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1004 KCFEDAATTYFCC-------SSLEKAMKAYRASGNWSGVLTVAGLLK-LG-KDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1004 ~~~~eAa~~y~~a-------g~~~kAl~~y~~~g~w~~al~la~~l~-~~-~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
+++++|..+++.+ .-+..++.+|...++|+++..+...+. .. ...-..+...+|..+.+.|++.+|.++|.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777666554 234567777788888887776554421 01 01123466778888888899999988887
Q ss_pred HhcC----CH---HHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1075 DYCG----DV---TNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137 (1196)
Q Consensus 1075 ~yl~----d~---~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~v~~~l~e~~~~~~e~l~~~~~~~~~~ 1137 (1196)
+-+. |. ..-+-++++.++.++|..+........ . -+|.+...+......|.+.++.+.-+
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~-~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--P-DDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---H-TSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--c-CHHHHHHHHHHHhccccccccccccc
Confidence 7543 22 233556778888888666554432110 1 14445556666666666666555433
No 366
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.09 E-value=1.3 Score=48.42 Aligned_cols=188 Identities=12% Similarity=0.041 Sum_probs=97.5
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCcc
Q 000992 84 LMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 84 spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~ 162 (1196)
.+++..+.+++.+|.+..||..+|++.-.-...+.+.... ..++..+.+++.++.|..++ .+++.+-.......+ ..
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~ 110 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP-PA 110 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC-TC
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeecccccc-cc
Confidence 4467777788899999999998876531111112211111 33556667777777777776 555554442111111 00
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc-----------eeEEEEc
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----------GAVLEWM 231 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~-----------v~slaws 231 (1196)
......+...+|..++ ++. .++.|..+|..+|+++......... ...+.+.
T Consensus 111 -----------~~~~~~~~~~~~~~~~-~~~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 111 -----------GVRSSSSPAVDGDRLY-VGT------SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp -----------STB--SEEEEETTEEE-EEE------TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred -----------ccccccCceEecCEEE-EEe------ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 0011122222255555 343 2478999998899998776442211 1222222
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+| .|..++.+. ..+.+ + .+|... +..+ . ..+..+ ..+++..|.+++.++ .|..||..+++
T Consensus 173 -~~-~v~~~~~~g-----~~~~~-d~~tg~~~--w~~~-~--~~~~~~-~~~~~~~l~~~~~~~---~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 -DG-RVYVSSGDG-----RVVAV-DLATGEKL--WSKP-I--SGIYSL-PSVDGGTLYVTSSDG---RLYALDLKTGK 233 (238)
T ss_dssp -TT-EEEEECCTS-----SEEEE-ETTTTEEE--EEEC-S--S-ECEC-EECCCTEEEEEETTT---EEEEEETTTTE
T ss_pred -CC-EEEEEcCCC-----eEEEE-ECCCCCEE--EEec-C--CCccCC-ceeeCCEEEEEeCCC---EEEEEECCCCC
Confidence 44 333333321 13444 4 344322 2222 1 112221 457788888888777 89999988764
No 367
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.08 E-value=0.1 Score=59.53 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=43.1
Q ss_pred hHHHHhhc---CCcHHHHHHHHHHHHHHhcc-cCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHH
Q 000992 976 FPLGLKLI---TDPAKMEQVLEAWADHLSDV-KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAK 1051 (1196)
Q Consensus 976 y~~AL~L~---~d~~~~~~i~~~~A~~L~~~-~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~ 1051 (1196)
|.+|+++| +++...-.++...|+.++.. +++++|..+|.+ |++.|...+. +.....
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~------A~~~y~~e~~--------------~~~a~~ 156 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQK------AAELYEQEGS--------------PHSAAE 156 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHH------HHHHHHHTT---------------HHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHCCC--------------hhhHHH
Confidence 44455555 34444445555555555555 455555444432 4444444442 223345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+.+.++|.+|..+|.+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 667778888888899999988877
No 368
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.08 E-value=0.072 Score=56.98 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
++..+|..+...+++++|...|.++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4445566666666666666666554
No 369
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.07 E-value=0.17 Score=60.98 Aligned_cols=151 Identities=16% Similarity=0.188 Sum_probs=87.8
Q ss_pred ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC-----CeeEEEEccCCcce
Q 000992 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-----DLLAAVVRFEEYDS 298 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-----~~LAs~~~d~~~~~ 298 (1196)
.++.||| -||+.+.-..-.-. ...++|=|.+ ..|+| ..|..++|+|-+ .+||+.... .
T Consensus 21 PvhGlaW-TDGkqVvLT~L~l~---~gE~kfGds~--viGqF-------EhV~GlsW~P~~~~~~paLLAVQHkk----h 83 (671)
T PF15390_consen 21 PVHGLAW-TDGKQVVLTDLQLH---NGEPKFGDSK--VIGQF-------EHVHGLSWAPPCTADTPALLAVQHKK----H 83 (671)
T ss_pred cccceEe-cCCCEEEEEeeeee---CCccccCCcc--Eeecc-------ceeeeeeecCcccCCCCceEEEeccc----e
Confidence 4688999 57776543321100 1223332221 23444 259999999964 488887655 4
Q ss_pred EEEEEec-----CCEEEEEEEEEEecCCc---EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEE
Q 000992 299 VKICFFS-----NNHWYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKIL 370 (1196)
Q Consensus 299 V~lW~~~-----n~~wylkq~l~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~ 370 (1196)
|.+|.+. ..+|...|+-......+ ....|||.++. |.+.+... +. ..+++. .|+++++
T Consensus 84 VtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~i-L~VLT~~d-vS---V~~sV~---------~d~srVk 149 (671)
T PF15390_consen 84 VTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAI-LTVLTARD-VS---VLPSVH---------CDSSRVK 149 (671)
T ss_pred EEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCce-EEEEecCc-ee---Eeeeee---------eCCceEE
Confidence 9999975 45777777655432221 34789998876 67776422 11 112221 3555554
Q ss_pred EeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 371 VTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 371 lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
. .+.-.+.|.+..|.+|| ++|+++-.. .++.|-|+
T Consensus 150 a---------------Di~~~G~IhCACWT~DG--~RLVVAvGS-sLHSyiWd 184 (671)
T PF15390_consen 150 A---------------DIKTSGLIHCACWTKDG--QRLVVAVGS-SLHSYIWD 184 (671)
T ss_pred E---------------eccCCceEEEEEecCcC--CEEEEEeCC-eEEEEEec
Confidence 2 12345678999999999 777665433 55444443
No 370
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.01 E-value=0.09 Score=63.21 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=101.5
Q ss_pred cHHHHhhCHHHHHHHHHHcCCCcH---------------HHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcc
Q 000992 939 TIDLRLQRFENALKHIVSMGDSYH---------------ADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~g~~~~---------------~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
.|-.-+++|++|+.-|.++=..+. .--+++..++ |++||++- | .....+...|.-|.+.
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~---Ykral~~~--P-~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT---YKRALELQ--P-NFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH---HHHHHhcC--C-CchHHHhHHHHHHHhc
Confidence 344556678888887776532211 2226667777 88888765 1 2344566777888999
Q ss_pred cCHHHHHHHHHhCC----CHHHHH----HHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCS----SLEKAM----KAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag----~~~kAl----~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
|+..||..+|.+|- ++..|+ .+|.+.|..++|..+=.. +...+ +..+-...||..++++|++.+|..+|.
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 99999999998763 445554 566677776666643322 11111 234455678888999999999888876
Q ss_pred Hh--------------------cCCHHHHHHHHHHhcCHHHHHH
Q 000992 1075 DY--------------------CGDVTNGISLLIDARDWEEALR 1098 (1196)
Q Consensus 1075 ~y--------------------l~d~~~Ai~~y~~~~~w~eA~r 1098 (1196)
+- .||+.+|+++|-++=+..-|+.
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 52 4889999999998877665554
No 371
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.99 E-value=0.78 Score=56.88 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCEEEEEEccCCCEEEEEE---CCC-cEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-cc---
Q 000992 76 DSITAFDYLMEKEALIVGT---SSG-LLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HD--- 146 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as---~dG-~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~--- 146 (1196)
+....++++|||+.+.+.+ +.| ++...+...... -.+. -.+| .++.+||+..-+ .+++|.+.+ +.
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn--i~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~ 308 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN--IARI--EEAVKAGKFKTI--GGSKVPVVDGRKAAN 308 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc--hHHH--HHhhhCCCEEEE--CCCEEEEEECCcccc
Confidence 4567789999999998875 332 233333322110 0111 0011 145678887665 345677765 22
Q ss_pred --CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-----------
Q 000992 147 --WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT----------- 213 (1196)
Q Consensus 147 --~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~----------- 213 (1196)
+..+..++... ....+..||||+|+. +++ ....++-|.|....+
T Consensus 309 ~~~~v~~yIPVGK-----------------sPHGV~vSPDGkyly-Van-----klS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 309 AGSALTRYVPVPK-----------------NPHGVNTSPDGKYFI-ANG-----KLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CCcceEEEEECCC-----------------CccceEECCCCCEEE-EeC-----CCCCcEEEEEChhhhhhhhccCCccc
Confidence 33444444332 237899999999998 665 245789999985432
Q ss_pred -EEEEeccCCCce-eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 214 -LQASSELKAFMG-AVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 214 -l~~~~e~~~~~v-~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+...-+ -|+- -..+|.++|+...|---| ..|+-|+.
T Consensus 366 ~vvaeve--vGlGPLHTaFDg~G~aytslf~d------sqv~kwn~ 403 (635)
T PRK02888 366 AVVAEPE--LGLGPLHTAFDGRGNAYTTLFLD------SQIVKWNI 403 (635)
T ss_pred eEEEeec--cCCCcceEEECCCCCEEEeEeec------ceeEEEeh
Confidence 111111 1222 467999999866665543 45888984
No 372
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.93 E-value=1.2 Score=57.26 Aligned_cols=143 Identities=15% Similarity=0.037 Sum_probs=88.5
Q ss_pred HHhhCHHHHHHHHHHcC---CCcH----HHHHHHHHHHhcChHH----HHhhc-----CCcHHHHHHHHHHHHHHhcccC
Q 000992 942 LRLQRFENALKHIVSMG---DSYH----ADCLNLMKKYAQLFPL----GLKLI-----TDPAKMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g---~~~~----~~ale~~~~~~~ly~~----AL~L~-----~d~~~~~~i~~~~A~~L~~~~~ 1005 (1196)
..+|+|++|+..|.++- ++.. ..+. ++... +.|++ |+.+| .+|. ...++..+|..|..+++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~-~l~~~-G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGL-AYYQS-GRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHc-CCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCC
Confidence 35788888888777642 2111 1121 22333 44443 45544 3444 34677788999999999
Q ss_pred HHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1006 FEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
+++|...|.++-.. .....+|...|+|++|+....+.- ..++.. .....++..|...|++.+|...|.+.
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~-~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS-KWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988876321 112367778899999987665431 122222 23444677888999999999998875
Q ss_pred c--------CCHHHHHHHHH
Q 000992 1077 C--------GDVTNGISLLI 1088 (1196)
Q Consensus 1077 l--------~d~~~Ai~~y~ 1088 (1196)
+ .++++|+..|.
T Consensus 379 l~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 379 IQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHhChhhchhhHHHHHHHHH
Confidence 3 34455555444
No 373
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.64 Score=53.65 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=88.5
Q ss_pred EEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCce-eeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 110 EVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDL-LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~-~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
+....+..-|..++|||..+ +|.+++-+++|++++..-.. +.... .+ ..+++.+|--|...
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~----------------a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI----------------AY-NQIWSCCWDLDERH 249 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee----------------cc-CCceeeeeccCCcc
Confidence 33333456799999999999 78888999999998632111 11111 11 46799999999987
Q ss_pred EEEeeccccccCCCCEEEEEECCC--CcEEE-EeccCCCceeEE------EEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDS--GTLQA-SSELKAFMGAVL------EWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~--G~l~~-~~e~~~~~v~sl------awsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+. -++ ..++.|-|||... |-+.. +.+-....+..| .-.|.|-+++.++. ...|||..
T Consensus 250 ~I-YaG-----l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--------~l~f~ei~ 315 (463)
T KOG1645|consen 250 VI-YAG-----LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--------VLQFYEIV 315 (463)
T ss_pred ee-EEe-----ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--------hhhhhhhh
Confidence 77 354 3578999999742 22111 000111122222 45667777777665 36678754
Q ss_pred CeeE-EEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 259 GLER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 259 Gl~~-~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
+-.. --.+++....+...+.+..+-++.+.......
T Consensus 316 ~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~ 352 (463)
T KOG1645|consen 316 FSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSN 352 (463)
T ss_pred ccccCCCcccccCCCcceeeeeecCccceEEEEecCC
Confidence 3210 00112222234566666767666665555543
No 374
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.85 E-value=0.41 Score=58.58 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1045 GKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1045 ~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
...++.....+++..+..+++|++|..+|.+
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4456666677777777777777777666554
No 375
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.80 E-value=0.0048 Score=73.85 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=125.3
Q ss_pred CCEEEEEEccCC--CEEEEEECCCcEEEEECCCC---eEEEeeeecCcEEEEEECC-CCCEEEEEe----CCceEEEEec
Q 000992 76 DSITAFDYLMEK--EALIVGTSSGLLLLHSVDGN---ATEVVGRVEGGVRFISPSP-DGDLLGVTT----GFGQILVMTH 145 (1196)
Q Consensus 76 ~~v~~v~~spd~--~~La~as~dG~I~lw~~~~~---~~e~vg~~~~~I~~~awSP-Dg~~LA~~s----~d~tV~l~~~ 145 (1196)
..+.+++++-+. ..|++|.++|.|.+-+.... -.|.+..+...-++.||+| |-+.||.+- .|-.+.+|+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd- 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD- 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee-
Confidence 456677766654 58999999999999776431 2455555677889999988 566777662 244566664
Q ss_pred cCceeeeeecccccCccccccCcccc-CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~-~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~ 224 (1196)
.-+....... ..+|.+ .-++..+++|--|-+.+. .|. ..|.+.++|. .-.+.+..+--...
T Consensus 136 ---i~s~ltvPke-------~~~fs~~~l~gqns~cwlrd~klvl-aGm------~sr~~~ifdl-Rqs~~~~~svnTk~ 197 (783)
T KOG1008|consen 136 ---INSLLTVPKE-------SPLFSSSTLDGQNSVCWLRDTKLVL-AGM------TSRSVHIFDL-RQSLDSVSSVNTKY 197 (783)
T ss_pred ---cccccCCCcc-------ccccccccccCccccccccCcchhh-ccc------ccchhhhhhh-hhhhhhhhhhhhhh
Confidence 2222111000 112222 234556899998888776 343 3588999997 33344433333445
Q ss_pred eeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEec--cCCCCcEEEEEEccCCC-eeEEEEccCCcce
Q 000992 225 GAVLEWMP-SGANIAAVYDRKSENKCPSIVFYER--NGLERSSFDIN--EQIDSTVELLKWNCMSD-LLAAVVRFEEYDS 298 (1196)
Q Consensus 225 v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l~--~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~ 298 (1196)
+..+..+| .++++|+..+ ..|.+||. |-...-...++ .+....+..++|.|-.. +||+...|. .+
T Consensus 198 vqG~tVdp~~~nY~cs~~d-------g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS--~t 268 (783)
T KOG1008|consen 198 VQGITVDPFSPNYFCSNSD-------GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS--IT 268 (783)
T ss_pred cccceecCCCCCceecccc-------CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc--ce
Confidence 67788899 9999998875 36899982 21100000011 11123599999999775 567766665 48
Q ss_pred EEEEEec
Q 000992 299 VKICFFS 305 (1196)
Q Consensus 299 V~lW~~~ 305 (1196)
|+++++.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8888864
No 376
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=95.72 E-value=0.073 Score=60.78 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=77.7
Q ss_pred HHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCH------HHHHHHHHhCCCHHHHHHH
Q 000992 954 IVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCF------EDAATTYFCCSSLEKAMKA 1025 (1196)
Q Consensus 954 l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~------~eAa~~y~~ag~~~kAl~~ 1025 (1196)
+.-.|+ +++|+++..++ ++|..||=|. .+++.++++..+|.+.-...+.. --...+-..+|+.+.+++.
T Consensus 5 ~Ll~G~--~~~Av~~al~~-~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~ 81 (284)
T PF12931_consen 5 LLLVGN--REEAVELALDN-GLWAHALLLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDE 81 (284)
T ss_dssp HHHTT---HHHHHHHHHHT-T-HHHHHHHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHhCCC--HHHHHHHHHHC-CChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHH
Confidence 444576 79999999999 9999999998 89999999999998887433332 2234445678999999887
Q ss_pred HHHc------------CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1026 YRAS------------GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1026 y~~~------------g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
+... ++|++.+.+.-... .+++. ..+..+++.|.+.|+..+|--+|+- +|
T Consensus 82 l~~~~~~~~~~~~~~~~~Wre~lA~il~N~-~~~~~-~~l~~LGd~L~~~g~~~aA~iCYll-ag 143 (284)
T PF12931_consen 82 LVPNSAAPPLEGEWDLDNWRETLAIILSNR-TPEDS-QALCALGDRLWQRGRVEAAHICYLL-AG 143 (284)
T ss_dssp HHH-----HHHHHHHHHSHHHHHHHHHHTS----SS--TT--HHHHHHHTT-HHHHHHHHHH-TT
T ss_pred hccccccccccccchhcCHHHHHHHHHhCC-CcccH-HHHHHHHHHHHhCCCcchhHHHHhH-cC
Confidence 7654 47999997765532 33332 3556699999999987777777775 65
No 377
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.63 E-value=0.065 Score=71.06 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=120.2
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCcccccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
+....+..+++.--|...++-.-+.- +-.+|.++.=.|---.-.++++||.|++|-.. .+.+. .+++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~k~-~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~--~~rt~-------- 2249 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIKH-PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV--CFRTA-------- 2249 (2439)
T ss_pred ccCCcccCCccccceecccceeEeec-ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE--Eeecc--------
Confidence 34444445555555655543332222 23568888888988999999999999987421 11111 11111
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
+. ..+..+.|+-+|.-|. ++- +|+.+-+|.. .-+.....+-|+...+...|=- .++|++++...
T Consensus 2250 ----g~-s~vtr~~f~~qGnk~~-i~d------~dg~l~l~q~-~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d- 2313 (2439)
T KOG1064|consen 2250 ----GN-SRVTRSRFNHQGNKFG-IVD------GDGDLSLWQA-SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD- 2313 (2439)
T ss_pred ----Cc-chhhhhhhcccCCcee-eec------cCCceeeccc-CCcceeccccCCccccceeeee--hhhhccccCCC-
Confidence 12 5678899999999888 653 6899999998 4443333344554445555544 67787776543
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
...|.+||.+-. +...-++.-|.+.+..+++-|.-++|.+|+.+| -|+|||+..
T Consensus 2314 --~~n~~lwDtl~~-~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G---~v~l~D~rq 2367 (2439)
T KOG1064|consen 2314 --NRNVCLWDTLLP-PMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG---EVCLFDIRQ 2367 (2439)
T ss_pred --CCcccchhcccC-cccceeeeecCCCceEEEEcCcceEEEecCCcC---cEEEeehHH
Confidence 467889985311 111112222456789999999999999999999 799999874
No 378
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.0048 Score=71.98 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=110.7
Q ss_pred cccccccCcccceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCE
Q 000992 11 PLNLELQSKDEILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA 89 (1196)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~ 89 (1196)
....++..|+ .+.+.+||.++|.+.+..+ .+.|+.|+++ ..+.. +|+.+... .-.-.+|++-+..
T Consensus 66 q~~le~n~tg-~aldm~wDkegdvlavlAek~~piylwd~n-~eytq-----qLE~gg~~-------s~sll~wsKg~~e 131 (615)
T KOG2247|consen 66 QVILELNPTG-KALDMAWDKEGDVLAVLAEKTGPIYLWDVN-SEYTQ-----QLESGGTS-------SKSLLAWSKGTPE 131 (615)
T ss_pred ceecccCCch-hHhhhhhccccchhhhhhhcCCCeeechhh-hhhHH-----HHhccCcc-------hHHHHhhccCCcc
Confidence 3444666667 8899999999999999866 5579999995 22222 12222111 1112789999999
Q ss_pred EEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc---C-----
Q 000992 90 LIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA---E----- 160 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~---~----- 160 (1196)
++++.-.|.+.|++..+.+ +...|.|...+.+.+|.|.+ +.+.++.|.++.+++...+.+......... .
T Consensus 132 l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k 210 (615)
T KOG2247|consen 132 LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGK 210 (615)
T ss_pred ccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhccceeeeeeccCccchhhhheee
Confidence 9999999999999998754 45778788999999999985 566777777776665555444333222211 0
Q ss_pred -----------------------------ccccccCccccCCCCeEEEEEccCCceEE
Q 000992 161 -----------------------------GFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 161 -----------------------------~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
.+++ ..+|+...+.+.++.|-.||....
T Consensus 211 ~n~w~kage~m~sVvsgKkhl~yak~nE~D~pv-al~fq~~~gni~cyrwylDg~i~i 267 (615)
T KOG2247|consen 211 VNGWGKAGETMVSVVSGKKHLMYAKYNELDEPV-ALQFQEKYGNIHCYRWYLDGYILI 267 (615)
T ss_pred eeccccccceeeeeeecHHHHHHHhhcCCCCcc-ceEeeecCCceeEEEEeccccccc
Confidence 0011 236666777889999999997554
No 379
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.55 E-value=4.7 Score=49.18 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=69.7
Q ss_pred ceeEEeeecC----CCEEEEEeCCCcEEEEeccc-ccccccceeecccccc-ccccCCCCCCEEEEEEccCCCEEEEEEC
Q 000992 22 ILQFSALDIE----QNRLFFASSANNIYSAQLSS-FQNERASIKTAISAEI-EHIDLEPGDSITAFDYLMEKEALIVGTS 95 (1196)
Q Consensus 22 ~~~~~~~d~~----~~~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~~~~~l-~~~~~~~~~~v~~v~~spd~~~La~as~ 95 (1196)
.+.+++|-+. .-.+..+.-.+.+..|++-. .+....+-+. ..-++ ..+|.+|.+.| |+|....|++-+.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~s-QtcEi~e~~pvLpQGCV----WHPk~~iL~VLT~ 132 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMS-QTCEIREPFPVLPQGCV----WHPKKAILTVLTA 132 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceee-eeeeccCCcccCCCccc----ccCCCceEEEEec
Confidence 5777888765 44667776666688999841 1111111111 11112 23677776665 9999999998776
Q ss_pred CCcEEEEECC--CCeEE--EeeeecCcEEEEEECCCCCEEEEEeCC
Q 000992 96 SGLLLLHSVD--GNATE--VVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 96 dG~I~lw~~~--~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d 137 (1196)
...-.+.+.. +.++. +-+ .|-|.|++|.+||+.|++|-+.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~RLVVAvGS 176 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQRLVVAVGS 176 (671)
T ss_pred CceeEeeeeeeCCceEEEeccC--CceEEEEEecCcCCEEEEEeCC
Confidence 6554556653 34443 322 5679999999999999998765
No 380
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.35 Score=52.29 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=7.8
Q ss_pred hCHHHHHHHHHHcC
Q 000992 945 QRFENALKHIVSMG 958 (1196)
Q Consensus 945 ~ry~~Al~~l~~~g 958 (1196)
.+|++|..+|.+++
T Consensus 28 ~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 28 NKYEEAAELYERAA 41 (288)
T ss_pred cchHHHHHHHHHHH
Confidence 35666666655553
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.46 E-value=0.41 Score=53.56 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=81.9
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCC-eE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEE-EeccCceeee
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGN-AT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILV-MTHDWDLLYE 152 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~-~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l-~~~~~d~~~~ 152 (1196)
+...+|.+-++.-+. .....+.+|..+=. .+ ++.|. ...|.++.||||-++|.+++....-++ ++..++.+..
T Consensus 45 ~f~~a~~k~~~~~~~-~~~r~~~~~l~~y~~~i~akpi~g~-~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGL-DLSRYIARYLLEYRARIDAKPILGE-TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEeccccccc-cccchhhhccCCceEEEeccccccc-cccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 455566666653321 11122445554321 12 24454 556999999999999999988766555 4788999998
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEE------ecc--C-C
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQAS------SEL--K-A 222 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~------~e~--~-~ 222 (1196)
+++.... .--.|.|.++|+|.+ +. ..++++.++..+.+ ..... ++. + .
T Consensus 123 iPL~g~~---------------DpE~Ieyig~n~fvi-~d------ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N 180 (316)
T COG3204 123 IPLTGFS---------------DPETIEYIGGNQFVI-VD------ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKN 180 (316)
T ss_pred ecccccC---------------ChhHeEEecCCEEEE-Ee------hhcceEEEEEEcCCccEEeccceEEeccccCCCC
Confidence 8876432 124699999999877 32 14566666655322 11111 110 1 1
Q ss_pred CceeEEEEcCCCCeEEEEec
Q 000992 223 FMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~ 242 (1196)
..-..+||.|....+-.+..
T Consensus 181 ~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cCceeeecCCCCceEEEEEc
Confidence 12256777777665555443
No 382
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.43 E-value=2.6 Score=46.01 Aligned_cols=190 Identities=18% Similarity=0.155 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e 110 (1196)
+++.+|+++.++.++.||. .+++..|+.. ++..+.. . -..++..+++++.+|.|..+|..+|++.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~--~tG~~~W~~~-~~~~~~~-------~-----~~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDA--KTGKVLWRFD-LPGPISG-------A-----PVVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEET--TTSEEEEEEE-CSSCGGS-------G-----EEEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eCCEEEEEcCCCEEEEEEC--CCCCEEEEee-ccccccc-------e-----eeecccccccccceeeeEecccCCccee
Confidence 6788999989999999999 6777766654 2222111 1 1344566777788888999998777653
Q ss_pred -E-eeee---cCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 111 -V-VGRV---EGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 111 -~-vg~~---~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
. .... .......+...+|+.+++++.++.|..++ ++++.+-...........++. ...+....+.+. +
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~ 173 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS-----SFSDINGSPVIS-D 173 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE-----EETTEEEEEECC-T
T ss_pred eeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee-----eecccccceEEE-C
Confidence 2 1111 01223344444588898888888898887 556666555542211000000 000111233333 5
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
|..++ ++. ..+.+.+ |..+|+.... ....+ ... ...++|..|..++.+ ..|..|++.
T Consensus 174 ~~v~~-~~~------~g~~~~~-d~~tg~~~w~-~~~~~-~~~-~~~~~~~~l~~~~~~------~~l~~~d~~ 230 (238)
T PF13360_consen 174 GRVYV-SSG------DGRVVAV-DLATGEKLWS-KPISG-IYS-LPSVDGGTLYVTSSD------GRLYALDLK 230 (238)
T ss_dssp TEEEE-ECC------TSSEEEE-ETTTTEEEEE-ECSS--ECE-CEECCCTEEEEEETT------TEEEEEETT
T ss_pred CEEEE-EcC------CCeEEEE-ECCCCCEEEE-ecCCC-ccC-CceeeCCEEEEEeCC------CEEEEEECC
Confidence 55555 332 1236777 9989986652 22222 222 145788888877753 468888853
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.39 E-value=0.34 Score=60.38 Aligned_cols=106 Identities=20% Similarity=0.127 Sum_probs=74.4
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHH-HcCCHHHHHHHHhhcCCCHH-HHHHHHHH-HHHHHH
Q 000992 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR-ASGNWSGVLTVAGLLKLGKD-EVAKLAQE-LCEELQ 1061 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~-~~g~w~~al~la~~l~~~~~-~~~~l~~~-la~~L~ 1061 (1196)
..++-+....+=|=-|.++++|+.||-.|..||..+.|++... +.+|.+-|+.+|+.+.-+.. ..+++.++ +-..-.
T Consensus 447 ~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~ 526 (631)
T PF12234_consen 447 TEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAI 526 (631)
T ss_pred CChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhcccc
Confidence 4556666777777889999999999999999999999998666 56889999999988753311 12223221 111112
Q ss_pred HcCChHHHHHHHHHhcCCHHHHHHHHHHhc
Q 000992 1062 ALGKPGEAAKIALDYCGDVTNGISLLIDAR 1091 (1196)
Q Consensus 1062 ~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~ 1091 (1196)
+.|+.=.+.-+|-. +|++++|++.++..-
T Consensus 527 ~~~d~wl~s~~~W~-L~~~~~ai~~Li~~~ 555 (631)
T PF12234_consen 527 KEGDRWLASWAFWM-LGDYDEAIRALISPP 555 (631)
T ss_pred ccCCHHHHHHHHHh-cCCHHHHHHHHhcCc
Confidence 45666666667666 788888887777654
No 384
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.38 E-value=0.32 Score=61.29 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=73.5
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHH----HHhhcC-CCHHHHHH
Q 000992 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLT----VAGLLK-LGKDEVAK 1051 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~----la~~l~-~~~~~~~~ 1051 (1196)
+|..+ ++|..+|+..++++++++|...|.+|=. +-+=...|.+.|+..+|+. +....+ .+=+...+
T Consensus 203 ~p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 203 NPKDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred CCCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 34333 5566666666666666666666655511 1122234444444444432 111111 12244567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC---------CHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCG---------DVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~---------d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
++...+.++...++.+-|+++++.|+. |++-.+++|++.++|+.|++....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 788888888888888889999888754 788999999999999999987654
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.38 E-value=2.7 Score=48.53 Aligned_cols=234 Identities=10% Similarity=0.059 Sum_probs=118.8
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.-.+.+||+++..||.+.- .+.|..|+. ..+... + +. . .+.+.++...-++..|++ ...| +.
T Consensus 26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~--~~g~~~--~------~~----~-p~~~~~~~~~d~~g~Lv~-~~~g-~~ 88 (307)
T COG3386 26 LGEGPVWDPDRGALLWVDILGGRIHRLDP--ETGKKR--V------FP----S-PGGFSSGALIDAGGRLIA-CEHG-VR 88 (307)
T ss_pred cccCccCcCCCCEEEEEeCCCCeEEEecC--CcCceE--E------EE----C-CCCcccceeecCCCeEEE-Eccc-cE
Confidence 3455689999998888854 667999998 433321 1 11 1 123444444444444433 3444 55
Q ss_pred EEECCCCeE-E-E----eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee--eeccccc-CccccccCcccc
Q 000992 101 LHSVDGNAT-E-V----VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE--NPLEELA-EGFDVHEPELSS 171 (1196)
Q Consensus 101 lw~~~~~~~-e-~----vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~--~~l~~~~-~~~~Vs~tqf~~ 171 (1196)
+++.+++.. . + .+.-...-+.+...|||.+-+....... .........+ ..+.+.. ..+.+. .
T Consensus 89 ~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~---~~~~~~~~~G~lyr~~p~g~~~~l~~-----~ 160 (307)
T COG3386 89 LLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFD---LGKSEERPTGSLYRVDPDGGVVRLLD-----D 160 (307)
T ss_pred EEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccc---cCccccCCcceEEEEcCCCCEEEeec-----C
Confidence 667654332 2 1 1222344667888899887665443100 0000111111 0011000 000000 0
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEEE-----EeccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQA-----SSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~~-----~~e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
+-..-..|+|||||+.|- ++- +..+.|.-|+.. +|.... ......|.-..++---+|++-+++-..
T Consensus 161 ~~~~~NGla~SpDg~tly-~aD-----T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~- 233 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLY-VAD-----TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG- 233 (307)
T ss_pred cEEecCceEECCCCCEEE-EEe-----CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC-
Confidence 001226799999998776 442 234566665542 232211 111123443445555666665433332
Q ss_pred CCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEccC
Q 000992 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVRFE 294 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~d~ 294 (1196)
...|..|+++|...+++.++. ..+.+++| .|+.+.|-+.+...
T Consensus 234 ----g~~v~~~~pdG~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 234 ----GGRVVRFNPDGKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ----CceEEEECCCCcEEEEEECCC---CCCccceEeCCCcCEEEEEecCC
Confidence 247999999999888877763 24667777 46667666665543
No 386
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.9 Score=49.55 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=57.5
Q ss_pred cChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH--------------HHHHHHHHHcCCHHH--
Q 000992 974 QLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------------EKAMKAYRASGNWSG-- 1034 (1196)
Q Consensus 974 ~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------------~kAl~~y~~~g~w~~-- 1034 (1196)
.+|.+|---| .+.++.+..+++=.+..+.++.+=-|+..|+.++.. +||...|.++|.-+-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 3444444333 445555555555555666666666666666555432 455566666664211
Q ss_pred -HHHHHhhc--CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHH
Q 000992 1035 -VLTVAGLL--KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALR 1098 (1196)
Q Consensus 1035 -al~la~~l--~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~r 1098 (1196)
|+.-|.++ +..|++--.++.+-+..+++.++-..|-++|-+ +-..|++++.|.||-.
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk-------~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK-------CSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH-------hhhHhhhhHHhhHHHH
Confidence 11111110 123344344555555555555555555444333 3455667777777643
No 387
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=95.30 E-value=1.2 Score=50.56 Aligned_cols=235 Identities=15% Similarity=0.065 Sum_probs=131.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEEC-CCCeE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe--ccCcee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSV-DGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLL 150 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~-~~~~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~--~~~d~~ 150 (1196)
+.|++....|.-+.+.+++.|.++++|-. +.++. . +.-....++.+++++++-..|..+-..|++.-.. .+|+..
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 45677777788888999999999999954 44432 2 3333467899999999999999999999885443 233332
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEEC-CCCcEEEEeccCCCceeEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER-DSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~-~~G~l~~~~e~~~~~v~sla 229 (1196)
+.... +..|...+..+-|+---+.+. +.+.| ..+ .|.- +.|.-+ |...-.+
T Consensus 105 ~~~r~-------------~~~h~~~v~~~if~~~~e~V~-s~~~d------k~~-~~hc~e~~~~l-------g~Y~~~~ 156 (404)
T KOG1409|consen 105 TFLKD-------------YLAHQARVSAIVFSLTHEWVL-STGKD------KQF-AWHCTESGNRL-------GGYNFET 156 (404)
T ss_pred chhhh-------------hhhhhcceeeEEecCCceeEE-Eeccc------cce-EEEeeccCCcc-------cceEeec
Confidence 22111 114556778888888888777 55543 222 3432 112110 0111112
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+--+-..++.....+......++.=++.+++.. +.-..++.+.+..++|-|--.+|-++..|. .|-.|++....-
T Consensus 157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~--i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~---~vi~wdigg~~g 231 (404)
T KOG1409|consen 157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQL--ITTFNGHTGEVTCLKWDPGQRLLFSGASDH---SVIMWDIGGRKG 231 (404)
T ss_pred cCCCCceeeEEEEecccccceEEEEEeecCCce--EEEEcCcccceEEEEEcCCCcEEEeccccC---ceEEEeccCCcc
Confidence 222222222222211101122222234444321 111134567899999999999999999998 899999875331
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
...++.++.+. ....|+.+..++|.....+|.+.
T Consensus 232 -~~~el~gh~~k-V~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 232 -TAYELQGHNDK-VQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred -eeeeeccchhh-hhhhhhhhhheeeeeccCCCeEE
Confidence 22355554322 22223333334444444444443
No 388
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.30 E-value=2.9 Score=54.70 Aligned_cols=157 Identities=12% Similarity=0.042 Sum_probs=94.6
Q ss_pred HHhhCHHHHHHHHHHcCCCc---HHH----HHHHHHHHhcChHHHHhhc-----CCcHH---HHHHHHHHHHHHhcccCH
Q 000992 942 LRLQRFENALKHIVSMGDSY---HAD----CLNLMKKYAQLFPLGLKLI-----TDPAK---MEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g~~~---~~~----ale~~~~~~~ly~~AL~L~-----~d~~~---~~~i~~~~A~~L~~~~~~ 1006 (1196)
.-.|++++|+..|.++-... .+. .-.++... +.+++|+++| .+|.. .......++.-+.+++++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~-g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL-HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 44577888888887764221 111 22355666 7788888876 23221 123344444556788888
Q ss_pred HHHHHHHHhCCCH-----------------------HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 000992 1007 EDAATTYFCCSSL-----------------------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA 1062 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~-----------------------~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~ 1062 (1196)
++|...+..+... .....++...|++++|+.+..+. ...|.. ..+...+|..+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-QGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Confidence 8888887766432 12335677778888888776652 212223 4577788888888
Q ss_pred cCChHHHHHHHHHhcC-CHH------HHHHHHHHhcCHHHHHHHH
Q 000992 1063 LGKPGEAAKIALDYCG-DVT------NGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1063 ~~~~~eAa~i~~~yl~-d~~------~Ai~~y~~~~~w~eA~rla 1100 (1196)
.|++.+|..++.+-+. +++ ....++.+.++|++|..+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888888766222 111 2223566666676665543
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.30 E-value=7.4 Score=44.82 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=99.9
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.++.+ .++..+++.+.+.|+. .. ..++ .|+...++.. +| +....|....++. ..+++..|.|..
T Consensus 64 l~~I~f--~~~~g~ivG~~g~ll~-T~--DgG~-tW~~v~l~~~------lp-gs~~~i~~l~~~~-~~l~~~~G~iy~- 128 (302)
T PF14870_consen 64 LNSISF--DGNEGWIVGEPGLLLH-TT--DGGK-TWERVPLSSK------LP-GSPFGITALGDGS-AELAGDRGAIYR- 128 (302)
T ss_dssp EEEEEE--ETTEEEEEEETTEEEE-ES--STTS-S-EE----TT-------S-S-EEEEEEEETTE-EEEEETT--EEE-
T ss_pred EEEEEe--cCCceEEEcCCceEEE-ec--CCCC-CcEEeecCCC------CC-CCeeEEEEcCCCc-EEEEcCCCcEEE-
Confidence 334444 3566777777664443 22 2222 2443222211 12 3445566666654 444566777643
Q ss_pred ECCCC-eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEE-EEec---cCceeeeeecccccCccccccCccccCCCCe
Q 000992 103 SVDGN-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMTH---DWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 103 ~~~~~-~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~-l~~~---~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
..+++ ..+ ++..-.+.|..+.-+|||+++|+++. |.+. -|+. .|.+... ....++
T Consensus 129 T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~-G~~~~s~~~G~~~w~~~~r------------------~~~~ri 189 (302)
T PF14870_consen 129 TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR-GNFYSSWDPGQTTWQPHNR------------------NSSRRI 189 (302)
T ss_dssp ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT-SSEEEEE-TT-SS-EEEE--------------------SSS-E
T ss_pred eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc-ccEEEEecCCCccceEEcc------------------Ccccee
Confidence 34443 333 23333567999999999998887755 4554 3331 1332211 112467
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEE-CCCCcEEEE-ecc--CCCc-eeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWE-RDSGTLQAS-SEL--KAFM-GAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd-~~~G~l~~~-~e~--~~~~-v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
..+.|+|||.... ++. .+.|+.=+ ...++.-.. ..+ ..+. +-+++|+|++...|+++.. .
T Consensus 190 q~~gf~~~~~lw~-~~~-------Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~ 254 (302)
T PF14870_consen 190 QSMGFSPDGNLWM-LAR-------GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-------T 254 (302)
T ss_dssp EEEEE-TTS-EEE-EET-------TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--------
T ss_pred hhceecCCCCEEE-EeC-------CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-------c
Confidence 8999999999866 442 25666655 212211111 111 2333 6899999999999988752 3
Q ss_pred EEEEeCCCeeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 252 IVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
+..-.-+|..=.. -+ .+-....+.|.|.++.+-+|.+ .++
T Consensus 255 l~~S~DgGktW~~--~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G 296 (302)
T PF14870_consen 255 LLVSTDGGKTWQK--DRVGENVPSNLYRIVFVNPDKGFVLG-QDG 296 (302)
T ss_dssp EEEESSTTSS-EE---GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred EEEeCCCCccceE--CccccCCCCceEEEEEcCCCceEEEC-CCc
Confidence 4332334432111 11 1113457888888776666665 444
No 390
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.11 Score=60.16 Aligned_cols=191 Identities=14% Similarity=0.154 Sum_probs=128.9
Q ss_pred CCCEEEEEECCCcEEEEECCC-CeEEEee---eecCcEEEEEECCCCCEEEEEeC-CceEEEEe-ccCceeeeeeccccc
Q 000992 86 EKEALIVGTSSGLLLLHSVDG-NATEVVG---RVEGGVRFISPSPDGDLLGVTTG-FGQILVMT-HDWDLLYENPLEELA 159 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~-~~~e~vg---~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~-~~~d~~~~~~l~~~~ 159 (1196)
-.+.+.+||-||.++.|.... .-++.+- .|-+-|.+++-|-||-++.++.. |..+++.. .++|.++.+.+...+
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 457888999999999998765 3344333 35567899999999999999877 99998865 557777666665444
Q ss_pred CccccccCccccCCCCeEEEEEc---cCCc-eEEEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcCC
Q 000992 160 EGFDVHEPELSSSFSFKSPISWR---GDGK-YFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 160 ~~~~Vs~tqf~~~~~~v~~isWs---pDG~-~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsPd 233 (1196)
-.+.|- +|-. .+| ++..+ .+.+.|+|...+ +....-.-|...+..+-++|.
T Consensus 99 -----------------g~a~wv~skGd~~s~IA-Vs~~~-----sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 99 -----------------GFAEWVTSKGDKISLIA-VSLFK-----SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred -----------------CceEEecCCCCeeeeEE-eeccc-----CCCcEEECCcCCcCccceecccccCceEEEEeecc
Confidence 122331 2222 455 66543 578899987322 223333457788999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCee---EE--EEEec-------cC-CCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLE---RS--SFDIN-------EQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~--~f~l~-------~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
|..+.|... .+.|.-|...|.. .+ .|.+. .+ .-....++.|||+|..++.-..|. .|+
T Consensus 156 ~Ds~vSiD~------~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr---kVR 226 (558)
T KOG0882|consen 156 GDSAVSIDI------SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR---KVR 226 (558)
T ss_pred ccceeeccc------cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc---EEE
Confidence 998776543 3568888765410 00 01111 00 113466899999999999999998 899
Q ss_pred EEEecCCE
Q 000992 301 ICFFSNNH 308 (1196)
Q Consensus 301 lW~~~n~~ 308 (1196)
++...+..
T Consensus 227 ~F~~KtGk 234 (558)
T KOG0882|consen 227 GFVFKTGK 234 (558)
T ss_pred EEEeccch
Confidence 99887654
No 391
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.24 E-value=0.038 Score=62.75 Aligned_cols=80 Identities=14% Similarity=-0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCCH-------HHHHHHHHHhcCHHHHHHHHHhcCCchhHHH--HHHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCGDV-------TNGISLLIDARDWEEALRVAFMHRREDLITK--VKHASLECASS 1122 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d~-------~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~--v~~~l~e~~~~ 1122 (1196)
+...++-.|...|++.+|.+++..|.... ..-..+|...++.++|+....+.- .. =+|........
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~-----~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL-----KLNPDDPLWLLAYAD 256 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH-----HHSTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc-----ccccccccccccccc
Confidence 44455666666666666555555542211 334455556666677665544311 11 24444455555
Q ss_pred HHHHHHHHHHHHHH
Q 000992 1123 LIGEYKEGLEKVGK 1136 (1196)
Q Consensus 1123 ~~e~l~~~~~~~~~ 1136 (1196)
.++......+...-
T Consensus 257 ~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 257 ALEQAGRKDEALRL 270 (280)
T ss_dssp HHT-----------
T ss_pred cccccccccccccc
Confidence 55555555554443
No 392
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.20 E-value=0.33 Score=56.27 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=78.2
Q ss_pred cCCcchhhHHHHHHhcC-----ChhhhcccHHHHhhCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcChHHHHhhc
Q 000992 915 QRDPKEFLPYLQELESM-----PPLLMRYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI 983 (1196)
Q Consensus 915 q~DpkeYlpfL~~L~~l-----~~~~~r~~Id~~L~ry~~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~ 983 (1196)
+.+-.|-|-|.=+|+.+ +-.+|-+.|...|..-..|+++|.+...- -..+.-+++... +.=.+|.+.+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq~~ 615 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQCH 615 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhhhh
Confidence 34444445555555554 33566667777777777777777766410 012333444444 4555566654
Q ss_pred C-----CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-------H-HHHHHHHHcCCHHHHHHHHhh
Q 000992 984 T-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-------E-KAMKAYRASGNWSGVLTVAGL 1041 (1196)
Q Consensus 984 ~-----d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-------~-kAl~~y~~~g~w~~al~la~~ 1041 (1196)
+ -|-.. +..+-+|.|+-+.+-|++|..+|++|.-. + ....|+++.|+|++|+.+-+.
T Consensus 616 ydsyryfp~ni-e~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 616 YDSYRYFPCNI-ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhcccccCcch-HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2 23222 34556788888999999999999998533 2 344789999999999976654
No 393
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.17 E-value=3.7 Score=47.41 Aligned_cols=145 Identities=13% Similarity=0.126 Sum_probs=75.0
Q ss_pred EEccCCCEEE-EEECCCcEEEEECCCCeEEEeeeecCcEEE-EEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccc
Q 000992 82 DYLMEKEALI-VGTSSGLLLLHSVDGNATEVVGRVEGGVRF-ISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEEL 158 (1196)
Q Consensus 82 ~~spd~~~La-~as~dG~I~lw~~~~~~~e~vg~~~~~I~~-~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~ 158 (1196)
.|.|+...|. +--..+.|.-|++.+++.+.... .+.+.+ +....+|.++++..+ +.++. ..+..++.. ...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~~g---~~~~~~~~~~~~t~~--~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACEHG---VRLLDPDTGGKITLL--AEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEccc---cEEEeccCCceeEEe--ccc
Confidence 4788877554 44566788889998877765554 334444 445555555544333 22222 111111111 111
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeec---c-ccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSE---F-CNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss---~-d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
...+.. ..-....-.|||.+-++..+ . .......+.+...+. .|........+-..-+.|+|||||
T Consensus 105 ~~~~~~---------~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 105 EDGLPL---------NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred cCCCCc---------CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC
Confidence 111111 23345677889987763222 0 111112234545555 566666554432334889999999
Q ss_pred CeEEEEec
Q 000992 235 ANIAAVYD 242 (1196)
Q Consensus 235 ~~IAs~s~ 242 (1196)
+.+-.+-.
T Consensus 175 ~tly~aDT 182 (307)
T COG3386 175 KTLYVADT 182 (307)
T ss_pred CEEEEEeC
Confidence 87776644
No 394
>PRK10115 protease 2; Provisional
Probab=95.15 E-value=3.3 Score=53.29 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=42.1
Q ss_pred CEEEEEEccCCCEEEEEECC-C----cEEEEECCCCe--EEEeeeecCcEEEEEECCCCCEEEEEeCC
Q 000992 77 SITAFDYLMEKEALIVGTSS-G----LLLLHSVDGNA--TEVVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~d-G----~I~lw~~~~~~--~e~vg~~~~~I~~~awSPDg~~LA~~s~d 137 (1196)
.+..+.|||||+.|+.+.+. | +|.+.|..++. .+.+.... ..++|+|||+.|..++.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEec
Confidence 47789999999999876433 3 47888888775 23332221 459999999999988764
No 395
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.89 E-value=0.073 Score=38.51 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=29.2
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
....|...|.+++|+|+++.+++++.|+.+.+|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445678899999999999999999999998873
No 396
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.84 E-value=0.048 Score=67.34 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=96.7
Q ss_pred ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 170 ~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
+.++...++++||++-++|+ +|+. .+.|++++..+|.-......|...+..|-=|-||.+..+.+.-. .
T Consensus 1098 rd~~~~fTc~afs~~~~hL~-vG~~------~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S----~ 1166 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLA-VGSH------AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS----S 1166 (1516)
T ss_pred hccccceeeEEeecCCceEE-eeec------cceEEEEEccCccccccccccccccccccccCCcceeeeecccc----C
Confidence 36778899999999999999 8975 47899999999987776677888888888888999776554432 3
Q ss_pred CeEEEEeCC---CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE---EEEEEEEEecCCcE
Q 000992 250 PSIVFYERN---GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW---YLKYEIRYLRRDGI 323 (1196)
Q Consensus 250 ~~V~~~e~n---Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w---ylkq~l~~~~~~~~ 323 (1196)
....+|+.. |.+|. | ..-..+.||...+.=|.|+... .+.|||+.+.+- |+...+.. +.+..
T Consensus 1167 PlsaLW~~~s~~~~~Hs-f-------~ed~~vkFsn~~q~r~~gt~~d---~a~~YDvqT~~~l~tylt~~~~~-~y~~n 1234 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHS-F-------DEDKAVKFSNSLQFRALGTEAD---DALLYDVQTCSPLQTYLTDTVTS-SYSNN 1234 (1516)
T ss_pred chHHHhccccccCcccc-c-------cccceeehhhhHHHHHhccccc---ceEEEecccCcHHHHhcCcchhh-hhhcc
Confidence 457788743 11221 2 1234688888877777766554 699999987764 22222211 11125
Q ss_pred EEEEccCCC
Q 000992 324 RFMWHPTKP 332 (1196)
Q Consensus 324 ~v~Wsp~~~ 332 (1196)
...|+|...
T Consensus 1235 ~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1235 LAHFSPCDT 1243 (1516)
T ss_pred ccccCCCcc
Confidence 678888775
No 397
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.77 E-value=0.16 Score=62.15 Aligned_cols=147 Identities=16% Similarity=0.095 Sum_probs=89.9
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
|.-=.+...++.||+|++.|-+.|++..+++.. .-| -++.+.....|++..++|.|+..|.|.+... .. .
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql-----~~-~ 108 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQL-----NK-E 108 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehh-----hc-c
Confidence 333445777899999999999999999987653 223 2566778899999999999999888865421 11 1
Q ss_pred cccccCccccccCccc-cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEE---eccCCCceeEEE
Q 000992 155 LEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQAS---SELKAFMGAVLE 229 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~-~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~---~e~~~~~v~sla 229 (1196)
+.+. -..++ .+. .|...|++++|++||..|- +|. ..++|-.-..++ -..... .-..++.|-.|.
T Consensus 109 ~p~~--~~~~t--~~d~~~~~rVTal~Ws~~~~k~y-sGD------~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD 177 (726)
T KOG3621|consen 109 LPRD--LDYVT--PCDKSHKCRVTALEWSKNGMKLY-SGD------SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLD 177 (726)
T ss_pred CCCc--ceeec--cccccCCceEEEEEecccccEEe-ecC------CCceEEEEEechhhhhccccceeeccCcceEEee
Confidence 1111 01111 011 3667899999999999988 553 345655444422 111111 112455566666
Q ss_pred EcCCCCeEEEEec
Q 000992 230 WMPSGANIAAVYD 242 (1196)
Q Consensus 230 wsPdG~~IAs~s~ 242 (1196)
..-.--+|++..+
T Consensus 178 ~~q~~LLVStl~r 190 (726)
T KOG3621|consen 178 YLQSYLLVSTLTR 190 (726)
T ss_pred cccceehHhhhhh
Confidence 6655445555443
No 398
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.73 E-value=0.11 Score=63.36 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=113.7
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCC-ceeEEEEcCCCC---eEEEEecCCCCCC
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAF-MGAVLEWMPSGA---NIAAVYDRKSENK 248 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~-~v~slawsPdG~---~IAs~s~d~~~~~ 248 (1196)
.++..++-+|-|+-+| .++. --+-|-|.+ .+..-.-+...+. .|..+.|||.-. .|++.+..
T Consensus 25 ~~~~a~si~p~grdi~-lAsr-------~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q----- 91 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIV-LASR-------QGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ----- 91 (1081)
T ss_pred Ccccceeeccccchhh-hhhh-------cCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-----
Confidence 3456677778787777 4542 112333432 1221111111111 245677877654 45655543
Q ss_pred CCeEEEEeC--CCeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EE
Q 000992 249 CPSIVFYER--NGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IR 324 (1196)
Q Consensus 249 ~~~V~~~e~--nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~ 324 (1196)
+-.+|+. ...+.-+|.+.++ ...|..+-|+|.- .+||+.+.|. .|..|++...|-+.-..-.. ... ..
T Consensus 92 --kaiiwnlA~ss~~aIef~lhgh-sraitd~n~~~q~pdVlatcsvdt---~vh~wd~rSp~~p~ys~~~w--~s~asq 163 (1081)
T KOG0309|consen 92 --KAIIWNLAKSSSNAIEFVLHGH-SRAITDINFNPQHPDVLATCSVDT---YVHAWDMRSPHRPFYSTSSW--RSAASQ 163 (1081)
T ss_pred --hhhhhhhhcCCccceEEEEecC-ccceeccccCCCCCcceeeccccc---cceeeeccCCCcceeeeecc--cccCce
Confidence 2334552 2223346767654 4569999999976 4899999998 89999998766432111000 011 33
Q ss_pred EEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCC
Q 000992 325 FMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKS 403 (1196)
Q Consensus 325 v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg 403 (1196)
|+|+-..|. +.+.+.|+.+.+|+++.+.. |.|. + .|-+.|+.++|..--
T Consensus 164 Vkwnyk~p~--------------------------vlasshg~~i~vwd~r~gs~--pl~s--~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 164 VKWNYKDPN--------------------------VLASSHGNDIFVWDLRKGST--PLCS--LKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred eeecccCcc--------------------------hhhhccCCceEEEeccCCCc--ceEE--ecccceeeehHHHhhhh
Confidence 444433332 33445667777777776543 3432 2 266677888887654
Q ss_pred CCCEEEEEECCCcEEEEeCCC
Q 000992 404 SKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 404 ~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
. ..+-+.+.||+|++|+.+.
T Consensus 214 ~-s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 214 Y-SEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred h-hhhcccCCCCceeeecccc
Confidence 2 4577778999999999864
No 399
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.64 Score=56.28 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=79.0
Q ss_pred hhCHHHHHHHHHHcCC----Cc--HHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 944 LQRFENALKHIVSMGD----SY--HADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~----~~--~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
+.+|++|++.+..-+. .. |++|-=.+ +. +.-++||+.+ .-...-..+.+.+|+.|+..++|.+|..+|...
T Consensus 59 ~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rl-nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 59 LDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RL-NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred hhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-Hc-ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5667777744443331 01 35553222 23 4566777777 212222558889999999999999999999998
Q ss_pred -CCHHHHHHHHHHcCCHHHHHH----HHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1017 -SSLEKAMKAYRASGNWSGVLT----VAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1017 -g~~~kAl~~y~~~g~w~~al~----la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+..+-.+.-++++.-..+-. +....+.-++..-+++...|-.+.+.|+|.+|.+++..
T Consensus 137 ~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 137 AKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444444432111111 12223333444567888888899999999999998776
No 400
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.56 E-value=0.29 Score=53.02 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=73.5
Q ss_pred ChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC----------CCHHHHHHHHHHcCCHHHHHHHHhh-c
Q 000992 975 LFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC----------SSLEKAMKAYRASGNWSGVLTVAGL-L 1042 (1196)
Q Consensus 975 ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a----------g~~~kAl~~y~~~g~w~~al~la~~-l 1042 (1196)
.|.+||.+- .+ -+|++.||-||..+++|++|-..|++| +-++.+--|..++|+...|...-++ +
T Consensus 91 ~YrkAlsl~p~~----GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 91 SYRKALSLAPNN----GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred HHHHHHhcCCCc----cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 377788877 32 358899999999999999999999987 4567778888888886666643332 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC
Q 000992 1043 KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 1079 (1196)
Q Consensus 1043 ~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d 1079 (1196)
..++.. ..-..++|..+.+.|+|.+|-..+.+|.+-
T Consensus 167 ~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 167 ELDPQF-PPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HhCcCC-ChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 222221 234567888888999999998888887543
No 401
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.54 E-value=5 Score=53.61 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=97.8
Q ss_pred cHHHHhhCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHH
Q 000992 939 TIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFE 1007 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~ 1007 (1196)
.+....|+|++|+.++.++... ++..+ ....+. +.++.|++++ .+|.. ..+...++..+...++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la-~all~~-Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAA-NTAQAA-GNGAARDRWLQQAEQRGLGD-NALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHH-HHHHHC-CCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhCCCHH
Confidence 3444689999999999866421 11111 223445 7777777776 23332 233334455555668899
Q ss_pred HHHHHHHhCCC-------HHHHHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-
Q 000992 1008 DAATTYFCCSS-------LEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG- 1078 (1196)
Q Consensus 1008 eAa~~y~~ag~-------~~kAl~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~- 1078 (1196)
+|..+|.++-. +-....++.+.|++++|+....+ +..+++.. .....++..|...|++++|..+|.+-+.
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-NYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99888877642 12223566677788887754443 22233333 4677888888899999999888877432
Q ss_pred ---CH---HHHHHHHHHhcCHHHHHHHHH
Q 000992 1079 ---DV---TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1079 ---d~---~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
++ .....+|.+.+++++|.....
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 21 334456677777888776443
No 402
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.33 Score=56.51 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=108.4
Q ss_pred EEECCCcEEEEECCCCeE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc---eeeeeecccccCccccc
Q 000992 92 VGTSSGLLLLHSVDGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD---LLYENPLEELAEGFDVH 165 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d---~~~~~~l~~~~~~~~Vs 165 (1196)
+...+|.|.++|..+.-+ -..+-|..+|.++..+|-|....+....|.|.-|+...+ |-....+....+...+
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy- 195 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY- 195 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh-
Confidence 345789999999876443 367778899999999999999999998999999875420 0111111000000000
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
-|.-......++.++|||..+++.+ .|++||+++..+|.+....+..........=||-|-.
T Consensus 196 --~f~K~Kt~pts~Efsp~g~qistl~-------~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~--------- 257 (558)
T KOG0882|consen 196 --GFPKAKTEPTSFEFSPDGAQISTLN-------PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM--------- 257 (558)
T ss_pred --cccccccCccceEEccccCcccccC-------cccEEEEEEeccchhhhhhhccchhhhhccccccccc---------
Confidence 0001112347899999999998543 4799999999899888765433221111111121110
Q ss_pred CCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 246 ENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|. |-|.-.... .+..++...-..+.|...|.+|.-++--+ |++.++.+..
T Consensus 258 -----~Ve-lgRRmaver--elek~~~~~~~~~~fdes~~flly~t~~g----ikvin~~tn~ 308 (558)
T KOG0882|consen 258 -----HVE-LGRRMAVER--ELEKHGSTVGTNAVFDESGNFLLYGTILG----IKVINLDTNT 308 (558)
T ss_pred -----eee-hhhhhhHHh--hHhhhcCcccceeEEcCCCCEEEeeccee----EEEEEeecCe
Confidence 011 100000000 01111112234678889999999888877 8888877653
No 403
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=94.42 E-value=0.17 Score=57.04 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=82.3
Q ss_pred CCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC-----eEEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEec
Q 000992 72 LEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-----ATEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 72 ~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-----~~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~ 145 (1196)
|...+.|.+.+|.-.+..+.-|-.+|.|..+|+..+ ..-..=.|+..|+++..=. +++.|...+-+|+|++|+.
T Consensus 249 f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 249 FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 334567899999998999999999999999998653 1223334688899988766 7788888889999999863
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
-... ....+.+- ..||++.. -.-+--.+.-..+++++ .|+-.|||....|.++.+..
T Consensus 329 R~~K-~~~~V~qY--eGHvN~~a-------~l~~~v~~eeg~I~s~G-------dDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 329 RATK-CKKSVMQY--EGHVNLSA-------YLPAHVKEEEGSIFSVG-------DDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhh-cccceeee--eccccccc-------ccccccccccceEEEcc-------CeeEEEEEecccCceeeccC
Confidence 2111 10111111 12222000 00011122222344132 57999999999999998754
No 404
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.40 E-value=2.8 Score=47.61 Aligned_cols=135 Identities=16% Similarity=0.243 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC-H-------HHHHHHHHHcCCHHHHHHHHhhc-CCCH----HHHHHHH
Q 000992 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSS-L-------EKAMKAYRASGNWSGVLTVAGLL-KLGK----DEVAKLA 1053 (1196)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~-~-------~kAl~~y~~~g~w~~al~la~~l-~~~~----~~~~~l~ 1053 (1196)
++..-.....|+-++..|-++.|..+|..+-+ . +.-+..|....+|++|+.+|.++ .+++ -++...+
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 45556677889999999999999999999866 3 33457788888999999999864 1222 2445566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcCCHHHHH-------HHHHHhcCHHHHHHHH---HhcCCchhHHHHHHHHHHHHHH
Q 000992 1054 QELCEELQALGKPGEAAKIALDYCGDVTNGI-------SLLIDARDWEEALRVA---FMHRREDLITKVKHASLECASS 1122 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai-------~~y~~~~~w~eA~rla---~~~~~~dL~e~v~~~l~e~~~~ 1122 (1196)
-++|.......++..|-.++.+-+.--+..+ +++..-++|..|++.- .+++ ++.+..|.+.|.+++.+
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 6777777777777777666655332111111 2344455666665432 2333 67766666777666544
No 405
>PRK12370 invasion protein regulator; Provisional
Probab=94.35 E-value=0.87 Score=57.15 Aligned_cols=110 Identities=10% Similarity=-0.090 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhCC----CHHH----HHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHH
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCCS----SLEK----AMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQA 1062 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag----~~~k----Al~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~ 1062 (1196)
.+..+|.-+..++++++|...|+++= +... .-.+|...|++++|+....+ +.+++.... ....++..+..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~ 418 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHh
Confidence 34455666667777777777776642 1111 12455666777777755443 122222211 11222333444
Q ss_pred cCChHHHHHHHHHhcC-----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 000992 1063 LGKPGEAAKIALDYCG-----DVT---NGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1063 ~~~~~eAa~i~~~yl~-----d~~---~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.|+|++|...+.+.+. ++. ....+|...+++++|.....+
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6777777777766431 111 133455567777777776544
No 406
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=0.53 Score=50.99 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHhcCCHHHHHHHHHHhcCH
Q 000992 1064 GKPGEAAKIALDYCGDVTNGISLLIDARDW 1093 (1196)
Q Consensus 1064 ~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w 1093 (1196)
+.|.+=|++|+.=+.|++.||..|-.+..|
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333344555555466777777777766666
No 407
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.33 E-value=0.72 Score=55.37 Aligned_cols=106 Identities=11% Similarity=-0.023 Sum_probs=63.8
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
..++.+...-|+|++|.+.+.+.... ++-.+-++.... +.++.|.+.+ .+|+......-..|+....+
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~-g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQR-GDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 34455665568888888887765321 112223333556 7777777776 23332222222337777888
Q ss_pred cCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhh
Q 000992 1004 KCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGL 1041 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~ 1041 (1196)
+++++|...+++.-+. .-..++|.+.|+|++|+.+...
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888877776321 3455778888888888854443
No 408
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.39 Score=56.49 Aligned_cols=105 Identities=12% Similarity=-0.005 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHhC---------------------CCHHHHHHHHHHcCC-----HHHHHHHHhh-
Q 000992 989 MEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGN-----WSGVLTVAGL- 1041 (1196)
Q Consensus 989 ~~~i~~~~A~~L~~~~~~~eAa~~y~~a---------------------g~~~kAl~~y~~~g~-----w~~al~la~~- 1041 (1196)
..+-|...|.|+.-+++++.|.++|.+| ++...|+++|++|-+ +|.=..+.+.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 3356778899999999999999999887 455888999887742 2221222111
Q ss_pred --cCCCHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHH
Q 000992 1042 --LKLGKDEVAKLAQELCEELQ--ALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEA 1096 (1196)
Q Consensus 1042 --l~~~~~~~~~l~~~la~~L~--~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA 1096 (1196)
++|.- -.-.+-+-|..|. ..+....-+++|.+ ++..++||.||-++-...++
T Consensus 409 eim~Mh~--YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 409 EIMKMHF--YALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHhcchH--HHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhcccc
Confidence 11110 0011222233332 12335566888888 99999999999887666655
No 409
>PRK10115 protease 2; Provisional
Probab=94.19 E-value=7.8 Score=49.99 Aligned_cols=120 Identities=11% Similarity=0.032 Sum_probs=64.6
Q ss_pred cEEEEEECCCCCEEEEEeCC---ceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc
Q 000992 118 GVRFISPSPDGDLLGVTTGF---GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d---~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~ 194 (1196)
.+..+.|||||++||.+... ..-.++-++.+ ++..+. ..+ ++....++|++||+.|. .+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~--tg~~l~-----~~i--------~~~~~~~~w~~D~~~~~-y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE--TGNWYP-----ELL--------DNVEPSFVWANDSWTFY-YVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC--CCCCCC-----ccc--------cCcceEEEEeeCCCEEE-EEEe
Confidence 46778999999999998432 22222212211 111110 001 11125699999999887 4543
Q ss_pred ccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEe
Q 000992 195 CNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 195 d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+........|..+++.++ +-...++..++...-..|.+ ||+++...+.... ...+.++.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~---~~~~~l~~ 253 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT---TSEVLLLD 253 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc---cccEEEEE
Confidence 321012356778888777 33334444444434344555 8887655444322 34566666
No 410
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.18 E-value=0.049 Score=67.28 Aligned_cols=182 Identities=13% Similarity=0.141 Sum_probs=117.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCce-EEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQ-ILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~t-V~l~~~~~d~~~~~ 153 (1196)
..-++++||.+.+.|++|+-.|.|+++|..+|..+ .+..|...|+-+.=|-||.++.+.+.-.. + +..|+.-...
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl---saLW~~~s~~ 1178 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL---SALWDASSTG 1178 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch---HHHhcccccc
Confidence 46789999999999999999999999999998765 66678899999999999998877654322 1 1234432211
Q ss_pred -ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCC---ceeEE
Q 000992 154 -PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAF---MGAVL 228 (1196)
Q Consensus 154 -~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~---~v~sl 228 (1196)
..|+. +.-.++.|+.--++-| +|+ .....-|||.+||..+.+ +.+..+ .-+..
T Consensus 1179 ~~~Hsf---------------~ed~~vkFsn~~q~r~-~gt------~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1179 GPRHSF---------------DEDKAVKFSNSLQFRA-LGT------EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred Cccccc---------------cccceeehhhhHHHHH-hcc------cccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 11111 1224566766655555 554 235678999999876665 333322 23667
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe--eE--EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ER--SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl--~~--~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.|||+-.+|.- +=++|+..-. .| .+|+..+ .=.|.|.|..+.+-+ .|||+
T Consensus 1237 ~FsP~D~LIln-----------dGvLWDvR~~~aIh~FD~ft~~~-------~G~FHP~g~eVIINS--------EIwD~ 1290 (1516)
T KOG1832|consen 1237 HFSPCDTLILN-----------DGVLWDVRIPEAIHRFDQFTDYG-------GGGFHPSGNEVIINS--------EIWDM 1290 (1516)
T ss_pred ccCCCcceEee-----------CceeeeeccHHHHhhhhhheecc-------cccccCCCceEEeec--------hhhhh
Confidence 89999888752 1236764211 01 1122111 124889998877643 47998
Q ss_pred cCCE
Q 000992 305 SNNH 308 (1196)
Q Consensus 305 ~n~~ 308 (1196)
.++|
T Consensus 1291 RTF~ 1294 (1516)
T KOG1832|consen 1291 RTFK 1294 (1516)
T ss_pred HHHH
Confidence 8876
No 411
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.54 Score=59.32 Aligned_cols=145 Identities=24% Similarity=0.252 Sum_probs=86.3
Q ss_pred HHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-------------HHHHHHHHHcC-----
Q 000992 970 KKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-------------EKAMKAYRASG----- 1030 (1196)
Q Consensus 970 ~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-------------~kAl~~y~~~g----- 1030 (1196)
-+. +.|++||+++ ..|+.+..++..+||++...++|..||.+|...-.+ ++++..|..-+
T Consensus 369 Ld~-g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt 447 (911)
T KOG2034|consen 369 LDK-GEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKFLEINQERALRTFLDKKLDRLT 447 (911)
T ss_pred Hhc-chHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 444 6677777777 566777788888888888888888888877655322 23555444322
Q ss_pred CHHHH-----------HHHHhh--cC-CCHHH-------HHHH----------------HHHHHHHHHHcCChHHHHHHH
Q 000992 1031 NWSGV-----------LTVAGL--LK-LGKDE-------VAKL----------------AQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1031 ~w~~a-----------l~la~~--l~-~~~~~-------~~~l----------------~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
.|++. +.+.+. +. .+++- .... .+.+-+.+.+.|+..++..+-
T Consensus 448 ~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA 527 (911)
T KOG2034|consen 448 PEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFA 527 (911)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHH
Confidence 01111 111110 00 01110 0011 111223345677777777664
Q ss_pred HHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHH
Q 000992 1074 LDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHAS 1116 (1196)
Q Consensus 1074 ~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~v~~~l 1116 (1196)
-- .+|++.-|..+|+.++|++|+.+...+..++|.=...|.|
T Consensus 528 ~l-~~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~L 569 (911)
T KOG2034|consen 528 NL-IKDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPEL 569 (911)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHH
Confidence 44 7999999999999999999999887776666653344544
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.04 E-value=0.12 Score=42.09 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=27.9
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d 148 (1196)
...|.+++|||...+||+++.+|.|.+.-.+|.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 356999999999999999999999988654444
No 413
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.94 E-value=0.44 Score=57.42 Aligned_cols=100 Identities=7% Similarity=-0.023 Sum_probs=48.9
Q ss_pred CCcchhhHHHHHHhcC-Ch----hhhcccHHHHhhCHHHHHHHHHHcC----CCc--HHH-HHHHHHHHhcChHHHHhhc
Q 000992 916 RDPKEFLPYLQELESM-PP----LLMRYTIDLRLQRFENALKHIVSMG----DSY--HAD-CLNLMKKYAQLFPLGLKLI 983 (1196)
Q Consensus 916 ~DpkeYlpfL~~L~~l-~~----~~~r~~Id~~L~ry~~Al~~l~~~g----~~~--~~~-ale~~~~~~~ly~~AL~L~ 983 (1196)
.|+..=...+.+..+. |. .+..+++....|++++|.++|.++- ... ... .-++.... +.|+.|++.+
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l 176 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-NELHAARHGV 176 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 4554434444444443 21 1333455555566666666666531 111 111 12333445 6666666555
Q ss_pred -----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC
Q 000992 984 -----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017 (1196)
Q Consensus 984 -----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag 1017 (1196)
..|+ ...++..++.-+...++|++|..++...-
T Consensus 177 ~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 177 DKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2232 23456666666666666666665555443
No 414
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.55 E-value=0.17 Score=41.23 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA 108 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~ 108 (1196)
..|..++|+|..+.||+++.+|.|.++..+..+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 469999999999999999999999999986543
No 415
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.51 E-value=0.89 Score=46.88 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 000992 1066 PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKE 1129 (1196)
Q Consensus 1066 ~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~v~~~l~e~~~~~~e~l~~ 1129 (1196)
|.-|+.+|+. +|+++.|.+.+ +.|+..|..++ + ...+.+.++..++.|.|
T Consensus 106 ~~~ag~c~L~-lG~~~~A~~aF------~~Ai~~~~~~~--~-----~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 106 PWAAAECYLA-CDNVCYAIKAL------KAVVRICGEVS--E-----HQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHHHHHHH-cCCHHHHHHHH------HHHHHHhccCh--h-----HHHHHHHHHHHHHHhhc
Confidence 4457888888 89999888775 45566564333 1 33455556666555544
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.41 E-value=2.1 Score=50.87 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=80.0
Q ss_pred CCEEEEEEccCCCEEEEEE-----------CCC-cEEEEECC-C-Ce---EEEeeeecCcEEEEEECCCCCEEEEEeCCc
Q 000992 76 DSITAFDYLMEKEALIVGT-----------SSG-LLLLHSVD-G-NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFG 138 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as-----------~dG-~I~lw~~~-~-~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~ 138 (1196)
..++.|+|.++|+..++-. ..| .|.+++.. + ++ .+++..--.....++|.||| ++++ .. .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~-~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TP-P 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CC-C
Confidence 4789999999999887643 234 78777642 2 33 23322212345889999999 5443 33 3
Q ss_pred eEEEE-eccCceee----eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc------c-c-----CCC
Q 000992 139 QILVM-THDWDLLY----ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN------S-S-----KLH 201 (1196)
Q Consensus 139 tV~l~-~~~~d~~~----~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~------~-~-----~~d 201 (1196)
.|..+ ..+.+-.. +.-+.... ..-..+......+.|.|||.+.++.++... . . ...
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~-------~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFG-------GQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccC-------CCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 45433 33332111 11111000 000001233568999999997764553100 0 0 011
Q ss_pred CEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 202 KRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 202 ~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
+.|.-++++++++.....++.. ...++|+|+|+++++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rn-p~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQN-PYGHSVDSWGDVFFC 200 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCC-CccceECCCCCEEEE
Confidence 3455567744444433333332 267889999988765
No 417
>PRK12370 invasion protein regulator; Provisional
Probab=93.41 E-value=1.7 Score=54.62 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=64.2
Q ss_pred cChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC-----C----HHHHHHHHHHcCCHHHHHHHH
Q 000992 974 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS-----S----LEKAMKAYRASGNWSGVLTVA 1039 (1196)
Q Consensus 974 ~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag-----~----~~kAl~~y~~~g~w~~al~la 1039 (1196)
+.|++|++.| .+|... ..+..+|.-+...|++++|...|+++- + +..+ .++...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~-~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISA-DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL-WITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH-HHHHhccCHHHHHHHH
Confidence 4455555554 233322 345667888888899999999998872 1 1222 2355577888888776
Q ss_pred hhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1040 GLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1040 ~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
.+.- ..+.........+|..+...|++++|...+.+...
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 5431 00011123455678888889999999998887543
No 418
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.31 E-value=7.3 Score=44.46 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCC--CcH----HHHHHHHHHHhcChHHHH
Q 000992 907 AAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGD--SYH----ADCLNLMKKYAQLFPLGL 980 (1196)
Q Consensus 907 al~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~--~~~----~~ale~~~~~~~ly~~AL 980 (1196)
|+.|=|.--.-|. ++|=|++..+-+.-|.|.. -|=|+.|...|...-+ +.. ...+..+..- +.|++|+
T Consensus 88 AIRiHQ~L~~spd--lT~~qr~lAl~qL~~Dym~---aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAI 161 (389)
T COG2956 88 AIRIHQTLLESPD--LTFEQRLLALQQLGRDYMA---AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAI 161 (389)
T ss_pred HHHHHHHHhcCCC--CchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHH
Confidence 3444444434554 6777777766555555554 3668888888876643 222 3346677888 9999999
Q ss_pred hhc-----CCc----HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-HHHH-------HHHHHcCCHHHHHHHHh-hc
Q 000992 981 KLI-----TDP----AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-EKAM-------KAYRASGNWSGVLTVAG-LL 1042 (1196)
Q Consensus 981 ~L~-----~d~----~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-~kAl-------~~y~~~g~w~~al~la~-~l 1042 (1196)
+.. -++ -+...++.++|+.+....+.+.|.....+|-.- .+.+ +.+...|+++.|+..-. .+
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 876 222 356788999999999999999987776655111 1111 23333445555553221 12
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1043 KLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1043 ~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
.-+++=+.+++..|.+.....|+.++....+.++
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2245555666777777777777877777776664
No 419
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.22 E-value=0.12 Score=47.27 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1024 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1024 ~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.||.+.|+|++|+.+..+.+.++.. ......+|..+.+.|+|++|..+|.+
T Consensus 33 ~~~~~~~~y~~A~~~~~~~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELLQKLKLDPSN-PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTTHHHHHHHHHHCHTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 5566666666666666443222222 23444557777777777777777655
No 420
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.21 E-value=4.1 Score=47.56 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=60.3
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-c--------------CCCceeEEEEcCCCC-eEEEEe
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L--------------KAFMGAVLEWMPSGA-NIAAVY 241 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~--------------~~~~v~slawsPdG~-~IAs~s 241 (1196)
+|++.+||.+++ +.-.+........|+.++. .|+....+. | ...-..+++++|||+ +++..+
T Consensus 89 gi~~~~~g~~~i-s~E~~~~~~~~p~I~~~~~-~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWI-SSEGGRTGGIPPRIRRFDL-DGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEE-EeCCccCCCCCCEEEEECC-CCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 466678888777 3311000001156777787 577755441 1 122347999999999 444443
Q ss_pred cCCCCCC-------CCeEEEEeCC----CeeEEEEEeccC------CCCcEEEEEEccCCCeeEE
Q 000992 242 DRKSENK-------CPSIVFYERN----GLERSSFDINEQ------IDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 242 ~d~~~~~-------~~~V~~~e~n----Gl~~~~f~l~~~------~~~~V~~laWSpDg~~LAs 289 (1196)
.--.++. ...++++.-+ |....+|..+.. ....|.++.|=||+++|+.
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 3211111 1125555432 433556665532 3457889999999986654
No 421
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.11 E-value=24 Score=43.81 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HHHHHHHHHHhcCHHHHHHHHHhcCCc
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCGD--------VTNGISLLIDARDWEEALRVAFMHRRE 1106 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------~~~Ai~~y~~~~~w~eA~rla~~~~~~ 1106 (1196)
+++..-|..|...|++.+|++.+.. +.. -..++..+.++++.++|..++....+.
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~-Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDE-ARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-HHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 4555566666666666666665443 321 134556666666666666666655443
No 422
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.10 E-value=0.037 Score=66.58 Aligned_cols=193 Identities=12% Similarity=0.122 Sum_probs=116.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC--CCCEEEEEEcc-CCCEEEEEE----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP--GDSITAFDYLM-EKEALIVGT---- 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~~v~~sp-d~~~La~as---- 94 (1196)
.|++.-++.+..++..++.++.|-.-.. -.+.. .++.+.| ...-++++|.+ |.+.||.|.
T Consensus 60 kcva~~y~~d~cIlavG~atG~I~l~s~--r~~hd-----------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 60 KCVASFYGNDRCILAVGSATGNISLLSV--RHPHD-----------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred eeehhhcCCchhhhhhccccCceEEeec--CCccc-----------ccceecccccccccccccccccHHHHHhhhhhhc
Confidence 5777778888888888888887766555 22111 1122233 24568889977 567888774
Q ss_pred CCCcEEEEECCCCe------EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCc
Q 000992 95 SSGLLLLHSVDGNA------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~------~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
.|-.+.|||..++. ....++...+..+++|--|.++|.+|.....+.+.+--|...+...+. .+
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk------ 196 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TK------ 196 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hh------
Confidence 34568999998751 122333456788999999999888888777776543223222211111 11
Q ss_pred cccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECC-C-CcEEEEe----ccCCCceeEEEEcCCCC-eEEEE
Q 000992 169 LSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-S-GTLQASS----ELKAFMGAVLEWMPSGA-NIAAV 240 (1196)
Q Consensus 169 f~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~-~-G~l~~~~----e~~~~~v~slawsPdG~-~IAs~ 240 (1196)
.+..+.-.| .+.||+ ..+ |+.|-+||.. . -.+..+. .+.......++|+|-.. ++|+.
T Consensus 197 ------~vqG~tVdp~~~nY~c-s~~-------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 197 ------YVQGITVDPFSPNYFC-SNS-------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred ------hcccceecCCCCCcee-ccc-------cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence 123455555 667888 343 5789999941 1 1111111 11222468999999654 67888
Q ss_pred ecCCCCCCCCeEEEEe
Q 000992 241 YDRKSENKCPSIVFYE 256 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e 256 (1196)
+++ ..+|++++
T Consensus 263 ~Rd-----S~tIrlyd 273 (783)
T KOG1008|consen 263 SRD-----SITIRLYD 273 (783)
T ss_pred ccC-----cceEEEec
Confidence 887 35787776
No 423
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.08 E-value=3.5 Score=53.92 Aligned_cols=184 Identities=15% Similarity=0.085 Sum_probs=107.6
Q ss_pred CCcchhhHHHHHHhcCChhhhcc-----cHHHHhhCHHHHHHHHHHcCCC----cHHHH--HHHHHHHhcChHHHHhhc-
Q 000992 916 RDPKEFLPYLQELESMPPLLMRY-----TIDLRLQRFENALKHIVSMGDS----YHADC--LNLMKKYAQLFPLGLKLI- 983 (1196)
Q Consensus 916 ~DpkeYlpfL~~L~~l~~~~~r~-----~Id~~L~ry~~Al~~l~~~g~~----~~~~a--le~~~~~~~ly~~AL~L~- 983 (1196)
.|..+-+..|+++-+..+.-... .+...+|++++|+.++.++-.. ..... -..+... +.|++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 44444455555555554433222 5555679999999999998531 11222 1255677 8899999988
Q ss_pred ----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHH-----HHHHHH--cCCHHHHHHHHhhc-CCCHHHHHH
Q 000992 984 ----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKA-----MKAYRA--SGNWSGVLTVAGLL-KLGKDEVAK 1051 (1196)
Q Consensus 984 ----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kA-----l~~y~~--~g~w~~al~la~~l-~~~~~~~~~ 1051 (1196)
.+|+. ..++...|.-+...+++++|...+.++...... ...|.. .++..+|+...+++ ...|++ .+
T Consensus 127 kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n-~e 204 (822)
T PRK14574 127 SSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS-EE 204 (822)
T ss_pred HHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC-HH
Confidence 46655 344445577777788888888888887432111 123333 23333355443332 112222 35
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
++.++...|...|-..-|.++..+|=+-+...-..-++...-.+-+|.+..
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 677778888888888888888776544344444444555555555655543
No 424
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.01 E-value=7 Score=44.08 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=98.1
Q ss_pred ceeEEeeecCCCEEEEEeCC-CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSA-NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++|++++++||++.+. ..|++.+. .++. +.++| |.+ -...-+|.|.-+|++.++-=.++++.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~---~Gdl---irtiP--L~g-----~~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTK---EGDL---IRTIP--LTG-----FSDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEec---CCce---EEEec--ccc-----cCChhHeEEecCCEEEEEehhcceEE
Confidence 68899999999999999764 46777655 3333 33333 222 23456789999988877777778777
Q ss_pred EEEC--CCCeE-----E-Eeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce-eeeeeccccc-CccccccC
Q 000992 101 LHSV--DGNAT-----E-VVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL-LYENPLEELA-EGFDVHEP 167 (1196)
Q Consensus 101 lw~~--~~~~~-----e-~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~-~~~~~l~~~~-~~~~Vs~t 167 (1196)
+... ++..+ + .+|. -..|-..+||+|+++.|..+-+-+-+.+......+ .-........ ...
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~----- 228 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR----- 228 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc-----
Confidence 7544 33221 1 1121 14678899999999999999877666554221111 0000100000 000
Q ss_pred ccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEE
Q 000992 168 ELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS 217 (1196)
Q Consensus 168 qf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~ 217 (1196)
+|.- ..+.++.|.+. |..++ .|- +.|.+---|+ +|+....
T Consensus 229 ~~f~--~DvSgl~~~~~~~~LLV-LS~------ESr~l~Evd~-~G~~~~~ 269 (316)
T COG3204 229 DLFV--LDVSGLEFNAITNSLLV-LSD------ESRRLLEVDL-SGEVIEL 269 (316)
T ss_pred ceEe--eccccceecCCCCcEEE-Eec------CCceEEEEec-CCCeeee
Confidence 0000 23466777754 44555 442 4577777788 7775443
No 425
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.96 E-value=0.8 Score=40.92 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|...|++++|+++| ++|+.+.+.++-+..++......+|..+...|++++|.+.+.+
T Consensus 12 a~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 12 ARVYRELGRYDEALDYY------EKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHTT-HHHHHHHH------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555556666666665 3455554444422234455677788888888888888777665
No 426
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=92.89 E-value=1.3 Score=55.83 Aligned_cols=187 Identities=13% Similarity=0.093 Sum_probs=109.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCc
Q 000992 86 EKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEG 161 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~ 161 (1196)
++..+..|+-...+.-+|..+.+.. .++ .++|.-|+- +++.|-.|...|+|.+-+ +.+.++.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------- 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------- 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc--CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-------
Confidence 3466777776667777888875432 333 346777776 478999999999998854 3455554443
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccc--cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEE
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS--SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIA 238 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~--~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IA 238 (1196)
.|.+.+. .|.=.|+.|+|+|..... -.-|+-|+|||...-+.+.-..-+-+. .-+.|.|.-. .+|
T Consensus 215 ---------aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 215 ---------AHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLA 282 (1118)
T ss_pred ---------cccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEE
Confidence 3334343 355567888866641100 013556999998443322211111111 4566777643 344
Q ss_pred EEecCCCCCCCCeEEEEeCCCee---EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 239 AVYDRKSENKCPSIVFYERNGLE---RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.++.- ....|-+..++. -+.+-. .+....+.++.+|++|+.||.+..++ .|.+|.-.
T Consensus 283 V~S~s------Gq~q~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g---~v~~wa~~ 342 (1118)
T KOG1275|consen 283 VTSQS------GQFQFVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEG---HVNLWADR 342 (1118)
T ss_pred EEecc------cceeeccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccC---cEeeecCC
Confidence 44432 235555533221 111111 12334589999999999999999998 89999843
No 427
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.87 E-value=2 Score=49.92 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HhhCHHHHHHH---------------------------HHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcHHHHHH
Q 000992 943 RLQRFENALKH---------------------------IVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQV 992 (1196)
Q Consensus 943 ~L~ry~~Al~~---------------------------l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~~~~~i 992 (1196)
|||.|++|++. |.=.|. |++|+....+| |.+. +|.--.-..
T Consensus 67 yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~--fdeA~~cc~rh-------Ld~areLgDrv~e~RA 137 (639)
T KOG1130|consen 67 YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA--FDEALTCCFRH-------LDFARELGDRVLESRA 137 (639)
T ss_pred hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc--cchHHHHHHHH-------hHHHHHHhHHHhhhHH
Q ss_pred HHHHHHHHhcccC--------------------HHHHHHHHHhCCCHHHHH--------------HHHHHcCCHHHHHHH
Q 000992 993 LEAWADHLSDVKC--------------------FEDAATTYFCCSSLEKAM--------------KAYRASGNWSGVLTV 1038 (1196)
Q Consensus 993 ~~~~A~~L~~~~~--------------------~~eAa~~y~~ag~~~kAl--------------~~y~~~g~w~~al~l 1038 (1196)
+-.+|.-+..+++ ++.|+.+|+.--....++ ..|.-.|+++.|+.
T Consensus 138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~- 216 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH- 216 (639)
T ss_pred HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH-
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHH
Q 000992 1039 AGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASL 1117 (1196)
Q Consensus 1039 a~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~ 1117 (1196)
..+..-+++.+.++.-.+.+-|.--+.++.- +|+++.|++.|.+ ++.||.... +. |.....
T Consensus 217 ------~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~------tl~LAielg-----~r~vEAQsc 278 (639)
T KOG1130|consen 217 ------FHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKL------TLNLAIELG-----NRTVEAQSC 278 (639)
T ss_pred ------HHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHH------HHHHHHHhc-----chhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1118 ECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146 (1196)
Q Consensus 1118 e~~~~~~e~l~~~~~~~~~~~~Rl~~lR~ 1146 (1196)
=..+..+..++|....+.-|.+-|+.-|+
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.70 E-value=2.8 Score=50.35 Aligned_cols=158 Identities=12% Similarity=0.015 Sum_probs=75.7
Q ss_pred HHhhCHHHHHHHHHHcCCCcH--H-----HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 942 LRLQRFENALKHIVSMGDSYH--A-----DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g~~~~--~-----~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
...|++++|.++|.++.+... . .+-++.... +.|+.|++.+ .+|+ ...+....++-+...++|++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHH
Confidence 445666666666655432100 1 112344555 6666666655 2222 234444555555566666666
Q ss_pred HHHHHhCCCH-----HHHH----HHH-------HHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 1010 ATTYFCCSSL-----EKAM----KAY-------RASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1010 a~~y~~ag~~-----~kAl----~~y-------~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
..++.+..+. +.+- .+| ....+.+.+..+...++....+..++...+|..+...|++.+|..++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6555554321 1000 111 11112222233222221000011345666778888888888888887
Q ss_pred HHhcCC--HHHHHHHHH--HhcCHHHHHHHHH
Q 000992 1074 LDYCGD--VTNGISLLI--DARDWEEALRVAF 1101 (1196)
Q Consensus 1074 ~~yl~d--~~~Ai~~y~--~~~~w~eA~rla~ 1101 (1196)
.+-++. -+..+.+|. ..++.++|+..++
T Consensus 287 ~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 287 LDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 765431 233333443 4477777776664
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.63 E-value=2.5 Score=49.39 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=39.5
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCe---EEEe----eeecCcEEEEEECCC----CCEEEEEe
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVV----GRVEGGVRFISPSPD----GDLLGVTT 135 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~e~v----g~~~~~I~~~awSPD----g~~LA~~s 135 (1196)
.+++|+|.|||+.++ +...|+|.+++.++.. +..+ ..-+.+...+++.|+ +.+-++-+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 589999999998876 4669999999965533 1111 122568999999996 55555555
No 430
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.63 E-value=0.66 Score=59.33 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=69.7
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcC---CCcHHHHHHH---HHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMG---DSYHADCLNL---MKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g---~~~~~~ale~---~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
+.-+.|-..+|||++|+.+|..+= +++...-+++ .++. +-+++|+..+ .+|+.. ......|.-|...
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~p~~~-~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSGGSSSA-REILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHh
Confidence 334688889999999999988763 4433322333 3677 8899999877 455443 3444556666655
Q ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++|++|..+|+++- . ..+ +. .+....+|..|++.|+.++|...|.+
T Consensus 168 g~~~~A~~~y~~~~-------------------~---~~p-~~---~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 168 GQSEQADACFERLS-------------------R---QHP-EF---ENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred cchHHHHHHHHHHH-------------------h---cCC-Cc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555554432 1 211 11 23455677777777777777777665
No 431
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.57 E-value=0.88 Score=50.56 Aligned_cols=112 Identities=11% Similarity=0.107 Sum_probs=71.2
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--CCCceeEEEEcCCCCeEEEEecC------CC------
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSGANIAAVYDR------KS------ 245 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~~~v~slawsPdG~~IAs~s~d------~~------ 245 (1196)
.|||||.+|- ++.+..+.+++.|=|||. +-.++.+.|- +.---+.+.|.+||++++.+... -+
T Consensus 120 vfs~dG~~LY--ATEndfd~~rGViGvYd~-r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLY--ATENDFDPNRGVIGVYDA-REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEE--eecCCCCCCCceEEEEec-ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 4999999986 332222356889999999 5556665552 22123789999999999887541 00
Q ss_pred CCCCCeEEEEe-CCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccC
Q 000992 246 ENKCPSIVFYE-RNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 246 ~~~~~~V~~~e-~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
..-...+++.+ ..|....+-+|+. ....+|..++--+||++++.+-..+
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence 11134566676 6666555445651 1235788888888888776654433
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.57 E-value=0.12 Score=64.42 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=60.1
Q ss_pred cEEEEecccccccccceeeccccccccccCCC-C---CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCc
Q 000992 43 NIYSAQLSSFQNERASIKTAISAEIEHIDLEP-G---DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGG 118 (1196)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~ 118 (1196)
.+|.+|+ .+++.+.++. -++..| + ..|....|-+..-.+|.+-.+|+|.+.+.+.....++-+|..+
T Consensus 156 fVy~vd~--l~G~iq~~l~-------v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~ 226 (1283)
T KOG1916|consen 156 FVYDVDV--LQGEIQPQLE-------VTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQR 226 (1283)
T ss_pred heeehHh--hccccccceE-------EeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCC
Confidence 3556666 6776655542 122333 2 3455556666788999999999999966554222222124433
Q ss_pred EEE-----------EEECCCCCEEEEEeCCceEEEEe
Q 000992 119 VRF-----------ISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 119 I~~-----------~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
+.. ...||||+.+|.+..||.+..|.
T Consensus 227 ~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 227 VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred cccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 333 34799999999999999998774
No 433
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.56 E-value=0.67 Score=45.83 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
+.+.+|...|+.++|+..|.++- . .+++.+........++..|...|++++|..++.+-
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al------~----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRAL------A----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH------H----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56688899999999999996543 2 24455555667888999999999999999998773
No 434
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.41 E-value=0.96 Score=57.20 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000992 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1196)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1196)
+....+...-|..+.+.|.|++|+++|..||+|++|++...+.- .+++..-..-...++.+..++..+.+.+...+-+
T Consensus 619 ~~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~L--S~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~ 696 (835)
T KOG2168|consen 619 EDLQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLL--SQVLHSPTLGQSNKERLGDLALSMNDIYESNKGD 696 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHhhcccCCcchhhHHHHHHHHHHHHHhccCc
Confidence 35667888889999999999999999999999999988775543 2233211111224567778999999998765544
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1067 GEAAKIALD--YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1067 ~eAa~i~~~--yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+- ..+.. -+=|+-.+-+.|- .++|++|+++.+.
T Consensus 697 ~~~-~~~~t~~lLl~~~~~f~~y~-~~~~e~aL~~le~ 732 (835)
T KOG2168|consen 697 SAK-VVVKTLSLLLDLVSFFDLYH-NGEWEEALSILEH 732 (835)
T ss_pred chh-hHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 332 11111 1345556666654 4579999998765
No 435
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.14 E-value=7.4 Score=47.30 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=38.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-------Ee-eeecCcEEEEEECCCC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-------VV-GRVEGGVRFISPSPDG 128 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-------~v-g~~~~~I~~~awSPDg 128 (1196)
+.+++|+|.|||+.|++--..|.|++++..++... .+ ..-+++...++++||-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 46899999999987765444699999987654221 11 1126889999999995
No 436
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=92.13 E-value=1.1 Score=51.16 Aligned_cols=94 Identities=20% Similarity=0.360 Sum_probs=60.0
Q ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHH
Q 000992 1012 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISL 1086 (1196)
Q Consensus 1012 ~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~-----~eAa~i~~~yl~d~~~Ai~~ 1086 (1196)
-+...|+.++|+++..+.++|-.||-||..+ +++...++..++...-...++. .-=..+|.=+.|+.+.+|+-
T Consensus 4 ~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~--g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~ 81 (284)
T PF12931_consen 4 QLLLVGNREEAVELALDNGLWAHALLLASSL--GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDE 81 (284)
T ss_dssp HHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHCCChHHHHHHHHhc--CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHH
Confidence 4677899999999999999999999999876 5666655555555444322332 11234555568999999988
Q ss_pred HHHh------------cCHHHHHHHHHhcCCch
Q 000992 1087 LIDA------------RDWEEALRVAFMHRRED 1107 (1196)
Q Consensus 1087 y~~~------------~~w~eA~rla~~~~~~d 1107 (1196)
++.. ++|.+.+.+.-.+..++
T Consensus 82 l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~ 114 (284)
T PF12931_consen 82 LVPNSAAPPLEGEWDLDNWRETLAIILSNRTPE 114 (284)
T ss_dssp HHH-----HHHHHHHHHSHHHHHHHHHHTS---
T ss_pred hccccccccccccchhcCHHHHHHHHHhCCCcc
Confidence 8765 48999998877765443
No 437
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.12 E-value=6.2 Score=41.86 Aligned_cols=52 Identities=10% Similarity=-0.093 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.....++..+...|++.+|...+.+-+. + ...-..+|.+.++|++|.....+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556678888889999999998877432 1 12334567778888888876554
No 438
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=91.97 E-value=0.4 Score=34.36 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=29.2
Q ss_pred cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 213 TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 213 ~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+.......+...+.+++|.|+++++++++.+. .|.+|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~------~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDG------TIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCC------eEEEcC
Confidence 34445555777889999999999999998753 577774
No 439
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=1.8 Score=55.79 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=62.8
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
.+-.||.|+..+ .|..++.+|... .+.-.....+.|.+++||.||++|+.|..+| .|.+||+.+..- -
T Consensus 98 ~~~~ivi~Ts~g------hvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G---~V~v~D~~~~k~--l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHG------HVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDG---HVTVWDMHRAKI--L 165 (1206)
T ss_pred eeeeEEEEcCch------hhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCC---cEEEEEccCCcc--e
Confidence 345677777643 466676666321 1111122356899999999999999999999 899999988543 2
Q ss_pred EEEEEecC--Cc-EEEEEccCCCceEEEEecCCcE
Q 000992 313 YEIRYLRR--DG-IRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 313 q~l~~~~~--~~-~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
+.+..+.. .+ ..+.|..++. .+......|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gsf 199 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGSF 199 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCc-EEEEccCCCce
Confidence 34444332 22 6677887776 34444445543
No 440
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.87 E-value=1.4 Score=48.97 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=37.1
Q ss_pred EEccCCCEEEEEE-----CCCcEEEEECCCCeEEEee---eecCcEEEEEECCCCCEEEEEeC
Q 000992 82 DYLMEKEALIVGT-----SSGLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTTG 136 (1196)
Q Consensus 82 ~~spd~~~La~as-----~dG~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDg~~LA~~s~ 136 (1196)
.|||||+.|...- .-|-|-+||...+ ..-+| .|.-|-..+.|.+||++|+.+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 3899999987542 2366888998742 22222 22335567899999999999976
No 441
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.83 E-value=3.1 Score=55.54 Aligned_cols=19 Identities=5% Similarity=-0.148 Sum_probs=9.5
Q ss_pred cHHHHhhCHHHHHHHHHHc
Q 000992 939 TIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~ 957 (1196)
.+...+|++++|+.++.++
T Consensus 86 ~~yl~~g~~~~A~~~~~kA 104 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQ 104 (987)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 4444455555555555544
No 442
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=91.77 E-value=0.6 Score=52.89 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCEEEEEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeE
Q 000992 32 QNRLFFASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~~~ 109 (1196)
++.|+.++-++.|+.+|+-. .++++ |.... +-....|++++.+. +++.|.+.+-+|+|+|||..-.++
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~r---------lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQR---------LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCC-cceEE---------EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 56777788888899999831 12222 22221 11246799999988 788888888999999999874332
Q ss_pred E-EeeeecCcEEEEE-----ECCCCCEEEEEeCCceEEEEe-ccCceeeeeec
Q 000992 110 E-VVGRVEGGVRFIS-----PSPDGDLLGVTTGFGQILVMT-HDWDLLYENPL 155 (1196)
Q Consensus 110 e-~vg~~~~~I~~~a-----wSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l 155 (1196)
. -|...++-|+..+ ..|....+++++.|--.++|+ +++..+.+.+.
T Consensus 334 ~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 334 KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 1 1222222233332 456666778888887777886 44555555543
No 443
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=91.68 E-value=1 Score=56.81 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=96.8
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
-+-++++|- +|. ..++|-+-|..+-+.+.++..|.+.+.+ |.-+||++++++... ++..
T Consensus 183 mR~Nnr~lf-~G~------t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~--------R~~~---- 241 (1118)
T KOG1275|consen 183 MRYNNRNLF-CGD------TRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSM--------RRYN---- 241 (1118)
T ss_pred EEecCcEEE-eec------ccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeeccc--------cccc----
Confidence 345666665 453 3567777777777777777777765543 556777777776421 1100
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEec
Q 000992 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
+. -|. -|++||+.++.. .-.+.++ .++..+.|+|.=..++++.+.
T Consensus 242 ------l~-----------------------~D~---FvkVYDLRmmra--l~PI~~~-~~P~flrf~Psl~t~~~V~S~ 286 (1118)
T KOG1275|consen 242 ------LA-----------------------MDP---FVKVYDLRMMRA--LSPIQFP-YGPQFLRFHPSLTTRLAVTSQ 286 (1118)
T ss_pred ------cc-----------------------ccc---hhhhhhhhhhhc--cCCcccc-cCchhhhhcccccceEEEEec
Confidence 00 122 589999988652 1223332 133668899988888888888
Q ss_pred CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000992 341 DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1196)
Q Consensus 341 ~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~l 419 (1196)
+|+....+-+ . ..+ ||...+.+ ...+.+....+|++| +.||.+.++|.|.+
T Consensus 287 sGq~q~vd~~---~---------------------lsN--P~~~~~~v~p~~s~i~~fDiSsn~--~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 287 SGQFQFVDTA---T---------------------LSN--PPAGVKMVNPNGSGISAFDISSNG--DALAFGDHEGHVNL 338 (1118)
T ss_pred ccceeecccc---c---------------------cCC--CccceeEEccCCCcceeEEecCCC--ceEEEecccCcEee
Confidence 8875432210 0 000 11111111 234458889999999 99999999999999
Q ss_pred EeC
Q 000992 420 VDL 422 (1196)
Q Consensus 420 w~~ 422 (1196)
|.-
T Consensus 339 wa~ 341 (1118)
T KOG1275|consen 339 WAD 341 (1118)
T ss_pred ecC
Confidence 983
No 444
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.66 E-value=1.1 Score=57.58 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=64.8
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-E
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-V 111 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~ 111 (1196)
+..|.|-+++.++.||. -.... ++. .. ..+.+.....-.+++=..+| .||+||.+|+|+|||..+.... .
T Consensus 543 e~tflGls~n~lfriDp--R~~~~--k~v--~~--~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~ 613 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDP--RLSGN--KLV--DS--QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTA 613 (794)
T ss_pred CceEEEECCCceEEecc--CCCCC--cee--ec--cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhc
Confidence 44555655666999998 33221 111 00 11122223455677767776 7899999999999997664332 3
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
+.+...+|..+.-|.||++|+..+ +.-+.|+.
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 333467899999999999987544 44565543
No 445
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=6 Score=50.83 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=112.5
Q ss_pred HhhCHHHHHHHHHHcCC-CcHHHHHHHHHHHhcChHHHHhhc-------CCc----H---------H---HH--------
Q 000992 943 RLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI-------TDP----A---------K---ME-------- 990 (1196)
Q Consensus 943 ~L~ry~~Al~~l~~~g~-~~~~~ale~~~~~~~ly~~AL~L~-------~d~----~---------~---~~-------- 990 (1196)
.-++-.+|++.|+++.+ ..+.+.++...+- +-|++-++.. ..| + + ..
T Consensus 1116 ~~~~v~dAieSyikadDps~y~eVi~~a~~~-~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~ 1194 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKADDPSNYLEVIDVASRT-GKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNV 1194 (1666)
T ss_pred hcCchHHHHHHHHhcCCcHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCc
Confidence 35778899999999863 3467777777777 8887766543 111 1 1 11
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAA 1070 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa 1070 (1196)
.=....|+-+.+.+.|+.|-++|....|+.|..-..+..|.|+.|...|++-+ +..-+++++ -.+...+.+.-|-
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn-s~ktWK~Vc----faCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN-STKTWKEVC----FACVDKEEFRLAQ 1269 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHH----HHHhchhhhhHHH
Confidence 11346789999999999999999999999999999999999999999999865 434445444 4444555666554
Q ss_pred HHHHH---hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1071 KIALD---YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1071 ~i~~~---yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+=+. ++.+.++-|+.|-.-+.|+|-+.|.+.
T Consensus 1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 33222 256889999999999999998876543
No 446
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.49 E-value=1.3 Score=44.99 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=51.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCCcHHHH---------HHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDSYHADC---------LNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~a---------le~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~ 1002 (1196)
+..+.+....|+|++|...|.+.-....+.. -...... +.|++|+.++ .++.....+....|+-+..
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYDEALATLQQIPDEAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 4456777778999999999887642211111 1222566 8899999988 3444455566666666666
Q ss_pred ccCHHHHHHHHHhC
Q 000992 1003 VKCFEDAATTYFCC 1016 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~a 1016 (1196)
.|++++|...|.+|
T Consensus 131 ~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 131 QGDYDEARAAYQKA 144 (145)
T ss_pred CCCHHHHHHHHHHh
Confidence 66666666666543
No 447
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.38 E-value=3.1 Score=52.78 Aligned_cols=150 Identities=12% Similarity=0.193 Sum_probs=89.1
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHH--hcChHHHHh----hc-C---CcH--HHHHHHHHHHHHHhcccC
Q 000992 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKY--AQLFPLGLK----LI-T---DPA--KMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~--~~ly~~AL~----L~-~---d~~--~~~~i~~~~A~~L~~~~~ 1005 (1196)
|.+-..-|.||.|++.|.+.. ...-.|+-+..-+ -+|....-. ++ . ++. .+..+...|...+ ...+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~-~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F-~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE-FNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF-EITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTT-TTT-
T ss_pred HHHHHHHhhHHHHHHHHHhhc-cCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH-hccC
Confidence 477778899999999999832 2235555444222 022222211 22 1 111 3456666777755 4668
Q ss_pred HHHHHHHHHhCCCHH---------HHH-HHHHHcCCHHHHHH-----------HHhh------cCCCHHHHHHHHHHHHH
Q 000992 1006 FEDAATTYFCCSSLE---------KAM-KAYRASGNWSGVLT-----------VAGL------LKLGKDEVAKLAQELCE 1058 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~---------kAl-~~y~~~g~w~~al~-----------la~~------l~~~~~~~~~l~~~la~ 1058 (1196)
.++|..+|.....+. +++ +.....++|...+- +..+ +.-.++.+.+++...|.
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 899998888776532 222 33345566766662 1112 22245678899999999
Q ss_pred HHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000992 1059 ELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1196)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~ 1090 (1196)
.+.+.|++.+|..+|.- +++++.++++.++.
T Consensus 423 ~~e~~g~~~dAi~Ly~L-a~~~d~vl~lln~~ 453 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHL-AEEYDKVLSLLNRL 453 (613)
T ss_dssp HHHHCT-HHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 99999999999999888 99999999999875
No 448
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.33 E-value=4.4 Score=39.32 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=62.0
Q ss_pred EeeecCC-CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 26 SALDIEQ-NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 26 ~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
+.||-|+ +.|.++|+|.-|..++- +. + +.++ ...+.|+++..+.. ..++-|.++|+|-+|+.
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~-----~e---~------~~Ei--~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKG-----DE---I------VAEI--TETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeC-----Cc---E------EEEE--ecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 3344442 68999999998877665 11 1 1111 11468999999988 56889999999999998
Q ss_pred CCCeEEEeeeecCcEEEEEECC-CC--C-EEEEEeCCceE
Q 000992 105 DGNATEVVGRVEGGVRFISPSP-DG--D-LLGVTTGFGQI 140 (1196)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSP-Dg--~-~LA~~s~d~tV 140 (1196)
......+... ..+.++++.. +| . -|++|=.+|.|
T Consensus 71 ~~RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 71 SQRLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred cceeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 7766665543 3356655543 32 1 35555556655
No 449
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.19 E-value=2.5 Score=49.30 Aligned_cols=104 Identities=15% Similarity=0.060 Sum_probs=74.8
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCCc------HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 938 YTIDLRLQRFENALKHIVSMGDSY------HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~~------~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
+.++.+-|+|.+|++++.+..+.. +-.|.++.... +.++.|=.+. ..++....+....++-+-.+++|
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 567788899999999999864321 23445556676 8888887765 21233445555678999999999
Q ss_pred HHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc
Q 000992 1007 EDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL 1042 (1196)
Q Consensus 1007 ~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l 1042 (1196)
..|..--.++-. ..-|.++|.+.|+|+.++.+...+
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 988766555432 245779999999999999877654
No 450
>PRK13613 lipoprotein LpqB; Provisional
Probab=91.08 E-value=12 Score=47.27 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=86.7
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
.+.+++.|+||..+|..+.++........+. -.....+. ..+ -.......-+|.++|..-. + +..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~-~~~~~~~~----~~~------~~~~~Lt~PS~d~~g~vWt-v---d~~ 428 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTP-GASIGVHS----WGV------TADGRLTSPSWDGRGDLWV-V---DRD 428 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCC-CCcccccc----cee------eccCcccCCcCcCCCCEEE-e---cCC
Confidence 6889999999999999988775433211100 00000000 000 0012346788999885433 3 211
Q ss_pred cCCCCEEEEEECCCCcEEEEec-cCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--Ce-eEEEE-EeccCC
Q 000992 198 SKLHKRLKVWERDSGTLQASSE-LKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GL-ERSSF-DINEQI 271 (1196)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~~~e-~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--Gl-~~~~f-~l~~~~ 271 (1196)
..+.+.+++... +|+....-- ...+ .|..+..||||-.+|....... .....|..-+|+ |. ...++ .+ .+.
T Consensus 429 ~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g-~~~v~va~V~R~~~G~~~l~~~~~l-~~~ 505 (599)
T PRK13613 429 PADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDG-RRSLQIGRIVRDAKAVVSVEEFRSL-APE 505 (599)
T ss_pred CCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCC-CcEEEEEEEEeCCCCcEEeeccEEe-ccC
Confidence 123346888877 777643221 2334 7899999999999998765321 112223334553 32 11111 11 122
Q ss_pred CCcEEEEEEccCCCeeEEEE
Q 000992 272 DSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~ 291 (1196)
-..+.+++|..++++++.+.
T Consensus 506 l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 506 LEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred CCccceeEEcCCCEEEEEec
Confidence 23489999999999877553
No 451
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.07 E-value=4 Score=41.07 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHhcccCHHHHHHHHHhCCCHHHHHHHHHHc-CCHHHHHHHHhh
Q 000992 998 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS-GNWSGVLTVAGL 1041 (1196)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~-g~w~~al~la~~ 1041 (1196)
..+...+-|++|..+|.+.|++++|++.+... ++.+.|+..+.+
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 33444556677777777777777777777766 667777766665
No 452
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.06 E-value=42 Score=40.33 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=98.1
Q ss_pred CCceEEEeeccccccCCCCEEEEEECC----CCcEEEEecc---C--CCc--eeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERD----SGTLQASSEL---K--AFM--GAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~----~G~l~~~~e~---~--~~~--v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
+-+||. +.+.. ...|.|.|.. .-++.++.|+ . .+. -+.+---|+|+.+.|+=.+..+..+..+
T Consensus 86 ~Rr~Li-~PgL~-----SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf 159 (461)
T PF05694_consen 86 ERRYLI-LPGLR-----SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGF 159 (461)
T ss_dssp -S-EEE-EEBTT-----T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EE
T ss_pred cCCcEE-eeeec-----cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcE
Confidence 456887 67653 3678888874 3356677664 1 122 2455566999988887555444456677
Q ss_pred EEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-----------------cceEEEEEecCCEEEEEEE
Q 000992 253 VFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-----------------YDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 253 ~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-----------------~~~V~lW~~~n~~wylkq~ 314 (1196)
.+.+.++ ...+.+.........-.++-|.|--+++.+.....+ ++++.+||+...+ ++|+
T Consensus 160 ~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~ 237 (461)
T PF05694_consen 160 VLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQT 237 (461)
T ss_dssp EEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEE
T ss_pred EEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeE
Confidence 7777553 223333322222334668889998888888765431 4599999999865 5788
Q ss_pred EEEecCCc----EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCC-eeEEEEcCCEEEEeeccccCCCCCceeeee-
Q 000992 315 IRYLRRDG----IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN-STALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1196)
Q Consensus 315 l~~~~~~~----~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~-~~v~viDg~~l~lt~l~~~~vpppm~~~~l- 388 (1196)
+....+.. ....|+|+...-+.-.-.++++ |.|--..++. ..=.||+=... +...|.+| +|- +.+
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i----~~~~k~~~g~W~a~kVi~ip~~---~v~~~~lp-~ml-~~~~ 308 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSI----WRFYKDDDGEWAAEKVIDIPAK---KVEGWILP-EML-KPFG 308 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEE----EEEEE-ETTEEEEEEEEEE--E---E--SS----GGG-GGG-
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceE----EEEEEcCCCCeeeeEEEECCCc---ccCccccc-ccc-cccc
Confidence 87654332 4456777776533222222222 2332211110 01111211111 12234433 221 111
Q ss_pred cCCCCEEEEEEecCCCCCEE-EEEECCCcEEEEeCCCCCcc
Q 000992 389 KFPTAVTEMAFYSKSSKNCL-AAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 389 ~~~~~V~~Vafspdg~~~~l-As~~~dg~v~lw~~~~~~~~ 428 (1196)
..+.-|+++..|.|. +.| ++.--+|.|+.||++.+..+
T Consensus 309 ~~P~LitDI~iSlDD--rfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 309 AVPPLITDILISLDD--RFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cCCCceEeEEEccCC--CEEEEEcccCCcEEEEecCCCCCC
Confidence 135568899999998 665 56667899999999876444
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.00 E-value=42 Score=40.32 Aligned_cols=138 Identities=18% Similarity=0.243 Sum_probs=79.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEE-Eec---cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEee
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILV-MTH---DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l-~~~---~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvs 192 (1196)
+....+.-+|||.+++.+.. |++.. |+. .|.++. . +....+..+.|++||..++ ++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~---~---------------~~~~~l~~v~~~~dg~l~l-~g 298 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHN---R---------------ASARRIQNMGWRADGGLWL-LT 298 (398)
T ss_pred cceeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEec---C---------------CCccceeeeeEcCCCCEEE-Ee
Confidence 44566778999988877654 44432 221 133221 1 1123568899999999887 55
Q ss_pred ccccccCCCCEEEEEECCCCcEEE--Eec----c-CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 193 EFCNSSKLHKRLKVWERDSGTLQA--SSE----L-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G~l~~--~~e----~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
. .+.+ +|..+.|+.-. .+. + ....+.++.|.++++.+++|..- +++...+|-.+ |
T Consensus 299 ~-------~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--------~v~~s~D~G~t--W 360 (398)
T PLN00033 299 R-------GGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG--------ILLRSTDGGKS--W 360 (398)
T ss_pred C-------CceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC--------cEEEeCCCCcc--e
Confidence 3 2443 45565664211 111 1 11246889999999999998652 33444333222 1
Q ss_pred Ee-c--cCCCCcEEEEEEccCCCeeEEEEc
Q 000992 266 DI-N--EQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 266 ~l-~--~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
.. + ..-....+++.|.++++..+++..
T Consensus 361 ~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 361 KRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred eEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 11 1 111345889999998888887643
No 454
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=90.98 E-value=3.7 Score=41.69 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCCHH-----------HHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSSLE-----------KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEE 1059 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~-----------kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~ 1059 (1196)
...-..|..+...++|++|...|..+-+.. +...++...|++++|+....... ++.-........++.
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHH
Confidence 334457788888888888888887664321 12356666777887777665432 211112233445555
Q ss_pred HHHcCChHHHHHHHHH
Q 000992 1060 LQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1060 L~~~~~~~eAa~i~~~ 1075 (1196)
+...|++.+|...|.+
T Consensus 128 ~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 128 YLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 5556666666555543
No 455
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.97 E-value=7.5 Score=46.60 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=82.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEE-EECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Cc---
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLL-HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WD--- 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~l-w~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d--- 148 (1196)
+....+.-++||..++++. .|.+.. |+.-....+ ..+ ....+.++.|++||.+++.+ ..|.+. ++++ ..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~-~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHNRA-SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEEC-CccEEEecCCCCcceEEecCC-CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc
Confidence 3456677889988777654 565544 443222122 222 24679999999999887654 566654 3332 11
Q ss_pred --eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe---ccCCC
Q 000992 149 --LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELKAF 223 (1196)
Q Consensus 149 --~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~---e~~~~ 223 (1196)
...+..... ....+..+.|.+|+..++ ++. .+.+.+..- .|+.=... .+...
T Consensus 315 ~~~f~~~~~~~--------------~~~~l~~v~~~~d~~~~a-~G~-------~G~v~~s~D-~G~tW~~~~~~~~~~~ 371 (398)
T PLN00033 315 DFDFEEADIKS--------------RGFGILDVGYRSKKEAWA-AGG-------SGILLRSTD-GGKSWKRDKGADNIAA 371 (398)
T ss_pred ccceeecccCC--------------CCcceEEEEEcCCCcEEE-EEC-------CCcEEEeCC-CCcceeEccccCCCCc
Confidence 111111110 012468899999999888 553 356655443 56542221 23344
Q ss_pred ceeEEEEcCCCCeEEEEec
Q 000992 224 MGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~ 242 (1196)
....+.|.++++.++++..
T Consensus 372 ~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 372 NLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred ceeEEEEcCCCceEEEeCC
Confidence 5679999999998888754
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.84 E-value=9.9 Score=44.49 Aligned_cols=114 Identities=22% Similarity=0.248 Sum_probs=55.9
Q ss_pred EEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC----CceEEEeecc
Q 000992 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLSEF 194 (1196)
Q Consensus 119 I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD----G~~lAsvss~ 194 (1196)
-++|+|.|||+++++ ...|.|.+.+.+.+....+. ... .| +.....+...|++.|+ +.+++ ..+.
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~--~~~---~v----~~~~~~gllgia~~p~f~~n~~lYv-~~t~ 72 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVA--DLP---EV----FADGERGLLGIAFHPDFASNGYLYV-YYTN 72 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEE--E-T---TT----BTSTTBSEEEEEE-TTCCCC-EEEE-EEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceec--ccc---cc----cccccCCcccceeccccCCCCEEEE-EEEc
Confidence 478999999988775 55899998875555411111 000 00 1122346789999995 66555 2321
Q ss_pred ccccCCCC--EEEEEECCCC--cEEE-----Eecc----CCCceeEEEEcCCCCeEEEEecC
Q 000992 195 CNSSKLHK--RLKVWERDSG--TLQA-----SSEL----KAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 195 d~~~~~d~--~irVWd~~~G--~l~~-----~~e~----~~~~v~slawsPdG~~IAs~s~d 243 (1196)
........ .|.-|....+ .+.. ...+ .......|+|.|||.+.++.+..
T Consensus 73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 10000111 2222332222 1111 1111 12234679999999887777654
No 457
>PRK13684 Ycf48-like protein; Provisional
Probab=90.78 E-value=13 Score=43.66 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=79.7
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEE-e---ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVM-T---HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~-~---~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
.+.+.++.++|||..++++ ..|.+..- + +.|..+.. +....+..+.+.|+|+.++ +
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~------------------~~~~~l~~i~~~~~g~~~~-v 231 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQR------------------NSSRRLQSMGFQPDGNLWM-L 231 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeC------------------CCcccceeeeEcCCCCEEE-E
Confidence 4568999999998766544 45655432 1 12332211 1123568899999999887 6
Q ss_pred eccccccCCCCEEEEEECCCCcEEEE-ecc---CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTLQAS-SEL---KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~~-~e~---~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1196)
+. .+.+++=+.+.|+.-.. ..+ ....+.+++|+|+|..++++.. ..++...+|-.+-+ .+
T Consensus 232 g~-------~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--------G~v~~S~d~G~tW~-~~ 295 (334)
T PRK13684 232 AR-------GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN--------GTLLVSKDGGKTWE-KD 295 (334)
T ss_pred ec-------CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC--------CeEEEeCCCCCCCe-EC
Confidence 54 35554334445542211 111 1123578999999998887754 24455555422211 11
Q ss_pred c--cCCCCcEEEEEEccCCCeeEEEEc
Q 000992 268 N--EQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 268 ~--~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
+ .......+.+.|-.+++.+|++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 296 PVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CcCCCCCcceEEEEEeCCCceEEECCC
Confidence 1 111235778888888888776644
No 458
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.75 E-value=0.82 Score=54.45 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=68.8
Q ss_pred hHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHh
Q 000992 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLS 1001 (1196)
Q Consensus 922 lpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~ 1001 (1196)
+.++++|.+-++. +... -.+.+..+++ ..+|+.++.+. |+.. |.. -.++..+|++|.
T Consensus 189 i~lle~L~~~~pe-----v~~~------LA~v~l~~~~--E~~AI~ll~~a-------L~~~--p~d-~~LL~~Qa~fLl 245 (395)
T PF09295_consen 189 IELLEKLRERDPE-----VAVL------LARVYLLMNE--EVEAIRLLNEA-------LKEN--PQD-SELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhcCCc-----HHHH------HHHHHHhcCc--HHHHHHHHHHH-------HHhC--CCC-HHHHHHHHHHHH
Confidence 6777777766432 2221 1333334433 46666555444 3322 222 678889999999
Q ss_pred cccCHHHHHHHHHhC--------CCHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 000992 1002 DVKCFEDAATTYFCC--------SSLEKAMKAYRASGNWSGVLTVAGLLKLG 1045 (1196)
Q Consensus 1002 ~~~~~~eAa~~y~~a--------g~~~kAl~~y~~~g~w~~al~la~~l~~~ 1045 (1196)
.+++|+.|..+..+| .-+....++|+..|+|++|+......++.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999888 34578889999999999999877766543
No 459
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=90.54 E-value=2.5 Score=46.38 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=12.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVS 956 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~ 956 (1196)
+.........|+|++|+..|.+
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~ 58 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEA 58 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444456677777776654
No 460
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=90.33 E-value=9.2 Score=49.26 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHh-----------------------------------CCCHHHHHHHHHHc----
Q 000992 989 MEQVLEAWADHLSDVKCFEDAATTYFC-----------------------------------CSSLEKAMKAYRAS---- 1029 (1196)
Q Consensus 989 ~~~i~~~~A~~L~~~~~~~eAa~~y~~-----------------------------------ag~~~kAl~~y~~~---- 1029 (1196)
-..++..+|+|...+++|.-|-.-|+. .+.++||+.+|.+.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 345667788888888887777663322 12347777776632
Q ss_pred -----------------CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH-----HHHHHH-
Q 000992 1030 -----------------GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV-----TNGISL- 1086 (1196)
Q Consensus 1030 -----------------g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~-----~~Ai~~- 1086 (1196)
|+|.+|..+-.+....-.+..+....+|.-+.++|+|..|.++|...+.++ .+-+.+
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 356666666555421111112444557777788888888888887744332 233333
Q ss_pred ---HHHhcCHHHHHHHH
Q 000992 1087 ---LIDARDWEEALRVA 1100 (1196)
Q Consensus 1087 ---y~~~~~w~eA~rla 1100 (1196)
|-+++.|.+|.+-+
T Consensus 723 ara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 33456677666543
No 461
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=90.31 E-value=1.8 Score=56.33 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000992 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1196)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1196)
.-...++...+++.+++--+..=|..|.+.|++++|..+|.++-.|+ +++ ...+..+|..+... +.
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------------~~n-~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------------RDN-PEIVKKLATSYEEE-DK 165 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------ccc-HHHHHHHHHHHHHh-hH
Confidence 34556666667766666555666677777777777777765444332 222 24667777777777 88
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 000992 1067 GEAAKIALDYCGDVTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1067 ~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
..|.+.+.+ ||..|+.-+++.++..+=.
T Consensus 166 ~KA~~m~~K-------AV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 166 EKAITYLKK-------AIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHHH-------HHHHHHhhhcchHHHHHHH
Confidence 888877665 9999999999999987543
No 462
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=90.29 E-value=0.44 Score=52.05 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeE--EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccC
Q 000992 76 DSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~ 147 (1196)
+.|.+++-+|-. ..+|.|+.||.|.|||.+.... ..+-.|+..|+-+-|.| +++-|.++++||.+..|+...
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 458888888865 5678999999999999876432 35566889999999998 588999999999997776543
No 463
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=90.26 E-value=4.7 Score=51.79 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=87.9
Q ss_pred HHhhCHHHHHHHHHHc---CCC--cHHHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHHHHHH
Q 000992 942 LRLQRFENALKHIVSM---GDS--YHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATT 1012 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~---g~~--~~~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~ 1012 (1196)
.-.|.+++|++.|-+. .+- +..--|-.+--+-+-|..|+.++ ....+..+++...|.-+..+++|..|..+
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 3456677777776532 110 00111222222226788888888 22233557788889999999999999999
Q ss_pred HHhCC-------CH---HHHHHHHHHcCCHHHHHHHH---hhcCCCHH----HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1013 YFCCS-------SL---EKAMKAYRASGNWSGVLTVA---GLLKLGKD----EVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1013 y~~ag-------~~---~kAl~~y~~~g~w~~al~la---~~l~~~~~----~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
|+.|- +. .--.++|.++|.|++|..-+ .++.++.. .+..++.++|+...+..+ .-..++...
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k-~t~eev~~a 781 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK-RTLEEVLEA 781 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc-ccHHHHHHH
Confidence 99872 11 22347788888899988543 33322211 223445556665544333 334444333
Q ss_pred hcCCHHHHHHHHHHhcCHHH
Q 000992 1076 YCGDVTNGISLLIDARDWEE 1095 (1196)
Q Consensus 1076 yl~d~~~Ai~~y~~~~~w~e 1095 (1196)
.+..+.|+++++......+
T Consensus 782 -~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 782 -VKELEEARRLFTELSKNGD 800 (1018)
T ss_pred -HHHHHHHHHHHHHHHhcCC
Confidence 5677777777776554433
No 464
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.17 E-value=6.9 Score=38.01 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=48.2
Q ss_pred EEEEEEcc---CC-CEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 78 ITAFDYLM---EK-EALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 78 v~~v~~sp---d~-~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
|.+++++. || ..|++||+|..|++|+-+.-..|+.. .+.|.+++=.+. ..+|.+..+|||-++.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e--~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITE--TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEec--ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 45555544 33 58999999999999998764444433 356888877777 67999999999998753
No 465
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.14 E-value=4.2 Score=46.68 Aligned_cols=164 Identities=17% Similarity=0.118 Sum_probs=86.3
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHH---hcChHHHH----hhcCCc-H-HHHHHHHHHHHHHhcccCHHH
Q 000992 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKY---AQLFPLGL----KLITDP-A-KMEQVLEAWADHLSDVKCFED 1008 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~---~~ly~~AL----~L~~d~-~-~~~~i~~~~A~~L~~~~~~~e 1008 (1196)
|.-..-||+|+.++.-+.+.... .-+|+.++-.. |..-+.++ +++.++ . .-..+...-|-.+...+++++
T Consensus 42 ~Rs~iAlg~~~~vl~ei~~~~~~-~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~ 120 (290)
T PF04733_consen 42 YRSYIALGQYDSVLSEIKKSSSP-ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEE 120 (290)
T ss_dssp HHHHHHTT-HHHHHHHS-TTSSC-CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHcCChhHHHHHhccCCCh-hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHH
Confidence 34444577777777666544321 23333333221 11122232 222111 1 112233344455666778888
Q ss_pred HHHHHHhCCCHHH---HHHHHHHcCCHHHHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH---
Q 000992 1009 AATTYFCCSSLEK---AMKAYRASGNWSGVLTVAGLLK-LGKDE-VAKLAQELCEELQALGKPGEAAKIALDYCGDV--- 1080 (1196)
Q Consensus 1009 Aa~~y~~ag~~~k---Al~~y~~~g~w~~al~la~~l~-~~~~~-~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~--- 1080 (1196)
|.......++.|- ++.+|...++.+.|-.....+. .+++. +..+++..........++.+|-.+|.+....+
T Consensus 121 AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t 200 (290)
T PF04733_consen 121 ALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST 200 (290)
T ss_dssp HHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S
T ss_pred HHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC
Confidence 8777777766642 3477888888777765554432 22222 22333333333333457999999999965553
Q ss_pred ----HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1081 ----TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1081 ----~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
..-.-+++..++|+||-.+..+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2233467789999999887665
No 466
>PRK13615 lipoprotein LpqB; Provisional
Probab=89.92 E-value=21 Score=44.59 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=87.2
Q ss_pred EEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccC
Q 000992 120 RFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1196)
Q Consensus 120 ~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~ 199 (1196)
.+++.|+||..+|....++.+.++... ...... +. -.....-+|.++|-.=. +- ++
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~-~~----------------~~~Lt~PS~d~~g~vWt-v~--~g--- 392 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLL-DT----------------RPGLVAPSLDAQGYVWS-TP--AS--- 392 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceee-cc----------------CCccccCcCcCCCCEEE-Ee--CC---
Confidence 789999999999999888766554221 011110 00 01246788999884322 22 11
Q ss_pred CCCEEEEEECCCCcEEEEe-c-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-E--ec-cCCCC
Q 000992 200 LHKRLKVWERDSGTLQASS-E-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-D--IN-EQIDS 273 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~-e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~--l~-~~~~~ 273 (1196)
..+.+..... +|+....- . ...+.|..+..|+||..+|...+..+ ..+..|.--.|.|.....+ + +. .+...
T Consensus 393 ~~~~l~~~~~-~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g-~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~ 470 (557)
T PRK13615 393 DPRGLVAWGP-DGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGA-GPQLLVASIVRDGGVPTSLTTTPLELLASPG 470 (557)
T ss_pred CceEEEEecC-CCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCC-CCEEEEEEEEeCCCcceEeeeccEEcccCcC
Confidence 1222333333 56654331 1 13357899999999999998765322 1122333355643311111 1 11 12234
Q ss_pred cEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 274 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 274 ~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.+.+++|..++++.+.+...+....+++-.+.
T Consensus 471 ~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 471 TPLDATWVDELDVATLTLAPDGERQVELHQVG 502 (557)
T ss_pred cceeeEEcCCCEEEEEeccCCCCceEEEEECC
Confidence 78999999999977766432222245555544
No 467
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.88 E-value=45 Score=43.49 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCC---CHHHHHHHHHHcCCHHHHHH---HHhhc-C---CCHH---------HHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSGVLT---VAGLL-K---LGKD---------EVA 1050 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag---~~~kAl~~y~~~g~w~~al~---la~~l-~---~~~~---------~~~ 1050 (1196)
..++...|.---..+.-.+|...|++|. +|..-++...++|.|++++. +|++- . .+.+ ++.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH
Confidence 3566666666677888899999999996 56778888889999998874 44331 1 1100 000
Q ss_pred H-----------HHHHHHHHHHHcCChHHHHHHHHH------------hcCCHHHHHHHHHHhc
Q 000992 1051 K-----------LAQELCEELQALGKPGEAAKIALD------------YCGDVTNGISLLIDAR 1091 (1196)
Q Consensus 1051 ~-----------l~~~la~~L~~~~~~~eAa~i~~~------------yl~d~~~Ai~~y~~~~ 1091 (1196)
+ -...+++++-+.|.|+.|.-+|-. |+|++..||+.-.|++
T Consensus 1184 elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1 123355677788888877666644 4555555555555543
No 468
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.70 E-value=21 Score=44.29 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=100.7
Q ss_pred CCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCC-CcHHHHHHHHHHHhcChHHHHhhc-----CCcHHH
Q 000992 916 RDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI-----TDPAKM 989 (1196)
Q Consensus 916 ~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~-~~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~ 989 (1196)
|-|+=.|-+||-|- .++.|-.--.-|+.||+-|--.-. .-++.-+.++..| .+=..++..| .+|+.
T Consensus 100 kmpRIwl~Ylq~l~------~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~- 171 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLI------KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEA- 171 (835)
T ss_pred cCCHHHHHHHHHHH------hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHH-
Confidence 45554444444342 334555445558888887654321 2258888999999 9988888888 46665
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCC--HHHHHHHHhhcC-----------------CCHHHHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGN--WSGVLTVAGLLK-----------------LGKDEVA 1050 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~--w~~al~la~~l~-----------------~~~~~~~ 1050 (1196)
.+.|-++|....++.+|+.-|+..-+-++=+..+.+... |.+...+..+.+ --.+++-
T Consensus 172 ---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 172 ---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred ---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 456669999999999999999998887777666665543 888877666532 1133444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
-|-..||++..+.|+++.|..+|.+
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5566677777777777777777655
No 469
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=20 Score=40.01 Aligned_cols=94 Identities=19% Similarity=0.121 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-------------------HHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHcCC
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGN-------------------WSGVLTVAGLLKLGKDEV-AKLAQELCEELQALGK 1065 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~-------------------w~~al~la~~l~~~~~~~-~~l~~~la~~L~~~~~ 1065 (1196)
...|+++|...|+++.|+++....+. .++.+.-+.. .+.+.. ..||...........+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQ--IDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhccchh
Confidence 34688889999999888877766442 2222222222 233322 2344444444455677
Q ss_pred hHHHHHHHHHhcCCH-------HHHHHHHHHhcCHHHHHHHHH
Q 000992 1066 PGEAAKIALDYCGDV-------TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1066 ~~eAa~i~~~yl~d~-------~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
+.+|--+|.++.+.+ ..-.-+++..++|+||-.+.+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 999999999966522 223345667889999976543
No 470
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.66 E-value=19 Score=43.45 Aligned_cols=75 Identities=12% Similarity=0.002 Sum_probs=51.4
Q ss_pred HHHHHHh--cCCcchhhHHHHHHhcC-Chh-----hhcccHHHHhhCHHHHHHHHHHc---CCCcH---HHHHHHHHHHh
Q 000992 908 AIVALNS--QRDPKEFLPYLQELESM-PPL-----LMRYTIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYA 973 (1196)
Q Consensus 908 l~vAq~s--q~DpkeYlpfL~~L~~l-~~~-----~~r~~Id~~L~ry~~Al~~l~~~---g~~~~---~~ale~~~~~~ 973 (1196)
++.|+-+ +.|+.+...+|++..+. +.. +...+|....|+|++|+..+.+. .+++. .....++...
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~- 200 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS- 200 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-
Confidence 3445544 48988888888886554 221 22478888899999999887765 33333 2445556777
Q ss_pred cChHHHHhhc
Q 000992 974 QLFPLGLKLI 983 (1196)
Q Consensus 974 ~ly~~AL~L~ 983 (1196)
+.|+.|++++
T Consensus 201 ~d~~~a~~~l 210 (409)
T TIGR00540 201 GAWQALDDII 210 (409)
T ss_pred hhHHHHHHHH
Confidence 8899888877
No 471
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=3.1 Score=45.56 Aligned_cols=67 Identities=27% Similarity=0.240 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-------------CHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHcCChHHHHHH
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASG-------------NWSGVLTVAGLLKLGKD-EVAKLAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g-------------~w~~al~la~~l~~~~~-~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1196)
++|..+|..+|..+-|..+..+++ -|++++.+..+- +.. .--+++..++..|...++|.||+..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 445555555555444444443333 145566555442 222 1246788888889999999999998
Q ss_pred HHH
Q 000992 1073 ALD 1075 (1196)
Q Consensus 1073 ~~~ 1075 (1196)
+++
T Consensus 173 ~lK 175 (308)
T KOG1585|consen 173 FLK 175 (308)
T ss_pred HHH
Confidence 877
No 472
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.51 E-value=7.9 Score=50.64 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=76.5
Q ss_pred HHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh-
Q 000992 968 LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL- 1041 (1196)
Q Consensus 968 ~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~- 1041 (1196)
++++. +.+++|.+.| .||+ -..+++.||.+|... +.++|..||. ||+..|+..+++.+++.+=.+
T Consensus 125 ~Ydk~-g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~------KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 125 AYAKL-NENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLK------KAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHc-CChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHH------HHHHHHHhhhcchHHHHHHHHH
Confidence 45566 6666666666 4543 456889999999999 9999999885 588889988886666653322
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+...+++...+..-+-..+.+.+ +..++.+++ --.+.|-++++|++++.+.+.
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~-------~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLE-------DLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhc-cchhHHHHH-------HHHHHHhhhhhhhHHHHHHHH
Confidence 22344555544444444444433 333333332 345778899999999876554
No 473
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=89.42 E-value=36 Score=42.42 Aligned_cols=53 Identities=8% Similarity=0.134 Sum_probs=34.6
Q ss_pred HHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1024 KAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1024 ~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
++|.++|+..+|...+.+. .+|..+. -|...+|.++..+.+-++|+++...|-
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD~aDR-~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELDTADR-AINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhccchhH-HHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 6667777777777655432 2333332 355578888888888888888777764
No 474
>PRK14574 hmsH outer membrane protein; Provisional
Probab=89.30 E-value=12 Score=49.06 Aligned_cols=168 Identities=15% Similarity=0.019 Sum_probs=111.2
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHcCCCcHH------HHHHHHHHHhcChHHHHhhc---CCc-HHHHHHHHHHHHHHhcc
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSMGDSYHA------DCLNLMKKYAQLFPLGLKLI---TDP-AKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~------~ale~~~~~~~ly~~AL~L~---~d~-~~~~~i~~~~A~~L~~~ 1003 (1196)
.+-++.|..-.|+|+.|+..|.++-....+ ..+.+.-.. +.+++|+..+ .+| ...-..+...|.-+..+
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 344456667788999999998877421112 224556677 8899999988 232 22233444567899999
Q ss_pred cCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
++|.+|..+|.++-.. -..+..|...++..+|+..+.++. .+++ . ..+..++..+...+++.+|.+.|.
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~-~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-V-QNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-h-HHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999988321 122366778889999998887753 2222 2 223444555556778877888888
Q ss_pred HhcC----CHHH---HHHHHHHhcCHHHHHHHHHhcC
Q 000992 1075 DYCG----DVTN---GISLLIDARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1075 ~yl~----d~~~---Ai~~y~~~~~w~eA~rla~~~~ 1104 (1196)
+.+. +.+- =+..+.+.+--.-|.+++.+|+
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 8542 2222 2344557788889999999886
No 475
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=89.24 E-value=76 Score=40.57 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=93.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcE--EEEECCC-CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLL--LLHSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I--~lw~~~~-~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+..+..+.|+|||+.++..+.+|.. .+|-... + ....+..+|....|||+|+.++..+.++.... +..
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~---~~~--- 129 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKR---DGG--- 129 (620)
T ss_pred CCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEeccccccc---CCc---
Confidence 5788999999999999998855542 2332221 2 23344567899999999999998444432211 111
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
. .... .-..+-|.++|. ....+.+.|. ++ ...........+...+|.
T Consensus 130 ~-~~~~-----------------~~~~~~~~~~g~-------------~~~~l~~~d~-~~-~~~~~~~~~~~~~~~~~~ 176 (620)
T COG1506 130 D-HLFV-----------------DRLPVWFDGRGG-------------ERSDLYVVDI-ES-KLIKLGLGNLDVVSFATD 176 (620)
T ss_pred e-eeee-----------------cccceeecCCCC-------------cccceEEEcc-Cc-ccccccCCCCceeeeeeC
Confidence 0 0000 002233444440 1233444454 32 111122233445677777
Q ss_pred CCCCeEEEEecCCC-CCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 232 PSGANIAAVYDRKS-ENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 232 PdG~~IAs~s~d~~-~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
++++.+++...+.. ..-.....++. .+|.... + .+....+..+.|.+||+.++..+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~gk~~~~~~~~~ 237 (620)
T COG1506 177 GDGRLVASIRLDDDADPWVTNLYVLIEGNGELES---L-TPGEGSISKLAFDADGKSIALLGTES 237 (620)
T ss_pred CCCceeEEeeeccccCCceEeeEEEecCCCceEE---E-cCCCceeeeeeeCCCCCeeEEeccCC
Confidence 77888888876532 11111122221 2332211 1 22345688999999999777776655
No 476
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=89.10 E-value=15 Score=46.99 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1046 KDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1046 ~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.++..+++.++|+.|.+.|+|.+|-.++-.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445568899999999999999998766544
No 477
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.04 E-value=7.5 Score=48.12 Aligned_cols=214 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhC-------HHHHHHHHHHcC--CCcHHHHHHHH-------
Q 000992 906 LAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQR-------FENALKHIVSMG--DSYHADCLNLM------- 969 (1196)
Q Consensus 906 lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~r-------y~~Al~~l~~~g--~~~~~~ale~~------- 969 (1196)
++.-.---||-.++|=++.+++|...-.+-. -+-.-+|| |++|.+.|.... +..+-+-+|++
T Consensus 323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~--wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL 400 (638)
T KOG1126|consen 323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTG--WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL 400 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Q ss_pred -HHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC---------------------CCHHHHHHHHH
Q 000992 970 -KKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYR 1027 (1196)
Q Consensus 970 -~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a---------------------g~~~kAl~~y~ 1027 (1196)
+++ .|=-.|.+|.......++-|.+.|.-+.-|++|+.|.+.|++| .++++|+.+|+
T Consensus 401 q~~v-~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 401 QDEV-ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HhhH-HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHH
Q ss_pred HcC---------------------CHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-------
Q 000992 1028 ASG---------------------NWSGVL-TVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------- 1078 (1196)
Q Consensus 1028 ~~g---------------------~w~~al-~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------- 1078 (1196)
.+- +++.|. ..-+.+...+.... +..-++..+.+.|+.++|-++|.+-+.
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv-i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV-ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh-HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHH
Q 000992 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSL 1123 (1196)
Q Consensus 1079 d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~e~~~~~ 1123 (1196)
-.=.-+.++...+.++||+.+.+.-+.--.-|. |.-.+..-+.++
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
No 478
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.01 E-value=2.9 Score=50.09 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=42.1
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
-.+|+||.+|+|+|||.-+.... .+.+...+|.-+--+.||++|. ||.+..+.+++
T Consensus 442 G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLID 498 (644)
T ss_pred ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEE
Confidence 48899999999999998553322 2333456899999999999986 55566777765
No 479
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.92 E-value=15 Score=42.94 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=64.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCc------EEEEecccccc-cccceee-ccccccc---cccCCC-CCCEEEEEEccCCCE
Q 000992 22 ILQFSALDIEQNRLFFASSANN------IYSAQLSSFQN-ERASIKT-AISAEIE---HIDLEP-GDSITAFDYLMEKEA 89 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~------i~~~~~~~~~~-~~~~~~~-~~~~~l~---~~~~~~-~~~v~~v~~spd~~~ 89 (1196)
.+.++++|++++.+|.+|+++. ++..++....+ .....+. ..+ |. +.++.+ .--.=+|++.++|..
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIP--LRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecccee--ccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 6889999999999999999988 87777621011 1111110 000 10 111100 012337788666655
Q ss_pred EEEEECCC-------cEEEEECCCCeEEEe---e------------eecCcEEEEEECCCCCEEEEEeC
Q 000992 90 LIVGTSSG-------LLLLHSVDGNATEVV---G------------RVEGGVRFISPSPDGDLLGVTTG 136 (1196)
Q Consensus 90 La~as~dG-------~I~lw~~~~~~~e~v---g------------~~~~~I~~~awSPDg~~LA~~s~ 136 (1196)
++ +++.+ .|.-++.++...+.+ . ....|..+++++|||+.|.++.+
T Consensus 99 ~i-s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WI-SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EE-EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 54 45544 566677764322111 1 12468999999999997777754
No 480
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.92 E-value=1.5 Score=43.40 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=41.3
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CC---CcHHHHHHHH---HHHhcChHHHHhhc-------CCcHHHHHHHHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GD---SYHADCLNLM---KKYAQLFPLGLKLI-------TDPAKMEQVLEAWAD 998 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~---~~~~~ale~~---~~~~~ly~~AL~L~-------~d~~~~~~i~~~~A~ 998 (1196)
++.+...+.+|+.++|+.+|.++ |. .+.+..|.+- +.. +.+++|+.++ .+++-...+..-+|.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44556667777777777777654 21 1111112221 445 5666666665 122223344444556
Q ss_pred HHhcccCHHHHHHHHHh
Q 000992 999 HLSDVKCFEDAATTYFC 1015 (1196)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ 1015 (1196)
-|...+++++|...+..
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66666666666555544
No 481
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.86 E-value=59 Score=38.83 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=44.5
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCC---CEE-EEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGD---SIT-AFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~v~-~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
.++.||+.+.++.++.+|. .+++..|+.. ++.. ..+.+.. .+. ++ .-++..+.+++.+|.+.-+|.++
T Consensus 68 ~~~~vy~~~~~g~l~ald~--~tG~~~W~~~-~~~~---~~~~~~~~~~~~~~~~--~v~~~~v~v~~~~g~l~ald~~t 139 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDA--DTGKEIWSVD-LSEK---DGWFSKNKSALLSGGV--TVAGGKVYIGSEKGQVYALNAED 139 (394)
T ss_pred ECCEEEEECCCCeEEEEEC--CCCcEeeEEc-CCCc---cccccccccccccccc--EEECCEEEEEcCCCEEEEEECCC
Confidence 5789999998888999999 7777777754 1110 0010000 000 01 11356677788899999999887
Q ss_pred CeE
Q 000992 107 NAT 109 (1196)
Q Consensus 107 ~~~ 109 (1196)
|++
T Consensus 140 G~~ 142 (394)
T PRK11138 140 GEV 142 (394)
T ss_pred CCC
Confidence 754
No 482
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.83 E-value=46 Score=43.10 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=52.2
Q ss_pred cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE-E---EeCCCeeE-E--EEEec----------cCCCCcEEEEEEcc
Q 000992 220 LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV-F---YERNGLER-S--SFDIN----------EQIDSTVELLKWNC 282 (1196)
Q Consensus 220 ~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~-~---~e~nGl~~-~--~f~l~----------~~~~~~V~~laWSp 282 (1196)
+....|..|..||+|.++|-.+..+ ..|. + |-++|... | +...+ ......|..+.|.|
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~-----v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP 156 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRG-----VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHP 156 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCc-----EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcC
Confidence 3445689999999999999887642 1222 2 22233211 0 11111 11234699999999
Q ss_pred CC---CeeEEEEccCCcceEEEEEecCC
Q 000992 283 MS---DLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 283 Dg---~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
.| ..|++-.+|. ++++|++.+.
T Consensus 157 ~s~~~~~l~vLtsdn---~lR~y~~~~~ 181 (717)
T PF10168_consen 157 WSESDSHLVVLTSDN---TLRLYDISDP 181 (717)
T ss_pred CCCCCCeEEEEecCC---EEEEEecCCC
Confidence 85 7899999998 9999999753
No 483
>PRK11189 lipoprotein NlpI; Provisional
Probab=88.72 E-value=6.6 Score=45.10 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=41.9
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCc----HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~----~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
...+.+...+|+|++|+..|.++ .++. ...++-+ ... +.|++|++.+ .+|.... ...|...+..
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~-g~~~eA~~~~~~al~~~P~~~~--~~~~~~l~~~ 177 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL-YYG-GRYELAQDDLLAFYQDDPNDPY--RALWLYLAES 177 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHC-CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHc
Confidence 34456777888999998887765 2321 1222222 345 6777777766 2332211 1122223344
Q ss_pred ccCHHHHHHHHHh
Q 000992 1003 VKCFEDAATTYFC 1015 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ 1015 (1196)
.+++++|...|.+
T Consensus 178 ~~~~~~A~~~l~~ 190 (296)
T PRK11189 178 KLDPKQAKENLKQ 190 (296)
T ss_pred cCCHHHHHHHHHH
Confidence 5567777666643
No 484
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.36 E-value=4.4 Score=42.92 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=59.4
Q ss_pred CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-----------HHHHHHHHHcCCHHHHHHHHhhcC------CCH
Q 000992 984 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-----------EKAMKAYRASGNWSGVLTVAGLLK------LGK 1046 (1196)
Q Consensus 984 ~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-----------~kAl~~y~~~g~w~~al~la~~l~------~~~ 1046 (1196)
...++.+..+...|+|+...|++++|...|.++-++ -.-++..+..++|..+.....+.. -+.
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 466788999999999999999999999999998665 233466666778887776544321 111
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1047 DEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1047 ~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+....+-.--|=+....|+|.+||+.|++
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 11112211112222346777777777777
No 485
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=3 Score=48.85 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=41.6
Q ss_pred hhcccHHHHhhCHHHHHHHHHH---cCC------------CcHHHHHHHHHHHhcChHHHHhhcCCcHH---------HH
Q 000992 935 LMRYTIDLRLQRFENALKHIVS---MGD------------SYHADCLNLMKKYAQLFPLGLKLITDPAK---------ME 990 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~---~g~------------~~~~~ale~~~~~~~ly~~AL~L~~d~~~---------~~ 990 (1196)
+-+.+.-+++++|++|+..-+. ... -+.....++...| |.+||.+-.|-.+ ..
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h---f~qal~ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH---FQQALRLDPDHQKSKSASMMPKKL 249 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH---HhhhhccChhhhhHHhHhhhHHHH
Confidence 3445777899999988875332 211 1223344555666 8888887622222 22
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHh
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFC 1015 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ 1015 (1196)
..+++-|..+..+|+|++|.+.|..
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHH
Confidence 3444445555555444444444443
No 486
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.28 E-value=7.7 Score=49.92 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=51.5
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEE-eccCceeeeeeccccc---CccccccCccc-cCCCCeEEEEEccCC---ceEE
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVM-THDWDLLYENPLEELA---EGFDVHEPELS-SSFSFKSPISWRGDG---KYFA 189 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~-~~~~d~~~~~~l~~~~---~~~~Vs~tqf~-~~~~~v~~isWspDG---~~lA 189 (1196)
.|..+..||+|..||.+|..|-+++- -+.|-....+...... ..-+|.+..|. .....|..+.|.|.| ..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 58899999999999999987644332 1334322211111111 11222233333 334578999999875 5776
Q ss_pred EeeccccccCCCCEEEEEEC
Q 000992 190 TLSEFCNSSKLHKRLKVWER 209 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~ 209 (1196)
+=+ .|+++|+||.
T Consensus 166 -vLt------sdn~lR~y~~ 178 (717)
T PF10168_consen 166 -VLT------SDNTLRLYDI 178 (717)
T ss_pred -EEe------cCCEEEEEec
Confidence 443 4799999999
No 487
>PRK13684 Ycf48-like protein; Provisional
Probab=88.20 E-value=11 Score=44.08 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEE-EECCCCeEEEe-eeecCcEEEEEECCCCCEEEEEeCCceEEEEec----cCc
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLL-HSVDGNATEVV-GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DWD 148 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~l-w~~~~~~~e~v-g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~----~~d 148 (1196)
.+.+.++.+.|++..+ .++..|.+.. ++..+.....+ ..-...+.++++.|+|+.++.+ ..|.+++-+. .|.
T Consensus 172 ~g~~~~i~~~~~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 3578899999998655 4556776654 23222334322 2224679999999999887655 4577654322 233
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe---ccCCCce
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELKAFMG 225 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~---e~~~~~v 225 (1196)
.+. .... .....+..+.|+|+|..++ ++. ++.+ +...+.|+.=... ++.....
T Consensus 250 ~~~---~~~~------------~~~~~l~~v~~~~~~~~~~-~G~-------~G~v-~~S~d~G~tW~~~~~~~~~~~~~ 305 (334)
T PRK13684 250 KPI---IPEI------------TNGYGYLDLAYRTPGEIWA-GGG-------NGTL-LVSKDGGKTWEKDPVGEEVPSNF 305 (334)
T ss_pred ccc---CCcc------------ccccceeeEEEcCCCCEEE-EcC-------CCeE-EEeCCCCCCCeECCcCCCCCcce
Confidence 211 0000 0112457899999999888 553 3444 3455445432221 2222345
Q ss_pred eEEEEcCCCCeEEEEec
Q 000992 226 AVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~ 242 (1196)
..+.|..+++.+|+|..
T Consensus 306 ~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 306 YKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEEEEeCCCceEEECCC
Confidence 67788888888887754
No 488
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.93 E-value=2.7 Score=47.51 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHH
Q 000992 946 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKA 1025 (1196)
Q Consensus 946 ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~ 1025 (1196)
.|+.|+.++.+.|. +++|++. |+..++.|.+.......+-.+|+.+..+++|++|...|..
T Consensus 145 ~Y~~A~~l~~~~~~--y~~Ai~a-------f~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~---------- 205 (263)
T PRK10803 145 DYNAAIALVQDKSR--QDDAIVA-------FQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFAS---------- 205 (263)
T ss_pred HHHHHHHHHHhcCC--HHHHHHH-------HHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH----------
Confidence 36666666555444 5655543 3333444534434445555666666666555555544322
Q ss_pred HHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1026 YRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1026 y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++ ..++.+ ....+....++..+...|++.+|..+|.+
T Consensus 206 ---------vv---~~yP~s-~~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 206 ---------VV---KNYPKS-PKAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred ---------HH---HHCCCC-cchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12 132211 12234455566666667777777777665
No 489
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=87.67 E-value=18 Score=39.61 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+....++..+...|++++|..++..
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555677777777777777776555
No 490
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.52 E-value=54 Score=36.77 Aligned_cols=139 Identities=15% Similarity=0.074 Sum_probs=76.6
Q ss_pred CCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEE
Q 000992 126 PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK 205 (1196)
Q Consensus 126 PDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~ir 205 (1196)
..|+.|++|+.+| |.++... +........ +...|..+.--|+-+.|...+ |+++.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~-~~~~~~~i~---------------~~~~I~ql~vl~~~~~llvLs--------d~~l~ 59 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLS-DPSKPTRIL---------------KLSSITQLSVLPELNLLLVLS--------DGQLY 59 (275)
T ss_pred cCCCEEEEEECCC-EEEEEec-CCccceeEe---------------ecceEEEEEEecccCEEEEEc--------CCccE
Confidence 3578999999998 6554330 011100000 012367788778777666232 48899
Q ss_pred EEECCCCcEEEEec------------cC--CCceeEEE---EcCCCCeEEEEecCCCCCCCCeEEEEeCCC------eeE
Q 000992 206 VWERDSGTLQASSE------------LK--AFMGAVLE---WMPSGANIAAVYDRKSENKCPSIVFYERNG------LER 262 (1196)
Q Consensus 206 VWd~~~G~l~~~~e------------~~--~~~v~sla---wsPdG~~IAs~s~d~~~~~~~~V~~~e~nG------l~~ 262 (1196)
+++...-....... .. ...+...+ -...+..|+.+.. .+|.+|+.++ ...
T Consensus 60 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-------k~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 60 VYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-------KKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred EEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-------CEEEEEEEECCccccccee
Confidence 99874332222110 11 11223333 2233345555544 3677776543 234
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.+|.++ ..+.+++|. ++.|+++..++ ..+.|..+
T Consensus 133 ke~~lp----~~~~~i~~~--~~~i~v~~~~~----f~~idl~~ 166 (275)
T PF00780_consen 133 KEISLP----DPPSSIAFL--GNKICVGTSKG----FYLIDLNT 166 (275)
T ss_pred EEEEcC----CCcEEEEEe--CCEEEEEeCCc----eEEEecCC
Confidence 555554 358899999 67788888776 77777764
No 491
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.21 E-value=4.8 Score=51.72 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCC----HHHHH----HHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSS----LEKAM----KAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEEL 1060 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~----~~kAl----~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L 1060 (1196)
...+...|+-+...+.+++|...++.+-+ +..|. .+..+.+..++|+..++++ ..+++. .+....+|..|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-AREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-HHHHHHHHHHH
Confidence 45666777888888888888888887743 33443 3445556788888766653 223333 34566789999
Q ss_pred HHcCChHHHHHHHHHhc
Q 000992 1061 QALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1061 ~~~~~~~eAa~i~~~yl 1077 (1196)
.+.|+|++|..+|.+-+
T Consensus 165 ~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 165 DEIGQSEQADACFERLS 181 (694)
T ss_pred HHhcchHHHHHHHHHHH
Confidence 99999999999998844
No 492
>PRK13614 lipoprotein LpqB; Provisional
Probab=86.64 E-value=25 Score=44.07 Aligned_cols=163 Identities=12% Similarity=0.021 Sum_probs=83.8
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
.+.+++.|+||+.+|...+++...++-........ .+. + .....-+|.++|-.=. +. ++
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~-~~~----g------------~~Lt~PS~d~~g~vWt-v~--~g- 402 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARA-LTS----G------------STLTRPSFSPQDWVWT-AG--PG- 402 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCccee-eec----C------------CCccCCcccCCCCEEE-ee--CC-
Confidence 57889999999999999888733221111111111 010 1 1246778888883322 22 10
Q ss_pred cCCCCEEEEEECCCCcEE------EEeccCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEE--
Q 000992 198 SKLHKRLKVWERDSGTLQ------ASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLERSSFD-- 266 (1196)
Q Consensus 198 ~~~d~~irVWd~~~G~l~------~~~e~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~-- 266 (1196)
...+.+++-+..+|+.. .......+ .|..+..|+||..+|......+ .....|.--.|+ |.- ..+.
T Consensus 403 -~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g-~~~V~va~V~R~~~G~P-~~L~~~ 479 (573)
T PRK13614 403 -GNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNG-KSRVQVAGIVRNEDGTP-RELTAP 479 (573)
T ss_pred -CCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCC-ccEEEEEEEEeCCCCCe-EEccCc
Confidence 01144553322122211 11122344 3899999999999998764321 001223234553 431 1111
Q ss_pred eccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 267 INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 267 l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
+.......+.+++|..++++++.+...+....+++-.+
T Consensus 480 ~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v 517 (573)
T PRK13614 480 ITLAADSDADTGAWVGDSTVVVTKASATSNVVPELLSV 517 (573)
T ss_pred eecccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEe
Confidence 11111357899999999997777654321124444444
No 493
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.63 E-value=69 Score=37.34 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=22.0
Q ss_pred HHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhc
Q 000992 998 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLL 1042 (1196)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l 1042 (1196)
+.+...++..+|..+-.++.+ ++-+++|.++|+|++|...|.+.
T Consensus 245 ~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHc
Confidence 444444555555444444444 55555555555555555555443
No 494
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.61 E-value=61 Score=36.52 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=104.7
Q ss_pred eeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 23 LQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
-+++.|+.+ +.||-.+. .+.|..+|+ .+++... ...||..+.+. .++ .. +++.......+|..
T Consensus 47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~--~tg~~~~-~~~l~~~~FgE------Git---~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDL--ETGKVLQ-SVPLPPRYFGE------GIT---IL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEEET-TEEEEEECSTTEEEEEEEET--TTSSEEE-EEE-TTT--EE------EEE---EE-TTEEEEEESSSSEE
T ss_pred CccEEecCC-CEEEEeCCCCCcEEEEEEEC--CCCcEEE-EEECCccccce------eEE---EE-CCEEEEEEecCCeE
Confidence 455666543 45665543 446899998 6665422 22344433222 222 22 34566678899999
Q ss_pred EEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 100 LLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 100 ~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.+||.++-+. .... .++.=+.++ .||+.|....+..++..++ .+|+....+.... .+.+| ..+.
T Consensus 113 f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~--~g~pv---------~~LN 178 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD--NGRPV---------SNLN 178 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE--TTEE------------EE
T ss_pred EEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE--CCEEC---------CCcE
Confidence 9999987432 2222 223234454 7899998888888898887 5677766665543 33444 2456
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-----c----------CCCceeEEEEcCCCCeEEEEec
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-----L----------KAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-----~----------~~~~v~slawsPdG~~IAs~s~ 242 (1196)
.+-|- ||...| =-. . .++.++ -|+.+|+...... + ...--+.|||.|.++.+-.++.
T Consensus 179 ELE~i-~G~IyA-NVW-~----td~I~~-Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 179 ELEYI-NGKIYA-NVW-Q----TDRIVR-IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEE-TTEEEE-EET-T----SSEEEE-EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEE-cCEEEE-EeC-C----CCeEEE-EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 67775 888887 223 1 244444 4888998877531 0 1234589999998887766654
No 495
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.56 E-value=62 Score=37.44 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCEEEEEEC----------CCcEEEEECCCC-----eEEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 87 KEALIVGTS----------SGLLLLHSVDGN-----ATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 87 ~~~La~as~----------dG~I~lw~~~~~-----~~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
...||+|+. .|.|.+++.... +++.+. .++++|.+++-- +|. |+.+.+ ++|.++....+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcc
Confidence 467777754 299999998773 555432 356888887655 444 665655 478777533332
Q ss_pred -eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEE--EEECCCCc-EEEEec-cCCCc
Q 000992 150 -LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK--VWERDSGT-LQASSE-LKAFM 224 (1196)
Q Consensus 150 -~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~ir--VWd~~~G~-l~~~~e-~~~~~ 224 (1196)
+........ .-.+.++...+| +++ +|.. .+.+. -|+. ++. +..... ....+
T Consensus 119 ~l~~~~~~~~--------------~~~i~sl~~~~~--~I~-vgD~------~~sv~~~~~~~-~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 119 TLLKKAFYDS--------------PFYITSLSVFKN--YIL-VGDA------MKSVSLLRYDE-ENNKLILVARDYQPRW 174 (321)
T ss_dssp SEEEEEEE-B--------------SSSEEEEEEETT--EEE-EEES------SSSEEEEEEET-TTE-EEEEEEESS-BE
T ss_pred cchhhheecc--------------eEEEEEEecccc--EEE-EEEc------ccCEEEEEEEc-cCCEEEEEEecCCCcc
Confidence 221111111 124567777644 777 6753 23344 4576 444 443332 23456
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+.++.+=+|++.++++..+ ..|.++..+
T Consensus 175 v~~~~~l~d~~~~i~~D~~------gnl~~l~~~ 202 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKD------GNLFVLRYN 202 (321)
T ss_dssp EEEEEEE-SSSEEEEEETT------SEEEEEEE-
T ss_pred EEEEEEecCCcEEEEEcCC------CeEEEEEEC
Confidence 7788888787766666553 356666543
No 496
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.44 E-value=80 Score=37.68 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=41.6
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~ 109 (1196)
+++.||+++.++.++.+|. .+++..|+.. ++....+ ..+. .+..+.+++.+|.|.-+|..+|+.
T Consensus 119 ~~~~v~v~~~~g~l~ald~--~tG~~~W~~~-~~~~~~s------sP~v------~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNA--EDGEVAWQTK-VAGEALS------RPVV------SDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred ECCEEEEEcCCCEEEEEEC--CCCCCccccc-CCCceec------CCEE------ECCEEEEECCCCEEEEEEccCCCE
Confidence 4678999988888999999 7787777754 1211110 1111 134566677788888888877654
No 497
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.38 E-value=33 Score=42.25 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh-c-----C--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGL-L-----K--LGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~~g~w~~al~la~~-l-----~--~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
-.+...|+|.+|++....+. .++++ + + .-++++..+-..+|-.|..+|+-+||-.+|...+
T Consensus 183 c~~i~~gky~qA~elL~kA~------~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKAL------RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHhcccHHHHHHHHHHHH------HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34455677777777765542 22221 0 0 0134566777888999999999999999998843
No 498
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.29 E-value=9.7 Score=48.76 Aligned_cols=254 Identities=20% Similarity=0.187 Sum_probs=124.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhcCCccHHHHHHHHHHHHhhccc-----CCC-----CC-CCC------
Q 000992 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELL-----GSD-----EP-RRM------ 873 (1196)
Q Consensus 811 KVn~iC~a~~~~l~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~-----~~~-----~~-~~~------ 873 (1196)
-+..||+.++..|..- ... +.-+|--|=.-+-|.+..+|+.+-+..-..+. .+. +. +-+
T Consensus 112 ~l~~l~~~L~~Ela~~--~~p--l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi 187 (894)
T COG2909 112 SLESLLSSLLNELASY--EGP--LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEI 187 (894)
T ss_pred cHHHHHHHHHHHHHhh--cCc--eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhc
Confidence 4557788887777542 111 22234555555566677777665433100000 000 00 000
Q ss_pred C----hhhHHHHHHHHHhhc-------ChHHHHHHHHhccC-hhHHHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHH
Q 000992 874 S----YPSAEEALKHLLWLA-------DSEAVYEAALGLYD-LNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTID 941 (1196)
Q Consensus 874 ~----~~~a~~al~~l~~L~-------d~~~Ly~~ALg~yD-~~lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id 941 (1196)
+ .-+.||+-.++--.. |.+.||+..=|=-= +.|+.+.++ +-+|+| .++..|.-.+.....|..+
T Consensus 188 ~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~--~~~~~~--q~~~~LsG~~~~l~dYL~e 263 (894)
T COG2909 188 GSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALR--NNTSAE--QSLRGLSGAASHLSDYLVE 263 (894)
T ss_pred ChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHcc--CCCcHH--HHhhhccchHHHHHHHHHH
Confidence 0 114566666655443 56666664322211 344544444 457776 5555444434455555555
Q ss_pred HHhhCHHHHHHHHHH-c---------------CCCcHHHHHHHH-----------------HHHhcChHHHHhhc---CC
Q 000992 942 LRLQRFENALKHIVS-M---------------GDSYHADCLNLM-----------------KKYAQLFPLGLKLI---TD 985 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~-~---------------g~~~~~~ale~~-----------------~~~~~ly~~AL~L~---~d 985 (1196)
.-|.+-+-.++.|.- + |.+.-..-++-. +=| .||.+.|.-- ..
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH-~LFaeFL~~r~~~~~ 342 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYH-HLFAEFLRQRLQREL 342 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehh-HHHHHHHHhhhcccc
Confidence 545444444333321 1 221122333333 334 4444444332 24
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHHhhcCCCHHHH---HHHHHH
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASG-------NWSGVLTVAGLLKLGKDEV---AKLAQE 1055 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g-------~w~~al~la~~l~~~~~~~---~~l~~~ 1055 (1196)
+.+.+++...=+.|++..+...+|..+-.+||++++|.+...+.+ +....+.+-..+ +.+-+ ..+..-
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l--P~~~l~~~P~Lvll 420 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL--PAELLASTPRLVLL 420 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC--CHHHHhhCchHHHH
Confidence 456677777777777777777777777777777777777766663 111111111122 11111 234444
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 000992 1056 LCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1056 la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.|=.+...++|.||..+..+
T Consensus 421 ~aW~~~s~~r~~ea~~li~~ 440 (894)
T COG2909 421 QAWLLASQHRLAEAETLIAR 440 (894)
T ss_pred HHHHHHHccChHHHHHHHHH
Confidence 45556667777777776544
No 499
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.91 E-value=67 Score=36.25 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=99.5
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCC--cEEEEECCCCeEEEeeeecC-----cEEEEEECCCCCEEEEEeCCce
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLLHSVDGNATEVVGRVEG-----GVRFISPSPDGDLLGVTTGFGQ 139 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~I~lw~~~~~~~e~vg~~~~-----~I~~~awSPDg~~LA~~s~d~t 139 (1196)
+..+|..+....-++.|..||..+-+.+.-| .|+.+|+.++++...-..+. ||+-+ ++++....=.+++
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCe
Confidence 4555666667788999999999888888888 57779999986542222222 23322 2222222223455
Q ss_pred EEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 140 ILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 140 V~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
..++++ .++.+.+.....+. +.++ .||+.|. +|. +..++..+|+.+-+...+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EG-----------------WGLt--~dg~~Li-~SD------GS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEG-----------------WGLT--SDGKRLI-MSD------GSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS-------------------EEE--ECSSCEE-EE-------SSSEEEEE-TTT-SEEEEE
T ss_pred EEEEccccceEEEEEecCCcc-----------------eEEE--cCCCEEE-EEC------CccceEEECCcccceEEEE
Confidence 555553 35555444433221 5666 6788787 552 4578899998666555543
Q ss_pred ccCC-----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEec-------c-----CCCCcEEEEEE
Q 000992 219 ELKA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDIN-------E-----QIDSTVELLKW 280 (1196)
Q Consensus 219 e~~~-----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~-------~-----~~~~~V~~laW 280 (1196)
.-.+ ...+-+-|- +|.+.|=. .. ...|...+ .+|...+.+.+. . +..+-.+.|||
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANV-W~-----td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANV-WQ-----TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEE-TT-----SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEe-CC-----CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 2111 123445553 56555543 21 12344444 456666655443 0 11245788999
Q ss_pred ccCCCeeEEEEc
Q 000992 281 NCMSDLLAAVVR 292 (1196)
Q Consensus 281 SpDg~~LAs~~~ 292 (1196)
.|+++.|-+.+.
T Consensus 239 d~~~~~l~vTGK 250 (264)
T PF05096_consen 239 DPETDRLFVTGK 250 (264)
T ss_dssp ETTTTEEEEEET
T ss_pred eCCCCEEEEEeC
Confidence 999887766543
No 500
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=85.88 E-value=2.4 Score=46.05 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=58.5
Q ss_pred cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-
Q 000992 30 IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA- 108 (1196)
Q Consensus 30 ~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~- 108 (1196)
.-+..|++++.++.|+.|..|.+..-. . +....+ ......|.-.-++...|++..+|.|+.|+..-++
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~--d-------~~~s~~--e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHS--D-------RVCSGE--ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHH--H-------hhhccc--ccceeccccccccceeEEeccCCceeeeccccCce
Confidence 346789999999988888874111111 0 111111 1123334444556688999999999999997655
Q ss_pred EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEE
Q 000992 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1196)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~ 143 (1196)
+..+|+|.. -+++.+++.+.++.|.+|
T Consensus 137 ~g~~g~h~~--------~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 137 LGYVGQHNF--------ESGEELIVVGSDEFLKIA 163 (238)
T ss_pred eeeeccccC--------CCcceeEEecCCceEEee
Confidence 457787763 345566666666666665
Done!